Query 039701
Match_columns 476
No_of_seqs 122 out of 1423
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 3.8E-71 8.3E-76 550.1 47.8 467 8-474 8-487 (491)
2 PLN02863 UDP-glucoronosyl/UDP- 100.0 5.3E-69 1.1E-73 536.1 46.7 453 1-475 1-473 (477)
3 PLN03007 UDP-glucosyltransfera 100.0 5E-67 1.1E-71 526.6 46.7 463 1-474 1-481 (482)
4 PLN02992 coniferyl-alcohol glu 100.0 7.8E-67 1.7E-71 517.1 45.5 428 8-474 5-470 (481)
5 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.8E-66 6E-71 513.0 45.0 426 1-473 1-450 (451)
6 PLN02555 limonoid glucosyltran 100.0 7.7E-66 1.7E-70 511.5 45.7 444 1-473 1-469 (480)
7 PLN03015 UDP-glucosyl transfer 100.0 9.2E-66 2E-70 506.4 44.1 430 8-471 3-466 (470)
8 PLN02764 glycosyltransferase f 100.0 1.5E-65 3.2E-70 503.6 45.0 430 1-476 1-448 (453)
9 PLN02208 glycosyltransferase f 100.0 7.1E-66 1.5E-70 508.8 42.5 424 8-474 4-440 (442)
10 PLN02210 UDP-glucosyl transfer 100.0 1.6E-65 3.4E-70 509.7 44.4 439 1-473 1-455 (456)
11 PLN02173 UDP-glucosyl transfer 100.0 5.9E-65 1.3E-69 501.1 44.3 424 8-472 5-447 (449)
12 PLN00164 glucosyltransferase; 100.0 8E-65 1.7E-69 507.8 45.0 435 8-473 3-473 (480)
13 PLN00414 glycosyltransferase f 100.0 8.2E-65 1.8E-69 501.9 42.6 427 8-475 4-442 (446)
14 PLN02670 transferase, transfer 100.0 1.6E-64 3.5E-69 500.3 43.9 442 8-474 6-466 (472)
15 PLN02448 UDP-glycosyltransfera 100.0 4.9E-64 1.1E-68 502.5 45.0 434 8-473 10-457 (459)
16 PLN02207 UDP-glycosyltransfera 100.0 8.9E-64 1.9E-68 494.5 44.8 440 8-474 3-466 (468)
17 PLN03004 UDP-glycosyltransfera 100.0 6.1E-64 1.3E-68 494.1 40.7 423 8-462 3-450 (451)
18 PLN02562 UDP-glycosyltransfera 100.0 2.2E-63 4.7E-68 494.0 43.9 419 8-471 6-447 (448)
19 PLN02152 indole-3-acetate beta 100.0 2.9E-63 6.4E-68 489.9 44.0 425 8-471 3-454 (455)
20 PLN02554 UDP-glycosyltransfera 100.0 6.8E-63 1.5E-67 495.9 42.9 441 8-474 2-479 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 8.2E-62 1.8E-66 487.4 43.1 442 8-474 3-473 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 6.2E-48 1.3E-52 388.7 29.9 383 9-453 21-449 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 6.1E-49 1.3E-53 403.0 4.9 395 10-472 2-439 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.6E-44 3.4E-49 359.0 28.4 367 14-453 1-376 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 7.2E-44 1.6E-48 355.8 23.2 371 9-453 1-388 (401)
26 COG1819 Glycosyl transferases, 100.0 1.2E-41 2.6E-46 334.2 23.0 375 8-458 1-387 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.3E-40 2.8E-45 341.5 18.8 391 8-451 5-437 (496)
28 PRK12446 undecaprenyldiphospho 100.0 8.5E-26 1.8E-30 219.3 28.7 324 10-447 3-337 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.5E-24 3.3E-29 209.6 24.3 306 9-429 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 1.2E-23 2.7E-28 201.6 28.2 325 10-449 2-341 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.3E-21 2.8E-26 188.8 24.1 303 10-433 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.9 5.5E-19 1.2E-23 173.6 29.6 343 9-471 2-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.3E-17 2.8E-22 163.6 28.5 328 10-448 1-340 (350)
34 TIGR01133 murG undecaprenyldip 99.8 8.8E-16 1.9E-20 150.4 28.3 324 9-447 1-336 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 4.2E-16 9.1E-21 153.7 21.6 347 9-469 6-384 (385)
36 TIGR03590 PseG pseudaminic aci 99.7 8.1E-16 1.8E-20 144.7 20.0 104 280-388 171-278 (279)
37 PRK13609 diacylglycerol glucos 99.7 6.3E-15 1.4E-19 146.1 24.9 148 278-447 201-353 (380)
38 PRK13608 diacylglycerol glucos 99.7 4.2E-14 9.2E-19 140.3 25.3 165 278-472 201-370 (391)
39 PRK00025 lpxB lipid-A-disaccha 99.6 8E-14 1.7E-18 138.3 23.5 349 9-471 2-375 (380)
40 COG4671 Predicted glycosyl tra 99.6 7.4E-13 1.6E-17 121.4 20.7 333 8-431 9-364 (400)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 5.9E-16 1.3E-20 134.7 -2.0 136 281-434 1-146 (167)
42 PLN02605 monogalactosyldiacylg 99.5 3.4E-12 7.4E-17 126.4 21.6 148 277-447 204-363 (382)
43 TIGR03492 conserved hypothetic 99.5 2.6E-11 5.5E-16 119.9 25.7 325 17-433 5-365 (396)
44 cd03814 GT1_like_2 This family 99.4 2E-10 4.4E-15 112.5 29.9 139 281-447 198-347 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.4 8.8E-10 1.9E-14 112.2 30.4 142 282-449 265-417 (465)
46 PF03033 Glyco_transf_28: Glyc 99.4 3E-13 6.6E-18 113.8 3.7 126 11-151 1-132 (139)
47 cd03794 GT1_wbuB_like This fam 99.3 3.7E-09 8.1E-14 104.2 29.7 143 280-448 220-381 (394)
48 cd03823 GT1_ExpE7_like This fa 99.3 4.9E-09 1.1E-13 102.4 29.4 142 280-447 191-344 (359)
49 cd04962 GT1_like_5 This family 99.3 6.9E-09 1.5E-13 102.4 30.2 158 281-472 198-369 (371)
50 COG3980 spsG Spore coat polysa 99.3 1.1E-09 2.4E-14 97.9 20.9 132 281-433 160-294 (318)
51 cd03801 GT1_YqgM_like This fam 99.3 1E-08 2.3E-13 100.0 29.5 327 11-444 2-353 (374)
52 cd03800 GT1_Sucrose_synthase T 99.3 3.7E-09 8.1E-14 105.3 26.1 143 281-447 221-383 (398)
53 cd03818 GT1_ExpC_like This fam 99.2 1.8E-08 3.8E-13 100.6 30.7 97 331-449 280-383 (396)
54 cd03817 GT1_UGDG_like This fam 99.2 2.1E-08 4.6E-13 98.3 30.8 146 281-451 203-362 (374)
55 cd03808 GT1_cap1E_like This fa 99.2 2.2E-08 4.7E-13 97.5 30.1 326 10-446 1-343 (359)
56 cd03816 GT1_ALG1_like This fam 99.2 2.9E-08 6.4E-13 99.4 28.3 141 280-448 232-400 (415)
57 cd03798 GT1_wlbH_like This fam 99.2 1.1E-07 2.4E-12 92.9 31.9 343 18-473 13-376 (377)
58 PRK10307 putative glycosyl tra 99.2 8.9E-08 1.9E-12 96.1 31.2 163 281-474 230-408 (412)
59 PF04007 DUF354: Protein of un 99.2 4.9E-08 1.1E-12 93.1 27.3 321 18-476 9-335 (335)
60 cd03820 GT1_amsD_like This fam 99.1 9.8E-08 2.1E-12 92.4 29.7 99 331-451 234-338 (348)
61 PRK05749 3-deoxy-D-manno-octul 99.1 6.5E-08 1.4E-12 97.5 28.3 96 334-449 304-405 (425)
62 cd03795 GT1_like_4 This family 99.1 1.9E-07 4.1E-12 91.5 29.7 145 281-449 192-349 (357)
63 TIGR03449 mycothiol_MshA UDP-N 99.1 4.8E-07 1E-11 90.5 31.3 97 331-449 282-385 (405)
64 cd03825 GT1_wcfI_like This fam 99.0 3.2E-07 7E-12 90.1 27.5 113 331-472 243-363 (365)
65 cd03822 GT1_ecORF704_like This 99.0 2.5E-07 5.5E-12 90.6 26.7 96 331-449 246-351 (366)
66 TIGR00236 wecB UDP-N-acetylglu 99.0 5.2E-08 1.1E-12 96.1 21.4 317 10-433 2-335 (365)
67 cd03799 GT1_amsK_like This is 99.0 5.4E-07 1.2E-11 88.1 27.5 141 281-447 180-342 (355)
68 cd03805 GT1_ALG2_like This fam 99.0 1.8E-06 3.9E-11 85.9 31.1 94 331-447 279-379 (392)
69 cd03821 GT1_Bme6_like This fam 99.0 8.9E-07 1.9E-11 86.7 28.1 140 281-446 204-359 (375)
70 PRK09922 UDP-D-galactose:(gluc 98.9 1.2E-06 2.7E-11 86.1 26.9 144 281-448 181-342 (359)
71 cd03819 GT1_WavL_like This fam 98.9 5E-06 1.1E-10 81.3 30.6 149 281-449 186-348 (355)
72 cd03811 GT1_WabH_like This fam 98.9 1.6E-06 3.4E-11 84.0 26.2 136 280-441 189-341 (353)
73 TIGR02472 sucr_P_syn_N sucrose 98.9 4.1E-06 8.8E-11 84.7 29.7 141 282-446 250-420 (439)
74 cd03807 GT1_WbnK_like This fam 98.9 1.4E-05 3E-10 77.9 32.5 141 281-447 194-347 (365)
75 PRK14089 ipid-A-disaccharide s 98.9 2.9E-07 6.3E-12 88.6 19.3 164 280-466 168-343 (347)
76 cd03786 GT1_UDP-GlcNAc_2-Epime 98.8 1E-07 2.3E-12 93.8 16.2 131 279-433 198-338 (363)
77 cd05844 GT1_like_7 Glycosyltra 98.8 2.7E-06 6E-11 83.7 26.1 95 331-447 244-351 (367)
78 TIGR03087 stp1 sugar transfera 98.8 3.4E-06 7.3E-11 84.2 26.9 94 330-447 278-377 (397)
79 PRK01021 lpxB lipid-A-disaccha 98.8 2E-06 4.4E-11 87.0 24.3 222 220-472 368-604 (608)
80 cd03796 GT1_PIG-A_like This fa 98.8 9.3E-06 2E-10 81.1 29.1 126 280-433 193-334 (398)
81 cd04955 GT1_like_6 This family 98.8 6.7E-06 1.5E-10 80.7 26.7 134 283-446 196-344 (363)
82 TIGR02468 sucrsPsyn_pln sucros 98.8 1.7E-05 3.8E-10 85.4 30.7 156 268-449 469-654 (1050)
83 COG1519 KdtA 3-deoxy-D-manno-o 98.7 3E-05 6.6E-10 74.4 28.1 328 11-453 51-407 (419)
84 PLN02949 transferase, transfer 98.7 5.2E-05 1.1E-09 76.6 31.4 378 8-474 33-457 (463)
85 TIGR03088 stp2 sugar transfera 98.7 1E-05 2.2E-10 80.1 26.1 161 280-473 194-372 (374)
86 cd03802 GT1_AviGT4_like This f 98.7 2.3E-05 5.1E-10 75.9 27.8 125 282-432 173-308 (335)
87 cd03812 GT1_CapH_like This fam 98.7 8.5E-06 1.8E-10 79.8 24.8 92 331-445 248-344 (358)
88 cd04951 GT1_WbdM_like This fam 98.7 1.1E-05 2.5E-10 78.9 25.6 125 281-433 189-327 (360)
89 cd03804 GT1_wbaZ_like This fam 98.7 3.1E-06 6.8E-11 82.9 20.8 139 283-446 198-341 (351)
90 TIGR02149 glgA_Coryne glycogen 98.6 7.6E-05 1.6E-09 74.1 30.0 168 281-473 202-386 (388)
91 cd03809 GT1_mtfB_like This fam 98.6 7.6E-06 1.6E-10 80.1 22.3 96 330-449 251-353 (365)
92 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 4.4E-05 9.6E-10 74.9 22.4 314 10-431 2-338 (365)
93 cd03806 GT1_ALG11_like This fa 98.5 0.00017 3.7E-09 72.4 26.9 97 331-450 304-411 (419)
94 PF02350 Epimerase_2: UDP-N-ac 98.4 1.3E-06 2.8E-11 84.8 10.0 253 99-432 49-318 (346)
95 PF02684 LpxB: Lipid-A-disacch 98.4 6E-05 1.3E-09 73.2 21.3 209 221-460 141-364 (373)
96 PLN02846 digalactosyldiacylgly 98.4 0.00037 8.1E-09 69.8 26.9 121 284-433 232-364 (462)
97 PLN02275 transferase, transfer 98.4 0.0015 3.3E-08 64.4 30.9 75 332-430 286-371 (371)
98 PRK15179 Vi polysaccharide bio 98.4 0.002 4.4E-08 68.0 32.7 143 281-447 518-674 (694)
99 cd03792 GT1_Trehalose_phosphor 98.4 0.00055 1.2E-08 67.7 27.4 112 331-473 251-371 (372)
100 TIGR02470 sucr_synth sucrose s 98.3 0.0036 7.9E-08 66.4 32.7 93 331-445 618-726 (784)
101 KOG3349 Predicted glycosyltran 98.3 3.8E-06 8.3E-11 68.0 8.0 116 281-399 5-132 (170)
102 PRK00654 glgA glycogen synthas 98.2 0.0013 2.8E-08 67.1 27.3 127 281-431 283-427 (466)
103 PLN00142 sucrose synthase 98.2 0.0012 2.6E-08 70.0 25.5 94 331-446 641-750 (815)
104 cd04949 GT1_gtfA_like This fam 98.1 0.00033 7.1E-09 69.2 19.8 148 282-452 206-365 (372)
105 COG0763 LpxB Lipid A disacchar 98.1 0.00033 7.1E-09 66.8 17.3 222 221-472 144-380 (381)
106 cd04946 GT1_AmsK_like This fam 98.1 0.00015 3.2E-09 72.6 16.0 148 281-449 231-394 (407)
107 PRK15427 colanic acid biosynth 98.0 0.0002 4.3E-09 71.6 16.5 160 281-473 223-405 (406)
108 TIGR02918 accessory Sec system 98.0 0.0037 7.9E-08 64.0 25.8 166 281-473 320-499 (500)
109 PF00534 Glycos_transf_1: Glyc 98.0 3.3E-05 7.2E-10 67.1 9.4 142 279-445 14-171 (172)
110 PF13844 Glyco_transf_41: Glyc 97.9 0.0002 4.4E-09 71.0 14.0 149 277-444 282-442 (468)
111 TIGR02095 glgA glycogen/starch 97.9 0.018 3.9E-07 58.9 28.8 127 281-431 292-436 (473)
112 cd03813 GT1_like_3 This family 97.9 0.01 2.2E-07 60.8 26.6 97 331-449 353-459 (475)
113 cd03791 GT1_Glycogen_synthase_ 97.9 0.016 3.6E-07 59.2 28.3 129 281-432 297-442 (476)
114 PLN02316 synthase/transferase 97.9 0.066 1.4E-06 58.7 33.3 163 282-474 842-1034(1036)
115 PLN02501 digalactosyldiacylgly 97.9 0.02 4.2E-07 59.5 26.8 114 293-433 557-682 (794)
116 COG5017 Uncharacterized conser 97.8 0.00021 4.5E-09 57.0 9.6 109 282-402 2-124 (161)
117 cd04950 GT1_like_1 Glycosyltra 97.8 0.043 9.3E-07 54.2 31.4 79 331-433 253-341 (373)
118 PRK15484 lipopolysaccharide 1, 97.6 0.0017 3.7E-08 64.3 15.6 114 331-473 256-377 (380)
119 COG1817 Uncharacterized protei 97.6 0.064 1.4E-06 49.7 23.3 106 16-150 7-114 (346)
120 COG0381 WecB UDP-N-acetylgluco 97.6 0.054 1.2E-06 52.1 23.5 322 8-433 3-342 (383)
121 cd01635 Glycosyltransferase_GT 97.6 0.011 2.5E-07 53.1 18.9 50 331-382 160-217 (229)
122 PF13692 Glyco_trans_1_4: Glyc 97.3 0.00088 1.9E-08 55.5 7.6 127 281-432 3-135 (135)
123 PRK14099 glycogen synthase; Pr 97.3 0.26 5.6E-06 50.5 26.7 143 282-443 297-458 (485)
124 PRK09814 beta-1,6-galactofuran 97.0 0.0062 1.3E-07 59.1 10.8 110 331-469 206-331 (333)
125 PRK10125 putative glycosyl tra 96.8 0.63 1.4E-05 46.5 26.8 112 284-426 245-365 (405)
126 TIGR02193 heptsyl_trn_I lipopo 96.8 0.079 1.7E-06 51.0 16.7 140 272-430 172-319 (319)
127 KOG4626 O-linked N-acetylgluco 96.8 0.013 2.7E-07 59.0 10.8 120 278-399 757-887 (966)
128 PRK10422 lipopolysaccharide co 96.7 0.17 3.7E-06 49.5 18.2 95 279-376 183-287 (352)
129 PF06722 DUF1205: Protein of u 96.6 0.0019 4.2E-08 49.7 3.4 66 266-335 27-97 (97)
130 PF13477 Glyco_trans_4_2: Glyc 96.6 0.025 5.4E-07 47.0 10.5 101 10-146 1-105 (139)
131 TIGR02201 heptsyl_trn_III lipo 96.2 0.34 7.4E-06 47.2 17.4 95 279-376 181-285 (344)
132 COG3914 Spy Predicted O-linked 96.2 0.086 1.9E-06 53.0 12.8 119 277-399 427-560 (620)
133 PRK10017 colanic acid biosynth 96.2 0.25 5.5E-06 49.4 16.2 175 269-472 224-423 (426)
134 PRK15490 Vi polysaccharide bio 96.2 0.23 5.1E-06 50.8 15.8 115 331-474 454-576 (578)
135 PHA01633 putative glycosyl tra 96.2 0.06 1.3E-06 51.9 11.2 145 281-450 149-324 (335)
136 PRK14098 glycogen synthase; Pr 96.1 0.15 3.1E-06 52.4 14.7 130 281-430 308-449 (489)
137 PF13524 Glyco_trans_1_2: Glyc 96.1 0.047 1E-06 41.7 8.3 83 357-468 9-91 (92)
138 PRK10916 ADP-heptose:LPS hepto 96.0 0.37 8E-06 47.1 16.4 96 278-376 179-286 (348)
139 TIGR02195 heptsyl_trn_II lipop 95.8 0.78 1.7E-05 44.5 17.5 95 278-376 173-276 (334)
140 cd03789 GT1_LPS_heptosyltransf 95.8 1.2 2.6E-05 41.9 18.2 45 10-54 1-47 (279)
141 PF13579 Glyco_trans_4_4: Glyc 95.5 0.016 3.5E-07 48.9 4.2 95 24-148 6-104 (160)
142 PF12000 Glyco_trans_4_3: Gkyc 94.7 0.39 8.4E-06 41.3 10.1 96 34-149 1-97 (171)
143 PHA01630 putative group 1 glyc 94.5 0.48 1E-05 45.8 11.6 39 339-379 197-242 (331)
144 PRK10964 ADP-heptose:LPS hepto 94.2 2.8 6E-05 40.4 16.3 133 282-431 182-321 (322)
145 PF08660 Alg14: Oligosaccharid 94.2 0.43 9.3E-06 41.1 9.4 113 14-146 3-127 (170)
146 COG0859 RfaF ADP-heptose:LPS h 94.2 5 0.00011 38.9 18.0 104 9-145 2-107 (334)
147 TIGR03713 acc_sec_asp1 accesso 93.4 0.81 1.8E-05 47.1 11.3 95 332-453 409-509 (519)
148 PRK02261 methylaspartate mutas 91.3 0.96 2.1E-05 37.4 7.2 59 8-71 3-61 (137)
149 PF13439 Glyco_transf_4: Glyco 91.2 0.47 1E-05 40.5 5.7 28 18-45 11-38 (177)
150 PLN02939 transferase, transfer 91.2 8.2 0.00018 42.4 15.6 131 282-431 781-930 (977)
151 cd02067 B12-binding B12 bindin 91.0 3.5 7.6E-05 33.0 10.2 45 10-54 1-45 (119)
152 TIGR02400 trehalose_OtsA alpha 90.4 2.4 5.2E-05 43.0 10.5 105 336-472 340-455 (456)
153 COG0438 RfaG Glycosyltransfera 89.8 18 0.00038 34.1 16.2 81 331-433 256-343 (381)
154 cd03788 GT1_TPS Trehalose-6-Ph 89.8 1.1 2.3E-05 45.7 7.5 105 335-471 344-459 (460)
155 KOG2941 Beta-1,4-mannosyltrans 89.2 21 0.00046 34.1 26.7 126 8-153 12-142 (444)
156 TIGR02919 accessory Sec system 88.4 11 0.00025 37.9 13.5 125 278-433 282-412 (438)
157 COG1618 Predicted nucleotide k 87.1 3.4 7.4E-05 34.9 7.3 105 8-129 5-110 (179)
158 PRK02797 4-alpha-L-fucosyltran 85.3 24 0.00052 33.4 12.7 130 282-430 147-292 (322)
159 PF02310 B12-binding: B12 bind 84.5 3.6 7.8E-05 32.9 6.5 46 9-54 1-46 (121)
160 cd07039 TPP_PYR_POX Pyrimidine 83.8 14 0.00031 31.6 10.1 28 351-378 64-97 (164)
161 PF07429 Glyco_transf_56: 4-al 83.6 26 0.00057 33.7 12.3 131 282-431 186-332 (360)
162 cd07037 TPP_PYR_MenD Pyrimidin 81.8 15 0.00033 31.3 9.4 27 352-378 62-94 (162)
163 TIGR02370 pyl_corrinoid methyl 81.7 15 0.00032 32.6 9.7 49 8-56 84-132 (197)
164 cd03793 GT1_Glycogen_synthase_ 81.6 5.3 0.00012 41.3 7.5 97 341-449 467-570 (590)
165 PF02441 Flavoprotein: Flavopr 81.2 2.3 5E-05 34.7 4.1 45 9-54 1-45 (129)
166 PF05159 Capsule_synth: Capsul 80.3 12 0.00025 35.0 9.1 77 299-378 145-226 (269)
167 cd07038 TPP_PYR_PDC_IPDC_like 79.8 17 0.00037 30.9 9.2 28 351-378 60-93 (162)
168 PLN03063 alpha,alpha-trehalose 79.5 8.1 0.00018 42.2 8.6 98 344-473 371-477 (797)
169 PF02142 MGS: MGS-like domain 79.4 2.3 5E-05 32.6 3.3 84 25-144 2-94 (95)
170 PRK13932 stationary phase surv 79.2 19 0.00042 33.2 9.7 43 4-49 2-44 (257)
171 PLN02470 acetolactate synthase 79.0 13 0.00029 39.1 9.9 92 285-378 2-110 (585)
172 PF04413 Glycos_transf_N: 3-De 78.9 8 0.00017 33.9 6.9 99 10-147 22-125 (186)
173 cd02070 corrinoid_protein_B12- 78.6 8.5 0.00018 34.2 7.1 47 8-54 82-128 (201)
174 PRK06849 hypothetical protein; 76.7 24 0.00052 34.9 10.6 35 8-46 4-38 (389)
175 COG4370 Uncharacterized protei 76.3 16 0.00035 34.2 8.1 80 342-440 305-387 (412)
176 PRK06718 precorrin-2 dehydroge 75.2 26 0.00056 31.2 9.2 145 279-452 11-164 (202)
177 COG2185 Sbm Methylmalonyl-CoA 75.1 7.8 0.00017 32.0 5.3 47 8-54 12-59 (143)
178 PF01075 Glyco_transf_9: Glyco 74.2 11 0.00025 34.4 7.1 95 278-376 104-208 (247)
179 TIGR02398 gluc_glyc_Psyn gluco 73.9 1.1E+02 0.0023 31.5 14.3 110 334-475 364-484 (487)
180 smart00851 MGS MGS-like domain 72.6 27 0.00059 26.2 7.6 34 109-144 47-89 (90)
181 COG1703 ArgK Putative periplas 72.6 14 0.0003 34.7 6.9 38 8-45 51-88 (323)
182 cd07035 TPP_PYR_POX_like Pyrim 72.5 44 0.00095 27.9 9.8 26 353-378 62-93 (155)
183 PF02951 GSH-S_N: Prokaryotic 72.3 6.5 0.00014 31.5 4.2 38 9-46 1-41 (119)
184 cd02071 MM_CoA_mut_B12_BD meth 71.9 50 0.0011 26.5 10.9 44 10-53 1-44 (122)
185 cd01424 MGS_CPS_II Methylglyox 71.4 42 0.00092 26.2 8.8 84 20-145 10-100 (110)
186 TIGR00715 precor6x_red precorr 71.3 29 0.00064 32.1 8.9 37 108-146 56-98 (256)
187 TIGR01470 cysG_Nterm siroheme 71.2 60 0.0013 28.9 10.6 148 279-452 10-164 (205)
188 PF12146 Hydrolase_4: Putative 70.9 9.5 0.00021 28.0 4.6 35 9-43 16-50 (79)
189 KOG1387 Glycosyltransferase [C 70.0 1.1E+02 0.0024 29.6 22.1 291 93-453 127-446 (465)
190 COG2894 MinD Septum formation 69.9 38 0.00083 30.4 8.6 42 10-51 3-46 (272)
191 PRK06276 acetolactate synthase 69.6 28 0.00061 36.7 9.5 27 351-377 64-96 (586)
192 cd02069 methionine_synthase_B1 69.3 19 0.0004 32.4 6.9 48 8-55 88-135 (213)
193 TIGR00347 bioD dethiobiotin sy 68.7 51 0.0011 27.9 9.4 28 15-42 5-32 (166)
194 PF04127 DFP: DNA / pantothena 67.4 3.1 6.7E-05 36.4 1.5 38 8-45 3-52 (185)
195 PF09314 DUF1972: Domain of un 67.3 70 0.0015 27.9 9.8 39 10-48 3-46 (185)
196 cd01121 Sms Sms (bacterial rad 67.3 86 0.0019 30.9 11.6 44 10-53 84-127 (372)
197 PRK06321 replicative DNA helic 66.5 57 0.0012 33.3 10.5 41 11-51 229-270 (472)
198 PF00551 Formyl_trans_N: Formy 66.5 61 0.0013 28.1 9.5 106 9-149 1-110 (181)
199 PRK08155 acetolactate synthase 66.2 44 0.00095 35.0 10.1 89 285-377 3-109 (564)
200 cd01124 KaiC KaiC is a circadi 65.6 24 0.00053 30.4 7.0 46 11-56 2-47 (187)
201 PF04464 Glyphos_transf: CDP-G 64.6 4 8.6E-05 40.1 1.9 143 303-468 224-368 (369)
202 COG1484 DnaC DNA replication p 64.6 11 0.00023 35.0 4.6 47 8-54 105-151 (254)
203 PRK08305 spoVFB dipicolinate s 64.5 12 0.00027 32.9 4.7 42 8-49 5-46 (196)
204 TIGR02655 circ_KaiC circadian 64.5 95 0.002 31.9 11.9 47 10-56 265-311 (484)
205 COG0052 RpsB Ribosomal protein 64.0 38 0.00083 30.8 7.7 35 118-152 155-191 (252)
206 TIGR01501 MthylAspMutase methy 63.8 32 0.0007 28.2 6.7 45 9-53 2-46 (134)
207 PF06925 MGDG_synth: Monogalac 63.6 21 0.00045 30.6 6.0 44 104-149 76-125 (169)
208 PRK08322 acetolactate synthase 63.6 40 0.00086 35.2 9.2 27 351-377 64-96 (547)
209 TIGR02015 BchY chlorophyllide 63.1 82 0.0018 31.7 10.8 31 10-45 287-317 (422)
210 cd01974 Nitrogenase_MoFe_beta 62.8 69 0.0015 32.3 10.4 35 107-146 367-401 (435)
211 PRK05595 replicative DNA helic 62.7 50 0.0011 33.4 9.4 42 11-52 204-246 (444)
212 TIGR00173 menD 2-succinyl-5-en 62.1 63 0.0014 32.5 10.0 26 351-376 64-95 (432)
213 PRK08760 replicative DNA helic 61.8 38 0.00082 34.6 8.3 41 11-51 232-273 (476)
214 PRK08506 replicative DNA helic 61.8 69 0.0015 32.8 10.2 43 10-52 194-236 (472)
215 PRK07710 acetolactate synthase 61.2 41 0.0009 35.3 8.8 27 351-377 79-111 (571)
216 PRK06067 flagellar accessory p 61.2 33 0.00072 31.1 7.2 45 10-54 27-71 (234)
217 PRK11823 DNA repair protein Ra 59.4 1.2E+02 0.0026 30.8 11.3 44 10-53 82-125 (446)
218 cd00561 CobA_CobO_BtuR ATP:cor 59.3 1.1E+02 0.0024 26.0 11.4 97 10-129 4-105 (159)
219 PRK09165 replicative DNA helic 59.3 66 0.0014 33.1 9.6 43 11-53 220-277 (497)
220 cd01423 MGS_CPS_I_III Methylgl 59.2 88 0.0019 24.7 8.8 87 21-145 11-106 (116)
221 PRK05636 replicative DNA helic 59.0 43 0.00092 34.5 8.1 41 11-51 268-309 (505)
222 TIGR00640 acid_CoA_mut_C methy 58.3 1E+02 0.0022 25.2 9.1 39 8-46 2-40 (132)
223 PRK14501 putative bifunctional 58.3 36 0.00077 37.0 7.9 113 334-474 344-463 (726)
224 PRK05920 aromatic acid decarbo 57.7 16 0.00036 32.4 4.3 44 8-52 3-46 (204)
225 PRK13789 phosphoribosylamine-- 57.5 31 0.00066 34.7 6.8 33 8-45 4-36 (426)
226 KOG0541 Alkyl hydroperoxide re 57.2 57 0.0012 27.4 6.9 37 9-45 44-87 (171)
227 COG0496 SurE Predicted acid ph 56.7 26 0.00056 32.1 5.4 102 21-149 12-126 (252)
228 PRK08527 acetolactate synthase 56.7 66 0.0014 33.7 9.4 27 351-377 67-99 (563)
229 TIGR03600 phage_DnaB phage rep 56.6 1E+02 0.0023 30.8 10.5 41 11-51 197-238 (421)
230 cd01980 Chlide_reductase_Y Chl 56.4 1E+02 0.0022 30.8 10.3 32 111-147 344-375 (416)
231 PRK00090 bioD dithiobiotin syn 56.3 75 0.0016 28.4 8.6 33 11-43 2-35 (222)
232 cd01965 Nitrogenase_MoFe_beta_ 56.3 73 0.0016 32.1 9.3 35 107-146 361-395 (428)
233 PF02585 PIG-L: GlcNAc-PI de-N 55.5 67 0.0014 25.8 7.4 25 101-127 84-108 (128)
234 PRK07525 sulfoacetaldehyde ace 55.3 77 0.0017 33.4 9.6 78 298-377 10-101 (588)
235 PRK11519 tyrosine kinase; Prov 55.1 41 0.0009 36.5 7.7 38 8-45 525-564 (719)
236 TIGR02195 heptsyl_trn_II lipop 55.1 2E+02 0.0043 27.6 12.9 86 24-150 195-280 (334)
237 PRK05858 hypothetical protein; 55.1 78 0.0017 33.0 9.6 26 352-377 69-100 (542)
238 TIGR03878 thermo_KaiC_2 KaiC d 55.0 1.8E+02 0.0038 26.9 12.3 38 10-47 38-75 (259)
239 PRK10490 sensor protein KdpD; 54.6 23 0.0005 39.5 5.8 47 8-54 24-71 (895)
240 TIGR00118 acolac_lg acetolacta 54.6 71 0.0015 33.5 9.2 28 351-378 65-98 (558)
241 PRK00784 cobyric acid synthase 54.5 1.2E+02 0.0025 31.3 10.5 35 10-44 4-39 (488)
242 TIGR00665 DnaB replicative DNA 54.1 1.1E+02 0.0025 30.7 10.4 42 10-51 197-239 (434)
243 PRK08199 thiamine pyrophosphat 53.9 92 0.002 32.6 9.9 27 351-377 72-104 (557)
244 PRK07773 replicative DNA helic 53.7 61 0.0013 36.1 8.8 43 11-53 220-263 (886)
245 PRK05986 cob(I)alamin adenolsy 53.5 1.6E+02 0.0034 25.9 12.0 101 8-129 22-125 (191)
246 COG0859 RfaF ADP-heptose:LPS h 53.3 1.3E+02 0.0028 29.1 10.1 100 9-150 176-280 (334)
247 PRK11269 glyoxylate carboligas 53.0 74 0.0016 33.6 9.1 28 351-378 69-102 (591)
248 PRK12342 hypothetical protein; 52.3 27 0.00059 32.3 4.9 40 108-149 100-145 (254)
249 cd07025 Peptidase_S66 LD-Carbo 52.3 31 0.00068 32.4 5.5 76 292-381 46-123 (282)
250 PRK06732 phosphopantothenate-- 52.2 17 0.00037 33.0 3.6 36 10-45 2-49 (229)
251 cd02065 B12-binding_like B12 b 52.0 40 0.00086 26.8 5.5 44 11-54 2-45 (125)
252 cd01425 RPS2 Ribosomal protein 51.8 84 0.0018 27.7 7.8 34 117-150 125-160 (193)
253 PF01975 SurE: Survival protei 51.6 23 0.00051 31.2 4.3 40 10-50 2-41 (196)
254 TIGR02852 spore_dpaB dipicolin 51.5 20 0.00042 31.4 3.7 39 10-48 2-40 (187)
255 PRK05748 replicative DNA helic 51.3 1.3E+02 0.0028 30.5 10.2 42 10-51 205-247 (448)
256 PF06506 PrpR_N: Propionate ca 51.3 55 0.0012 28.3 6.5 121 20-152 17-155 (176)
257 PRK02155 ppnK NAD(+)/NADH kina 51.1 38 0.00082 32.1 5.9 70 295-377 21-94 (291)
258 PRK12311 rpsB 30S ribosomal pr 50.6 65 0.0014 31.0 7.3 34 118-151 151-186 (326)
259 COG0541 Ffh Signal recognition 50.6 2.7E+02 0.0059 27.9 11.6 48 9-56 101-148 (451)
260 PRK07313 phosphopantothenoylcy 50.6 22 0.00047 31.0 3.9 42 10-52 3-44 (182)
261 TIGR00416 sms DNA repair prote 50.6 1.8E+02 0.004 29.5 11.0 43 10-52 96-138 (454)
262 COG1066 Sms Predicted ATP-depe 50.3 1.3E+02 0.0029 29.8 9.3 104 11-150 96-220 (456)
263 COG2910 Putative NADH-flavin r 50.3 15 0.00033 31.8 2.7 32 10-45 2-33 (211)
264 KOG0853 Glycosyltransferase [C 50.0 36 0.00077 34.6 5.7 64 362-443 381-444 (495)
265 PRK09620 hypothetical protein; 49.8 22 0.00047 32.3 3.9 38 8-45 3-52 (229)
266 PF01210 NAD_Gly3P_dh_N: NAD-d 49.8 13 0.00028 31.5 2.3 32 10-46 1-32 (157)
267 COG0041 PurE Phosphoribosylcar 49.7 1.6E+02 0.0034 24.8 11.0 141 281-455 4-153 (162)
268 TIGR03880 KaiC_arch_3 KaiC dom 49.4 1.9E+02 0.0042 25.8 10.8 46 10-55 18-63 (224)
269 PRK08057 cobalt-precorrin-6x r 48.8 79 0.0017 29.1 7.4 38 107-146 55-98 (248)
270 PRK06048 acetolactate synthase 48.7 92 0.002 32.7 8.9 29 347-377 69-103 (561)
271 TIGR03877 thermo_KaiC_1 KaiC d 48.4 2.1E+02 0.0046 25.9 10.4 45 10-54 23-67 (237)
272 PRK06456 acetolactate synthase 48.1 1E+02 0.0023 32.3 9.3 27 351-377 69-101 (572)
273 PRK13982 bifunctional SbtC-lik 48.1 23 0.00049 36.0 4.0 38 8-45 256-305 (475)
274 PF06258 Mito_fiss_Elm1: Mitoc 48.0 2.6E+02 0.0056 26.8 13.4 116 280-401 147-282 (311)
275 PTZ00445 p36-lilke protein; Pr 47.9 2.1E+02 0.0045 25.7 10.1 113 20-147 74-205 (219)
276 PRK07282 acetolactate synthase 47.7 94 0.002 32.6 8.8 79 298-378 14-107 (566)
277 TIGR03457 sulphoacet_xsc sulfo 47.6 97 0.0021 32.6 8.9 27 351-377 65-97 (579)
278 PF07355 GRDB: Glycine/sarcosi 47.3 36 0.00078 32.7 5.0 44 100-145 63-116 (349)
279 KOG0780 Signal recognition par 47.3 1.3E+02 0.0028 29.6 8.6 44 8-51 100-144 (483)
280 PF06745 KaiC: KaiC; InterPro 46.3 84 0.0018 28.2 7.3 47 10-56 21-68 (226)
281 TIGR01162 purE phosphoribosyla 46.3 1.7E+02 0.0036 24.8 8.2 30 286-317 5-34 (156)
282 cd01122 GP4d_helicase GP4d_hel 46.2 24 0.00051 32.9 3.7 43 10-52 32-75 (271)
283 COG0678 AHP1 Peroxiredoxin [Po 45.9 84 0.0018 26.3 6.2 37 8-44 37-80 (165)
284 PRK08979 acetolactate synthase 45.6 1.2E+02 0.0026 31.9 9.2 28 350-377 67-100 (572)
285 PRK06725 acetolactate synthase 45.2 1.1E+02 0.0024 32.2 8.8 27 351-377 78-110 (570)
286 PRK06882 acetolactate synthase 45.2 1.2E+02 0.0026 31.9 9.2 27 351-377 68-100 (574)
287 PF02776 TPP_enzyme_N: Thiamin 45.2 56 0.0012 28.0 5.6 29 351-379 65-99 (172)
288 PRK06457 pyruvate dehydrogenas 45.1 1.1E+02 0.0024 31.9 8.8 29 348-378 64-98 (549)
289 PF09001 DUF1890: Domain of un 45.1 28 0.00061 28.4 3.3 37 18-54 9-45 (139)
290 PF06506 PrpR_N: Propionate ca 45.0 24 0.00051 30.5 3.3 29 348-379 34-62 (176)
291 cd03466 Nitrogenase_NifN_2 Nit 45.0 2.3E+02 0.005 28.5 10.8 35 107-146 362-396 (429)
292 PF13499 EF-hand_7: EF-hand do 44.9 25 0.00053 24.4 2.8 53 413-470 13-65 (66)
293 PRK07979 acetolactate synthase 44.8 1.3E+02 0.0028 31.6 9.4 28 351-378 68-101 (574)
294 TIGR02418 acolac_catab acetola 44.8 1.1E+02 0.0024 31.8 8.8 28 351-378 62-95 (539)
295 cd07062 Peptidase_S66_mccF_lik 44.7 47 0.001 31.7 5.5 75 292-380 50-126 (308)
296 PRK07524 hypothetical protein; 44.7 1.5E+02 0.0032 30.9 9.7 26 352-377 66-97 (535)
297 TIGR00421 ubiX_pad polyprenyl 44.6 27 0.00059 30.4 3.5 42 10-52 1-42 (181)
298 PRK05647 purN phosphoribosylgl 44.3 2.3E+02 0.0049 25.1 9.8 34 9-45 2-37 (200)
299 TIGR01286 nifK nitrogenase mol 44.2 2E+02 0.0044 29.8 10.3 34 108-146 428-461 (515)
300 PRK06029 3-octaprenyl-4-hydrox 44.2 36 0.00078 29.8 4.2 43 10-53 3-46 (185)
301 PRK06249 2-dehydropantoate 2-r 44.2 32 0.00069 32.9 4.4 34 8-46 5-38 (313)
302 PRK06466 acetolactate synthase 44.1 1.4E+02 0.003 31.5 9.4 28 351-378 68-101 (574)
303 PF05693 Glycogen_syn: Glycoge 43.9 33 0.00072 35.7 4.4 40 120-159 142-184 (633)
304 TIGR03254 oxalate_oxc oxalyl-C 43.9 1.3E+02 0.0029 31.4 9.2 27 351-377 66-98 (554)
305 PF00448 SRP54: SRP54-type pro 43.9 1.5E+02 0.0032 26.1 8.2 39 10-48 3-41 (196)
306 PF06792 UPF0261: Uncharacteri 43.8 1.7E+02 0.0037 29.0 9.1 99 277-382 183-282 (403)
307 TIGR03446 mycothiol_Mca mycoth 43.8 1.9E+02 0.0042 27.2 9.3 20 104-125 108-127 (283)
308 cd01968 Nitrogenase_NifE_I Nit 43.7 2.2E+02 0.0047 28.4 10.4 34 108-146 347-380 (410)
309 TIGR02720 pyruv_oxi_spxB pyruv 43.7 1.4E+02 0.003 31.5 9.3 29 348-378 63-97 (575)
310 PRK06965 acetolactate synthase 43.5 1.1E+02 0.0024 32.2 8.6 77 298-378 25-118 (587)
311 PRK11914 diacylglycerol kinase 43.5 64 0.0014 30.7 6.3 68 294-378 25-96 (306)
312 PRK08266 hypothetical protein; 43.4 1.7E+02 0.0036 30.6 9.8 27 351-377 69-101 (542)
313 PRK08978 acetolactate synthase 42.9 1.1E+02 0.0025 31.8 8.5 30 347-378 62-97 (548)
314 PRK08617 acetolactate synthase 42.7 1.4E+02 0.003 31.2 9.1 28 351-378 68-101 (552)
315 PRK09107 acetolactate synthase 42.5 1.7E+02 0.0036 31.0 9.7 79 298-378 15-108 (595)
316 PRK03359 putative electron tra 42.5 47 0.001 30.7 4.9 41 107-149 102-148 (256)
317 COG2874 FlaH Predicted ATPases 42.1 99 0.0022 27.7 6.5 34 18-51 38-71 (235)
318 PF05728 UPF0227: Uncharacteri 42.0 55 0.0012 28.6 5.1 44 107-150 47-91 (187)
319 PRK10916 ADP-heptose:LPS hepto 42.0 65 0.0014 31.3 6.2 89 24-149 201-289 (348)
320 cd01452 VWA_26S_proteasome_sub 41.9 1.8E+02 0.0039 25.5 8.2 63 8-71 107-173 (187)
321 COG0801 FolK 7,8-dihydro-6-hyd 41.9 51 0.0011 28.0 4.6 34 281-314 3-36 (160)
322 PRK07586 hypothetical protein; 41.5 1.3E+02 0.0028 31.1 8.7 27 352-378 66-98 (514)
323 TIGR00959 ffh signal recogniti 41.2 2.3E+02 0.005 28.5 9.9 43 9-51 100-143 (428)
324 TIGR00639 PurN phosphoribosylg 41.1 2.5E+02 0.0054 24.6 11.1 34 9-45 1-36 (190)
325 PRK10867 signal recognition pa 41.1 2.3E+02 0.005 28.6 9.9 43 9-51 101-144 (433)
326 PRK04328 hypothetical protein; 41.0 2.9E+02 0.0062 25.3 13.4 45 10-54 25-69 (249)
327 COG4088 Predicted nucleotide k 40.9 33 0.00072 30.5 3.4 34 11-44 4-37 (261)
328 cd01977 Nitrogenase_VFe_alpha 40.7 1.7E+02 0.0036 29.4 9.0 31 111-146 352-382 (415)
329 TIGR02329 propionate_PrpR prop 40.5 2.2E+02 0.0047 29.6 9.9 29 118-149 144-172 (526)
330 PRK07064 hypothetical protein; 40.0 2E+02 0.0044 29.9 9.9 27 351-377 67-99 (544)
331 PRK01077 cobyrinic acid a,c-di 39.5 2.8E+02 0.0061 28.1 10.5 35 10-44 5-40 (451)
332 TIGR02113 coaC_strep phosphopa 38.8 36 0.00078 29.5 3.4 41 10-51 2-42 (177)
333 TIGR02699 archaeo_AfpA archaeo 38.8 51 0.0011 28.5 4.2 41 11-52 2-44 (174)
334 KOG1209 1-Acyl dihydroxyaceton 38.3 45 0.00098 29.8 3.8 36 1-42 1-38 (289)
335 PRK05632 phosphate acetyltrans 38.3 3.1E+02 0.0066 29.7 11.0 35 10-44 4-39 (684)
336 PRK08673 3-deoxy-7-phosphohept 38.1 3.8E+02 0.0083 25.9 12.6 126 281-429 179-325 (335)
337 COG3660 Predicted nucleoside-d 37.5 3.5E+02 0.0075 25.3 16.8 73 300-376 189-271 (329)
338 PRK06522 2-dehydropantoate 2-r 37.5 44 0.00096 31.6 4.2 31 9-44 1-31 (304)
339 COG1698 Uncharacterized protei 37.3 1.5E+02 0.0031 22.3 5.7 51 421-474 17-67 (93)
340 cd05022 S-100A13 S-100A13: S-1 37.1 60 0.0013 24.5 4.0 56 413-475 22-77 (89)
341 PRK07449 2-succinyl-5-enolpyru 36.8 1.2E+02 0.0026 31.8 7.7 79 298-378 13-106 (568)
342 KOG2825 Putative arsenite-tran 36.2 1.8E+02 0.0039 26.9 7.3 132 9-144 19-165 (323)
343 COG0503 Apt Adenine/guanine ph 36.2 78 0.0017 27.5 5.1 37 108-146 44-82 (179)
344 PF08433 KTI12: Chromatin asso 35.9 1.8E+02 0.0039 27.2 7.8 101 11-153 4-110 (270)
345 PRK13604 luxD acyl transferase 35.9 82 0.0018 30.0 5.5 35 8-42 36-70 (307)
346 TIGR01918 various_sel_PB selen 35.8 66 0.0014 31.9 4.9 43 102-146 61-113 (431)
347 TIGR01917 gly_red_sel_B glycin 35.7 66 0.0014 31.9 4.9 44 101-146 60-113 (431)
348 cd00861 ProRS_anticodon_short 35.4 72 0.0016 23.8 4.3 37 8-44 1-39 (94)
349 PRK13054 lipid kinase; Reviewe 35.4 1.8E+02 0.0039 27.5 7.9 67 295-378 18-92 (300)
350 PF02571 CbiJ: Precorrin-6x re 35.3 3.2E+02 0.0069 25.2 9.2 102 25-146 118-225 (249)
351 PF04244 DPRP: Deoxyribodipyri 35.3 55 0.0012 29.6 4.1 25 21-45 47-71 (224)
352 PF02702 KdpD: Osmosensitive K 35.3 69 0.0015 28.4 4.5 47 8-54 5-52 (211)
353 TIGR00313 cobQ cobyric acid sy 35.3 5.1E+02 0.011 26.5 12.1 27 18-44 9-35 (475)
354 PRK04940 hypothetical protein; 35.2 88 0.0019 27.2 5.1 32 119-150 60-92 (180)
355 COG0107 HisF Imidazoleglycerol 35.1 1.1E+02 0.0023 27.8 5.6 113 266-430 86-198 (256)
356 PRK12921 2-dehydropantoate 2-r 35.0 48 0.001 31.4 4.0 31 9-44 1-31 (305)
357 TIGR00708 cobA cob(I)alamin ad 34.9 3E+02 0.0065 23.8 11.3 98 9-129 6-107 (173)
358 PF00731 AIRC: AIR carboxylase 34.8 2.8E+02 0.006 23.3 11.0 138 282-452 3-148 (150)
359 TIGR02700 flavo_MJ0208 archaeo 34.8 59 0.0013 29.6 4.3 43 11-53 2-46 (234)
360 PRK07206 hypothetical protein; 34.7 1.6E+02 0.0035 29.3 7.9 32 9-45 3-34 (416)
361 PF01695 IstB_IS21: IstB-like 34.7 48 0.001 28.7 3.5 41 8-48 47-87 (178)
362 PLN03064 alpha,alpha-trehalose 34.7 5.6E+02 0.012 28.8 12.2 104 338-473 446-561 (934)
363 PF08323 Glyco_transf_5: Starc 34.6 31 0.00068 31.6 2.5 23 24-46 21-43 (245)
364 COG2099 CobK Precorrin-6x redu 34.2 2.8E+02 0.0062 25.5 8.3 106 25-146 117-228 (257)
365 cd03789 GT1_LPS_heptosyltransf 33.9 3.9E+02 0.0084 24.7 10.4 88 23-150 140-227 (279)
366 TIGR00521 coaBC_dfp phosphopan 33.9 59 0.0013 32.2 4.4 45 8-53 3-47 (390)
367 COG2210 Peroxiredoxin family p 33.7 61 0.0013 26.6 3.7 38 12-49 7-44 (137)
368 PRK10422 lipopolysaccharide co 33.4 1.6E+02 0.0034 28.6 7.4 36 108-149 255-290 (352)
369 PRK09302 circadian clock prote 33.3 1.3E+02 0.0028 31.1 7.0 46 10-55 275-320 (509)
370 PRK06935 2-deoxy-D-gluconate 3 33.2 1.7E+02 0.0037 26.6 7.3 33 10-45 16-48 (258)
371 TIGR00147 lipid kinase, YegS/R 33.0 1.8E+02 0.0038 27.4 7.5 68 294-378 18-91 (293)
372 PF06180 CbiK: Cobalt chelatas 33.0 54 0.0012 30.4 3.8 39 280-318 2-43 (262)
373 COG3195 Uncharacterized protei 33.0 2.9E+02 0.0063 23.5 7.5 95 342-451 65-164 (176)
374 TIGR00379 cobB cobyrinic acid 32.7 4.4E+02 0.0095 26.7 10.6 105 11-151 2-121 (449)
375 PRK04885 ppnK inorganic polyph 32.7 34 0.00074 31.8 2.4 29 348-378 35-69 (265)
376 COG0003 ArsA Predicted ATPase 32.6 3.6E+02 0.0077 26.0 9.3 40 10-49 3-43 (322)
377 cd00672 CysRS_core catalytic c 32.5 2.2E+02 0.0047 25.5 7.5 28 18-45 35-65 (213)
378 PRK09259 putative oxalyl-CoA d 32.5 1.3E+02 0.0027 31.7 6.9 27 351-377 73-105 (569)
379 cd02034 CooC The accessory pro 32.2 1.1E+02 0.0024 24.3 5.0 37 10-46 1-37 (116)
380 COG1797 CobB Cobyrinic acid a, 32.2 1.7E+02 0.0037 29.3 7.0 39 10-48 2-42 (451)
381 cd01976 Nitrogenase_MoFe_alpha 31.8 60 0.0013 32.6 4.2 35 107-146 359-393 (421)
382 PF02558 ApbA: Ketopantoate re 31.7 67 0.0014 26.6 3.9 28 27-54 12-39 (151)
383 PRK07789 acetolactate synthase 31.7 2.6E+02 0.0056 29.7 9.1 76 298-377 35-127 (612)
384 PRK08229 2-dehydropantoate 2-r 31.4 57 0.0012 31.5 3.9 32 9-45 3-34 (341)
385 KOG3339 Predicted glycosyltran 31.4 1.2E+02 0.0026 26.3 5.2 26 9-35 39-64 (211)
386 CHL00099 ilvB acetohydroxyacid 31.3 2.8E+02 0.0061 29.2 9.3 28 351-378 77-110 (585)
387 PRK09219 xanthine phosphoribos 31.3 98 0.0021 27.1 4.9 39 106-146 39-79 (189)
388 PRK02231 ppnK inorganic polyph 31.3 1E+02 0.0023 28.8 5.4 35 342-378 36-74 (272)
389 CHL00076 chlB photochlorophyll 31.3 68 0.0015 33.2 4.5 36 107-147 364-399 (513)
390 PRK06270 homoserine dehydrogen 31.2 3.5E+02 0.0077 26.2 9.3 164 280-457 4-208 (341)
391 PRK13337 putative lipid kinase 31.1 2E+02 0.0042 27.3 7.5 67 295-378 19-91 (304)
392 PRK07418 acetolactate synthase 31.1 2.7E+02 0.0059 29.6 9.2 28 350-377 85-118 (616)
393 PRK05579 bifunctional phosphop 31.0 78 0.0017 31.5 4.7 45 8-53 6-50 (399)
394 PF13450 NAD_binding_8: NAD(P) 30.8 62 0.0013 22.8 3.0 20 26-45 9-28 (68)
395 PLN02939 transferase, transfer 30.6 84 0.0018 34.9 5.2 37 8-46 481-525 (977)
396 PRK13059 putative lipid kinase 30.5 1.8E+02 0.0038 27.5 7.0 66 295-378 19-90 (295)
397 PF01075 Glyco_transf_9: Glyco 30.4 1.9E+02 0.0042 26.1 7.1 103 8-151 105-213 (247)
398 cd02072 Glm_B12_BD B12 binding 30.3 1.9E+02 0.0042 23.5 6.1 42 10-51 1-42 (128)
399 CHL00072 chlL photochlorophyll 30.0 95 0.0021 29.3 5.0 36 9-44 1-36 (290)
400 PRK05380 pyrG CTP synthetase; 30.0 6E+02 0.013 26.4 10.8 39 9-47 2-43 (533)
401 PRK05299 rpsB 30S ribosomal pr 29.9 4.2E+02 0.0091 24.6 9.0 33 118-150 156-190 (258)
402 PF00505 HMG_box: HMG (high mo 29.9 1.3E+02 0.0028 20.8 4.6 40 415-454 24-65 (69)
403 PF02016 Peptidase_S66: LD-car 29.8 59 0.0013 30.6 3.6 74 292-379 46-121 (284)
404 PF05225 HTH_psq: helix-turn-h 29.6 83 0.0018 20.2 3.1 28 418-448 1-28 (45)
405 PRK02910 light-independent pro 29.6 81 0.0018 32.7 4.8 35 108-147 353-387 (519)
406 PF12695 Abhydrolase_5: Alpha/ 29.3 1.1E+02 0.0023 24.7 4.8 35 11-45 1-35 (145)
407 TIGR01504 glyox_carbo_lig glyo 29.2 3.6E+02 0.0078 28.5 9.6 27 351-377 68-100 (588)
408 COG4394 Uncharacterized protei 29.1 5E+02 0.011 24.5 13.8 39 333-374 239-280 (370)
409 PRK04761 ppnK inorganic polyph 29.1 42 0.0009 30.9 2.3 28 349-378 26-57 (246)
410 PRK06988 putative formyltransf 29.0 5.2E+02 0.011 24.7 10.5 32 9-45 3-34 (312)
411 PF10237 N6-adenineMlase: Prob 28.8 2.6E+02 0.0056 23.9 6.9 27 27-53 14-43 (162)
412 PHA02698 hypothetical protein; 28.7 2E+02 0.0043 20.7 5.0 44 415-475 39-82 (89)
413 PRK08589 short chain dehydroge 28.6 2.4E+02 0.0052 26.0 7.5 33 10-45 7-39 (272)
414 COG0299 PurN Folate-dependent 28.6 2.1E+02 0.0045 25.2 6.2 72 295-379 65-137 (200)
415 PF00282 Pyridoxal_deC: Pyrido 28.6 1.3E+02 0.0028 29.7 5.8 71 351-432 104-191 (373)
416 TIGR01007 eps_fam capsular exo 28.4 1.1E+02 0.0024 26.8 5.0 37 9-45 17-55 (204)
417 TIGR01278 DPOR_BchB light-inde 28.4 81 0.0018 32.6 4.5 35 108-147 355-389 (511)
418 PRK02399 hypothetical protein; 28.3 4.8E+02 0.01 25.9 9.4 96 278-381 185-282 (406)
419 PRK05973 replicative DNA helic 28.3 1.3E+02 0.0028 27.6 5.3 47 10-56 66-112 (237)
420 cd02032 Bchl_like This family 28.3 98 0.0021 28.7 4.8 34 10-43 2-35 (267)
421 COG0467 RAD55 RecA-superfamily 28.3 1.4E+02 0.003 27.6 5.7 48 9-56 24-71 (260)
422 TIGR01281 DPOR_bchL light-inde 28.2 99 0.0022 28.6 4.8 33 10-42 2-34 (268)
423 PF06825 HSBP1: Heat shock fac 28.0 87 0.0019 21.1 3.0 47 420-472 2-48 (54)
424 PRK05784 phosphoribosylamine-- 27.8 2.9E+02 0.0062 28.4 8.3 32 9-45 1-34 (486)
425 PLN02211 methyl indole-3-aceta 27.7 1.1E+02 0.0024 28.5 5.0 37 8-45 18-54 (273)
426 PRK06835 DNA replication prote 27.5 90 0.0019 30.2 4.4 43 9-51 184-226 (329)
427 cd03784 GT1_Gtf_like This fami 27.5 3.1E+02 0.0067 26.9 8.5 36 281-318 3-38 (401)
428 PRK14098 glycogen synthase; Pr 27.5 88 0.0019 32.1 4.6 35 9-45 6-48 (489)
429 COG2120 Uncharacterized protei 27.4 1.1E+02 0.0023 28.0 4.7 38 8-45 10-47 (237)
430 cd01983 Fer4_NifH The Fer4_Nif 27.3 1.4E+02 0.0031 21.7 4.9 33 11-43 2-34 (99)
431 cd01981 Pchlide_reductase_B Pc 27.1 95 0.0021 31.2 4.8 34 109-147 362-395 (430)
432 PRK12474 hypothetical protein; 27.0 3.4E+02 0.0073 28.1 8.9 77 298-378 9-102 (518)
433 PRK10353 3-methyl-adenine DNA 27.0 2.7E+02 0.0059 24.4 6.8 71 375-453 22-99 (187)
434 PRK13982 bifunctional SbtC-lik 26.9 97 0.0021 31.6 4.6 45 8-53 70-114 (475)
435 PRK13057 putative lipid kinase 26.9 2E+02 0.0044 27.0 6.7 65 296-378 14-82 (287)
436 cd01141 TroA_d Periplasmic bin 26.7 92 0.002 26.8 4.1 38 107-147 60-99 (186)
437 PRK08939 primosomal protein Dn 26.6 90 0.0019 29.8 4.2 46 9-54 157-202 (306)
438 TIGR01011 rpsB_bact ribosomal 26.5 4.9E+02 0.011 23.6 9.8 33 118-150 154-188 (225)
439 PRK03094 hypothetical protein; 26.3 62 0.0013 23.8 2.3 21 25-45 10-30 (80)
440 PF01380 SIS: SIS domain SIS d 26.3 1.8E+02 0.0038 23.1 5.5 40 13-52 57-96 (131)
441 PRK06027 purU formyltetrahydro 26.0 3.6E+02 0.0078 25.4 8.1 111 1-149 83-196 (286)
442 cd01020 TroA_b Metal binding p 26.0 5.3E+02 0.011 23.8 10.3 35 419-453 104-140 (264)
443 CHL00067 rps2 ribosomal protei 25.9 5E+02 0.011 23.5 9.3 34 118-151 160-195 (230)
444 PRK14619 NAD(P)H-dependent gly 25.9 85 0.0018 29.9 3.9 33 8-45 4-36 (308)
445 KOG3062 RNA polymerase II elon 25.8 1.3E+02 0.0028 27.2 4.6 34 10-43 3-37 (281)
446 cd03412 CbiK_N Anaerobic cobal 25.6 1.1E+02 0.0024 24.7 4.1 38 280-317 2-41 (127)
447 TIGR02114 coaB_strep phosphopa 25.6 66 0.0014 29.2 3.0 18 26-43 29-46 (227)
448 PF00070 Pyr_redox: Pyridine n 25.4 1E+02 0.0023 22.2 3.6 22 25-46 11-32 (80)
449 PF01372 Melittin: Melittin; 25.2 11 0.00023 20.5 -1.3 18 359-376 1-18 (26)
450 COG0028 IlvB Thiamine pyrophos 25.2 1.8E+02 0.0039 30.4 6.4 30 347-378 63-98 (550)
451 COG2205 KdpD Osmosensitive K+ 25.2 1.8E+02 0.0039 31.7 6.2 47 8-54 22-69 (890)
452 PRK08611 pyruvate oxidase; Pro 25.1 4E+02 0.0086 28.1 9.1 28 351-378 69-102 (576)
453 PRK13055 putative lipid kinase 25.1 3.5E+02 0.0075 26.1 8.0 68 294-378 19-93 (334)
454 TIGR03837 efp_adjacent_2 conse 24.9 93 0.002 30.3 3.9 28 18-45 10-38 (371)
455 PRK08327 acetolactate synthase 24.6 3.8E+02 0.0082 28.2 8.8 80 298-378 11-109 (569)
456 TIGR01285 nifN nitrogenase mol 24.6 1.1E+02 0.0024 30.8 4.7 34 108-146 364-397 (432)
457 TIGR01005 eps_transp_fam exopo 24.5 2E+02 0.0044 31.4 7.0 38 8-45 545-584 (754)
458 PRK07453 protochlorophyllide o 24.5 3.1E+02 0.0068 26.0 7.7 32 10-44 7-38 (322)
459 COG1435 Tdk Thymidine kinase [ 24.4 5E+02 0.011 23.0 8.2 36 11-46 7-42 (201)
460 TIGR01182 eda Entner-Doudoroff 24.3 5.1E+02 0.011 23.0 9.3 35 108-145 72-106 (204)
461 PF01024 Colicin: Colicin pore 24.0 1.4E+02 0.0031 26.0 4.4 36 434-475 29-64 (187)
462 PF02844 GARS_N: Phosphoribosy 23.9 1.1E+02 0.0024 23.7 3.4 37 106-144 51-90 (100)
463 PLN02293 adenine phosphoribosy 23.9 2E+02 0.0043 25.2 5.5 42 103-146 48-91 (187)
464 PRK01231 ppnK inorganic polyph 23.8 1.5E+02 0.0031 28.2 5.0 54 347-432 61-118 (295)
465 PTZ00119 40S ribosomal protein 23.8 2E+02 0.0044 26.6 5.5 58 417-474 82-141 (302)
466 cd03115 SRP The signal recogni 23.8 2.2E+02 0.0048 24.1 5.9 39 11-49 3-41 (173)
467 PRK06395 phosphoribosylamine-- 23.7 4.1E+02 0.0089 26.8 8.5 32 8-44 2-33 (435)
468 PRK12827 short chain dehydroge 23.7 2.6E+02 0.0057 25.0 6.7 37 1-43 1-37 (249)
469 PLN02989 cinnamyl-alcohol dehy 23.6 1.4E+02 0.0031 28.4 5.1 36 1-43 1-36 (325)
470 PRK12361 hypothetical protein; 23.6 3.3E+02 0.0072 28.4 8.1 26 354-379 301-330 (547)
471 TIGR00745 apbA_panE 2-dehydrop 23.5 80 0.0017 29.5 3.3 19 27-45 5-23 (293)
472 cd00860 ThrRS_anticodon ThrRS 23.4 1.6E+02 0.0035 21.5 4.4 34 9-43 2-35 (91)
473 PRK14077 pnk inorganic polypho 23.4 66 0.0014 30.4 2.6 32 345-378 61-96 (287)
474 PRK12724 flagellar biosynthesi 23.4 5.1E+02 0.011 26.1 8.7 42 9-50 224-266 (432)
475 COG2084 MmsB 3-hydroxyisobutyr 23.3 1.2E+02 0.0025 28.7 4.1 31 10-45 2-32 (286)
476 PF02780 Transketolase_C: Tran 23.3 1.2E+02 0.0027 24.1 3.9 33 9-43 10-42 (124)
477 cd01390 HMGB-UBF_HMG-box HMGB- 23.2 2.1E+02 0.0046 19.4 4.7 39 416-454 25-65 (66)
478 PF00391 PEP-utilizers: PEP-ut 23.1 1.1E+02 0.0024 22.4 3.2 28 118-145 29-58 (80)
479 TIGR00877 purD phosphoribosyla 23.1 3.7E+02 0.0079 26.8 8.1 33 9-46 1-33 (423)
480 PRK13236 nitrogenase reductase 22.9 1.6E+02 0.0036 27.8 5.2 34 10-43 7-41 (296)
481 PRK02645 ppnK inorganic polyph 22.8 64 0.0014 30.8 2.4 67 295-378 19-89 (305)
482 COG1748 LYS9 Saccharopine dehy 22.7 5.4E+02 0.012 25.5 8.7 39 9-52 2-42 (389)
483 PRK13398 3-deoxy-7-phosphohept 22.7 6.3E+02 0.014 23.5 12.2 60 369-430 195-260 (266)
484 PRK05876 short chain dehydroge 22.7 1.5E+02 0.0033 27.5 4.9 38 1-44 1-38 (275)
485 PF01081 Aldolase: KDPG and KH 22.6 5.4E+02 0.012 22.7 9.6 41 107-150 71-111 (196)
486 PF10163 EnY2: Transcription f 22.6 1.2E+02 0.0025 22.7 3.3 50 418-474 15-64 (86)
487 PRK01911 ppnK inorganic polyph 22.6 76 0.0017 30.0 2.8 33 344-378 60-96 (292)
488 COG4126 Hydantoin racemase [Am 22.6 4.5E+02 0.0097 23.7 7.3 39 105-145 162-202 (230)
489 COG4081 Uncharacterized protei 22.5 1.1E+02 0.0025 24.6 3.3 36 10-45 5-41 (148)
490 cd08783 Death_MALT1 Death doma 22.4 2.6E+02 0.0055 21.4 4.9 35 380-431 20-54 (97)
491 PRK03708 ppnK inorganic polyph 22.3 57 0.0012 30.6 2.0 29 348-378 57-88 (277)
492 PRK07114 keto-hydroxyglutarate 22.3 5.8E+02 0.013 23.0 10.6 48 223-291 144-192 (222)
493 COG0143 MetG Methionyl-tRNA sy 22.2 1.6E+02 0.0034 30.8 5.2 39 9-47 5-53 (558)
494 TIGR01285 nifN nitrogenase mol 22.1 8.2E+02 0.018 24.6 13.8 80 294-378 320-399 (432)
495 PRK06719 precorrin-2 dehydroge 22.0 1.5E+02 0.0033 25.0 4.3 32 9-45 14-45 (157)
496 PF00289 CPSase_L_chain: Carba 22.0 97 0.0021 24.4 2.9 67 295-366 12-88 (110)
497 TIGR01744 XPRTase xanthine pho 21.9 1.8E+02 0.0039 25.5 4.9 38 107-146 40-79 (191)
498 COG1327 Predicted transcriptio 21.8 1.7E+02 0.0038 24.4 4.3 57 359-430 36-92 (156)
499 PRK12377 putative replication 21.8 1.4E+02 0.003 27.5 4.3 41 9-49 102-142 (248)
500 PRK06546 pyruvate dehydrogenas 21.8 2.9E+02 0.0063 29.1 7.3 28 351-378 67-100 (578)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=3.8e-71 Score=550.07 Aligned_cols=467 Identities=59% Similarity=1.075 Sum_probs=362.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (476)
++||+++|+|++||++|++.||+.|+.||+.|||++++.+...+..........+..++|+.+|+|..++++|++.+...
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 68999999999999999999999999999999999999887766665432111223499999998876567887765543
Q ss_pred CCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 039701 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (476)
..+..+.+..+......+.+.+++++++...+++|||+|.++.|+..+|+++|||++.|++++++...++++........
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~ 167 (491)
T PLN02534 88 TLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAHL 167 (491)
T ss_pred cCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcccc
Confidence 33322344455566667778888888764357899999999999999999999999999999998887655443222211
Q ss_pred CCCCCCcccccCCCCCcccccccccchhhh----HHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccCCceEEeC
Q 039701 168 SVSSDSEYFLVPGLPDRVEITKAQLPEILK----LKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVG 243 (476)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vG 243 (476)
....+..+..+||+|..+.+...+++..+. +..+...+.+....++++++||+.+||+.+++++...++++++.||
T Consensus 168 ~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VG 247 (491)
T PLN02534 168 SVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCVG 247 (491)
T ss_pred cCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEEC
Confidence 122223456789988655567777776432 2333333333334577899999999999999999877778899999
Q ss_pred cccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCC----
Q 039701 244 PVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGD---- 319 (476)
Q Consensus 244 pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~---- 319 (476)
|++.......+...+.......++++.+|||.+++++||||||||......+++.+++.+|+..+++|||+++...
T Consensus 248 PL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~ 327 (491)
T PLN02534 248 PVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSE 327 (491)
T ss_pred cccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccc
Confidence 9975321111110011111112356899999999889999999999999999999999999999999999998421
Q ss_pred ----CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcc
Q 039701 320 ----QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRI 395 (476)
Q Consensus 320 ----~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~ 395 (476)
..|++|.+++++.|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||++++|.+|+
T Consensus 328 ~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~v 407 (491)
T PLN02534 328 LEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRI 407 (491)
T ss_pred hhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcc
Confidence 1257888777789999999999999999999999999999999999999999999999999999999999899999
Q ss_pred eEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHh
Q 039701 396 GVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDE-GEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 474 (476)
Q Consensus 396 G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~-~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~ 474 (476)
|+++....+.+++.+++.+..+++++|.++|+++|.+ +++++++|+||++|++.+++++.+||||++++++|++.|.++
T Consensus 408 Gv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 408 GVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred eEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 9998543221221111101248999999999999973 467899999999999999999999999999999999999765
No 2
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.3e-69 Score=536.08 Aligned_cols=453 Identities=34% Similarity=0.608 Sum_probs=353.8
Q ss_pred CCCC-CCCCcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCC
Q 039701 1 MASQ-AGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGL 79 (476)
Q Consensus 1 m~~~-~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~ 79 (476)
|++. +.+++||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++++... ...+++++.+|+|..+ ++
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~-~l 75 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHP-SI 75 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcC-CC
Confidence 4444 3448999999999999999999999999999999999999988877765421 1125899999887654 78
Q ss_pred CCCCCCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhh
Q 039701 80 PEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHS 159 (476)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 159 (476)
|++.+.....+. +....+......+...+.+++++.+.+++|||+|.+++|+..+|+++|||++.|++++++.++++++
T Consensus 76 PdG~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~ 154 (477)
T PLN02863 76 PSGVENVKDLPP-SGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYS 154 (477)
T ss_pred CCCCcChhhcch-hhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHH
Confidence 887765543331 3344566666677778888877644567999999999999999999999999999999999999888
Q ss_pred hhccccCCC-CCCCCcc---cccCCCCCcccccccccchhhh-------HHHhHHHHHHhhccccEEEecchhhcCHHHH
Q 039701 160 LSVSKAHES-VSSDSEY---FLVPGLPDRVEITKAQLPEILK-------LKSFGEPILAAEMASYGVIVNSFEELEPAYV 228 (476)
Q Consensus 160 ~~~~~~~~~-~~~~~~~---~~~Pg~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 228 (476)
+....+... ...+..+ ..+||++. ++.++++.+++ ...++.+.......++++++||+++||+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 231 (477)
T PLN02863 155 LWREMPTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYL 231 (477)
T ss_pred HhhcccccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHH
Confidence 754322211 0111111 24677765 66667765443 1122222222345677899999999999999
Q ss_pred HHHHhccC-CceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhC
Q 039701 229 EEYKNARD-GKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEAT 307 (476)
Q Consensus 229 ~~~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~ 307 (476)
+++...++ +++++|||++...........+....+..++++.+||+.+++++||||||||....+.+++.+++.+++..
T Consensus 232 ~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~ 311 (477)
T PLN02863 232 EHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKS 311 (477)
T ss_pred HHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhC
Confidence 99988765 68999999975321100000011111112467999999998889999999999999999999999999999
Q ss_pred CCCeEEEEcCCC-------CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccc
Q 039701 308 KKPFIWVIRPGD-------QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFA 380 (476)
Q Consensus 308 ~~~~i~~~~~~~-------~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 380 (476)
+++|||+++... ..++++.+++++.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 312 ~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 391 (477)
T PLN02863 312 GVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAA 391 (477)
T ss_pred CCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccc
Confidence 999999997431 1267788888888999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCCh
Q 039701 381 DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSS 460 (476)
Q Consensus 381 DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~ 460 (476)
||+.||+++++++|+|+++.... .+.++.+++.++|+++|.+ +++||+||+++++.+++++.+||||
T Consensus 392 DQ~~na~~v~~~~gvG~~~~~~~----------~~~~~~~~v~~~v~~~m~~---~~~~r~~a~~l~e~a~~Av~~gGSS 458 (477)
T PLN02863 392 DQFVNASLLVDELKVAVRVCEGA----------DTVPDSDELARVFMESVSE---NQVERERAKELRRAALDAIKERGSS 458 (477)
T ss_pred cchhhHHHHHHhhceeEEeccCC----------CCCcCHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHhccCCcH
Confidence 99999999766899999985320 1246899999999999942 3599999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 039701 461 YLNIKLLIKDILQQA 475 (476)
Q Consensus 461 ~~~~~~~~~~i~~~~ 475 (476)
.+++++|++.|.++.
T Consensus 459 ~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 459 VKDLDGFVKHVVELG 473 (477)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998763
No 3
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=5e-67 Score=526.65 Aligned_cols=463 Identities=45% Similarity=0.823 Sum_probs=348.7
Q ss_pred CCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhc--ccCCCceEEEEeeCCCcccC
Q 039701 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERG--IQSGLRIQVIEFYFPCQEVG 78 (476)
Q Consensus 1 m~~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~--~~~g~~i~~~~i~~~~~~~~ 78 (476)
|++. ++||+|+|+|++||++|++.||++|++|||+|||++++.+...+++..... ...+..+++..+++|..+++
T Consensus 1 ~~~~---~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~g 77 (482)
T PLN03007 1 MNHE---KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELG 77 (482)
T ss_pred CCCC---CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCC
Confidence 5554 569999999999999999999999999999999999998887776543221 01122356777777765556
Q ss_pred CCCCCCCCCCCC---C---cCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHH
Q 039701 79 LPEGCESWDKLP---S---MALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCF 152 (476)
Q Consensus 79 ~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~ 152 (476)
+|++.+.....+ . ......+......+.+.+++++++ .++|+||+|.++.|+..+|+++|||++.|++++++
T Consensus 78 lP~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~ 155 (482)
T PLN03007 78 LPEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYF 155 (482)
T ss_pred CCCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHH
Confidence 776654432111 1 122333444555677788888877 68999999999999999999999999999999988
Q ss_pred HHHHHhhhhccccCCCCCCCCcccccCCCCCcccccccccchhhh---HHHhHHHHHHhhccccEEEecchhhcCHHHHH
Q 039701 153 CLLCLHSLSVSKAHESVSSDSEYFLVPGLPDRVEITKAQLPEILK---LKSFGEPILAAEMASYGVIVNSFEELEPAYVE 229 (476)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 229 (476)
..+.++......+.........+..+||+|..+.++..+++..-. +..+.....+...+++++++|++.+||+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~ 235 (482)
T PLN03007 156 SLCASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYAD 235 (482)
T ss_pred HHHHHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHH
Confidence 877766543322211111111233478887433333333432111 34444455555677889999999999999999
Q ss_pred HHHhccCCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCC
Q 039701 230 EYKNARDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKK 309 (476)
Q Consensus 230 ~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~ 309 (476)
.++...+.++++|||+............+....+..+.++.+||+.+++++||||||||+...+.+++.+++.+++..++
T Consensus 236 ~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~ 315 (482)
T PLN03007 236 FYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQ 315 (482)
T ss_pred HHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCC
Confidence 99877667899999986532211000011111112246789999999888999999999988889999999999999999
Q ss_pred CeEEEEcCCC-------CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccc
Q 039701 310 PFIWVIRPGD-------QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQ 382 (476)
Q Consensus 310 ~~i~~~~~~~-------~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ 382 (476)
+|||+++... ..+++|.+++.+.|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||
T Consensus 316 ~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ 395 (482)
T PLN03007 316 NFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQ 395 (482)
T ss_pred CEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhh
Confidence 9999998531 126788888889999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHH
Q 039701 383 FCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYL 462 (476)
Q Consensus 383 ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~ 462 (476)
+.||+++++.+++|..+...+.. .. +.+.+++++|+++|+++|.| +++++||+||+++++.+++++.+||||++
T Consensus 396 ~~na~~~~~~~~~G~~~~~~~~~--~~---~~~~~~~~~l~~av~~~m~~-~~~~~~r~~a~~~~~~a~~a~~~gGsS~~ 469 (482)
T PLN03007 396 FYNEKLVTQVLRTGVSVGAKKLV--KV---KGDFISREKVEKAVREVIVG-EEAEERRLRAKKLAEMAKAAVEEGGSSFN 469 (482)
T ss_pred hhhHHHHHHhhcceeEecccccc--cc---ccCcccHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999986667777776321000 00 01258999999999999986 57889999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 039701 463 NIKLLIKDILQQ 474 (476)
Q Consensus 463 ~~~~~~~~i~~~ 474 (476)
++++|++.|.++
T Consensus 470 ~l~~~v~~~~~~ 481 (482)
T PLN03007 470 DLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHHhc
Confidence 999999998754
No 4
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=7.8e-67 Score=517.12 Aligned_cols=428 Identities=27% Similarity=0.437 Sum_probs=337.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHH-HCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLA-QHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW 86 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~-~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 86 (476)
++||+++|+|++||++|++.||+.|+ ++|++|||++++.+...+.+.... ..+++++.+|++..+ ++++...
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~----~~~i~~~~lp~p~~~-glp~~~~-- 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN----STGVDIVGLPSPDIS-GLVDPSA-- 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc----CCCceEEECCCcccc-CCCCCCc--
Confidence 67999999999999999999999998 789999999999876655332211 125899998876442 4432110
Q ss_pred CCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccc-c
Q 039701 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK-A 165 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~-~ 165 (476)
.....+......+.+.+++++++...+|+|||+|.+++|+..+|+++|||++.|+++++..++++.+.+... .
T Consensus 78 ------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~ 151 (481)
T PLN02992 78 ------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKD 151 (481)
T ss_pred ------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccc
Confidence 112233344455667788888764457899999999999999999999999999999998887766554211 1
Q ss_pred CC-CCCCCCcccccCCCCCcccccccccchhhh-----HHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhc--c--
Q 039701 166 HE-SVSSDSEYFLVPGLPDRVEITKAQLPEILK-----LKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNA--R-- 235 (476)
Q Consensus 166 ~~-~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--~-- 235 (476)
.. ....+.++..+||++. ++..+++..+. ...++.+......+++++++||+.+||+.+++++... +
T Consensus 152 ~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~ 228 (481)
T PLN02992 152 IKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGR 228 (481)
T ss_pred cccccccCCCCcccCCCCc---cCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccccc
Confidence 11 0001123456888875 55566664332 1223333444566788999999999999999998642 1
Q ss_pred --CCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEE
Q 039701 236 --DGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIW 313 (476)
Q Consensus 236 --~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~ 313 (476)
.++++.|||++...... ..++++.+|||++++++||||||||...++.+++.+|+.+|+..+++|||
T Consensus 229 ~~~~~v~~VGPl~~~~~~~-----------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 297 (481)
T PLN02992 229 VARVPVYPIGPLCRPIQSS-----------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVW 297 (481)
T ss_pred ccCCceEEecCccCCcCCC-----------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEE
Confidence 25799999997532110 12457999999998889999999999999999999999999999999999
Q ss_pred EEcCC------------------C----CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCC
Q 039701 314 VIRPG------------------D----QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGL 371 (476)
Q Consensus 314 ~~~~~------------------~----~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~Gv 371 (476)
+++.. + ..|++|.++++..|+++.+|+||.+||+|+++++||||||+||++||+++||
T Consensus 298 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GV 377 (481)
T PLN02992 298 VVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGV 377 (481)
T ss_pred EEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCC
Confidence 99531 1 1267888888888999999999999999999999999999999999999999
Q ss_pred CEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 039701 372 PMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAK 451 (476)
Q Consensus 372 P~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~ 451 (476)
|||++|+++||+.||+++++++|+|+.++.. ++.++.++|+++|+++|.| ++++++|++|++++++++
T Consensus 378 P~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-----------~~~~~~~~l~~av~~vm~~-~~g~~~r~~a~~~~~~a~ 445 (481)
T PLN02992 378 PMIAWPLFAEQNMNAALLSDELGIAVRSDDP-----------KEVISRSKIEALVRKVMVE-EEGEEMRRKVKKLRDTAE 445 (481)
T ss_pred CEEecCccchhHHHHHHHHHHhCeeEEecCC-----------CCcccHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHH
Confidence 9999999999999999995599999999753 1369999999999999986 478999999999999999
Q ss_pred HHHh--hCCChHHHHHHHHHHHHHh
Q 039701 452 TAIE--EGGSSYLNIKLLIKDILQQ 474 (476)
Q Consensus 452 ~~~~--~gg~~~~~~~~~~~~i~~~ 474 (476)
+++. +||||++++++|++.+.+.
T Consensus 446 ~Av~~~~GGSS~~~l~~~v~~~~~~ 470 (481)
T PLN02992 446 MSLSIDGGGVAHESLCRVTKECQRF 470 (481)
T ss_pred HHhcCCCCCchHHHHHHHHHHHHHH
Confidence 9994 6999999999999998754
No 5
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.8e-66 Score=513.04 Aligned_cols=426 Identities=26% Similarity=0.467 Sum_probs=329.2
Q ss_pred CCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCC
Q 039701 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLP 80 (476)
Q Consensus 1 m~~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~ 80 (476)
|+.... ++||+++|+|++||++|++.||+.|+.||+.|||++++.+... .. ....+++|..+| +++|
T Consensus 1 ~~~~~~-~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-----~~~~~i~~~~ip-----~glp 67 (451)
T PLN02410 1 MEEKPA-RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-----DDFTDFQFVTIP-----ESLP 67 (451)
T ss_pred CCcCCC-CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-----cCCCCeEEEeCC-----CCCC
Confidence 665555 7899999999999999999999999999999999999876421 11 011248888876 2455
Q ss_pred CCC-CCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhc----CCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHH
Q 039701 81 EGC-ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEI----QPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLL 155 (476)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~ 155 (476)
++. +.. .....+......+...++++++++ ..+++|||+|.++.|+..+|+++|||++.|++++++.++
T Consensus 68 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~ 141 (451)
T PLN02410 68 ESDFKNL------GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFV 141 (451)
T ss_pred ccccccc------CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHH
Confidence 531 211 112222223334455566655542 245799999999999999999999999999999999988
Q ss_pred HHhhhhcccc------CCCCCCCCcccccCCCCCcccccccccchhhh-----HHHhHHHHHHhhccccEEEecchhhcC
Q 039701 156 CLHSLSVSKA------HESVSSDSEYFLVPGLPDRVEITKAQLPEILK-----LKSFGEPILAAEMASYGVIVNSFEELE 224 (476)
Q Consensus 156 ~~~~~~~~~~------~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~l~ 224 (476)
+++++..... ..... ...+..+||++. ++..+++.... +..++.... ...+++++++||+++||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE 216 (451)
T PLN02410 142 CRSVFDKLYANNVLAPLKEPK-GQQNELVPEFHP---LRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLE 216 (451)
T ss_pred HHHHHHHHHhccCCCCccccc-cCccccCCCCCC---CChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhh
Confidence 7776532211 11110 112345788765 44455554321 122222211 24578899999999999
Q ss_pred HHHHHHHHhccCCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHH
Q 039701 225 PAYVEEYKNARDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGL 304 (476)
Q Consensus 225 ~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~ 304 (476)
+.+++++....++++++|||+....... ...+..+.++.+|||++++++||||||||....+.+++.+++.+|
T Consensus 217 ~~~~~~l~~~~~~~v~~vGpl~~~~~~~-------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL 289 (451)
T PLN02410 217 SSSLSRLQQQLQIPVYPIGPLHLVASAP-------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGL 289 (451)
T ss_pred HHHHHHHHhccCCCEEEecccccccCCC-------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHH
Confidence 9999999877777999999997542110 000112346789999998889999999999999999999999999
Q ss_pred HhCCCCeEEEEcCCC--------CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecc
Q 039701 305 EATKKPFIWVIRPGD--------QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTW 376 (476)
Q Consensus 305 ~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 376 (476)
+..+++|||+++.+. ..+++|.+++ ++|.++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 290 e~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~-~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~ 368 (451)
T PLN02410 290 DSSNQQFLWVIRPGSVRGSEWIESLPKEFSKII-SGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICK 368 (451)
T ss_pred HhcCCCeEEEEccCcccccchhhcCChhHHHhc-cCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEec
Confidence 999999999998431 1367888877 5777888999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhh
Q 039701 377 PFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEE 456 (476)
Q Consensus 377 P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~ 456 (476)
|+++||+.||+++++.+|+|+.+. . .+++++|+++|+++|.+++ +++||+||+++++++++++.+
T Consensus 369 P~~~DQ~~na~~~~~~~~~G~~~~-~-------------~~~~~~v~~av~~lm~~~~-~~~~r~~a~~l~~~~~~a~~~ 433 (451)
T PLN02410 369 PFSSDQKVNARYLECVWKIGIQVE-G-------------DLDRGAVERAVKRLMVEEE-GEEMRKRAISLKEQLRASVIS 433 (451)
T ss_pred cccccCHHHHHHHHHHhCeeEEeC-C-------------cccHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999975669999996 3 5899999999999998754 889999999999999999999
Q ss_pred CCChHHHHHHHHHHHHH
Q 039701 457 GGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 457 gg~~~~~~~~~~~~i~~ 473 (476)
||||++++++|++.|..
T Consensus 434 gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 434 GGSSHNSLEEFVHFMRT 450 (451)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999864
No 6
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=7.7e-66 Score=511.50 Aligned_cols=444 Identities=27% Similarity=0.469 Sum_probs=334.7
Q ss_pred CCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhh-c---ccCCC-ceEEEEeeCCCc
Q 039701 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIER-G---IQSGL-RIQVIEFYFPCQ 75 (476)
Q Consensus 1 m~~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~-~---~~~g~-~i~~~~i~~~~~ 75 (476)
|+++.. ++||+|+|+|++||++|++.||+.|+.+|..|||++++.+...+.+.... . ...+. .++|..+|
T Consensus 1 ~~~~~~-~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p---- 75 (480)
T PLN02555 1 MESESS-LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE---- 75 (480)
T ss_pred CCCCCC-CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC----
Confidence 888877 89999999999999999999999999999999999999877665531100 0 00111 24444433
Q ss_pred ccCCCCCCCCCCCCCCcCcHHHHHHHHH-HchHHHHHHHHhc--CCC-CeEEEecCCCchhHHHHhHcCCCcEEEecchH
Q 039701 76 EVGLPEGCESWDKLPSMALLPKFFAAIE-MLRLPLETLFKEI--QPK-PGCLISDVCLPWTVSSACKFNVPRIVFHGFSC 151 (476)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~--~~~-~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~ 151 (476)
+++|++.+.. .+ +..++.... .+.+.+++++++. ..+ ++|||+|.++.|+..+|+++|||++.|+++++
T Consensus 76 -dglp~~~~~~-----~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a 148 (480)
T PLN02555 76 -DGWAEDDPRR-----QD-LDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSC 148 (480)
T ss_pred -CCCCCCcccc-----cC-HHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccH
Confidence 3566543321 12 223333333 4566777777643 124 49999999999999999999999999999999
Q ss_pred HHHHHHhhhhccc-cCCCCCCCCcccccCCCCCcccccccccchhhh-------HHHhHHHHHHhhccccEEEecchhhc
Q 039701 152 FCLLCLHSLSVSK-AHESVSSDSEYFLVPGLPDRVEITKAQLPEILK-------LKSFGEPILAAEMASYGVIVNSFEEL 223 (476)
Q Consensus 152 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~l 223 (476)
+.++++++..... .......+..+..+||+|. +..++++.++. +.+++.+......+++++++||+.+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eL 225 (480)
T PLN02555 149 ACFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQEL 225 (480)
T ss_pred HHHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHH
Confidence 9998887764321 1111111123456899875 55566665332 12222233334567889999999999
Q ss_pred CHHHHHHHHhccCCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHH
Q 039701 224 EPAYVEEYKNARDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLG 303 (476)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a 303 (476)
|+.+++.+.... + ++.|||++........ ......+..++++.+||+.+++++||||||||+...+.+++.+|+.+
T Consensus 226 E~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~ 301 (480)
T PLN02555 226 EKEIIDYMSKLC-P-IKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYG 301 (480)
T ss_pred hHHHHHHHhhCC-C-EEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHH
Confidence 999999887643 3 9999999754211100 00111112356799999999888899999999999999999999999
Q ss_pred HHhCCCCeEEEEcCCC--------CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEec
Q 039701 304 LEATKKPFIWVIRPGD--------QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVT 375 (476)
Q Consensus 304 ~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~ 375 (476)
++..+++|||+++... ..++++.++. ++|+++.+|+||.+||.|+++++|||||||||++||+++|||||+
T Consensus 302 l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~ 380 (480)
T PLN02555 302 VLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVC 380 (480)
T ss_pred HHhcCCeEEEEEecCcccccchhhcCChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEe
Confidence 9999999999987321 1255666554 578888899999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh
Q 039701 376 WPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIE 455 (476)
Q Consensus 376 ~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~ 455 (476)
+|+++||+.||+++++++|+|+++...+ ...+.++.++|.++|+++|.+ ++++++|+||++|++++++++.
T Consensus 381 ~P~~~DQ~~Na~~~~~~~gvGv~l~~~~--------~~~~~v~~~~v~~~v~~vm~~-~~g~~~r~ra~~l~~~a~~A~~ 451 (480)
T PLN02555 381 FPQWGDQVTDAVYLVDVFKTGVRLCRGE--------AENKLITREEVAECLLEATVG-EKAAELKQNALKWKEEAEAAVA 451 (480)
T ss_pred CCCccccHHHHHHHHHHhCceEEccCCc--------cccCcCcHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999976779999995310 001268999999999999985 5789999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHH
Q 039701 456 EGGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 456 ~gg~~~~~~~~~~~~i~~ 473 (476)
+||||++++++|+++|.+
T Consensus 452 egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 452 EGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 999999999999999874
No 7
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=9.2e-66 Score=506.43 Aligned_cols=430 Identities=29% Similarity=0.460 Sum_probs=336.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhh--hHhhhcccCCCceEEEEeeCCCcccCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQH-GALVTIVTTPMNAARFQ--NVIERGIQSGLRIQVIEFYFPCQEVGLPEGCE 84 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~~--~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~ 84 (476)
++||+|+|+|++||++|++.||+.|+.+ |..|||++++.+...+. ....... ...+++++.+|++..+ +++.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~~-~l~~--- 77 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDVD-NLVE--- 77 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCccc-cCCC---
Confidence 6799999999999999999999999987 99999998887654431 1111111 1124999998865422 2211
Q ss_pred CCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCC-cEEEecchHHHHHHHhhhhcc
Q 039701 85 SWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVP-RIVFHGFSCFCLLCLHSLSVS 163 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~~~~ 163 (476)
.. . +....+......+.+.++++++++..+++|||+|.+++|+..+|+++||| .+.+++++++..+++++.+..
T Consensus 78 -~~---~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~ 152 (470)
T PLN03015 78 -PD---A-TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVL 152 (470)
T ss_pred -CC---c-cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhh
Confidence 00 1 23345666666788889999987444789999999999999999999999 577888888877777765431
Q ss_pred c-cCCC-CCCCCcccccCCCCCcccccccccchhhh------HHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhcc
Q 039701 164 K-AHES-VSSDSEYFLVPGLPDRVEITKAQLPEILK------LKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNAR 235 (476)
Q Consensus 164 ~-~~~~-~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 235 (476)
. .... .....++..+||+|. ++..+++..+. +..+.. ......+++++++||+.+||+.+++.+...+
T Consensus 153 ~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~ 228 (470)
T PLN03015 153 DTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRSDQQYKECVR-SGLEVPMSDGVLVNTWEELQGNTLAALREDM 228 (470)
T ss_pred hcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCCcHHHHHHHH-HHHhcccCCEEEEechHHHhHHHHHHHHhhc
Confidence 1 1111 001123456899986 66777775432 233332 2234678999999999999999999997642
Q ss_pred ------CCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCC
Q 039701 236 ------DGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKK 309 (476)
Q Consensus 236 ------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~ 309 (476)
.+++++|||++..... ...++++.+|||++++++||||||||....+.+++.+|+.+|+..++
T Consensus 229 ~~~~~~~~~v~~VGPl~~~~~~-----------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~ 297 (470)
T PLN03015 229 ELNRVMKVPVYPIGPIVRTNVH-----------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQ 297 (470)
T ss_pred ccccccCCceEEecCCCCCccc-----------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCC
Confidence 2569999999742110 01235799999999888999999999999999999999999999999
Q ss_pred CeEEEEcCC-----------C----CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEe
Q 039701 310 PFIWVIRPG-----------D----QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMV 374 (476)
Q Consensus 310 ~~i~~~~~~-----------~----~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l 374 (476)
+|||+++.. + ..+++|.++++..++++.+|+||.++|+|+++++|||||||||++||+++|||||
T Consensus 298 ~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v 377 (470)
T PLN03015 298 RFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIV 377 (470)
T ss_pred cEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEE
Confidence 999999631 0 1266788887777889999999999999999999999999999999999999999
Q ss_pred cccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHH
Q 039701 375 TWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDE-GEERDERRRRAREYGETAKTA 453 (476)
Q Consensus 375 ~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~-~~~~~~~r~~a~~l~~~~~~~ 453 (476)
++|+++||+.||+++++.+|+|+++.... .++.++.++|+++|+++|.. +++++++|+||++|+++++++
T Consensus 378 ~~P~~~DQ~~na~~~~~~~gvg~~~~~~~---------~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~A 448 (470)
T PLN03015 378 AWPLYAEQWMNATLLTEEIGVAVRTSELP---------SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERA 448 (470)
T ss_pred ecccccchHHHHHHHHHHhCeeEEecccc---------cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999977999999995210 01368999999999999963 367899999999999999999
Q ss_pred HhhCCChHHHHHHHHHHH
Q 039701 454 IEEGGSSYLNIKLLIKDI 471 (476)
Q Consensus 454 ~~~gg~~~~~~~~~~~~i 471 (476)
+.+||||++++++|++++
T Consensus 449 v~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 449 WSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred hcCCCcHHHHHHHHHHhc
Confidence 999999999999999886
No 8
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.5e-65 Score=503.56 Aligned_cols=430 Identities=25% Similarity=0.416 Sum_probs=336.1
Q ss_pred CCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCC
Q 039701 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLP 80 (476)
Q Consensus 1 m~~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~ 80 (476)
|.++ ++||+|+|+|++||++|++.||+.|+.+|+.|||++++.+...+.+. .....+..+.+..+|. . +++|
T Consensus 1 ~~~~---~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~--~-~glp 72 (453)
T PLN02764 1 MGGL---KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPH--V-DGLP 72 (453)
T ss_pred CCCC---CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCC--c-CCCC
Confidence 5555 67999999999999999999999999999999999999876655542 1111112255555543 2 3677
Q ss_pred CCCCCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhh
Q 039701 81 EGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSL 160 (476)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 160 (476)
++.+.....+. .....+...+..+.+.+.+++++ .++||||+|. +.|+..+|+++|||++.|+++++..+++++.
T Consensus 73 ~g~e~~~~~~~-~~~~~~~~a~~~~~~~~~~~l~~--~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~- 147 (453)
T PLN02764 73 VGTETVSEIPV-TSADLLMSAMDLTRDQVEVVVRA--VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV- 147 (453)
T ss_pred CcccccccCCh-hHHHHHHHHHHHhHHHHHHHHHh--CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-
Confidence 66554433331 23445666667778889999988 6889999995 8899999999999999999999988877653
Q ss_pred hccccCCCCCCCCcccccCCCCCc-ccccccccchhhh---------HHHhHHHHHHhhccccEEEecchhhcCHHHHHH
Q 039701 161 SVSKAHESVSSDSEYFLVPGLPDR-VEITKAQLPEILK---------LKSFGEPILAAEMASYGVIVNSFEELEPAYVEE 230 (476)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~Pg~~~~-~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 230 (476)
.. ... ..++||+|.. +.++.++++.+.. +..+..++.....+++++++||+.+||+.++++
T Consensus 148 ~~----~~~-----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~ 218 (453)
T PLN02764 148 PG----GEL-----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDY 218 (453)
T ss_pred cc----ccC-----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHH
Confidence 11 001 1224777631 1233344433211 223444443445678899999999999999999
Q ss_pred HHhccCCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCC
Q 039701 231 YKNARDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKP 310 (476)
Q Consensus 231 ~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~ 310 (476)
+....+++++.|||++...... ...+.++.+|||.+++++||||||||....+.+++.+++.+|+..+.+
T Consensus 219 ~~~~~~~~v~~VGPL~~~~~~~----------~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~p 288 (453)
T PLN02764 219 IEKHCRKKVLLTGPVFPEPDKT----------RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSP 288 (453)
T ss_pred HHhhcCCcEEEeccCccCcccc----------ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCC
Confidence 9775557899999997532100 001467999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCC-------CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccch
Q 039701 311 FIWVIRPGD-------QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQF 383 (476)
Q Consensus 311 ~i~~~~~~~-------~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 383 (476)
++|+++... ..|++|.++++..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+
T Consensus 289 flwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~ 368 (453)
T PLN02764 289 FLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQV 368 (453)
T ss_pred eEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchH
Confidence 999998421 1378888888888999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHhhCCChHH
Q 039701 384 CNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG-EERDERRRRAREYGETAKTAIEEGGSSYL 462 (476)
Q Consensus 384 ~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~-~~~~~~r~~a~~l~~~~~~~~~~gg~~~~ 462 (476)
.||+++++.+|+|+.+...+ .+.++.++|+++|+++|+++ ++++++|+|+++++++++ +||||.+
T Consensus 369 ~na~~l~~~~g~gv~~~~~~----------~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~ 434 (453)
T PLN02764 369 LNTRLLSDELKVSVEVAREE----------TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTG 434 (453)
T ss_pred HHHHHHHHHhceEEEecccc----------CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHH
Confidence 99999965689998875320 12589999999999999876 678899999999999984 4899999
Q ss_pred HHHHHHHHHHHhcC
Q 039701 463 NIKLLIKDILQQAK 476 (476)
Q Consensus 463 ~~~~~~~~i~~~~~ 476 (476)
++++|+++|..+++
T Consensus 435 ~l~~lv~~~~~~~~ 448 (453)
T PLN02764 435 YVDNFIESLQDLVS 448 (453)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998763
No 9
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=7.1e-66 Score=508.83 Aligned_cols=424 Identities=24% Similarity=0.375 Sum_probs=332.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (476)
++||+++|+|++||++|++.||+.|++|||+|||++++.+...+.+.. .....+++..++++.. +++|++.+...
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~-dgLp~g~~~~~ 78 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPV-NGLPAGAETTS 78 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCc-cCCCCCccccc
Confidence 789999999999999999999999999999999999987766554421 1112477887776532 36666644322
Q ss_pred CCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 039701 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (476)
... ......+......+.+.+++++++ .++||||+| ++.|+..+|+++|||++.|+++++.... +++... .
T Consensus 79 ~l~-~~l~~~~~~~~~~~~~~l~~~L~~--~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~ 149 (442)
T PLN02208 79 DIP-ISMDNLLSEALDLTRDQVEAAVRA--LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----G 149 (442)
T ss_pred chh-HHHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----c
Confidence 111 012233455566778888888887 789999999 5789999999999999999999988654 333221 1
Q ss_pred CCCCCCcccccCCCCCc-ccccccccchhhh----HHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccCCceEEe
Q 039701 168 SVSSDSEYFLVPGLPDR-VEITKAQLPEILK----LKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCV 242 (476)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~-~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~v 242 (476)
.. ...+||+|.. +.+...+++.+.. +..+..++.....+++++++||+.+||+.+++++...+++++++|
T Consensus 150 ~~-----~~~~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~v 224 (442)
T PLN02208 150 KL-----GVPPPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLT 224 (442)
T ss_pred cc-----CCCCCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEE
Confidence 01 1235777752 2345555553211 333444444455678999999999999999999988777899999
Q ss_pred CcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCC-C--
Q 039701 243 GPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPG-D-- 319 (476)
Q Consensus 243 Gpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~-~-- 319 (476)
||+....... ...++++.+|||.+++++||||||||....+.+++.+++.+++..+.+++|+.+.. .
T Consensus 225 Gpl~~~~~~~----------~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~ 294 (442)
T PLN02208 225 GPMFPEPDTS----------KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSS 294 (442)
T ss_pred eecccCcCCC----------CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccc
Confidence 9997542200 01257899999999888999999999998899999999998888888888888743 1
Q ss_pred ----CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcc
Q 039701 320 ----QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRI 395 (476)
Q Consensus 320 ----~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~ 395 (476)
..|++|.++++..|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+
T Consensus 295 ~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~ 374 (442)
T PLN02208 295 TVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEV 374 (442)
T ss_pred chhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhce
Confidence 1377888888889999999999999999999999999999999999999999999999999999999998656999
Q ss_pred eEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHh
Q 039701 396 GVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG-EERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 474 (476)
Q Consensus 396 G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~-~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~ 474 (476)
|+.++..+ ++.+++++|+++|+++|+++ ++++++|+||+++++++. +||||.+++++|++.|.++
T Consensus 375 gv~~~~~~----------~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 375 SVEVSREK----------TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred eEEecccc----------CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHh
Confidence 99997541 12499999999999999876 578999999999999973 3889999999999999765
No 10
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.6e-65 Score=509.69 Aligned_cols=439 Identities=27% Similarity=0.472 Sum_probs=330.8
Q ss_pred CCCCCCCCcEEEEEcCCCccChHHHHHHHHH--HHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccC
Q 039701 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARL--LAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVG 78 (476)
Q Consensus 1 m~~~~~~~~~vl~~~~p~~GHv~P~l~La~~--L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~ 78 (476)
|++..+++.||+|+|+|++||++|++.||++ |++||++|||++++.+.+.+.... .....+++..++ ++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~-----~g 71 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFS-----DG 71 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECC-----CC
Confidence 6666555889999999999999999999999 559999999999998766553321 011135555443 35
Q ss_pred CCCCCCCCCCCCCcCcHHHHHHHH-HHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHH
Q 039701 79 LPEGCESWDKLPSMALLPKFFAAI-EMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCL 157 (476)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~ 157 (476)
+|++.. . + ...+...+ ..+.+.+++++++ .++||||+|.++.|+..+|+++|||.+.|++.++..+.++
T Consensus 72 lp~~~~------~-~-~~~~~~~~~~~~~~~l~~~l~~--~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~ 141 (456)
T PLN02210 72 LPKDDP------R-A-PETLLKSLNKVGAKNLSKIIEE--KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVY 141 (456)
T ss_pred CCCCcc------c-C-HHHHHHHHHHhhhHHHHHHHhc--CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHH
Confidence 655431 0 1 11233333 3556677888877 6899999999999999999999999999999999888877
Q ss_pred hhhhccc-cCCCCCCCCcccccCCCCCcccccccccchhhh------HHHhHHHHHHhhccccEEEecchhhcCHHHHHH
Q 039701 158 HSLSVSK-AHESVSSDSEYFLVPGLPDRVEITKAQLPEILK------LKSFGEPILAAEMASYGVIVNSFEELEPAYVEE 230 (476)
Q Consensus 158 ~~~~~~~-~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 230 (476)
.+..... ..........+..+||++. +..++++..+. +..+..++.+....++++++||+.+||+.+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 218 (456)
T PLN02210 142 YRYYMKTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIES 218 (456)
T ss_pred HhhhhccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHH
Confidence 7653211 1111111112345788874 55566665432 223333443445567899999999999999999
Q ss_pred HHhccCCceEEeCcccCCCC--CcccccccCC--CCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHh
Q 039701 231 YKNARDGKVWCVGPVSLCNK--EDMDKLERGD--KTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEA 306 (476)
Q Consensus 231 ~~~~~~~~v~~vGpl~~~~~--~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~ 306 (476)
+... +++++|||++.... .......... ..+..+.++.+||+.+++++||||||||....+.+++.+++.+++.
T Consensus 219 l~~~--~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~ 296 (456)
T PLN02210 219 MADL--KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKN 296 (456)
T ss_pred Hhhc--CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHh
Confidence 8763 68999999975311 0000000000 0112356789999999888999999999998899999999999999
Q ss_pred CCCCeEEEEcCCCC--CchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchh
Q 039701 307 TKKPFIWVIRPGDQ--AFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFC 384 (476)
Q Consensus 307 ~~~~~i~~~~~~~~--~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~ 384 (476)
.+++|||+++.... .++.+.++..+++.++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 297 ~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~ 376 (456)
T PLN02210 297 RGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPI 376 (456)
T ss_pred CCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHH
Confidence 99999999975321 2445666553455677899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHH
Q 039701 385 NEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNI 464 (476)
Q Consensus 385 ~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~ 464 (476)
||+++++++|+|+.+...+ .++.++.++|+++|+++|.+ ++++++|+||++|++..++++++||||++++
T Consensus 377 na~~~~~~~g~G~~l~~~~---------~~~~~~~~~l~~av~~~m~~-~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l 446 (456)
T PLN02210 377 DARLLVDVFGIGVRMRNDA---------VDGELKVEEVERCIEAVTEG-PAAADIRRRAAELKHVARLALAPGGSSARNL 446 (456)
T ss_pred HHHHHHHHhCeEEEEeccc---------cCCcCCHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999964499999986431 01368999999999999975 5688999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 039701 465 KLLIKDILQ 473 (476)
Q Consensus 465 ~~~~~~i~~ 473 (476)
++|++.|..
T Consensus 447 ~~~v~~~~~ 455 (456)
T PLN02210 447 DLFISDITI 455 (456)
T ss_pred HHHHHHHhc
Confidence 999998853
No 11
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.9e-65 Score=501.11 Aligned_cols=424 Identities=25% Similarity=0.449 Sum_probs=327.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCC-CCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC-ESW 86 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~-~~~ 86 (476)
+.||+|+|+|++||++|++.||+.|+.+|+.|||++++.+...+... ...+++|+.+| +++|++. +..
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~~~~ 73 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGFSSA 73 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCcccccc
Confidence 78999999999999999999999999999999999999766544321 12359999886 3566532 221
Q ss_pred CCCCCcCcHHHHHHHHH-HchHHHHHHHHhc--CCCC-eEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhc
Q 039701 87 DKLPSMALLPKFFAAIE-MLRLPLETLFKEI--QPKP-GCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSV 162 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~--~~~~-D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 162 (476)
. + ...+..... .+.+.+++++++. +.+| +|||+|.+++|+..+|+++|||++.|++++++.+.++++...
T Consensus 74 ~-----~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~ 147 (449)
T PLN02173 74 G-----S-VPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYI 147 (449)
T ss_pred c-----C-HHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHh
Confidence 1 1 223444433 5667777777653 1245 999999999999999999999999999998888766554211
Q ss_pred cccCCCCCCCCcccccCCCCCcccccccccchhhh-------HHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhcc
Q 039701 163 SKAHESVSSDSEYFLVPGLPDRVEITKAQLPEILK-------LKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNAR 235 (476)
Q Consensus 163 ~~~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 235 (476)
.. + .....+||+|. +...+++.++. ..+++.+......+++++++||+.+||+.++++++..
T Consensus 148 ---~~--~--~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~- 216 (449)
T PLN02173 148 ---NN--G--SLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV- 216 (449)
T ss_pred ---cc--C--CccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-
Confidence 11 1 12345788875 55566665442 1222222334566788999999999999999998654
Q ss_pred CCceEEeCcccCCCC--Ccc--cccccCCCCC-CCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCC
Q 039701 236 DGKVWCVGPVSLCNK--EDM--DKLERGDKTS-NDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKP 310 (476)
Q Consensus 236 ~~~v~~vGpl~~~~~--~~~--~~~~~~~~~~-~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~ 310 (476)
++++.|||+++... ... ........+. ..++++.+||+.+++++||||||||....+.+++.+++.++ .+.+
T Consensus 217 -~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~ 293 (449)
T PLN02173 217 -CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFS 293 (449)
T ss_pred -CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCC
Confidence 47999999974311 000 0000001110 12346999999999899999999999999999999999999 6778
Q ss_pred eEEEEcCCC--CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHH
Q 039701 311 FIWVIRPGD--QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKL 388 (476)
Q Consensus 311 ~i~~~~~~~--~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~ 388 (476)
|||+++... ..++++.+++.++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 294 flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 373 (449)
T PLN02173 294 YLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKY 373 (449)
T ss_pred EEEEEeccchhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHH
Confidence 999997532 236678777778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 039701 389 VVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLI 468 (476)
Q Consensus 389 v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 468 (476)
+++.+|+|+.+...+ .++.++.++|+++|+++|.| ++++++|+||++++++.++++.+||||++++++|+
T Consensus 374 v~~~~g~Gv~v~~~~---------~~~~~~~e~v~~av~~vm~~-~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v 443 (449)
T PLN02173 374 IQDVWKVGVRVKAEK---------ESGIAKREEIEFSIKEVMEG-EKSKEMKENAGKWRDLAVKSLSEGGSTDININTFV 443 (449)
T ss_pred HHHHhCceEEEeecc---------cCCcccHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 976679999986431 01247999999999999986 55789999999999999999999999999999999
Q ss_pred HHHH
Q 039701 469 KDIL 472 (476)
Q Consensus 469 ~~i~ 472 (476)
++|.
T Consensus 444 ~~~~ 447 (449)
T PLN02173 444 SKIQ 447 (449)
T ss_pred HHhc
Confidence 9884
No 12
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=8e-65 Score=507.83 Aligned_cols=435 Identities=28% Similarity=0.476 Sum_probs=334.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCC----CeEEEEeCCcch----hhhhhHhhhcccCCCceEEEEeeCCCcccCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHG----ALVTIVTTPMNA----ARFQNVIERGIQSGLRIQVIEFYFPCQEVGL 79 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rG----H~Vt~~~~~~~~----~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~ 79 (476)
++||+|+|+|++||++|++.||+.|+.|| +.|||++++.+. ..++..+......+.+++|+.+|++. .
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~----~ 78 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE----P 78 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC----C
Confidence 78999999999999999999999999996 799999987643 23444332111122258899887541 2
Q ss_pred CCCCCCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhh
Q 039701 80 PEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHS 159 (476)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 159 (476)
+++.+ .....+......+.+.+++++++...+++|||+|.++.|+..+|+++|||++.|+++++..++++++
T Consensus 79 p~~~e--------~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~ 150 (480)
T PLN00164 79 PTDAA--------GVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLR 150 (480)
T ss_pred CCccc--------cHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhh
Confidence 22211 1112233345566778888887643356999999999999999999999999999999999888877
Q ss_pred hhccccC-C-CCCCCCcccccCCCCCcccccccccchhhh-----HHHhHHHHHHhhccccEEEecchhhcCHHHHHHHH
Q 039701 160 LSVSKAH-E-SVSSDSEYFLVPGLPDRVEITKAQLPEILK-----LKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYK 232 (476)
Q Consensus 160 ~~~~~~~-~-~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 232 (476)
.+..... . .......+..+||++. ++..++|.+.. ...++....+...+++++++||+.+||+.+++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 227 (480)
T PLN00164 151 LPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIA 227 (480)
T ss_pred hhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHH
Confidence 6432111 0 0111112345788875 55566665332 11222223344567889999999999999999997
Q ss_pred hcc------CCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHh
Q 039701 233 NAR------DGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEA 306 (476)
Q Consensus 233 ~~~------~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~ 306 (476)
... .++++.|||+........ ....++++.+||+++++++||||||||....+.+++.+|+.+|+.
T Consensus 228 ~~~~~~~~~~~~v~~vGPl~~~~~~~~--------~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~ 299 (480)
T PLN00164 228 DGRCTPGRPAPTVYPIGPVISLAFTPP--------AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLER 299 (480)
T ss_pred hccccccCCCCceEEeCCCccccccCC--------CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 642 158999999974321100 011256799999999988999999999988899999999999999
Q ss_pred CCCCeEEEEcCCC--------------CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCC
Q 039701 307 TKKPFIWVIRPGD--------------QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLP 372 (476)
Q Consensus 307 ~~~~~i~~~~~~~--------------~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP 372 (476)
.+++|||+++... ..++++.++++..++++.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 300 s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP 379 (480)
T PLN00164 300 SGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVP 379 (480)
T ss_pred cCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCC
Confidence 9999999998421 02567777777788999999999999999999999999999999999999999
Q ss_pred EecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHH
Q 039701 373 MVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGE-ERDERRRRAREYGETAK 451 (476)
Q Consensus 373 ~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~-~~~~~r~~a~~l~~~~~ 451 (476)
||++|+++||+.||+++++++|+|+.+...+ .+++.++.++|.++|+++|.|++ +++++|+||++++++++
T Consensus 380 ~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~--------~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~ 451 (480)
T PLN00164 380 MAPWPLYAEQHLNAFELVADMGVAVAMKVDR--------KRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACR 451 (480)
T ss_pred EEeCCccccchhHHHHHHHHhCeEEEecccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999988756799999985421 00125799999999999998876 49999999999999999
Q ss_pred HHHhhCCChHHHHHHHHHHHHH
Q 039701 452 TAIEEGGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 452 ~~~~~gg~~~~~~~~~~~~i~~ 473 (476)
+++.+||||++++++|++.|.+
T Consensus 452 ~a~~~gGSS~~~l~~~v~~~~~ 473 (480)
T PLN00164 452 KAVEEGGSSYAALQRLAREIRH 473 (480)
T ss_pred HHhcCCCcHHHHHHHHHHHHHh
Confidence 9999999999999999999875
No 13
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=8.2e-65 Score=501.85 Aligned_cols=427 Identities=25% Similarity=0.421 Sum_probs=330.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (476)
++||+|+|+|++||++|++.||+.|+++|++|||++++.+...++.... ....++|+.+++|..+ ++|++.+...
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~d-GLP~g~e~~~ 78 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPVD-GLPFGAETAS 78 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCcC-CCCCcccccc
Confidence 8999999999999999999999999999999999999987666654311 1124888888776543 6777644333
Q ss_pred CCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 039701 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (476)
..+. .....+......+.+.++++++. .+|||||+|. +.|+..+|+++|||++.|+++++...++++++..
T Consensus 79 ~l~~-~~~~~~~~a~~~l~~~l~~~L~~--~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~----- 149 (446)
T PLN00414 79 DLPN-STKKPIFDAMDLLRDQIEAKVRA--LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA----- 149 (446)
T ss_pred cchh-hHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh-----
Confidence 2221 12334555566777888888876 6899999995 8899999999999999999999988887765221
Q ss_pred CCCCCCcccccCCCCCc-ccccccc--cchhhh-HHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccCCceEEeC
Q 039701 168 SVSSDSEYFLVPGLPDR-VEITKAQ--LPEILK-LKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVG 243 (476)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~-~~~~~~~--l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vG 243 (476)
..+ ...||+|.. +.++..+ ++.++. ....+.+......+++++++||+.+||+.+++++...+++++++||
T Consensus 150 ~~~-----~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VG 224 (446)
T PLN00414 150 ELG-----FPPPDYPLSKVALRGHDANVCSLFANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTG 224 (446)
T ss_pred hcC-----CCCCCCCCCcCcCchhhcccchhhcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEc
Confidence 000 123666531 1122222 222221 1123333444566789999999999999999999876667899999
Q ss_pred cccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCC----
Q 039701 244 PVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGD---- 319 (476)
Q Consensus 244 pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~---- 319 (476)
|++...... . . ...++++.+|||.+++++||||||||....+.+++.+++.+|+..+.+|+|++....
T Consensus 225 Pl~~~~~~~-~----~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~ 296 (446)
T PLN00414 225 PMLPEPQNK-S----G---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSST 296 (446)
T ss_pred ccCCCcccc-c----C---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCccc
Confidence 997532110 0 0 011356889999999999999999999999999999999999999999999997531
Q ss_pred ---CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcce
Q 039701 320 ---QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIG 396 (476)
Q Consensus 320 ---~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G 396 (476)
..|++|.++++..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++++|+|
T Consensus 297 ~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g 376 (446)
T PLN00414 297 VQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVS 376 (446)
T ss_pred chhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeE
Confidence 13788999888889999999999999999999999999999999999999999999999999999999997689999
Q ss_pred EEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHhc
Q 039701 397 VTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG-EERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQA 475 (476)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~-~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~~ 475 (476)
+.+...+ ++.+++++|+++++++|.|+ ++++++|++|+++++.+.++ ||++.. +++|++.+.+..
T Consensus 377 ~~~~~~~----------~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~---gg~ss~-l~~~v~~~~~~~ 442 (446)
T PLN00414 377 VKVQRED----------SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSP---GLLSGY-ADKFVEALENEV 442 (446)
T ss_pred EEecccc----------CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcC---CCcHHH-HHHHHHHHHHhc
Confidence 9986431 12589999999999999865 56889999999999997544 884433 899999987643
No 14
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.6e-64 Score=500.30 Aligned_cols=442 Identities=28% Similarity=0.476 Sum_probs=336.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (476)
++||+|+|+|++||++|++.||+.|+.||+.|||++++.+...+.+.... ...+++++.+|+|..+ ++|++.+...
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~d-glp~~~~~~~ 81 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSVP-GLPSSAESST 81 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCccC-CCCCCccccc
Confidence 68999999999999999999999999999999999999877666542111 1125999999987654 7776554332
Q ss_pred CCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 039701 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (476)
..+. .....+......+.+.+++++++ .+++|||+|.++.|+..+|+++|||++.|+++++..+++++++.......
T Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 82 DVPY-TKQQLLKKAFDLLEPPLTTFLET--SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred ccch-hhHHHHHHHHHHhHHHHHHHHHh--CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 2211 11234445666778888888887 68999999999999999999999999999999998888766442211111
Q ss_pred CCCCCCccc-ccCCCCC---cccccccccchhhh-------HHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccC
Q 039701 168 SVSSDSEYF-LVPGLPD---RVEITKAQLPEILK-------LKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARD 236 (476)
Q Consensus 168 ~~~~~~~~~-~~Pg~~~---~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 236 (476)
......+.. .+|++.+ .+.+...+++.++. ....+.+......+++++++||+.+||+.+++.+...++
T Consensus 159 ~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~ 238 (472)
T PLN02670 159 DLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYR 238 (472)
T ss_pred cCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhC
Confidence 111111111 2444321 11244456665432 111222333345678899999999999999999987666
Q ss_pred CceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEc
Q 039701 237 GKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIR 316 (476)
Q Consensus 237 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~ 316 (476)
+++++|||+......... .........+++.+|||++++++||||||||....+.+++.+|+.+|+..+++|||+++
T Consensus 239 ~~v~~VGPl~~~~~~~~~---~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r 315 (472)
T PLN02670 239 KPIIPIGFLPPVIEDDEE---DDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLR 315 (472)
T ss_pred CCeEEEecCCcccccccc---ccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 789999999753110000 00000001256899999998889999999999999999999999999999999999998
Q ss_pred CCC--------CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHH
Q 039701 317 PGD--------QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKL 388 (476)
Q Consensus 317 ~~~--------~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~ 388 (476)
... ..+++|.++++..++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 316 ~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 395 (472)
T PLN02670 316 NEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRL 395 (472)
T ss_pred CCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHH
Confidence 521 126788888877889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 039701 389 VVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLI 468 (476)
Q Consensus 389 v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 468 (476)
+ +++|+|+.++..+ .++.++.++|+++|+++|.| +++++||+||+++++.+++ .+...+.+++|+
T Consensus 396 v-~~~g~Gv~l~~~~---------~~~~~~~e~i~~av~~vm~~-~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~~ 460 (472)
T PLN02670 396 L-HGKKLGLEVPRDE---------RDGSFTSDSVAESVRLAMVD-DAGEEIRDKAKEMRNLFGD----MDRNNRYVDELV 460 (472)
T ss_pred H-HHcCeeEEeeccc---------cCCcCcHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHhC----cchhHHHHHHHH
Confidence 9 5999999996531 01358999999999999985 5688999999999999874 566678889999
Q ss_pred HHHHHh
Q 039701 469 KDILQQ 474 (476)
Q Consensus 469 ~~i~~~ 474 (476)
+++-++
T Consensus 461 ~~l~~~ 466 (472)
T PLN02670 461 HYLREN 466 (472)
T ss_pred HHHHHh
Confidence 888764
No 15
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.9e-64 Score=502.49 Aligned_cols=434 Identities=29% Similarity=0.452 Sum_probs=329.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCES 85 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~ 85 (476)
++||+|+|+|++||++|++.||++|++| ||+|||++++.+...+++... ..+++|+.+|. ++++....
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~-----~~p~~~~~ 79 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPN-----VIPSELVR 79 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCC-----CCCCcccc
Confidence 7999999999999999999999999999 999999999988776666421 12589988873 23332211
Q ss_pred CCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhcccc
Q 039701 86 WDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKA 165 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (476)
. .+....+......+...+.+++++...++||||+|.++.|+..+|+++|||++.++++++..++.+.+......
T Consensus 80 ~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~ 154 (459)
T PLN02448 80 A-----ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQ 154 (459)
T ss_pred c-----cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhh
Confidence 1 12222222333356677777777643468999999999999999999999999999999988777666542211
Q ss_pred CC--CCCCC---Cc-ccccCCCCCcccccccccchhhh-----HHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhc
Q 039701 166 HE--SVSSD---SE-YFLVPGLPDRVEITKAQLPEILK-----LKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNA 234 (476)
Q Consensus 166 ~~--~~~~~---~~-~~~~Pg~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 234 (476)
.. +.... .. ...+||++. +...+++.++. ....+........+++++++||+++||+.+++++...
T Consensus 155 ~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~ 231 (459)
T PLN02448 155 NGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSK 231 (459)
T ss_pred ccCCCCccccccCCccccCCCCCC---CChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhh
Confidence 10 01100 01 124677764 45555655432 1222222333445678999999999999999999887
Q ss_pred cCCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEE
Q 039701 235 RDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWV 314 (476)
Q Consensus 235 ~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~ 314 (476)
++++++.|||+......... .. .......+.++.+||+.++.++||||||||....+.+++.+++++++..+++|||+
T Consensus 232 ~~~~~~~iGP~~~~~~~~~~-~~-~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~ 309 (459)
T PLN02448 232 FPFPVYPIGPSIPYMELKDN-SS-SSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWV 309 (459)
T ss_pred cCCceEEecCcccccccCCC-cc-ccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 77789999999753211000 00 00001113478899999988899999999998888999999999999999999998
Q ss_pred EcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhc
Q 039701 315 IRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLR 394 (476)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g 394 (476)
++... .++.++. ++|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.+|
T Consensus 310 ~~~~~---~~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g 385 (459)
T PLN02448 310 ARGEA---SRLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWK 385 (459)
T ss_pred EcCch---hhHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhC
Confidence 86432 2454433 4688989999999999999999999999999999999999999999999999999999974589
Q ss_pred ceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 039701 395 IGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG-EERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 395 ~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~-~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~ 473 (476)
+|+.+.... ..++.+++++|+++|+++|.++ +++++||+||+++++++++++.+||||.+++++|++.|.+
T Consensus 386 ~G~~~~~~~--------~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 386 IGWRVKREV--------GEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred ceEEEeccc--------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 998885320 0012589999999999999875 7889999999999999999999999999999999999864
No 16
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=8.9e-64 Score=494.49 Aligned_cols=440 Identities=25% Similarity=0.444 Sum_probs=328.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCC--CeEEEEeCCcch-hhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHG--ALVTIVTTPMNA-ARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCE 84 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rG--H~Vt~~~~~~~~-~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~ 84 (476)
+.||+|+|+|++||++|++.||+.|+.+| ..|||++++.+. ..++...........+++|+.+|.... .+...
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~- 78 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTLG- 78 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCccc-
Confidence 67999999999999999999999999998 999999998765 333333322111112599999883211 11100
Q ss_pred CCCCCCCcCcHHHHHHHHHHc----hHHHHHHHHhc--CCCC-eEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHH
Q 039701 85 SWDKLPSMALLPKFFAAIEML----RLPLETLFKEI--QPKP-GCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCL 157 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~--~~~~-D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~ 157 (476)
. . .+....+......+ .+.+.+++++. +.+| +|||+|.+++|+..+|+++|||++.|+++++..++++
T Consensus 79 ---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~ 153 (468)
T PLN02207 79 ---G-T-QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMM 153 (468)
T ss_pred ---c-c-cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 0 0 12222333333333 44556665542 1234 8999999999999999999999999999999888877
Q ss_pred hhhhcccc-CCCC--CCCCcccccCCC-CCcccccccccchhhh----HHHhHHHHHHhhccccEEEecchhhcCHHHHH
Q 039701 158 HSLSVSKA-HESV--SSDSEYFLVPGL-PDRVEITKAQLPEILK----LKSFGEPILAAEMASYGVIVNSFEELEPAYVE 229 (476)
Q Consensus 158 ~~~~~~~~-~~~~--~~~~~~~~~Pg~-~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 229 (476)
++.+.... .... +....+..+||+ +. ++..+++.++. +..+ .+......+++++++||+.+||+++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~~~~~~~-~~~~~~~~~~~~vlvNtf~~LE~~~~~ 229 (468)
T PLN02207 154 QYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVEDGYDAY-VKLAILFTKANGILVNSSFDIEPYSVN 229 (468)
T ss_pred HHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCCccHHHH-HHHHHhcccCCEEEEEchHHHhHHHHH
Confidence 76643211 1111 111134568898 44 66777776442 2222 233345677889999999999999999
Q ss_pred HHHh-ccCCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCC
Q 039701 230 EYKN-ARDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATK 308 (476)
Q Consensus 230 ~~~~-~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~ 308 (476)
.+.. ...++++.|||+......... ......++++.+||+++++++||||||||....+.+++.+++.+++..+
T Consensus 230 ~~~~~~~~p~v~~VGPl~~~~~~~~~-----~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~ 304 (468)
T PLN02207 230 HFLDEQNYPSVYAVGPIFDLKAQPHP-----EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQ 304 (468)
T ss_pred HHHhccCCCcEEEecCCcccccCCCC-----ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCC
Confidence 8865 234789999999764321110 0000123679999999988899999999999999999999999999999
Q ss_pred CCeEEEEcCCCC-----CchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccch
Q 039701 309 KPFIWVIRPGDQ-----AFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQF 383 (476)
Q Consensus 309 ~~~i~~~~~~~~-----~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~ 383 (476)
++|||+++.... .|++|.++. ++|..+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 305 ~~flW~~r~~~~~~~~~lp~~f~er~-~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~ 383 (468)
T PLN02207 305 YRFLWSLRTEEVTNDDLLPEGFLDRV-SGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQ 383 (468)
T ss_pred CcEEEEEeCCCccccccCCHHHHhhc-CCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccch
Confidence 999999985321 257777765 56778889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHH
Q 039701 384 CNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLN 463 (476)
Q Consensus 384 ~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~ 463 (476)
.||+++++++|+|+++.... +. ..++.++.++|+++|+++|.+ ++++||+||+++++.+++++.+||||+++
T Consensus 384 ~Na~~~~~~~gvGv~~~~~~--~~----~~~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a~~A~~~GGSS~~~ 455 (468)
T PLN02207 384 LNAFLMVKELKLAVELKLDY--RV----HSDEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMIQRATKNGGSSFAA 455 (468)
T ss_pred hhHHHHHHHhCceEEEeccc--cc----ccCCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 99998865699999874220 00 001246999999999999962 36799999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 039701 464 IKLLIKDILQQ 474 (476)
Q Consensus 464 ~~~~~~~i~~~ 474 (476)
+++|++++...
T Consensus 456 l~~~v~~~~~~ 466 (468)
T PLN02207 456 IEKFIHDVIGI 466 (468)
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=6.1e-64 Score=494.14 Aligned_cols=423 Identities=26% Similarity=0.461 Sum_probs=319.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCC--CeEEE--EeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHG--ALVTI--VTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rG--H~Vt~--~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~ 83 (476)
+.||+++|+|++||++|++.||+.|+.+| +.||+ ++++.+...+.+..........+++|+.+|++.. .+...
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~ 79 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTP---YSSSS 79 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCC---CCCcc
Confidence 46999999999999999999999999998 55665 4444333322222211111112599998875421 11111
Q ss_pred CCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcC--CCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhh
Q 039701 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQ--PKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLS 161 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 161 (476)
. . .......+......+...+.++++++. .+++|||+|.++.|+..+|+++|||++.|++++++.++++++.+
T Consensus 80 ~--~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~ 154 (451)
T PLN03004 80 T--S---RHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLP 154 (451)
T ss_pred c--c---ccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHH
Confidence 1 1 112223344444455666666666531 24599999999999999999999999999999999999888764
Q ss_pred ccccCCCCC--CCCcccccCCCCCcccccccccchhhh-----HHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhc
Q 039701 162 VSKAHESVS--SDSEYFLVPGLPDRVEITKAQLPEILK-----LKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNA 234 (476)
Q Consensus 162 ~~~~~~~~~--~~~~~~~~Pg~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 234 (476)
......... ....+..+||+|. +...+++.+.+ ...++.+......+++++++||+++||+.+++.+...
T Consensus 155 ~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~ 231 (451)
T PLN03004 155 TIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEE 231 (451)
T ss_pred hccccccccccccCCeecCCCCCC---CChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhc
Confidence 321110000 1123456888876 66677776543 1233344444566788999999999999999999765
Q ss_pred cC-CceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEE
Q 039701 235 RD-GKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIW 313 (476)
Q Consensus 235 ~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~ 313 (476)
+. ++++.|||++...... . ... ..+.++.+|||.+++++||||||||....+.+++.+|+.+|+..+++|||
T Consensus 232 ~~~~~v~~vGPl~~~~~~~-~----~~~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW 304 (451)
T PLN03004 232 LCFRNIYPIGPLIVNGRIE-D----RND--NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLW 304 (451)
T ss_pred CCCCCEEEEeeeccCcccc-c----ccc--chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 43 6899999997432100 0 000 12356899999998889999999999989999999999999999999999
Q ss_pred EEcCC----------CC-CchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccc
Q 039701 314 VIRPG----------DQ-AFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQ 382 (476)
Q Consensus 314 ~~~~~----------~~-~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ 382 (476)
+++.. .. .+++|.++++..|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||
T Consensus 305 ~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ 384 (451)
T PLN03004 305 VVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQ 384 (451)
T ss_pred EEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccc
Confidence 99853 11 36788888888999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHH
Q 039701 383 FCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYL 462 (476)
Q Consensus 383 ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~ 462 (476)
+.||+++++++|+|+.++..+ .+.+++++|+++|+++|+|+ +||+||+++++..++++.+||||++
T Consensus 385 ~~na~~~~~~~g~g~~l~~~~----------~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 385 RFNRVMIVDEIKIAISMNESE----------TGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hhhHHHHHHHhCceEEecCCc----------CCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999964689999997531 12579999999999999876 8999999999999999999999875
No 18
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.2e-63 Score=493.99 Aligned_cols=419 Identities=24% Similarity=0.435 Sum_probs=321.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (476)
++||+++|+|++||++|++.||+.|+.+|++|||++++.+...+.+.... ..+++|+.+|. +++++
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~-----g~~~~----- 71 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISD-----GQDDD----- 71 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCC-----CCCCC-----
Confidence 67999999999999999999999999999999999999877666544221 12488888763 22221
Q ss_pred CCCCcCcHHHHHHHHH-HchHHHHHHHHhcC--CCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccc
Q 039701 88 KLPSMALLPKFFAAIE-MLRLPLETLFKEIQ--PKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK 164 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~--~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (476)
.+. + +..+...+. .+.+.++++++++. .+++|||+|.++.|+..+|+++|||++.|+++++..++.+++.+...
T Consensus 72 -~~~-~-~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~ 148 (448)
T PLN02562 72 -PPR-D-FFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELV 148 (448)
T ss_pred -ccc-c-HHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHh
Confidence 011 2 334455555 56778888877632 23489999999999999999999999999999988877766554211
Q ss_pred cC---CCCC--CCCcc-cccCCCCCcccccccccchhhh-------HHHhHHHHHHhhccccEEEecchhhcCHHHHHHH
Q 039701 165 AH---ESVS--SDSEY-FLVPGLPDRVEITKAQLPEILK-------LKSFGEPILAAEMASYGVIVNSFEELEPAYVEEY 231 (476)
Q Consensus 165 ~~---~~~~--~~~~~-~~~Pg~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 231 (476)
.. ...+ ...++ ..+||+|. ++..+++.++. ...++.+......+++++++||+.+||+.+++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~ 225 (448)
T PLN02562 149 RTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNH 225 (448)
T ss_pred hccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHH
Confidence 11 1111 11112 25788875 55666665431 1223333334556788999999999999988877
Q ss_pred Hh----ccCCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcc-cCCHHHHHHHHHHHHh
Q 039701 232 KN----ARDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLC-DCSTRQLIELGLGLEA 306 (476)
Q Consensus 232 ~~----~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~-~~~~~~~~~i~~a~~~ 306 (476)
.. ...++++.|||+....... .........+.++.+||+++++++||||||||+. ..+.+++.+++.+++.
T Consensus 226 ~~~~~~~~~~~v~~iGpl~~~~~~~----~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~ 301 (448)
T PLN02562 226 QASYNNGQNPQILQIGPLHNQEATT----ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEA 301 (448)
T ss_pred HhhhccccCCCEEEecCcccccccc----cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHH
Confidence 53 2347899999997643210 0000001123457799999988899999999986 5789999999999999
Q ss_pred CCCCeEEEEcCCC--CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchh
Q 039701 307 TKKPFIWVIRPGD--QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFC 384 (476)
Q Consensus 307 ~~~~~i~~~~~~~--~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~ 384 (476)
.+++|||+++... ..++++.++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 302 ~g~~fiW~~~~~~~~~l~~~~~~~~-~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 380 (448)
T PLN02562 302 SGRPFIWVLNPVWREGLPPGYVERV-SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFV 380 (448)
T ss_pred CCCCEEEEEcCCchhhCCHHHHHHh-ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHH
Confidence 9999999997532 2366777665 678999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHH
Q 039701 385 NEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNI 464 (476)
Q Consensus 385 ~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~ 464 (476)
||+++++.+|+|+.+ . .++.++|.++|+++|+|+ +||+||++++++++++ .+||||.+++
T Consensus 381 na~~~~~~~g~g~~~--~-------------~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~~-~~gGSS~~nl 440 (448)
T PLN02562 381 NCAYIVDVWKIGVRI--S-------------GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMGE-EARLRSMMNF 440 (448)
T ss_pred HHHHHHHHhCceeEe--C-------------CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhc-CCCCCHHHHH
Confidence 999996457999777 3 379999999999999876 8999999999999887 6789999999
Q ss_pred HHHHHHH
Q 039701 465 KLLIKDI 471 (476)
Q Consensus 465 ~~~~~~i 471 (476)
++|+++|
T Consensus 441 ~~~v~~~ 447 (448)
T PLN02562 441 TTLKDEL 447 (448)
T ss_pred HHHHHHh
Confidence 9999976
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.9e-63 Score=489.85 Aligned_cols=425 Identities=26% Similarity=0.452 Sum_probs=321.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHH-CCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQ-HGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW 86 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~-rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 86 (476)
++||+++|+|++||++|++.||+.|++ +|+.|||++++.+.. +...... ....+++|+.++ ++++++....
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~-~~~~~i~~~~i~-----dglp~g~~~~ 74 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNH-NNVENLSFLTFS-----DGFDDGVISN 74 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccC-CCCCCEEEEEcC-----CCCCCccccc
Confidence 679999999999999999999999996 699999999985421 1221111 111248888875 3566543211
Q ss_pred CCCCCcCcHHHHHHHHHHchHHHHHHHHhc--C-CCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhcc
Q 039701 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEI--Q-PKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVS 163 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~-~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 163 (476)
. .+....+......+.+.+.+++++. . .+++|||+|.+++|+..+|+++|||++.|++++++.++.+++....
T Consensus 75 ~----~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 75 T----DDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred c----ccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 1 1223344555556667777777653 1 3459999999999999999999999999999999998888765421
Q ss_pred ccCCCCCCCCcccccCCCCCcccccccccchhhh-------HHHhHHHHHHhhc--cccEEEecchhhcCHHHHHHHHhc
Q 039701 164 KAHESVSSDSEYFLVPGLPDRVEITKAQLPEILK-------LKSFGEPILAAEM--ASYGVIVNSFEELEPAYVEEYKNA 234 (476)
Q Consensus 164 ~~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~ 234 (476)
. .....+||+|. +..+++|.++. +..++.+..+... .++++++||+++||+.+++++..
T Consensus 151 ~--------~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~- 218 (455)
T PLN02152 151 N--------NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN- 218 (455)
T ss_pred C--------CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-
Confidence 0 12346888875 55666665442 1223333333332 24689999999999999999864
Q ss_pred cCCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEE
Q 039701 235 RDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWV 314 (476)
Q Consensus 235 ~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~ 314 (476)
.+++.|||+.................+..+.++.+|||.+++++||||||||....+.+++.+|+.+|+..+++|||+
T Consensus 219 --~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv 296 (455)
T PLN02152 219 --IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWV 296 (455)
T ss_pred --CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 369999999753210000000000001124579999999988899999999999999999999999999999999999
Q ss_pred EcCCCC--------------CchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccc
Q 039701 315 IRPGDQ--------------AFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFA 380 (476)
Q Consensus 315 ~~~~~~--------------~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 380 (476)
++.... .+++|.++. ++|.++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.
T Consensus 297 ~r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 375 (455)
T PLN02152 297 ITDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWS 375 (455)
T ss_pred EecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 975210 135666654 57778889999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCCh
Q 039701 381 DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSS 460 (476)
Q Consensus 381 DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~ 460 (476)
||+.||+++++.+|+|..+...+ ++.++.++|+++|+++|+| ++++||+||+++++++++++.+||+|
T Consensus 376 DQ~~na~~~~~~~~~G~~~~~~~----------~~~~~~e~l~~av~~vm~~--~~~~~r~~a~~~~~~~~~a~~~ggsS 443 (455)
T PLN02152 376 DQPANAKLLEEIWKTGVRVRENS----------EGLVERGEIRRCLEAVMEE--KSVELRESAEKWKRLAIEAGGEGGSS 443 (455)
T ss_pred cchHHHHHHHHHhCceEEeecCc----------CCcCcHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 99999999975567777774321 1247999999999999964 36689999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 039701 461 YLNIKLLIKDI 471 (476)
Q Consensus 461 ~~~~~~~~~~i 471 (476)
.+++++|+++|
T Consensus 444 ~~nl~~li~~i 454 (455)
T PLN02152 444 DKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHHh
Confidence 99999999976
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.8e-63 Score=495.95 Aligned_cols=441 Identities=26% Similarity=0.420 Sum_probs=322.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCC--CeEEEEeCCcchhhh---hhHhhhccc-CCCceEEEEeeCCCcccCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHG--ALVTIVTTPMNAARF---QNVIERGIQ-SGLRIQVIEFYFPCQEVGLPE 81 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rG--H~Vt~~~~~~~~~~~---~~~~~~~~~-~g~~i~~~~i~~~~~~~~~~~ 81 (476)
|.||+|+|+|++||++|++.||+.|+.|| ..|||++++.+...+ ......... ...+++|+.+|++.. +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ----PT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC----Cc
Confidence 78999999999999999999999999998 889999998775422 111111110 122599999875421 11
Q ss_pred CCCCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhc---CCCC-eEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHH
Q 039701 82 GCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEI---QPKP-GCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCL 157 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~-D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~ 157 (476)
.. .. .....+......+.+.+++++++. ..+| +|||+|.++.|+..+|+++|||++.|++++++.++++
T Consensus 78 -----~~-~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~ 150 (481)
T PLN02554 78 -----TE-DP-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQ 150 (481)
T ss_pred -----cc-ch-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHH
Confidence 00 01 111112222233444555554331 1134 8999999999999999999999999999999999988
Q ss_pred hhhhccccC-----CCCCCCCcccccCCCCCcccccccccchhhh---HHHhHHHHHHhhccccEEEecchhhcCHHHHH
Q 039701 158 HSLSVSKAH-----ESVSSDSEYFLVPGLPDRVEITKAQLPEILK---LKSFGEPILAAEMASYGVIVNSFEELEPAYVE 229 (476)
Q Consensus 158 ~~~~~~~~~-----~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 229 (476)
++.+..... .......++..+||++.. ++..+++.... +..++.+......+++++++|++.+||+.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~ 228 (481)
T PLN02554 151 LHVQMLYDEKKYDVSELEDSEVELDVPSLTRP--YPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALK 228 (481)
T ss_pred HhhhhhccccccCccccCCCCceeECCCCCCC--CCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH
Confidence 876542211 111111233568887421 45555654322 22333344445677899999999999999998
Q ss_pred HHHhc--cCCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhC
Q 039701 230 EYKNA--RDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEAT 307 (476)
Q Consensus 230 ~~~~~--~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~ 307 (476)
.+.+. ..+++++|||++........ .. ...++++.+||+.+++++||||||||+...+.+++.+++.+++..
T Consensus 229 ~l~~~~~~~~~v~~vGpl~~~~~~~~~-----~~-~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~ 302 (481)
T PLN02554 229 FFSGSSGDLPPVYPVGPVLHLENSGDD-----SK-DEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERS 302 (481)
T ss_pred HHHhcccCCCCEEEeCCCccccccccc-----cc-cccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHc
Confidence 88753 33789999999432211000 00 012467999999998888999999999888999999999999999
Q ss_pred CCCeEEEEcCCC----------------CCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCC
Q 039701 308 KKPFIWVIRPGD----------------QAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGL 371 (476)
Q Consensus 308 ~~~~i~~~~~~~----------------~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~Gv 371 (476)
+++|||+++... ..+++|.++. .+|+++.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 303 ~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GV 381 (481)
T PLN02554 303 GHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT-KDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGV 381 (481)
T ss_pred CCCeEEEEcCCcccccccccccccchhhhCChHHHHHh-ccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCC
Confidence 999999997521 0256676665 56778889999999999999999999999999999999999
Q ss_pred CEecccccccchhhHH-HHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 039701 372 PMVTWPFFADQFCNEK-LVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETA 450 (476)
Q Consensus 372 P~l~~P~~~DQ~~~a~-~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~ 450 (476)
|||++|+++||+.||+ ++ +++|+|+.++... .... ..+..+.+++++|+++|+++|+++ ++||+||+++++++
T Consensus 382 P~l~~P~~~DQ~~Na~~~v-~~~g~Gv~l~~~~-~~~~-~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~ 455 (481)
T PLN02554 382 PMAAWPLYAEQKFNAFEMV-EELGLAVEIRKYW-RGDL-LAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKC 455 (481)
T ss_pred CEEecCccccchhhHHHHH-HHhCceEEeeccc-cccc-cccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHH
Confidence 9999999999999995 46 7999999986410 0000 000123689999999999999622 39999999999999
Q ss_pred HHHHhhCCChHHHHHHHHHHHHHh
Q 039701 451 KTAIEEGGSSYLNIKLLIKDILQQ 474 (476)
Q Consensus 451 ~~~~~~gg~~~~~~~~~~~~i~~~ 474 (476)
++++.+|||+++++++|+++|..-
T Consensus 456 ~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 456 HVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHhcCCChHHHHHHHHHHHHHhh
Confidence 999999999999999999998753
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.2e-62 Score=487.38 Aligned_cols=442 Identities=29% Similarity=0.468 Sum_probs=315.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCC---eEEEEeCCcchh-hhhhHhhhcccCCCceEEEEeeCCCcccCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGA---LVTIVTTPMNAA-RFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH---~Vt~~~~~~~~~-~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~ 83 (476)
++||+|+|+|++||++|++.||+.|+.||. .||+++++.... ..+..+........+|+|+.+|++.. +...
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----p~~~ 78 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQD----PPPM 78 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCC----Cccc
Confidence 689999999999999999999999999984 567776543221 11222211111112599999886521 2111
Q ss_pred CCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhc-------CC-CCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHH
Q 039701 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEI-------QP-KPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLL 155 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------~~-~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~ 155 (476)
+... . .....+......+.+.+++.++++ +. +++|||+|.+++|+..+|+++|||++.|+++++..++
T Consensus 79 ~~~~---~-~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~ 154 (475)
T PLN02167 79 ELFV---K-ASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLG 154 (475)
T ss_pred cccc---c-chHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHH
Confidence 1000 0 111122333333334444443321 01 3599999999999999999999999999999998888
Q ss_pred HHhhhhccc-cCC-CC--CCCCcccccCCCCCcccccccccchhhh---HHHhHHHHHHhhccccEEEecchhhcCHHHH
Q 039701 156 CLHSLSVSK-AHE-SV--SSDSEYFLVPGLPDRVEITKAQLPEILK---LKSFGEPILAAEMASYGVIVNSFEELEPAYV 228 (476)
Q Consensus 156 ~~~~~~~~~-~~~-~~--~~~~~~~~~Pg~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 228 (476)
++++.+... ... .. .....+..+||++.. ++..+++..++ ....+.+..+...+++++++||+.+||+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~ 232 (475)
T PLN02167 155 MMKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAF 232 (475)
T ss_pred HHHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHH
Confidence 877654211 111 00 011133568888432 45555654321 1122223334456788999999999999999
Q ss_pred HHHHhcc--CCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHh
Q 039701 229 EEYKNAR--DGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEA 306 (476)
Q Consensus 229 ~~~~~~~--~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~ 306 (476)
+++.... -+++++|||+........ . ......++++.+||+.+++++||||||||+...+.+++.+|+.+++.
T Consensus 233 ~~l~~~~~~~p~v~~vGpl~~~~~~~~----~-~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~ 307 (475)
T PLN02167 233 DYFSRLPENYPPVYPVGPILSLKDRTS----P-NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALEL 307 (475)
T ss_pred HHHHhhcccCCeeEEeccccccccccC----C-CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHh
Confidence 9986531 168999999976421100 0 00001235799999999888999999999988899999999999999
Q ss_pred CCCCeEEEEcCCCC--------CchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccc
Q 039701 307 TKKPFIWVIRPGDQ--------AFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 307 ~~~~~i~~~~~~~~--------~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~ 378 (476)
.+++|||+++.... .+++|.++++.. .++.+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 308 ~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~r-g~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~ 386 (475)
T PLN02167 308 VGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGR-GLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPM 386 (475)
T ss_pred CCCcEEEEEecCcccccchhhhCChHHHHHhccC-eeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccc
Confidence 99999999874311 256676666433 467799999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCC
Q 039701 379 FADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGG 458 (476)
Q Consensus 379 ~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg 458 (476)
++||+.||+++++++|+|+.+.... . +.+++.+++++|+++|+++|.++ ++||+||+++++++++++.+||
T Consensus 387 ~~DQ~~na~~~~~~~g~g~~~~~~~----~--~~~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~av~~gG 457 (475)
T PLN02167 387 YAEQQLNAFTMVKELGLAVELRLDY----V--SAYGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARKAVMDGG 457 (475)
T ss_pred cccchhhHHHHHHHhCeeEEeeccc----c--cccCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999976437999999985420 0 00012579999999999999754 3899999999999999999999
Q ss_pred ChHHHHHHHHHHHHHh
Q 039701 459 SSYLNIKLLIKDILQQ 474 (476)
Q Consensus 459 ~~~~~~~~~~~~i~~~ 474 (476)
||++++++|++.|.+.
T Consensus 458 sS~~~l~~~v~~i~~~ 473 (475)
T PLN02167 458 SSFVAVKRFIDDLLGD 473 (475)
T ss_pred cHHHHHHHHHHHHHhc
Confidence 9999999999999764
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=6.2e-48 Score=388.70 Aligned_cols=383 Identities=18% Similarity=0.184 Sum_probs=267.3
Q ss_pred cEEEEE-cCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC
Q 039701 9 LHFILF-PFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 9 ~~vl~~-~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (476)
-||+.+ |.++.+|+.-+..|+++|++|||+||++++..... .... ...+++.+.++..... +........
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~------~~~~~~~i~~~~~~~~--~~~~~~~~~ 91 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH------LCGNITEIDASLSVEY--FKKLVKSSA 91 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC------CCCCEEEEEcCCChHH--HHHHHhhhh
Confidence 368755 77899999999999999999999999997652110 1010 1224565554321111 100000000
Q ss_pred CC-------CCcCcHHHH----HHHHHH--chHHHHHHHH--hcCCCCeEEEecCCCchhHHHHhHc-CCCcEEEecchH
Q 039701 88 KL-------PSMALLPKF----FAAIEM--LRLPLETLFK--EIQPKPGCLISDVCLPWTVSSACKF-NVPRIVFHGFSC 151 (476)
Q Consensus 88 ~~-------~~~~~~~~~----~~~~~~--~~~~l~~~l~--~~~~~~D~vI~D~~~~~~~~~A~~~-giP~v~~~~~~~ 151 (476)
.. ......... ....+. ....+.++++ + .++|+||+|.+..|+..+|+++ ++|.|.++++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~--~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN--NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC--CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 00 000000111 111111 1244556666 4 6899999999888999999999 999888877654
Q ss_pred HHHHHHhhhhccccCCCCC-CCCcccccCCCCC----cccccccccchhhh------H-------HHhHHH--------H
Q 039701 152 FCLLCLHSLSVSKAHESVS-SDSEYFLVPGLPD----RVEITKAQLPEILK------L-------KSFGEP--------I 205 (476)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~Pg~~~----~~~~~~~~l~~~~~------~-------~~~~~~--------~ 205 (476)
..... ..++ .+..+.++|.+.. .|++..|....... + .++.++ .
T Consensus 170 ~~~~~----------~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~ 239 (507)
T PHA03392 170 LAENF----------ETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTI 239 (507)
T ss_pred chhHH----------HhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCH
Confidence 33211 1122 4566677775443 34333332221110 1 111111 1
Q ss_pred HHhhccccEEEecchhhcCHHHHHHHHhccCCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEe
Q 039701 206 LAAEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVC 285 (476)
Q Consensus 206 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs 285 (476)
.+...+...+++|+...++ + +..+++++.+|||+..+..... ..++++.+|++.++ +++||||
T Consensus 240 ~~l~~~~~l~lvns~~~~d-----~-~rp~~p~v~~vGgi~~~~~~~~----------~l~~~l~~fl~~~~-~g~V~vS 302 (507)
T PHA03392 240 RELRNRVQLLFVNVHPVFD-----N-NRPVPPSVQYLGGLHLHKKPPQ----------PLDDYLEEFLNNST-NGVVYVS 302 (507)
T ss_pred HHHHhCCcEEEEecCcccc-----C-CCCCCCCeeeecccccCCCCCC----------CCCHHHHHHHhcCC-CcEEEEE
Confidence 1222344567888888777 3 4577899999999976421110 12678999998875 4699999
Q ss_pred cCCccc---CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhh
Q 039701 286 LGSLCD---CSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNS 362 (476)
Q Consensus 286 ~GS~~~---~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s 362 (476)
|||+.. .+.+.+..+++|+++.+++|||+++.... + ...|+|+++.+|+||.+||+|+.+++||||||+||
T Consensus 303 ~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~-~-----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s 376 (507)
T PHA03392 303 FGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE-A-----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQS 376 (507)
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC-c-----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCccc
Confidence 999864 46788899999999999999999986432 1 12489999999999999999999999999999999
Q ss_pred HHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHH
Q 039701 363 VLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRR 442 (476)
Q Consensus 363 ~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~ 442 (476)
++||+++|||||++|+++||+.||+|+ +++|+|+.+++. .+++++|+++|+++++|+ +||+|
T Consensus 377 ~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~-------------~~t~~~l~~ai~~vl~~~----~y~~~ 438 (507)
T PHA03392 377 TDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTV-------------TVSAAQLVLAIVDVIENP----KYRKN 438 (507)
T ss_pred HHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccC-------------CcCHHHHHHHHHHHhCCH----HHHHH
Confidence 999999999999999999999999999 599999999987 699999999999999987 99999
Q ss_pred HHHHHHHHHHH
Q 039701 443 AREYGETAKTA 453 (476)
Q Consensus 443 a~~l~~~~~~~ 453 (476)
|+++++.+++.
T Consensus 439 a~~ls~~~~~~ 449 (507)
T PHA03392 439 LKELRHLIRHQ 449 (507)
T ss_pred HHHHHHHHHhC
Confidence 99999999964
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=6.1e-49 Score=403.00 Aligned_cols=395 Identities=23% Similarity=0.277 Sum_probs=224.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC-C
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD-K 88 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~-~ 88 (476)
||+++|. ++||++++..|+++|++|||+||++++... ..+... ....++++.++.+.............. .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPS-SSLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHH-HT------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecc-cccccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6888874 889999999999999999999999986422 112111 112356665553322211111111000 0
Q ss_pred ----CCCcCcHHHHHHHHHH----ch---------HHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchH
Q 039701 89 ----LPSMALLPKFFAAIEM----LR---------LPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSC 151 (476)
Q Consensus 89 ----~~~~~~~~~~~~~~~~----~~---------~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~ 151 (476)
......+......... .. ..+.+.+++ .++|++|+|.+.+|+..+|+.+++|.+.+.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~ 151 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTP 151 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecccc
Confidence 0000001111111110 00 112223444 5899999999988999999999999986432211
Q ss_pred HHHHHHhhhhccccCCCCCCCCcccccCCC----CCcccccccccchhhh-HHHhHHHHH-------------------H
Q 039701 152 FCLLCLHSLSVSKAHESVSSDSEYFLVPGL----PDRVEITKAQLPEILK-LKSFGEPIL-------------------A 207 (476)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~----~~~~~~~~~~l~~~~~-~~~~~~~~~-------------------~ 207 (476)
.. .......+.+..+.++|.. +..+++..|....... ...+..+.. +
T Consensus 152 ~~---------~~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (500)
T PF00201_consen 152 MY---------DLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRE 222 (500)
T ss_dssp CS---------CCTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHH
T ss_pred cc---------hhhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHH
Confidence 10 1111111334556666754 3344444432222211 111111100 0
Q ss_pred hhccccEEEecchhhcCHHHHHHHHhccCCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecC
Q 039701 208 AEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLG 287 (476)
Q Consensus 208 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~G 287 (476)
.+.....++.|+...++ ++++ +.+++.+||++...+..++ ++++.+|++...++++||||||
T Consensus 223 ~~~~~~l~l~ns~~~ld-----~prp-~~p~v~~vGgl~~~~~~~l------------~~~~~~~~~~~~~~~vv~vsfG 284 (500)
T PF00201_consen 223 LLSNASLVLINSHPSLD-----FPRP-LLPNVVEVGGLHIKPAKPL------------PEELWNFLDSSGKKGVVYVSFG 284 (500)
T ss_dssp HHHHHHHCCSSTEEE---------HH-HHCTSTTGCGC-S----TC------------HHHHHHHTSTTTTTEEEEEE-T
T ss_pred HHHHHHHHhhhccccCc-----CCcc-hhhcccccCcccccccccc------------ccccchhhhccCCCCEEEEecC
Confidence 11112223344443333 4443 3478999999876654442 5789999998556789999999
Q ss_pred CcccCC-HHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHH
Q 039701 288 SLCDCS-TRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEA 366 (476)
Q Consensus 288 S~~~~~-~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~ea 366 (476)
|..... .+..+.+++|+++.+++|||++.+.. ++. .++|+++.+|+||.+||.|+++++||||||+||++||
T Consensus 285 s~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~--~~~-----l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea 357 (500)
T PF00201_consen 285 SIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP--PEN-----LPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEA 357 (500)
T ss_dssp SSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH--GCH-----HHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhCCCcccccccccc--ccc-----ccceEEEeccccchhhhhcccceeeeeccccchhhhh
Confidence 997644 44577899999999999999998742 222 3689999999999999999999999999999999999
Q ss_pred HHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 039701 367 VSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREY 446 (476)
Q Consensus 367 l~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l 446 (476)
+++|||||++|+++||+.||+++ +++|+|+.++.. .+|.++|.++|+++|+|+ +|++||+++
T Consensus 358 ~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~-------------~~~~~~l~~ai~~vl~~~----~y~~~a~~l 419 (500)
T PF00201_consen 358 LYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKN-------------DLTEEELRAAIREVLENP----SYKENAKRL 419 (500)
T ss_dssp HHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGG-------------C-SHHHHHHHHHHHHHSH----HHHHHHHHH
T ss_pred hhccCCccCCCCcccCCccceEE-EEEeeEEEEEec-------------CCcHHHHHHHHHHHHhhh----HHHHHHHHH
Confidence 99999999999999999999999 599999999988 699999999999999987 899999999
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHH
Q 039701 447 GETAKTAIEEGGSSYLNIKLLIKDIL 472 (476)
Q Consensus 447 ~~~~~~~~~~gg~~~~~~~~~~~~i~ 472 (476)
+..+++... ...|.++..||
T Consensus 420 s~~~~~~p~------~p~~~~~~~ie 439 (500)
T PF00201_consen 420 SSLFRDRPI------SPLERAVWWIE 439 (500)
T ss_dssp HHTTT---------------------
T ss_pred HHHHhcCCC------CHHHHHHHHHH
Confidence 999885421 34455554444
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.6e-44 Score=358.97 Aligned_cols=367 Identities=21% Similarity=0.227 Sum_probs=247.8
Q ss_pred EcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcC
Q 039701 14 FPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMA 93 (476)
Q Consensus 14 ~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (476)
+.+|++||++|++.||++|++|||+|+|++++.+.+.+++. ++.|+.++..... ..............
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~---~~~~~~~~~~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPP---PDNPPENTEEEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCcc---ccccccccCcchHH
Confidence 36899999999999999999999999999999888877776 5788877632111 00100000001111
Q ss_pred cHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccCCCCCCCC
Q 039701 94 LLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHESVSSDS 173 (476)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (476)
....+..........+.+.+++ .+||+||+|.+++++..+|+++|||+|.+++.+.... .++. ..
T Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~---------~~ 133 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEE---------MV 133 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccc---------cc
Confidence 1222222222333445555555 7999999999888999999999999998864432110 0000 00
Q ss_pred cccccCCCCCcccccccccchhhh-HHHhHHHHH-------Hh-hccccEEEecchhhcCHHHHHHHHhccCCceEEeCc
Q 039701 174 EYFLVPGLPDRVEITKAQLPEILK-LKSFGEPIL-------AA-EMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVGP 244 (476)
Q Consensus 174 ~~~~~Pg~~~~~~~~~~~l~~~~~-~~~~~~~~~-------~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGp 244 (476)
+...+.+........+....... ...+..+.. .. .......+.. .++++.+.+..++++++++||
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~-----~~~~l~~~~~~~~~~~~~~Gp 207 (392)
T TIGR01426 134 -SPAGEGSAEEGAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVY-----TPKAFQPAGETFDDSFTFVGP 207 (392)
T ss_pred -cccchhhhhhhccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEe-----CChHhCCCccccCCCeEEECC
Confidence 00000000000000000000000 111111110 00 0000011222 244455555678899999999
Q ss_pred ccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchh
Q 039701 245 VSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEK 324 (476)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~ 324 (476)
+..... +...|....+.+++||||+||+.....+.+..+++++++.+.++||..+.+.. .+.
T Consensus 208 ~~~~~~-----------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~-~~~ 269 (392)
T TIGR01426 208 CIGDRK-----------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD-PAD 269 (392)
T ss_pred CCCCcc-----------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC-hhH
Confidence 865421 12246666666789999999987666678888999999999999998876532 112
Q ss_pred HHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCC
Q 039701 325 FEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERP 404 (476)
Q Consensus 325 ~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~ 404 (476)
+.. .++|+.+.+|+||.++|+++++ +|||||+||++||+++|+|+|++|...||+.||.++ +++|+|..+...
T Consensus 270 ~~~--~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l-~~~g~g~~l~~~-- 342 (392)
T TIGR01426 270 LGE--LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI-AELGLGRHLPPE-- 342 (392)
T ss_pred hcc--CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-HHCCCEEEeccc--
Confidence 221 3789999999999999999998 999999999999999999999999999999999999 599999998776
Q ss_pred CCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 039701 405 PSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTA 453 (476)
Q Consensus 405 ~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~ 453 (476)
.+++++|.++|+++|+|+ +|+++++++++.+++.
T Consensus 343 -----------~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~~~~~~ 376 (392)
T TIGR01426 343 -----------EVTAEKLREAVLAVLSDP----RYAERLRKMRAEIREA 376 (392)
T ss_pred -----------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHc
Confidence 689999999999999987 8999999999998865
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=7.2e-44 Score=355.80 Aligned_cols=371 Identities=16% Similarity=0.103 Sum_probs=241.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (476)
+||+|+++|+.||++|++.||++|++|||+|+|++++.+...++.. +++|+.++.................
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 5899999999999999999999999999999999999777766655 5888877632111000000000000
Q ss_pred CCCcCc----HHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccc
Q 039701 89 LPSMAL----LPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK 164 (476)
Q Consensus 89 ~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (476)
...... ...+..........+.+.+++ ++||+||+|.+++++..+|+++|||++.+++++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~-------- 141 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA-------- 141 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc--------
Confidence 000011 111222222333344444455 899999999988889999999999999988765332110
Q ss_pred cCCCCCCCCcccccCCCCCcccccccccchhhh---HHHhHHHHHHhhccccEEE------ecchhh--cCHHHHHHHHh
Q 039701 165 AHESVSSDSEYFLVPGLPDRVEITKAQLPEILK---LKSFGEPILAAEMASYGVI------VNSFEE--LEPAYVEEYKN 233 (476)
Q Consensus 165 ~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~l------~~~~~~--l~~~~~~~~~~ 233 (476)
.. .+. +.. ......... +........+..++..++- ...... .-.+++...+.
T Consensus 142 --------~~-~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (401)
T cd03784 142 --------FP-PPL-GRA------NLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPP 205 (401)
T ss_pred --------CC-Ccc-chH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCC
Confidence 00 000 000 000000000 1111111111111111100 000000 00112222334
Q ss_pred ccCCceEEeC-cccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCC-HHHHHHHHHHHHhCCCCe
Q 039701 234 ARDGKVWCVG-PVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCS-TRQLIELGLGLEATKKPF 311 (476)
Q Consensus 234 ~~~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~-~~~~~~i~~a~~~~~~~~ 311 (476)
.++++..++| ++...+... ..+.++..|++.. +++||||+||+.... ...+..++++++..+.++
T Consensus 206 ~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~ 272 (401)
T cd03784 206 DWPRFDLVTGYGFRDVPYNG-----------PPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRA 272 (401)
T ss_pred CccccCcEeCCCCCCCCCCC-----------CCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeE
Confidence 5666666665 333221111 1256778888653 568999999998744 456667899999999999
Q ss_pred EEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHH
Q 039701 312 IWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQ 391 (476)
Q Consensus 312 i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e 391 (476)
||+.+...... ...++|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.||+++ +
T Consensus 273 i~~~g~~~~~~-----~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~-~ 344 (401)
T cd03784 273 ILSLGWGGLGA-----EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARV-A 344 (401)
T ss_pred EEEccCccccc-----cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHH-H
Confidence 99988654211 124789999999999999999999 999999999999999999999999999999999999 5
Q ss_pred hhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 039701 392 VLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTA 453 (476)
Q Consensus 392 ~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~ 453 (476)
++|+|..++.. .+++++|.++|++++++ +++++++++++++++.
T Consensus 345 ~~G~g~~l~~~-------------~~~~~~l~~al~~~l~~-----~~~~~~~~~~~~~~~~ 388 (401)
T cd03784 345 ELGAGPALDPR-------------ELTAERLAAALRRLLDP-----PSRRRAAALLRRIREE 388 (401)
T ss_pred HCCCCCCCCcc-------------cCCHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHhc
Confidence 99999999876 58999999999999984 6777788888877654
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-41 Score=334.18 Aligned_cols=375 Identities=18% Similarity=0.211 Sum_probs=242.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (476)
++||+++..|++||++|+++||++|.++||+|+|++++.+.+.+.++ ++.|..++....+ ... . ..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~---~~~-~-~~ 66 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSE---LAT-E-DG 66 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCCh---hhh-h-hh
Confidence 36899999999999999999999999999999999999999988888 4667666532110 010 0 00
Q ss_pred CCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 039701 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (476)
.......+......+.....++.+.+.+ ..+|+++.|.....+ .+++..++|++............... ...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 138 (406)
T COG1819 67 KFAGVKSFRRLLQQFKKLIRELLELLRE--LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL-----PLP 138 (406)
T ss_pred hhhccchhHHHhhhhhhhhHHHHHHHHh--cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc-----Ccc
Confidence 0111111111333333444555666666 799999999876444 89999999998743332221110000 000
Q ss_pred CCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccE--E-------EecchhhcCHHHHHHHH---hcc
Q 039701 168 SVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYG--V-------IVNSFEELEPAYVEEYK---NAR 235 (476)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~-------l~~~~~~l~~~~~~~~~---~~~ 235 (476)
.+... .....+..+ +......+.. ...+.. .....+.... . +..+-..+...+.+... ..+
T Consensus 139 ~~~~~-~~~~~~~~~----~~~~~~~~~~-~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (406)
T COG1819 139 PVGIA-GKLPIPLYP----LPPRLVRPLI-FARSWL-PKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRL 211 (406)
T ss_pred ccccc-ccccccccc----cChhhccccc-cchhhh-hhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCC
Confidence 00000 001111100 0000000000 000000 0000000000 0 00011111111111100 122
Q ss_pred CCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEE
Q 039701 236 DGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVI 315 (476)
Q Consensus 236 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~ 315 (476)
|....++||+.... ..++..|. ..++++||+|+||.... .+.+..+++++...+.++|+..
T Consensus 212 p~~~~~~~~~~~~~----------------~~~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~ 272 (406)
T COG1819 212 PFIGPYIGPLLGEA----------------ANELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSL 272 (406)
T ss_pred CCCcCccccccccc----------------cccCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEec
Confidence 33344445443321 34444553 23466999999999876 7888889999999999999999
Q ss_pred cCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcc
Q 039701 316 RPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRI 395 (476)
Q Consensus 316 ~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~ 395 (476)
++ .. . .....|+|+++.+|+||.++++++++ ||||||+|||+|||++|||+|++|...||+.||.|+ |++|+
T Consensus 273 ~~-~~-~---~~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv-e~~G~ 344 (406)
T COG1819 273 GG-AR-D---TLVNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV-EELGA 344 (406)
T ss_pred cc-cc-c---ccccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH-HHcCC
Confidence 77 21 1 11224899999999999999999999 999999999999999999999999999999999999 69999
Q ss_pred eEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCC
Q 039701 396 GVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGG 458 (476)
Q Consensus 396 G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg 458 (476)
|..+..+ .++++.|+++|+++|+|+ .|+++++++++.++++ +|
T Consensus 345 G~~l~~~-------------~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~~~---~g 387 (406)
T COG1819 345 GIALPFE-------------ELTEERLRAAVNEVLADD----SYRRAAERLAEEFKEE---DG 387 (406)
T ss_pred ceecCcc-------------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhhc---cc
Confidence 9999987 799999999999999987 9999999999999988 66
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.3e-40 Score=341.46 Aligned_cols=391 Identities=30% Similarity=0.434 Sum_probs=246.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEE---EEeeCCCcccCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQV---IEFYFPCQEVGLPEGCE 84 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~---~~i~~~~~~~~~~~~~~ 84 (476)
+.|++++++|++||++|+..||++|+++||+||++++.......... . ....+.. ..+++....+.++....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-S----KSKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-c----cceeeeeeecChHHhhhhhhhhccchH
Confidence 46899999999999999999999999999999999987544322211 0 0001111 11111111111222111
Q ss_pred CCCCCCCcCcHHHHHHHHHHchHHHHH----HHHhcCCCCeEEEecCCCchhHHHHhHcC-CCcEEEecchHHHHHHHhh
Q 039701 85 SWDKLPSMALLPKFFAAIEMLRLPLET----LFKEIQPKPGCLISDVCLPWTVSSACKFN-VPRIVFHGFSCFCLLCLHS 159 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~~~D~vI~D~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~ 159 (476)
... .............+...+.+ .......++|++|+|.+..+...++.... ++..++.+..+.......+
T Consensus 80 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~ 155 (496)
T KOG1192|consen 80 DDD----LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP 155 (496)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc
Confidence 110 00011111222222222222 22221234999999998777777777765 8888887777666543332
Q ss_pred hhccccCCCCCCCCcccccCCCCCc-----ccccccccchhhh-HHHh-------------HHHHHHhh----ccccEEE
Q 039701 160 LSVSKAHESVSSDSEYFLVPGLPDR-----VEITKAQLPEILK-LKSF-------------GEPILAAE----MASYGVI 216 (476)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~Pg~~~~-----~~~~~~~l~~~~~-~~~~-------------~~~~~~~~----~~~~~~l 216 (476)
.+ ..++|..... +.+..+....... +..+ ........ .....++
T Consensus 156 ~~-------------~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 222 (496)
T KOG1192|consen 156 SP-------------LSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGII 222 (496)
T ss_pred Cc-------------ccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhh
Confidence 22 1233332211 1111110000000 0010 00000000 1111223
Q ss_pred ecc-hhhcCHHHHHHH-HhccCCceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCC--ceEEEecCCcc--
Q 039701 217 VNS-FEELEPAYVEEY-KNARDGKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPG--SAVYVCLGSLC-- 290 (476)
Q Consensus 217 ~~~-~~~l~~~~~~~~-~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~vv~vs~GS~~-- 290 (476)
.++ +..+++..+... +....+++++|||+........ .....+|++..+.. +||||||||+.
T Consensus 223 ~~~~~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~~------------~~~~~~wl~~~~~~~~~vvyvSfGS~~~~ 290 (496)
T KOG1192|consen 223 VNASFIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQK------------SPLPLEWLDILDESRHSVVYISFGSMVNS 290 (496)
T ss_pred hcCeEEEEccCcccCCCCCCCCCCceEECcEEecCcccc------------ccccHHHHHHHhhccCCeEEEECCccccc
Confidence 333 445554444334 3334699999999987622211 11355777666554 79999999998
Q ss_pred -cCCHHHHHHHHHHHHhC-CCCeEEEEcCCCCC--chhHHHHhcCCCeEeeccccHHHh-hhCCCceeeecccChhhHHH
Q 039701 291 -DCSTRQLIELGLGLEAT-KKPFIWVIRPGDQA--FEKFEERIEGRGLLIRGWAPQVVI-LSHPAIGGFLTHCGWNSVLE 365 (476)
Q Consensus 291 -~~~~~~~~~i~~a~~~~-~~~~i~~~~~~~~~--~~~~~~~~~~~nv~~~~~vpq~~l-l~~~~~~~~I~HgG~~s~~e 365 (476)
.++.++...|+.+++.. +++|||++...... ++++.++ .++||...+|+||.++ |+|+++++||||||+|||+|
T Consensus 291 ~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E 369 (496)
T KOG1192|consen 291 ADLPEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLE 369 (496)
T ss_pred ccCCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHH
Confidence 68899999999999999 88899999876421 1222221 2568999999999998 59999999999999999999
Q ss_pred HHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 039701 366 AVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRARE 445 (476)
Q Consensus 366 al~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~ 445 (476)
++++|||||++|+++||+.||++++ +.|.|..+... .++.+.+..++..+++++ +|+++|++
T Consensus 370 ~~~~GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~~~~-------------~~~~~~~~~~~~~il~~~----~y~~~~~~ 431 (496)
T KOG1192|consen 370 SIYSGVPMVCVPLFGDQPLNARLLV-RHGGGGVLDKR-------------DLVSEELLEAIKEILENE----EYKEAAKR 431 (496)
T ss_pred HHhcCCceecCCccccchhHHHHHH-hCCCEEEEehh-------------hcCcHHHHHHHHHHHcCh----HHHHHHHH
Confidence 9999999999999999999999995 77777777776 466666999999999988 99999999
Q ss_pred HHHHHH
Q 039701 446 YGETAK 451 (476)
Q Consensus 446 l~~~~~ 451 (476)
+++..+
T Consensus 432 l~~~~~ 437 (496)
T KOG1192|consen 432 LSEILR 437 (496)
T ss_pred HHHHHH
Confidence 999876
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=8.5e-26 Score=219.32 Aligned_cols=324 Identities=16% Similarity=0.173 Sum_probs=204.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKL 89 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (476)
+|+|.+-++.||+.|.++||++|.++||+|+|+++....+ .+.+ +..++.|+.++.. .+.. ..
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e--~~l~-----~~~g~~~~~~~~~----~l~~----~~-- 65 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIE--KTII-----EKENIPYYSISSG----KLRR----YF-- 65 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccc--cccC-----cccCCcEEEEecc----CcCC----Cc--
Confidence 7999999999999999999999999999999999765432 1111 1224666666521 1110 00
Q ss_pred CCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC--chhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 039701 90 PSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCL--PWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (476)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (476)
....+......... .-...+++++ .+||+||+..-+ ..+..+|+.+++|++..
T Consensus 66 -~~~~~~~~~~~~~~-~~~~~~i~~~--~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~--------------------- 120 (352)
T PRK12446 66 -DLKNIKDPFLVMKG-VMDAYVRIRK--LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH--------------------- 120 (352)
T ss_pred -hHHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEecCchhhHHHHHHHHHcCCCEEEE---------------------
Confidence 01112222222221 2233345777 899999987743 45789999999999972
Q ss_pred CCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccC-CceEEeCccc
Q 039701 168 SVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARD-GKVWCVGPVS 246 (476)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~v~~vGpl~ 246 (476)
+...+||+.. ++..++ ++.++. ++++ ....++ .++.++|+.+
T Consensus 121 ------e~n~~~g~~n----------------r~~~~~------a~~v~~-~f~~--------~~~~~~~~k~~~tG~Pv 163 (352)
T PRK12446 121 ------ESDMTPGLAN----------------KIALRF------ASKIFV-TFEE--------AAKHLPKEKVIYTGSPV 163 (352)
T ss_pred ------CCCCCccHHH----------------HHHHHh------hCEEEE-Eccc--------hhhhCCCCCeEEECCcC
Confidence 2233444422 222222 222222 2211 111122 5778999665
Q ss_pred CCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCH-HHHHHHHHHHHhCCCCeEEEEcCCCCCchhH
Q 039701 247 LCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCST-RQLIELGLGLEATKKPFIWVIRPGDQAFEKF 325 (476)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~-~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~ 325 (476)
.+..... ..+...+.+.-.+++++|+|..||.+.... +.+..++..+. .+++++|.++.+. .+..
T Consensus 164 r~~~~~~-----------~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~--~~~~ 229 (352)
T PRK12446 164 REEVLKG-----------NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN--LDDS 229 (352)
T ss_pred Ccccccc-----------cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch--HHHH
Confidence 4422110 011222223333456799999999886332 22333344442 2488899888653 1111
Q ss_pred HHHhcCCCeEeeccc-c-HHHhhhCCCceeeecccChhhHHHHHHcCCCEeccccc-----ccchhhHHHHHHhhcceEE
Q 039701 326 EERIEGRGLLIRGWA-P-QVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFF-----ADQFCNEKLVVQVLRIGVT 398 (476)
Q Consensus 326 ~~~~~~~nv~~~~~v-p-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~-----~DQ~~~a~~v~e~~g~G~~ 398 (476)
... -.++.+..|+ + -.++|..+++ +|||||.+|++|++++|+|+|++|+. .||..||..+ ++.|+|..
T Consensus 230 ~~~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l-~~~g~~~~ 304 (352)
T PRK12446 230 LQN--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF-ERQGYASV 304 (352)
T ss_pred Hhh--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH-HHCCCEEE
Confidence 111 1355667887 5 4469999999 99999999999999999999999984 4899999999 59999999
Q ss_pred eccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 039701 399 IGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYG 447 (476)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~ 447 (476)
+... .++++.|.++|.++++|++ .|++++++++
T Consensus 305 l~~~-------------~~~~~~l~~~l~~ll~~~~---~~~~~~~~~~ 337 (352)
T PRK12446 305 LYEE-------------DVTVNSLIKHVEELSHNNE---KYKTALKKYN 337 (352)
T ss_pred cchh-------------cCCHHHHHHHHHHHHcCHH---HHHHHHHHcC
Confidence 9776 6999999999999998753 4555555433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=1.5e-24 Score=209.62 Aligned_cols=306 Identities=18% Similarity=0.200 Sum_probs=192.3
Q ss_pred cEEEEEcCC-CccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC
Q 039701 9 LHFILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 9 ~~vl~~~~p-~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (476)
|||++...+ +.||+..++.||++| |||+|+|++.....+.+.+. +.+..++. +..... ..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~----------~~~~~~~~------~~~~~~-~~ 61 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR----------FPVREIPG------LGPIQE-NG 61 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc----------cCEEEccC------ceEecc-CC
Confidence 478888888 999999999999999 69999999987544333222 23333321 110000 00
Q ss_pred CCCCcCcHHHHH---HHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccc
Q 039701 88 KLPSMALLPKFF---AAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK 164 (476)
Q Consensus 88 ~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (476)
.......+.... .........+.+.+++ .+||+||+|.. +.+..+|+..|+|++.+........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~---------- 128 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLRE--FRPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLH---------- 128 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHccc----------
Confidence 111111111111 1223344455666777 89999999954 4577899999999999876653320
Q ss_pred cCCCCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHh--hccccEEEecchhhcCHHHHHHHHhccCCceEEe
Q 039701 165 AHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAA--EMASYGVIVNSFEELEPAYVEEYKNARDGKVWCV 242 (476)
Q Consensus 165 ~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~v 242 (476)
+... +... .. +..+..++... ...+...+.-++. .+.....++.++
T Consensus 129 --------------~~~~----~~~~--~~---~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~ 176 (318)
T PF13528_consen 129 --------------PNFW----LPWD--QD---FGRLIERYIDRYHFPPADRRLALSFY---------PPLPPFFRVPFV 176 (318)
T ss_pred --------------ccCC----cchh--hh---HHHHHHHhhhhccCCcccceecCCcc---------cccccccccccc
Confidence 0000 0000 00 12222222211 2222222222221 011112456678
Q ss_pred CcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCC-CCeEEEEcCCCCC
Q 039701 243 GPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATK-KPFIWVIRPGDQA 321 (476)
Q Consensus 243 Gpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~-~~~i~~~~~~~~~ 321 (476)
||+..+.... .-. .+++.|+|++|..... .++++++..+ +++++. +...
T Consensus 177 ~p~~~~~~~~-------------------~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~-- 226 (318)
T PF13528_consen 177 GPIIRPEIRE-------------------LPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA-- 226 (318)
T ss_pred Cchhcccccc-------------------cCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc--
Confidence 8876543211 101 1234789999986532 6667777765 666665 4432
Q ss_pred chhHHHHhcCCCeEeeccc--cHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccc--cccchhhHHHHHHhhcceE
Q 039701 322 FEKFEERIEGRGLLIRGWA--PQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF--FADQFCNEKLVVQVLRIGV 397 (476)
Q Consensus 322 ~~~~~~~~~~~nv~~~~~v--pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~--~~DQ~~~a~~v~e~~g~G~ 397 (476)
....++|+.+..+. ...++|..+++ +|+|||.||++|++++|+|+|++|. ..+|..||+++ ++.|+|.
T Consensus 227 -----~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l-~~~G~~~ 298 (318)
T PF13528_consen 227 -----ADPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKL-EELGLGI 298 (318)
T ss_pred -----ccccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHH-HHCCCeE
Confidence 11137899999986 35579999999 9999999999999999999999999 78999999999 6999999
Q ss_pred EeccCCCCCCcccccCCcccchhHHHHHHHHH
Q 039701 398 TIGAERPPSLADEERNGVPVKKEDVKKAINML 429 (476)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~l 429 (476)
.++.. +++++.|+++|+++
T Consensus 299 ~~~~~-------------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 299 VLSQE-------------DLTPERLAEFLERL 317 (318)
T ss_pred Ecccc-------------cCCHHHHHHHHhcC
Confidence 99877 79999999999865
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.2e-23 Score=201.55 Aligned_cols=325 Identities=19% Similarity=0.221 Sum_probs=212.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCC-eEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGA-LVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH-~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (476)
+|++...++-||+.|.++|+++|.++|+ +|.++.+....+..... ..++.++.|+... +.. .
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-------~~~~~~~~I~~~~----~~~----~-- 64 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-------QYGIEFELIPSGG----LRR----K-- 64 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-------ccCceEEEEeccc----ccc----c--
Confidence 6899999999999999999999999999 57777665433321111 1246666665321 111 0
Q ss_pred CCCcCcHHHHHHHHH--HchHHHHHHHHhcCCCCeEEEecCC--CchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccc
Q 039701 89 LPSMALLPKFFAAIE--MLRLPLETLFKEIQPKPGCLISDVC--LPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK 164 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~D~vI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (476)
..+..+..-+. ......++++++ .+||+||.-.- +..+..+|..+|||.++
T Consensus 65 ----~~~~~~~~~~~~~~~~~~a~~il~~--~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i------------------- 119 (357)
T COG0707 65 ----GSLKLLKAPFKLLKGVLQARKILKK--LKPDVVIGTGGYVSGPVGIAAKLLGIPVII------------------- 119 (357)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEecCCccccHHHHHHHhCCCCEEE-------------------
Confidence 11111111121 223445667788 89999998663 35678999999999998
Q ss_pred cCCCCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccCCceEEeC-
Q 039701 165 AHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVG- 243 (476)
Q Consensus 165 ~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vG- 243 (476)
.+....||....+ ..+. ++.+. .++...+ ...-+.++..+|
T Consensus 120 --------hEqn~~~G~ank~----------------~~~~------a~~V~-~~f~~~~-------~~~~~~~~~~tG~ 161 (357)
T COG0707 120 --------HEQNAVPGLANKI----------------LSKF------AKKVA-SAFPKLE-------AGVKPENVVVTGI 161 (357)
T ss_pred --------EecCCCcchhHHH----------------hHHh------hceee-ecccccc-------ccCCCCceEEecC
Confidence 5566777764311 1111 12222 2221100 000113578888
Q ss_pred cccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHH-HHHHHHhC--CCCeEEEEcCCCC
Q 039701 244 PVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIE-LGLGLEAT--KKPFIWVIRPGDQ 320 (476)
Q Consensus 244 pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~-i~~a~~~~--~~~~i~~~~~~~~ 320 (476)
|...+-.. . +..-..+. ...++++|+|.-||.+.. .++. +.+++... ++.+++.++.+.
T Consensus 162 Pvr~~~~~-~------------~~~~~~~~-~~~~~~~ilV~GGS~Ga~---~ln~~v~~~~~~l~~~~~v~~~~G~~~- 223 (357)
T COG0707 162 PVRPEFEE-L------------PAAEVRKD-GRLDKKTILVTGGSQGAK---ALNDLVPEALAKLANRIQVIHQTGKND- 223 (357)
T ss_pred cccHHhhc-c------------chhhhhhh-ccCCCcEEEEECCcchhH---HHHHHHHHHHHHhhhCeEEEEEcCcch-
Confidence 55332111 0 01111111 111567999999998753 3333 33333333 467777777664
Q ss_pred CchhHHHHhcCCC-eEeeccccHH-HhhhCCCceeeecccChhhHHHHHHcCCCEecccc-c---ccchhhHHHHHHhhc
Q 039701 321 AFEKFEERIEGRG-LLIRGWAPQV-VILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF-F---ADQFCNEKLVVQVLR 394 (476)
Q Consensus 321 ~~~~~~~~~~~~n-v~~~~~vpq~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~-~---~DQ~~~a~~v~e~~g 394 (476)
.+.........+ +.+..|+.++ .+|.-+++ +||++|.+|+.|++++|+|+|.+|+ . .||..||..+ ++.|
T Consensus 224 -~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l-~~~g 299 (357)
T COG0707 224 -LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL-EKAG 299 (357)
T ss_pred -HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH-HhCC
Confidence 233333333344 8888999876 59999999 9999999999999999999999999 2 3899999999 6999
Q ss_pred ceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 039701 395 IGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 449 (476)
Q Consensus 395 ~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~ 449 (476)
.|..++.. .+|.+.|.+.|.+++++++..+.|++++++++..
T Consensus 300 aa~~i~~~-------------~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p 341 (357)
T COG0707 300 AALVIRQS-------------ELTPEKLAELILRLLSNPEKLKAMAENAKKLGKP 341 (357)
T ss_pred CEEEeccc-------------cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 99999887 6999999999999999887777777777777655
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=1.3e-21 Score=188.81 Aligned_cols=303 Identities=15% Similarity=0.097 Sum_probs=173.5
Q ss_pred EEEEEcCCCc-cChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceE-EEEeeCCCcccCCCCCCCCCC
Q 039701 10 HFILFPFLAQ-GHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQ-VIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 10 ~vl~~~~p~~-GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~-~~~i~~~~~~~~~~~~~~~~~ 87 (476)
||++...+.. ||+.|.++||++|.+ ||+|+|+++......++.. ++. +..+|..... ...+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~--~~~~----- 63 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLK--GEDG----- 63 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEe--ecCC-----
Confidence 5778777754 999999999999999 9999999877633333333 222 2222210000 0111
Q ss_pred CCCCcCcHHHHHH--HH-HHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccc
Q 039701 88 KLPSMALLPKFFA--AI-EMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSK 164 (476)
Q Consensus 88 ~~~~~~~~~~~~~--~~-~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (476)
..+....+.. .+ ........+++++ .+||+||+| ..+.+..+|+.+|||++.+..+....
T Consensus 64 ---~~~~~~~l~~~~~~~~~~~~~~~~~l~~--~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~----------- 126 (321)
T TIGR00661 64 ---KVNIVKTLRNKEYSPKKAIRREINIIRE--YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR----------- 126 (321)
T ss_pred ---cCcHHHHHHhhccccHHHHHHHHHHHHh--cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-----------
Confidence 0111222211 11 1223344567777 899999999 44566889999999999876532111
Q ss_pred cCCCCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHH-hhccccEEEecchhhcCHHHHHHHHhccCCceE-Ee
Q 039701 165 AHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILA-AEMASYGVIVNSFEELEPAYVEEYKNARDGKVW-CV 242 (476)
Q Consensus 165 ~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~-~v 242 (476)
.|+... . ...+...... ....+..+....+.... ...++.+. ..
T Consensus 127 -------------~~~~~~--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~p~~~~~~~ 172 (321)
T TIGR00661 127 -------------YPLKTD--------L-----IVYPTMAALRIFNERCERFIVPDYPFPY--------TICPKIIKNME 172 (321)
T ss_pred -------------CCcccc--------h-----hHHHHHHHHHHhccccceEeeecCCCCC--------CCCccccccCC
Confidence 111100 0 1111111111 11122222222221111 00000000 00
Q ss_pred CcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCC-CeEEEEcCCCCC
Q 039701 243 GPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKK-PFIWVIRPGDQA 321 (476)
Q Consensus 243 Gpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~-~~i~~~~~~~~~ 321 (476)
+|.. ..+..++... +++.|++.+|+.. ...+++++++.+. .+++- +....
T Consensus 173 ~~~~-------------------~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~~~~i~~-~~~~~- 223 (321)
T TIGR00661 173 GPLI-------------------RYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIANVKFVCY-SYEVA- 223 (321)
T ss_pred Cccc-------------------chhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCCeEEEEe-CCCCC-
Confidence 1110 1122223222 2345777777743 2345777776653 44321 22211
Q ss_pred chhHHHHhcCCCeEeecccc--HHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccc--cchhhHHHHHHhhcceE
Q 039701 322 FEKFEERIEGRGLLIRGWAP--QVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFA--DQFCNEKLVVQVLRIGV 397 (476)
Q Consensus 322 ~~~~~~~~~~~nv~~~~~vp--q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~--DQ~~~a~~v~e~~g~G~ 397 (476)
. .. .++|+.+.+|.| ..++|+.+++ +|||||.+|++|++++|+|++++|... ||..||..+ ++.|+|.
T Consensus 224 ~----~~-~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l-~~~g~~~ 295 (321)
T TIGR00661 224 K----NS-YNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL-EDLGCGI 295 (321)
T ss_pred c----cc-cCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-HHCCCEE
Confidence 1 11 267999999997 4568899999 999999999999999999999999955 899999999 5999999
Q ss_pred EeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC
Q 039701 398 TIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG 433 (476)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~ 433 (476)
.++.. .+ ++.+++.++++|+
T Consensus 296 ~l~~~-------------~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 296 ALEYK-------------EL---RLLEAILDIRNMK 315 (321)
T ss_pred EcChh-------------hH---HHHHHHHhccccc
Confidence 98776 34 6677777777776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=5.5e-19 Score=173.64 Aligned_cols=343 Identities=18% Similarity=0.138 Sum_probs=203.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (476)
+||+|+..+..||...++.||+.|.++||+|++++.+.... ....+ ..+++++.++.+ .... .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~--~~~~~-----~~g~~~~~~~~~----~~~~----~-- 64 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGME--ARLVP-----KAGIEFHFIPSG----GLRR----K-- 64 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchh--hhccc-----cCCCcEEEEecc----CcCC----C--
Confidence 47999999999999999999999999999999998764211 11111 114555555421 0100 0
Q ss_pred CCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCC--CchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccC
Q 039701 89 LPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVC--LPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAH 166 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (476)
.....+..... .......+.+++++ .+||+|++... ...+..+++..++|++......
T Consensus 65 -~~~~~l~~~~~-~~~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~---------------- 124 (357)
T PRK00726 65 -GSLANLKAPFK-LLKGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA---------------- 124 (357)
T ss_pred -ChHHHHHHHHH-HHHHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC----------------
Confidence 00011111111 12233455667777 79999999973 2345677888899998631110
Q ss_pred CCCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccCCceEEeCccc
Q 039701 167 ESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVGPVS 246 (476)
Q Consensus 167 ~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGpl~ 246 (476)
.|+. ..++..+ .++.++..+...+ .. .-+.++.++|+-+
T Consensus 125 -----------~~~~----------------~~r~~~~------~~d~ii~~~~~~~-----~~---~~~~~i~vi~n~v 163 (357)
T PRK00726 125 -----------VPGL----------------ANKLLAR------FAKKVATAFPGAF-----PE---FFKPKAVVTGNPV 163 (357)
T ss_pred -----------CccH----------------HHHHHHH------HhchheECchhhh-----hc---cCCCCEEEECCCC
Confidence 0000 1111111 1222222221111 01 2236788888554
Q ss_pred CCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHH-HHHHHHhCCC--CeEEEEcCCCCCch
Q 039701 247 LCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIE-LGLGLEATKK--PFIWVIRPGDQAFE 323 (476)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~-i~~a~~~~~~--~~i~~~~~~~~~~~ 323 (476)
...... ......-+...++..+|++..|+.. .+.+.. +.+|+.+... .+++.++.+. .+
T Consensus 164 ~~~~~~-------------~~~~~~~~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g~--~~ 225 (357)
T PRK00726 164 REEILA-------------LAAPPARLAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKGD--LE 225 (357)
T ss_pred ChHhhc-------------ccchhhhccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCCc--HH
Confidence 321110 0000011121223446776555532 233333 4477665443 4455666554 23
Q ss_pred hHHHHhc-CCCeEeecccc-HHHhhhCCCceeeecccChhhHHHHHHcCCCEecccc----cccchhhHHHHHHhhcceE
Q 039701 324 KFEERIE-GRGLLIRGWAP-QVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF----FADQFCNEKLVVQVLRIGV 397 (476)
Q Consensus 324 ~~~~~~~-~~nv~~~~~vp-q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~~a~~v~e~~g~G~ 397 (476)
.+.+... .-++.+.+|+. ..++|+.+++ +|+|+|.++++||+++|+|+|++|. ..+|..|+..+. +.|.|.
T Consensus 226 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~-~~~~g~ 302 (357)
T PRK00726 226 EVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALV-DAGAAL 302 (357)
T ss_pred HHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHH-HCCCEE
Confidence 3333222 22378889985 5589999999 9999999999999999999999997 468999999994 999999
Q ss_pred EeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 039701 398 TIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDI 471 (476)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i 471 (476)
.++.+ .++++.|.++|.++++|++..++++++++++++ .++..+.++.+.+.+
T Consensus 303 ~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 303 LIPQS-------------DLTPEKLAEKLLELLSDPERLEAMAEAARALGK--------PDAAERLADLIEELA 355 (357)
T ss_pred EEEcc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCC--------cCHHHHHHHHHHHHh
Confidence 99776 578999999999999998666666666555543 333335555555444
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=1.3e-17 Score=163.56 Aligned_cols=328 Identities=18% Similarity=0.150 Sum_probs=197.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKL 89 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (476)
||+|..-++.||+...+.|++.|.++||+|++++...... . .... ..+++++.+++.. ...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~-~~~~-----~~~~~~~~~~~~~----~~~-------- 61 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-A-RLVP-----KAGIPLHTIPVGG----LRR-------- 61 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-h-hccc-----ccCCceEEEEecC----cCC--------
Confidence 5889999999999999999999999999999998753211 1 1100 1135666555321 100
Q ss_pred CCcCcHHHHHHHH--HHchHHHHHHHHhcCCCCeEEEecCC--CchhHHHHhHcCCCcEEEecchHHHHHHHhhhhcccc
Q 039701 90 PSMALLPKFFAAI--EMLRLPLETLFKEIQPKPGCLISDVC--LPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKA 165 (476)
Q Consensus 90 ~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~D~vI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (476)
...+..+.... -.....+.+++++ .+||+|++... ...+..+|...++|++.....
T Consensus 62 --~~~~~~~~~~~~~~~~~~~~~~~i~~--~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~---------------- 121 (350)
T cd03785 62 --KGSLKKLKAPFKLLKGVLQARKILKK--FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN---------------- 121 (350)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC----------------
Confidence 01112221111 1233456677777 89999998763 345677889999999862110
Q ss_pred CCCCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccCCceEEeCcc
Q 039701 166 HESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVGPV 245 (476)
Q Consensus 166 ~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGpl 245 (476)
..|+. ..++ ....++.++..+-...+ . ..+.++..+|.-
T Consensus 122 -----------~~~~~----------------~~~~------~~~~~~~vi~~s~~~~~-----~---~~~~~~~~i~n~ 160 (350)
T cd03785 122 -----------AVPGL----------------ANRL------LARFADRVALSFPETAK-----Y---FPKDKAVVTGNP 160 (350)
T ss_pred -----------CCccH----------------HHHH------HHHhhCEEEEcchhhhh-----c---CCCCcEEEECCC
Confidence 00110 1111 11124454444322111 1 123567778754
Q ss_pred cCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCH-HHHHHHHHHHHhCCCCeEEEEcCCCCCchh
Q 039701 246 SLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCST-RQLIELGLGLEATKKPFIWVIRPGDQAFEK 324 (476)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~-~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~ 324 (476)
+....... ... .+.+...+++++|++..|+...... +.+..++..+...+..+++.++.+. .+.
T Consensus 161 v~~~~~~~------------~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~--~~~ 225 (350)
T cd03785 161 VREEILAL------------DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD--LEE 225 (350)
T ss_pred CchHHhhh------------hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc--HHH
Confidence 33211100 001 2222222344466666666542111 1122233333333445566666553 233
Q ss_pred HHHHhc--CCCeEeeccc-cHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccc----cccchhhHHHHHHhhcceE
Q 039701 325 FEERIE--GRGLLIRGWA-PQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPF----FADQFCNEKLVVQVLRIGV 397 (476)
Q Consensus 325 ~~~~~~--~~nv~~~~~v-pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~~a~~v~e~~g~G~ 397 (476)
+.+... .+|+.+.+|+ +..++|..+++ +|+++|.+|+.||+++|+|+|++|. ..+|..++..+. +.|.|.
T Consensus 226 l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~-~~g~g~ 302 (350)
T cd03785 226 VKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALV-KAGAAV 302 (350)
T ss_pred HHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHH-hCCCEE
Confidence 433332 3689999998 45679999999 9999999999999999999999986 357889999995 899998
Q ss_pred EeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 039701 398 TIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGE 448 (476)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~ 448 (476)
.++.. ..+.++|.++|+++++|++..+.+++++++..+
T Consensus 303 ~v~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 340 (350)
T cd03785 303 LIPQE-------------ELTPERLAAALLELLSDPERLKAMAEAARSLAR 340 (350)
T ss_pred EEecC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 88765 478999999999999988666666666655443
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.75 E-value=8.8e-16 Score=150.40 Aligned_cols=324 Identities=17% Similarity=0.173 Sum_probs=181.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (476)
+||+|++-+..||+.....||++|.++||+|++++.+.... ....+ ..+++++.++.. . ....
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~~-----~~g~~~~~i~~~-------~-~~~~-- 63 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLVP-----KAGIEFYFIPVG-------G-LRRK-- 63 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hcccc-----cCCCceEEEecc-------C-cCCC--
Confidence 37999999999999988899999999999999998643211 01100 124555555421 0 0000
Q ss_pred CCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC--chhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccC
Q 039701 89 LPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCL--PWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAH 166 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (476)
.....+...... ......+.+++++ .+||+|++.... ..+..+++.+++|.+.....
T Consensus 64 -~~~~~l~~~~~~-~~~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~----------------- 122 (348)
T TIGR01133 64 -GSFRLIKTPLKL-LKAVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN----------------- 122 (348)
T ss_pred -ChHHHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC-----------------
Confidence 010111111111 2233456677887 899999987633 34556788889999742110
Q ss_pred CCCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccCCceEEeCccc
Q 039701 167 ESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVGPVS 246 (476)
Q Consensus 167 ~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGpl~ 246 (476)
..++. ..++. .+.++.++..+-.. ...+ ...++|.-+
T Consensus 123 ----------~~~~~----------------~~~~~------~~~~d~ii~~~~~~---------~~~~--~~~~i~n~v 159 (348)
T TIGR01133 123 ----------AVPGL----------------TNKLL------SRFAKKVLISFPGA---------KDHF--EAVLVGNPV 159 (348)
T ss_pred ----------CCccH----------------HHHHH------HHHhCeeEECchhH---------hhcC--CceEEcCCc
Confidence 00000 11111 12234444333211 0111 224556322
Q ss_pred CCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHH-HHHHHHh---CCCCeEEEEcCCCCCc
Q 039701 247 LCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIE-LGLGLEA---TKKPFIWVIRPGDQAF 322 (476)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~-i~~a~~~---~~~~~i~~~~~~~~~~ 322 (476)
....... +. -.+.+.-.+++++|.+..|+.. .+.+.. +.++++. .+.++++..+... .
T Consensus 160 ~~~~~~~------------~~-~~~~~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~--~ 221 (348)
T TIGR01133 160 RQEIRSL------------PV-PRERFGLREGKPTILVLGGSQG---AKILNELVPKALAKLAEKGIQIVHQTGKND--L 221 (348)
T ss_pred CHHHhcc------------cc-hhhhcCCCCCCeEEEEECCchh---HHHHHHHHHHHHHHHhhcCcEEEEECCcch--H
Confidence 2110000 00 0112222223345544445543 223222 3345443 3456665554433 2
Q ss_pred hhHHHHhcCCCe-Eeeccc--cHHHhhhCCCceeeecccChhhHHHHHHcCCCEeccccc---ccchhhHHHHHHhhcce
Q 039701 323 EKFEERIEGRGL-LIRGWA--PQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFF---ADQFCNEKLVVQVLRIG 396 (476)
Q Consensus 323 ~~~~~~~~~~nv-~~~~~v--pq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~---~DQ~~~a~~v~e~~g~G 396 (476)
+.+.+.....++ .+..+. +..++|+.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+ ++.+.|
T Consensus 222 ~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i-~~~~~G 298 (348)
T TIGR01133 222 EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL-EDLGAG 298 (348)
T ss_pred HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-HHCCCE
Confidence 333332222221 222333 55679999999 99999988999999999999999873 4677888899 589999
Q ss_pred EEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 039701 397 VTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYG 447 (476)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~ 447 (476)
..++.. ..++++|.++|.++++|++..+.+.++++++.
T Consensus 299 ~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 299 LVIRQK-------------ELLPEKLLEALLKLLLDPANLEAMAEAARKLA 336 (348)
T ss_pred EEEecc-------------cCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC
Confidence 887665 46899999999999998865555666555443
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.73 E-value=4.2e-16 Score=153.69 Aligned_cols=347 Identities=15% Similarity=0.057 Sum_probs=200.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCC--ceEEEEeeCCCcccCCCCCCCCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGL--RIQVIEFYFPCQEVGLPEGCESW 86 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~--~i~~~~i~~~~~~~~~~~~~~~~ 86 (476)
+||+|.+-++.||+.|. +|+++|.++|++|.|+..... .+++. |. .+.+..++.. ++.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~-------g~~~~~~~~~l~v~----G~~------ 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAE-------GCEVLYSMEELSVM----GLR------ 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhC-------cCccccChHHhhhc----cHH------
Confidence 58999999999999999 999999999999999875421 33333 11 1222222110 000
Q ss_pred CCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEe-cCCCch--hHHHHhHcCCCcEEEecchHHHHHHHhhhhcc
Q 039701 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLIS-DVCLPW--TVSSACKFNVPRIVFHGFSCFCLLCLHSLSVS 163 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~-D~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 163 (476)
..+..+... ........+++++ .+||+||. |...+. ....|+.+|||++.+.+.. .++
T Consensus 66 ------~~l~~~~~~-~~~~~~~~~~l~~--~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~--~wa-------- 126 (385)
T TIGR00215 66 ------EVLGRLGRL-LKIRKEVVQLAKQ--AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQ--VWA-------- 126 (385)
T ss_pred ------HHHHHHHHH-HHHHHHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCc--Hhh--------
Confidence 112222221 2233466777777 89999885 543333 2348899999999753111 110
Q ss_pred ccCCCCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccCCceEEeC
Q 039701 164 KAHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVG 243 (476)
Q Consensus 164 ~~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vG 243 (476)
+... -.+.+.+. ++.++..+ +.+...+ . ..+.+..++|
T Consensus 127 -----------------------w~~~-------~~r~l~~~------~d~v~~~~--~~e~~~~---~-~~g~~~~~vG 164 (385)
T TIGR00215 127 -----------------------WRKW-------RAKKIEKA------TDFLLAIL--PFEKAFY---Q-KKNVPCRFVG 164 (385)
T ss_pred -----------------------cCcc-------hHHHHHHH------HhHhhccC--CCcHHHH---H-hcCCCEEEEC
Confidence 0000 01111111 22222111 1222222 2 1224667799
Q ss_pred -cccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcC
Q 039701 244 -PVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIRP 317 (476)
Q Consensus 244 -pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~~ 317 (476)
|+......... ...+..+-+.-.+++++|.+--||....-......++++++.. +.++++....
T Consensus 165 nPv~~~~~~~~~----------~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~ 234 (385)
T TIGR00215 165 HPLLDAIPLYKP----------DRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVN 234 (385)
T ss_pred CchhhhccccCC----------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 44322110000 0112222223233456788877886542123444566555532 3445554433
Q ss_pred CCCCchhHHHHhc----CCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecc----cccc---------
Q 039701 318 GDQAFEKFEERIE----GRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTW----PFFA--------- 380 (476)
Q Consensus 318 ~~~~~~~~~~~~~----~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~----P~~~--------- 380 (476)
... .+.+.+... ...+.+..+ ....+|..+++ +|+-+|..|+ |++++|+|+|++ |+..
T Consensus 235 ~~~-~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~ 309 (385)
T TIGR00215 235 FKR-RLQFEQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKT 309 (385)
T ss_pred chh-HHHHHHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcC
Confidence 221 112222111 123333322 33469999999 9999999888 999999999999 8732
Q ss_pred cchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC----hhhHHHHHHHHHHHHHHHHHHhh
Q 039701 381 DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG----EERDERRRRAREYGETAKTAIEE 456 (476)
Q Consensus 381 DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~----~~~~~~r~~a~~l~~~~~~~~~~ 456 (476)
+|..|+..++ ..++...+... ..|++.|.+.+.++++|+ ++.+.+++..+++.+++ .+
T Consensus 310 ~~~~~~nil~-~~~~~pel~q~-------------~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l----~~ 371 (385)
T TIGR00215 310 DYISLPNILA-NRLLVPELLQE-------------ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI----YC 371 (385)
T ss_pred CeeeccHHhc-CCccchhhcCC-------------CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh----cC
Confidence 2777999995 88998887665 699999999999999998 88888888888777765 34
Q ss_pred CCChHHHHHHHHH
Q 039701 457 GGSSYLNIKLLIK 469 (476)
Q Consensus 457 gg~~~~~~~~~~~ 469 (476)
+|.+.+..+.+++
T Consensus 372 ~~~~~~~a~~i~~ 384 (385)
T TIGR00215 372 NADSERAAQAVLE 384 (385)
T ss_pred CCHHHHHHHHHhh
Confidence 6777777766554
No 36
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.71 E-value=8.1e-16 Score=144.70 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=80.2
Q ss_pred ceEEEecCCcccCCHHHHHHHHHHHHhC--CCCeEEEEcCCCCCchhHHHHh-cCCCeEeeccccHH-HhhhCCCceeee
Q 039701 280 SAVYVCLGSLCDCSTRQLIELGLGLEAT--KKPFIWVIRPGDQAFEKFEERI-EGRGLLIRGWAPQV-VILSHPAIGGFL 355 (476)
Q Consensus 280 ~vv~vs~GS~~~~~~~~~~~i~~a~~~~--~~~~i~~~~~~~~~~~~~~~~~-~~~nv~~~~~vpq~-~ll~~~~~~~~I 355 (476)
+.|+|++|..... .....+++++.+. +.++.++++......+.+.+.. ...|+.+..++++. ++|..+++ +|
T Consensus 171 ~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~I 246 (279)
T TIGR03590 171 RRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADL--AI 246 (279)
T ss_pred CeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EE
Confidence 4689999965432 2445577777653 4677788877653333343322 24689999999987 69999999 99
Q ss_pred cccChhhHHHHHHcCCCEecccccccchhhHHH
Q 039701 356 THCGWNSVLEAVSNGLPMVTWPFFADQFCNEKL 388 (476)
Q Consensus 356 ~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~ 388 (476)
++|| +|+.|+++.|+|+|++|...+|..||+.
T Consensus 247 s~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 247 GAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred ECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 9999 9999999999999999999999999875
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.69 E-value=6.3e-15 Score=146.09 Aligned_cols=148 Identities=14% Similarity=0.176 Sum_probs=105.8
Q ss_pred CCceEEEecCCcccCCHHHHHHHHHHHHhC-CCCeEEEEcCCCCCchhHHHHh--cCCCeEeeccccHH-HhhhCCCcee
Q 039701 278 PGSAVYVCLGSLCDCSTRQLIELGLGLEAT-KKPFIWVIRPGDQAFEKFEERI--EGRGLLIRGWAPQV-VILSHPAIGG 353 (476)
Q Consensus 278 ~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~-~ll~~~~~~~ 353 (476)
++++|++..|+.... +.+..+++++.+. +.++++..+.+....+.+.+.. .++|+.+.+|+++. +++..+++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~-- 276 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSC-- 276 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccE--
Confidence 445777777776532 3455677777653 5677766654321112232222 24589999999875 69999999
Q ss_pred eecccChhhHHHHHHcCCCEecc-cccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcC
Q 039701 354 FLTHCGWNSVLEAVSNGLPMVTW-PFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDE 432 (476)
Q Consensus 354 ~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 432 (476)
+|+.+|..|+.||+++|+|+|+. |....+..|+..+ ++.|+|... . +.++|.++|.++++|
T Consensus 277 ~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~--~---------------~~~~l~~~i~~ll~~ 338 (380)
T PRK13609 277 MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI--R---------------DDEEVFAKTEALLQD 338 (380)
T ss_pred EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE--C---------------CHHHHHHHHHHHHCC
Confidence 99999988999999999999985 6777778899989 588888643 2 568999999999998
Q ss_pred ChhhHHHHHHHHHHH
Q 039701 433 GEERDERRRRAREYG 447 (476)
Q Consensus 433 ~~~~~~~r~~a~~l~ 447 (476)
++..+.+++++++++
T Consensus 339 ~~~~~~m~~~~~~~~ 353 (380)
T PRK13609 339 DMKLLQMKEAMKSLY 353 (380)
T ss_pred HHHHHHHHHHHHHhC
Confidence 866666666665543
No 38
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.65 E-value=4.2e-14 Score=140.25 Aligned_cols=165 Identities=11% Similarity=0.143 Sum_probs=115.2
Q ss_pred CCceEEEecCCcccCCHHHHHHHHHHHH-h-CCCCeEEEEcCCCCCchhHHHHh-cCCCeEeeccccHH-HhhhCCCcee
Q 039701 278 PGSAVYVCLGSLCDCSTRQLIELGLGLE-A-TKKPFIWVIRPGDQAFEKFEERI-EGRGLLIRGWAPQV-VILSHPAIGG 353 (476)
Q Consensus 278 ~~~vv~vs~GS~~~~~~~~~~~i~~a~~-~-~~~~~i~~~~~~~~~~~~~~~~~-~~~nv~~~~~vpq~-~ll~~~~~~~ 353 (476)
++++|++..|+... .+.+..+++++. . .+.++++..+.+....+.+.... ..+++.+.+|+++. .++..+++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl-- 276 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQL-- 276 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhE--
Confidence 45678888888762 244555666543 2 34566666554421112232222 24589999999765 59999999
Q ss_pred eecccChhhHHHHHHcCCCEecc-cccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcC
Q 039701 354 FLTHCGWNSVLEAVSNGLPMVTW-PFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDE 432 (476)
Q Consensus 354 ~I~HgG~~s~~eal~~GvP~l~~-P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 432 (476)
+|+..|..|+.||+++|+|+|++ |....|..|+..+ ++.|+|... -+.+++.++|.++++|
T Consensus 277 ~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~-----------------~~~~~l~~~i~~ll~~ 338 (391)
T PRK13608 277 MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA-----------------DTPEEAIKIVASLTNG 338 (391)
T ss_pred EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe-----------------CCHHHHHHHHHHHhcC
Confidence 99998888999999999999998 7777778899999 599999753 2678899999999998
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 039701 433 GEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDIL 472 (476)
Q Consensus 433 ~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~ 472 (476)
++..+++++|+++++.. .+..+.++.+++.++
T Consensus 339 ~~~~~~m~~~~~~~~~~--------~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 339 NEQLTNMISTMEQDKIK--------YATQTICRDLLDLIG 370 (391)
T ss_pred HHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHhh
Confidence 87666777777666443 233355555555544
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.62 E-value=8e-14 Score=138.27 Aligned_cols=349 Identities=15% Similarity=0.076 Sum_probs=178.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (476)
+||+|+.-++.||+.|.. ++++|.++++++.++..... .+++..- .. .+.++.++ -.
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~---~~--~~~~~~l~---------~~------ 58 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC---ES--LFDMEELA---------VM------ 58 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC---cc--ccCHHHhh---------hc------
Confidence 589999999999999999 99999998888877764321 2222200 00 12222111 00
Q ss_pred CCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCC-Cchh--HHHHhHcCCCcEEEecchHHHHHHHhhhhcccc
Q 039701 89 LPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVC-LPWT--VSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKA 165 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~-~~~~--~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (476)
.....+..+. ..-.....+++++++ .+||+|+.-.. ..+. ...|++.|||++.+.... .+.
T Consensus 59 -g~~~~~~~~~-~~~~~~~~~~~~l~~--~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~--~~~---------- 122 (380)
T PRK00025 59 -GLVEVLPRLP-RLLKIRRRLKRRLLA--EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS--VWA---------- 122 (380)
T ss_pred -cHHHHHHHHH-HHHHHHHHHHHHHHH--cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc--hhh----------
Confidence 0001111111 112234566777888 89999886332 2233 344778899988642110 000
Q ss_pred CCCCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccCCceEEeC-c
Q 039701 166 HESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVG-P 244 (476)
Q Consensus 166 ~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vG-p 244 (476)
..++. ... ..+.++.++..+- .....+ .. .+.++.++| |
T Consensus 123 -----------~~~~~----------------~~~-------~~~~~d~i~~~~~--~~~~~~---~~-~g~~~~~~G~p 162 (380)
T PRK00025 123 -----------WRQGR----------------AFK-------IAKATDHVLALFP--FEAAFY---DK-LGVPVTFVGHP 162 (380)
T ss_pred -----------cCchH----------------HHH-------HHHHHhhheeCCc--cCHHHH---Hh-cCCCeEEECcC
Confidence 00000 111 1122233333221 111221 11 223477888 4
Q ss_pred ccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCC
Q 039701 245 VSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIRPGD 319 (476)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~~~~ 319 (476)
+........ ...++.+.+.-.+++++|.+..||...........++++++.. +.++++..++..
T Consensus 163 ~~~~~~~~~-----------~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~ 231 (380)
T PRK00025 163 LADAIPLLP-----------DRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK 231 (380)
T ss_pred HHHhccccc-----------ChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh
Confidence 322111000 0122222233223345666666664432112234455555422 345666654222
Q ss_pred CCchhHHHHhcC---CCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccch-hh----------
Q 039701 320 QAFEKFEERIEG---RGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQF-CN---------- 385 (476)
Q Consensus 320 ~~~~~~~~~~~~---~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~-~~---------- 385 (476)
. .+.+.+.... -++.+.. -.-..++..+++ +|+-+|.+++ |++++|+|+|++|...--+ ..
T Consensus 232 ~-~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~ 306 (380)
T PRK00025 232 R-REQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYV 306 (380)
T ss_pred h-HHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCee
Confidence 1 2223332222 1333322 123568999999 9999999888 9999999999985432111 11
Q ss_pred --HHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHH
Q 039701 386 --EKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLN 463 (476)
Q Consensus 386 --a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~ 463 (476)
+..++ ..+++..+... ..++++|.++|.++++|++.+++++++++++...+ ..|.+.+.
T Consensus 307 ~l~~~~~-~~~~~~~~~~~-------------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~ 367 (380)
T PRK00025 307 SLPNLLA-GRELVPELLQE-------------EATPEKLARALLPLLADGARRQALLEGFTELHQQL-----RCGADERA 367 (380)
T ss_pred ehHHHhc-CCCcchhhcCC-------------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-----CCCHHHHH
Confidence 12221 33333333333 57899999999999999977777777776665553 24555555
Q ss_pred HHHHHHHH
Q 039701 464 IKLLIKDI 471 (476)
Q Consensus 464 ~~~~~~~i 471 (476)
++.+.+.+
T Consensus 368 ~~~i~~~~ 375 (380)
T PRK00025 368 AQAVLELL 375 (380)
T ss_pred HHHHHHHh
Confidence 55555443
No 40
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.56 E-value=7.4e-13 Score=121.43 Aligned_cols=333 Identities=15% Similarity=0.133 Sum_probs=188.0
Q ss_pred CcEEEEEcCC--CccChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCC
Q 039701 8 QLHFILFPFL--AQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (476)
Q Consensus 8 ~~~vl~~~~p--~~GHv~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~ 83 (476)
.+||+|.+.- +.||+..++.+|+.|++. |.+|++++...-...+.- ..+++|+.+|.-... .++.
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~--------~~gVd~V~LPsl~k~---~~G~ 77 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG--------PAGVDFVKLPSLIKG---DNGE 77 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC--------cccCceEecCceEec---CCCc
Confidence 5799999986 779999999999999998 999999988644332222 136999988722111 1111
Q ss_pred CCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhcc
Q 039701 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVS 163 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 163 (476)
....+... + +.+........+...++. .+||++|+|.+=+ +. .-+. .|.. .+..
T Consensus 78 ~~~~d~~~-~----l~e~~~~Rs~lil~t~~~--fkPDi~IVd~~P~-Gl-r~EL--~ptL--------------~yl~- 131 (400)
T COG4671 78 YGLVDLDG-D----LEETKKLRSQLILSTAET--FKPDIFIVDKFPF-GL-RFEL--LPTL--------------EYLK- 131 (400)
T ss_pred eeeeecCC-C----HHHHHHHHHHHHHHHHHh--cCCCEEEEecccc-ch-hhhh--hHHH--------------HHHh-
Confidence 11111111 1 222222233455556666 8999999998743 21 0000 0000 0000
Q ss_pred ccCCCCCCCCcccccCCCCCcccccccccchhhh--H--HHhHHHHHHhhccccEEEe---cchhhcCHHHHHHHHhccC
Q 039701 164 KAHESVSSDSEYFLVPGLPDRVEITKAQLPEILK--L--KSFGEPILAAEMASYGVIV---NSFEELEPAYVEEYKNARD 236 (476)
Q Consensus 164 ~~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~--~--~~~~~~~~~~~~~~~~~l~---~~~~~l~~~~~~~~~~~~~ 236 (476)
. ..+..+-++.+ .++.+.... | ...+..+. .+ .+.+++ +.+..+. ..|+.. ....
T Consensus 132 ---~-----~~t~~vL~lr~-----i~D~p~~~~~~w~~~~~~~~I~-r~--yD~V~v~GdP~f~d~~-~~~~~~-~~i~ 193 (400)
T COG4671 132 ---T-----TGTRLVLGLRS-----IRDIPQELEADWRRAETVRLIN-RF--YDLVLVYGDPDFYDPL-TEFPFA-PAIR 193 (400)
T ss_pred ---h-----cCCcceeehHh-----hhhchhhhccchhhhHHHHHHH-Hh--heEEEEecCccccChh-hcCCcc-Hhhh
Confidence 0 00000011111 111111111 1 11111111 11 122222 2222211 111112 2233
Q ss_pred CceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHh-CCCC--eEE
Q 039701 237 GKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEA-TKKP--FIW 313 (476)
Q Consensus 237 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~-~~~~--~i~ 313 (476)
.++.|+|-+..+ ..... ..|.. .+++.-|+||-|.-. ...+.+...++|-.- .+.+ .+.
T Consensus 194 ~k~~ytG~vq~~-~~~~~---------------~p~~~-~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~i 255 (400)
T COG4671 194 AKMRYTGFVQRS-LPHLP---------------LPPHE-APEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLI 255 (400)
T ss_pred hheeEeEEeecc-CcCCC---------------CCCcC-CCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEE
Confidence 788999977221 11000 00101 133446888888643 234555555555543 4444 444
Q ss_pred EEcCCCCCchhHHHHh-----cCCCeEeeccccHH-HhhhCCCceeeecccChhhHHHHHHcCCCEeccccc---ccchh
Q 039701 314 VIRPGDQAFEKFEERI-----EGRGLLIRGWAPQV-VILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFF---ADQFC 384 (476)
Q Consensus 314 ~~~~~~~~~~~~~~~~-----~~~nv~~~~~vpq~-~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~---~DQ~~ 384 (476)
.+++.- |+.-.+++ +-+++.+..|-.+. .++..++. +|+-||.||++|-|.+|+|.+++|.. -+|-.
T Consensus 256 vtGP~M--P~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQli 331 (400)
T COG4671 256 VTGPFM--PEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLI 331 (400)
T ss_pred EeCCCC--CHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHH
Confidence 555432 32222221 23799999998765 59988888 99999999999999999999999994 48999
Q ss_pred hHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhc
Q 039701 385 NEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMD 431 (476)
Q Consensus 385 ~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~ 431 (476)
-|+|+ +++|+.-.+-++ .+++..|+++|...+.
T Consensus 332 RA~Rl-~~LGL~dvL~pe-------------~lt~~~La~al~~~l~ 364 (400)
T COG4671 332 RAQRL-EELGLVDVLLPE-------------NLTPQNLADALKAALA 364 (400)
T ss_pred HHHHH-HhcCcceeeCcc-------------cCChHHHHHHHHhccc
Confidence 99999 599999999887 7999999999999987
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.52 E-value=5.9e-16 Score=134.68 Aligned_cols=136 Identities=18% Similarity=0.271 Sum_probs=97.7
Q ss_pred eEEEecCCcccCC-HHHHHHHHHHHHh--CCCCeEEEEcCCCCCchhHHHHhc--CCCeEeecccc-HHHhhhCCCceee
Q 039701 281 AVYVCLGSLCDCS-TRQLIELGLGLEA--TKKPFIWVIRPGDQAFEKFEERIE--GRGLLIRGWAP-QVVILSHPAIGGF 354 (476)
Q Consensus 281 vv~vs~GS~~~~~-~~~~~~i~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~~--~~nv~~~~~vp-q~~ll~~~~~~~~ 354 (476)
+|+|+.||..... .+.+..++..+.. .+.++++.++.... +....... ..++.+.+|++ ..+++..+++ +
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~--~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDl--v 76 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY--EELKIKVENFNPNVKVFGFVDNMAELMAAADL--V 76 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC--HHHCCCHCCTTCCCEEECSSSSHHHHHHHHSE--E
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH--HHHHHHHhccCCcEEEEechhhHHHHHHHcCE--E
Confidence 4889999876421 1111123333332 25788888887642 11111111 26899999999 7789999999 9
Q ss_pred ecccChhhHHHHHHcCCCEecccccc----cchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHh
Q 039701 355 LTHCGWNSVLEAVSNGLPMVTWPFFA----DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLM 430 (476)
Q Consensus 355 I~HgG~~s~~eal~~GvP~l~~P~~~----DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll 430 (476)
|||||.||++|++++|+|+|++|... +|..||..++ +.|+|..+... ..+.+.|.++|.+++
T Consensus 77 Is~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~-~~g~~~~~~~~-------------~~~~~~L~~~i~~l~ 142 (167)
T PF04101_consen 77 ISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELA-KKGAAIMLDES-------------ELNPEELAEAIEELL 142 (167)
T ss_dssp EECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHH-HCCCCCCSECC-------------C-SCCCHHHHHHCHC
T ss_pred EeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHH-HcCCccccCcc-------------cCCHHHHHHHHHHHH
Confidence 99999999999999999999999988 9999999995 99999998776 578999999999999
Q ss_pred cCCh
Q 039701 431 DEGE 434 (476)
Q Consensus 431 ~~~~ 434 (476)
+++.
T Consensus 143 ~~~~ 146 (167)
T PF04101_consen 143 SDPE 146 (167)
T ss_dssp CCHH
T ss_pred cCcH
Confidence 8763
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.49 E-value=3.4e-12 Score=126.43 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=100.5
Q ss_pred CCCceEEEecCCcccCCHHHHHHHHHHHHh---------CCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHH-Hhh
Q 039701 277 QPGSAVYVCLGSLCDCSTRQLIELGLGLEA---------TKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQV-VIL 346 (476)
Q Consensus 277 ~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~-~ll 346 (476)
+++++|.+..|+.... .+..+++++.. .+.++++..+.+....+.+.+.....++.+.+|+++. ++|
T Consensus 204 ~~~~~il~~Gg~~g~~---~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~ 280 (382)
T PLN02605 204 EDLPAVLLMGGGEGMG---PLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWM 280 (382)
T ss_pred CCCcEEEEECCCcccc---cHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHH
Confidence 4456777766665432 23333444432 3355666666543111222222123578899999865 599
Q ss_pred hCCCceeeecccChhhHHHHHHcCCCEecccccccch-hhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHH
Q 039701 347 SHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQF-CNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKA 425 (476)
Q Consensus 347 ~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~-~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~ 425 (476)
..+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+. +.|.|... . ++++|.++
T Consensus 281 ~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~--~---------------~~~~la~~ 340 (382)
T PLN02605 281 GACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS--E---------------SPKEIARI 340 (382)
T ss_pred HhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec--C---------------CHHHHHHH
Confidence 99999 999999999999999999999998776775 6888884 88988643 3 78899999
Q ss_pred HHHHhcC-ChhhHHHHHHHHHHH
Q 039701 426 INMLMDE-GEERDERRRRAREYG 447 (476)
Q Consensus 426 i~~ll~~-~~~~~~~r~~a~~l~ 447 (476)
|.++++| ++..+.+++++++.+
T Consensus 341 i~~ll~~~~~~~~~m~~~~~~~~ 363 (382)
T PLN02605 341 VAEWFGDKSDELEAMSENALKLA 363 (382)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999987 644445555555443
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.47 E-value=2.6e-11 Score=119.88 Aligned_cols=325 Identities=18% Similarity=0.104 Sum_probs=171.4
Q ss_pred CCccChHHHHHHHHHHHH--CCCeEE---EEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCC
Q 039701 17 LAQGHMIPMIDIARLLAQ--HGALVT---IVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPS 91 (476)
Q Consensus 17 p~~GHv~P~l~La~~L~~--rGH~Vt---~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (476)
-++|-=.=.++||++|.+ .|++|. ++++....+ +.. .+..+ .+.. +|.+. +..
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~~----ip~~g-~~~~---------~~sgg-----~~~ 62 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NLG----IPIIG-PTKE---------LPSGG-----FSY 62 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hCC----CceeC-CCCC---------CCCCC-----ccC
Confidence 345555566889999998 599999 998763322 110 00001 1221 22211 111
Q ss_pred cCcHHHHHHHHH---HchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccCCC
Q 039701 92 MALLPKFFAAIE---MLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHES 168 (476)
Q Consensus 92 ~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~ 168 (476)
......+..... ...-.-..++++...+||+||+-.-+. +..+|..+|+|++.+.+.---.. +.... .
T Consensus 63 ~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~------~~~~~--~ 133 (396)
T TIGR03492 63 QSLRGLLRDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYY------WESGP--R 133 (396)
T ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeecccee------ecCCC--C
Confidence 111222222222 111222334455223999999766544 88999999999998644310000 00000 0
Q ss_pred CCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccCCceEEeC-cccC
Q 039701 169 VSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVG-PVSL 247 (476)
Q Consensus 169 ~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vG-pl~~ 247 (476)
.+.....-..||... ..+ ++..-..+.++.++...- .... ++. ..+.++.++| |+..
T Consensus 134 ~~~~~~~~~~~G~~~---------------~p~-e~n~l~~~~a~~v~~~~~--~t~~---~l~-~~g~k~~~vGnPv~d 191 (396)
T TIGR03492 134 RSPSDEYHRLEGSLY---------------LPW-ERWLMRSRRCLAVFVRDR--LTAR---DLR-RQGVRASYLGNPMMD 191 (396)
T ss_pred CccchhhhccCCCcc---------------CHH-HHHHhhchhhCEEeCCCH--HHHH---HHH-HCCCeEEEeCcCHHh
Confidence 000000001122221 111 111112234555555441 1222 232 2335899999 6654
Q ss_pred CCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhC----CCCeEEEEcCCCCCch
Q 039701 248 CNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEAT----KKPFIWVIRPGDQAFE 323 (476)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~----~~~~i~~~~~~~~~~~ 323 (476)
.-... .. .-+ .+++++|.+--||....-...+..++++++.. +..+++.+.++.. .+
T Consensus 192 ~l~~~-------------~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~-~~ 252 (396)
T TIGR03492 192 GLEPP-------------ER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLS-LE 252 (396)
T ss_pred cCccc-------------cc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC-HH
Confidence 32211 00 011 22345788888887543333444566666653 5677777744332 22
Q ss_pred hHHHHhcC------------------CCeEeeccccH-HHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchh
Q 039701 324 KFEERIEG------------------RGLLIRGWAPQ-VVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFC 384 (476)
Q Consensus 324 ~~~~~~~~------------------~nv~~~~~vpq-~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~ 384 (476)
.+...... +++.+..+..+ ..++..+++ +|+-+|..| .|+...|+|+|++|.-..|.
T Consensus 253 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~- 328 (396)
T TIGR03492 253 KLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF- 328 (396)
T ss_pred HHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-
Confidence 23222211 23555455543 469999999 999999766 99999999999999877776
Q ss_pred hHHHHHHhh----cceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC
Q 039701 385 NEKLVVQVL----RIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG 433 (476)
Q Consensus 385 ~a~~v~e~~----g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~ 433 (476)
|+... ++. |.+..+.. .+.+.|.+++.++++|+
T Consensus 329 na~~~-~~~~~l~g~~~~l~~---------------~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 329 TYGFA-EAQSRLLGGSVFLAS---------------KNPEQAAQVVRQLLADP 365 (396)
T ss_pred HHHHH-HhhHhhcCCEEecCC---------------CCHHHHHHHHHHHHcCH
Confidence 88766 353 65655533 34589999999999876
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.44 E-value=2e-10 Score=112.51 Aligned_cols=139 Identities=19% Similarity=0.157 Sum_probs=93.0
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhC----CCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHH---hhhCCCcee
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEAT----KKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVV---ILSHPAIGG 353 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~---ll~~~~~~~ 353 (476)
.+++..|+... .+....++++++.. +.++++.-.+.. .+.+. ...+|+.+.+++++.+ ++..+++
T Consensus 198 ~~i~~~G~~~~--~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~--~~~~~--~~~~~v~~~g~~~~~~~~~~~~~~d~-- 269 (364)
T cd03814 198 PVLLYVGRLAP--EKNLEALLDADLPLRRRPPVRLVIVGDGPA--RARLE--ARYPNVHFLGFLDGEELAAAYASADV-- 269 (364)
T ss_pred eEEEEEecccc--ccCHHHHHHHHHHhhhcCCceEEEEeCCch--HHHHh--ccCCcEEEEeccCHHHHHHHHHhCCE--
Confidence 45566776543 22333344444433 345554443322 12222 2367999999998664 7889998
Q ss_pred eecccC----hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHH
Q 039701 354 FLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINML 429 (476)
Q Consensus 354 ~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~l 429 (476)
+|+.+. .+++.||+++|+|+|+.+... +...+ +..+.|...+. -+.+++.++|.++
T Consensus 270 ~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~~---------------~~~~~l~~~i~~l 329 (364)
T cd03814 270 FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVEP---------------GDAEAFAAALAAL 329 (364)
T ss_pred EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcCC---------------CCHHHHHHHHHHH
Confidence 887665 378999999999999877553 55566 47788876644 3678899999999
Q ss_pred hcCChhhHHHHHHHHHHH
Q 039701 430 MDEGEERDERRRRAREYG 447 (476)
Q Consensus 430 l~~~~~~~~~r~~a~~l~ 447 (476)
++|++..+++.+++++..
T Consensus 330 ~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 330 LADPELRRRMAARARAEA 347 (364)
T ss_pred HcCHHHHHHHHHHHHHHH
Confidence 999876666666666655
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.38 E-value=8.8e-10 Score=112.20 Aligned_cols=142 Identities=20% Similarity=0.186 Sum_probs=96.6
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHhC-CCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHH---HhhhCCCceeeecc
Q 039701 282 VYVCLGSLCDCSTRQLIELGLGLEAT-KKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQV---VILSHPAIGGFLTH 357 (476)
Q Consensus 282 v~vs~GS~~~~~~~~~~~i~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~---~ll~~~~~~~~I~H 357 (476)
+++..|+... .+....++++++.. +.+++++-.+.. .+.+.+.....++.+.+++++. .++..+++ +|.-
T Consensus 265 ~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~ivG~G~~--~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv--~V~p 338 (465)
T PLN02871 265 LIVYVGRLGA--EKNLDFLKRVMERLPGARLAFVGDGPY--REELEKMFAGTPTVFTGMLQGDELSQAYASGDV--FVMP 338 (465)
T ss_pred EEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEEeCChH--HHHHHHHhccCCeEEeccCCHHHHHHHHHHCCE--EEEC
Confidence 4455677643 34566678888765 455554443322 2344444456789999999854 48888898 8754
Q ss_pred cC----hhhHHHHHHcCCCEecccccccchhhHHHHHHh---hcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHh
Q 039701 358 CG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQV---LRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLM 430 (476)
Q Consensus 358 gG----~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~---~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll 430 (476)
.. .+++.||+++|+|+|+.... .....+ +. -+.|...+.. +.+++.++|.+++
T Consensus 339 S~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~~---------------d~~~la~~i~~ll 398 (465)
T PLN02871 339 SESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTPG---------------DVDDCVEKLETLL 398 (465)
T ss_pred CcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCCC---------------CHHHHHHHHHHHH
Confidence 33 34788999999999987643 334445 35 5677766544 6789999999999
Q ss_pred cCChhhHHHHHHHHHHHHH
Q 039701 431 DEGEERDERRRRAREYGET 449 (476)
Q Consensus 431 ~~~~~~~~~r~~a~~l~~~ 449 (476)
+|++..+++.+++++..++
T Consensus 399 ~~~~~~~~~~~~a~~~~~~ 417 (465)
T PLN02871 399 ADPELRERMGAAAREEVEK 417 (465)
T ss_pred hCHHHHHHHHHHHHHHHHh
Confidence 9887777788877775543
No 46
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.37 E-value=3e-13 Score=113.83 Aligned_cols=126 Identities=17% Similarity=0.240 Sum_probs=80.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCC
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLP 90 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (476)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+++. +++|.+++.+. .+... .....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~~---~~~~~---~~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGDS---RLPRS---LEPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSCG---GGGHH---HHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCCc---CcCcc---cchhh
Confidence 78999999999999999999999999999999999888888666 68999876330 00000 00000
Q ss_pred CcCcHHHHHHHHHHchHHHHHHHHhc------CCCCeEEEecCCCchhHHHHhHcCCCcEEEecchH
Q 039701 91 SMALLPKFFAAIEMLRLPLETLFKEI------QPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSC 151 (476)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~ 151 (476)
................+.+.+...+. ....|+++.+.....+..+|++++||++.....+-
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 00011111112222233333332221 14678888888888899999999999999766653
No 47
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.31 E-value=3.7e-09 Score=104.21 Aligned_cols=143 Identities=22% Similarity=0.230 Sum_probs=91.7
Q ss_pred ceEEEecCCcccCCHHHHHHHHHHHH---hC-CCCeEEEEcCCCCCchhHHH---HhcCCCeEeeccccHHH---hhhCC
Q 039701 280 SAVYVCLGSLCDCSTRQLIELGLGLE---AT-KKPFIWVIRPGDQAFEKFEE---RIEGRGLLIRGWAPQVV---ILSHP 349 (476)
Q Consensus 280 ~vv~vs~GS~~~~~~~~~~~i~~a~~---~~-~~~~i~~~~~~~~~~~~~~~---~~~~~nv~~~~~vpq~~---ll~~~ 349 (476)
+.+++..|+... .+....+++++. +. +.++++. +.+.. .+.+.+ ....+|+.+.+++++.+ ++..+
T Consensus 220 ~~~i~~~G~~~~--~k~~~~l~~~~~~l~~~~~~~l~i~-G~~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~ 295 (394)
T cd03794 220 KFVVLYAGNIGR--AQGLDTLLEAAALLKDRPDIRFLIV-GDGPE-KEELKELAKALGLDNVTFLGRVPKEELPELLAAA 295 (394)
T ss_pred cEEEEEecCccc--ccCHHHHHHHHHHHhhcCCeEEEEe-CCccc-HHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhh
Confidence 356667787654 233334444444 33 4454443 33322 222222 22457999999998654 78888
Q ss_pred CceeeecccC---------hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchh
Q 039701 350 AIGGFLTHCG---------WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKE 420 (476)
Q Consensus 350 ~~~~~I~HgG---------~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~ 420 (476)
++ +|.... -+++.||+++|+|+|+.+....+. .+ ...+.|...+. -+.+
T Consensus 296 di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~~~~---------------~~~~ 353 (394)
T cd03794 296 DV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLVVPP---------------GDPE 353 (394)
T ss_pred Ce--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceEeCC---------------CCHH
Confidence 88 664322 234799999999999988765543 33 24466666544 3789
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 039701 421 DVKKAINMLMDEGEERDERRRRAREYGE 448 (476)
Q Consensus 421 ~l~~~i~~ll~~~~~~~~~r~~a~~l~~ 448 (476)
++.++|.++++|++..+.+++++++...
T Consensus 354 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 354 ALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 9999999999988777777777776665
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.30 E-value=4.9e-09 Score=102.43 Aligned_cols=142 Identities=15% Similarity=0.106 Sum_probs=90.0
Q ss_pred ceEEEecCCcccCCHHHHHHHHHHHHhC---CCCeEEEEcCCCCCchhHHH-HhcCCCeEeeccccHHH---hhhCCCce
Q 039701 280 SAVYVCLGSLCDCSTRQLIELGLGLEAT---KKPFIWVIRPGDQAFEKFEE-RIEGRGLLIRGWAPQVV---ILSHPAIG 352 (476)
Q Consensus 280 ~vv~vs~GS~~~~~~~~~~~i~~a~~~~---~~~~i~~~~~~~~~~~~~~~-~~~~~nv~~~~~vpq~~---ll~~~~~~ 352 (476)
+.+++..|++.. .+....++++++.. +.++++.-.+... ..... .....++.+.+++++.+ ++..+++
T Consensus 191 ~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l~i~G~~~~~--~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~- 265 (359)
T cd03823 191 RLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIELVIVGNGLEL--EEESYELEGDPRVEFLGAYPQEEIDDFYAEIDV- 265 (359)
T ss_pred ceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEEEEEcCchhh--hHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCE-
Confidence 356666777654 23344455555443 4555544333221 11110 01257999999997554 6888888
Q ss_pred eeec----ccCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHH
Q 039701 353 GFLT----HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAIN 427 (476)
Q Consensus 353 ~~I~----HgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~ 427 (476)
+|+ ..|. .++.||+++|+|+|+.+. ..+...+ +.-+.|...... +.+++.++|.
T Consensus 266 -~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~~---------------d~~~l~~~i~ 324 (359)
T cd03823 266 -LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPPG---------------DAEDLAAALE 324 (359)
T ss_pred -EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECCC---------------CHHHHHHHHH
Confidence 773 2333 478999999999998654 4466666 465577766544 6899999999
Q ss_pred HHhcCChhhHHHHHHHHHHH
Q 039701 428 MLMDEGEERDERRRRAREYG 447 (476)
Q Consensus 428 ~ll~~~~~~~~~r~~a~~l~ 447 (476)
++++|++..+.+++++++..
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~ 344 (359)
T cd03823 325 RLIDDPDLLERLRAGIEPPR 344 (359)
T ss_pred HHHhChHHHHHHHHhHHHhh
Confidence 99998866666666554433
No 49
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.29 E-value=6.9e-09 Score=102.39 Aligned_cols=158 Identities=17% Similarity=0.099 Sum_probs=98.6
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHH----hCCCCeEEEEcCCCCCchhHHHHh----cCCCeEeeccccHH-HhhhCCCc
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLE----ATKKPFIWVIRPGDQAFEKFEERI----EGRGLLIRGWAPQV-VILSHPAI 351 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~----~~~~~~i~~~~~~~~~~~~~~~~~----~~~nv~~~~~vpq~-~ll~~~~~ 351 (476)
.+++.+|.... .+.+..++++++ +.+.++++.-.+.. .+.+.+.. ..+++.+.++.++. .++..+++
T Consensus 198 ~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~ 273 (371)
T cd04962 198 KVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLVGDGPE--RSPAERLARELGLQDDVLFLGKQDHVEELLSIADL 273 (371)
T ss_pred eEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEEcCCcC--HHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCE
Confidence 45566776653 334444445443 23556555543332 22222221 24678888888754 58988888
Q ss_pred eeeec----ccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHH
Q 039701 352 GGFLT----HCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAIN 427 (476)
Q Consensus 352 ~~~I~----HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~ 427 (476)
+|. -|.-.++.||+++|+|+|+... ...+..+ +.-..|...+. -+.+++.++|.
T Consensus 274 --~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~~~---------------~~~~~l~~~i~ 331 (371)
T cd04962 274 --FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLVDV---------------GDVEAMAEYAL 331 (371)
T ss_pred --EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEcCC---------------CCHHHHHHHHH
Confidence 662 2334699999999999998544 4455666 35556765544 37899999999
Q ss_pred HHhcCChhhHHHHHHHHHHH-HHHHHHHhhCCChHHHHHHHHHHHH
Q 039701 428 MLMDEGEERDERRRRAREYG-ETAKTAIEEGGSSYLNIKLLIKDIL 472 (476)
Q Consensus 428 ~ll~~~~~~~~~r~~a~~l~-~~~~~~~~~gg~~~~~~~~~~~~i~ 472 (476)
++++|++..+++++++++.. +.+. ....++++.+..+
T Consensus 332 ~l~~~~~~~~~~~~~~~~~~~~~fs--------~~~~~~~~~~~y~ 369 (371)
T cd04962 332 SLLEDDELWQEFSRAARNRAAERFD--------SERIVPQYEALYR 369 (371)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHH
Confidence 99998877777777777763 3333 2255555555544
No 50
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=1.1e-09 Score=97.85 Aligned_cols=132 Identities=14% Similarity=0.213 Sum_probs=100.4
Q ss_pred eEEEecCCcccCCHH-HHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHh-cCCCeEeecccc-HHHhhhCCCceeeecc
Q 039701 281 AVYVCLGSLCDCSTR-QLIELGLGLEATKKPFIWVIRPGDQAFEKFEERI-EGRGLLIRGWAP-QVVILSHPAIGGFLTH 357 (476)
Q Consensus 281 vv~vs~GS~~~~~~~-~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~nv~~~~~vp-q~~ll~~~~~~~~I~H 357 (476)
-|+|++|.. ++. ..-.++..+++.++.+-+++++.......+..++ +.+|+...-... ...|+..+++ .|+-
T Consensus 160 ~ilI~lGGs---Dpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~A 234 (318)
T COG3980 160 DILITLGGS---DPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISA 234 (318)
T ss_pred eEEEEccCC---ChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heec
Confidence 599999964 344 4456888888888766666665443333444433 356777766666 4459999999 9999
Q ss_pred cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC
Q 039701 358 CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG 433 (476)
Q Consensus 358 gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~ 433 (476)
||. |+.|++..|+|.+++|+.--|---|... +.+|+-..++-. +.++.....+.++.+|.
T Consensus 235 aGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~--------------l~~~~~~~~~~~i~~d~ 294 (318)
T COG3980 235 AGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYH--------------LKDLAKDYEILQIQKDY 294 (318)
T ss_pred cch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCC--------------CchHHHHHHHHHhhhCH
Confidence 986 8999999999999999999999999999 598888777543 67777788888888876
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.26 E-value=1e-08 Score=99.96 Aligned_cols=327 Identities=19% Similarity=0.136 Sum_probs=172.9
Q ss_pred EEEEcCC---C-ccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCC
Q 039701 11 FILFPFL---A-QGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW 86 (476)
Q Consensus 11 vl~~~~p---~-~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 86 (476)
|++++.. . .|+..-+..|++.|.+.||+|++++........... ... .... ..
T Consensus 2 I~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~-------------~~~--------~~~~-~~- 58 (374)
T cd03801 2 ILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEE-------------VGG--------IVVV-RP- 58 (374)
T ss_pred eeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceee-------------ecC--------ccee-cC-
Confidence 4454443 2 688999999999999999999999876332211110 000 0000 00
Q ss_pred CCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhH--HHHhHcCCCcEEEecchHHHHHHHhhhhccc
Q 039701 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTV--SSACKFNVPRIVFHGFSCFCLLCLHSLSVSK 164 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 164 (476)
.. ................+..+++. .++|+|++........ ..+...++|++...........
T Consensus 59 ---~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--------- 123 (374)
T cd03801 59 ---PP-LLRVRRLLLLLLLALRLRRLLRR--ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP--------- 123 (374)
T ss_pred ---Cc-ccccchhHHHHHHHHHHHHHhhh--cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc---------
Confidence 00 00011111112233445666666 7999999888654333 5788899999875444322100
Q ss_pred cCCCCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccC---CceEE
Q 039701 165 AHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARD---GKVWC 241 (476)
Q Consensus 165 ~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~~v~~ 241 (476)
. .. ..................++.++..+-... +.+....+ .++..
T Consensus 124 -----------------~-----~~----~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~-----~~~~~~~~~~~~~~~~ 172 (374)
T cd03801 124 -----------------G-----NE----LGLLLKLARALERRALRRADRIIAVSEATR-----EELRELGGVPPEKITV 172 (374)
T ss_pred -----------------c-----cc----hhHHHHHHHHHHHHHHHhCCEEEEecHHHH-----HHHHhcCCCCCCcEEE
Confidence 0 00 000001111112223445666666553322 23333332 25555
Q ss_pred eCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEc
Q 039701 242 VGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIR 316 (476)
Q Consensus 242 vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~ 316 (476)
+.+-+....... .......-... ..+..+++.+|+... .+.+..+++++... +.++++. +
T Consensus 173 i~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~i~-G 237 (374)
T cd03801 173 IPNGVDTERFRP-----------APRAARRRLGI-PEDEPVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLVIV-G 237 (374)
T ss_pred ecCcccccccCc-----------cchHHHhhcCC-cCCCeEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEEEE-e
Confidence 553322211000 00000011111 122345566777652 33444555555432 2343333 3
Q ss_pred CCCCCchhHHHH----hcCCCeEeeccccHH---HhhhCCCceeeec----ccChhhHHHHHHcCCCEecccccccchhh
Q 039701 317 PGDQAFEKFEER----IEGRGLLIRGWAPQV---VILSHPAIGGFLT----HCGWNSVLEAVSNGLPMVTWPFFADQFCN 385 (476)
Q Consensus 317 ~~~~~~~~~~~~----~~~~nv~~~~~vpq~---~ll~~~~~~~~I~----HgG~~s~~eal~~GvP~l~~P~~~DQ~~~ 385 (476)
.... .+.+... ..+.++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ...
T Consensus 238 ~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~ 310 (374)
T cd03801 238 DGPL-REELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGI 310 (374)
T ss_pred CcHH-HHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CCh
Confidence 2221 2222221 146799999999744 47888888 773 3456789999999999998665 456
Q ss_pred HHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHH
Q 039701 386 EKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAR 444 (476)
Q Consensus 386 a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~ 444 (476)
...+ +..+.|...+.. +.+++.++|.++++|++..+++.++++
T Consensus 311 ~~~~-~~~~~g~~~~~~---------------~~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 311 PEVV-EDGETGLLVPPG---------------DPEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred hHHh-cCCcceEEeCCC---------------CHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 6666 466777766443 689999999999998865555555555
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.25 E-value=3.7e-09 Score=105.30 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=92.8
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCchh-------HHHHh-cCCCeEeeccccHHH---
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAFEK-------FEERI-EGRGLLIRGWAPQVV--- 344 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~~~~~~~~~-------~~~~~-~~~nv~~~~~vpq~~--- 344 (476)
.+++..|+... .+....+++++... +.++++..++....... +.... ...|+.+.+|+|+.+
T Consensus 221 ~~i~~~gr~~~--~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 298 (398)
T cd03800 221 PRILAVGRLDP--RKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPA 298 (398)
T ss_pred cEEEEEccccc--ccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHH
Confidence 45667787653 23344455555432 45666555443321111 11111 246899999999765
Q ss_pred hhhCCCceeeeccc---C-hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchh
Q 039701 345 ILSHPAIGGFLTHC---G-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKE 420 (476)
Q Consensus 345 ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~ 420 (476)
++..+++ +++.. | -.++.||+++|+|+|+.... .....+ ++.+.|...+.. +.+
T Consensus 299 ~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~~~---------------~~~ 356 (398)
T cd03800 299 LYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVDPR---------------DPE 356 (398)
T ss_pred HHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeCCC---------------CHH
Confidence 5888888 77542 2 36899999999999987643 355566 476778776443 689
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHH
Q 039701 421 DVKKAINMLMDEGEERDERRRRAREYG 447 (476)
Q Consensus 421 ~l~~~i~~ll~~~~~~~~~r~~a~~l~ 447 (476)
++.++|.++++|++..+.+.+++++..
T Consensus 357 ~l~~~i~~l~~~~~~~~~~~~~a~~~~ 383 (398)
T cd03800 357 ALAAALRRLLTDPALRRRLSRAGLRRA 383 (398)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 999999999998866666777766654
No 53
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.25 E-value=1.8e-08 Score=100.61 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=71.6
Q ss_pred CCCeEeeccccHHH---hhhCCCceeeec---ccCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCC
Q 039701 331 GRGLLIRGWAPQVV---ILSHPAIGGFLT---HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 403 (476)
Q Consensus 331 ~~nv~~~~~vpq~~---ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~ 403 (476)
.++|.+.+++|+.+ +|..+++ +|. +.|. .++.||+++|+|+|+.. .......+ +.-..|...+.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEcCC--
Confidence 47899999999764 6778888 653 2332 48999999999999864 44555666 35455766544
Q ss_pred CCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 039701 404 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 449 (476)
Q Consensus 404 ~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~ 449 (476)
-+++++.++|.++++|++..+++.+++++..+.
T Consensus 351 -------------~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~ 383 (396)
T cd03818 351 -------------FDPDALAAAVIELLDDPARRARLRRAARRTALR 383 (396)
T ss_pred -------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 378999999999999887777777777766544
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.25 E-value=2.1e-08 Score=98.35 Aligned_cols=146 Identities=21% Similarity=0.207 Sum_probs=93.8
Q ss_pred eEEEecCCcccC-CHHHHHHHHHHHHh--CCCCeEEEEcCCCCCchhHHHHh----cCCCeEeeccccHHH---hhhCCC
Q 039701 281 AVYVCLGSLCDC-STRQLIELGLGLEA--TKKPFIWVIRPGDQAFEKFEERI----EGRGLLIRGWAPQVV---ILSHPA 350 (476)
Q Consensus 281 vv~vs~GS~~~~-~~~~~~~i~~a~~~--~~~~~i~~~~~~~~~~~~~~~~~----~~~nv~~~~~vpq~~---ll~~~~ 350 (476)
.+++..|+.... ..+.+..++..+.. .+.++++.-++.. .+.+.+.. ..+|+.+.+++|+.+ ++..++
T Consensus 203 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad 280 (374)
T cd03817 203 PVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE--REELEELARELGLADRVIFTGFVPREELPDYYKAAD 280 (374)
T ss_pred eEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch--HHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcC
Confidence 455666776542 23333333333333 3455555443322 12222221 257999999998764 788888
Q ss_pred ceeeeccc----ChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHH
Q 039701 351 IGGFLTHC----GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAI 426 (476)
Q Consensus 351 ~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i 426 (476)
+ +|.-+ ..+++.||+++|+|+|+.. ....+..+ +..+.|...+.. +. ++.++|
T Consensus 281 ~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i-~~~~~g~~~~~~---------------~~-~~~~~i 337 (374)
T cd03817 281 L--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLV-ADGENGFLFPPG---------------DE-ALAEAL 337 (374)
T ss_pred E--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhhe-ecCceeEEeCCC---------------CH-HHHHHH
Confidence 8 77433 3478999999999999865 34566666 466778777554 22 899999
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHH
Q 039701 427 NMLMDEGEERDERRRRAREYGETAK 451 (476)
Q Consensus 427 ~~ll~~~~~~~~~r~~a~~l~~~~~ 451 (476)
.++++|++..+++.+++++......
T Consensus 338 ~~l~~~~~~~~~~~~~~~~~~~~~~ 362 (374)
T cd03817 338 LRLLQDPELRRRLSKNAEESAEKFS 362 (374)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHH
Confidence 9999998766677777777776644
No 55
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.24 E-value=2.2e-08 Score=97.49 Aligned_cols=326 Identities=16% Similarity=0.139 Sum_probs=171.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKL 89 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (476)
||++++....|+......++++|.++||+|++++....... ... ..++++..++... .. .
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~---------~~---~ 60 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---ELE-----ALGVKVIPIPLDR---------RG---I 60 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---ccc-----cCCceEEeccccc---------cc---c
Confidence 47888877889999999999999999999999987654332 101 1245555544210 00 0
Q ss_pred CCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCc--hhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccCC
Q 039701 90 PSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLP--WTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHE 167 (476)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 167 (476)
..+..+. ....+.+.+++ .+||+|++..... .+..+++..+.|.+...........
T Consensus 61 ---~~~~~~~-----~~~~~~~~~~~--~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------ 118 (359)
T cd03808 61 ---NPFKDLK-----ALLRLYRLLRK--ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------ 118 (359)
T ss_pred ---ChHhHHH-----HHHHHHHHHHh--cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------
Confidence 1111111 11234566666 7999999876433 2344555466666654322211100
Q ss_pred CCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhcc----CCceEEeC
Q 039701 168 SVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNAR----DGKVWCVG 243 (476)
Q Consensus 168 ~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~----~~~v~~vG 243 (476)
.... . ... ......+ .....++.++..+-...+ .+.... ...+..++
T Consensus 119 ------------~~~~---~----~~~---~~~~~~~--~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~~~~~ 169 (359)
T cd03808 119 ------------TSGG---L----KRR---LYLLLER--LALRFTDKVIFQNEDDRD-----LALKLGIIKKKKTVLIPG 169 (359)
T ss_pred ------------ccch---h----HHH---HHHHHHH--HHHhhccEEEEcCHHHHH-----HHHHhcCCCcCceEEecC
Confidence 0000 0 000 1111111 122345566655532211 222211 12333333
Q ss_pred cccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccC-CHHHHHHHHHHHHh--CCCCeEEEEcCCCC
Q 039701 244 PVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDC-STRQLIELGLGLEA--TKKPFIWVIRPGDQ 320 (476)
Q Consensus 244 pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~-~~~~~~~i~~a~~~--~~~~~i~~~~~~~~ 320 (476)
..+...... ... .. ..+++.+++..|+.... ..+.+.+.+..+.+ .+.++++.-.+...
T Consensus 170 ~~~~~~~~~-------------~~~-~~----~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~ 231 (359)
T cd03808 170 SGVDLDRFS-------------PSP-EP----IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEE 231 (359)
T ss_pred CCCChhhcC-------------ccc-cc----cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcc
Confidence 221111000 000 00 12233577778876542 23333333333332 23455444433321
Q ss_pred Cchh---HHHHhcCCCeEeeccccHH-HhhhCCCceeeecccC----hhhHHHHHHcCCCEecccccccchhhHHHHHHh
Q 039701 321 AFEK---FEERIEGRGLLIRGWAPQV-VILSHPAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQV 392 (476)
Q Consensus 321 ~~~~---~~~~~~~~nv~~~~~vpq~-~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~ 392 (476)
.... ........++.+.++..+. .++..+++ +|.-+. .+++.||+++|+|+|+.+.. .+...+ +.
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i-~~ 304 (359)
T cd03808 232 NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAV-ID 304 (359)
T ss_pred hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhh-hc
Confidence 1111 1111124688888875543 58989998 775443 57899999999999986543 345566 46
Q ss_pred hcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 039701 393 LRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREY 446 (476)
Q Consensus 393 ~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l 446 (476)
.+.|...+.. +.+++.++|.+++.|++..+++.+++++.
T Consensus 305 ~~~g~~~~~~---------------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 305 GVNGFLVPPG---------------DAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred CcceEEECCC---------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 6677666443 78999999999999886666666666665
No 56
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.18 E-value=2.9e-08 Score=99.42 Aligned_cols=141 Identities=23% Similarity=0.289 Sum_probs=88.6
Q ss_pred ceEEEecCCcccCCHHHHHHHHHHHHhC-----------CCCeEEEEcCCCCCchhHHHHh---cCCCeEee-ccccHH-
Q 039701 280 SAVYVCLGSLCDCSTRQLIELGLGLEAT-----------KKPFIWVIRPGDQAFEKFEERI---EGRGLLIR-GWAPQV- 343 (476)
Q Consensus 280 ~vv~vs~GS~~~~~~~~~~~i~~a~~~~-----------~~~~i~~~~~~~~~~~~~~~~~---~~~nv~~~-~~vpq~- 343 (476)
..++++.|.... .+.+..+++|++.. +.+++ .+|.+.. .+.+.+.+ .-+|+.+. +|+|..
T Consensus 232 ~~vi~~~grl~~--~K~~~~li~A~~~l~~~~~~~~~~~~i~l~-ivG~G~~-~~~l~~~~~~~~l~~~~~~~g~~~~~~ 307 (415)
T cd03816 232 PALLVSSTSWTP--DEDFGILLDALVAYEKSAATGPKLPKLLCI-ITGKGPL-KEKYLERIKELKLKKVTIRTPWLSAED 307 (415)
T ss_pred ceEEEEeccccC--CCCHHHHHHHHHHHHHhhcccccCCCEEEE-EEecCcc-HHHHHHHHHHcCCCcEEEEcCcCCHHH
Confidence 345566676543 34455556665532 23333 3343322 23333332 22466654 588754
Q ss_pred --HhhhCCCceeeec-c----c-C-hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCC
Q 039701 344 --VILSHPAIGGFLT-H----C-G-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNG 414 (476)
Q Consensus 344 --~ll~~~~~~~~I~-H----g-G-~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~ 414 (476)
.+|..+++ +|. + | | -+++.||+++|+|+|+... ......+ ++-+.|... .
T Consensus 308 ~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv--~------------ 366 (415)
T cd03816 308 YPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVF--G------------ 366 (415)
T ss_pred HHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEE--C------------
Confidence 46888998 663 1 1 2 3479999999999998554 3455566 576677665 2
Q ss_pred cccchhHHHHHHHHHhcC---ChhhHHHHHHHHHHHH
Q 039701 415 VPVKKEDVKKAINMLMDE---GEERDERRRRAREYGE 448 (476)
Q Consensus 415 ~~~t~~~l~~~i~~ll~~---~~~~~~~r~~a~~l~~ 448 (476)
+.++|+++|.++++| ++..+.+.+++++..+
T Consensus 367 ---d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 367 ---DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESE 400 (415)
T ss_pred ---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 578999999999998 7777888888887763
No 57
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.17 E-value=1.1e-07 Score=92.92 Aligned_cols=343 Identities=18% Similarity=0.104 Sum_probs=174.0
Q ss_pred CccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHH
Q 039701 18 AQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPK 97 (476)
Q Consensus 18 ~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (476)
..|+-.-+..+++.|.+.||+|++++............. ....... .......... ...
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~-------~~~~~~~-------~~~~~~~~~~---~~~---- 71 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLK-------GRLVGVE-------RLPVLLPVVP---LLK---- 71 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcc-------ccccccc-------ccccCcchhh---ccc----
Confidence 478888999999999999999999987644332111100 0000000 0000000000 001
Q ss_pred HHHHHHHchHHHHHHHH--hcCCCCeEEEecCCCc---hhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccCCCCCCC
Q 039701 98 FFAAIEMLRLPLETLFK--EIQPKPGCLISDVCLP---WTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHESVSSD 172 (476)
Q Consensus 98 ~~~~~~~~~~~l~~~l~--~~~~~~D~vI~D~~~~---~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (476)
...........+..+++ . .++|+|++....+ .+..+++..++|++..........
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~--~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------------ 131 (377)
T cd03798 72 GPLLYLLAARALLKLLKLKR--FRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNL------------------ 131 (377)
T ss_pred cchhHHHHHHHHHHHHhccc--CCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcc------------------
Confidence 11111223344566666 5 8999999886442 345677788889887544322110
Q ss_pred CcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhc--cCCceEEeCcccCCCC
Q 039701 173 SEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNA--RDGKVWCVGPVSLCNK 250 (476)
Q Consensus 173 ~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--~~~~v~~vGpl~~~~~ 250 (476)
... .. . ... ........++.++..+-..-+ .+... ...++..++.......
T Consensus 132 --------~~~------~~---~--~~~---~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~ 184 (377)
T cd03798 132 --------LPR------KR---L--LRA---LLRRALRRADAVIAVSEALAD-----ELKALGIDPEKVTVIPNGVDTER 184 (377)
T ss_pred --------cCc------hh---h--HHH---HHHHHHhcCCeEEeCCHHHHH-----HHHHhcCCCCceEEcCCCcCccc
Confidence 000 00 0 111 112233456666655532211 22221 2355666654432211
Q ss_pred CcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHh---CCCCeEEEEcCCCCCchhHHH
Q 039701 251 EDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEA---TKKPFIWVIRPGDQAFEKFEE 327 (476)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~---~~~~~i~~~~~~~~~~~~~~~ 327 (476)
.... ..... ..+.. ..+..+++..|+... .+....++++++. .+..+.+.+.+.....+.+.+
T Consensus 185 ~~~~----------~~~~~-~~~~~-~~~~~~i~~~g~~~~--~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~ 250 (377)
T cd03798 185 FSPA----------DRAEA-RKLGL-PEDKKVILFVGRLVP--RKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEA 250 (377)
T ss_pred CCCc----------chHHH-HhccC-CCCceEEEEeccCcc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHH
Confidence 0000 00000 00111 112356667777654 2333444444443 222333333232211222222
Q ss_pred Hh----cCCCeEeeccccHH---HhhhCCCceeeec----ccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcce
Q 039701 328 RI----EGRGLLIRGWAPQV---VILSHPAIGGFLT----HCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIG 396 (476)
Q Consensus 328 ~~----~~~nv~~~~~vpq~---~ll~~~~~~~~I~----HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G 396 (476)
.. ..+|+.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+.. .....+ +..+.|
T Consensus 251 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g 323 (377)
T cd03798 251 LAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENG 323 (377)
T ss_pred HHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcce
Confidence 21 25799999999865 46778888 663 24557899999999999986543 445566 466667
Q ss_pred EEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 039701 397 VTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~ 473 (476)
...+. -+.+++.++|.+++++++. +..+++.+...+.+.-. ...+++.+.+++
T Consensus 324 ~~~~~---------------~~~~~l~~~i~~~~~~~~~-~~~~~~~~~~~~~~s~~--------~~~~~~~~~~~~ 376 (377)
T cd03798 324 LLVPP---------------GDPEALAEAILRLLADPWL-RLGRAARRRVAERFSWE--------NVAERLLELYRE 376 (377)
T ss_pred eEECC---------------CCHHHHHHHHHHHhcCcHH-HHhHHHHHHHHHHhhHH--------HHHHHHHHHHhh
Confidence 66644 4789999999999998743 22333333333333322 555666665543
No 58
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.17 E-value=8.9e-08 Score=96.08 Aligned_cols=163 Identities=18% Similarity=0.145 Sum_probs=101.8
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhC----CCCeEEEEcCCCCCchhHHHHh---cCCCeEeeccccHH---HhhhCCC
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEAT----KKPFIWVIRPGDQAFEKFEERI---EGRGLLIRGWAPQV---VILSHPA 350 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~nv~~~~~vpq~---~ll~~~~ 350 (476)
.+++..|+... .+.+..+++|++.. +.+++ .+|.+.. .+.+.+.. ..+||.+.+|+|+. .++..++
T Consensus 230 ~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~-ivG~g~~-~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aD 305 (412)
T PRK10307 230 KIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFV-ICGQGGG-KARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMAD 305 (412)
T ss_pred EEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEE-EECCChh-HHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcC
Confidence 45556787753 34555566666543 23444 3343321 22333222 23589999999865 4788888
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHH
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKK 424 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~ 424 (476)
+..+.+..+. +.+.|++++|+|+|+....+. .....+ + +.|...+.. +.++|++
T Consensus 306 i~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~~---------------d~~~la~ 365 (412)
T PRK10307 306 CHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEPE---------------SVEALVA 365 (412)
T ss_pred EeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCCC---------------CHHHHHH
Confidence 8444444332 246899999999999875431 122344 3 677776554 7899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHh
Q 039701 425 AINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 474 (476)
Q Consensus 425 ~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~ 474 (476)
+|.++++|++..+.+++++++..++ --+.....+++++.++++
T Consensus 366 ~i~~l~~~~~~~~~~~~~a~~~~~~-------~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 366 AIAALARQALLRPKLGTVAREYAER-------TLDKENVLRQFIADIRGL 408 (412)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHHHH
Confidence 9999999887777777777776543 223336677777766654
No 59
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.16 E-value=4.9e-08 Score=93.09 Aligned_cols=321 Identities=20% Similarity=0.221 Sum_probs=172.7
Q ss_pred CccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHH
Q 039701 18 AQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPK 97 (476)
Q Consensus 18 ~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (476)
...|+.-|..+.++|.++||+|.+.+-... .+.+.+.. .++.+..+... . ......
T Consensus 9 ~p~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~-----yg~~y~~iG~~------g-----------~~~~~K 64 (335)
T PF04007_consen 9 HPAHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDL-----YGIDYIVIGKH------G-----------DSLYGK 64 (335)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHH-----cCCCeEEEcCC------C-----------CCHHHH
Confidence 445999999999999999999998876432 33333331 25777776521 0 022233
Q ss_pred HHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccCCCCCCCCcccc
Q 039701 98 FFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHESVSSDSEYFL 177 (476)
Q Consensus 98 ~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (476)
+.... .....+.+++++ .+||++|+-. ++.+..+|..+|+|+|.+.=.........+..+. ..-..
T Consensus 65 l~~~~-~R~~~l~~~~~~--~~pDv~is~~-s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~Pl----------a~~i~ 130 (335)
T PF04007_consen 65 LLESI-ERQYKLLKLIKK--FKPDVAISFG-SPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLPL----------ADVII 130 (335)
T ss_pred HHHHH-HHHHHHHHHHHh--hCCCEEEecC-cHHHHHHHHHhCCCeEEEecCchhhccceeehhc----------CCeeE
Confidence 33332 233455556666 7999999643 3678889999999999975543222110000000 00011
Q ss_pred cCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEE-ecchhhcCHHHHHHHHhccCCceEEeCcccCCCCCccccc
Q 039701 178 VPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVI-VNSFEELEPAYVEEYKNARDGKVWCVGPVSLCNKEDMDKL 256 (476)
Q Consensus 178 ~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~ 256 (476)
.|.. ++ ..+..++ -.+ ..+. ++.+.|+. ++-|+.
T Consensus 131 ~P~~----------~~-----~~~~~~~---G~~-~~i~~y~G~~E~a----------------yl~~F~---------- 165 (335)
T PF04007_consen 131 TPEA----------IP-----KEFLKRF---GAK-NQIRTYNGYKELA----------------YLHPFK---------- 165 (335)
T ss_pred CCcc----------cC-----HHHHHhc---CCc-CCEEEECCeeeEE----------------eecCCC----------
Confidence 1110 10 0011111 111 1222 34433222 222211
Q ss_pred ccCCCCCCCcccccccccCCCCCceEEEecCCccc----CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCC
Q 039701 257 ERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCD----CSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGR 332 (476)
Q Consensus 257 ~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~----~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 332 (476)
++++..+-++-. +.+.|++-+-+... .....+..+++.+++.+..+|...+...+ .+.+ + .-
T Consensus 166 --------Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~-~~~~-~---~~ 231 (335)
T PF04007_consen 166 --------PDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ-RELF-E---KY 231 (335)
T ss_pred --------CChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch-hhHH-h---cc
Confidence 133444444422 34567777766433 12344667888998887775555444332 1111 1 11
Q ss_pred CeEe-eccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccc
Q 039701 333 GLLI-RGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEE 411 (476)
Q Consensus 333 nv~~-~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~ 411 (476)
++.+ ..-++...||.++++ +|+-|| ....||...|+|.|.+ +.++-...-+.+. +.|. +..
T Consensus 232 ~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~-~~Gl---l~~---------- 293 (335)
T PF04007_consen 232 GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLI-EKGL---LYH---------- 293 (335)
T ss_pred CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHH-HCCC---eEe----------
Confidence 2333 345566689999999 999888 6677999999999975 2233223334553 5555 222
Q ss_pred cCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHhcC
Q 039701 412 RNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQAK 476 (476)
Q Consensus 412 ~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~~~ 476 (476)
.-+.+++.+.+.+.+ ..|++.+.... . +..+.+++.|+++.|
T Consensus 294 ----~~~~~ei~~~v~~~~-------~~~~~~~~~~~----~--------d~~~~i~~~i~~~~~ 335 (335)
T PF04007_consen 294 ----STDPDEIVEYVRKNL-------GKRKKIREKKS----E--------DPTDLIIEEIEEYIK 335 (335)
T ss_pred ----cCCHHHHHHHHHHhh-------hcccchhhhhc----c--------CHHHHHHHHHHHhhC
Confidence 246777777665544 33333333222 1 667777777777654
No 60
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.15 E-value=9.8e-08 Score=92.41 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=70.8
Q ss_pred CCCeEeecccc-HHHhhhCCCceeeecccC----hhhHHHHHHcCCCEecccccccchhhHHHHHHhhc-ceEEeccCCC
Q 039701 331 GRGLLIRGWAP-QVVILSHPAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLR-IGVTIGAERP 404 (476)
Q Consensus 331 ~~nv~~~~~vp-q~~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g-~G~~l~~~~~ 404 (476)
..++.+.++.. -..++..+++ +|.-.. -+++.||+++|+|+|+.+....+. .+. ..+ .|...+.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~-~~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EII-EDGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhh-ccCcceEEeCC---
Confidence 46788888744 4468888888 776542 468999999999999876544332 232 333 6766644
Q ss_pred CCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 039701 405 PSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAK 451 (476)
Q Consensus 405 ~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~ 451 (476)
-+.+++.++|.++++|++..+.+++++++..+.+.
T Consensus 304 ------------~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 338 (348)
T cd03820 304 ------------GDVEALAEALLRLMEDEELRKRMGANARESAERFS 338 (348)
T ss_pred ------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhC
Confidence 36899999999999999777777777766655543
No 61
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.13 E-value=6.5e-08 Score=97.46 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=70.0
Q ss_pred eEeeccccH-HHhhhCCCceeeecc-----cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCC
Q 039701 334 LLIRGWAPQ-VVILSHPAIGGFLTH-----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSL 407 (476)
Q Consensus 334 v~~~~~vpq-~~ll~~~~~~~~I~H-----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~ 407 (476)
+++.+...+ ..++..+++ ++.. ||..++.||+++|+|+|+-|...++......+ ++.|++.. ..
T Consensus 304 v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~--~~----- 373 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQ--VE----- 373 (425)
T ss_pred EEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEE--EC-----
Confidence 344343333 358888887 5442 23345899999999999999988888888877 46666544 23
Q ss_pred cccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 039701 408 ADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 449 (476)
Q Consensus 408 ~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~ 449 (476)
+.++|.++|.++++|++..+.+.+++++....
T Consensus 374 ----------d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~ 405 (425)
T PRK05749 374 ----------DAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQ 405 (425)
T ss_pred ----------CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 67899999999999987777777777776654
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.10 E-value=1.9e-07 Score=91.47 Aligned_cols=145 Identities=19% Similarity=0.165 Sum_probs=96.1
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhCC-CCeEEEEcCCCCCchhHHHHh----cCCCeEeeccccHH---HhhhCCCce
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEATK-KPFIWVIRPGDQAFEKFEERI----EGRGLLIRGWAPQV---VILSHPAIG 352 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~~-~~~i~~~~~~~~~~~~~~~~~----~~~nv~~~~~vpq~---~ll~~~~~~ 352 (476)
.+++..|+.. ..+....+++++++.. .++++...+.. .+.+.+.. ..+||.+.+|+|+. .++..+++-
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~ 267 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGPL--EAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVF 267 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCChh--HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEE
Confidence 4556777764 3345666788887776 55554443322 22222211 35799999999975 478788883
Q ss_pred eeec---ccCh-hhHHHHHHcCCCEecccccccchhhHHHHHHh-hcceEEeccCCCCCCcccccCCcccchhHHHHHHH
Q 039701 353 GFLT---HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQV-LRIGVTIGAERPPSLADEERNGVPVKKEDVKKAIN 427 (476)
Q Consensus 353 ~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~-~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~ 427 (476)
.+-+ +.|. .++.||+++|+|+|+....... ..+ +. -+.|...+. -+.+++.++|.
T Consensus 268 i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i-~~~~~~g~~~~~---------------~d~~~~~~~i~ 327 (357)
T cd03795 268 VFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYV-NLHGVTGLVVPP---------------GDPAALAEAIR 327 (357)
T ss_pred EeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHH-hhCCCceEEeCC---------------CCHHHHHHHHH
Confidence 3223 2343 4789999999999997554444 334 23 466766544 37899999999
Q ss_pred HHhcCChhhHHHHHHHHHHHHH
Q 039701 428 MLMDEGEERDERRRRAREYGET 449 (476)
Q Consensus 428 ~ll~~~~~~~~~r~~a~~l~~~ 449 (476)
++++|++..+.+++++++...+
T Consensus 328 ~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 328 RLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred HHHHCHHHHHHHHHHHHHHHHH
Confidence 9999998777888887776655
No 63
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.06 E-value=4.8e-07 Score=90.52 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=72.0
Q ss_pred CCCeEeeccccHH---HhhhCCCceeeec---ccCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCC
Q 039701 331 GRGLLIRGWAPQV---VILSHPAIGGFLT---HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 403 (476)
Q Consensus 331 ~~nv~~~~~vpq~---~ll~~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~ 403 (476)
.+++.+.+++++. .+|..+++ +|. +.|. .++.||+++|+|+|+... ......+ ++-+.|...+..
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~~- 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAV-ADGETGLLVDGH- 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhh-ccCCceEECCCC-
Confidence 4689999999864 47889998 663 2333 589999999999998654 3455556 466677666443
Q ss_pred CCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 039701 404 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 449 (476)
Q Consensus 404 ~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~ 449 (476)
+.++++++|.++++|++..+++++++++..+.
T Consensus 354 --------------d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~ 385 (405)
T TIGR03449 354 --------------DPADWADALARLLDDPRTRIRMGAAAVEHAAG 385 (405)
T ss_pred --------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 78999999999999887677777777765543
No 64
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.02 E-value=3.2e-07 Score=90.08 Aligned_cols=113 Identities=22% Similarity=0.202 Sum_probs=75.6
Q ss_pred CCCeEeecccc-HH---HhhhCCCceeeeccc----ChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccC
Q 039701 331 GRGLLIRGWAP-QV---VILSHPAIGGFLTHC----GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAE 402 (476)
Q Consensus 331 ~~nv~~~~~vp-q~---~ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~ 402 (476)
..++.+.+|++ +. .++..+++ +|.-. ..+++.||+++|+|+|+... ......+ +.-+.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~-~~~~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIV-DHGVTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhhe-eCCCceEEeCC-
Confidence 56888999998 43 47888888 87743 34789999999999997654 3333445 34445655533
Q ss_pred CCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 039701 403 RPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDIL 472 (476)
Q Consensus 403 ~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~ 472 (476)
.+.+++.+++.++++|++..+.+.+++++...+ .-+.....+++++..+
T Consensus 315 --------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-------~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 315 --------------GDPEDLAEGIEWLLADPDEREELGEAARELAEN-------EFDSRVQAKRYLSLYE 363 (365)
T ss_pred --------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHh
Confidence 478899999999999886555666666554433 2333345555555443
No 65
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.02 E-value=2.5e-07 Score=90.63 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=68.8
Q ss_pred CCCeEeecc-ccHH---HhhhCCCceeeec----c--cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEec
Q 039701 331 GRGLLIRGW-APQV---VILSHPAIGGFLT----H--CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIG 400 (476)
Q Consensus 331 ~~nv~~~~~-vpq~---~ll~~~~~~~~I~----H--gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~ 400 (476)
.+++.+.+. +|+. .++..+++ +|. - |..+++.||+++|+|+|+.+... ...+ ...+.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc
Confidence 568888764 8854 58888888 662 2 33568999999999999977654 3334 3556676654
Q ss_pred cCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 039701 401 AERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 449 (476)
Q Consensus 401 ~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~ 449 (476)
.. +.+++.++|.++++|++..+++++++++..+.
T Consensus 318 ~~---------------d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 351 (366)
T cd03822 318 PG---------------DPAALAEAIRRLLADPELAQALRARAREYARA 351 (366)
T ss_pred CC---------------CHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh
Confidence 43 68999999999999876666666666665554
No 66
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.01 E-value=5.2e-08 Score=96.09 Aligned_cols=317 Identities=12% Similarity=0.099 Sum_probs=163.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQH-GALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDK 88 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (476)
||++++ ++..|+.=+..|.++|.++ +.++.++.+..-...+....+ .+++.. .+. +.-+ .
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~-----~~~i~~-~~~-------~~~~--~--- 62 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLD-----LFHLPP-DYD-------LNIM--S--- 62 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHH-----hcCCCC-Cee-------eecC--C---
Confidence 677665 8999999999999999987 556665555433333333322 112221 000 0000 0
Q ss_pred CCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecC--CC-chhHHHHhHcCCCcEEEecchHHHHHHHhhhhcccc
Q 039701 89 LPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDV--CL-PWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKA 165 (476)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~--~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (476)
.... ..+........+.+++++ .+||+|++-. .. .+++.+|..+|||++.+...- .
T Consensus 63 -~~~~----~~~~~~~~~~~l~~~l~~--~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~------------- 121 (365)
T TIGR00236 63 -PGQT----LGEITSNMLEGLEELLLE--EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-R------------- 121 (365)
T ss_pred -CCCC----HHHHHHHHHHHHHHHHHH--cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-C-------------
Confidence 0001 122222334667778888 8999999764 32 467899999999998642110 0
Q ss_pred CCCCCCCCcccccCCCCCcccccccccchhhhHHH-hHHHHHHhhccccEEEecchhhcCHHHHHHH-Hhcc-CCceEEe
Q 039701 166 HESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKS-FGEPILAAEMASYGVIVNSFEELEPAYVEEY-KNAR-DGKVWCV 242 (476)
Q Consensus 166 ~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~-~~~v~~v 242 (476)
.... ...+|. . ..+ ...+ .++.++..+-. .-+.+ ..-. +.++..+
T Consensus 122 -------s~~~-~~~~~~-----------~--~~r~~~~~------~ad~~~~~s~~-----~~~~l~~~G~~~~~I~vi 169 (365)
T TIGR00236 122 -------TGDR-YSPMPE-----------E--INRQLTGH------IADLHFAPTEQ-----AKDNLLRENVKADSIFVT 169 (365)
T ss_pred -------cCCC-CCCCcc-----------H--HHHHHHHH------HHHhccCCCHH-----HHHHHHHcCCCcccEEEe
Confidence 0000 000111 0 000 1111 12233333211 11111 1112 2457778
Q ss_pred CcccCCC-CCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEc
Q 039701 243 GPVSLCN-KEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIR 316 (476)
Q Consensus 243 Gpl~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~ 316 (476)
|....+. ...... ...+++.+.+. .++.+|+++.+-.... .+.+..+++|+.+. +.++++...
T Consensus 170 gn~~~d~~~~~~~~--------~~~~~~~~~~~--~~~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~ 238 (365)
T TIGR00236 170 GNTVIDALLTNVEI--------AYSSPVLSEFG--EDKRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVH 238 (365)
T ss_pred CChHHHHHHHHHhh--------ccchhHHHhcC--CCCCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 8432111 000000 00112222222 1234566655432111 24567777777653 456666544
Q ss_pred CCCCCchhHHHHh-cCCCeEeeccccH---HHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHHh
Q 039701 317 PGDQAFEKFEERI-EGRGLLIRGWAPQ---VVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQV 392 (476)
Q Consensus 317 ~~~~~~~~~~~~~-~~~nv~~~~~vpq---~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~ 392 (476)
++....+.+.+.. ..+++.+.+.+++ ..++..+++ +|+-.|. .+.||+++|+|+|+++...+++. +. .
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~-~ 310 (365)
T TIGR00236 239 LNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TV-E 310 (365)
T ss_pred CChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HH-h
Confidence 3321111122211 2358888876664 357788888 9997764 47999999999999976555552 32 3
Q ss_pred hcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC
Q 039701 393 LRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG 433 (476)
Q Consensus 393 ~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~ 433 (476)
.|.+..+ . -++++|.+++.++++|+
T Consensus 311 ~g~~~lv--~--------------~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 311 AGTNKLV--G--------------TDKENITKAAKRLLTDP 335 (365)
T ss_pred cCceEEe--C--------------CCHHHHHHHHHHHHhCh
Confidence 5666544 2 36889999999999877
No 67
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.99 E-value=5.4e-07 Score=88.12 Aligned_cols=141 Identities=21% Similarity=0.159 Sum_probs=87.5
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHH---hC--CCCeEEEEcCCCCCchhHHHHh----cCCCeEeeccccHH---HhhhC
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLE---AT--KKPFIWVIRPGDQAFEKFEERI----EGRGLLIRGWAPQV---VILSH 348 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~---~~--~~~~i~~~~~~~~~~~~~~~~~----~~~nv~~~~~vpq~---~ll~~ 348 (476)
++++.+|+... .+.+..++++++ +. +.++++.-.+.. .+.+.... .++|+.+.+++|+. .++..
T Consensus 180 ~~i~~~g~~~~--~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ 255 (355)
T cd03799 180 LRILSVGRLVE--KKGLDYLLEALALLKDRGIDFRLDIVGDGPL--RDELEALIAELGLEDRVTLLGAKSQEEVRELLRA 255 (355)
T ss_pred eEEEEEeeecc--ccCHHHHHHHHHHHhhcCCCeEEEEEECCcc--HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh
Confidence 45566777643 233444444444 32 344444433322 12222211 35789999999854 47778
Q ss_pred CCceeeec----------ccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccc
Q 039701 349 PAIGGFLT----------HCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVK 418 (476)
Q Consensus 349 ~~~~~~I~----------HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t 418 (476)
+++ +|. =|.-+++.||+++|+|+|+.+.. .....+ +....|...+. -+
T Consensus 256 adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i-~~~~~g~~~~~---------------~~ 313 (355)
T cd03799 256 ADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELV-EDGETGLLVPP---------------GD 313 (355)
T ss_pred CCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----Ccchhh-hCCCceEEeCC---------------CC
Confidence 888 665 23347899999999999986653 233345 35447766644 37
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 039701 419 KEDVKKAINMLMDEGEERDERRRRAREYG 447 (476)
Q Consensus 419 ~~~l~~~i~~ll~~~~~~~~~r~~a~~l~ 447 (476)
.+++.++|.++++|++...++.+++++..
T Consensus 314 ~~~l~~~i~~~~~~~~~~~~~~~~a~~~~ 342 (355)
T cd03799 314 PEALADAIERLLDDPELRREMGEAGRARV 342 (355)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 89999999999998866666666665544
No 68
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.97 E-value=1.8e-06 Score=85.91 Aligned_cols=94 Identities=17% Similarity=0.081 Sum_probs=68.5
Q ss_pred CCCeEeeccccHH---HhhhCCCceeeeccc---C-hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCC
Q 039701 331 GRGLLIRGWAPQV---VILSHPAIGGFLTHC---G-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 403 (476)
Q Consensus 331 ~~nv~~~~~vpq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~ 403 (476)
.++|.+.+++|.. .++..+++ ++... | -.++.||+++|+|+|+.-. +.....+ ..-+.|... .
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i-~~~~~g~~~--~- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETV-VDGETGFLC--E- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHh-ccCCceEEe--C-
Confidence 4789999999976 47888888 76432 2 2578899999999999744 3344455 354556554 2
Q ss_pred CCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 039701 404 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYG 447 (476)
Q Consensus 404 ~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~ 447 (476)
.+.+++.++|.++++|++..+++.+++++..
T Consensus 349 -------------~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~ 379 (392)
T cd03805 349 -------------PTPEEFAEAMLKLANDPDLADRMGAAGRKRV 379 (392)
T ss_pred -------------CCHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 2688999999999999877777777776654
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.96 E-value=8.9e-07 Score=86.73 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=87.2
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCchhHHH----HhcCCCeEeeccccHHH---hhhC
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAFEKFEE----RIEGRGLLIRGWAPQVV---ILSH 348 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~~~~~~~~~~~~----~~~~~nv~~~~~vpq~~---ll~~ 348 (476)
.+++..|+... .+....+++++... +.++++.-.+.......+.. .-.++++.+.+|+++.+ ++..
T Consensus 204 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 281 (375)
T cd03821 204 RIILFLGRLHP--KKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALAD 281 (375)
T ss_pred cEEEEEeCcch--hcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhh
Confidence 45666777653 23344455555432 34444333222211111111 11257899999999544 6788
Q ss_pred CCceeeeccc---C-hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHH
Q 039701 349 PAIGGFLTHC---G-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKK 424 (476)
Q Consensus 349 ~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~ 424 (476)
+++ +|.-. | .+++.||+++|+|+|+.+. ......+ +. +.|...+. +.+++.+
T Consensus 282 adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~~----------------~~~~~~~ 337 (375)
T cd03821 282 ADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVDD----------------DVDALAA 337 (375)
T ss_pred CCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeCC----------------ChHHHHH
Confidence 888 65432 2 4689999999999999653 4455566 35 77765533 3499999
Q ss_pred HHHHHhcCChhhHHHHHHHHHH
Q 039701 425 AINMLMDEGEERDERRRRAREY 446 (476)
Q Consensus 425 ~i~~ll~~~~~~~~~r~~a~~l 446 (476)
+|.++++|++..+.+.+++++.
T Consensus 338 ~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 338 ALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred HHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999886666777777666
No 70
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.91 E-value=1.2e-06 Score=86.08 Aligned_cols=144 Identities=19% Similarity=0.231 Sum_probs=87.8
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhCC--CCeEEEEcCCCCCchhHHHHh----cCCCeEeeccccH--H---HhhhCC
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEATK--KPFIWVIRPGDQAFEKFEERI----EGRGLLIRGWAPQ--V---VILSHP 349 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~~--~~~i~~~~~~~~~~~~~~~~~----~~~nv~~~~~vpq--~---~ll~~~ 349 (476)
.+++..|.......+.+..+++++.... .++++ +|.+.. .+.+.+.+ .+++|.+.+|+++ . ..+..+
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~ 258 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNV 258 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcC
Confidence 4556677665333455677788877653 34443 333322 22333322 2578999999853 2 244456
Q ss_pred Cceeeecc----cChhhHHHHHHcCCCEeccc-ccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHH
Q 039701 350 AIGGFLTH----CGWNSVLEAVSNGLPMVTWP-FFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKK 424 (476)
Q Consensus 350 ~~~~~I~H----gG~~s~~eal~~GvP~l~~P-~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~ 424 (476)
++ +|.- |--+++.||+++|+|+|+.- ..+ ....+ +.-.-|..++. -+.+++.+
T Consensus 259 d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~---------------~d~~~la~ 316 (359)
T PRK09922 259 SA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP---------------GNIDEFVG 316 (359)
T ss_pred cE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC---------------CCHHHHHH
Confidence 76 6643 22479999999999999875 322 22345 45556766644 48999999
Q ss_pred HHHHHhcCCh--hhHHHHHHHHHHHH
Q 039701 425 AINMLMDEGE--ERDERRRRAREYGE 448 (476)
Q Consensus 425 ~i~~ll~~~~--~~~~~r~~a~~l~~ 448 (476)
+|.++++|++ ..+.++++++++..
T Consensus 317 ~i~~l~~~~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 317 KLNKVISGEVKYQHDAIPNSIERFYE 342 (359)
T ss_pred HHHHHHhCcccCCHHHHHHHHHHhhH
Confidence 9999999885 23444444444444
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.90 E-value=5e-06 Score=81.34 Aligned_cols=149 Identities=16% Similarity=0.105 Sum_probs=89.1
Q ss_pred eEEEecCCcccC-CHHHHHHHHHHHHhC--CCCeEEEEcCCCCC--chhHHHH----hcCCCeEeeccccH-HHhhhCCC
Q 039701 281 AVYVCLGSLCDC-STRQLIELGLGLEAT--KKPFIWVIRPGDQA--FEKFEER----IEGRGLLIRGWAPQ-VVILSHPA 350 (476)
Q Consensus 281 vv~vs~GS~~~~-~~~~~~~i~~a~~~~--~~~~i~~~~~~~~~--~~~~~~~----~~~~nv~~~~~vpq-~~ll~~~~ 350 (476)
.+++..|..... ..+.+...+..+.+. +.+++++-.+.... .+.+.+. -..++|.+.++.+. ..++..++
T Consensus 186 ~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad 265 (355)
T cd03819 186 PVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALAD 265 (355)
T ss_pred eEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCC
Confidence 566667776542 244444445555442 34544444332210 1111111 12468999999653 35888899
Q ss_pred ceeeec--ccC-hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHH
Q 039701 351 IGGFLT--HCG-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAIN 427 (476)
Q Consensus 351 ~~~~I~--HgG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~ 427 (476)
+-.+-+ +-| .+++.||+++|+|+|+.-. ......+ +.-+.|...+.. +.+++.++|.
T Consensus 266 ~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~~---------------~~~~l~~~i~ 325 (355)
T cd03819 266 IVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVPPG---------------DAEALAQALD 325 (355)
T ss_pred EEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeCCC---------------CHHHHHHHHH
Confidence 833223 223 3599999999999998653 3344555 355577766543 8899999996
Q ss_pred HHh-cCChhhHHHHHHHHHHHHH
Q 039701 428 MLM-DEGEERDERRRRAREYGET 449 (476)
Q Consensus 428 ~ll-~~~~~~~~~r~~a~~l~~~ 449 (476)
.++ .|+++.++++++|++..+.
T Consensus 326 ~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 326 QILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHH
Confidence 554 4777777777777777654
No 72
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.88 E-value=1.6e-06 Score=84.02 Aligned_cols=136 Identities=16% Similarity=0.161 Sum_probs=82.5
Q ss_pred ceEEEecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCchhHHHHh----cCCCeEeeccccHH-HhhhCC
Q 039701 280 SAVYVCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAFEKFEERI----EGRGLLIRGWAPQV-VILSHP 349 (476)
Q Consensus 280 ~vv~vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~----~~~nv~~~~~vpq~-~ll~~~ 349 (476)
..+++..|+... .+....++++++.. +.++++. +.+.. .+.+.+.. ..+++.+.++.+.. +++..+
T Consensus 189 ~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 264 (353)
T cd03811 189 GPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVIL-GDGPL-REELEALAKELGLADRVHFLGFQSNPYPYLKAA 264 (353)
T ss_pred ceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEE-cCCcc-HHHHHHHHHhcCCCccEEEecccCCHHHHHHhC
Confidence 356677787653 23344455555432 3454444 33221 12222111 25688898988754 689899
Q ss_pred Cceeeecc----cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHH---
Q 039701 350 AIGGFLTH----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDV--- 422 (476)
Q Consensus 350 ~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l--- 422 (476)
++ +|.- |.-+++.||+++|+|+|+.... .....+ +..+.|...+.. +.+.+
T Consensus 265 d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~~---------------~~~~~~~~ 322 (353)
T cd03811 265 DL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPVG---------------DEAALAAA 322 (353)
T ss_pred CE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECCC---------------CHHHHHHH
Confidence 88 6632 3346899999999999985443 556677 577788777554 56666
Q ss_pred HHHHHHHhcCChhhHHHHH
Q 039701 423 KKAINMLMDEGEERDERRR 441 (476)
Q Consensus 423 ~~~i~~ll~~~~~~~~~r~ 441 (476)
.+++..++++++..+.+.+
T Consensus 323 ~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 323 ALALLDLLLDPELRERLAA 341 (353)
T ss_pred HHHHHhccCChHHHHHHHH
Confidence 6666677776644444444
No 73
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.88 E-value=4.1e-06 Score=84.72 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=87.7
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCc--h--------hHHHHh----cCCCeEeeccccH
Q 039701 282 VYVCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAF--E--------KFEERI----EGRGLLIRGWAPQ 342 (476)
Q Consensus 282 v~vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~~~~~~~--~--------~~~~~~----~~~nv~~~~~vpq 342 (476)
+++..|... ..+.+..+++|++.. ..++++..+.+.... + .+.+.. ..++|.+.+++++
T Consensus 250 ~i~~vGrl~--~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~ 327 (439)
T TIGR02472 250 PILAISRPD--RRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRP 327 (439)
T ss_pred EEEEEcCCc--ccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCH
Confidence 555667664 345566677777531 234444445432110 0 011111 2567888888876
Q ss_pred HH---hhhCC----Cceeeeccc---C-hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccc
Q 039701 343 VV---ILSHP----AIGGFLTHC---G-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEE 411 (476)
Q Consensus 343 ~~---ll~~~----~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~ 411 (476)
.+ ++..+ ++ ||.-. | -.++.||+++|+|+|+.... .+...+ +.-.-|..++..
T Consensus 328 ~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv~~~--------- 391 (439)
T TIGR02472 328 DDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLVDVL--------- 391 (439)
T ss_pred HHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEeCCC---------
Confidence 55 46544 55 77643 3 35899999999999987653 345555 354567666554
Q ss_pred cCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 039701 412 RNGVPVKKEDVKKAINMLMDEGEERDERRRRAREY 446 (476)
Q Consensus 412 ~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l 446 (476)
++++|+++|.++++|++..+.+.+++++.
T Consensus 392 ------d~~~la~~i~~ll~~~~~~~~~~~~a~~~ 420 (439)
T TIGR02472 392 ------DLEAIASALEDALSDSSQWQLWSRNGIEG 420 (439)
T ss_pred ------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 78999999999999886666666666553
No 74
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.87 E-value=1.4e-05 Score=77.86 Aligned_cols=141 Identities=21% Similarity=0.183 Sum_probs=85.2
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHh-----CCCCeEEEEcCCCCC-chhHHH-H-hcCCCeEeeccccH-HHhhhCCCc
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEA-----TKKPFIWVIRPGDQA-FEKFEE-R-IEGRGLLIRGWAPQ-VVILSHPAI 351 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~-----~~~~~i~~~~~~~~~-~~~~~~-~-~~~~nv~~~~~vpq-~~ll~~~~~ 351 (476)
.+++..|+... .+....++++++. .+.++++.-.+.... ...... . -...++.+.+...+ ..++..+++
T Consensus 194 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi 271 (365)
T cd03807 194 FLIGIVARLHP--QKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDV 271 (365)
T ss_pred eEEEEecccch--hcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCE
Confidence 46667777654 2334445555543 245555543332211 111111 1 12457777776553 468999998
Q ss_pred eeeecccC----hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHH
Q 039701 352 GGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAIN 427 (476)
Q Consensus 352 ~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~ 427 (476)
+|..+. .+++.||+++|+|+|+. |...+...+ ++ .|...+.. +.+++.++|.
T Consensus 272 --~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~~~~---------------~~~~l~~~i~ 327 (365)
T cd03807 272 --FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLVPPG---------------DPEALAEAIE 327 (365)
T ss_pred --EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEeCCC---------------CHHHHHHHHH
Confidence 886544 37999999999999985 444556666 35 56555443 6899999999
Q ss_pred HHhcCChhhHHHHHHHHHHH
Q 039701 428 MLMDEGEERDERRRRAREYG 447 (476)
Q Consensus 428 ~ll~~~~~~~~~r~~a~~l~ 447 (476)
++++|++..+.+.+++++..
T Consensus 328 ~l~~~~~~~~~~~~~~~~~~ 347 (365)
T cd03807 328 ALLADPALRQALGEAARERI 347 (365)
T ss_pred HHHhChHHHHHHHHHHHHHH
Confidence 99998755555555554443
No 75
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.85 E-value=2.9e-07 Score=88.60 Aligned_cols=164 Identities=17% Similarity=0.115 Sum_probs=92.0
Q ss_pred ceEEEecCCcccCCHHHHHHHHHHHHhCCCC-eEEEEcCCCCCchhHHHHhcC-CCeEeeccccHHHhhhCCCceeeecc
Q 039701 280 SAVYVCLGSLCDCSTRQLIELGLGLEATKKP-FIWVIRPGDQAFEKFEERIEG-RGLLIRGWAPQVVILSHPAIGGFLTH 357 (476)
Q Consensus 280 ~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~-~i~~~~~~~~~~~~~~~~~~~-~nv~~~~~vpq~~ll~~~~~~~~I~H 357 (476)
++|.+--||...--...+..++++.+....+ .++....... .+.+.+.... ..+.+.+ .-.+++..+++ +|+-
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~-~~~i~~~~~~~~~~~~~~--~~~~~m~~aDl--al~~ 242 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK-GKDLKEIYGDISEFEISY--DTHKALLEAEF--AFIC 242 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc-HHHHHHHHhcCCCcEEec--cHHHHHHhhhH--HHhc
Confidence 5788888887653234444455666543221 2222222211 1233332211 2333332 33469999999 9999
Q ss_pred cChhhHHHHHHcCCCEeccccc--ccchhhHHHHHH---hhcceEEe-c----cCCCCCCcccccCCcccchhHHHHHHH
Q 039701 358 CGWNSVLEAVSNGLPMVTWPFF--ADQFCNEKLVVQ---VLRIGVTI-G----AERPPSLADEERNGVPVKKEDVKKAIN 427 (476)
Q Consensus 358 gG~~s~~eal~~GvP~l~~P~~--~DQ~~~a~~v~e---~~g~G~~l-~----~~~~~~~~~~~~~~~~~t~~~l~~~i~ 427 (476)
+|..|+ |+..+|+|||+ ++- .-|+.||+++ . ..|+...+ + ..-.+++-+ ...|++.|.+.+.
T Consensus 243 SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEllQ-----~~~t~~~la~~i~ 314 (347)
T PRK14089 243 SGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPELLQ-----EFVTVENLLKAYK 314 (347)
T ss_pred CcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchhhc-----ccCCHHHHHHHHH
Confidence 999999 99999999999 664 3578899998 4 44444333 1 111111222 2588999999887
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHH
Q 039701 428 MLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKL 466 (476)
Q Consensus 428 ~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~ 466 (476)
+. +++.+++..+++.+.+ . +|++.+..+.
T Consensus 315 ~~-----~~~~~~~~~~~l~~~l----~-~~a~~~~A~~ 343 (347)
T PRK14089 315 EM-----DREKFFKKSKELREYL----K-HGSAKNVAKI 343 (347)
T ss_pred HH-----HHHHHHHHHHHHHHHh----c-CCHHHHHHHH
Confidence 62 1224444444444443 2 3444444443
No 76
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.83 E-value=1e-07 Score=93.82 Aligned_cols=131 Identities=18% Similarity=0.125 Sum_probs=84.8
Q ss_pred CceEEEecCCcccC-CHHHHHHHHHHHHhCCC-CeEEEEcCCCCCchhHHHHh---c--CCCeEeeccccHH---HhhhC
Q 039701 279 GSAVYVCLGSLCDC-STRQLIELGLGLEATKK-PFIWVIRPGDQAFEKFEERI---E--GRGLLIRGWAPQV---VILSH 348 (476)
Q Consensus 279 ~~vv~vs~GS~~~~-~~~~~~~i~~a~~~~~~-~~i~~~~~~~~~~~~~~~~~---~--~~nv~~~~~vpq~---~ll~~ 348 (476)
++.|++++|..... ..+.+..+++|++.... ++++...+.....+.+.+.. . .+++.+.+..++. .++..
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 277 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKN 277 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHc
Confidence 45677788776543 35677788888876533 24444333221112333321 1 4688887766543 46778
Q ss_pred CCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHH
Q 039701 349 PAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINM 428 (476)
Q Consensus 349 ~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ 428 (476)
+++ +|+-.| |.+.||+++|+|+|+++.. |. +..+. +.|++..+ . -+.++|.++|.+
T Consensus 278 ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~--~--------------~~~~~i~~~i~~ 333 (363)
T cd03786 278 ADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLV--G--------------TDPEAILAAIEK 333 (363)
T ss_pred CcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEec--C--------------CCHHHHHHHHHH
Confidence 888 999999 7788999999999998743 22 33342 55655443 2 257899999999
Q ss_pred HhcCC
Q 039701 429 LMDEG 433 (476)
Q Consensus 429 ll~~~ 433 (476)
+++++
T Consensus 334 ll~~~ 338 (363)
T cd03786 334 LLSDE 338 (363)
T ss_pred HhcCc
Confidence 99876
No 77
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.83 E-value=2.7e-06 Score=83.69 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=70.8
Q ss_pred CCCeEeeccccHH---HhhhCCCceeeecc----------cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceE
Q 039701 331 GRGLLIRGWAPQV---VILSHPAIGGFLTH----------CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGV 397 (476)
Q Consensus 331 ~~nv~~~~~vpq~---~ll~~~~~~~~I~H----------gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~ 397 (476)
.+++.+.+++|+. .++..+++ +|.- |-.+++.||+++|+|+|+.+.. .+...+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 5789999999865 46888888 6642 2357899999999999987654 356666 4667787
Q ss_pred EeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 039701 398 TIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYG 447 (476)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~ 447 (476)
..+.. +.+++.++|.++++|++..++++.++++..
T Consensus 317 ~~~~~---------------d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 351 (367)
T cd05844 317 LVPEG---------------DVAALAAALGRLLADPDLRARMGAAGRRRV 351 (367)
T ss_pred EECCC---------------CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 66443 779999999999998765666666665544
No 78
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.83 E-value=3.4e-06 Score=84.20 Aligned_cols=94 Identities=27% Similarity=0.313 Sum_probs=68.3
Q ss_pred cCCCeEeeccccHH-HhhhCCCceeee--cc--cCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCC
Q 039701 330 EGRGLLIRGWAPQV-VILSHPAIGGFL--TH--CGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 403 (476)
Q Consensus 330 ~~~nv~~~~~vpq~-~ll~~~~~~~~I--~H--gG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~ 403 (476)
..++|.+.+++++. .++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+. .. +..|.|..+. .
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~-~~~~~g~lv~-~- 347 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----ID-ALPGAELLVA-A- 347 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----cc-ccCCcceEeC-C-
Confidence 45789999999954 58888998 66 32 454 4699999999999998864322 11 1335565543 3
Q ss_pred CCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 039701 404 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYG 447 (476)
Q Consensus 404 ~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~ 447 (476)
+++++.++|.++++|++..+.+.+++++..
T Consensus 348 --------------~~~~la~ai~~ll~~~~~~~~~~~~ar~~v 377 (397)
T TIGR03087 348 --------------DPADFAAAILALLANPAEREELGQAARRRV 377 (397)
T ss_pred --------------CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 689999999999998866667777776654
No 79
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.81 E-value=2e-06 Score=86.96 Aligned_cols=222 Identities=14% Similarity=0.089 Sum_probs=118.7
Q ss_pred hhhcCHHHHHHHHhccCCceEEeC-cccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHH
Q 039701 220 FEELEPAYVEEYKNARDGKVWCVG-PVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLI 298 (476)
Q Consensus 220 ~~~l~~~~~~~~~~~~~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~ 298 (476)
+..+|.+++.. .+-++.||| |+........ +.++..+-+.-.+++++|-+--||-.+-=...+.
T Consensus 368 IfPFE~~~y~~----~gv~v~yVGHPL~d~i~~~~-----------~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllP 432 (608)
T PRK01021 368 ILPFEQNLFKD----SPLRTVYLGHPLVETISSFS-----------PNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLT 432 (608)
T ss_pred cCccCHHHHHh----cCCCeEEECCcHHhhcccCC-----------CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 34556665543 458899999 8866522110 1223333333334556888888986542234445
Q ss_pred HHHHHHH--hC--CCCeEEEEcCCCCCchhHHHHhcCCC---eEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCC
Q 039701 299 ELGLGLE--AT--KKPFIWVIRPGDQAFEKFEERIEGRG---LLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGL 371 (476)
Q Consensus 299 ~i~~a~~--~~--~~~~i~~~~~~~~~~~~~~~~~~~~n---v~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~Gv 371 (476)
.+++|.+ .. +.++++...+... .+.+.+.....+ +.+..--...+++..|++ .+.-+|- .|.|+..+|+
T Consensus 433 v~l~aa~~~~l~~~l~fvvp~a~~~~-~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~ 508 (608)
T PRK01021 433 IQVQAFLASSLASTHQLLVSSANPKY-DHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQT 508 (608)
T ss_pred HHHHHHHHHHhccCeEEEEecCchhh-HHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCC
Confidence 5677766 33 4455554333221 122333222212 122211012579999998 8888774 5679999999
Q ss_pred CEeccc-ccccchhhHHHHHHhh---cceE---EeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHH
Q 039701 372 PMVTWP-FFADQFCNEKLVVQVL---RIGV---TIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAR 444 (476)
Q Consensus 372 P~l~~P-~~~DQ~~~a~~v~e~~---g~G~---~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~ 444 (476)
|||++= ...=....|+++. +. =+|. -++..-.+++-. +....|++.|.+++ ++|.|+++++++++..+
T Consensus 509 PmVV~YK~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPEllq---gQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~ 583 (608)
T PRK01021 509 PTIVTCQLRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPEFIG---GKKDFQPEEVAAAL-DILKTSQSKEKQKDACR 583 (608)
T ss_pred CEEEEEecCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchhhcC---CcccCCHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 999852 2222345667665 41 0110 011111111221 00258999999997 88888866666666666
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 039701 445 EYGETAKTAIEEGGSSYLNIKLLIKDIL 472 (476)
Q Consensus 445 ~l~~~~~~~~~~gg~~~~~~~~~~~~i~ 472 (476)
++.+.+ |.....-+|.++.|-
T Consensus 584 ~lr~~L-------g~~~~~~~~~~~~~~ 604 (608)
T PRK01021 584 DLYQAM-------NESASTMKECLSLIF 604 (608)
T ss_pred HHHHHh-------cCCCCCHHHHHHHHH
Confidence 665554 223345566665553
No 80
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.80 E-value=9.3e-06 Score=81.07 Aligned_cols=126 Identities=17% Similarity=0.096 Sum_probs=75.3
Q ss_pred ceEEEecCCcccCCHHHHHHHHHHHH---h--CCCCeEEEEcCCCCCchhHHHHh----cCCCeEeeccccHH---Hhhh
Q 039701 280 SAVYVCLGSLCDCSTRQLIELGLGLE---A--TKKPFIWVIRPGDQAFEKFEERI----EGRGLLIRGWAPQV---VILS 347 (476)
Q Consensus 280 ~vv~vs~GS~~~~~~~~~~~i~~a~~---~--~~~~~i~~~~~~~~~~~~~~~~~----~~~nv~~~~~vpq~---~ll~ 347 (476)
..+++..|.... .+....+++|+. + .+.++++.-.+.. .+.+.+.. ..++|.+.+|+|+. .+++
T Consensus 193 ~~~i~~~grl~~--~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~ 268 (398)
T cd03796 193 KITIVVISRLVY--RKGIDLLVGIIPEICKKHPNVRFIIGGDGPK--RILLEEMREKYNLQDRVELLGAVPHERVRDVLV 268 (398)
T ss_pred ceEEEEEeccch--hcCHHHHHHHHHHHHhhCCCEEEEEEeCCch--HHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHH
Confidence 356667776643 233344444443 2 3445454433221 22233221 24679999999854 4788
Q ss_pred CCCceeeec---ccCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHH
Q 039701 348 HPAIGGFLT---HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVK 423 (476)
Q Consensus 348 ~~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~ 423 (476)
.+++ +|. +-|. .++.||+++|+|+|+.+..+ ....+ +. |.+ .+ .. .+.+++.
T Consensus 269 ~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~-~~-~~--------------~~~~~l~ 324 (398)
T cd03796 269 QGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMI-LL-AE--------------PDVESIV 324 (398)
T ss_pred hCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cce-ee-cC--------------CCHHHHH
Confidence 8888 664 3344 39999999999999977753 23344 23 333 22 12 3679999
Q ss_pred HHHHHHhcCC
Q 039701 424 KAINMLMDEG 433 (476)
Q Consensus 424 ~~i~~ll~~~ 433 (476)
++|.+++++.
T Consensus 325 ~~l~~~l~~~ 334 (398)
T cd03796 325 RKLEEAISIL 334 (398)
T ss_pred HHHHHHHhCh
Confidence 9999999864
No 81
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.77 E-value=6.7e-06 Score=80.68 Aligned_cols=134 Identities=18% Similarity=0.225 Sum_probs=79.6
Q ss_pred EEecCCcccCCHHHHHHHHHHHHhCC--CCeEEEEcCCCCCchhHHHH-----hcCCCeEeeccccHHH---hhhCCCce
Q 039701 283 YVCLGSLCDCSTRQLIELGLGLEATK--KPFIWVIRPGDQAFEKFEER-----IEGRGLLIRGWAPQVV---ILSHPAIG 352 (476)
Q Consensus 283 ~vs~GS~~~~~~~~~~~i~~a~~~~~--~~~i~~~~~~~~~~~~~~~~-----~~~~nv~~~~~vpq~~---ll~~~~~~ 352 (476)
++..|+... .+.+..+++|++... .++++.-.+... +.+.+. -..++|.+.+++++.+ ++..+++
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~~--~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~- 270 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADHN--TPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL- 270 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCCc--chHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE-
Confidence 345677653 345566777777654 554444333221 122211 1357999999999764 5666777
Q ss_pred eeecccCh-----hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHH
Q 039701 353 GFLTHCGW-----NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAIN 427 (476)
Q Consensus 353 ~~I~HgG~-----~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~ 427 (476)
++-+.-. +++.||+++|+|+|+..... +...+ +. -|...+.. + .+.++|.
T Consensus 271 -~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~---------------~--~l~~~i~ 325 (363)
T cd04955 271 -FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVG---------------D--DLASLLE 325 (363)
T ss_pred -EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCc---------------h--HHHHHHH
Confidence 6554433 47899999999999876542 22233 23 23333222 1 1999999
Q ss_pred HHhcCChhhHHHHHHHHHH
Q 039701 428 MLMDEGEERDERRRRAREY 446 (476)
Q Consensus 428 ~ll~~~~~~~~~r~~a~~l 446 (476)
++++|++....+.+++++.
T Consensus 326 ~l~~~~~~~~~~~~~~~~~ 344 (363)
T cd04955 326 ELEADPEEVSAMAKAARER 344 (363)
T ss_pred HHHhCHHHHHHHHHHHHHH
Confidence 9999875555555555544
No 82
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.76 E-value=1.7e-05 Score=85.41 Aligned_cols=156 Identities=13% Similarity=0.175 Sum_probs=96.1
Q ss_pred cccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCC-----CCeEEEEcCCCCC----------chhHHHHh---
Q 039701 268 GCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATK-----KPFIWVIRPGDQA----------FEKFEERI--- 329 (476)
Q Consensus 268 ~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~-----~~~i~~~~~~~~~----------~~~~~~~~--- 329 (476)
++..|+.. ++++ +.+..|... +.+.+..+++|+.... ..+.+.++..... ...+...+
T Consensus 469 ~l~r~~~~-pdkp-vIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 469 EIMRFFTN-PRKP-MILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred HHHhhccc-CCCc-EEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 45566643 3343 344556654 3455666777776542 2444445543210 01111111
Q ss_pred -cCCCeEeeccccHHH---hhhCC----Cceeeecc---cCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceE
Q 039701 330 -EGRGLLIRGWAPQVV---ILSHP----AIGGFLTH---CGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGV 397 (476)
Q Consensus 330 -~~~nv~~~~~vpq~~---ll~~~----~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~ 397 (476)
..++|.+.+++++.+ ++..+ ++ ||+- =|. .++.||+++|+|+|+....+ ....+ +...-|.
T Consensus 545 gL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGl 617 (1050)
T TIGR02468 545 DLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGL 617 (1050)
T ss_pred CCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEE
Confidence 246788888988764 55544 35 7764 343 58899999999999986532 33444 3545677
Q ss_pred EeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 039701 398 TIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 449 (476)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~ 449 (476)
.++.. +.++|+++|.++++|++..+.+.+++++....
T Consensus 618 LVdP~---------------D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~ 654 (1050)
T TIGR02468 618 LVDPH---------------DQQAIADALLKLVADKQLWAECRQNGLKNIHL 654 (1050)
T ss_pred EECCC---------------CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 66554 78899999999999987777787777766544
No 83
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.73 E-value=3e-05 Score=74.43 Aligned_cols=328 Identities=15% Similarity=0.212 Sum_probs=189.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHC--CCeEEEEe-CCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQH--GALVTIVT-TPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~r--GH~Vt~~~-~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (476)
.+.+..-+.|-++-.++|.++|.++ ++.|++-+ |+...+.+++... ..+...-+|++
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~------~~v~h~YlP~D-------------- 110 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG------DSVIHQYLPLD-------------- 110 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC------CCeEEEecCcC--------------
Confidence 5666667899999999999999999 99988876 6767776666632 22444443421
Q ss_pred CCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEE-ecCCC-chhHHHHhHcCCCcEEEecchHHHHHHHhhhhcccc
Q 039701 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLI-SDVCL-PWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKA 165 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI-~D~~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 165 (476)
....++.+++. ++||++| .+.-+ +....-+++.|+|.+.+..=
T Consensus 111 -----------------~~~~v~rFl~~--~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR---------------- 155 (419)
T COG1519 111 -----------------LPIAVRRFLRK--WRPKLLIIMETELWPNLINELKRRGIPLVLVNAR---------------- 155 (419)
T ss_pred -----------------chHHHHHHHHh--cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee----------------
Confidence 11245667777 8999766 44433 33467778999999985211
Q ss_pred CCCCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccCCceEEeCcc
Q 039701 166 HESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARDGKVWCVGPV 245 (476)
Q Consensus 166 ~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGpl 245 (476)
++.+....+.+...+.+.+. ...+.++..+-. +.+.|.... . ++|.-.|-+
T Consensus 156 ---------------------LS~rS~~~y~k~~~~~~~~~---~~i~li~aQse~--D~~Rf~~LG--a-~~v~v~GNl 206 (419)
T COG1519 156 ---------------------LSDRSFARYAKLKFLARLLF---KNIDLILAQSEE--DAQRFRSLG--A-KPVVVTGNL 206 (419)
T ss_pred ---------------------echhhhHHHHHHHHHHHHHH---HhcceeeecCHH--HHHHHHhcC--C-cceEEecce
Confidence 22222332222333333332 334455554422 111111111 1 235555644
Q ss_pred cCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhC--CCCeEEEEcCCCCCch
Q 039701 246 SLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEAT--KKPFIWVIRPGDQAFE 323 (476)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~--~~~~i~~~~~~~~~~~ 323 (476)
=........... .-..+...++.. ++ +.|..+|.. ...+..-....++.+. +...||+=+..+.. .
T Consensus 207 Kfd~~~~~~~~~-------~~~~~r~~l~~~--r~-v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHpERf-~ 274 (419)
T COG1519 207 KFDIEPPPQLAA-------ELAALRRQLGGH--RP-VWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHPERF-K 274 (419)
T ss_pred eecCCCChhhHH-------HHHHHHHhcCCC--Cc-eEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCChhhH-H
Confidence 222111100000 001233344432 22 445455532 2233333344444432 34455554433321 0
Q ss_pred hHHHHh-----------------cCCCeEeeccccH-HHhhhCCCc----eeeecccChhhHHHHHHcCCCEeccccccc
Q 039701 324 KFEERI-----------------EGRGLLIRGWAPQ-VVILSHPAI----GGFLTHCGWNSVLEAVSNGLPMVTWPFFAD 381 (476)
Q Consensus 324 ~~~~~~-----------------~~~nv~~~~~vpq-~~ll~~~~~----~~~I~HgG~~s~~eal~~GvP~l~~P~~~D 381 (476)
.+.+.. ...+|++.+-+-- ..+++-+++ +.++-+||+| ..|++++|+|+|.=|+..-
T Consensus 275 ~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~N 353 (419)
T COG1519 275 AVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFN 353 (419)
T ss_pred HHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCcccc
Confidence 111111 1235666665543 345554444 2245699998 6799999999999999999
Q ss_pred chhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 039701 382 QFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTA 453 (476)
Q Consensus 382 Q~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~ 453 (476)
|.+.++++ ++.|.|+.+ + +++.|.+++..+++|+++++.|.+++.++-+..+.+
T Consensus 354 f~ei~~~l-~~~ga~~~v--~---------------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ga 407 (419)
T COG1519 354 FSDIAERL-LQAGAGLQV--E---------------DADLLAKAVELLLADEDKREAYGRAGLEFLAQNRGA 407 (419)
T ss_pred HHHHHHHH-HhcCCeEEE--C---------------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999 699999887 3 268899999999999999999999999988887744
No 84
>PLN02949 transferase, transferring glycosyl groups
Probab=98.72 E-value=5.2e-05 Score=76.64 Aligned_cols=378 Identities=12% Similarity=0.042 Sum_probs=183.3
Q ss_pred CcEEEEEcCCC---ccChHHHHHHHHHHHHCCC--eEEEEeCCcchhh---hhhHhhhcccCCCce------EEEEeeCC
Q 039701 8 QLHFILFPFLA---QGHMIPMIDIARLLAQHGA--LVTIVTTPMNAAR---FQNVIERGIQSGLRI------QVIEFYFP 73 (476)
Q Consensus 8 ~~~vl~~~~p~---~GHv~P~l~La~~L~~rGH--~Vt~~~~~~~~~~---~~~~~~~~~~~g~~i------~~~~i~~~ 73 (476)
+++|+|+.+.. .|==.-++..+..|.++|| +|++.|+..+... +.+... .+++ .|+.+..-
T Consensus 33 ~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~-----~~~i~~~~~~~~v~l~~~ 107 (463)
T PLN02949 33 KRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARD-----RFGVELLSPPKVVHLRKR 107 (463)
T ss_pred CcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHh-----hcceecCCCceEEEeccc
Confidence 67888887653 3555778899999999999 7777775432211 122221 1122 22222100
Q ss_pred CcccCCCCCCCCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC-chhHHHHhHcCCCcEEEecchHH
Q 039701 74 CQEVGLPEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCL-PWTVSSACKFNVPRIVFHGFSCF 152 (476)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~-~~~~~~A~~~giP~v~~~~~~~~ 152 (476)
+.++. ..+..+..+.+....+...++.+.+ ..| .|+.|... +....+++.+++|.+.+++.|..
T Consensus 108 ---~~~~~--------~~~~~~t~~~~~~~~~~l~~~~~~~---~~p-~v~vDt~~~~~~~pl~~~~~~~v~~yvH~p~~ 172 (463)
T PLN02949 108 ---KWIEE--------ETYPRFTMIGQSLGSVYLAWEALCK---FTP-LYFFDTSGYAFTYPLARLFGCKVVCYTHYPTI 172 (463)
T ss_pred ---ccccc--------ccCCceehHHHHHHHHHHHHHHHHh---cCC-CEEEeCCCcccHHHHHHhcCCcEEEEEeCCcc
Confidence 00111 1112233344444444444454433 244 57788765 45667788779999999888855
Q ss_pred HHHHHhhhhccccCCCCCCCCcccccCCCCCcccccccccchhhh--HHHhHHHHH-HhhccccEEEecchhhcCHHHHH
Q 039701 153 CLLCLHSLSVSKAHESVSSDSEYFLVPGLPDRVEITKAQLPEILK--LKSFGEPIL-AAEMASYGVIVNSFEELEPAYVE 229 (476)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~--~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~ 229 (476)
..-+....-. .. +...+.-.+.........+ +.+.+..+. .....++.++.||-.-- +
T Consensus 173 ~~dm~~~v~~----------~~----~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~-----~ 233 (463)
T PLN02949 173 SSDMISRVRD----------RS----SMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTK-----S 233 (463)
T ss_pred hHHHHHHHhh----------cc----cccCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHH-----H
Confidence 4322111100 00 0000000011111111111 122222111 12356677888874311 1
Q ss_pred HHHhccC--CceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHh-
Q 039701 230 EYKNARD--GKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEA- 306 (476)
Q Consensus 230 ~~~~~~~--~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~- 306 (476)
.+...++ .++..+-|-....... +.. ....+++ .++++.|.+.. .+....+++|++.
T Consensus 234 ~l~~~~~~~~~i~vvyp~vd~~~~~-------------~~~----~~~~~~~-~~il~vGR~~~--~Kg~~llI~A~~~l 293 (463)
T PLN02949 234 HIEALWRIPERIKRVYPPCDTSGLQ-------------ALP----LERSEDP-PYIISVAQFRP--EKAHALQLEAFALA 293 (463)
T ss_pred HHHHHcCCCCCeEEEcCCCCHHHcc-------------cCC----ccccCCC-CEEEEEEeeec--cCCHHHHHHHHHHH
Confidence 1222221 2333343322110000 000 0001111 34566676542 3444445555543
Q ss_pred --------CCCCeEEEEcCCCC-C---chhHHHHh----cCCCeEeeccccHHH---hhhCCCceeeec---ccChh-hH
Q 039701 307 --------TKKPFIWVIRPGDQ-A---FEKFEERI----EGRGLLIRGWAPQVV---ILSHPAIGGFLT---HCGWN-SV 363 (476)
Q Consensus 307 --------~~~~~i~~~~~~~~-~---~~~~~~~~----~~~nv~~~~~vpq~~---ll~~~~~~~~I~---HgG~~-s~ 363 (476)
.+.+++..-+.... . .+.+.+.+ ..++|.+.+++|+.+ +|..+++ +|+ +-|.| ++
T Consensus 294 ~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivv 371 (463)
T PLN02949 294 LEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISV 371 (463)
T ss_pred HHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHH
Confidence 23444443332211 0 12233322 257899999998654 6778887 763 23443 79
Q ss_pred HHHHHcCCCEecccccccchhhHHHHHHhh-c-ceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcC-ChhhHHHH
Q 039701 364 LEAVSNGLPMVTWPFFADQFCNEKLVVQVL-R-IGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDE-GEERDERR 440 (476)
Q Consensus 364 ~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~-g-~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~-~~~~~~~r 440 (476)
.||+++|+|+|+....+--. ..+.+.- | .|.. . -+.++++++|.+++++ ++.++++.
T Consensus 372 lEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l---~--------------~~~~~la~ai~~ll~~~~~~r~~m~ 431 (463)
T PLN02949 372 VEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFL---A--------------TTVEEYADAILEVLRMRETERLEIA 431 (463)
T ss_pred HHHHHcCCcEEEeCCCCCcc---eeeecCCCCccccc---C--------------CCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999986543110 1110110 1 1211 1 2678999999999984 45566777
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHh
Q 039701 441 RRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 474 (476)
Q Consensus 441 ~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~ 474 (476)
+++++-..++..+ +..+++.+.++++
T Consensus 432 ~~ar~~~~~FS~e--------~~~~~~~~~i~~l 457 (463)
T PLN02949 432 AAARKRANRFSEQ--------RFNEDFKDAIRPI 457 (463)
T ss_pred HHHHHHHHHcCHH--------HHHHHHHHHHHHH
Confidence 7777665554433 5666666655543
No 85
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.72 E-value=1e-05 Score=80.06 Aligned_cols=161 Identities=17% Similarity=0.111 Sum_probs=94.9
Q ss_pred ceEEEecCCcccCCHHHHHHHHHHHHhC---------CCCeEEEEcCCCCCchhHHHHh----cCCCeEeecccc-HHHh
Q 039701 280 SAVYVCLGSLCDCSTRQLIELGLGLEAT---------KKPFIWVIRPGDQAFEKFEERI----EGRGLLIRGWAP-QVVI 345 (476)
Q Consensus 280 ~vv~vs~GS~~~~~~~~~~~i~~a~~~~---------~~~~i~~~~~~~~~~~~~~~~~----~~~nv~~~~~vp-q~~l 345 (476)
..+.+..|.... .+....+++|+... +.++++.-.+.. .+.+.... ...++.+.++.. ...+
T Consensus 194 ~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 269 (374)
T TIGR03088 194 SVVVGTVGRLQA--VKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPA--RGACEQMVRAAGLAHLVWLPGERDDVPAL 269 (374)
T ss_pred CeEEEEEecCCc--ccCHHHHHHHHHHHHHhCcccccceEEEEecCCch--HHHHHHHHHHcCCcceEEEcCCcCCHHHH
Confidence 356677787653 23333344444321 345555443322 22333322 135677766655 3468
Q ss_pred hhCCCceeeec--c--cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhH
Q 039701 346 LSHPAIGGFLT--H--CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKED 421 (476)
Q Consensus 346 l~~~~~~~~I~--H--gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~ 421 (476)
+..+++ +|. + |--+++.||+++|+|+|+.... .+...+ +.-..|..++.. +.++
T Consensus 270 ~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~~~~---------------d~~~ 327 (374)
T TIGR03088 270 MQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALVPPG---------------DAVA 327 (374)
T ss_pred HHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEeCCC---------------CHHH
Confidence 999998 663 2 3356899999999999996653 345555 354567666543 7789
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 039701 422 VKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 422 l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~ 473 (476)
+.++|.++++|++..+.+.+++++.... .-+.....+++.+..++
T Consensus 328 la~~i~~l~~~~~~~~~~~~~a~~~~~~-------~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 328 LARALQPYVSDPAARRAHGAAGRARAEQ-------QFSINAMVAAYAGLYDQ 372 (374)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHH
Confidence 9999999998876555666666554432 33333555555554443
No 86
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.70 E-value=2.3e-05 Score=75.90 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=78.4
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHH---Hh--cCCCeEeeccccHH---HhhhCCCcee
Q 039701 282 VYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEE---RI--EGRGLLIRGWAPQV---VILSHPAIGG 353 (476)
Q Consensus 282 v~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~---~~--~~~nv~~~~~vpq~---~ll~~~~~~~ 353 (476)
+.+..|... ..+....+++++++.+.++++.-.+... +.+.. .. ..+++.+.+++++. .+++.+++-+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~--~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v 248 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP--DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALL 248 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH--HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEE
Confidence 334556663 3345566788888888887765544331 11111 11 25799999999975 4688888822
Q ss_pred eec--ccCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHh
Q 039701 354 FLT--HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLM 430 (476)
Q Consensus 354 ~I~--HgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll 430 (476)
+-+ +-|. .++.||+++|+|+|+.... .....+ +.-.-|... . . .+++.++|.+++
T Consensus 249 ~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~--~-------------~--~~~l~~~l~~l~ 306 (335)
T cd03802 249 FPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLV--D-------------S--VEELAAAVARAD 306 (335)
T ss_pred eCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEe--C-------------C--HHHHHHHHHHHh
Confidence 222 2343 5899999999999987653 333444 243345433 2 2 789999999887
Q ss_pred cC
Q 039701 431 DE 432 (476)
Q Consensus 431 ~~ 432 (476)
+.
T Consensus 307 ~~ 308 (335)
T cd03802 307 RL 308 (335)
T ss_pred cc
Confidence 53
No 87
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.70 E-value=8.5e-06 Score=79.80 Aligned_cols=92 Identities=15% Similarity=0.072 Sum_probs=64.6
Q ss_pred CCCeEeeccccH-HHhhhCCCceeeecc----cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCC
Q 039701 331 GRGLLIRGWAPQ-VVILSHPAIGGFLTH----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPP 405 (476)
Q Consensus 331 ~~nv~~~~~vpq-~~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~ 405 (476)
++++.+.++..+ ..++..+++ +|+- |-.+++.||+++|+|+|+....+ ....+ +. +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCC----
Confidence 568888888554 468888888 6643 34578999999999999865543 44455 35 55544422
Q ss_pred CCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 039701 406 SLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRARE 445 (476)
Q Consensus 406 ~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~ 445 (476)
-++++++++|.++++|++..+.++.++++
T Consensus 316 -----------~~~~~~a~~i~~l~~~~~~~~~~~~~~~~ 344 (358)
T cd03812 316 -----------ESPEIWAEEILKLKSEDRRERSSESIKKK 344 (358)
T ss_pred -----------CCHHHHHHHHHHHHhCcchhhhhhhhhhc
Confidence 35799999999999999655555444433
No 88
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.69 E-value=1.1e-05 Score=78.88 Aligned_cols=125 Identities=15% Similarity=0.152 Sum_probs=78.2
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCchhHHHHh----cCCCeEeeccccH-HHhhhCCC
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAFEKFEERI----EGRGLLIRGWAPQ-VVILSHPA 350 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~----~~~nv~~~~~vpq-~~ll~~~~ 350 (476)
.+++..|+... .+....++++++.. +.++++.-.+.. .+.+.+.. ..+|+.+.++..+ ..++..++
T Consensus 189 ~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 264 (360)
T cd04951 189 FVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAGDGPL--RATLERLIKALGLSNRVKLLGLRDDIAAYYNAAD 264 (360)
T ss_pred EEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEcCCCc--HHHHHHHHHhcCCCCcEEEecccccHHHHHHhhc
Confidence 56677777643 33444455555432 456665543332 22232221 2468888888765 46898888
Q ss_pred ceeeecccC----hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHH
Q 039701 351 IGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAI 426 (476)
Q Consensus 351 ~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i 426 (476)
+ +|.-.. .+++.||+++|+|+|+. |...+...+ +. .|..... -+.+++.++|
T Consensus 265 ~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~~---------------~~~~~~~~~i 320 (360)
T cd04951 265 L--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVPI---------------SDPEALANKI 320 (360)
T ss_pred e--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeCC---------------CCHHHHHHHH
Confidence 8 655322 46899999999999974 555666666 35 3444433 4788999999
Q ss_pred HHHhcCC
Q 039701 427 NMLMDEG 433 (476)
Q Consensus 427 ~~ll~~~ 433 (476)
.++++++
T Consensus 321 ~~ll~~~ 327 (360)
T cd04951 321 DEILKMS 327 (360)
T ss_pred HHHHhCC
Confidence 9998533
No 89
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.67 E-value=3.1e-06 Score=82.88 Aligned_cols=139 Identities=12% Similarity=0.157 Sum_probs=92.6
Q ss_pred EEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHH---HhhhCCCceeeecccC
Q 039701 283 YVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQV---VILSHPAIGGFLTHCG 359 (476)
Q Consensus 283 ~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~---~ll~~~~~~~~I~HgG 359 (476)
++..|++.. .+....+++|++..+.++++.-.+.. .+.+.+ ...+||.+.+++|+. .++..+++-++-+.-|
T Consensus 198 il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~~--~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~ 272 (351)
T cd03804 198 YLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGPE--LDRLRA-KAGPNVTFLGRVSDEELRDLYARARAFLFPAEED 272 (351)
T ss_pred EEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECChh--HHHHHh-hcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCC
Confidence 445666553 35567788888888877666554432 223333 347899999999974 4788888833223444
Q ss_pred h-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC-hhhH
Q 039701 360 W-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG-EERD 437 (476)
Q Consensus 360 ~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~-~~~~ 437 (476)
. .++.||+++|+|+|+....+ ....+ +.-+.|..++.. +.+++.++|.++++|+ +.++
T Consensus 273 ~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~~---------------~~~~la~~i~~l~~~~~~~~~ 332 (351)
T cd03804 273 FGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEEQ---------------TVESLAAAVERFEKNEDFDPQ 332 (351)
T ss_pred CCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCCC---------------CHHHHHHHHHHHHhCcccCHH
Confidence 4 36789999999999976533 34445 355677776544 7888999999999987 4445
Q ss_pred HHHHHHHHH
Q 039701 438 ERRRRAREY 446 (476)
Q Consensus 438 ~~r~~a~~l 446 (476)
.+++++++.
T Consensus 333 ~~~~~~~~~ 341 (351)
T cd03804 333 AIRAHAERF 341 (351)
T ss_pred HHHHHHHhc
Confidence 555555443
No 90
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.64 E-value=7.6e-05 Score=74.11 Aligned_cols=168 Identities=16% Similarity=0.130 Sum_probs=98.1
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhC--CCCeEEEEcCCCCC--chhHHHHh-----cCCCeEe-eccccHH---Hhhh
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEAT--KKPFIWVIRPGDQA--FEKFEERI-----EGRGLLI-RGWAPQV---VILS 347 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~--~~~~i~~~~~~~~~--~~~~~~~~-----~~~nv~~-~~~vpq~---~ll~ 347 (476)
.+++..|.... .+.+..+++|++.. +.++++..++.... .+.+.+.. ...++.+ .+++++. .++.
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 279 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLS 279 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHH
Confidence 34555676543 35566677777764 45666555443321 11122211 1234554 4677754 4788
Q ss_pred CCCceeeecc----cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHH
Q 039701 348 HPAIGGFLTH----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVK 423 (476)
Q Consensus 348 ~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~ 423 (476)
.+++ +|.= |...++.||+++|+|+|+... ......+ +..+.|..++..+ .+..-..+++.
T Consensus 280 ~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~---------~~~~~~~~~l~ 343 (388)
T TIGR02149 280 NAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDN---------SDADGFQAELA 343 (388)
T ss_pred hCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCC---------CcccchHHHHH
Confidence 8888 7642 223577999999999998654 3455666 4666787775541 00011238999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 039701 424 KAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 424 ~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~ 473 (476)
++|.++++|++..+++.+++++...+ --+-....+++++..++
T Consensus 344 ~~i~~l~~~~~~~~~~~~~a~~~~~~-------~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 344 KAINILLADPELAKKMGIAGRKRAEE-------EFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHh
Confidence 99999999887666777777665432 22223555555555444
No 91
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.63 E-value=7.6e-06 Score=80.09 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=66.8
Q ss_pred cCCCeEeeccccHH---HhhhCCCceeeecc----cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccC
Q 039701 330 EGRGLLIRGWAPQV---VILSHPAIGGFLTH----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAE 402 (476)
Q Consensus 330 ~~~nv~~~~~vpq~---~ll~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~ 402 (476)
.++++.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+ +. .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~--~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GD--AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cC--ceeeeCC-
Confidence 46899999999876 46778887 6533 3346899999999999986542 222233 23 2333433
Q ss_pred CCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 039701 403 RPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 449 (476)
Q Consensus 403 ~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~ 449 (476)
-+.+++.++|.++++|++....+.+++++..+.
T Consensus 321 --------------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 353 (365)
T cd03809 321 --------------LDPEALAAAIERLLEDPALREELRERGLARAKR 353 (365)
T ss_pred --------------CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 378999999999999987666667666654444
No 92
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.47 E-value=4.4e-05 Score=74.91 Aligned_cols=314 Identities=16% Similarity=0.146 Sum_probs=162.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC-CCeEEEEeCC-cchhh----hhhHhhhcccCCCceEEEEeeCCCcccCCCCCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQH-GALVTIVTTP-MNAAR----FQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~r-GH~Vt~~~~~-~~~~~----~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~ 83 (476)
||++++ +++..+.=+.++.++|.+. +.++.++.+. ...+. ...... .++++. + ...-..
T Consensus 2 ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~----~~~~~~----~------~~~~~~ 66 (365)
T TIGR03568 2 KICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEK----DGFDID----E------KIEILL 66 (365)
T ss_pred eEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHH----cCCCCC----C------cccccc
Confidence 566655 8888999999999999875 7888777653 22221 112110 011111 0 000000
Q ss_pred CCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecC--CC-chhHHHHhHcCCCcEEEecchHHHHHHHhhh
Q 039701 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDV--CL-PWTVSSACKFNVPRIVFHGFSCFCLLCLHSL 160 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~--~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 160 (476)
.. +.-....+........+.+++++ .+||+||+-. +. .+++.+|..+|||++-+.-.-
T Consensus 67 ~~-------~~~~~~~~~~~~~~~~~~~~~~~--~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~---------- 127 (365)
T TIGR03568 67 DS-------DSNAGMAKSMGLTIIGFSDAFER--LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGE---------- 127 (365)
T ss_pred CC-------CCCCCHHHHHHHHHHHHHHHHHH--hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCc----------
Confidence 00 00112223333445567778888 8999988544 33 478999999999999642221
Q ss_pred hccccCCCCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHH-Hhcc-CCc
Q 039701 161 SVSKAHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEY-KNAR-DGK 238 (476)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~-~~~ 238 (476)
...+.+. .. .+....++. +..+..+- .+-+.. ..-. +.+
T Consensus 128 ----------------rs~~~~e----------E~--~r~~i~~la------~l~f~~t~-----~~~~~L~~eg~~~~~ 168 (365)
T TIGR03568 128 ----------------VTEGAID----------ES--IRHAITKLS------HLHFVATE-----EYRQRVIQMGEDPDR 168 (365)
T ss_pred ----------------cCCCCch----------HH--HHHHHHHHH------hhccCCCH-----HHHHHHHHcCCCCCc
Confidence 0011110 00 111111111 11122221 111111 1111 256
Q ss_pred eEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcc--c-CCHHHHHHHHHHHHhCCCCeEEEE
Q 039701 239 VWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLC--D-CSTRQLIELGLGLEATKKPFIWVI 315 (476)
Q Consensus 239 v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~--~-~~~~~~~~i~~a~~~~~~~~i~~~ 315 (476)
++.+|-...+.-.... . ...+++.+.+.-.++++.|++++=... . ...+.+..+++++.+.+.++++..
T Consensus 169 i~~tG~~~iD~l~~~~-----~---~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~ 240 (365)
T TIGR03568 169 VFNVGSPGLDNILSLD-----L---LSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTY 240 (365)
T ss_pred EEEECCcHHHHHHhhh-----c---cCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEE
Confidence 7777833222110000 0 011223333321223357777775433 2 346788899999988776666665
Q ss_pred cCCCC-C---chhHHHHhc-CCCeEeecccc---HHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHH
Q 039701 316 RPGDQ-A---FEKFEERIE-GRGLLIRGWAP---QVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEK 387 (476)
Q Consensus 316 ~~~~~-~---~~~~~~~~~-~~nv~~~~~vp---q~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~ 387 (476)
..... . .+.+..... .+|+.+.+-++ ...++.++++ +|+.++.|- .||.+.|+|.|.+- +
T Consensus 241 P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~------ 308 (365)
T TIGR03568 241 PNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---T------ 308 (365)
T ss_pred eCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---C------
Confidence 33221 0 112222222 46888887655 4568889999 998875555 99999999999763 2
Q ss_pred HHHHhhcceEE-eccCCCCCCcccccCCcccchhHHHHHHHHHhc
Q 039701 388 LVVQVLRIGVT-IGAERPPSLADEERNGVPVKKEDVKKAINMLMD 431 (476)
Q Consensus 388 ~v~e~~g~G~~-l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~ 431 (476)
|- |-...|.. +.-. .++++|.+++.++++
T Consensus 309 R~-e~~~~g~nvl~vg--------------~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 309 RQ-KGRLRADSVIDVD--------------PDKEEIVKAIEKLLD 338 (365)
T ss_pred Cc-hhhhhcCeEEEeC--------------CCHHHHHHHHHHHhC
Confidence 22 22222322 1122 578999999999654
No 93
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.46 E-value=0.00017 Score=72.35 Aligned_cols=97 Identities=23% Similarity=0.117 Sum_probs=61.5
Q ss_pred CCCeEeeccccHH---HhhhCCCceeeeccc---Ch-hhHHHHHHcCCCEecccccccchhhHHHHHH---hhcceEEec
Q 039701 331 GRGLLIRGWAPQV---VILSHPAIGGFLTHC---GW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQ---VLRIGVTIG 400 (476)
Q Consensus 331 ~~nv~~~~~vpq~---~ll~~~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e---~~g~G~~l~ 400 (476)
.++|.+.+++|+. .+|..+++ +|+-. |. .++.||+++|+|.|+.-..+.- ...+ + .-..|..
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv-~~~~~g~~G~l-- 375 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIV-VPWDGGPTGFL-- 375 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hhee-eccCCCCceEE--
Confidence 4789999999866 47888888 66421 22 4889999999999986543211 1112 2 2334543
Q ss_pred cCCCCCCcccccCCcccchhHHHHHHHHHhcCChh-hHHHHHHHHHHHHHH
Q 039701 401 AERPPSLADEERNGVPVKKEDVKKAINMLMDEGEE-RDERRRRAREYGETA 450 (476)
Q Consensus 401 ~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~-~~~~r~~a~~l~~~~ 450 (476)
- -++++++++|.++++++++ .+.+++++++..+.+
T Consensus 376 -~--------------~d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~f 411 (419)
T cd03806 376 -A--------------STAEEYAEAIEKILSLSEEERLRIRRAARSSVKRF 411 (419)
T ss_pred -e--------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh
Confidence 2 2688999999999987642 233444444444443
No 94
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.42 E-value=1.3e-06 Score=84.84 Aligned_cols=253 Identities=14% Similarity=0.125 Sum_probs=126.5
Q ss_pred HHHHHHchHHHHHHHHhcCCCCeEEE--ecCCC-chhHHHHhHcCCCcEEEecchHHHHHHHhhhhccccCCCCCCCCcc
Q 039701 99 FAAIEMLRLPLETLFKEIQPKPGCLI--SDVCL-PWTVSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHESVSSDSEY 175 (476)
Q Consensus 99 ~~~~~~~~~~l~~~l~~~~~~~D~vI--~D~~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (476)
..........+.+++++ .+||+|| .|-+. .+++.+|..++||++-+....=..
T Consensus 49 ~~~~~~~~~~~~~~~~~--~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~---------------------- 104 (346)
T PF02350_consen 49 AKSTGLAIIELADVLER--EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSG---------------------- 104 (346)
T ss_dssp HHHHHHHHHHHHHHHHH--HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S----------------------
T ss_pred HHHHHHHHHHHHHHHHh--cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCcc----------------------
Confidence 34444456677777777 7999877 45544 577999999999987643221000
Q ss_pred cccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHh-c-cCCceEEeCcccCCCCCcc
Q 039701 176 FLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKN-A-RDGKVWCVGPVSLCNKEDM 253 (476)
Q Consensus 176 ~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~-~~~~v~~vGpl~~~~~~~~ 253 (476)
...-|++ .+..+.... .-++..+..+-. +...+.. - -+.+++.+|....+.-...
T Consensus 105 d~~~g~~----------------de~~R~~i~--~la~lhf~~t~~-----~~~~L~~~G~~~~rI~~vG~~~~D~l~~~ 161 (346)
T PF02350_consen 105 DRTEGMP----------------DEINRHAID--KLAHLHFAPTEE-----ARERLLQEGEPPERIFVVGNPGIDALLQN 161 (346)
T ss_dssp -TTSSTT----------------HHHHHHHHH--HH-SEEEESSHH-----HHHHHHHTT--GGGEEE---HHHHHHHHH
T ss_pred ccCCCCc----------------hhhhhhhhh--hhhhhhccCCHH-----HHHHHHhcCCCCCeEEEEChHHHHHHHHh
Confidence 0001222 122222222 124455555532 1122211 1 1368888995433321110
Q ss_pred cccccCCCCCCCcccc--cccccCCCCCceEEEecCCcccCC-H---HHHHHHHHHHHhC-CCCeEEEEcCCCCCchhHH
Q 039701 254 DKLERGDKTSNDGSGC--LKWLDSWQPGSAVYVCLGSLCDCS-T---RQLIELGLGLEAT-KKPFIWVIRPGDQAFEKFE 326 (476)
Q Consensus 254 ~~~~~~~~~~~~~~~l--~~~l~~~~~~~vv~vs~GS~~~~~-~---~~~~~i~~a~~~~-~~~~i~~~~~~~~~~~~~~ 326 (476)
. .. ..++. ..++.. ..++.+++++=...... + ..+..+++++.+. +.++||...+.......+.
T Consensus 162 ~----~~----~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~ 232 (346)
T PF02350_consen 162 K----EE----IEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIII 232 (346)
T ss_dssp H----HT----TCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHH
T ss_pred H----HH----HhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHH
Confidence 0 00 01111 122222 45668999885444444 3 4455567777665 7889999875542112222
Q ss_pred HHhc-CCCeEeecccc---HHHhhhCCCceeeecccChhhHH-HHHHcCCCEecccccccchhhHHHHHHhhcceEEecc
Q 039701 327 ERIE-GRGLLIRGWAP---QVVILSHPAIGGFLTHCGWNSVL-EAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGA 401 (476)
Q Consensus 327 ~~~~-~~nv~~~~~vp---q~~ll~~~~~~~~I~HgG~~s~~-eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~ 401 (476)
+.+. -+|+.+..-++ ...+|.++++ +|+..| ++. ||.++|+|.|.+ -|+..+-.-+ ..|..+. -
T Consensus 233 ~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r--~~~~nvl--v 301 (346)
T PF02350_consen 233 EKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGR--ERGSNVL--V 301 (346)
T ss_dssp HHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHH--HTTSEEE--E
T ss_pred HHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHH--hhcceEE--e
Confidence 2221 14888887665 4568899999 999999 666 999999999999 2222222212 2233333 2
Q ss_pred CCCCCCcccccCCcccchhHHHHHHHHHhcC
Q 039701 402 ERPPSLADEERNGVPVKKEDVKKAINMLMDE 432 (476)
Q Consensus 402 ~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 432 (476)
. .+.++|.++|++++++
T Consensus 302 ~--------------~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 302 G--------------TDPEAIIQAIEKALSD 318 (346)
T ss_dssp T--------------SSHHHHHHHHHHHHH-
T ss_pred C--------------CCHHHHHHHHHHHHhC
Confidence 2 6899999999999974
No 95
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.41 E-value=6e-05 Score=73.20 Aligned_cols=209 Identities=20% Similarity=0.182 Sum_probs=112.4
Q ss_pred hhcCHHHHHHHHhccCCceEEeC-cccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHH
Q 039701 221 EELEPAYVEEYKNARDGKVWCVG-PVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIE 299 (476)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~ 299 (476)
..+|++++.. .+-++.||| |+........ .+....+.+ -.+++++|.+--||-.+-=...+..
T Consensus 141 fPFE~~~y~~----~g~~~~~VGHPl~d~~~~~~-----------~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~ 204 (373)
T PF02684_consen 141 FPFEPEFYKK----HGVPVTYVGHPLLDEVKPEP-----------DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPI 204 (373)
T ss_pred CcccHHHHhc----cCCCeEEECCcchhhhccCC-----------CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHH
Confidence 3455554433 347899999 8765432211 012222333 2234568999899865421233344
Q ss_pred HHHHHHh-----CCCCeEEEEcCCCCCchhHHHHh--cCCCeEeecc-ccHHHhhhCCCceeeecccChhhHHHHHHcCC
Q 039701 300 LGLGLEA-----TKKPFIWVIRPGDQAFEKFEERI--EGRGLLIRGW-APQVVILSHPAIGGFLTHCGWNSVLEAVSNGL 371 (476)
Q Consensus 300 i~~a~~~-----~~~~~i~~~~~~~~~~~~~~~~~--~~~nv~~~~~-vpq~~ll~~~~~~~~I~HgG~~s~~eal~~Gv 371 (476)
++++.+. .+.++++...+... .+.+.... .+.++.+.-. -.-.++|..+++ .+.-.|- .|.|+...|+
T Consensus 205 ~l~aa~~l~~~~p~l~fvvp~a~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~ 280 (373)
T PF02684_consen 205 FLEAAKLLKKQRPDLQFVVPVAPEVH-EELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGV 280 (373)
T ss_pred HHHHHHHHHHhCCCeEEEEecCCHHH-HHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCC
Confidence 5555442 35666666544331 11111111 1233333222 234468888888 7777763 5789999999
Q ss_pred CEecccc-cccchhhHHHHHHhhcceEEe-----ccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 039701 372 PMVTWPF-FADQFCNEKLVVQVLRIGVTI-----GAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRARE 445 (476)
Q Consensus 372 P~l~~P~-~~DQ~~~a~~v~e~~g~G~~l-----~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~ 445 (476)
|||++=- ..=....|+++. +... ..+ +..-.+++-+ +..|++.|.+++..+++|++ .++..+.
T Consensus 281 P~Vv~Yk~~~lt~~iak~lv-k~~~-isL~Niia~~~v~PEliQ-----~~~~~~~i~~~~~~ll~~~~----~~~~~~~ 349 (373)
T PF02684_consen 281 PMVVAYKVSPLTYFIAKRLV-KVKY-ISLPNIIAGREVVPELIQ-----EDATPENIAAELLELLENPE----KRKKQKE 349 (373)
T ss_pred CEEEEEcCcHHHHHHHHHhh-cCCE-eechhhhcCCCcchhhhc-----ccCCHHHHHHHHHHHhcCHH----HHHHHHH
Confidence 9998633 223455677665 4332 111 1111122222 26899999999999999884 4555555
Q ss_pred HHHHHHHHHhhCCCh
Q 039701 446 YGETAKTAIEEGGSS 460 (476)
Q Consensus 446 l~~~~~~~~~~gg~~ 460 (476)
..+.+++....|.++
T Consensus 350 ~~~~~~~~~~~~~~~ 364 (373)
T PF02684_consen 350 LFREIRQLLGPGASS 364 (373)
T ss_pred HHHHHHHhhhhccCC
Confidence 555555544444443
No 96
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.39 E-value=0.00037 Score=69.75 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=72.8
Q ss_pred EecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCchhHHHHhcC---CCeEeeccccHHHhhhCCCceeee
Q 039701 284 VCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAFEKFEERIEG---RGLLIRGWAPQVVILSHPAIGGFL 355 (476)
Q Consensus 284 vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~---~nv~~~~~vpq~~ll~~~~~~~~I 355 (476)
+..|-.. ..+.+..+++|++.. +.+ ++.+|.+.. .+.+...... ...++.++.+..+++...++ ||
T Consensus 232 l~vGRL~--~eK~~~~Li~a~~~l~~~~~~~~-l~ivGdGp~-~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~Dv--Fv 305 (462)
T PLN02846 232 YYIGKMV--WSKGYKELLKLLHKHQKELSGLE-VDLYGSGED-SDEVKAAAEKLELDVRVYPGRDHADPLFHDYKV--FL 305 (462)
T ss_pred EEEecCc--ccCCHHHHHHHHHHHHhhCCCeE-EEEECCCcc-HHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCE--EE
Confidence 3345443 355666777776642 333 444555432 2334433322 12245667677779998888 88
Q ss_pred cccC----hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhc
Q 039701 356 THCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMD 431 (476)
Q Consensus 356 ~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~ 431 (476)
.=+- -+++.||+++|+|+|+.-... + ..+ ++-+-|... . +.+++.+++.++|+
T Consensus 306 ~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~--~---------------~~~~~a~ai~~~l~ 362 (462)
T PLN02846 306 NPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY--D---------------DGKGFVRATLKALA 362 (462)
T ss_pred ECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec--C---------------CHHHHHHHHHHHHc
Confidence 7743 468899999999999976543 2 333 232333222 2 57789999999997
Q ss_pred CC
Q 039701 432 EG 433 (476)
Q Consensus 432 ~~ 433 (476)
++
T Consensus 363 ~~ 364 (462)
T PLN02846 363 EE 364 (462)
T ss_pred cC
Confidence 53
No 97
>PLN02275 transferase, transferring glycosyl groups
Probab=98.37 E-value=0.0015 Score=64.43 Aligned_cols=75 Identities=19% Similarity=0.340 Sum_probs=51.4
Q ss_pred CCeEeec-cccHHH---hhhCCCceeeec-c-----cC-hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEec
Q 039701 332 RGLLIRG-WAPQVV---ILSHPAIGGFLT-H-----CG-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIG 400 (476)
Q Consensus 332 ~nv~~~~-~vpq~~---ll~~~~~~~~I~-H-----gG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~ 400 (476)
+|+.+.. |+|+.+ +|+.+++ +|. + -| -+++.||+++|+|+|+... ......+ +.-+.|...
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv- 357 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLF- 357 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEE-
Confidence 4566655 788654 5889998 763 1 12 3579999999999999653 3355566 465677664
Q ss_pred cCCCCCCcccccCCcccchhHHHHHHHHHh
Q 039701 401 AERPPSLADEERNGVPVKKEDVKKAINMLM 430 (476)
Q Consensus 401 ~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll 430 (476)
. +.++|.++|.+++
T Consensus 358 -~---------------~~~~la~~i~~l~ 371 (371)
T PLN02275 358 -S---------------SSSELADQLLELL 371 (371)
T ss_pred -C---------------CHHHHHHHHHHhC
Confidence 2 3678888888764
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=0.002 Score=67.99 Aligned_cols=143 Identities=22% Similarity=0.227 Sum_probs=85.9
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHh-----CCCCeEEEEcCCCCCchhHHHHh----cCCCeEeeccccHH-HhhhCCC
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEA-----TKKPFIWVIRPGDQAFEKFEERI----EGRGLLIRGWAPQV-VILSHPA 350 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~-----~~~~~i~~~~~~~~~~~~~~~~~----~~~nv~~~~~vpq~-~ll~~~~ 350 (476)
.+++..|.+. ..+....+++|+.. .+.++ +.++.+.. .+.+.+.+ ..++|.+.+|.++. .++..++
T Consensus 518 ~vIg~VGRL~--~~KG~~~LI~A~a~l~~~~p~~~L-vIvG~G~~-~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaD 593 (694)
T PRK15179 518 FTVGTVMRVD--DNKRPFLWVEAAQRFAASHPKVRF-IMVGGGPL-LESVREFAQRLGMGERILFTGLSRRVGYWLTQFN 593 (694)
T ss_pred eEEEEEEeCC--ccCCHHHHHHHHHHHHHHCcCeEE-EEEccCcc-hHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcC
Confidence 3444556543 23444555565542 23454 44444332 22333322 24789999998854 5898898
Q ss_pred ceeeec---ccCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHH
Q 039701 351 IGGFLT---HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAI 426 (476)
Q Consensus 351 ~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i 426 (476)
+ +|. +.|. +++.||+++|+|+|+.... .....+ +.-.-|..++.. ..+.+++.+++
T Consensus 594 v--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~-------------d~~~~~La~aL 653 (694)
T PRK15179 594 A--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPAD-------------TVTAPDVAEAL 653 (694)
T ss_pred E--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCC-------------CCChHHHHHHH
Confidence 8 665 4554 6889999999999997653 344456 354467777665 35666777777
Q ss_pred HHHhcCChhhHHHHHHHHHHH
Q 039701 427 NMLMDEGEERDERRRRAREYG 447 (476)
Q Consensus 427 ~~ll~~~~~~~~~r~~a~~l~ 447 (476)
.+++.+......+++++++..
T Consensus 654 ~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 654 ARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred HHHHhChhccHHHHHHHHHHH
Confidence 776654322236666655544
No 99
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.36 E-value=0.00055 Score=67.65 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=71.7
Q ss_pred CCCeEeeccc--cHH---HhhhCCCceeeeccc---C-hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEecc
Q 039701 331 GRGLLIRGWA--PQV---VILSHPAIGGFLTHC---G-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGA 401 (476)
Q Consensus 331 ~~nv~~~~~v--pq~---~ll~~~~~~~~I~Hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~ 401 (476)
.+++.+.++. ++. .+++.+++ ++.-. | -.++.||+++|+|+|+.... .....+ +.-..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC-
Confidence 4578777776 432 47888888 77543 2 34899999999999987543 333445 3545565432
Q ss_pred CCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 039701 402 ERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 402 ~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~ 473 (476)
+.+++..+|.++++|++..+.+.+++++.... .-+-...++++++.+++
T Consensus 323 ----------------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~-------~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 ----------------TVEEAAVRILYLLRDPELRRKMGANAREHVRE-------NFLITRHLKDYLYLISK 371 (372)
T ss_pred ----------------CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHHh
Confidence 34567789999998876666777777665422 22333666666665543
No 100
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.30 E-value=0.0036 Score=66.39 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=60.9
Q ss_pred CCCeEeeccc-c---HHHhhhC----CCceeeec---ccCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEE
Q 039701 331 GRGLLIRGWA-P---QVVILSH----PAIGGFLT---HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVT 398 (476)
Q Consensus 331 ~~nv~~~~~v-p---q~~ll~~----~~~~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~ 398 (476)
.++|.+.++. + ..+++.+ +++ ||. .=|. .++.||+++|+|+|+.-. ......+ +.-.-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV-~dg~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEII-QDGVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEE
Confidence 4678877764 3 2245542 234 664 2333 489999999999998544 3456667 46566877
Q ss_pred eccCCCCCCcccccCCcccchhHHHHHHHHHh----cCChhhHHHHHHHHH
Q 039701 399 IGAERPPSLADEERNGVPVKKEDVKKAINMLM----DEGEERDERRRRARE 445 (476)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll----~~~~~~~~~r~~a~~ 445 (476)
++.. ++++++++|.+++ +|++..+.+.+++++
T Consensus 691 Vdp~---------------D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~ 726 (784)
T TIGR02470 691 IDPY---------------HGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQ 726 (784)
T ss_pred eCCC---------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7665 6788888888765 577666666666544
No 101
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.28 E-value=3.8e-06 Score=67.97 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=79.0
Q ss_pred eEEEecCCcccCC---HHHHHHHHHHHHhCCC-CeEEEEcCCCCC-chhHHHHhcCCC--eEeeccccH-HHhhhCCCce
Q 039701 281 AVYVCLGSLCDCS---TRQLIELGLGLEATKK-PFIWVIRPGDQA-FEKFEERIEGRG--LLIRGWAPQ-VVILSHPAIG 352 (476)
Q Consensus 281 vv~vs~GS~~~~~---~~~~~~i~~a~~~~~~-~~i~~~~~~~~~-~~~~~~~~~~~n--v~~~~~vpq-~~ll~~~~~~ 352 (476)
.+||+-||....+ .-.-.+.++.+.+.++ +.|...+.+... ++......+... +...+|-|- .+....+++
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Adl- 83 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADL- 83 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccE-
Confidence 6999999986311 1112345667777775 556667666322 333322112333 344556774 566767889
Q ss_pred eeecccChhhHHHHHHcCCCEecccc----cccchhhHHHHHHhhcceEEe
Q 039701 353 GFLTHCGWNSVLEAVSNGLPMVTWPF----FADQFCNEKLVVQVLRIGVTI 399 (476)
Q Consensus 353 ~~I~HgG~~s~~eal~~GvP~l~~P~----~~DQ~~~a~~v~e~~g~G~~l 399 (476)
+|.|+|+||++|.|..|+|.|+++. -..|-..|..++ +.|.=..=
T Consensus 84 -VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~C 132 (170)
T KOG3349|consen 84 -VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYYC 132 (170)
T ss_pred -EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEEe
Confidence 9999999999999999999999998 356899999995 77765443
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.23 E-value=0.0013 Score=67.09 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=72.7
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHh---CCCCeEEEEcCCCCCchhHHHHh--cCCCeE-eeccccH--HHhhhCCCce
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEA---TKKPFIWVIRPGDQAFEKFEERI--EGRGLL-IRGWAPQ--VVILSHPAIG 352 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~---~~~~~i~~~~~~~~~~~~~~~~~--~~~nv~-~~~~vpq--~~ll~~~~~~ 352 (476)
.+++..|.... .+.+..+++|++. .+.++++.-.+.....+.+.+.. .+.++. +.+|-.. ..++..+++
T Consensus 283 ~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv- 359 (466)
T PRK00654 283 PLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADM- 359 (466)
T ss_pred cEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCE-
Confidence 35556676643 3445555565543 35666665432211112222221 245554 3455332 257888888
Q ss_pred eeec---ccChh-hHHHHHHcCCCEecccccccchhhHHHHHHhh------cceEEeccCCCCCCcccccCCcccchhHH
Q 039701 353 GFLT---HCGWN-SVLEAVSNGLPMVTWPFFADQFCNEKLVVQVL------RIGVTIGAERPPSLADEERNGVPVKKEDV 422 (476)
Q Consensus 353 ~~I~---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~------g~G~~l~~~~~~~~~~~~~~~~~~t~~~l 422 (476)
+|. +-|.| +.+||+++|+|.|+....+ ....+ ... +-|...+.. ++++|
T Consensus 360 -~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG----~~e~v-~~~~~~~~~~~G~lv~~~---------------d~~~l 418 (466)
T PRK00654 360 -FLMPSRFEPCGLTQLYALRYGTLPIVRRTGG----LADTV-IDYNPEDGEATGFVFDDF---------------NAEDL 418 (466)
T ss_pred -EEeCCCCCCchHHHHHHHHCCCCEEEeCCCC----cccee-ecCCCCCCCCceEEeCCC---------------CHHHH
Confidence 774 34544 7889999999999865422 22222 122 567666544 78999
Q ss_pred HHHHHHHhc
Q 039701 423 KKAINMLMD 431 (476)
Q Consensus 423 ~~~i~~ll~ 431 (476)
.++|.++++
T Consensus 419 a~~i~~~l~ 427 (466)
T PRK00654 419 LRALRRALE 427 (466)
T ss_pred HHHHHHHHH
Confidence 999999886
No 103
>PLN00142 sucrose synthase
Probab=98.15 E-value=0.0012 Score=69.98 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=59.3
Q ss_pred CCCeEeec----cccHHHhhh----CCCceeeec---ccChh-hHHHHHHcCCCEecccccccchhhHHHHHHhhcceEE
Q 039701 331 GRGLLIRG----WAPQVVILS----HPAIGGFLT---HCGWN-SVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVT 398 (476)
Q Consensus 331 ~~nv~~~~----~vpq~~ll~----~~~~~~~I~---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~ 398 (476)
.++|.+.+ .++..+++. .+++ ||. +-|.| ++.||+++|+|+|+... ......+ +.-.-|..
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV-~dG~tG~L 713 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEII-VDGVSGFH 713 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEE
Confidence 35666554 333344543 2345 664 34554 89999999999998644 3455566 46556877
Q ss_pred eccCCCCCCcccccCCcccchhHHHHHHHH----HhcCChhhHHHHHHHHHH
Q 039701 399 IGAERPPSLADEERNGVPVKKEDVKKAINM----LMDEGEERDERRRRAREY 446 (476)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~----ll~~~~~~~~~r~~a~~l 446 (476)
++.. ++++++++|.+ +++|++..+++.+++++-
T Consensus 714 V~P~---------------D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~r 750 (815)
T PLN00142 714 IDPY---------------HGDEAANKIADFFEKCKEDPSYWNKISDAGLQR 750 (815)
T ss_pred eCCC---------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 7665 56667776654 557887667777776443
No 104
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.11 E-value=0.00033 Score=69.15 Aligned_cols=148 Identities=16% Similarity=0.149 Sum_probs=93.2
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHh-----CCCCeEEEEcCCCCCchhHHHH----hcCCCeEeeccccHH-HhhhCCCc
Q 039701 282 VYVCLGSLCDCSTRQLIELGLGLEA-----TKKPFIWVIRPGDQAFEKFEER----IEGRGLLIRGWAPQV-VILSHPAI 351 (476)
Q Consensus 282 v~vs~GS~~~~~~~~~~~i~~a~~~-----~~~~~i~~~~~~~~~~~~~~~~----~~~~nv~~~~~vpq~-~ll~~~~~ 351 (476)
.++..|.... .+.+..+++++.. .+.++++...+.. ...+... -.++++.+.++.++. .++..+++
T Consensus 206 ~i~~vgrl~~--~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~ 281 (372)
T cd04949 206 KIITVARLAP--EKQLDQLIKAFAKVVKQVPDATLDIYGYGDE--EEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQL 281 (372)
T ss_pred eEEEEEccCc--ccCHHHHHHHHHHHHHhCCCcEEEEEEeCch--HHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhE
Confidence 4455666542 3344444454443 3455555443332 1122211 125678888877755 58989998
Q ss_pred eeeecc--cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHH
Q 039701 352 GGFLTH--CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINML 429 (476)
Q Consensus 352 ~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~l 429 (476)
-...++ |...++.||+++|+|+|+..... .....+ +.-..|..++. -+.+++.++|.++
T Consensus 282 ~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~---------------~d~~~la~~i~~l 342 (372)
T cd04949 282 SLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK---------------GDIEALAEAIIEL 342 (372)
T ss_pred EEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC---------------CcHHHHHHHHHHH
Confidence 444444 23468999999999999965432 133445 35566766644 3789999999999
Q ss_pred hcCChhhHHHHHHHHHHHHHHHH
Q 039701 430 MDEGEERDERRRRAREYGETAKT 452 (476)
Q Consensus 430 l~~~~~~~~~r~~a~~l~~~~~~ 452 (476)
++|++..+++.+++++.++++..
T Consensus 343 l~~~~~~~~~~~~a~~~~~~~s~ 365 (372)
T cd04949 343 LNDPKLLQKFSEAAYENAERYSE 365 (372)
T ss_pred HcCHHHHHHHHHHHHHHHHHhhH
Confidence 99987788888888887666553
No 105
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.06 E-value=0.00033 Score=66.75 Aligned_cols=222 Identities=18% Similarity=0.139 Sum_probs=121.3
Q ss_pred hhcCHHHHHHHHhccCCceEEeC-cccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHHHHH
Q 039701 221 EELEPAYVEEYKNARDGKVWCVG-PVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIE 299 (476)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~v~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~ 299 (476)
..+|+++++... -+..||| |+....+... +.+.+.+-+.-..+++++.+--||-.+-=...+..
T Consensus 144 lPFE~~~y~k~g----~~~~yVGHpl~d~i~~~~-----------~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~ 208 (381)
T COG0763 144 LPFEPAFYDKFG----LPCTYVGHPLADEIPLLP-----------DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPP 208 (381)
T ss_pred cCCCHHHHHhcC----CCeEEeCChhhhhccccc-----------cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHH
Confidence 345666655443 4488999 7765543211 13344555544455668999999976521222223
Q ss_pred HHHHHHh-----CCCCeEEEEcCCCCCchhHHHHhcCCCe-Eeecccc--HH-HhhhCCCceeeecccChhhHHHHHHcC
Q 039701 300 LGLGLEA-----TKKPFIWVIRPGDQAFEKFEERIEGRGL-LIRGWAP--QV-VILSHPAIGGFLTHCGWNSVLEAVSNG 370 (476)
Q Consensus 300 i~~a~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~nv-~~~~~vp--q~-~ll~~~~~~~~I~HgG~~s~~eal~~G 370 (476)
+.+|... .+.++++.+.+... +.........+. ...-++. +. .++..+++ .+.-+|- -+.|+..+|
T Consensus 209 f~~a~~~l~~~~~~~~~vlp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g 283 (381)
T COG0763 209 FVQAAQELKARYPDLKFVLPLVNAKY--RRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAG 283 (381)
T ss_pred HHHHHHHHHhhCCCceEEEecCcHHH--HHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhC
Confidence 4444432 35787777655431 111111111111 1222222 22 37777887 7777774 457999999
Q ss_pred CCEecccc-cccchhhHHHHHHhhcceEEec--cCC--CCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 039701 371 LPMVTWPF-FADQFCNEKLVVQVLRIGVTIG--AER--PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRARE 445 (476)
Q Consensus 371 vP~l~~P~-~~DQ~~~a~~v~e~~g~G~~l~--~~~--~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~ 445 (476)
+|||+.=- ..=-...+++.. +....--.+ .++ .++.- ....+++.|.+++..++.|++.+..+++...+
T Consensus 284 ~P~Vv~Yk~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEli-----q~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~ 357 (381)
T COG0763 284 TPMVVAYKVKPITYFIAKRLV-KLPYVSLPNILAGREIVPELI-----QEDCTPENLARALEELLLNGDRREALKEKFRE 357 (381)
T ss_pred CCEEEEEeccHHHHHHHHHhc-cCCcccchHHhcCCccchHHH-----hhhcCHHHHHHHHHHHhcChHhHHHHHHHHHH
Confidence 99997521 111234555554 333221110 000 01111 12588999999999999998555666666666
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHH
Q 039701 446 YGETAKTAIEEGGSSYLNIKLLIKDIL 472 (476)
Q Consensus 446 l~~~~~~~~~~gg~~~~~~~~~~~~i~ 472 (476)
|...++ +++++....+.+++.+.
T Consensus 358 l~~~l~----~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 358 LHQYLR----EDPASEIAAQAVLELLL 380 (381)
T ss_pred HHHHHc----CCcHHHHHHHHHHHHhc
Confidence 666544 45577777777776553
No 106
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.05 E-value=0.00015 Score=72.61 Aligned_cols=148 Identities=18% Similarity=0.198 Sum_probs=93.2
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCchhHHHHh----cCCCeEeeccccHHH---hhhC
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAFEKFEERI----EGRGLLIRGWAPQVV---ILSH 348 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~----~~~nv~~~~~vpq~~---ll~~ 348 (476)
..+++.|..... +.+..+++|+... +.++.|..-++....+.+.+.+ ...+|.+.+|+++.+ ++..
T Consensus 231 ~~il~~Grl~~~--Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~ 308 (407)
T cd04946 231 LRIVSCSYLVPV--KRVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKE 308 (407)
T ss_pred EEEEEeeccccc--cCHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhh
Confidence 455667776542 3344555555432 2456665433321122233222 245799999999764 4544
Q ss_pred CCceeeecccC----hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHH
Q 039701 349 PAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKK 424 (476)
Q Consensus 349 ~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~ 424 (476)
+++.++|...- -++++||+++|+|+|+... ......+ +..+.|..+... -+.+++.+
T Consensus 309 ~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i-~~~~~G~l~~~~--------------~~~~~la~ 369 (407)
T cd04946 309 NPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIV-DNGGNGLLLSKD--------------PTPNELVS 369 (407)
T ss_pred cCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHh-cCCCcEEEeCCC--------------CCHHHHHH
Confidence 44434776543 3689999999999998553 4456666 465578766543 57899999
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHH
Q 039701 425 AINMLMDEGEERDERRRRAREYGET 449 (476)
Q Consensus 425 ~i~~ll~~~~~~~~~r~~a~~l~~~ 449 (476)
+|.++++|++..++++++|++..++
T Consensus 370 ~I~~ll~~~~~~~~m~~~ar~~~~~ 394 (407)
T cd04946 370 SLSKFIDNEEEYQTMREKAREKWEE 394 (407)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 9999999887777777777666543
No 107
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.03 E-value=0.0002 Score=71.57 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=99.6
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCchhHHHHh----cCCCeEeeccccHHH---hhhC
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAFEKFEERI----EGRGLLIRGWAPQVV---ILSH 348 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~----~~~nv~~~~~vpq~~---ll~~ 348 (476)
+.+++.|.... .+.+..+++|++.. +.++++. +.+.. .+.+...+ ..++|.+.+|+|+.+ ++..
T Consensus 223 ~~il~vGrl~~--~Kg~~~ll~a~~~l~~~~~~~~l~iv-G~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~ 298 (406)
T PRK15427 223 LEIISVARLTE--KKGLHVAIEACRQLKEQGVAFRYRIL-GIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD 298 (406)
T ss_pred eEEEEEeCcch--hcCHHHHHHHHHHHHhhCCCEEEEEE-ECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh
Confidence 44556676653 34455566665532 2344443 33321 22333322 246899999999764 7888
Q ss_pred CCceeeecc---------cCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccc
Q 039701 349 PAIGGFLTH---------CGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVK 418 (476)
Q Consensus 349 ~~~~~~I~H---------gG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t 418 (476)
+++ +|.- -|. ++++||+++|+|+|+.... .....+ +.-..|...+.. +
T Consensus 299 aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~lv~~~---------------d 356 (406)
T PRK15427 299 ADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGWLVPEN---------------D 356 (406)
T ss_pred CCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceEEeCCC---------------C
Confidence 888 6642 344 5789999999999997543 344455 355567666443 7
Q ss_pred hhHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 039701 419 KEDVKKAINMLMD-EGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 419 ~~~l~~~i~~ll~-~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~ 473 (476)
.+++.++|.++++ |++..+++.+++++..+. --+.....+++.+.+++
T Consensus 357 ~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~-------~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 357 AQALAQRLAAFSQLDTDELAPVVKRAREKVET-------DFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHhh
Confidence 8999999999998 886666677776655433 23333666666665544
No 108
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.03 E-value=0.0037 Score=64.02 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=100.5
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCchhHHHHhc----CCCeEeeccccHHHhhhCCCc
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEAT-----KKPFIWVIRPGDQAFEKFEERIE----GRGLLIRGWAPQVVILSHPAI 351 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~----~~nv~~~~~vpq~~ll~~~~~ 351 (476)
.+.++.|... ..+.+..+++|+... +.++ ..+|.+.. .+.+.+.+. .++|.+.++.+...++..+++
T Consensus 320 ~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l-~i~G~G~~-~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~adv 395 (500)
T TIGR02918 320 FSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTF-DIYGEGGE-KQKLQKIINENQAQDYIHLKGHRNLSEVYKDYEL 395 (500)
T ss_pred eEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEE-EEEECchh-HHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCCE
Confidence 3455667765 345566666766532 3333 33444332 233433322 467889999988899999998
Q ss_pred eeeec---ccCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccc-hhHHHHHH
Q 039701 352 GGFLT---HCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVK-KEDVKKAI 426 (476)
Q Consensus 352 ~~~I~---HgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t-~~~l~~~i 426 (476)
+|. .-|. .++.||+++|+|+|+.-... .....+ +.-.-|..++... ++ +..-+ .++|+++|
T Consensus 396 --~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~------~~--~d~~~~~~~la~~I 461 (500)
T TIGR02918 396 --YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDE------EE--DDEDQIITALAEKI 461 (500)
T ss_pred --EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCc------cc--cchhHHHHHHHHHH
Confidence 775 3343 58999999999999976531 233344 3444566554220 00 00012 78899999
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 039701 427 NMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 427 ~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~ 473 (476)
.++++ ++..+.+.+++++.++.+... ..++...+.+++
T Consensus 462 ~~ll~-~~~~~~~~~~a~~~a~~fs~~--------~v~~~w~~ll~~ 499 (500)
T TIGR02918 462 VEYFN-SNDIDAFHEYSYQIAEGFLTA--------NIIEKWKKLVRE 499 (500)
T ss_pred HHHhC-hHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhh
Confidence 99995 556777888888776665544 555555555443
No 109
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.02 E-value=3.3e-05 Score=67.11 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=90.6
Q ss_pred CceEEEecCCcccCCHHHHHHHHHHHHhC----CCC-eEEEEcCCCCCchhHHH----HhcCCCeEeeccccH---HHhh
Q 039701 279 GSAVYVCLGSLCDCSTRQLIELGLGLEAT----KKP-FIWVIRPGDQAFEKFEE----RIEGRGLLIRGWAPQ---VVIL 346 (476)
Q Consensus 279 ~~vv~vs~GS~~~~~~~~~~~i~~a~~~~----~~~-~i~~~~~~~~~~~~~~~----~~~~~nv~~~~~vpq---~~ll 346 (476)
++.+++..|+... .+.+..+++++... ... .++.++.... ...+.. .....++.+.+++++ ..++
T Consensus 14 ~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 90 (172)
T PF00534_consen 14 KKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEY-KKELKNLIEKLNLKENIIFLGYVPDDELDELY 90 (172)
T ss_dssp TSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHCCH-HHHHHHHHHHTTCGTTEEEEESHSHHHHHHHH
T ss_pred CCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEccccc-cccccccccccccccccccccccccccccccc
Confidence 3456667777654 24445555555432 223 3334442211 111111 123578999999982 3588
Q ss_pred hCCCceeeecc----cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHH
Q 039701 347 SHPAIGGFLTH----CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDV 422 (476)
Q Consensus 347 ~~~~~~~~I~H----gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l 422 (476)
..+++ +|+. |..+++.||+++|+|+|+. |...+...+ +....|...+. -+.+++
T Consensus 91 ~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~---------------~~~~~l 148 (172)
T PF00534_consen 91 KSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDP---------------NDIEEL 148 (172)
T ss_dssp HHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEEST---------------TSHHHH
T ss_pred cccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCC---------------CCHHHH
Confidence 88998 8877 5567999999999999974 456666666 46666877644 389999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHH
Q 039701 423 KKAINMLMDEGEERDERRRRARE 445 (476)
Q Consensus 423 ~~~i~~ll~~~~~~~~~r~~a~~ 445 (476)
.++|.++++|++..+.+.+++++
T Consensus 149 ~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 149 ADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHhcC
Confidence 99999999988777777777765
No 110
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.93 E-value=0.0002 Score=71.00 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=85.9
Q ss_pred CCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHH-----hcCCCeEeeccccHHH---hhhC
Q 039701 277 QPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEER-----IEGRGLLIRGWAPQVV---ILSH 348 (476)
Q Consensus 277 ~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~nv~~~~~vpq~~---ll~~ 348 (476)
++..++|.+|.+....+++.+..-.+.+++.+...+|.........+.+..+ +.++.+.+.++.++.+ .+..
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~ 361 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQL 361 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhh
Confidence 3455999999999989999999989999999988899876654322222222 3467888888877554 4445
Q ss_pred CCceeee---cccChhhHHHHHHcCCCEecccccccchhh-HHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHH
Q 039701 349 PAIGGFL---THCGWNSVLEAVSNGLPMVTWPFFADQFCN-EKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKK 424 (476)
Q Consensus 349 ~~~~~~I---~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~-a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~ 424 (476)
+++ +. ..+|.+|++|||+.|||+|++|--.=.-.. +..+ ..+|+...+ .-+.++-.+
T Consensus 362 ~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElI----------------A~s~~eYv~ 422 (468)
T PF13844_consen 362 ADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELI----------------ADSEEEYVE 422 (468)
T ss_dssp -SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB-----------------SSHHHHHH
T ss_pred CCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhc----------------CCCHHHHHH
Confidence 665 43 578999999999999999999975433333 3455 577777543 235556444
Q ss_pred HHHHHhcCChhhHHHHHHHH
Q 039701 425 AINMLMDEGEERDERRRRAR 444 (476)
Q Consensus 425 ~i~~ll~~~~~~~~~r~~a~ 444 (476)
.--++-+|+++.+.+|++.+
T Consensus 423 ~Av~La~D~~~l~~lR~~Lr 442 (468)
T PF13844_consen 423 IAVRLATDPERLRALRAKLR 442 (468)
T ss_dssp HHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 44455567755555555544
No 111
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.92 E-value=0.018 Score=58.93 Aligned_cols=127 Identities=10% Similarity=-0.014 Sum_probs=73.8
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHh---CCCCeEEEEcCCCCCchhHHHHh--cCCCeEeeccccHH---HhhhCCCce
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEA---TKKPFIWVIRPGDQAFEKFEERI--EGRGLLIRGWAPQV---VILSHPAIG 352 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~---~~~~~i~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~---~ll~~~~~~ 352 (476)
.+++..|.... .+.+..+++|++. .+.++++.-.+.....+.+.+.. .+.++.+....+.. .++..+++
T Consensus 292 ~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv- 368 (473)
T TIGR02095 292 PLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADF- 368 (473)
T ss_pred CEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCE-
Confidence 35556676653 3334445555543 35565555433211112222211 35667766555543 47888888
Q ss_pred eeecc---cChh-hHHHHHHcCCCEecccccccchhhHHHHHHhh------cceEEeccCCCCCCcccccCCcccchhHH
Q 039701 353 GFLTH---CGWN-SVLEAVSNGLPMVTWPFFADQFCNEKLVVQVL------RIGVTIGAERPPSLADEERNGVPVKKEDV 422 (476)
Q Consensus 353 ~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~------g~G~~l~~~~~~~~~~~~~~~~~~t~~~l 422 (476)
++.= -|.| +.+||+++|+|.|+....+ ....+ +.. +.|...+. -++++|
T Consensus 369 -~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~~~---------------~d~~~l 427 (473)
T TIGR02095 369 -ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLFEE---------------YDPGAL 427 (473)
T ss_pred -EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEeCC---------------CCHHHH
Confidence 7642 2444 7889999999999865532 22233 232 66766644 478899
Q ss_pred HHHHHHHhc
Q 039701 423 KKAINMLMD 431 (476)
Q Consensus 423 ~~~i~~ll~ 431 (476)
.++|.++++
T Consensus 428 a~~i~~~l~ 436 (473)
T TIGR02095 428 LAALSRALR 436 (473)
T ss_pred HHHHHHHHH
Confidence 999999886
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.91 E-value=0.01 Score=60.77 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=71.0
Q ss_pred CCCeEeeccccHHHhhhCCCceeeeccc----ChhhHHHHHHcCCCEecccccccchhhHHHHHHhh------cceEEec
Q 039701 331 GRGLLIRGWAPQVVILSHPAIGGFLTHC----GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVL------RIGVTIG 400 (476)
Q Consensus 331 ~~nv~~~~~vpq~~ll~~~~~~~~I~Hg----G~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~------g~G~~l~ 400 (476)
.+||.+.+...-..++..+++ +|.-. --+++.||+++|+|+|+. |.......+ +.. ..|...+
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC
Confidence 578999987667789998888 66442 346899999999999994 444455555 352 2566654
Q ss_pred cCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 039701 401 AERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGET 449 (476)
Q Consensus 401 ~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~ 449 (476)
. -+.+++.++|.++++|++..+.+.+++++..++
T Consensus 426 ~---------------~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~ 459 (475)
T cd03813 426 P---------------ADPEALARAILRLLKDPELRRAMGEAGRKRVER 459 (475)
T ss_pred C---------------CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4 478999999999999987777777777654443
No 113
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.90 E-value=0.016 Score=59.23 Aligned_cols=129 Identities=11% Similarity=0.023 Sum_probs=72.3
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHh---CCCCeEEEEcCCCCCchhHHHHh--cCCCeEeeccccHH---HhhhCCCce
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEA---TKKPFIWVIRPGDQAFEKFEERI--EGRGLLIRGWAPQV---VILSHPAIG 352 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~---~~~~~i~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~---~ll~~~~~~ 352 (476)
.+++..|.... .+.+..++++++. .+.++++.-.+.....+.+.+.. .+.|+.+....++. .++..+++
T Consensus 297 ~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv- 373 (476)
T cd03791 297 PLFGFVGRLTE--QKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADF- 373 (476)
T ss_pred CEEEEEeeccc--cccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCE-
Confidence 35566676653 3344555555543 34555555433221112222221 15677754434433 47788888
Q ss_pred eeecc---cCh-hhHHHHHHcCCCEecccccccchhhHHHHH-----HhhcceEEeccCCCCCCcccccCCcccchhHHH
Q 039701 353 GFLTH---CGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVV-----QVLRIGVTIGAERPPSLADEERNGVPVKKEDVK 423 (476)
Q Consensus 353 ~~I~H---gG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~-----e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~ 423 (476)
++.- -|. .+.+||+++|+|.|+....+ ....+. .+-|-|...+.. ++++|.
T Consensus 374 -~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg----~~e~v~~~~~~~~~~~G~~~~~~---------------~~~~l~ 433 (476)
T cd03791 374 -FLMPSRFEPCGLTQMYAMRYGTVPIVRATGG----LADTVIDYNEDTGEGTGFVFEGY---------------NADALL 433 (476)
T ss_pred -EECCCCCCCCcHHHHHHhhCCCCCEECcCCC----ccceEeCCcCCCCCCCeEEeCCC---------------CHHHHH
Confidence 7643 222 47789999999999865532 222221 123367666543 689999
Q ss_pred HHHHHHhcC
Q 039701 424 KAINMLMDE 432 (476)
Q Consensus 424 ~~i~~ll~~ 432 (476)
++|.+++++
T Consensus 434 ~~i~~~l~~ 442 (476)
T cd03791 434 AALRRALAL 442 (476)
T ss_pred HHHHHHHHH
Confidence 999998853
No 114
>PLN02316 synthase/transferase
Probab=97.89 E-value=0.066 Score=58.71 Aligned_cols=163 Identities=10% Similarity=-0.037 Sum_probs=91.7
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHh---CCCCeEEEEcCCCCC-chhHHHHhc------CCCeEeeccccHH---HhhhC
Q 039701 282 VYVCLGSLCDCSTRQLIELGLGLEA---TKKPFIWVIRPGDQA-FEKFEERIE------GRGLLIRGWAPQV---VILSH 348 (476)
Q Consensus 282 v~vs~GS~~~~~~~~~~~i~~a~~~---~~~~~i~~~~~~~~~-~~~~~~~~~------~~nv~~~~~vpq~---~ll~~ 348 (476)
++...|-.. ..+.+..|++|+.. .+.++|+.-.+.+.. .+.+..... ++++.+....+.. .++..
T Consensus 842 lVg~VGRL~--~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaa 919 (1036)
T PLN02316 842 LVGIITRLT--HQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAG 919 (1036)
T ss_pred EEEEEeccc--cccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHh
Confidence 333345443 23445566666654 356665543322210 112222221 4567665554543 57888
Q ss_pred CCceeeeccc---Ch-hhHHHHHHcCCCEecccccccchhhHHHHHHh-------------hcceEEeccCCCCCCcccc
Q 039701 349 PAIGGFLTHC---GW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQV-------------LRIGVTIGAERPPSLADEE 411 (476)
Q Consensus 349 ~~~~~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~-------------~g~G~~l~~~~~~~~~~~~ 411 (476)
+++ |+.-. |. .+.+||+++|+|.|+.... .....| .. -+-|...+.
T Consensus 920 ADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vG----GL~DtV-~d~d~~~~~~~~~g~~~tGflf~~---------- 982 (1036)
T PLN02316 920 ADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTG----GLFDTV-FDVDHDKERAQAQGLEPNGFSFDG---------- 982 (1036)
T ss_pred CcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCC----CcHhhc-cccccccccccccccCCceEEeCC----------
Confidence 888 88532 32 4889999999998876442 222222 11 134555533
Q ss_pred cCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHh
Q 039701 412 RNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 474 (476)
Q Consensus 412 ~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~ 474 (476)
.+++.|..+|.+++. .|.+..+.++...++.+.+.-|-...++..++--++.
T Consensus 983 -----~d~~aLa~AL~raL~------~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a 1034 (1036)
T PLN02316 983 -----ADAAGVDYALNRAIS------AWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSA 1034 (1036)
T ss_pred -----CCHHHHHHHHHHHHh------hhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 488899999999996 3445555566666666655666556666555544443
No 115
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.85 E-value=0.02 Score=59.48 Aligned_cols=114 Identities=13% Similarity=0.021 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHhC-----CCCeEEEEcCCCCCchhHHHHhc--CCCeEeeccccHH-HhhhCCCceeeecc---cC-h
Q 039701 293 STRQLIELGLGLEAT-----KKPFIWVIRPGDQAFEKFEERIE--GRGLLIRGWAPQV-VILSHPAIGGFLTH---CG-W 360 (476)
Q Consensus 293 ~~~~~~~i~~a~~~~-----~~~~i~~~~~~~~~~~~~~~~~~--~~nv~~~~~vpq~-~ll~~~~~~~~I~H---gG-~ 360 (476)
..+.+..+++|++.. +.++ +.+|.+.. .+.+...+. .-++.+.++.++. .++..+++ ||.= =| -
T Consensus 557 ~EKGld~LLeAla~L~~~~pnvrL-vIVGDGP~-reeLe~la~eLgL~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFG 632 (794)
T PLN02501 557 WAKGYRELIDLLAKHKNELDGFNL-DVFGNGED-AHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKV--FINPSISDVLC 632 (794)
T ss_pred ccCCHHHHHHHHHHHHhhCCCeEE-EEEcCCcc-HHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCE--EEECCCcccch
Confidence 356667777777542 3343 34444432 223333222 2246677777765 48988888 8763 23 3
Q ss_pred hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC
Q 039701 361 NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG 433 (476)
Q Consensus 361 ~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~ 433 (476)
+++.||+++|+|+|+.-..+... + .. |.+..+ . -+.+++.++|.++|+|+
T Consensus 633 lVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll--~--------------~D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 633 TATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLT--Y--------------KTSEDFVAKVKEALANE 682 (794)
T ss_pred HHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEe--c--------------CCHHHHHHHHHHHHhCc
Confidence 68899999999999987764221 3 12 222222 1 26899999999999876
No 116
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.00021 Score=57.01 Aligned_cols=109 Identities=20% Similarity=0.227 Sum_probs=74.4
Q ss_pred EEEecCCcccCCHHHH--HHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcC-CCeEeecc--cc-HHHhhhCCCceeee
Q 039701 282 VYVCLGSLCDCSTRQL--IELGLGLEATKKPFIWVIRPGDQAFEKFEERIEG-RGLLIRGW--AP-QVVILSHPAIGGFL 355 (476)
Q Consensus 282 v~vs~GS~~~~~~~~~--~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~nv~~~~~--vp-q~~ll~~~~~~~~I 355 (476)
+|||-||....=...+ .+...-.+....++|+.+++++. +| ++..+.+| -+ -..+...+++ +|
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~---------kpvagl~v~~F~~~~kiQsli~darI--VI 70 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI---------KPVAGLRVYGFDKEEKIQSLIHDARI--VI 70 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc---------ccccccEEEeechHHHHHHHhhcceE--EE
Confidence 7899999853111111 11222223345688999988652 23 33344444 44 3456767777 99
Q ss_pred cccChhhHHHHHHcCCCEecccccc--------cchhhHHHHHHhhcceEEeccC
Q 039701 356 THCGWNSVLEAVSNGLPMVTWPFFA--------DQFCNEKLVVQVLRIGVTIGAE 402 (476)
Q Consensus 356 ~HgG~~s~~eal~~GvP~l~~P~~~--------DQ~~~a~~v~e~~g~G~~l~~~ 402 (476)
+|+|.||+..++..++|.+++|-.. .|-..|..++ +.++-....+-
T Consensus 71 SHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~spt 124 (161)
T COG5017 71 SHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSPT 124 (161)
T ss_pred eccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcCC
Confidence 9999999999999999999999854 5788999997 88877766544
No 117
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.81 E-value=0.043 Score=54.21 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=53.3
Q ss_pred CCCeEeeccccHHH---hhhCCCceeee------cccCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEec
Q 039701 331 GRGLLIRGWAPQVV---ILSHPAIGGFL------THCGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIG 400 (476)
Q Consensus 331 ~~nv~~~~~vpq~~---ll~~~~~~~~I------~HgG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~ 400 (476)
.+||.+.+++|+.+ .+..+++..+- +.++. +.+.|++++|+|+|+.++ ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 47999999998665 67788883321 22333 458999999999998763 2233 2333 33332
Q ss_pred cCCCCCCcccccCCcccchhHHHHHHHHHhcCC
Q 039701 401 AERPPSLADEERNGVPVKKEDVKKAINMLMDEG 433 (476)
Q Consensus 401 ~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~ 433 (476)
. -+.+++.++|.+++.++
T Consensus 324 ~---------------~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A---------------DDPEEFVAAIEKALLED 341 (373)
T ss_pred C---------------CCHHHHHHHHHHHHhcC
Confidence 2 27899999999987644
No 118
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.64 E-value=0.0017 Score=64.32 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=75.1
Q ss_pred CCCeEeeccccHH---HhhhCCCceeeecc----cCh-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccC
Q 039701 331 GRGLLIRGWAPQV---VILSHPAIGGFLTH----CGW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAE 402 (476)
Q Consensus 331 ~~nv~~~~~vpq~---~ll~~~~~~~~I~H----gG~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~ 402 (476)
..++.+.+++|+. .++..+++ +|.- .|. .++.||+++|+|+|+.... .+...+ +.-..|..+...
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLAEP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEeCC
Confidence 5688899999855 46888888 7753 343 5778999999999997653 344455 355567644322
Q ss_pred CCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 039701 403 RPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 403 ~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~ 473 (476)
.+.+++.++|.++++|++. .++.+++++ ...+--+-....+++.+.+++
T Consensus 329 --------------~d~~~la~~I~~ll~d~~~-~~~~~~ar~-------~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 329 --------------MTSDSIISDINRTLADPEL-TQIAEQAKD-------FVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred --------------CCHHHHHHHHHHHHcCHHH-HHHHHHHHH-------HHHHhCCHHHHHHHHHHHHHH
Confidence 4789999999999998632 333333333 222344444666666666654
No 119
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.58 E-value=0.064 Score=49.73 Aligned_cols=106 Identities=15% Similarity=0.073 Sum_probs=72.6
Q ss_pred CCCccChHHHHHHHHHHHHCCCeEEEEeCCc--chhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcC
Q 039701 16 FLAQGHMIPMIDIARLLAQHGALVTIVTTPM--NAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMA 93 (476)
Q Consensus 16 ~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~--~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (476)
..-.-|+.-|..|.++|.++||+|.+-+-.. ..+.++.+ ++.+..|.-. ...
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y---------gf~~~~Igk~-----------------g~~ 60 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY---------GFPYKSIGKH-----------------GGV 60 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh---------CCCeEeeccc-----------------CCc
Confidence 3455689999999999999999998776532 23333333 5666665411 001
Q ss_pred cHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecch
Q 039701 94 LLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFS 150 (476)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~ 150 (476)
.+...+.........|.+++.+ .+||+.+. -.++.+..+|--+|+|++.+.-..
T Consensus 61 tl~~Kl~~~~eR~~~L~ki~~~--~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 61 TLKEKLLESAERVYKLSKIIAE--FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred cHHHHHHHHHHHHHHHHHHHhh--cCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 2232333333445567778888 89999999 567889999999999999975554
No 120
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=0.054 Score=52.13 Aligned_cols=322 Identities=14% Similarity=0.117 Sum_probs=169.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCC-CeEEEEeCCcch--hhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHG-ALVTIVTTPMNA--ARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCE 84 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rG-H~Vt~~~~~~~~--~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~ 84 (476)
++||+++ +|++=.++-+.+|.+++.+.+ .+..++.|..-. +.....++.. +++. |..+ +.-
T Consensus 3 ~~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~-----~i~~-----pdy~--L~i--- 66 (383)
T COG0381 3 MLKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELF-----GIRK-----PDYD--LNI--- 66 (383)
T ss_pred ceEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHh-----CCCC-----CCcc--hhc---
Confidence 3455555 599999999999999999996 666666554333 5455554311 1211 1001 000
Q ss_pred CCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecC--CC-chhHHHHhHcCCCcEEEecchHHHHHHHhhhh
Q 039701 85 SWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDV--CL-PWTVSSACKFNVPRIVFHGFSCFCLLCLHSLS 161 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~--~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 161 (476)
.+....+.+........+.+++++ .+||+|++.. .. .+++.+|.+.+||+.-+-..-=
T Consensus 67 -------~~~~~tl~~~t~~~i~~~~~vl~~--~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlR---------- 127 (383)
T COG0381 67 -------MKPGQTLGEITGNIIEGLSKVLEE--EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLR---------- 127 (383)
T ss_pred -------cccCCCHHHHHHHHHHHHHHHHHh--hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccc----------
Confidence 011223444455566777888888 8999988544 43 5669999999999997522210
Q ss_pred ccccCCCCCCCCcccccCCCCCcccccccccchhhhHHHhHHHHHHhhccccEEEecchhhcCHHHHHHHHhccCC-ceE
Q 039701 162 VSKAHESVSSDSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILAAEMASYGVIVNSFEELEPAYVEEYKNARDG-KVW 240 (476)
Q Consensus 162 ~~~~~~~~~~~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~v~ 240 (476)
.-..+ +|. - ..+ +... .-++..+.++-.. .-...+.-.++ +++
T Consensus 128 -----------t~~~~---~PE-----------E--~NR---~l~~--~~S~~hfapte~a----r~nLl~EG~~~~~If 171 (383)
T COG0381 128 -----------TGDLY---FPE-----------E--INR---RLTS--HLSDLHFAPTEIA----RKNLLREGVPEKRIF 171 (383)
T ss_pred -----------cCCCC---CcH-----------H--HHH---HHHH--HhhhhhcCChHHH----HHHHHHcCCCccceE
Confidence 00011 111 0 000 0000 0111222222100 00011222333 466
Q ss_pred EeCcccCCCCCcccccccCCCCCCCccccccc-ccCCCCCceEEEecCCcccCCHHHHHHHHHHHH----hC-CCCeEEE
Q 039701 241 CVGPVSLCNKEDMDKLERGDKTSNDGSGCLKW-LDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLE----AT-KKPFIWV 314 (476)
Q Consensus 241 ~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~----~~-~~~~i~~ 314 (476)
-+|-...+.-... +.. ...+...... ++.. .+..|.+|+=-..+.. +.+..|++++. .. +..+|..
T Consensus 172 vtGnt~iDal~~~----~~~--~~~~~~~~~~~~~~~-~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp 243 (383)
T COG0381 172 VTGNTVIDALLNT----RDR--VLEDSKILAKGLDDK-DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYP 243 (383)
T ss_pred EeCChHHHHHHHH----Hhh--hccchhhHHhhhccc-cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEe
Confidence 6773222110000 000 0001111111 2222 2337877754333333 44555555443 33 4555555
Q ss_pred EcCCCCCchhHH-HHhc-CCCeEeec---cccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHH
Q 039701 315 IRPGDQAFEKFE-ERIE-GRGLLIRG---WAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLV 389 (476)
Q Consensus 315 ~~~~~~~~~~~~-~~~~-~~nv~~~~---~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v 389 (476)
...+.. ...+. .... .+++.+.+ |.+...++.++.+ ++|-.| |-.-||-+.|+|.+++=...++|. ++
T Consensus 244 ~H~~~~-v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v 316 (383)
T COG0381 244 VHPRPR-VRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GV 316 (383)
T ss_pred CCCChh-hhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---ce
Confidence 544421 11222 2222 23566554 6778889999988 999877 345699999999999999999997 33
Q ss_pred HHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC
Q 039701 390 VQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG 433 (476)
Q Consensus 390 ~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~ 433 (476)
..|.-+.+ ..+.+.|.+++.++++++
T Consensus 317 --~agt~~lv----------------g~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 317 --EAGTNILV----------------GTDEENILDAATELLEDE 342 (383)
T ss_pred --ecCceEEe----------------CccHHHHHHHHHHHhhCh
Confidence 33444333 256799999999999887
No 121
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.56 E-value=0.011 Score=53.06 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=38.1
Q ss_pred CCCeEeeccccH-H---HhhhCCCceeeecccC----hhhHHHHHHcCCCEecccccccc
Q 039701 331 GRGLLIRGWAPQ-V---VILSHPAIGGFLTHCG----WNSVLEAVSNGLPMVTWPFFADQ 382 (476)
Q Consensus 331 ~~nv~~~~~vpq-~---~ll~~~~~~~~I~HgG----~~s~~eal~~GvP~l~~P~~~DQ 382 (476)
..|+.+.+++++ . .++..+++ +++-.. .+++.||+++|+|+|+.+....+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 578999898632 2 24444777 887776 68999999999999998876544
No 122
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.33 E-value=0.00088 Score=55.48 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=66.6
Q ss_pred eEEEecCCccc-CCHHHHHH-HHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHH-HhhhCCCceeeecc
Q 039701 281 AVYVCLGSLCD-CSTRQLIE-LGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQV-VILSHPAIGGFLTH 357 (476)
Q Consensus 281 vv~vs~GS~~~-~~~~~~~~-i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~-~ll~~~~~~~~I~H 357 (476)
+.++++|+... ...+.+.. +++.+.+...++-+.+-+.. ++.+.+. ..+|+.+.+|++.. +++..+++....+.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~--~~~l~~~-~~~~v~~~g~~~e~~~~l~~~dv~l~p~~ 79 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNG--PDELKRL-RRPNVRFHGFVEELPEILAAADVGLIPSR 79 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECES--S-HHCCH-HHCTEEEE-S-HHHHHHHHC-SEEEE-BS
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCC--HHHHHHh-cCCCEEEcCCHHHHHHHHHhCCEEEEEee
Confidence 34555666543 23333333 44445433233333332222 2233322 25699999999744 58999999655442
Q ss_pred --cC-hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcC
Q 039701 358 --CG-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDE 432 (476)
Q Consensus 358 --gG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~ 432 (476)
.| .+++.|++++|+|+|+.+.. ..... +..+.|..+ . -+++++.++|.++++|
T Consensus 80 ~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~--~--------------~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 80 FNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV--A--------------NDPEELAEAIERLLND 135 (135)
T ss_dssp S-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE---T--------------T-HHHHHHHHHHHHH-
T ss_pred CCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE--C--------------CCHHHHHHHHHHHhcC
Confidence 23 48999999999999998771 22233 346777666 3 3899999999999865
No 123
>PRK14099 glycogen synthase; Provisional
Probab=97.30 E-value=0.26 Score=50.47 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=71.3
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHh---CCCCeEEEEcCCCCCchhHHHHh--cCCCe-EeeccccHHH-hh-hCCCcee
Q 039701 282 VYVCLGSLCDCSTRQLIELGLGLEA---TKKPFIWVIRPGDQAFEKFEERI--EGRGL-LIRGWAPQVV-IL-SHPAIGG 353 (476)
Q Consensus 282 v~vs~GS~~~~~~~~~~~i~~a~~~---~~~~~i~~~~~~~~~~~~~~~~~--~~~nv-~~~~~vpq~~-ll-~~~~~~~ 353 (476)
++...|... ..+.+..+++|+.. .+.++++.-.+.....+.+.+.. .+.++ .+.+|-.... ++ ..+++
T Consensus 297 li~~VgRL~--~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDi-- 372 (485)
T PRK14099 297 LLGVISRLS--WQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADA-- 372 (485)
T ss_pred EEEEEecCC--ccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCE--
Confidence 333445544 23445556666553 35555554433211112232221 24555 4666633322 33 35677
Q ss_pred eec---ccChh-hHHHHHHcCCCEecccccc--cchhhHHHHHHhh--cceEEeccCCCCCCcccccCCcccchhHHHHH
Q 039701 354 FLT---HCGWN-SVLEAVSNGLPMVTWPFFA--DQFCNEKLVVQVL--RIGVTIGAERPPSLADEERNGVPVKKEDVKKA 425 (476)
Q Consensus 354 ~I~---HgG~~-s~~eal~~GvP~l~~P~~~--DQ~~~a~~v~e~~--g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~ 425 (476)
|+. +=|.| +.+||+++|+|.|+....+ |--.......+.. +-|...+. -++++|.++
T Consensus 373 fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~---------------~d~~~La~a 437 (485)
T PRK14099 373 LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP---------------VTADALAAA 437 (485)
T ss_pred EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC---------------CCHHHHHHH
Confidence 774 34444 7789999998766654321 2111110000011 35666644 378999999
Q ss_pred HHH---HhcCChhhHHHHHHH
Q 039701 426 INM---LMDEGEERDERRRRA 443 (476)
Q Consensus 426 i~~---ll~~~~~~~~~r~~a 443 (476)
|.+ +++|++..+.+.+++
T Consensus 438 i~~a~~l~~d~~~~~~l~~~~ 458 (485)
T PRK14099 438 LRKTAALFADPVAWRRLQRNG 458 (485)
T ss_pred HHHHHHHhcCHHHHHHHHHHh
Confidence 987 566664444444444
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.99 E-value=0.0062 Score=59.14 Aligned_cols=110 Identities=16% Similarity=0.292 Sum_probs=78.8
Q ss_pred CCCeEeeccccHHHh---hhCCCceeeeccc-------Ch------hhHHHHHHcCCCEecccccccchhhHHHHHHhhc
Q 039701 331 GRGLLIRGWAPQVVI---LSHPAIGGFLTHC-------GW------NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLR 394 (476)
Q Consensus 331 ~~nv~~~~~vpq~~l---l~~~~~~~~I~Hg-------G~------~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g 394 (476)
.+||.+.+|+|+.++ |.. +.+++...- .. +-+.+.+++|+|+|+. ++...+..+ ++.+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCC
Confidence 679999999998765 443 332222211 11 2377889999999985 456788888 6999
Q ss_pred ceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 039701 395 IGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIK 469 (476)
Q Consensus 395 ~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 469 (476)
.|..++ +.+++.+++.++. +++.++|++|++++++++++ |.....++++++.
T Consensus 280 ~G~~v~-----------------~~~el~~~l~~~~--~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD-----------------SLEELPEIIDNIT--EEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred ceEEeC-----------------CHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 998874 2357888888864 45677899999999999874 6666666666654
No 125
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.83 E-value=0.63 Score=46.50 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=67.2
Q ss_pred EecCCcccCCHHHHHHHHHHHHhCCCCe-EEEEcCCCCCchhHHHHhcCCCeEeecccc-H---HHhhhCCCceeeeccc
Q 039701 284 VCLGSLCDCSTRQLIELGLGLEATKKPF-IWVIRPGDQAFEKFEERIEGRGLLIRGWAP-Q---VVILSHPAIGGFLTHC 358 (476)
Q Consensus 284 vs~GS~~~~~~~~~~~i~~a~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~nv~~~~~vp-q---~~ll~~~~~~~~I~Hg 358 (476)
+..|.......+.+..+++|+...+..+ ++.+|.... . .+.++...++.. + ..+++.+++ ||.-.
T Consensus 245 l~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~---~-----~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS 314 (405)
T PRK10125 245 AVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP---F-----TAGNVVNHGFETDKRKLMSALNQMDA--LVFSS 314 (405)
T ss_pred EEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc---c-----cccceEEecCcCCHHHHHHHHHhCCE--EEECC
Confidence 3344422223344577888888765443 444554321 0 135677667653 2 346667888 77643
Q ss_pred C----hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHH
Q 039701 359 G----WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAI 426 (476)
Q Consensus 359 G----~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i 426 (476)
= -+++.||+++|+|+|+....+ ....+ +. +-|..++.. +.++|++++
T Consensus 315 ~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~~---------------d~~~La~~~ 365 (405)
T PRK10125 315 RVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSEE---------------EVLQLAQLS 365 (405)
T ss_pred ccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECCC---------------CHHHHHhcc
Confidence 2 368999999999999987764 22334 23 468777554 667777643
No 126
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.78 E-value=0.079 Score=51.05 Aligned_cols=140 Identities=14% Similarity=0.047 Sum_probs=78.1
Q ss_pred cccCCCCCceEEEecCCccc---CCHHHHHHHHHHHHhCCCCeEEEEcCCCCC--chhHHHHhcCCCeEeec--cccHH-
Q 039701 272 WLDSWQPGSAVYVCLGSLCD---CSTRQLIELGLGLEATKKPFIWVIRPGDQA--FEKFEERIEGRGLLIRG--WAPQV- 343 (476)
Q Consensus 272 ~l~~~~~~~vv~vs~GS~~~---~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~nv~~~~--~vpq~- 343 (476)
++....+++.|.+.-|+... .+.+.+.++++.+.+.+.++++..++.... .+.+.+.. + +..+.+ -+++.
T Consensus 172 ~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~-~-~~~l~g~~sL~el~ 249 (319)
T TIGR02193 172 FLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEAL-P-GAVVLPKMSLAEVA 249 (319)
T ss_pred hhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhC-C-CCeecCCCCHHHHH
Confidence 44333234455555565433 457888899988876677777665543210 11222211 2 222333 34444
Q ss_pred HhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHH
Q 039701 344 VILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVK 423 (476)
Q Consensus 344 ~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~ 423 (476)
.+++++++ +|+. -.|.++=|.+.|+|.|++=-.. +..+.. =+|-...+-.. ..-..++++++.
T Consensus 250 ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t----~p~~~~-P~~~~~~~~~~---------~~~~~I~~~~V~ 312 (319)
T TIGR02193 250 ALLAGADA--VVGV-DTGLTHLAAALDKPTVTLYGAT----DPGRTG-GYGKPNVALLG---------ESGANPTPDEVL 312 (319)
T ss_pred HHHHcCCE--EEeC-CChHHHHHHHcCCCEEEEECCC----CHhhcc-cCCCCceEEcc---------CccCCCCHHHHH
Confidence 59999999 9987 5688999999999999862211 122210 11111111000 001279999999
Q ss_pred HHHHHHh
Q 039701 424 KAINMLM 430 (476)
Q Consensus 424 ~~i~~ll 430 (476)
++++++|
T Consensus 313 ~ai~~~~ 319 (319)
T TIGR02193 313 AALEELL 319 (319)
T ss_pred HHHHhhC
Confidence 9998875
No 127
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.77 E-value=0.013 Score=58.97 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=82.9
Q ss_pred CCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHH-----HhcCCCeEeeccccHHH-----hhh
Q 039701 278 PGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEE-----RIEGRGLLIRGWAPQVV-----ILS 347 (476)
Q Consensus 278 ~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~nv~~~~~vpq~~-----ll~ 347 (476)
+..|||.+|--....+++.++.-++-++..+..++|..+........|.. ...|+.|++.+-+.-.+ .|.
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~La 836 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLA 836 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhh
Confidence 44589998887777889999999999999999999999876432122221 23577888776555333 232
Q ss_pred CCCceeeecccChhhHHHHHHcCCCEecccccccchhhHH-HHHHhhcceEEe
Q 039701 348 HPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEK-LVVQVLRIGVTI 399 (476)
Q Consensus 348 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~-~v~e~~g~G~~l 399 (476)
...++-..+ .|+.|.++.|+.|||||.+|.-.--...|. .+ -.+|+|.-+
T Consensus 837 Dv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll-~~~Gl~hli 887 (966)
T KOG4626|consen 837 DVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLL-TALGLGHLI 887 (966)
T ss_pred hhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHH-HHcccHHHH
Confidence 222333444 478999999999999999999665544443 45 378888633
No 128
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.66 E-value=0.17 Score=49.51 Aligned_cols=95 Identities=11% Similarity=0.134 Sum_probs=61.8
Q ss_pred CceEEEecCCccc---CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCc---hhHHHHhcC-CCeEeecc--ccHH-HhhhC
Q 039701 279 GSAVYVCLGSLCD---CSTRQLIELGLGLEATKKPFIWVIRPGDQAF---EKFEERIEG-RGLLIRGW--APQV-VILSH 348 (476)
Q Consensus 279 ~~vv~vs~GS~~~---~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~---~~~~~~~~~-~nv~~~~~--vpq~-~ll~~ 348 (476)
++.|.+.-|+... .+.+.+.++++.+.+.+.++++..++++... +.+.+.... ..+-..+. +.+. .++.+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 262 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDH 262 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHh
Confidence 3467777787643 4578889999988877888777655443111 122221111 22223343 3444 58999
Q ss_pred CCceeeecccChhhHHHHHHcCCCEecc
Q 039701 349 PAIGGFLTHCGWNSVLEAVSNGLPMVTW 376 (476)
Q Consensus 349 ~~~~~~I~HgG~~s~~eal~~GvP~l~~ 376 (476)
+++ +|++ -.|-++=|.+.|+|+|++
T Consensus 263 a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 263 AQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred CCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 999 9987 568889999999999877
No 129
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.64 E-value=0.0019 Score=49.67 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=50.8
Q ss_pred cccccccccCCCCCceEEEecCCcccC---C--HHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeE
Q 039701 266 GSGCLKWLDSWQPGSAVYVCLGSLCDC---S--TRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLL 335 (476)
Q Consensus 266 ~~~l~~~l~~~~~~~vv~vs~GS~~~~---~--~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~ 335 (476)
...+..|+...+.++.|++|+||.... . ...+..++++++.++..+|..+...+ .+.+.. .|+||.
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~--~~~lg~--lP~nVR 97 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ--RAELGE--LPDNVR 97 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC--CGGCCS---TTTEE
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH--HHhhCC--CCCCCC
Confidence 456779999989999999999999863 2 24778899999999999999998765 233322 377763
No 130
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.63 E-value=0.025 Score=46.95 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=65.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKL 89 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (476)
||++++.....| ...+++.|.++||+|++++.....+..... .+++++.++.+ ..
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~---------~k----- 55 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSP---------RK----- 55 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCC---------CC-----
Confidence 477777766666 557899999999999999985443322222 25777775311 00
Q ss_pred CCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCc---hhHHHHhHcC-CCcEEE
Q 039701 90 PSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLP---WTVSSACKFN-VPRIVF 146 (476)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~---~~~~~A~~~g-iP~v~~ 146 (476)
..+..+ . .. .+.+++++ .+||+|.+....+ .+..+++..+ +|.+..
T Consensus 56 ---~~~~~~----~-~~-~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 56 ---SPLNYI----K-YF-RLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred ---ccHHHH----H-HH-HHHHHhcc--CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 111111 1 12 66888888 8999998877543 2445667788 888864
No 131
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.23 E-value=0.34 Score=47.22 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=61.6
Q ss_pred CceEEEecCCccc---CCHHHHHHHHHHHHhCCCCeEEEEcCCCCC---chhHHHHhcCCCeE-eecc--ccHH-HhhhC
Q 039701 279 GSAVYVCLGSLCD---CSTRQLIELGLGLEATKKPFIWVIRPGDQA---FEKFEERIEGRGLL-IRGW--APQV-VILSH 348 (476)
Q Consensus 279 ~~vv~vs~GS~~~---~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~nv~-~~~~--vpq~-~ll~~ 348 (476)
++.|.+..|+... .+.+.+.++++.+...+.++++..++.+.. .+.+.+.....++. +.+. +.+. .++.+
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 4567777777544 457888888888877778877665433210 11222211112222 3333 3444 59999
Q ss_pred CCceeeecccChhhHHHHHHcCCCEecc
Q 039701 349 PAIGGFLTHCGWNSVLEAVSNGLPMVTW 376 (476)
Q Consensus 349 ~~~~~~I~HgG~~s~~eal~~GvP~l~~ 376 (476)
+++ +|+. -.|.++=|.+.|+|.|++
T Consensus 261 a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 261 ARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred CCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 999 9998 789999999999999987
No 132
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.086 Score=52.96 Aligned_cols=119 Identities=17% Similarity=0.235 Sum_probs=85.1
Q ss_pred CCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCC--chhHHHH-----hcCCCeEeecccc---HHHhh
Q 039701 277 QPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQA--FEKFEER-----IEGRGLLIRGWAP---QVVIL 346 (476)
Q Consensus 277 ~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~--~~~~~~~-----~~~~nv~~~~~vp---q~~ll 346 (476)
++.-+||+||+......++.+..=+.-++..+-.++|..+++... ...+.+. ..+..+++.+-.| +.+=+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 445699999999999999999998888999999999998885421 2222222 3456777777666 44556
Q ss_pred hCCCceeee---cccChhhHHHHHHcCCCEecccccccchh--hHHHHHHhhcceEEe
Q 039701 347 SHPAIGGFL---THCGWNSVLEAVSNGLPMVTWPFFADQFC--NEKLVVQVLRIGVTI 399 (476)
Q Consensus 347 ~~~~~~~~I---~HgG~~s~~eal~~GvP~l~~P~~~DQ~~--~a~~v~e~~g~G~~l 399 (476)
..+++ |. --||+.|+.|+|..|||+|..+ ++|+. |+.-++..+|+-..+
T Consensus 507 ~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 507 GIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred chhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 66666 65 4799999999999999999987 55543 444443455554443
No 133
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.18 E-value=0.25 Score=49.38 Aligned_cols=175 Identities=11% Similarity=0.099 Sum_probs=99.6
Q ss_pred ccccccCCCCCceEEEecCCcccC------C----HHHHHHHHHHHHhCCCCeEEEEcC-------CCCC--chhHHHHh
Q 039701 269 CLKWLDSWQPGSAVYVCLGSLCDC------S----TRQLIELGLGLEATKKPFIWVIRP-------GDQA--FEKFEERI 329 (476)
Q Consensus 269 l~~~l~~~~~~~vv~vs~GS~~~~------~----~~~~~~i~~a~~~~~~~~i~~~~~-------~~~~--~~~~~~~~ 329 (476)
+..|+...+.+++|-||....... . .+.+..+++.+.+.++++++..-. .++. ...+.+.+
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~ 303 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHV 303 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhc
Confidence 345554433445788876544311 1 122334455555568888766532 1110 12222332
Q ss_pred c-CCCeE-ee-ccccHH--HhhhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEE-eccCC
Q 039701 330 E-GRGLL-IR-GWAPQV--VILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVT-IGAER 403 (476)
Q Consensus 330 ~-~~nv~-~~-~~vpq~--~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~-l~~~~ 403 (476)
. +.++. +. .+-+.. .+++++++ +|..==+ ++.-|+..|||.+.+++ |.. ...-+ +.+|.... .+..
T Consensus 304 ~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~~K-~~~~~-~~lg~~~~~~~~~- 375 (426)
T PRK10017 304 SDPARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--EHK-SAGIM-QQLGLPEMAIDIR- 375 (426)
T ss_pred ccccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--hHH-HHHHH-HHcCCccEEechh-
Confidence 2 23232 22 233433 68888888 8864333 45568899999999998 433 33345 58888866 5555
Q ss_pred CCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 039701 404 PPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDIL 472 (476)
Q Consensus 404 ~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~ 472 (476)
.++.++|.+.+.++++|.+ +++++.++-.++.++. +.+...++++.|-
T Consensus 376 ------------~l~~~~Li~~v~~~~~~r~---~~~~~l~~~v~~~r~~------~~~~~~~~~~~~~ 423 (426)
T PRK10017 376 ------------HLLDGSLQAMVADTLGQLP---ALNARLAEAVSRERQT------GMQMVQSVLERIG 423 (426)
T ss_pred ------------hCCHHHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHH------HHHHHHHHHHHhc
Confidence 6899999999999998653 5555554444444432 2255666666553
No 134
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.15 E-value=0.23 Score=50.76 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=70.1
Q ss_pred CCCeEeeccccHH-HhhhCCCceeeec---ccC-hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCC
Q 039701 331 GRGLLIRGWAPQV-VILSHPAIGGFLT---HCG-WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPP 405 (476)
Q Consensus 331 ~~nv~~~~~vpq~-~ll~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~ 405 (476)
.++|.+.+|..+. .+|..+++ +|. +-| -+++.||+++|+|+|+... ..+...+ +.-.-|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~--- 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA--- 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC---
Confidence 4789999987644 58899999 885 345 4699999999999998765 3455666 465667776554
Q ss_pred CCcccccCCcccchhHHHHHH---HHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHh
Q 039701 406 SLADEERNGVPVKKEDVKKAI---NMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 474 (476)
Q Consensus 406 ~~~~~~~~~~~~t~~~l~~~i---~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~ 474 (476)
+.+.+.+++ .++..+.+ ...+++...++.+.+-.+...-++...+.++++
T Consensus 524 ------------D~~aLa~ai~lA~aL~~ll~-------~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~~ 576 (578)
T PRK15490 524 ------------QTVNLDQACRYAEKLVNLWR-------SRTGICQQTQSFLQERFTVEHMVGTFVKTIASQ 576 (578)
T ss_pred ------------ChhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 333444433 22332111 112233333333334555557777777766653
No 135
>PHA01633 putative glycosyl transferase group 1
Probab=96.15 E-value=0.06 Score=51.87 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=80.1
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhCC-----C--Ce-EEEEcCCCCCchhHHHHhcCCCeEee---ccccHH---Hhh
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEATK-----K--PF-IWVIRPGDQAFEKFEERIEGRGLLIR---GWAPQV---VIL 346 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~~-----~--~~-i~~~~~~~~~~~~~~~~~~~~nv~~~---~~vpq~---~ll 346 (476)
++++..|.... .+.+..+++|++.+. . ++ ++..+.. .+.+...++++.+. +++++. .++
T Consensus 149 ~~i~~vGRl~~--~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~-----~~~~l~l~~~V~f~g~~G~~~~~dl~~~y 221 (335)
T PHA01633 149 IKFGIVSGLTK--RKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK-----QFTQLEVPANVHFVAEFGHNSREYIFAFY 221 (335)
T ss_pred eEEEEEeCCcc--ccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH-----HHHHcCCCCcEEEEecCCCCCHHHHHHHH
Confidence 45555566543 344555666665431 1 12 2333321 23332346788887 455543 578
Q ss_pred hCCCceeeecc---cCh-hhHHHHHHcCCCEecccc------cccc------hhhHHHHHH-hhcceEEeccCCCCCCcc
Q 039701 347 SHPAIGGFLTH---CGW-NSVLEAVSNGLPMVTWPF------FADQ------FCNEKLVVQ-VLRIGVTIGAERPPSLAD 409 (476)
Q Consensus 347 ~~~~~~~~I~H---gG~-~s~~eal~~GvP~l~~P~------~~DQ------~~~a~~v~e-~~g~G~~l~~~~~~~~~~ 409 (476)
..+++ +|.- =|. .++.||+++|+|+|+.-. ..|+ .++....++ ..|.|... .
T Consensus 222 ~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~--~------- 290 (335)
T PHA01633 222 GAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKI--H------- 290 (335)
T ss_pred HhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeee--c-------
Confidence 88888 8763 243 578899999999998633 2332 222222211 23444443 2
Q ss_pred cccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 039701 410 EERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETA 450 (476)
Q Consensus 410 ~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~ 450 (476)
..++++++++|.++++..+ .+....++++.++++
T Consensus 291 ------~~d~~~la~ai~~~~~~~~-~~~~~~~~~~~a~~f 324 (335)
T PHA01633 291 ------KFQIEDMANAIILAFELQD-REERSMKLKELAKKY 324 (335)
T ss_pred ------CCCHHHHHHHHHHHHhccC-hhhhhHHHHHHHHhc
Confidence 3699999999999965331 223344555555443
No 136
>PRK14098 glycogen synthase; Provisional
Probab=96.13 E-value=0.15 Score=52.37 Aligned_cols=130 Identities=10% Similarity=-0.006 Sum_probs=73.8
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHh---CCCCeEEEEcCCCCCchhHHHHh--cCCCeEeeccccHH---HhhhCCCce
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEA---TKKPFIWVIRPGDQAFEKFEERI--EGRGLLIRGWAPQV---VILSHPAIG 352 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~---~~~~~i~~~~~~~~~~~~~~~~~--~~~nv~~~~~vpq~---~ll~~~~~~ 352 (476)
.++...|.... .+.+..+++|+.. .+.++++.-.+.....+.+.+.. .++++.+..+++.. .+++.+++
T Consensus 308 ~~i~~vgRl~~--~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi- 384 (489)
T PRK14098 308 PLVGVIINFDD--FQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDM- 384 (489)
T ss_pred CEEEEeccccc--cCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCE-
Confidence 34455566543 2344445555543 35555554333211112233222 26789888888864 58888888
Q ss_pred eeeccc---Ch-hhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHH
Q 039701 353 GFLTHC---GW-NSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINM 428 (476)
Q Consensus 353 ~~I~Hg---G~-~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ 428 (476)
++.-. |. .+.+||+++|+|.|+....+-........ +.-+-|...+. -++++|.++|.+
T Consensus 385 -~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-~~~~~G~l~~~---------------~d~~~la~ai~~ 447 (489)
T PRK14098 385 -LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-EDKGSGFIFHD---------------YTPEALVAKLGE 447 (489)
T ss_pred -EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-CCCCceeEeCC---------------CCHHHHHHHHHH
Confidence 77533 22 37789999999988876533111110111 12345655543 478999999998
Q ss_pred Hh
Q 039701 429 LM 430 (476)
Q Consensus 429 ll 430 (476)
++
T Consensus 448 ~l 449 (489)
T PRK14098 448 AL 449 (489)
T ss_pred HH
Confidence 76
No 137
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.06 E-value=0.047 Score=41.68 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=53.9
Q ss_pred ccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhh
Q 039701 357 HCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEER 436 (476)
Q Consensus 357 HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~ 436 (476)
+|-..-+.|++++|+|+|+-.. +.....+ .-|...-.. . +.+++.++|..+++|+++.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~----~~~~~~~~~-------------~-~~~el~~~i~~ll~~~~~~ 66 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF----EDGEHIITY-------------N-DPEELAEKIEYLLENPEER 66 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc----CCCCeEEEE-------------C-CHHHHHHHHHHHHCCHHHH
Confidence 4556689999999999998766 2222222 223223233 2 8899999999999998655
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 039701 437 DERRRRAREYGETAKTAIEEGGSSYLNIKLLI 468 (476)
Q Consensus 437 ~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 468 (476)
+++.+++++.-. +..+....+++|+
T Consensus 67 ~~ia~~a~~~v~-------~~~t~~~~~~~il 91 (92)
T PF13524_consen 67 RRIAKNARERVL-------KRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHHHHHH-------HhCCHHHHHHHHH
Confidence 555555544443 2555556666665
No 138
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.01 E-value=0.37 Score=47.08 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=61.1
Q ss_pred CCceEEEecCCcc-c---CCHHHHHHHHHHHHhCCCCeEEEEcCCCCC-chhHHHHhcCC---C-eEeecc--ccHH-Hh
Q 039701 278 PGSAVYVCLGSLC-D---CSTRQLIELGLGLEATKKPFIWVIRPGDQA-FEKFEERIEGR---G-LLIRGW--APQV-VI 345 (476)
Q Consensus 278 ~~~vv~vs~GS~~-~---~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~---n-v~~~~~--vpq~-~l 345 (476)
+++.|.|.-|+.. . .+.+.+.++++.+...+.++++.-+..+.. .+.+....... + +-..+- +.+. .+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~al 258 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVIL 258 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHH
Confidence 4567888888753 2 468889999988876677877654433310 11121111111 1 223333 3443 59
Q ss_pred hhCCCceeeecccChhhHHHHHHcCCCEecc
Q 039701 346 LSHPAIGGFLTHCGWNSVLEAVSNGLPMVTW 376 (476)
Q Consensus 346 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 376 (476)
+.++++ +|+. -.|-++=|.+.|+|+|.+
T Consensus 259 i~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 259 IAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 999999 9986 568899999999999976
No 139
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.77 E-value=0.78 Score=44.46 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=61.2
Q ss_pred CCceEEEecCCcc-c---CCHHHHHHHHHHHHhCCCCeEEEEcCCCCC-chhHHHHhcCCCeE-eec--cccHH-HhhhC
Q 039701 278 PGSAVYVCLGSLC-D---CSTRQLIELGLGLEATKKPFIWVIRPGDQA-FEKFEERIEGRGLL-IRG--WAPQV-VILSH 348 (476)
Q Consensus 278 ~~~vv~vs~GS~~-~---~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~nv~-~~~--~vpq~-~ll~~ 348 (476)
+++.|.+.-|+.. . .+.+.+.++++.+.+.+.++|+..++.+.. .+.+.+. .+.++. ..+ -+.+. .++++
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~-~~~~~~~l~g~~sL~el~ali~~ 251 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL-LPGELRNLAGETSLDEAVDLIAL 251 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh-CCcccccCCCCCCHHHHHHHHHh
Confidence 3567888887742 2 467888899888877677776664443310 1122221 123322 223 33444 59999
Q ss_pred CCceeeecccChhhHHHHHHcCCCEecc
Q 039701 349 PAIGGFLTHCGWNSVLEAVSNGLPMVTW 376 (476)
Q Consensus 349 ~~~~~~I~HgG~~s~~eal~~GvP~l~~ 376 (476)
+++ +|+. -.|-++=|.+.|+|+|++
T Consensus 252 a~l--~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 252 AKA--VVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred CCE--EEee-CCHHHHHHHHcCCCEEEE
Confidence 999 9987 567889999999999976
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.76 E-value=1.2 Score=41.93 Aligned_cols=45 Identities=16% Similarity=0.261 Sum_probs=38.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhH
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~ 54 (476)
|||++-..+.|++.-+..+.++|+++ +-+|++++.+.+.+.++..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~ 47 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM 47 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC
Confidence 58999999999999999999999998 4899999998666655543
No 141
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.53 E-value=0.016 Score=48.92 Aligned_cols=95 Identities=19% Similarity=0.207 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHHHHHHHH
Q 039701 24 PMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIE 103 (476)
Q Consensus 24 P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (476)
-+..|+++|.++||+|+++++......-+.. ..++.+..++.+... ... .....+
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------~~~---~~~~~~-------- 60 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE-------EDGVRVHRLPLPRRP-------WPL---RLLRFL-------- 60 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE-------ETTEEEEEE--S-SS-------SGG---GHCCHH--------
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc-------cCCceEEeccCCccc-------hhh---hhHHHH--------
Confidence 3578999999999999999875444311111 124777776643111 000 001111
Q ss_pred HchHHHHHHH--HhcCCCCeEEEecCCC-chhHHHHh-HcCCCcEEEec
Q 039701 104 MLRLPLETLF--KEIQPKPGCLISDVCL-PWTVSSAC-KFNVPRIVFHG 148 (476)
Q Consensus 104 ~~~~~l~~~l--~~~~~~~D~vI~D~~~-~~~~~~A~-~~giP~v~~~~ 148 (476)
..+..++ +. .+||+|.+.... .....+++ ..++|++.-..
T Consensus 61 ---~~~~~~l~~~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 61 ---RRLRRLLAARR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp ---HHHHHHCHHCT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred ---HHHHHHHhhhc--cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 2333344 44 899999987743 23344555 88999998543
No 142
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.72 E-value=0.39 Score=41.26 Aligned_cols=96 Identities=17% Similarity=0.143 Sum_probs=56.1
Q ss_pred HCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHHHHHHHHHchHHHHHHH
Q 039701 34 QHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIEMLRLPLETLF 113 (476)
Q Consensus 34 ~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 113 (476)
++||+|+|++........ .+++.+.+..+ .. ......+....+..-....+.....+.++.
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~-------~~-~~~~~~~~~~~~e~~~~rg~av~~a~~~L~ 61 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPP-------RG-PTPGTHPYVRDFEAAVLRGQAVARAARQLR 61 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCC-------CC-CCCCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 589999999965332211 25777765421 11 111111111223332333334445555555
Q ss_pred HhcCCCCeEEEecCCCchhHHHHhHc-CCCcEEEecc
Q 039701 114 KEIQPKPGCLISDVCLPWTVSSACKF-NVPRIVFHGF 149 (476)
Q Consensus 114 ~~~~~~~D~vI~D~~~~~~~~~A~~~-giP~v~~~~~ 149 (476)
++ +..||+||+..-.-.++.+-+.+ +.|.+.++=.
T Consensus 62 ~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 62 AQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred Hc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 54 78999999998766678888888 9999986443
No 143
>PHA01630 putative group 1 glycosyl transferase
Probab=94.53 E-value=0.48 Score=45.84 Aligned_cols=39 Identities=21% Similarity=0.076 Sum_probs=28.5
Q ss_pred cccHHH---hhhCCCceeeec---ccC-hhhHHHHHHcCCCEeccccc
Q 039701 339 WAPQVV---ILSHPAIGGFLT---HCG-WNSVLEAVSNGLPMVTWPFF 379 (476)
Q Consensus 339 ~vpq~~---ll~~~~~~~~I~---HgG-~~s~~eal~~GvP~l~~P~~ 379 (476)
++|+.+ ++..+++ +|. ..| -.++.||+++|+|+|+.-..
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 466444 6888888 663 333 45889999999999997653
No 144
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=94.24 E-value=2.8 Score=40.40 Aligned_cols=133 Identities=11% Similarity=-0.052 Sum_probs=74.7
Q ss_pred EEEecCCccc--CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhc--CCCeEeec--cccHH-HhhhCCCceee
Q 039701 282 VYVCLGSLCD--CSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIE--GRGLLIRG--WAPQV-VILSHPAIGGF 354 (476)
Q Consensus 282 v~vs~GS~~~--~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~nv~~~~--~vpq~-~ll~~~~~~~~ 354 (476)
+++-.||... .+.+.+.++++.+.+.+.++++..++... . ...+.+. ..++.+.+ .+.+. .++.++++ +
T Consensus 182 ~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e-~-~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l--~ 257 (322)
T PRK10964 182 VFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE-E-QRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKA--V 257 (322)
T ss_pred EEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-H-HHHHHHHccCCcceecCCCCHHHHHHHHHhCCE--E
Confidence 3344444332 56888899998887777777665444321 1 1111111 12333333 34444 58999999 9
Q ss_pred ecccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhc
Q 039701 355 LTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMD 431 (476)
Q Consensus 355 I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~ 431 (476)
|+. -.|.++=|.+.|+|+|++=-..|...++-.- +. .....+. ..-=..++++++.++++++|+
T Consensus 258 I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~-~~---~~~~~~~--------~~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 258 VSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYG-KN---QHACRSP--------GKSMADLSAETVFQKLETLIS 321 (322)
T ss_pred Eec-CCcHHHHHHHhCCCEEEEECCCCcccccCCC-CC---ceeecCC--------CcccccCCHHHHHHHHHHHhh
Confidence 987 4588999999999999875544432221110 00 0000000 000126899999999988874
No 145
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.23 E-value=0.43 Score=41.15 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=63.3
Q ss_pred EcCCCccChHHHHHHHHHH-HHC-CCeEEEEeCCcc--hhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCC
Q 039701 14 FPFLAQGHMIPMIDIARLL-AQH-GALVTIVTTPMN--AARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKL 89 (476)
Q Consensus 14 ~~~p~~GHv~P~l~La~~L-~~r-GH~Vt~~~~~~~--~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~ 89 (476)
+..++.||+.=++.|.+.+ .++ .++..+++..+. .+.+.+..+.. +....+..++ .....
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~---~~~~~~~~~~---------r~r~v---- 66 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSS---SKRHKILEIP---------RAREV---- 66 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhc---cccceeeccc---------eEEEe----
Confidence 4458899999999999999 444 444445544332 22223221111 0001222222 11000
Q ss_pred CCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCC--CchhHHHHhHc------CCCcEEE
Q 039701 90 PSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVC--LPWTVSSACKF------NVPRIVF 146 (476)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~--~~~~~~~A~~~------giP~v~~ 146 (476)
........+.........+.-+.+. +||+||+... +.+.+.+|+.+ |.+.|.+
T Consensus 67 -~q~~~~~~~~~l~~~~~~~~il~r~---rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 67 -GQSYLTSIFTTLRAFLQSLRILRRE---RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred -chhhHhhHHHHHHHHHHHHHHHHHh---CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 0122334444444455555555554 8999998884 45678889999 9999885
No 146
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.22 E-value=5 Score=38.89 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=69.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW 86 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 86 (476)
+||+++-....|++.=.+.+-..|+++ +.++++++.+.+.+.+... +.++-+- .......
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi----------~~~~~~~ 63 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVI----------IIDKKKK 63 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhc----------ccccccc
Confidence 589999999999999999999999998 6999999988666644443 1222211 1000000
Q ss_pred CCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEE
Q 039701 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIV 145 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~ 145 (476)
. ........+...+++ .++|+||.=....-...++...++|.-.
T Consensus 64 ------~-------~~~~~~~~l~~~lr~--~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 64 ------G-------LGLKERLALLRTLRK--ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ------c-------cchHHHHHHHHHhhc--cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 001112234455555 6899999777666677777788888876
No 147
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=93.39 E-value=0.81 Score=47.13 Aligned_cols=95 Identities=11% Similarity=0.183 Sum_probs=68.8
Q ss_pred CCeEeecccc--HH-HhhhCCCceeeeccc---ChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCC
Q 039701 332 RGLLIRGWAP--QV-VILSHPAIGGFLTHC---GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPP 405 (476)
Q Consensus 332 ~nv~~~~~vp--q~-~ll~~~~~~~~I~Hg---G~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~ 405 (476)
..|.+.++.. +. .++..+.+ +|.=+ |.++..||+.+|+||| .......| +...=|.-+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 5788888877 33 57877777 88877 6789999999999999 33334444 344444443 2
Q ss_pred CCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 039701 406 SLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTA 453 (476)
Q Consensus 406 ~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~ 453 (476)
+..+|.++|..+|.+.+.-+.+...|-+.+.+..+.
T Consensus 474 ------------d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~ 509 (519)
T TIGR03713 474 ------------DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSE 509 (519)
T ss_pred ------------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence 668999999999998866667777777777666543
No 148
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.33 E-value=0.96 Score=37.42 Aligned_cols=59 Identities=15% Similarity=0.060 Sum_probs=45.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEee
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFY 71 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~ 71 (476)
+++|++.+.++.+|-....-++..|.++|++|+++...-..+.+.+..... +..++.++
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~-----~~d~V~lS 61 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET-----DADAILVS 61 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-----CCCEEEEc
Confidence 789999999999999999999999999999999998765555554443322 34555544
No 149
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.24 E-value=0.47 Score=40.55 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=23.3
Q ss_pred CccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 18 AQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 18 ~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
..|=-.-+..|+++|+++||+|+++++.
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~ 38 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPG 38 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 4566677889999999999999999876
No 150
>PLN02939 transferase, transferring glycosyl groups
Probab=91.18 E-value=8.2 Score=42.40 Aligned_cols=131 Identities=11% Similarity=0.126 Sum_probs=72.5
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHh---CCCCeEEEEcCCCCC-chhHHH---Hh-cCCCeEeeccccHH---HhhhCCC
Q 039701 282 VYVCLGSLCDCSTRQLIELGLGLEA---TKKPFIWVIRPGDQA-FEKFEE---RI-EGRGLLIRGWAPQV---VILSHPA 350 (476)
Q Consensus 282 v~vs~GS~~~~~~~~~~~i~~a~~~---~~~~~i~~~~~~~~~-~~~~~~---~~-~~~nv~~~~~vpq~---~ll~~~~ 350 (476)
++...|... ..+.+..+++|+.. .+.++++.-.+.... .+.+.. +. ..++|.+..+.+.. .++..++
T Consensus 781 LIg~VGRL~--~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAaAD 858 (977)
T PLN02939 781 LVGCITRLV--PQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAASD 858 (977)
T ss_pred EEEEeecCC--cccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCC
Confidence 444455544 23445556666543 356655544332210 112222 11 24578888888764 4888888
Q ss_pred ceeeecc---cCh-hhHHHHHHcCCCEecccccc--cchh--hHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHH
Q 039701 351 IGGFLTH---CGW-NSVLEAVSNGLPMVTWPFFA--DQFC--NEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDV 422 (476)
Q Consensus 351 ~~~~I~H---gG~-~s~~eal~~GvP~l~~P~~~--DQ~~--~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l 422 (476)
+ ||.- =|. .+.+||+++|+|.|+....+ |.-. +...+.+.-+-|...+. .++++|
T Consensus 859 I--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~---------------~D~eaL 921 (977)
T PLN02939 859 M--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLT---------------PDEQGL 921 (977)
T ss_pred E--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecC---------------CCHHHH
Confidence 8 8853 232 48899999999999875533 1110 01111012244555433 478888
Q ss_pred HHHHHHHhc
Q 039701 423 KKAINMLMD 431 (476)
Q Consensus 423 ~~~i~~ll~ 431 (476)
..+|.+++.
T Consensus 922 a~AL~rAL~ 930 (977)
T PLN02939 922 NSALERAFN 930 (977)
T ss_pred HHHHHHHHH
Confidence 888888764
No 151
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.03 E-value=3.5 Score=33.00 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=37.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhH
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 54 (476)
||++.+.++..|.....-++..|.++|++|+++......+.+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~ 45 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEA 45 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 589999999999999999999999999999988764444444443
No 152
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=90.39 E-value=2.4 Score=43.04 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=67.4
Q ss_pred eeccccHHH---hhhCCCceeeec---ccChh-hHHHHHHcCCC----EecccccccchhhHHHHHHhhcceEEeccCCC
Q 039701 336 IRGWAPQVV---ILSHPAIGGFLT---HCGWN-SVLEAVSNGLP----MVTWPFFADQFCNEKLVVQVLRIGVTIGAERP 404 (476)
Q Consensus 336 ~~~~vpq~~---ll~~~~~~~~I~---HgG~~-s~~eal~~GvP----~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~ 404 (476)
+.+.+++.+ ++..+++ ++. +=|.| +..||+++|+| +|+--+.+ .+..+ +-|..+++.
T Consensus 340 l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP~-- 407 (456)
T TIGR02400 340 LNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNPY-- 407 (456)
T ss_pred EcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECCC--
Confidence 344566554 6778888 775 44654 77799999999 55544433 22223 236666554
Q ss_pred CCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 039701 405 PSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDIL 472 (476)
Q Consensus 405 ~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~ 472 (476)
+.++++++|.++|+++. ++.+++.+++.+... ..+...-.++|++++.
T Consensus 408 -------------d~~~lA~aI~~aL~~~~--~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 408 -------------DIDGMADAIARALTMPL--EEREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred -------------CHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 78999999999998541 244445555555433 3566677888887764
No 153
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.79 E-value=18 Score=34.05 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=53.7
Q ss_pred CCCeEeecccc---HHHhhhCCCceeeecc---cChh-hHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCC
Q 039701 331 GRGLLIRGWAP---QVVILSHPAIGGFLTH---CGWN-SVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAER 403 (476)
Q Consensus 331 ~~nv~~~~~vp---q~~ll~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~ 403 (476)
.+++.+.++++ ...++..+++ ++.- .|.| ++.||+++|+|+|... .......+ ...+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~-~~~~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVV-EDGETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHh-cCCCceE-ecCC-
Confidence 36788889988 3346776776 6665 3554 4699999999996544 33333344 2333465 4332
Q ss_pred CCCCcccccCCcccchhHHHHHHHHHhcCC
Q 039701 404 PPSLADEERNGVPVKKEDVKKAINMLMDEG 433 (476)
Q Consensus 404 ~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~ 433 (476)
.+.+++..++..++++.
T Consensus 327 -------------~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 327 -------------GDVEELADALEQLLEDP 343 (381)
T ss_pred -------------CCHHHHHHHHHHHhcCH
Confidence 26899999999999865
No 154
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=89.79 E-value=1.1 Score=45.70 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=60.1
Q ss_pred EeeccccHHH---hhhCCCceeeec---ccChh-hHHHHHHcCCC---EecccccccchhhHHHHHHhhcceEEeccCCC
Q 039701 335 LIRGWAPQVV---ILSHPAIGGFLT---HCGWN-SVLEAVSNGLP---MVTWPFFADQFCNEKLVVQVLRIGVTIGAERP 404 (476)
Q Consensus 335 ~~~~~vpq~~---ll~~~~~~~~I~---HgG~~-s~~eal~~GvP---~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~ 404 (476)
++.+++++.+ ++..+++ +|. +-|.| ++.||+++|+| +|++--...- . +...-|..+++
T Consensus 344 ~~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~------~-~~~~~g~lv~p--- 411 (460)
T cd03788 344 YLYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA------A-EELSGALLVNP--- 411 (460)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc------h-hhcCCCEEECC---
Confidence 3446777654 6888888 763 45654 67899999999 3333322111 1 11223555544
Q ss_pred CCCcccccCCcccchhHHHHHHHHHhcCCh-hhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 039701 405 PSLADEERNGVPVKKEDVKKAINMLMDEGE-ERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDI 471 (476)
Q Consensus 405 ~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~-~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i 471 (476)
.+.++++++|.+++++++ +++.+.++++ +... .-+...-.+.+++++
T Consensus 412 ------------~d~~~la~ai~~~l~~~~~e~~~~~~~~~---~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ------------YDIDEVADAIHRALTMPLEERRERHRKLR---EYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred ------------CCHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHH-----hCCHHHHHHHHHHhh
Confidence 378999999999998662 2222222222 2222 345556666666654
No 155
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.16 E-value=21 Score=34.14 Aligned_cols=126 Identities=15% Similarity=-0.027 Sum_probs=80.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (476)
+.|++++..|--||--.+--=|..|++.|.+|.++...+.....+=. ..++++++.++.+ + . ..
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~------~hprI~ih~m~~l------~-~---~~ 75 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL------NHPRIRIHGMPNL------P-F---LQ 75 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh------cCCceEEEeCCCC------c-c---cC
Confidence 77999999999999999999999999999999999775443321111 1347999987633 2 1 11
Q ss_pred CCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecC-CCchhH----HHHhHcCCCcEEEecchHHH
Q 039701 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDV-CLPWTV----SSACKFNVPRIVFHGFSCFC 153 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~-~~~~~~----~~A~~~giP~v~~~~~~~~~ 153 (476)
..+ ..+......+-+....+..++.. .++|.++.-+ -+.... ......|..+++=+....+.
T Consensus 76 ~~p--~~~~l~lKvf~Qfl~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 76 GGP--RVLFLPLKVFWQFLSLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred CCc--hhhhhHHHHHHHHHHHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 111 23344555555555566666555 7899887655 333333 33344577777755554443
No 156
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=88.36 E-value=11 Score=37.87 Aligned_cols=125 Identities=11% Similarity=0.028 Sum_probs=77.1
Q ss_pred CCceEEEecCCcccCCHHHHHHHHHHHHhC-CCCeEEEEcCCCCCchhHHHHhcCCCeE-eecccc-H-HHhhhCCCcee
Q 039701 278 PGSAVYVCLGSLCDCSTRQLIELGLGLEAT-KKPFIWVIRPGDQAFEKFEERIEGRGLL-IRGWAP-Q-VVILSHPAIGG 353 (476)
Q Consensus 278 ~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~nv~-~~~~vp-q-~~ll~~~~~~~ 353 (476)
.+.++++| ..+.+..+....++. +.++=...+..- .+.+.....-+|++ ..++.+ . .+++..|++-+
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~--s~kL~~L~~y~nvvly~~~~~~~l~~ly~~~dlyL 352 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEM--SSKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYL 352 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcc--cHHHHHHHhcCCcEEECCcChHHHHHHHHhccEEE
Confidence 34467666 245555566655554 445433333221 11232211225555 445577 3 36999999999
Q ss_pred eecccC--hhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhc
Q 039701 354 FLTHCG--WNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMD 431 (476)
Q Consensus 354 ~I~HgG--~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~ 431 (476)
-|+||. ..++.||+.+|+|++..=...... ..+. . |..... -+.+++.++|.++|.
T Consensus 353 din~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~-~---g~l~~~---------------~~~~~m~~~i~~lL~ 410 (438)
T TIGR02919 353 DINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIA-S---ENIFEH---------------NEVDQLISKLKDLLN 410 (438)
T ss_pred EccccccHHHHHHHHHHcCCcEEEEecccCCc---cccc-C---CceecC---------------CCHHHHHHHHHHHhc
Confidence 999987 479999999999999876543322 2231 2 433333 468999999999998
Q ss_pred CC
Q 039701 432 EG 433 (476)
Q Consensus 432 ~~ 433 (476)
|+
T Consensus 411 d~ 412 (438)
T TIGR02919 411 DP 412 (438)
T ss_pred CH
Confidence 87
No 157
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.09 E-value=3.4 Score=34.91 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=62.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (476)
.+||.+.-.|+-|-..-++.++..|.++|++|-=+.+++ ++.- |-.+.|.-+...+.+.+.......
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E----VR~g-------GkR~GF~Ivdl~tg~~~~la~~~~-- 71 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE----VREG-------GKRIGFKIVDLATGEEGILARVGF-- 71 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee----eecC-------CeEeeeEEEEccCCceEEEEEcCC--
Confidence 689999999999999999999999999999998554452 3332 333444333333222111111110
Q ss_pred CCCCcCcHHHHHHHHH-HchHHHHHHHHhcCCCCeEEEecCCC
Q 039701 88 KLPSMALLPKFFAAIE-MLRLPLETLFKEIQPKPGCLISDVCL 129 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~D~vI~D~~~ 129 (476)
..+....+....+.++ -....++..++ ..|+||.|-.-
T Consensus 72 ~~~rvGkY~V~v~~le~i~~~al~rA~~----~aDvIIIDEIG 110 (179)
T COG1618 72 SRPRVGKYGVNVEGLEEIAIPALRRALE----EADVIIIDEIG 110 (179)
T ss_pred CCcccceEEeeHHHHHHHhHHHHHHHhh----cCCEEEEeccc
Confidence 1122233333333433 34456666554 37999999864
No 158
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=85.28 E-value=24 Score=33.40 Aligned_cols=130 Identities=19% Similarity=0.217 Sum_probs=79.9
Q ss_pred EEEecCCcccCCHHHHHHHHHHHH---hCCCCeEEEEcC--CCC-CchhHHH----HhcCCCeEe-ecccc---HHHhhh
Q 039701 282 VYVCLGSLCDCSTRQLIELGLGLE---ATKKPFIWVIRP--GDQ-AFEKFEE----RIEGRGLLI-RGWAP---QVVILS 347 (476)
Q Consensus 282 v~vs~GS~~~~~~~~~~~i~~a~~---~~~~~~i~~~~~--~~~-~~~~~~~----~~~~~nv~~-~~~vp---q~~ll~ 347 (476)
+-|=+|.++..+... .++++++. ..+.++++-.+- +.. ..+.+.+ ...++++.+ .+++| +..+|+
T Consensus 147 ~tIlvGNSgd~SN~H-ie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~ 225 (322)
T PRK02797 147 MTILVGNSGDRSNRH-IEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLR 225 (322)
T ss_pred eEEEEeCCCCCcccH-HHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHH
Confidence 444566666544333 34445553 344577765555 222 1222211 122366664 45666 667999
Q ss_pred CCCceeeecc--cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHH
Q 039701 348 HPAIGGFLTH--CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKA 425 (476)
Q Consensus 348 ~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~ 425 (476)
.|+++.|+|+ =|.||++-.++.|+|+++- -+-++|.... +.|+-+-.+.+ .++...+.++
T Consensus 226 ~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~--e~gv~Vlf~~d-------------~L~~~~v~e~ 287 (322)
T PRK02797 226 QCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT--EQGLPVLFTGD-------------DLDEDIVREA 287 (322)
T ss_pred hCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH--hCCCeEEecCC-------------cccHHHHHHH
Confidence 9999888886 4899999999999999875 3445665544 45666544554 6888888777
Q ss_pred HHHHh
Q 039701 426 INMLM 430 (476)
Q Consensus 426 i~~ll 430 (476)
=+++.
T Consensus 288 ~rql~ 292 (322)
T PRK02797 288 QRQLA 292 (322)
T ss_pred HHHHH
Confidence 55543
No 159
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=84.53 E-value=3.6 Score=32.92 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=37.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhH
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 54 (476)
+|+++.+.+..-|-..+.-||..|.++||+|.++-.....+.+.+.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~ 46 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEA 46 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHH
Confidence 5899999999999999999999999999999998655444444443
No 160
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=83.80 E-value=14 Score=31.55 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=22.6
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEecccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
.+++++|+|- +.+.+|...++|+|++.-
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3348999885 477899999999999964
No 161
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=83.56 E-value=26 Score=33.66 Aligned_cols=131 Identities=17% Similarity=0.172 Sum_probs=82.1
Q ss_pred EEEecCCcccCCHHHHHHHHHHHH---hCCCCeEEEEcCCCC---CchhHHH----HhcCCCeEe-ecccc---HHHhhh
Q 039701 282 VYVCLGSLCDCSTRQLIELGLGLE---ATKKPFIWVIRPGDQ---AFEKFEE----RIEGRGLLI-RGWAP---QVVILS 347 (476)
Q Consensus 282 v~vs~GS~~~~~~~~~~~i~~a~~---~~~~~~i~~~~~~~~---~~~~~~~----~~~~~nv~~-~~~vp---q~~ll~ 347 (476)
+.|=.|.+...+...+ +++++++ ..+.++++=.+-+.. ..+.+.+ ....+|+.+ .+++| +..+|.
T Consensus 186 ltILvGNSgd~sNnHi-eaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~ 264 (360)
T PF07429_consen 186 LTILVGNSGDPSNNHI-EALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLS 264 (360)
T ss_pred eEEEEcCCCCCCccHH-HHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHH
Confidence 5555666665443333 3333443 235677765554421 1222221 122357764 56887 567999
Q ss_pred CCCceeeecc--cChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHH
Q 039701 348 HPAIGGFLTH--CGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKA 425 (476)
Q Consensus 348 ~~~~~~~I~H--gG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~ 425 (476)
.|+++.|+|. =|.|+++-.|+.|+|+++- -+-++|-... +.|+=+.-..+ .++...|+++
T Consensus 265 ~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~--~~~ipVlf~~d-------------~L~~~~v~ea 326 (360)
T PF07429_consen 265 RCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLK--EQGIPVLFYGD-------------ELDEALVREA 326 (360)
T ss_pred hCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHH--hCCCeEEeccc-------------cCCHHHHHHH
Confidence 9999777775 5899999999999999864 4556665555 44655444333 7999999999
Q ss_pred HHHHhc
Q 039701 426 INMLMD 431 (476)
Q Consensus 426 i~~ll~ 431 (476)
=+++..
T Consensus 327 ~rql~~ 332 (360)
T PF07429_consen 327 QRQLAN 332 (360)
T ss_pred HHHHhh
Confidence 888764
No 162
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=81.80 E-value=15 Score=31.31 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=22.1
Q ss_pred eeeecccChh------hHHHHHHcCCCEecccc
Q 039701 352 GGFLTHCGWN------SVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 352 ~~~I~HgG~~------s~~eal~~GvP~l~~P~ 378 (476)
+++++|+|-| .+.||...++|+|++.-
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 3389998854 67799999999999954
No 163
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=81.75 E-value=15 Score=32.56 Aligned_cols=49 Identities=10% Similarity=-0.062 Sum_probs=41.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhh
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIE 56 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 56 (476)
+.+|++.+.++..|-....-++..|.++|.+|+++...--.+.+.+...
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~ 132 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK 132 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999987655555555444
No 164
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=81.55 E-value=5.3 Score=41.26 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=55.4
Q ss_pred cHHHhhhCCCceeeec---ccChh-hHHHHHHcCCCEecccccccchhhHHHHHHhh-cceEEeccCCCCCCcccccCCc
Q 039701 341 PQVVILSHPAIGGFLT---HCGWN-SVLEAVSNGLPMVTWPFFADQFCNEKLVVQVL-RIGVTIGAERPPSLADEERNGV 415 (476)
Q Consensus 341 pq~~ll~~~~~~~~I~---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~-g~G~~l~~~~~~~~~~~~~~~~ 415 (476)
+..+++..|++ +|. +=|+| ++.||+++|+|+|+....+=. .+...+...- ..|..+...+ ..+-
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~~~~~gi~V~~r~--------~~~~ 535 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIEDPESYGIYIVDRR--------FKSP 535 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhccCCCceEEEecCC--------ccch
Confidence 46677888888 665 45654 899999999999998764311 1112221111 2466665331 0011
Q ss_pred ccchhHHHHHHHHHhcCChhhHHHHHHH--HHHHHH
Q 039701 416 PVKKEDVKKAINMLMDEGEERDERRRRA--REYGET 449 (476)
Q Consensus 416 ~~t~~~l~~~i~~ll~~~~~~~~~r~~a--~~l~~~ 449 (476)
.-+.++|++++.++++ .+.++.+..+. ++++++
T Consensus 536 ~e~v~~La~~m~~~~~-~~~r~~~~~r~~~~r~s~~ 570 (590)
T cd03793 536 DESVQQLTQYMYEFCQ-LSRRQRIIQRNRTERLSDL 570 (590)
T ss_pred HHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHh
Confidence 2456889999999885 33344333332 245444
No 165
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=81.16 E-value=2.3 Score=34.74 Aligned_cols=45 Identities=18% Similarity=0.066 Sum_probs=36.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhH
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 54 (476)
+||++...|+.+=.. ...+.++|.++|++|.++.++...+.++..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 478999989877777 999999999999999999988666655554
No 166
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=80.32 E-value=12 Score=34.98 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=50.2
Q ss_pred HHHHHHHhC-CCCeEEEEcCCCCC---chhHHHHh-cCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCE
Q 039701 299 ELGLGLEAT-KKPFIWVIRPGDQA---FEKFEERI-EGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPM 373 (476)
Q Consensus 299 ~i~~a~~~~-~~~~i~~~~~~~~~---~~~~~~~~-~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~ 373 (476)
.|.++.+.. +.+++++.-+.+.. ...+.... .+..+.+.+-++-.+|+.+++. |||-.+ .+-.||+.+|+|+
T Consensus 145 ~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpV 221 (269)
T PF05159_consen 145 MLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPV 221 (269)
T ss_pred HHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCce
Confidence 344444443 67877777552210 11122221 2344556667888899999999 998865 4778999999999
Q ss_pred ecccc
Q 039701 374 VTWPF 378 (476)
Q Consensus 374 l~~P~ 378 (476)
+++..
T Consensus 222 i~~G~ 226 (269)
T PF05159_consen 222 IVFGR 226 (269)
T ss_pred EEecC
Confidence 99765
No 167
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=79.84 E-value=17 Score=30.94 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=21.9
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEecccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
.+++++|+|- +.+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 4448888775 467799999999999964
No 168
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=79.48 E-value=8.1 Score=42.22 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=61.6
Q ss_pred HhhhCCCceeeec---ccChh-hHHHHHHcCCC---EecccccccchhhHHHHHHhhc-ceEEeccCCCCCCcccccCCc
Q 039701 344 VILSHPAIGGFLT---HCGWN-SVLEAVSNGLP---MVTWPFFADQFCNEKLVVQVLR-IGVTIGAERPPSLADEERNGV 415 (476)
Q Consensus 344 ~ll~~~~~~~~I~---HgG~~-s~~eal~~GvP---~l~~P~~~DQ~~~a~~v~e~~g-~G~~l~~~~~~~~~~~~~~~~ 415 (476)
.++..+++ ++. .-|+| +..|++++|.| ++++.-+. ..+. .+| -|+.+++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~----~l~~~allVnP-------------- 427 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQ----SLGAGALLVNP-------------- 427 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchh----hhcCCeEEECC--------------
Confidence 57888888 774 44876 66699999999 44444322 2222 233 4666655
Q ss_pred ccchhHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 039701 416 PVKKEDVKKAINMLMD-EGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 416 ~~t~~~l~~~i~~ll~-~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~ 473 (476)
.+.++++++|.++|+ +++ +.+++.+++.+..+ .-+...-.+.|++.+++
T Consensus 428 -~D~~~lA~AI~~aL~m~~~---er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 428 -WNITEVSSAIKEALNMSDE---ERETRHRHNFQYVK-----THSAQKWADDFMSELND 477 (797)
T ss_pred -CCHHHHHHHHHHHHhCCHH---HHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHH
Confidence 488999999999998 432 33344444444444 33455667777776654
No 169
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=79.35 E-value=2.3 Score=32.60 Aligned_cols=84 Identities=21% Similarity=0.171 Sum_probs=48.5
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHHHHHHHHH
Q 039701 25 MIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIEM 104 (476)
Q Consensus 25 ~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (476)
++.+|+.|.+.|+++ ++++.....+++. ++....+..... .++ .. ..+.
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~~~---~~~---~~----~g~~---------- 50 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH---------GIEVTEVVNKIG---EGE---SP----DGRV---------- 50 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT---------T--EEECCEEHS---TG----GG----THCH----------
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc---------CCCceeeeeecc---cCc---cC----Cchh----------
Confidence 578999999999654 5666666666665 465433321000 000 00 0000
Q ss_pred chHHHHHHHHhcCCCCeEEEecCCCch---------hHHHHhHcCCCcE
Q 039701 105 LRLPLETLFKEIQPKPGCLISDVCLPW---------TVSSACKFNVPRI 144 (476)
Q Consensus 105 ~~~~l~~~l~~~~~~~D~vI~D~~~~~---------~~~~A~~~giP~v 144 (476)
.+.+++++ .+.|+||....-.. -..+|..++||++
T Consensus 51 ---~i~~~i~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 ---QIMDLIKN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp ---HHHHHHHT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred ---HHHHHHHc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 67778888 89999997764311 1467888899876
No 170
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=79.23 E-value=19 Score=33.21 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 039701 4 QAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (476)
Q Consensus 4 ~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~ 49 (476)
+++ ++|||+.-=-+. |---+..|+++|.+.| +|+++++.....
T Consensus 2 ~~~-~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 2 QDK-KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCC-CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 455 788887653332 2246889999999888 799998875544
No 171
>PLN02470 acetolactate synthase
Probab=79.00 E-value=13 Score=39.11 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=55.2
Q ss_pred ecCCcccCCH--HHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHh-cCCCeEeec--------cccHHHhhhCCCcee
Q 039701 285 CLGSLCDCST--RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERI-EGRGLLIRG--------WAPQVVILSHPAIGG 353 (476)
Q Consensus 285 s~GS~~~~~~--~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~nv~~~~--------~vpq~~ll~~~~~~~ 353 (476)
+|||....+. ..-+.|++.|++.+.+.|+-+.+..- ..+.+.. ..+++.+.. +.-...-..+..+++
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~--~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv 79 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS--MEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGV 79 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc--HHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEE
Confidence 4666655332 22456888999999999988877652 1222212 222343321 122222222334555
Q ss_pred eecccCh------hhHHHHHHcCCCEecccc
Q 039701 354 FLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 354 ~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
+++|.|- +++.+|...++|+|++.-
T Consensus 80 ~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 80 CIATSGPGATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred EEECCCccHHHHHHHHHHHHhcCCcEEEEec
Confidence 9999985 478899999999999953
No 172
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=78.91 E-value=8 Score=33.88 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=52.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC--CCeEEEEeC-CcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTT-PMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESW 86 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~r--GH~Vt~~~~-~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~ 86 (476)
.++-+...+-|-++-+..|+++|.++ |++|.+-++ +...+.+.+... ..+....+|++
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D------------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLD------------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---S-------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCcc-------------
Confidence 46666677899999999999999987 999888766 444444444421 12222223321
Q ss_pred CCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCch--hHHHHhHcCCCcEEEe
Q 039701 87 DKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPW--TVSSACKFNVPRIVFH 147 (476)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~--~~~~A~~~giP~v~~~ 147 (476)
....++.+++. ++||++|.--.-.| -...|++.|||.+.+.
T Consensus 83 ------------------~~~~~~rfl~~--~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 ------------------FPWAVRRFLDH--WRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ------------------SHHHHHHHHHH--H--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ------------------CHHHHHHHHHH--hCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 11245677777 89998775554434 3677888899999863
No 173
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=78.57 E-value=8.5 Score=34.19 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=39.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhH
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 54 (476)
+.+|++.+.++..|-....-++..|.++|++|+++...-..+.+.+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 57999999999999999999999999999999988765444444444
No 174
>PRK06849 hypothetical protein; Provisional
Probab=76.72 E-value=24 Score=34.95 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCc
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~ 46 (476)
+++|+++.. .....+.+|+.|.++||+|+++....
T Consensus 4 ~~~VLI~G~----~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGA----RAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCC----CcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 678888853 33368999999999999999997754
No 175
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.27 E-value=16 Score=34.20 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=47.4
Q ss_pred HHHhhhCCCceeeecccChhhH-HHHHHcCCCEecccccccchh--hHHHHHHhhcceEEeccCCCCCCcccccCCcccc
Q 039701 342 QVVILSHPAIGGFLTHCGWNSV-LEAVSNGLPMVTWPFFADQFC--NEKLVVQVLRIGVTIGAERPPSLADEERNGVPVK 418 (476)
Q Consensus 342 q~~ll~~~~~~~~I~HgG~~s~-~eal~~GvP~l~~P~~~DQ~~--~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t 418 (476)
..++|-++++ .|--. ||- -+++-.|+|+|.+|-.+-|+. .|.|-..-+|..+.+-.. .
T Consensus 305 fadiLH~ada--algmA--GTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~---------------~ 365 (412)
T COG4370 305 FADILHAADA--ALGMA--GTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP---------------E 365 (412)
T ss_pred HHHHHHHHHH--HHHhc--cchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC---------------c
Confidence 3345544444 33322 333 356789999999999999954 555553445666666443 2
Q ss_pred hhHHHHHHHHHhcCChhhHHHH
Q 039701 419 KEDVKKAINMLMDEGEERDERR 440 (476)
Q Consensus 419 ~~~l~~~i~~ll~~~~~~~~~r 440 (476)
+..-..+.++++.|+++...+|
T Consensus 366 aq~a~~~~q~ll~dp~r~~air 387 (412)
T COG4370 366 AQAAAQAVQELLGDPQRLTAIR 387 (412)
T ss_pred hhhHHHHHHHHhcChHHHHHHH
Confidence 2222333445999996555555
No 176
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=75.20 E-value=26 Score=31.16 Aligned_cols=145 Identities=9% Similarity=0.022 Sum_probs=75.9
Q ss_pred CceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeeccc
Q 039701 279 GSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHC 358 (476)
Q Consensus 279 ~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~Hg 358 (476)
+.++.|+.|.+. ...++.|.+.+..+.+... .. .+.+.+......+..........-+..+++ +|.--
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~~--~~~l~~l~~~~~i~~~~~~~~~~~l~~adl--ViaaT 78 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-EL--TENLVKLVEEGKIRWKQKEFEPSDIVDAFL--VIAAT 78 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-CC--CHHHHHHHhCCCEEEEecCCChhhcCCceE--EEEcC
Confidence 458888877654 3344555556666665543 21 122333322344555555555566777787 88887
Q ss_pred ChhhHHHHHH----cCCCEecccccccchhhH-----HHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHH
Q 039701 359 GWNSVLEAVS----NGLPMVTWPFFADQFCNE-----KLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINML 429 (476)
Q Consensus 359 G~~s~~eal~----~GvP~l~~P~~~DQ~~~a-----~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~l 429 (476)
+.-.+.+.++ .++++-+ .|.+..+ ..+ ++-++-+.+... ++++ .-+..|++.|.++
T Consensus 79 ~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~---------G~sP-~la~~lr~~ie~~ 143 (202)
T PRK06718 79 NDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTD---------GASP-KLAKKIRDELEAL 143 (202)
T ss_pred CCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECC---------CCCh-HHHHHHHHHHHHH
Confidence 8766666655 4444333 3443332 223 232333333322 1122 3336688888887
Q ss_pred hcCChhhHHHHHHHHHHHHHHHH
Q 039701 430 MDEGEERDERRRRAREYGETAKT 452 (476)
Q Consensus 430 l~~~~~~~~~r~~a~~l~~~~~~ 452 (476)
+ ++.-..+-+...++...+++
T Consensus 144 ~--~~~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 144 Y--DESYESYIDFLYECRQKIKE 164 (202)
T ss_pred c--chhHHHHHHHHHHHHHHHHH
Confidence 7 33334555555666665554
No 177
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=75.12 E-value=7.8 Score=32.01 Aligned_cols=47 Identities=19% Similarity=0.092 Sum_probs=39.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcc-hhhhhhH
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMN-AARFQNV 54 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~-~~~~~~~ 54 (476)
|+||++.+.+..||=....-+++.|+..|.+|........ .+.+..+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA 59 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAA 59 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHH
Confidence 8999999999999999999999999999999998765433 3333444
No 178
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=74.19 E-value=11 Score=34.36 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=54.7
Q ss_pred CCceEEEecCCccc---CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcC----CCeEeeccc--cH-HHhhh
Q 039701 278 PGSAVYVCLGSLCD---CSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEG----RGLLIRGWA--PQ-VVILS 347 (476)
Q Consensus 278 ~~~vv~vs~GS~~~---~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~nv~~~~~v--pq-~~ll~ 347 (476)
+++.|.+..|+... .+.+.+.++++.+.+.++++++..++.+.. ....+.+.. ..+.+.+-. .+ ..++.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQE-KEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHH-HHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHH-HHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 34577777777654 467889999999988887766555443310 011111111 134443433 33 36888
Q ss_pred CCCceeeecccChhhHHHHHHcCCCEecc
Q 039701 348 HPAIGGFLTHCGWNSVLEAVSNGLPMVTW 376 (476)
Q Consensus 348 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~ 376 (476)
++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 183 ~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 183 RADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred cCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 9998 8887 457899999999999998
No 179
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=73.95 E-value=1.1e+02 Score=31.47 Aligned_cols=110 Identities=15% Similarity=0.081 Sum_probs=73.2
Q ss_pred eEeeccccHHH---hhhCCCceeeec---ccChhhHH-HHHHcCC----CEecccccccchhhHHHHHHhhcceEEeccC
Q 039701 334 LLIRGWAPQVV---ILSHPAIGGFLT---HCGWNSVL-EAVSNGL----PMVTWPFFADQFCNEKLVVQVLRIGVTIGAE 402 (476)
Q Consensus 334 v~~~~~vpq~~---ll~~~~~~~~I~---HgG~~s~~-eal~~Gv----P~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~ 402 (476)
+++.+.+|+.+ ++..+++ ++- .-|+|-++ |.++++. |+|.--+.+ | . +.+.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----a--a-~~l~~AllVNP- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----A--A-VELKGALLTNP- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----c--h-hhcCCCEEECC-
Confidence 56778888665 6667777 443 45888665 9999977 443332221 1 1 24555677765
Q ss_pred CCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHhc
Q 039701 403 RPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQA 475 (476)
Q Consensus 403 ~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~~ 475 (476)
.+.++++++|.+.|+.+ .++-++|.+++.+..+ ..+...=.+.|++++..++
T Consensus 433 --------------~d~~~~A~ai~~AL~m~--~~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~~~ 484 (487)
T TIGR02398 433 --------------YDPVRMDETIYVALAMP--KAEQQARMREMFDAVN-----YYDVQRWADEFLAAVSPQA 484 (487)
T ss_pred --------------CCHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhhcc
Confidence 48899999999999865 2344566666666655 4466677888999888765
No 180
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=72.60 E-value=27 Score=26.18 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=24.3
Q ss_pred HHHHHHhcCCCCeEEEecCC---------CchhHHHHhHcCCCcE
Q 039701 109 LETLFKEIQPKPGCLISDVC---------LPWTVSSACKFNVPRI 144 (476)
Q Consensus 109 l~~~l~~~~~~~D~vI~D~~---------~~~~~~~A~~~giP~v 144 (476)
+.+.++. .++|+||.... ...-...|...+||++
T Consensus 47 i~~~i~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 47 ILDLIKN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHhcC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 5667777 89999997542 1133567888999986
No 181
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=72.57 E-value=14 Score=34.69 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
...|.|.-.|+-|--.=.=.|+.+|.++||+|-++.-.
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 67899999999999999999999999999999988654
No 182
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=72.52 E-value=44 Score=27.94 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=21.4
Q ss_pred eeecccCh------hhHHHHHHcCCCEecccc
Q 039701 353 GFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 353 ~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
++++|+|- +.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 38888774 477899999999999965
No 183
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=72.27 E-value=6.5 Score=31.53 Aligned_cols=38 Identities=5% Similarity=-0.118 Sum_probs=25.7
Q ss_pred cEEEEEcCCCcc---ChHHHHHHHHHHHHCCCeEEEEeCCc
Q 039701 9 LHFILFPFLAQG---HMIPMIDIARLLAQHGALVTIVTTPM 46 (476)
Q Consensus 9 ~~vl~~~~p~~G---Hv~P~l~La~~L~~rGH~Vt~~~~~~ 46 (476)
+||+|+--|-.+ .-.-.+.|+.+-.+|||+|.++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 467777776444 34567889999999999999998653
No 184
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=71.95 E-value=50 Score=26.49 Aligned_cols=44 Identities=18% Similarity=0.070 Sum_probs=37.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 53 (476)
||++.+.++..|.....-++.-|...|++|++.....-.+.+..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~ 44 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVE 44 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 58999999999999999999999999999999987544444433
No 185
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=71.44 E-value=42 Score=26.25 Aligned_cols=84 Identities=21% Similarity=0.135 Sum_probs=55.3
Q ss_pred cChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHHHH
Q 039701 20 GHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFF 99 (476)
Q Consensus 20 GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (476)
++-.-++.+++.|.+.|+++. +++...+.+++. ++....+... ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~---------gi~~~~v~~~------~~------------------ 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA---------GIPVEVVNKV------SE------------------ 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc---------CCeEEEEeec------CC------------------
Confidence 466778899999999999983 455555545544 3554433211 00
Q ss_pred HHHHHchHHHHHHHHhcCCCCeEEEecCC-------CchhHHHHhHcCCCcEE
Q 039701 100 AAIEMLRLPLETLFKEIQPKPGCLISDVC-------LPWTVSSACKFNVPRIV 145 (476)
Q Consensus 100 ~~~~~~~~~l~~~l~~~~~~~D~vI~D~~-------~~~~~~~A~~~giP~v~ 145 (476)
....+.+.+++ .++|+||.-.. ...-...|-.+|||+++
T Consensus 55 -----~~~~i~~~i~~--~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 -----GRPNIVDLIKN--GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -----CchhHHHHHHc--CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 12346677777 89999998442 23456889999999995
No 186
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=71.35 E-value=29 Score=32.10 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCeEEEecCCCc------hhHHHHhHcCCCcEEE
Q 039701 108 PLETLFKEIQPKPGCLISDVCLP------WTVSSACKFNVPRIVF 146 (476)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~------~~~~~A~~~giP~v~~ 146 (476)
.+.+++++ .++|+||--..-+ -+..+|+.+|||++.+
T Consensus 56 ~l~~~l~~--~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 56 ELREFLKR--HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 46677777 8999877333211 2368899999999995
No 187
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=71.20 E-value=60 Score=28.91 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=74.6
Q ss_pred CceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeeccc
Q 039701 279 GSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHC 358 (476)
Q Consensus 279 ~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~Hg 358 (476)
++++.|..|.+. ..-++.|.+.+.++.+...... +.+.+.....++.+..--.+...+..+.+ +|..-
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~~---~~l~~l~~~~~i~~~~~~~~~~dl~~~~l--Vi~at 77 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEELE---SELTLLAEQGGITWLARCFDADILEGAFL--VIAAT 77 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCCC---HHHHHHHHcCCEEEEeCCCCHHHhCCcEE--EEECC
Confidence 458888877654 2334555567777665543322 23333333446665443334456667777 88888
Q ss_pred ChhhHHH-----HHHcCCCEe--cccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhc
Q 039701 359 GWNSVLE-----AVSNGLPMV--TWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMD 431 (476)
Q Consensus 359 G~~s~~e-----al~~GvP~l--~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~ 431 (476)
|...+.+ |-..|+|+- --|-..| +..-..+ ++-++-+.+... ++++ .-+..|++.|.+++.
T Consensus 78 ~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~---------G~sP-~la~~lr~~ie~~l~ 145 (205)
T TIGR01470 78 DDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSG---------GAAP-VLARLLRERIETLLP 145 (205)
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECC---------CCCc-HHHHHHHHHHHHhcc
Confidence 8765544 345688873 3333333 1122223 222233333322 1122 333668888888884
Q ss_pred CChhhHHHHHHHHHHHHHHHH
Q 039701 432 EGEERDERRRRAREYGETAKT 452 (476)
Q Consensus 432 ~~~~~~~~r~~a~~l~~~~~~ 452 (476)
+++ ..+-+...++.+.+++
T Consensus 146 -~~~-~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 146 -PSL-GDLATLAATWRDAVKK 164 (205)
T ss_pred -hhH-HHHHHHHHHHHHHHHh
Confidence 222 3444444444444443
No 188
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=70.94 E-value=9.5 Score=28.04 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=32.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEe
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~ 43 (476)
.-++++..+...|..-+-.+|+.|.++|..|...=
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 67899999999999999999999999999998664
No 189
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=69.98 E-value=1.1e+02 Score=29.58 Aligned_cols=291 Identities=18% Similarity=0.130 Sum_probs=143.2
Q ss_pred CcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchh-HHHHhHcCCCcEEEecchHHHHHHHhhhhccccCCCCCC
Q 039701 93 ALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWT-VSSACKFNVPRIVFHGFSCFCLLCLHSLSVSKAHESVSS 171 (476)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~-~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (476)
.-+..+.++...+.-.++++++ ..||+.|-.+-++.. ..+++..++|++.+..-|....-+.......
T Consensus 127 ~hfTllgQaigsmIl~~Eai~r---~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qr-------- 195 (465)
T KOG1387|consen 127 KHFTLLGQAIGSMILAFEAIIR---FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQR-------- 195 (465)
T ss_pred cceehHHHHHHHHHHHHHHHHh---CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhh--------
Confidence 4455666666667777788876 599999977766555 4555688999999887776554333222110
Q ss_pred CCcccccCCCCCcccccccccchhhhHHHhHHHHHH-hhccccEEEecchhhcCHHHHHHHHhccCCc-eEEeC-cccCC
Q 039701 172 DSEYFLVPGLPDRVEITKAQLPEILKLKSFGEPILA-AEMASYGVIVNSFEELEPAYVEEYKNARDGK-VWCVG-PVSLC 248 (476)
Q Consensus 172 ~~~~~~~Pg~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~-v~~vG-pl~~~ 248 (476)
...++ +.+.-+. +-+.+..+-. .-..++.++.|+-.--. .+...|+.+ ..-|- ||.
T Consensus 196 -----q~s~~-----l~~~Kla----Y~rlFa~lY~~~G~~ad~vm~NssWT~n-----HI~qiW~~~~~~iVyPPC~-- 254 (465)
T KOG1387|consen 196 -----QKSGI-----LVWGKLA----YWRLFALLYQSAGSKADIVMTNSSWTNN-----HIKQIWQSNTCSIVYPPCS-- 254 (465)
T ss_pred -----hhcch-----hhhHHHH----HHHHHHHHHHhccccceEEEecchhhHH-----HHHHHhhccceeEEcCCCC--
Confidence 00010 1111110 2222222222 23455667777643111 223334322 22222 221
Q ss_pred CCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCcccCCHHH-HHHHHHHHHhC-------CCCeEEEE--cCC
Q 039701 249 NKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQ-LIELGLGLEAT-------KKPFIWVI--RPG 318 (476)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~-~~~i~~a~~~~-------~~~~i~~~--~~~ 318 (476)
.+++.+-......+-+..+++|-.-.-.... ++-.+--++.. +.+.+.+- ++.
T Consensus 255 -----------------~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRne 317 (465)
T KOG1387|consen 255 -----------------TEDLKSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNE 317 (465)
T ss_pred -----------------HHHHHHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCCh
Confidence 1233333333223345667776543211111 11111111111 12333322 222
Q ss_pred CCC--c---hhHHH-HhcCCCeEeeccccHHH---hhhCCCceeeecccChh-----hHHHHHHcCCCEecccccccchh
Q 039701 319 DQA--F---EKFEE-RIEGRGLLIRGWAPQVV---ILSHPAIGGFLTHCGWN-----SVLEAVSNGLPMVTWPFFADQFC 384 (476)
Q Consensus 319 ~~~--~---~~~~~-~~~~~nv~~~~~vpq~~---ll~~~~~~~~I~HgG~~-----s~~eal~~GvP~l~~P~~~DQ~~ 384 (476)
++- . .+..+ ...+.++.+..-+|+.+ +|..+.. -| |+=|| ++-|.+++|.=+|+---.+--.+
T Consensus 318 eD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i--Gv-h~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lD 394 (465)
T KOG1387|consen 318 EDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATI--GV-HTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLD 394 (465)
T ss_pred hhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhcccee--eh-hhhhhhhcchhHHHHHhcCceEEEeCCCCCcee
Confidence 210 1 11111 12378899988899775 5666555 22 33333 78899999975544322222222
Q ss_pred hHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHH
Q 039701 385 NEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMD-EGEERDERRRRAREYGETAKTA 453 (476)
Q Consensus 385 ~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~-~~~~~~~~r~~a~~l~~~~~~~ 453 (476)
+-.- . .|.....- ..|.++-+++|-+++. |++++..+|++|++-.+++.+.
T Consensus 395 IV~~---~--~G~~tGFl-------------a~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~ 446 (465)
T KOG1387|consen 395 IVTP---W--DGETTGFL-------------APTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGEL 446 (465)
T ss_pred eeec---c--CCccceee-------------cCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHH
Confidence 2111 1 12222222 3567788888888765 5555788999999988888876
No 190
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=69.88 E-value=38 Score=30.40 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=34.7
Q ss_pred EEEEEcCC--CccChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 039701 10 HFILFPFL--AQGHMIPMIDIARLLAQHGALVTIVTTPMNAARF 51 (476)
Q Consensus 10 ~vl~~~~p--~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~ 51 (476)
+|.+++++ +-|-..-.-+|+..|+++|+.|.++-..-...++
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNL 46 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNL 46 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhh
Confidence 57888887 7899999999999999999999999765544433
No 191
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=69.62 E-value=28 Score=36.67 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=22.3
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
.+++++|.|- +++.+|...++|+|++-
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 4449999884 57889999999999984
No 192
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=69.28 E-value=19 Score=32.36 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=40.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHh
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVI 55 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 55 (476)
+.+|++.+.++..|-....-++..|..+|++|+++...--.+.+.+..
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~ 135 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA 135 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH
Confidence 679999999999999999999999999999999998755444444443
No 193
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=68.75 E-value=51 Score=27.92 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=24.3
Q ss_pred cCCCccChHHHHHHHHHHHHCCCeEEEE
Q 039701 15 PFLAQGHMIPMIDIARLLAQHGALVTIV 42 (476)
Q Consensus 15 ~~p~~GHv~P~l~La~~L~~rGH~Vt~~ 42 (476)
+-+.-|-..=.+.|++.|+++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3456788888999999999999999986
No 194
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=67.39 E-value=3.1 Score=36.39 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCccChHHH------------HHHHHHHHHCCCeEEEEeCC
Q 039701 8 QLHFILFPFLAQGHMIPM------------IDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~------------l~La~~L~~rGH~Vt~~~~~ 45 (476)
.+||++.+-|+.=.+.|. ..||+++..|||+||++..+
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecC
Confidence 457777777777666664 48999999999999999987
No 195
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=67.34 E-value=70 Score=27.94 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=26.7
Q ss_pred EEEEEcC---C-CccChHHHH-HHHHHHHHCCCeEEEEeCCcch
Q 039701 10 HFILFPF---L-AQGHMIPMI-DIARLLAQHGALVTIVTTPMNA 48 (476)
Q Consensus 10 ~vl~~~~---p-~~GHv~P~l-~La~~L~~rGH~Vt~~~~~~~~ 48 (476)
||+|+-. | .+|=+.=++ .|+..|+++||+|++.|.....
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~ 46 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYY 46 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 5665532 2 356665554 6888888899999999886544
No 196
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=67.32 E-value=86 Score=30.89 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=36.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 53 (476)
=+++.-.|+.|-..=++.+|..++++|..|.+++.++..+.+..
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~ 127 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKL 127 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHH
Confidence 35677778999999999999999999999999988766554443
No 197
>PRK06321 replicative DNA helicase; Provisional
Probab=66.53 E-value=57 Score=33.31 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=34.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-HCCCeEEEEeCCcchhhh
Q 039701 11 FILFPFLAQGHMIPMIDIARLLA-QHGALVTIVTTPMNAARF 51 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~-~rGH~Vt~~~~~~~~~~~ 51 (476)
|++...|+.|-..-.+.+|...+ +.|+.|.|++-+.....+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 57788899999999999999987 459999999887655544
No 198
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=66.48 E-value=61 Score=28.13 Aligned_cols=106 Identities=12% Similarity=0.009 Sum_probs=55.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCe--EEEEe-CCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGAL--VTIVT-TPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCES 85 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~--Vt~~~-~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~ 85 (476)
+||+|+.+++. ..+..+...|.+++|+ |.++. .++.......... .++....+...
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~------~~~~~~~~~~~------------ 59 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK------NGIPAQVADEK------------ 59 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH------TTHHEEEHHGG------------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc------CCCCEEecccc------------
Confidence 58899876655 5566778899999998 55444 4333332222211 01222211100
Q ss_pred CCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC-chhHHHHhHcCCCcEEEecc
Q 039701 86 WDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCL-PWTVSSACKFNVPRIVFHGF 149 (476)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~-~~~~~~A~~~giP~v~~~~~ 149 (476)
. .........++.+.+++ .+||++|+-.+. .....+-......++-++++
T Consensus 60 -------~-----~~~~~~~~~~~~~~l~~--~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 60 -------N-----FQPRSENDEELLELLES--LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp -------G-----SSSHHHHHHHHHHHHHH--TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred -------C-----CCchHhhhhHHHHHHHh--hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 0 00011223456677777 899999887654 34455556666677765444
No 199
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=66.18 E-value=44 Score=35.05 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=52.2
Q ss_pred ecCCcccCCH-HHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHh-cCCCeEeec--------ccc--HHHhhhCCCce
Q 039701 285 CLGSLCDCST-RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERI-EGRGLLIRG--------WAP--QVVILSHPAIG 352 (476)
Q Consensus 285 s~GS~~~~~~-~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~nv~~~~--------~vp--q~~ll~~~~~~ 352 (476)
|.||...... ..-+.|++.|++.+.+.|+-+.+... ..+-+.+ ..+++.... +.- +..+-.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~--~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv- 79 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAI--LPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAV- 79 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCccc--HHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeE-
Confidence 4455544332 33556888899999998888877642 1222222 122333222 111 1112233444
Q ss_pred eeecccCh------hhHHHHHHcCCCEeccc
Q 039701 353 GFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 353 ~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
+++|.|- +++.+|-..++|+|++.
T Consensus 80 -~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 80 -CMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred -EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 8888775 47889999999999985
No 200
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=65.61 E-value=24 Score=30.45 Aligned_cols=46 Identities=13% Similarity=-0.039 Sum_probs=38.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhh
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIE 56 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 56 (476)
+++.-.|+.|-..=.+.++....+.|..|.+++.++..+.+.+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~ 47 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAE 47 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHH
Confidence 5778889999999999999999999999999999877766655433
No 201
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=64.63 E-value=4 Score=40.14 Aligned_cols=143 Identities=12% Similarity=0.183 Sum_probs=76.6
Q ss_pred HHHhCCCCeEEEEcCCCCCchhHHH-HhcCCCeEee-ccccHHHhhhCCCceeeecccChhhHHHHHHcCCCEecccccc
Q 039701 303 GLEATKKPFIWVIRPGDQAFEKFEE-RIEGRGLLIR-GWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFA 380 (476)
Q Consensus 303 a~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~nv~~~-~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~ 380 (476)
.+...++.+++..-+... ..... ....++++.. +..+..++|..+++ +||=-. ..+.|.++.+.|++....-.
T Consensus 224 ~~~~~~~~li~k~Hp~~~--~~~~~~~~~~~~i~~~~~~~~~~~ll~~aDi--LITDyS-Si~fD~~~l~KPiify~~D~ 298 (369)
T PF04464_consen 224 FLLKNNYVLIIKPHPNMK--KKFKDFKEDNSNIIFVSDNEDIYDLLAAADI--LITDYS-SIIFDFLLLNKPIIFYQPDL 298 (369)
T ss_dssp HHHTTTEEEEE--SHHHH--TT----TT-TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTT
T ss_pred HHhCCCcEEEEEeCchhh--hchhhhhccCCcEEECCCCCCHHHHHHhcCE--EEEech-hHHHHHHHhCCCEEEEeccH
Confidence 555666666665432210 01111 1124566654 45567899999999 999874 48889999999999877655
Q ss_pred cchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCCh
Q 039701 381 DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSS 460 (476)
Q Consensus 381 DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~ 460 (476)
|.+.. ..|.- .+..+ .-+++ ..-+.++|.++|..++++++ .++++-++..+++-. ..+|.++
T Consensus 299 ~~Y~~------~rg~~--~~~~~-~~pg~-----~~~~~~eL~~~i~~~~~~~~---~~~~~~~~~~~~~~~-~~Dg~s~ 360 (369)
T PF04464_consen 299 EEYEK------ERGFY--FDYEE-DLPGP-----IVYNFEELIEAIENIIENPD---EYKEKREKFRDKFFK-YNDGNSS 360 (369)
T ss_dssp TTTTT------TSSBS--S-TTT-SSSS------EESSHHHHHHHHTTHHHHHH---HTHHHHHHHHHHHST-T--S-HH
T ss_pred HHHhh------ccCCC--CchHh-hCCCc-----eeCCHHHHHHHHHhhhhCCH---HHHHHHHHHHHHhCC-CCCchHH
Confidence 55522 23333 22110 01111 13567999999999987652 455666666666654 3557776
Q ss_pred HHHHHHHH
Q 039701 461 YLNIKLLI 468 (476)
Q Consensus 461 ~~~~~~~~ 468 (476)
.+.++.++
T Consensus 361 eri~~~I~ 368 (369)
T PF04464_consen 361 ERIVNYIF 368 (369)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
No 202
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=64.60 E-value=11 Score=34.98 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=40.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhH
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 54 (476)
+..++|+-.|+.|-..=..+||.+|.++|+.|+|++.++....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 34799999999999999999999999889999999998766655554
No 203
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=64.51 E-value=12 Score=32.92 Aligned_cols=42 Identities=12% Similarity=-0.080 Sum_probs=33.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~ 49 (476)
..||++.-.|+.|=+.-...|+++|.++||+|.++.++...+
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 458888887776655557999999999999999999885443
No 204
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=64.50 E-value=95 Score=31.87 Aligned_cols=47 Identities=4% Similarity=-0.048 Sum_probs=40.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIE 56 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 56 (476)
-+++.-.|+.|-..=.+.++.+.+++|..|.+++.++..+.+....+
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~ 311 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAY 311 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHH
Confidence 47788888999999999999999999999999999888776666544
No 205
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=64.00 E-value=38 Score=30.80 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=26.4
Q ss_pred CCCeEEE-ecCCC-chhHHHHhHcCCCcEEEecchHH
Q 039701 118 PKPGCLI-SDVCL-PWTVSSACKFNVPRIVFHGFSCF 152 (476)
Q Consensus 118 ~~~D~vI-~D~~~-~~~~~~A~~~giP~v~~~~~~~~ 152 (476)
.-||+++ .|+.. --|..=|.++|||+|.++-+.+.
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~d 191 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCD 191 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCC
Confidence 4599655 77754 56888899999999998666533
No 206
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=63.80 E-value=32 Score=28.23 Aligned_cols=45 Identities=11% Similarity=0.021 Sum_probs=38.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 53 (476)
.+|++-+..+.+|-.----++..|.+.|++|......-..+.+-+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~ 46 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIK 46 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 489999999999999999999999999999999877554444433
No 207
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=63.65 E-value=21 Score=30.57 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=28.9
Q ss_pred HchHHHHHHHHhcCCCCeEEEecCCCchhH--H--HHhH-c-CCCcEEEecc
Q 039701 104 MLRLPLETLFKEIQPKPGCLISDVCLPWTV--S--SACK-F-NVPRIVFHGF 149 (476)
Q Consensus 104 ~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~--~--~A~~-~-giP~v~~~~~ 149 (476)
.....+.+++++ .+||+||+.+.++... . -.+. + ++|.+.+.|-
T Consensus 76 ~~~~~l~~~l~~--~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 76 LFARRLIRLLRE--FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHHhh--cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 345578888888 9999999999764333 1 1122 3 5777766554
No 208
>PRK08322 acetolactate synthase; Reviewed
Probab=63.63 E-value=40 Score=35.21 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=22.2
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
.+++++|.|- +++.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 4449999885 47889999999999985
No 209
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=63.07 E-value=82 Score=31.66 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=24.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
||.++..+.. .+.+++.|.+-|-+|..+++.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 6777776655 788888999999999988665
No 210
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=62.80 E-value=69 Score=32.32 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEE
Q 039701 107 LPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVF 146 (476)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~ 146 (476)
.++.+.+++ .+||++|.... ...+|+++|||++.+
T Consensus 367 ~e~~~~i~~--~~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 367 WHLRSLLFT--EPVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred HHHHHHHhh--cCCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 355666777 79999999864 578999999999874
No 211
>PRK05595 replicative DNA helicase; Provisional
Probab=62.72 E-value=50 Score=33.41 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=34.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-HCCCeEEEEeCCcchhhhh
Q 039701 11 FILFPFLAQGHMIPMIDIARLLA-QHGALVTIVTTPMNAARFQ 52 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~-~rGH~Vt~~~~~~~~~~~~ 52 (476)
+++...|+.|-..-.+.+|..++ ++|+.|.|++.+...+.+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHH
Confidence 56788899999999999999876 6699999998877655443
No 212
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=62.09 E-value=63 Score=32.54 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=21.6
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEecc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTW 376 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~ 376 (476)
.+++++|.|- +.+.+|.+.++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 3449999885 4777999999999999
No 213
>PRK08760 replicative DNA helicase; Provisional
Probab=61.84 E-value=38 Score=34.64 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=34.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHH-CCCeEEEEeCCcchhhh
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQ-HGALVTIVTTPMNAARF 51 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~-rGH~Vt~~~~~~~~~~~ 51 (476)
+++...|+.|-..-.+.+|...+. .|+.|.|++.+.....+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 677888999999999999998874 59999999887665533
No 214
>PRK08506 replicative DNA helicase; Provisional
Probab=61.76 E-value=69 Score=32.76 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=36.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 52 (476)
=+++...|+.|-..-.+.+|...++.|+.|.|++.+.....+.
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 3677888999999999999999988999999998877655443
No 215
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=61.24 E-value=41 Score=35.31 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=22.1
Q ss_pred ceeeecccChh------hHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGWN------SVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~~------s~~eal~~GvP~l~~P 377 (476)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33499998865 6789999999999984
No 216
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=61.16 E-value=33 Score=31.09 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=36.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhH
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 54 (476)
-+++...|+.|-..-...++....++|..|.|++.+...+.+.+.
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~ 71 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ 71 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH
Confidence 366677889999999999998888899999999987665544443
No 217
>PRK11823 DNA repair protein RadA; Provisional
Probab=59.44 E-value=1.2e+02 Score=30.76 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=37.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 53 (476)
=+++.-.|+.|-..=++.++..++++|++|.+++.++..+.+..
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ 125 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKL 125 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHH
Confidence 46777788999999999999999999999999998876665543
No 218
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=59.32 E-value=1.1e+02 Score=25.96 Aligned_cols=97 Identities=10% Similarity=-0.071 Sum_probs=57.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEE---EeCC--cchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTI---VTTP--MNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCE 84 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~---~~~~--~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~ 84 (476)
-|.+++.++.|-....+.+|-+.+.+|++|.| +-.. .....+-+. . .++.+...... ..+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~---l----~~v~~~~~g~~-------~~~~ 69 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALER---L----PNIEIHRMGRG-------FFWT 69 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHh---C----CCcEEEECCCC-------CccC
Confidence 47788889999999999999999999999998 4332 111111111 1 14666653311 0011
Q ss_pred CCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC
Q 039701 85 SWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCL 129 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~ 129 (476)
. . + ...-............+.+++ .++|+||.|-..
T Consensus 70 ~----~--~-~~~~~~~a~~~~~~a~~~~~~--~~~dLlVLDEi~ 105 (159)
T cd00561 70 T----E--N-DEEDIAAAAEGWAFAKEAIAS--GEYDLVILDEIN 105 (159)
T ss_pred C----C--C-hHHHHHHHHHHHHHHHHHHhc--CCCCEEEEechH
Confidence 0 0 1 112222223344455556665 799999999875
No 219
>PRK09165 replicative DNA helicase; Provisional
Probab=59.29 E-value=66 Score=33.12 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=34.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHC---------------CCeEEEEeCCcchhhhhh
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQH---------------GALVTIVTTPMNAARFQN 53 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~r---------------GH~Vt~~~~~~~~~~~~~ 53 (476)
+++...|+.|-..-.+.+|...+.+ |..|.|++.+...+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 6778889999999999999988753 789999988876654433
No 220
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=59.18 E-value=88 Score=24.72 Aligned_cols=87 Identities=21% Similarity=0.122 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHHHHH
Q 039701 21 HMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFA 100 (476)
Q Consensus 21 Hv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (476)
+-.-++.+|+.|.+.|.+|. +++...+.+.+. ++....+.. ..+. . ..+
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~---------gi~~~~v~~------~~~~-~------~~~------- 59 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN---------GIPVTPVAW------PSEE-P------QND------- 59 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc---------CCCceEeee------ccCC-C------CCC-------
Confidence 55678899999999999883 455555545444 343333210 0000 0 000
Q ss_pred HHHHchHHHHHHHHhcCCCCeEEEecCC---------CchhHHHHhHcCCCcEE
Q 039701 101 AIEMLRLPLETLFKEIQPKPGCLISDVC---------LPWTVSSACKFNVPRIV 145 (476)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~D~vI~D~~---------~~~~~~~A~~~giP~v~ 145 (476)
...+.+++++ .++|+||.-+. .......|-.+|||+++
T Consensus 60 -----~~~i~~~i~~--~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 -----KPSLRELLAE--GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred -----chhHHHHHHc--CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 1456777777 89999998442 23456889999999974
No 221
>PRK05636 replicative DNA helicase; Provisional
Probab=58.97 E-value=43 Score=34.53 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=33.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-HCCCeEEEEeCCcchhhh
Q 039701 11 FILFPFLAQGHMIPMIDIARLLA-QHGALVTIVTTPMNAARF 51 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~-~rGH~Vt~~~~~~~~~~~ 51 (476)
|++...|+.|-..-.+.+|...+ ++|..|.|++.+.....+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 57788899999999999998876 568999999887655444
No 222
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=58.28 E-value=1e+02 Score=25.21 Aligned_cols=39 Identities=18% Similarity=0.038 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCc
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~ 46 (476)
++||++...+..+|-..---++..|...|.+|.......
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~ 40 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQ 40 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCC
Confidence 789999999999999999999999999999999886643
No 223
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=58.27 E-value=36 Score=37.01 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=66.2
Q ss_pred eEeeccccHHH---hhhCCCceeeecc---cChh-hHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCC
Q 039701 334 LLIRGWAPQVV---ILSHPAIGGFLTH---CGWN-SVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPS 406 (476)
Q Consensus 334 v~~~~~vpq~~---ll~~~~~~~~I~H---gG~~-s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~ 406 (476)
+++.+++++.+ ++..+++ ++.- -|.| +..|++++|+|-..+|+..+--.-+..+ .-|..+++.
T Consensus 344 ~~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P~---- 413 (726)
T PRK14501 344 HYFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNPN---- 413 (726)
T ss_pred EEEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECCC----
Confidence 34556778664 6777887 6653 3544 7789999987633333333222222222 226666554
Q ss_pred CcccccCCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHh
Q 039701 407 LADEERNGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 474 (476)
Q Consensus 407 ~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~ 474 (476)
+.++++++|.++|+++. ++.+++.+++.+..+ ..+...-+++|++.+.+.
T Consensus 414 -----------d~~~la~ai~~~l~~~~--~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 -----------DIEGIAAAIKRALEMPE--EEQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred -----------CHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 78999999999998642 123333333333322 355667777777776653
No 224
>PRK05920 aromatic acid decarboxylase; Validated
Probab=57.69 E-value=16 Score=32.40 Aligned_cols=44 Identities=16% Similarity=0.062 Sum_probs=35.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 52 (476)
.+||++.-.++.+= +=...+.+.|.+.||+|.++.+......+.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 35888887776665 688999999999999999999886555444
No 225
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=57.54 E-value=31 Score=34.74 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
++|||++-.+++-| +|++.|++.++...+++.|
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEEC
Confidence 57899999998887 6899999998665555544
No 226
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=57.18 E-value=57 Score=27.39 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=30.1
Q ss_pred cEEEEEcCC-------CccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 9 LHFILFPFL-------AQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 9 ~~vl~~~~p-------~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
+|++|+-.| ++.|+.-+++-|.+|+++|.+..++.+-
T Consensus 44 KKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV 87 (171)
T KOG0541|consen 44 KKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV 87 (171)
T ss_pred ceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec
Confidence 467776555 6789999999999999999997766553
No 227
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=56.72 E-value=26 Score=32.14 Aligned_cols=102 Identities=23% Similarity=0.301 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHHHHH
Q 039701 21 HMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFA 100 (476)
Q Consensus 21 Hv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (476)
|---+..|++.|+ .+++|+++++.....-+...+... ..++...+. ...-.....|.
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~----~Plr~~~~~---------~~~~av~GTPa--------- 68 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLH----EPLRVRQVD---------NGAYAVNGTPA--------- 68 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccc----cCceeeEec---------cceEEecCChH---------
Confidence 3445678888888 999999999885544332221100 012222211 00000001111
Q ss_pred HHHHchHHHHHHHHhcCCCCeEEEecCC----------C---chhHHHHhHcCCCcEEEecc
Q 039701 101 AIEMLRLPLETLFKEIQPKPGCLISDVC----------L---PWTVSSACKFNVPRIVFHGF 149 (476)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~D~vI~D~~----------~---~~~~~~A~~~giP~v~~~~~ 149 (476)
+-..-.+..++++ .+||+||+-.. + .++++=|..+|||.|.++..
T Consensus 69 --DCV~lal~~l~~~--~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 69 --DCVILGLNELLKE--PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred --HHHHHHHHHhccC--CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 1112345666666 56999986432 1 24566677889999987655
No 228
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=56.72 E-value=66 Score=33.73 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.4
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
.+++++|.|- +++++|...++|+|++-
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4449999885 47889999999999984
No 229
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=56.62 E-value=1e+02 Score=30.84 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=34.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-HCCCeEEEEeCCcchhhh
Q 039701 11 FILFPFLAQGHMIPMIDIARLLA-QHGALVTIVTTPMNAARF 51 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~-~rGH~Vt~~~~~~~~~~~ 51 (476)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+.....+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 67788899999999999998887 679999999987655544
No 230
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=56.41 E-value=1e+02 Score=30.85 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=25.2
Q ss_pred HHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEe
Q 039701 111 TLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFH 147 (476)
Q Consensus 111 ~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~ 147 (476)
..+++ .+||++|.. ..+..+|+++|||++.+.
T Consensus 344 ~~~~~--~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEE--YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhh--cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 34445 799999988 346779999999999853
No 231
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=56.25 E-value=75 Score=28.42 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=26.5
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHHCCCeEEEEe
Q 039701 11 FILFPF-LAQGHMIPMIDIARLLAQHGALVTIVT 43 (476)
Q Consensus 11 vl~~~~-p~~GHv~P~l~La~~L~~rGH~Vt~~~ 43 (476)
|.+.+. ..-|-..-.+.|++.|+++|++|.++-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 344433 367999999999999999999998875
No 232
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=56.25 E-value=73 Score=32.06 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEE
Q 039701 107 LPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVF 146 (476)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~ 146 (476)
.++.+.+++ .+||+||.+... ..+|+++|+|++.+
T Consensus 361 ~el~~~i~~--~~pdliig~~~~---~~~a~~~~ip~i~~ 395 (428)
T cd01965 361 WDLESLAKE--EPVDLLIGNSHG---RYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHHhhc--cCCCEEEECchh---HHHHHhcCCCEEEe
Confidence 355667777 799999999753 67999999999874
No 233
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=55.49 E-value=67 Score=25.80 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=17.2
Q ss_pred HHHHchHHHHHHHHhcCCCCeEEEecC
Q 039701 101 AIEMLRLPLETLFKEIQPKPGCLISDV 127 (476)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~D~vI~D~ 127 (476)
........+.+++++ .+||+|++-.
T Consensus 84 ~~~~~~~~l~~~i~~--~~p~~V~t~~ 108 (128)
T PF02585_consen 84 SWEELVRDLEDLIRE--FRPDVVFTPD 108 (128)
T ss_dssp HHHHHHHHHHHHHHH--H-ESEEEEE-
T ss_pred cHHHHHHHHHHHHHH--cCCCEEEECC
Confidence 334566778888888 8999988654
No 234
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=55.30 E-value=77 Score=33.44 Aligned_cols=78 Identities=13% Similarity=0.001 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeec--------cccHHHhhhCCCceeeecccCh------hhH
Q 039701 298 IELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRG--------WAPQVVILSHPAIGGFLTHCGW------NSV 363 (476)
Q Consensus 298 ~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~--------~vpq~~ll~~~~~~~~I~HgG~------~s~ 363 (476)
+.|++.|++.+++.|+-+.+... ..+-+.+...++.+.. +.-...-......+++++|.|- +.+
T Consensus 10 ~~l~~~L~~~GV~~vFGvpG~~~--~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi 87 (588)
T PRK07525 10 EAFVETLQAHGITHAFGIIGSAF--MDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAV 87 (588)
T ss_pred HHHHHHHHHcCCCEEEEeCCCch--HHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHH
Confidence 44666677777777776655542 1111111111222111 1111111122234449999885 477
Q ss_pred HHHHHcCCCEeccc
Q 039701 364 LEAVSNGLPMVTWP 377 (476)
Q Consensus 364 ~eal~~GvP~l~~P 377 (476)
.+|...++|+|++.
T Consensus 88 ~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 88 ATAYWAHTPVVLVT 101 (588)
T ss_pred HHHhhcCCCEEEEe
Confidence 89999999999996
No 235
>PRK11519 tyrosine kinase; Provisional
Probab=55.13 E-value=41 Score=36.46 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=31.5
Q ss_pred CcEEEEEcC--CCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 8 QLHFILFPF--LAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 8 ~~~vl~~~~--p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
+.|+++++. |+-|-..-..+||..|++.|++|.++-..
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 557777766 47788899999999999999999998543
No 236
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=55.07 E-value=2e+02 Score=27.58 Aligned_cols=86 Identities=13% Similarity=0.151 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHHHHHHHH
Q 039701 24 PMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIE 103 (476)
Q Consensus 24 P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (476)
-+..|++.|.++|.+|.++.++...+..+..... . +....+. .. .
T Consensus 195 ~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~-------~--------------~~~~~~l---~g-----------~ 239 (334)
T TIGR02195 195 HYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEAL-------L--------------PGELRNL---AG-----------E 239 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHh-------C--------------CcccccC---CC-----------C
Confidence 5789999999889999998887666554443210 0 0000000 00 0
Q ss_pred HchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecch
Q 039701 104 MLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFS 150 (476)
Q Consensus 104 ~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~ 150 (476)
....++..+++ +.|++|+.-. +...+|..+|+|.|.++..+
T Consensus 240 ~sL~el~ali~----~a~l~I~~DS--Gp~HlAaA~~~P~i~lfG~t 280 (334)
T TIGR02195 240 TSLDEAVDLIA----LAKAVVTNDS--GLMHVAAALNRPLVALYGST 280 (334)
T ss_pred CCHHHHHHHHH----hCCEEEeeCC--HHHHHHHHcCCCEEEEECCC
Confidence 01234455554 5899996543 67999999999999976643
No 237
>PRK05858 hypothetical protein; Provisional
Probab=55.07 E-value=78 Score=32.98 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=21.6
Q ss_pred eeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 352 GGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 352 ~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
++++.|.|- +++++|-..++|+|++.
T Consensus 69 gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 69 GVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred eEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 338888884 58889999999999985
No 238
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=54.98 E-value=1.8e+02 Score=26.95 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=33.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMN 47 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~ 47 (476)
=+++.-.|+.|-..-++.++...+++|..|.|++.+..
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 46778888999999999999999889999999998753
No 239
>PRK10490 sensor protein KdpD; Provisional
Probab=54.59 E-value=23 Score=39.45 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=38.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeC-CcchhhhhhH
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT-PMNAARFQNV 54 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~-~~~~~~~~~~ 54 (476)
++||.+=..|+-|-.+-++.-|++|+++|++|.+-.- +.........
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~h~r~~t~~~ 71 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVETHGRKETAAL 71 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeCCCCHHHHHH
Confidence 8999999999999999999999999999999987543 3334433443
No 240
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=54.56 E-value=71 Score=33.45 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=22.7
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEecccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
.+++++|.|- +++++|...++|+|++--
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g 98 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTG 98 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 4449999885 478899999999999943
No 241
>PRK00784 cobyric acid synthase; Provisional
Probab=54.53 E-value=1.2e+02 Score=31.29 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=28.7
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 10 HFILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 10 ~vl~~~~p-~~GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
++.+.... .-|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 46666554 479999999999999999999987744
No 242
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=54.12 E-value=1.1e+02 Score=30.67 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=35.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHH-CCCeEEEEeCCcchhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQ-HGALVTIVTTPMNAARF 51 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~-rGH~Vt~~~~~~~~~~~ 51 (476)
=+++...|+.|-..-.+.+|..++. .|+.|.|++.+.....+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 3677888899999999999999875 59999999988765554
No 243
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=53.91 E-value=92 Score=32.59 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=22.1
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
.+++++|.|- +.+.+|...++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4449999885 47889999999999883
No 244
>PRK07773 replicative DNA helicase; Validated
Probab=53.67 E-value=61 Score=36.14 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=35.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhhh
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQH-GALVTIVTTPMNAARFQN 53 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~~~ 53 (476)
+++..-|+.|-..-.+++|...+.+ |..|.|++-+.....+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 7788889999999999999998754 889999988776554433
No 245
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=53.48 E-value=1.6e+02 Score=25.92 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcc---hhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMN---AARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCE 84 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~---~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~ 84 (476)
+-.|.+++..+.|-....+.+|-+.+.+|++|.++---.. .... ..+.. -.++.+...+.... +.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~-~~l~~----l~~v~~~~~g~~~~-------~~ 89 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGER-NLLEF----GGGVEFHVMGTGFT-------WE 89 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHH-HHHhc----CCCcEEEECCCCCc-------cc
Confidence 4579999999999999999999999999999998733111 1111 11111 12477766432100 11
Q ss_pred CCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC
Q 039701 85 SWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCL 129 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~ 129 (476)
. . + ...-...........++.+.+ .++|+||.|-..
T Consensus 90 ~----~--~-~~e~~~~~~~~~~~a~~~l~~--~~ydlvVLDEi~ 125 (191)
T PRK05986 90 T----Q--D-RERDIAAAREGWEEAKRMLAD--ESYDLVVLDELT 125 (191)
T ss_pred C----C--C-cHHHHHHHHHHHHHHHHHHhC--CCCCEEEEehhh
Confidence 1 0 1 112223333444555566666 899999999876
No 246
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=53.28 E-value=1.3e+02 Score=29.11 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=61.4
Q ss_pred cEEEEEcCCCc-----cChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCC
Q 039701 9 LHFILFPFLAQ-----GHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGC 83 (476)
Q Consensus 9 ~~vl~~~~p~~-----GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~ 83 (476)
+.|+|.|..+. --..-+..|++.|.++|.+|.++.++...+..++.... +. ...
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~-------~~--------------~~~ 234 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG-------LP--------------NAV 234 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh-------cC--------------Ccc
Confidence 56677666233 13446889999999999999998888555555554221 10 000
Q ss_pred CCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecch
Q 039701 84 ESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFS 150 (476)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~ 150 (476)
. ..... ...++..++ ...|++|+.-. +...+|..+|.|+|.++..+
T Consensus 235 ~----l~~k~-----------sL~e~~~li----~~a~l~I~~DS--g~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 235 I----LAGKT-----------SLEELAALI----AGADLVIGNDS--GPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred c----cCCCC-----------CHHHHHHHH----hcCCEEEccCC--hHHHHHHHcCCCEEEEECCC
Confidence 0 00001 122334444 36888886543 67899999999999987554
No 247
>PRK11269 glyoxylate carboligase; Provisional
Probab=53.00 E-value=74 Score=33.59 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=22.4
Q ss_pred ceeeecccC------hhhHHHHHHcCCCEecccc
Q 039701 351 IGGFLTHCG------WNSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 351 ~~~~I~HgG------~~s~~eal~~GvP~l~~P~ 378 (476)
.+++++|.| .+.+++|...++|+|++.-
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G 102 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCITG 102 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEec
Confidence 444777777 6789999999999999843
No 248
>PRK12342 hypothetical protein; Provisional
Probab=52.35 E-value=27 Score=32.25 Aligned_cols=40 Identities=10% Similarity=-0.068 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCCeEEEecCCC-ch-----hHHHHhHcCCCcEEEecc
Q 039701 108 PLETLFKEIQPKPGCLISDVCL-PW-----TVSSACKFNVPRIVFHGF 149 (476)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~-~~-----~~~~A~~~giP~v~~~~~ 149 (476)
.|...++. .+||+|++-..+ .. +..+|+.+|+|++.+...
T Consensus 100 ~La~~i~~--~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEK--IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHH--hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 45556666 579999976643 23 689999999999996544
No 249
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=52.25 E-value=31 Score=32.45 Aligned_cols=76 Identities=18% Similarity=0.261 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHc--
Q 039701 292 CSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSN-- 369 (476)
Q Consensus 292 ~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~-- 369 (476)
.+.+..+.|.+|+.+.+.+.||...++.. -..+.++++...+-.+|.. +|=+.-..+++-+++.
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g------------a~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~~l~~~~ 111 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYG------------ANRLLPYLDYDLIRANPKI--FVGYSDITALHLALYAKT 111 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCC------------HHHhhhhCCHHHHhhCCeE--EEEecHHHHHHHHHHHhc
Confidence 45677788999999999999999988752 2333466777777778888 8888888888888764
Q ss_pred CCCEeccccccc
Q 039701 370 GLPMVTWPFFAD 381 (476)
Q Consensus 370 GvP~l~~P~~~D 381 (476)
|++.+.=|...+
T Consensus 112 g~~t~hGp~~~~ 123 (282)
T cd07025 112 GLVTFHGPMLAS 123 (282)
T ss_pred CceEEECccccc
Confidence 788777776543
No 250
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=52.17 E-value=17 Score=33.03 Aligned_cols=36 Identities=22% Similarity=0.133 Sum_probs=26.1
Q ss_pred EEEEEcCCCccChHHH------------HHHHHHHHHCCCeEEEEeCC
Q 039701 10 HFILFPFLAQGHMIPM------------IDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~------------l~La~~L~~rGH~Vt~~~~~ 45 (476)
||++.+-|+.=.+.|. .+||++|.++||+|+++...
T Consensus 2 ~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 2 KILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred EEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 5666666665555553 37889999999999998744
No 251
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=52.02 E-value=40 Score=26.84 Aligned_cols=44 Identities=14% Similarity=-0.018 Sum_probs=35.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhH
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 54 (476)
++..+.++..|......++..|.++|++|.++......+.+.+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~ 45 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEA 45 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHH
Confidence 67788899999999999999999999999999765544444443
No 252
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=51.82 E-value=84 Score=27.65 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=26.1
Q ss_pred CCCCeEEE-ecCCC-chhHHHHhHcCCCcEEEecch
Q 039701 117 QPKPGCLI-SDVCL-PWTVSSACKFNVPRIVFHGFS 150 (476)
Q Consensus 117 ~~~~D~vI-~D~~~-~~~~~~A~~~giP~v~~~~~~ 150 (476)
...||+|| .|... ..+..=|.++|||.|.++-+.
T Consensus 125 ~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 125 FRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 36899776 55533 577889999999999986654
No 253
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=51.63 E-value=23 Score=31.24 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=28.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAAR 50 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~ 50 (476)
|||+.-=-+. +---+..|++.|.+.||+|+++++.....-
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 2 RILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp EEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 4555544444 445678999999878899999998765443
No 254
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=51.48 E-value=20 Score=31.42 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=33.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNA 48 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~ 48 (476)
||++.-.|+.|=+.-.+.+.++|.+.|++|+++.++...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 688888888888888889999999999999999887543
No 255
>PRK05748 replicative DNA helicase; Provisional
Probab=51.33 E-value=1.3e+02 Score=30.53 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=35.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHH-HCCCeEEEEeCCcchhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLA-QHGALVTIVTTPMNAARF 51 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~-~rGH~Vt~~~~~~~~~~~ 51 (476)
=+++...|+.|-..-.+.+|...+ ++|+.|.|++.+...+.+
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 377888899999999999999987 459999999887765544
No 256
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=51.30 E-value=55 Score=28.26 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=57.9
Q ss_pred cChHHHHHHHHHH-HHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcc--cCC---CCCCCCCC---CCC
Q 039701 20 GHMIPMIDIARLL-AQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQE--VGL---PEGCESWD---KLP 90 (476)
Q Consensus 20 GHv~P~l~La~~L-~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~--~~~---~~~~~~~~---~~~ 90 (476)
+.+.-.+..|+.| .+.|.+|.+.-.. ....+++.. ++..+.++.+..+ ..+ ........ ...
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~--------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~ 87 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHV--------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPN 87 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC---------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhC--------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccc
Confidence 5677788999999 7889999887543 333444431 4666666654443 000 01000000 000
Q ss_pred CcCcHHHHHHHHH--------HchHHHHHHHHhc-CCCCeEEEecCCCchhHHHHhHcCCCcEEEecchHH
Q 039701 91 SMALLPKFFAAIE--------MLRLPLETLFKEI-QPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSCF 152 (476)
Q Consensus 91 ~~~~~~~~~~~~~--------~~~~~l~~~l~~~-~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~~ 152 (476)
....+..+...+. ....++...++.. ..++|+||.+.. +..+|+++|+|++.+.+...+
T Consensus 88 ~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 88 IIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp -SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred ccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 1112333333331 1122333333221 158999999964 578999999999987665433
No 257
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=51.07 E-value=38 Score=32.05 Aligned_cols=70 Identities=13% Similarity=0.085 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHc----C
Q 039701 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSN----G 370 (476)
Q Consensus 295 ~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~----G 370 (476)
+.+..+++.+++.+..+++...... ... ..+. ...+..++-..+++ +|+.||-||+.+++.. +
T Consensus 21 e~~~~i~~~L~~~g~~v~v~~~~~~----~~~----~~~~---~~~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~~~~~ 87 (291)
T PRK02155 21 EPLESLAAFLAKRGFEVVFEADTAR----NIG----LTGY---PALTPEEIGARADL--AVVLGGDGTMLGIGRQLAPYG 87 (291)
T ss_pred HHHHHHHHHHHHCCCEEEEecchhh----hcC----cccc---cccChhHhccCCCE--EEEECCcHHHHHHHHHhcCCC
Confidence 4456677778887877666432111 000 0000 01122333335677 9999999999999774 6
Q ss_pred CCEeccc
Q 039701 371 LPMVTWP 377 (476)
Q Consensus 371 vP~l~~P 377 (476)
+|++.+-
T Consensus 88 ~pilGIn 94 (291)
T PRK02155 88 VPLIGIN 94 (291)
T ss_pred CCEEEEc
Confidence 6777654
No 258
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=50.64 E-value=65 Score=30.95 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=26.2
Q ss_pred CCCeEEE-ecCCC-chhHHHHhHcCCCcEEEecchH
Q 039701 118 PKPGCLI-SDVCL-PWTVSSACKFNVPRIVFHGFSC 151 (476)
Q Consensus 118 ~~~D~vI-~D~~~-~~~~~~A~~~giP~v~~~~~~~ 151 (476)
..||+|| .|... ..+..=|.++|||.|.++-+.+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 5799766 56643 6788999999999999865543
No 259
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=50.63 E-value=2.7e+02 Score=27.89 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=38.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhh
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIE 56 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 56 (476)
--|+++-.=+.|-..-+-.||+.|.++|+.|.+++...++...-..+.
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~ 148 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLK 148 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHH
Confidence 445555556889999999999999999999999998877665544443
No 260
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=50.63 E-value=22 Score=31.04 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=34.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 52 (476)
||++.-.++.|=+. ...+.+.|.++|++|.++.++...+.+.
T Consensus 3 ~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 3 NILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 78888888777665 7999999999999999998886555444
No 261
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=50.58 E-value=1.8e+02 Score=29.50 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=36.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 52 (476)
=+++.-.|+.|-..=++.++..+.++|+.|.|++.++..+.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 3677778899999999999999999999999999876655443
No 262
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=50.34 E-value=1.3e+02 Score=29.85 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=68.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCC
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLP 90 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (476)
|++---|+.|--.=+++++..|+++| .|.+++.++....+.--..+.. + +. .
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~-----~--------------~~--~------ 147 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLG-----L--------------PT--N------ 147 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhC-----C--------------Cc--c------
Confidence 66777889999999999999999999 9999999887665544322211 1 00 0
Q ss_pred CcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC-ch--------------------hHHHHhHcCCCcEEEecc
Q 039701 91 SMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCL-PW--------------------TVSSACKFNVPRIVFHGF 149 (476)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~-~~--------------------~~~~A~~~giP~v~~~~~ 149 (476)
.+.-..+...+.+.+.+++ .+||++|.|..- .+ ...+|+..||+.+.+.+.
T Consensus 148 ------~l~l~aEt~~e~I~~~l~~--~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 148 ------NLYLLAETNLEDIIAELEQ--EKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred ------ceEEehhcCHHHHHHHHHh--cCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 0001111233455566666 899999999832 11 125778888888887665
Q ss_pred h
Q 039701 150 S 150 (476)
Q Consensus 150 ~ 150 (476)
+
T Consensus 220 T 220 (456)
T COG1066 220 T 220 (456)
T ss_pred c
Confidence 4
No 263
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=50.34 E-value=15 Score=31.82 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=22.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
||.++. +.|++- -.|.++..+|||+||.++-.
T Consensus 2 KIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 2 KIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred eEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeC
Confidence 555553 344443 36789999999999999864
No 264
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=49.95 E-value=36 Score=34.60 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=43.9
Q ss_pred hHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCChhhHHHHH
Q 039701 362 SVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEGEERDERRR 441 (476)
Q Consensus 362 s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~~~~~~~r~ 441 (476)
++.||+++|+|++++ ++..=+..+ +..--|...++. .-....+..++.++.+|++...++.+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~dp~-------------~e~~~~~a~~~~kl~~~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLIDPG-------------QEAVAELADALLKLRRDPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceeeCCc-------------hHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 788999999999986 343444455 355556666554 34556899999999999954444444
Q ss_pred HH
Q 039701 442 RA 443 (476)
Q Consensus 442 ~a 443 (476)
+-
T Consensus 443 ~G 444 (495)
T KOG0853|consen 443 NG 444 (495)
T ss_pred HH
Confidence 43
No 265
>PRK09620 hypothetical protein; Provisional
Probab=49.85 E-value=22 Score=32.34 Aligned_cols=38 Identities=16% Similarity=-0.038 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCccChHHH------------HHHHHHHHHCCCeEEEEeCC
Q 039701 8 QLHFILFPFLAQGHMIPM------------IDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~------------l~La~~L~~rGH~Vt~~~~~ 45 (476)
.++|++.+-|+.=.+.|. ..||++|.++|++|+++..+
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 357887776665554443 47999999999999999754
No 266
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=49.82 E-value=13 Score=31.46 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=26.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCc
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~ 46 (476)
||.++-.|.+|+ ++|..|+++||+|++.+...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 567777777775 79999999999999998864
No 267
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=49.73 E-value=1.6e+02 Score=24.79 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=76.8
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHH---HhcCCCeEeeccccHHHhhhCCCceeeecc
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEE---RIEGRGLLIRGWAPQVVILSHPAIGGFLTH 357 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~nv~~~~~vpq~~ll~~~~~~~~I~H 357 (476)
.|-|-+||.+ +.+.++..++.|++.++.+-..+-+-..+|+...+ .....++. ++|.-
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~-----------------viIAg 64 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVK-----------------VIIAG 64 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCe-----------------EEEec
Confidence 3677789875 45677778888888887775444333333544332 11223332 36655
Q ss_pred cChh---hHHHHHHcCCCEecccccc---cchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhc
Q 039701 358 CGWN---SVLEAVSNGLPMVTWPFFA---DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMD 431 (476)
Q Consensus 358 gG~~---s~~eal~~GvP~l~~P~~~---DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~ 431 (476)
.|.- .-+-|..-=+|++.+|... +.-+--.-++ +---|+-+-.- ++. ...++.-|...|-.+ .
T Consensus 65 AGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiV-QMP~GvPVaTv-----aIg----~a~NAallAa~ILa~-~ 133 (162)
T COG0041 65 AGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIV-QMPAGVPVATV-----AIG----NAANAALLAAQILAI-K 133 (162)
T ss_pred CcchhhcchhhhhcCCCCeEeccCccccccchHHHHHHh-cCCCCCeeEEE-----eec----chhhHHHHHHHHHcC-C
Confidence 4421 1223445578999999963 2223333343 44444322111 000 124455555544443 4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHh
Q 039701 432 EGEERDERRRRAREYGETAKTAIE 455 (476)
Q Consensus 432 ~~~~~~~~r~~a~~l~~~~~~~~~ 455 (476)
|+ +++++.+++.+..++.+.
T Consensus 134 d~----~l~~kl~~~r~~~~~~V~ 153 (162)
T COG0041 134 DP----ELAEKLAEFREAQTEEVL 153 (162)
T ss_pred CH----HHHHHHHHHHHHHHHHHH
Confidence 56 899999998888887643
No 268
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=49.39 E-value=1.9e+02 Score=25.78 Aligned_cols=46 Identities=7% Similarity=0.038 Sum_probs=37.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVI 55 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 55 (476)
-+++...|+.|-..-++.++....++|+.|.+++.+...+.+.+..
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~ 63 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYA 63 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHH
Confidence 4566777899999999999998888899999999987766665543
No 269
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=48.84 E-value=79 Score=29.13 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCeEEE--ecCCC----chhHHHHhHcCCCcEEE
Q 039701 107 LPLETLFKEIQPKPGCLI--SDVCL----PWTVSSACKFNVPRIVF 146 (476)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI--~D~~~----~~~~~~A~~~giP~v~~ 146 (476)
+.+.+++++ .++++|| +.+|. --+..+|+.+|||++.|
T Consensus 55 ~~l~~~l~~--~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 55 EGLAAYLRE--EGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred HHHHHHHHH--CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 466778888 8999988 33332 12468999999999996
No 270
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=48.73 E-value=92 Score=32.66 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=23.1
Q ss_pred hCCCceeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 347 SHPAIGGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 347 ~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
.++.+ +++|.|- +++.+|...++|+|++-
T Consensus 69 g~~~v--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 69 GKVGV--CVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred CCCeE--EEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 34555 9999885 47889999999999984
No 271
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=48.43 E-value=2.1e+02 Score=25.93 Aligned_cols=45 Identities=13% Similarity=-0.065 Sum_probs=36.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhH
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 54 (476)
-+++...|+.|-..=.+.++.+-+++|..|.|++.++..+.+.+.
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~ 67 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRN 67 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHH
Confidence 477888889999999999888877899999999988766655443
No 272
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=48.12 E-value=1e+02 Score=32.32 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=21.9
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
.+++++|.|- +.+.+|...++|||++-
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 3348888885 47789999999999995
No 273
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=48.10 E-value=23 Score=36.00 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=33.9
Q ss_pred CcEEEEEcCCCccChHHHH------------HHHHHHHHCCCeEEEEeCC
Q 039701 8 QLHFILFPFLAQGHMIPMI------------DIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l------------~La~~L~~rGH~Vt~~~~~ 45 (476)
.+||++.+-|+.=.+.|.. .||+++..+|++||+++.+
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4699999999998888875 8999999999999999976
No 274
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=48.03 E-value=2.6e+02 Score=26.79 Aligned_cols=116 Identities=14% Similarity=0.080 Sum_probs=64.1
Q ss_pred ceEEEecCCcc-c--CCHHHHHH----HHHHHHhCCCCeEEEEcCCCCCchhHHH----Hhc-CCCeEeecc---ccHHH
Q 039701 280 SAVYVCLGSLC-D--CSTRQLIE----LGLGLEATKKPFIWVIRPGDQAFEKFEE----RIE-GRGLLIRGW---APQVV 344 (476)
Q Consensus 280 ~vv~vs~GS~~-~--~~~~~~~~----i~~a~~~~~~~~i~~~~~~~~~~~~~~~----~~~-~~nv~~~~~---vpq~~ 344 (476)
+.+-|-.|.-. . .+.+.... +.+.++..+..++++.+... +..+.. ..+ ...+.+.+- =|+..
T Consensus 147 p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRT--p~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~ 224 (311)
T PF06258_consen 147 PRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRT--PPEAEAALRELLKDNPGVYIWDGTGENPYLG 224 (311)
T ss_pred CeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCC--cHHHHHHHHHhhcCCCceEEecCCCCCcHHH
Confidence 34444455332 2 44553333 33334445545555554443 333322 221 244433332 35778
Q ss_pred hhhCCCceeeecccC-hhhHHHHHHcCCCEecccccccchh----hHHHHHHhhcceEEecc
Q 039701 345 ILSHPAIGGFLTHCG-WNSVLEAVSNGLPMVTWPFFADQFC----NEKLVVQVLRIGVTIGA 401 (476)
Q Consensus 345 ll~~~~~~~~I~HgG-~~s~~eal~~GvP~l~~P~~~DQ~~----~a~~v~e~~g~G~~l~~ 401 (476)
.|..++. +|.=+. .+=+.||+..|+|+.++|.-. +.. ..+.+ ++.|+-.....
T Consensus 225 ~La~ad~--i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~~ 282 (311)
T PF06258_consen 225 FLAAADA--IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFTG 282 (311)
T ss_pred HHHhCCE--EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECCC
Confidence 8888876 555555 577889999999999999976 322 33455 36676655543
No 275
>PTZ00445 p36-lilke protein; Provisional
Probab=47.93 E-value=2.1e+02 Score=25.68 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=60.9
Q ss_pred cChHH-HHHHHHHHHHCCCeEEEEeCCcchh--------------hhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCC
Q 039701 20 GHMIP-MIDIARLLAQHGALVTIVTTPMNAA--------------RFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCE 84 (476)
Q Consensus 20 GHv~P-~l~La~~L~~rGH~Vt~~~~~~~~~--------------~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~ 84 (476)
+|+.| +..++++|.+.|-.|+++|..+... .++..+.... ..+.+.-+-- ..|..+.
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~-~~~~i~~~~~-------yyp~~w~ 145 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSK-CDFKIKKVYA-------YYPKFWQ 145 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcC-ccceeeeeee-------eCCcccC
Confidence 45666 8899999999999999998765433 5555544221 1111111110 1122111
Q ss_pred CCCCCCCcCcHHHHHHHH-HHchH--HHHHHHHhcCCCC-eEEEecCCCchhHHHHhHcCCCcEEEe
Q 039701 85 SWDKLPSMALLPKFFAAI-EMLRL--PLETLFKEIQPKP-GCLISDVCLPWTVSSACKFNVPRIVFH 147 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-~~~~~--~l~~~l~~~~~~~-D~vI~D~~~~~~~~~A~~~giP~v~~~ 147 (476)
.. ..+..+...- +...+ .++.++++.+..| ++++.|-. ..-+..|+++|+-.+.+.
T Consensus 146 ~p------~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~-~~NVeaA~~lGi~ai~f~ 205 (219)
T PTZ00445 146 EP------SDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDD-MNNCKNALKEGYIALHVT 205 (219)
T ss_pred Ch------hhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCC-HHHHHHHHHCCCEEEEcC
Confidence 11 0011100000 01111 2356666655555 47778876 477899999999999853
No 276
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=47.70 E-value=94 Score=32.63 Aligned_cols=79 Identities=14% Similarity=0.060 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCchhHHHHh-cCCCeEeec--------cccHHHhhhCCCceeeecccChh------h
Q 039701 298 IELGLGLEATKKPFIWVIRPGDQAFEKFEERI-EGRGLLIRG--------WAPQVVILSHPAIGGFLTHCGWN------S 362 (476)
Q Consensus 298 ~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~nv~~~~--------~vpq~~ll~~~~~~~~I~HgG~~------s 362 (476)
+.|++.|++.+.+.|+-+.+... ..+-+.+ ..+++.+.. +.-...-...-..+++++|.|-| +
T Consensus 14 ~~i~~~L~~~Gv~~vFgipG~~~--~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~g 91 (566)
T PRK07282 14 DLVLETLRDLGVDTIFGYPGGAV--LPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITG 91 (566)
T ss_pred HHHHHHHHHcCCCEEEecCCcch--HHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHH
Confidence 44677777777777777655532 1122211 122222211 11111111112344499998854 6
Q ss_pred HHHHHHcCCCEecccc
Q 039701 363 VLEAVSNGLPMVTWPF 378 (476)
Q Consensus 363 ~~eal~~GvP~l~~P~ 378 (476)
+++|...++|+|++--
T Consensus 92 la~A~~~~~Pvl~i~G 107 (566)
T PRK07282 92 IADAMSDSVPLLVFTG 107 (566)
T ss_pred HHHHhhcCCCEEEEec
Confidence 7899999999999953
No 277
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=47.58 E-value=97 Score=32.60 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=22.2
Q ss_pred ceeeecccChh------hHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGWN------SVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~~------s~~eal~~GvP~l~~P 377 (476)
.+++++|.|-| .+++|...++|+|++.
T Consensus 65 ~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 65 MSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 44499998854 6779999999999995
No 278
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=47.27 E-value=36 Score=32.73 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=33.0
Q ss_pred HHHHHchHHHHHHHHhcCCCCeEEEecCCCchh----------HHHHhHcCCCcEE
Q 039701 100 AAIEMLRLPLETLFKEIQPKPGCLISDVCLPWT----------VSSACKFNVPRIV 145 (476)
Q Consensus 100 ~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~----------~~~A~~~giP~v~ 145 (476)
+..+...+.+.+++++ .+||++|+-+.+-++ ..+.++++||.++
T Consensus 63 en~eea~~~i~~mv~~--~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 63 ENKEEALKKILEMVKK--LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred hCHHHHHHHHHHHHHh--cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 4445567778888888 899999999855322 2356789999997
No 279
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.25 E-value=1.3e+02 Score=29.59 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=35.2
Q ss_pred CcEEEEEc-CCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 039701 8 QLHFILFP-FLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARF 51 (476)
Q Consensus 8 ~~~vl~~~-~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~ 51 (476)
++.|+++. .-+-|-..-+-.||..+.++|..+.++|...+++-.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence 45555544 448899999999999999999999999987775533
No 280
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=46.35 E-value=84 Score=28.19 Aligned_cols=47 Identities=9% Similarity=0.010 Sum_probs=36.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhhhHhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQH-GALVTIVTTPMNAARFQNVIE 56 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~~~~~~ 56 (476)
-+++.-.|+.|-..=.++++..-+++ |..|.|++..+..+.+.+...
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~ 68 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMK 68 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHH
Confidence 47778889999999999999888888 999999999887776666554
No 281
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=46.27 E-value=1.7e+02 Score=24.81 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=16.4
Q ss_pred cCCcccCCHHHHHHHHHHHHhCCCCeEEEEcC
Q 039701 286 LGSLCDCSTRQLIELGLGLEATKKPFIWVIRP 317 (476)
Q Consensus 286 ~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~ 317 (476)
+||.+ +....++....++..+..+=..+.+
T Consensus 5 mGS~S--D~~~~~~a~~~L~~~gi~~dv~V~S 34 (156)
T TIGR01162 5 MGSDS--DLPTMKKAADILEEFGIPYELRVVS 34 (156)
T ss_pred ECcHh--hHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 45443 3455566666677666655444433
No 282
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=46.21 E-value=24 Score=32.88 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=35.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHC-CCeEEEEeCCcchhhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQH-GALVTIVTTPMNAARFQ 52 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~~ 52 (476)
-+++...++.|-..-.+.++..++.. |+.|.|++.+.....+.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~ 75 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTA 75 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHH
Confidence 46677888999999999999999877 99999999876554443
No 283
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=45.94 E-value=84 Score=26.27 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=29.7
Q ss_pred CcEEEEEcCC-------CccChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 8 QLHFILFPFL-------AQGHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 8 ~~~vl~~~~p-------~~GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
..+|+++..| +..|+--++.++.+++++|.+=.++++
T Consensus 37 gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVS 80 (165)
T COG0678 37 GKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVS 80 (165)
T ss_pred CCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEE
Confidence 4688888877 457999999999999999988554443
No 284
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=45.59 E-value=1.2e+02 Score=31.91 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=22.7
Q ss_pred CceeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 350 AIGGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 350 ~~~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
..+++++|.|- +++++|...++|+|++-
T Consensus 67 ~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 67 KVGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 34449999885 47789999999999985
No 285
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=45.24 E-value=1.1e+02 Score=32.17 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=21.9
Q ss_pred ceeeecccChh------hHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGWN------SVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~~------s~~eal~~GvP~l~~P 377 (476)
.+++++|.|-| .+++|...++|+|++-
T Consensus 78 ~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~ 110 (570)
T PRK06725 78 VGVVFATSGPGATNLVTGLADAYMDSIPLVVIT 110 (570)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCcCEEEEe
Confidence 44488898854 6789999999999984
No 286
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=45.22 E-value=1.2e+02 Score=31.88 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=22.1
Q ss_pred ceeeecccChh------hHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGWN------SVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~~------s~~eal~~GvP~l~~P 377 (476)
.+++++|.|-| ++.+|...++|+|++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44499998854 6789999999999984
No 287
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=45.19 E-value=56 Score=28.00 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=22.2
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEeccccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWPFF 379 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P~~ 379 (476)
..++++|.|- +++.+|...++|+|++.-.
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 99 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITGQ 99 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEecc
Confidence 3448888874 5778999999999998773
No 288
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=45.13 E-value=1.1e+02 Score=31.94 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCCceeeecccCh------hhHHHHHHcCCCEecccc
Q 039701 348 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 348 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
++.+ +++|.|- +.+.+|...++|+|++--
T Consensus 64 kpgv--~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G 98 (549)
T PRK06457 64 KPSA--CMGTSGPGSIHLLNGLYDAKMDHAPVIALTG 98 (549)
T ss_pred CCeE--EEeCCCCchhhhHHHHHHHHhcCCCEEEEec
Confidence 4555 9999885 477899999999999843
No 289
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=45.06 E-value=28 Score=28.44 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=25.9
Q ss_pred CccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhH
Q 039701 18 AQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 18 ~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 54 (476)
..-.+--.+=|+..|.++||+|++++++.....++-+
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 3344555678899999999999999999554444333
No 290
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=45.02 E-value=24 Score=30.54 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=19.8
Q ss_pred CCCceeeecccChhhHHHHHHcCCCEeccccc
Q 039701 348 HPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFF 379 (476)
Q Consensus 348 ~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~ 379 (476)
.+++ +|++||...+..... ++|+|-+|..
T Consensus 34 g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 34 GADV--IISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp T-SE--EEEEHHHHHHHHCC--SS-EEEE---
T ss_pred CCeE--EEECCHHHHHHHHhC-CCCEEEECCC
Confidence 4555 999999888888877 9999999984
No 291
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=44.97 E-value=2.3e+02 Score=28.53 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEE
Q 039701 107 LPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVF 146 (476)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~ 146 (476)
.++.+++++ .+||++|.+.. ...+|+++|||++.+
T Consensus 362 ~e~~~~l~~--~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKE--LKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHh--cCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 456777777 79999999975 468999999999974
No 292
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=44.85 E-value=25 Score=24.35 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=37.9
Q ss_pred CCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 039701 413 NGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKD 470 (476)
Q Consensus 413 ~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 470 (476)
++|.++.++|.+.+..+.... .....+++.+.+-+.++..+++.-..++|++.
T Consensus 13 ~~G~i~~~el~~~~~~~~~~~-----~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 13 GDGYISKEELRRALKHLGRDM-----SDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp SSSEEEHHHHHHHHHHTTSHS-----THHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcccc-----cHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 468999999999999997532 14444555555555567788887888888764
No 293
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=44.77 E-value=1.3e+02 Score=31.61 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=22.5
Q ss_pred ceeeecccChh------hHHHHHHcCCCEecccc
Q 039701 351 IGGFLTHCGWN------SVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 351 ~~~~I~HgG~~------s~~eal~~GvP~l~~P~ 378 (476)
.+++++|.|-| ++++|...++|+|++--
T Consensus 68 ~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G 101 (574)
T PRK07979 68 VGVVLVTSGPGATNAITGIATAYMDSIPLVVLSG 101 (574)
T ss_pred ceEEEECCCccHhhhHHHHHHHhhcCCCEEEEEC
Confidence 44499998854 67899999999999943
No 294
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=44.75 E-value=1.1e+02 Score=31.81 Aligned_cols=28 Identities=29% Similarity=0.189 Sum_probs=22.7
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEecccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
.+++++|.|- +++.+|-..++|+|++--
T Consensus 62 ~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G 95 (539)
T TIGR02418 62 PGVALVTSGPGCSNLVTGLATANSEGDPVVAIGG 95 (539)
T ss_pred ceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeC
Confidence 3448999885 478899999999999954
No 295
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=44.75 E-value=47 Score=31.73 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHH--c
Q 039701 292 CSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVS--N 369 (476)
Q Consensus 292 ~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~--~ 369 (476)
.+.+....|.+|+.+...+.||.+.++.. -..+.++++...+-.+|.. ||=..-..+++-+++ .
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g------------~~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~al~~~~ 115 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGDD------------SNELLPYLDYELIKKNPKI--FIGYSDITALHLAIYKKT 115 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcccC------------HhhhhhhcCHHHHhhCCCE--EEeccHHHHHHHHHHHhc
Confidence 45677788999999999999999988752 2334466777777777777 888887777777774 3
Q ss_pred CCCEecccccc
Q 039701 370 GLPMVTWPFFA 380 (476)
Q Consensus 370 GvP~l~~P~~~ 380 (476)
|++.+.=|...
T Consensus 116 g~~t~hGp~~~ 126 (308)
T cd07062 116 GLVTYYGPNLL 126 (308)
T ss_pred CCeEEECcccc
Confidence 67766666644
No 296
>PRK07524 hypothetical protein; Provisional
Probab=44.70 E-value=1.5e+02 Score=30.89 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=21.3
Q ss_pred eeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 352 GGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 352 ~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
++++.|.|- +++.+|...++|+|++-
T Consensus 66 gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~ 97 (535)
T PRK07524 66 GVCFIITGPGMTNIATAMGQAYADSIPMLVIS 97 (535)
T ss_pred eEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 338888885 47889999999999883
No 297
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=44.65 E-value=27 Score=30.41 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=31.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 52 (476)
||++.-.|+-|-+.- ..|.+.|.++|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 355555566665554 889999999999999999886665544
No 298
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=44.30 E-value=2.3e+02 Score=25.10 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHC--CCeEEEEeCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTP 45 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~r--GH~Vt~~~~~ 45 (476)
+||+++..+..+-.. +|.+.+.+. +++|.++.+.
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEec
Confidence 379999987654444 556667665 4778876444
No 299
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=44.21 E-value=2e+02 Score=29.77 Aligned_cols=34 Identities=21% Similarity=0.092 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEE
Q 039701 108 PLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVF 146 (476)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~ 146 (476)
++++++.+ .+||++|.+.. +..+|+++|||++.+
T Consensus 428 ~l~~~l~~--~~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 428 HLRSLVFT--EPVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHhh--cCCCEEEECch---HHHHHHHcCCCEEEe
Confidence 55677766 79999998864 577999999999874
No 300
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=44.18 E-value=36 Score=29.76 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=35.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHH-CCCeEEEEeCCcchhhhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQ-HGALVTIVTTPMNAARFQN 53 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~-rGH~Vt~~~~~~~~~~~~~ 53 (476)
||++.-.|+-| .+=...|.++|.+ .||+|.++.++.....+..
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 78888888877 6669999999999 5999999999866655544
No 301
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=44.16 E-value=32 Score=32.90 Aligned_cols=34 Identities=18% Similarity=0.030 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCc
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~ 46 (476)
++||+++-.|+.|= .+|..|++.||+|+++....
T Consensus 5 ~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC
Confidence 56999999888884 57788999999999998754
No 302
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=44.08 E-value=1.4e+02 Score=31.48 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.7
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEecccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
.++++.|.|- +++.+|...++|+|++--
T Consensus 68 ~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G 101 (574)
T PRK06466 68 TGVVLVTSGPGATNAITGIATAYMDSIPMVVLSG 101 (574)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEec
Confidence 3449999885 578899999999999943
No 303
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=43.90 E-value=33 Score=35.69 Aligned_cols=40 Identities=8% Similarity=-0.223 Sum_probs=28.7
Q ss_pred CeEEEecCCC---chhHHHHhHcCCCcEEEecchHHHHHHHhh
Q 039701 120 PGCLISDVCL---PWTVSSACKFNVPRIVFHGFSCFCLLCLHS 159 (476)
Q Consensus 120 ~D~vI~D~~~---~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 159 (476)
-.-||+.... ..+...+++..+++.+++|..++....+..
T Consensus 142 ~~~ViaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR~l~ 184 (633)
T PF05693_consen 142 KPKVIAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGRYLA 184 (633)
T ss_dssp SEEEEEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHHHHT
T ss_pred CCcEEEEechHhHhHHHHHHhccCCCeeEEEEecccchhhHhh
Confidence 4566665543 456899999999999999999998766554
No 304
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=43.89 E-value=1.3e+02 Score=31.38 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=21.9
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
.+++++|.|- +.+++|-..++|||++-
T Consensus 66 ~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~ 98 (554)
T TIGR03254 66 PGVCLTVSAPGFLNGLTALANATTNCFPMIMIS 98 (554)
T ss_pred CEEEEEccCccHHhHHHHHHHHHhcCCCEEEEE
Confidence 3448999775 47789999999999985
No 305
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=43.88 E-value=1.5e+02 Score=26.13 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=32.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNA 48 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~ 48 (476)
-|+|+-..+-|-..=...||..++.+|..|.+++...++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 467777779999999999999999999999999987653
No 306
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=43.85 E-value=1.7e+02 Score=29.04 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=59.7
Q ss_pred CCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeE-eeccccHHHhhhCCCceeee
Q 039701 277 QPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLL-IRGWAPQVVILSHPAIGGFL 355 (476)
Q Consensus 277 ~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~-~~~~vpq~~ll~~~~~~~~I 355 (476)
.+||.|-+|+ ......-...+.+.|++.++.+++....+.. -..++..+....+- +.+...+. |-.+- ++ =|
T Consensus 183 ~~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~G-G~aME~Li~~G~~~~VlDlTttE-l~d~l-~G-Gv 255 (403)
T PF06792_consen 183 EDKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGTG-GRAMERLIREGQFDGVLDLTTTE-LADEL-FG-GV 255 (403)
T ss_pred CCCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCCc-hHHHHHHHHcCCcEEEEECcHHH-HHHHH-hC-CC
Confidence 3456677652 3334466777888888899999887655431 11233333333222 33333332 11110 11 36
Q ss_pred cccChhhHHHHHHcCCCEecccccccc
Q 039701 356 THCGWNSVLEAVSNGLPMVTWPFFADQ 382 (476)
Q Consensus 356 ~HgG~~s~~eal~~GvP~l~~P~~~DQ 382 (476)
..+|-+=...|...|+|||+.|-..|-
T Consensus 256 ~sagp~Rl~AA~~~GIP~Vvs~GalDm 282 (403)
T PF06792_consen 256 LSAGPDRLEAAARAGIPQVVSPGALDM 282 (403)
T ss_pred CCCCchHHHHHHHcCCCEEEecCccce
Confidence 677888889999999999999997774
No 307
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=43.80 E-value=1.9e+02 Score=27.21 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=15.9
Q ss_pred HchHHHHHHHHhcCCCCeEEEe
Q 039701 104 MLRLPLETLFKEIQPKPGCLIS 125 (476)
Q Consensus 104 ~~~~~l~~~l~~~~~~~D~vI~ 125 (476)
.....|.+++++ .+||+||.
T Consensus 108 ~~~~~L~~iIr~--~~PdvVvT 127 (283)
T TIGR03446 108 EAAEPLVRVIRE--FRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHH--cCCEEEEe
Confidence 355777888888 89999886
No 308
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=43.74 E-value=2.2e+02 Score=28.44 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEE
Q 039701 108 PLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVF 146 (476)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~ 146 (476)
++.+.++. .+||++|.... ...+|+++|+|++.+
T Consensus 347 e~~~~i~~--~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKE--KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhh--cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 45666777 79999999954 357999999999853
No 309
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=43.71 E-value=1.4e+02 Score=31.47 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=23.4
Q ss_pred CCCceeeecccCh------hhHHHHHHcCCCEecccc
Q 039701 348 HPAIGGFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 348 ~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
.+.+ +++|.|- +.+++|...++|+|++.-
T Consensus 63 k~gv--~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G 97 (575)
T TIGR02720 63 KIGV--CFGSAGPGATHLLNGLYDAKEDHVPVLALVG 97 (575)
T ss_pred CceE--EEeCCCCcHHHHHHHHHHHhhcCCCEEEEec
Confidence 3445 9999885 478899999999999944
No 310
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=43.50 E-value=1.1e+02 Score=32.25 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCchhHHHHh-cCCCeEeec--------ccc--HHHhhhCCCceeeecccCh------
Q 039701 298 IELGLGLEATKKPFIWVIRPGDQAFEKFEERI-EGRGLLIRG--------WAP--QVVILSHPAIGGFLTHCGW------ 360 (476)
Q Consensus 298 ~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~nv~~~~--------~vp--q~~ll~~~~~~~~I~HgG~------ 360 (476)
+.|++.|++.+++.|+.+.++.. ..+-+.+ +.+++.+.. +.- +..+=.++.+ +++|.|-
T Consensus 25 ~~l~~~L~~~GV~~vFgvpG~~~--~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv--~~~t~GpG~~N~l 100 (587)
T PRK06965 25 EILMKALAAEGVEFIWGYPGGAV--LYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGV--ALVTSGPGVTNAV 100 (587)
T ss_pred HHHHHHHHHcCCCEEEecCCcch--HHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeE--EEECCCccHHHHH
Confidence 44677777777777777655542 1111111 112222211 111 1112233444 8999884
Q ss_pred hhHHHHHHcCCCEecccc
Q 039701 361 NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 361 ~s~~eal~~GvP~l~~P~ 378 (476)
+++++|...++|+|++.-
T Consensus 101 ~gl~~A~~~~~Pvl~i~G 118 (587)
T PRK06965 101 TGIATAYMDSIPMVVISG 118 (587)
T ss_pred HHHHHHhhcCCCEEEEec
Confidence 478899999999999964
No 311
>PRK11914 diacylglycerol kinase; Reviewed
Probab=43.49 E-value=64 Score=30.71 Aligned_cols=68 Identities=7% Similarity=0.065 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHH----Hc
Q 039701 294 TRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAV----SN 369 (476)
Q Consensus 294 ~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal----~~ 369 (476)
.+.+..+.+.+++.+..+.+...........+.. .......++ +|--||-||+.|++ ..
T Consensus 25 ~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~---------------~~~~~~~d~--vvv~GGDGTi~evv~~l~~~ 87 (306)
T PRK11914 25 PHAAERAIARLHHRGVDVVEIVGTDAHDARHLVA---------------AALAKGTDA--LVVVGGDGVISNALQVLAGT 87 (306)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHH---------------HHHhcCCCE--EEEECCchHHHHHhHHhccC
Confidence 4556678888888877765433322100111111 111223455 99999999999986 44
Q ss_pred CCCEecccc
Q 039701 370 GLPMVTWPF 378 (476)
Q Consensus 370 GvP~l~~P~ 378 (476)
++|+-++|.
T Consensus 88 ~~~lgiiP~ 96 (306)
T PRK11914 88 DIPLGIIPA 96 (306)
T ss_pred CCcEEEEeC
Confidence 799999997
No 312
>PRK08266 hypothetical protein; Provisional
Probab=43.43 E-value=1.7e+02 Score=30.56 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=22.1
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
.+++++|.|- +++.+|...++|+|++-
T Consensus 69 ~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 69 PGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 3348899885 47889999999999984
No 313
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=42.86 E-value=1.1e+02 Score=31.84 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=23.7
Q ss_pred hCCCceeeecccCh------hhHHHHHHcCCCEecccc
Q 039701 347 SHPAIGGFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 347 ~~~~~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
.++.+ +++|.|- +.+.||...++|+|++--
T Consensus 62 g~~gv--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g 97 (548)
T PRK08978 62 GKVGV--CIATSGPGATNLITGLADALLDSVPVVAITG 97 (548)
T ss_pred CCCEE--EEECCCCcHHHHHHHHHHHhhcCCCEEEEec
Confidence 34555 9999885 478899999999999943
No 314
>PRK08617 acetolactate synthase; Reviewed
Probab=42.73 E-value=1.4e+02 Score=31.24 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=22.3
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEecccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
.+++++|.|- +++.+|-..++|+|++--
T Consensus 68 ~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG 101 (552)
T PRK08617 68 PGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGG 101 (552)
T ss_pred CEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEec
Confidence 3448888774 478899999999999853
No 315
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=42.48 E-value=1.7e+02 Score=31.01 Aligned_cols=79 Identities=15% Similarity=0.068 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCchhHHHHh-cCCCeEeec--------cccHHHhhhCCCceeeecccCh------hh
Q 039701 298 IELGLGLEATKKPFIWVIRPGDQAFEKFEERI-EGRGLLIRG--------WAPQVVILSHPAIGGFLTHCGW------NS 362 (476)
Q Consensus 298 ~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~nv~~~~--------~vpq~~ll~~~~~~~~I~HgG~------~s 362 (476)
+.|++.|++.+.+.|+-..+... ..+-+.+ +.+++.+.. +.-...-...-..+++++|.|- +.
T Consensus 15 ~~l~~~L~~~GV~~vFGvpG~~~--~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~g 92 (595)
T PRK09107 15 EMVVQALKDQGVEHIFGYPGGAV--LPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAVTP 92 (595)
T ss_pred HHHHHHHHHCCCCEEEEccCcch--HHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhHHHHH
Confidence 44677777777777777655531 1121111 112222211 1111111122234449999885 47
Q ss_pred HHHHHHcCCCEecccc
Q 039701 363 VLEAVSNGLPMVTWPF 378 (476)
Q Consensus 363 ~~eal~~GvP~l~~P~ 378 (476)
+++|...++|+|++--
T Consensus 93 ia~A~~~~~Pvl~i~G 108 (595)
T PRK09107 93 LQDALMDSIPLVCITG 108 (595)
T ss_pred HHHHhhcCCCEEEEEc
Confidence 8899999999999854
No 316
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=42.48 E-value=47 Score=30.74 Aligned_cols=41 Identities=10% Similarity=-0.057 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCCeEEEecCCC------chhHHHHhHcCCCcEEEecc
Q 039701 107 LPLETLFKEIQPKPGCLISDVCL------PWTVSSACKFNVPRIVFHGF 149 (476)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~------~~~~~~A~~~giP~v~~~~~ 149 (476)
..|...+++ ..||+||+-..+ --+..+|+.+|+|++++...
T Consensus 102 ~~La~ai~~--~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 102 SALAAAAQK--AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHH--hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 345556666 579999976643 24579999999999996554
No 317
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.05 E-value=99 Score=27.74 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=28.4
Q ss_pred CccChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 039701 18 AQGHMIPMIDIARLLAQHGALVTIVTTPMNAARF 51 (476)
Q Consensus 18 ~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~ 51 (476)
+.|--.=+.+++.-+.+.||+|++++++.....+
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ref 71 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREF 71 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHHH
Confidence 6777788889999999999999999998754433
No 318
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=42.05 E-value=55 Score=28.64 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCCCeEEEecCCC-chhHHHHhHcCCCcEEEecch
Q 039701 107 LPLETLFKEIQPKPGCLISDVCL-PWTVSSACKFNVPRIVFHGFS 150 (476)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~-~~~~~~A~~~giP~v~~~~~~ 150 (476)
..+.+++++...+..++|..++- +++..+|+++++|.|.+.|.-
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 45566676632223477777765 678899999999999876554
No 319
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=41.97 E-value=65 Score=31.28 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHHHHHHHH
Q 039701 24 PMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIE 103 (476)
Q Consensus 24 P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (476)
-+..|++.|.++|++|.++..+...+..++..... + -. ......... . .
T Consensus 201 ~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~---~--~~------------~~~~~~~l~---g-----------~ 249 (348)
T PRK10916 201 HYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAAL---N--TE------------QQAWCRNLA---G-----------E 249 (348)
T ss_pred HHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhc---c--cc------------cccceeecc---C-----------C
Confidence 47899999988899999988876655554442210 0 00 000000000 0 0
Q ss_pred HchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecc
Q 039701 104 MLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGF 149 (476)
Q Consensus 104 ~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~ 149 (476)
....++..+++ +.|++|+.-. +...+|..+|+|.+.++..
T Consensus 250 ~sL~el~ali~----~a~l~I~nDT--Gp~HlAaA~g~P~valfGp 289 (348)
T PRK10916 250 TQLEQAVILIA----ACKAIVTNDS--GLMHVAAALNRPLVALYGP 289 (348)
T ss_pred CCHHHHHHHHH----hCCEEEecCC--hHHHHHHHhCCCEEEEECC
Confidence 01233445554 5889886544 6799999999999998653
No 320
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=41.90 E-value=1.8e+02 Score=25.47 Aligned_cols=63 Identities=10% Similarity=0.095 Sum_probs=43.0
Q ss_pred CcE-EEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeC---CcchhhhhhHhhhcccCCCceEEEEee
Q 039701 8 QLH-FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT---PMNAARFQNVIERGIQSGLRIQVIEFY 71 (476)
Q Consensus 8 ~~~-vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~---~~~~~~~~~~~~~~~~~g~~i~~~~i~ 71 (476)
+.+ |+|+..++.-|---+..+++.|++.|..|.+++- ..+.+.++...+... ++.+-+|+.+|
T Consensus 107 ~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~-~~~~s~~~~~~ 173 (187)
T cd01452 107 KQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN-GKDGSHLVSVP 173 (187)
T ss_pred cceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc-CCCCceEEEeC
Confidence 345 8888888777877788999999999999888754 334555555544432 22246677665
No 321
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=41.88 E-value=51 Score=27.96 Aligned_cols=34 Identities=26% Similarity=0.173 Sum_probs=25.8
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEE
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWV 314 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~ 314 (476)
.+|+|+||-...+.+.+...++++.+.+..-|+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 5999999988777777888888888876433333
No 322
>PRK07586 hypothetical protein; Validated
Probab=41.47 E-value=1.3e+02 Score=31.05 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=20.6
Q ss_pred eeeecccChh------hHHHHHHcCCCEecccc
Q 039701 352 GGFLTHCGWN------SVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 352 ~~~I~HgG~~------s~~eal~~GvP~l~~P~ 378 (476)
++++.|.|-| ++.+|...++|+|++.-
T Consensus 66 gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G 98 (514)
T PRK07586 66 AATLLHLGPGLANGLANLHNARRARTPIVNIVG 98 (514)
T ss_pred EEEEecccHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 3388887755 45589999999999854
No 323
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=41.20 E-value=2.3e+02 Score=28.53 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=35.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHH-HCCCeEEEEeCCcchhhh
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLA-QHGALVTIVTTPMNAARF 51 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~-~rGH~Vt~~~~~~~~~~~ 51 (476)
--++++..++-|-..=+..||..|. ++|..|.++....+....
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA 143 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence 3566777779999999999999997 689999999887665543
No 324
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=41.09 E-value=2.5e+02 Score=24.63 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=21.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCC--eEEEEeCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGA--LVTIVTTP 45 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH--~Vt~~~~~ 45 (476)
+||+++..+..+-.. +|.+.+.+.++ +|.++.+.
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEEC
Confidence 478888876655444 56666776655 67765444
No 325
>PRK10867 signal recognition particle protein; Provisional
Probab=41.06 E-value=2.3e+02 Score=28.58 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=35.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHC-CCeEEEEeCCcchhhh
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQH-GALVTIVTTPMNAARF 51 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~r-GH~Vt~~~~~~~~~~~ 51 (476)
.-|+|+..++-|-..=+..||..|+++ |+.|.+++...+....
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 346677777999999999999999999 9999999887665543
No 326
>PRK04328 hypothetical protein; Provisional
Probab=41.03 E-value=2.9e+02 Score=25.34 Aligned_cols=45 Identities=13% Similarity=-0.061 Sum_probs=36.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhH
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 54 (476)
-+++.-.|+.|-..=.+.++.+-+++|+.+.+++.++..+.+.+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~ 69 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRN 69 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHH
Confidence 467777889999988899888877889999999987766655544
No 327
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=40.90 E-value=33 Score=30.49 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=30.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
|++..+|+.|-..-...||++|.+++|+|...+.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 6777889999999999999999999999987664
No 328
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=40.68 E-value=1.7e+02 Score=29.37 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=24.4
Q ss_pred HHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEE
Q 039701 111 TLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVF 146 (476)
Q Consensus 111 ~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~ 146 (476)
+.+++ .+||+||..... ..+|+++|||++.+
T Consensus 352 ~~~~~--~~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 352 EILEM--LKPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred HHHHh--cCCCEEEecCcc---chhhhhcCCCEEec
Confidence 34455 699999998754 36999999999985
No 329
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=40.47 E-value=2.2e+02 Score=29.61 Aligned_cols=29 Identities=7% Similarity=0.006 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCchhHHHHhHcCCCcEEEecc
Q 039701 118 PKPGCLISDVCLPWTVSSACKFNVPRIVFHGF 149 (476)
Q Consensus 118 ~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~ 149 (476)
.++++||.|.. +...|+++|++.+.+.+.
T Consensus 144 ~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 144 RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 69999999974 478999999999998664
No 330
>PRK07064 hypothetical protein; Provisional
Probab=39.98 E-value=2e+02 Score=29.87 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=22.1
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
.+++++|.|- +.+.+|...++|+|++-
T Consensus 67 ~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~ 99 (544)
T PRK07064 67 LGVALTSTGTGAGNAAGALVEALTAGTPLLHIT 99 (544)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3449999885 47789999999999884
No 331
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=39.53 E-value=2.8e+02 Score=28.14 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=28.2
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 10 HFILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 10 ~vl~~~~p-~~GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
+++|.... .-|-..=...|++.|+++|++|..+-+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 46666444 568899999999999999999998754
No 332
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=38.83 E-value=36 Score=29.51 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=30.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARF 51 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~ 51 (476)
||++.-.++.| ..-...|.+.|.++|++|.++.++.....+
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 67777777655 445569999999999999999988544433
No 333
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=38.75 E-value=51 Score=28.48 Aligned_cols=41 Identities=10% Similarity=0.098 Sum_probs=30.0
Q ss_pred EEEEcCCCccChHH-HHHHHHHHHH-CCCeEEEEeCCcchhhhh
Q 039701 11 FILFPFLAQGHMIP-MIDIARLLAQ-HGALVTIVTTPMNAARFQ 52 (476)
Q Consensus 11 vl~~~~p~~GHv~P-~l~La~~L~~-rGH~Vt~~~~~~~~~~~~ 52 (476)
|++.-.++ ||... .+.+.+.|.+ +||+|.++.++...+.++
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 44444454 77766 8899999984 599999999886665444
No 334
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.33 E-value=45 Score=29.75 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=25.2
Q ss_pred CCCCCCCCcEEEEEcCC--CccChHHHHHHHHHHHHCCCeEEEE
Q 039701 1 MASQAGSQLHFILFPFL--AQGHMIPMIDIARLLAQHGALVTIV 42 (476)
Q Consensus 1 m~~~~~~~~~vl~~~~p--~~GHv~P~l~La~~L~~rGH~Vt~~ 42 (476)
|+.++. +++|++.... +.|| +||+++.+.|+.|.-.
T Consensus 1 ~e~~~~-~k~VlItgcs~GGIG~-----ala~ef~~~G~~V~At 38 (289)
T KOG1209|consen 1 SELQSQ-PKKVLITGCSSGGIGY-----ALAKEFARNGYLVYAT 38 (289)
T ss_pred CCcccC-CCeEEEeecCCcchhH-----HHHHHHHhCCeEEEEE
Confidence 556655 6677776544 4454 6899999999998643
No 335
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=38.27 E-value=3.1e+02 Score=29.66 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=29.4
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 10 HFILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 10 ~vl~~~~p-~~GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
.|.+.+.. .-|-..-.+.|++.|.++|.+|.++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 56666555 578899999999999999999999874
No 336
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=38.06 E-value=3.8e+02 Score=25.94 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=65.7
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHH-hhhCCCceeeecccC
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVV-ILSHPAIGGFLTHCG 359 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~-ll~~~~~~~~I~HgG 359 (476)
++.|..+.+.+ ..+++++.+.+.+++.+.+-... .+.+.. -.+ ++...+-..+++|+|
T Consensus 179 ~lqIgAr~~~N------~~LL~~va~~~kPViLk~G~~~t-i~E~l~--------------A~e~i~~~GN~~viL~erG 237 (335)
T PRK08673 179 ILQIGARNMQN------FDLLKEVGKTNKPVLLKRGMSAT-IEEWLM--------------AAEYILAEGNPNVILCERG 237 (335)
T ss_pred eEEECcccccC------HHHHHHHHcCCCcEEEeCCCCCC-HHHHHH--------------HHHHHHHcCCCeEEEEECC
Confidence 45555444433 34677777888888888764422 222221 111 233222223788876
Q ss_pred hhhH------------HHHH--HcCCCEecccccccch-----hhHHHHHHhhcc-eEEeccCCCCCCcccccCCcccch
Q 039701 360 WNSV------------LEAV--SNGLPMVTWPFFADQF-----CNEKLVVQVLRI-GVTIGAERPPSLADEERNGVPVKK 419 (476)
Q Consensus 360 ~~s~------------~eal--~~GvP~l~~P~~~DQ~-----~~a~~v~e~~g~-G~~l~~~~~~~~~~~~~~~~~~t~ 419 (476)
..|. ...+ ..+.|+++-|-+.-.. ..+...+ -+|+ |+.+.....++.+. ++....+++
T Consensus 238 ~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAv-A~GAdGliIE~H~~pd~al-sD~~~sl~p 315 (335)
T PRK08673 238 IRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAV-AAGADGLIVEVHPDPEKAL-SDGPQSLTP 315 (335)
T ss_pred CCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHH-HhCCCEEEEEecCCcccCC-CcchhcCCH
Confidence 5222 1111 2478998888865432 5555554 6677 45554432222222 233345677
Q ss_pred hHHHHHHHHH
Q 039701 420 EDVKKAINML 429 (476)
Q Consensus 420 ~~l~~~i~~l 429 (476)
+++++.++++
T Consensus 316 ~e~~~lv~~i 325 (335)
T PRK08673 316 EEFEELMKKL 325 (335)
T ss_pred HHHHHHHHHH
Confidence 7777666555
No 337
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=37.49 E-value=3.5e+02 Score=25.25 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=47.3
Q ss_pred HHHHHHhCCCCeEEEEcCCCCCchhHHHHh----cCCCeE-----eeccccHHHhhhCCCceeeecccC-hhhHHHHHHc
Q 039701 300 LGLGLEATKKPFIWVIRPGDQAFEKFEERI----EGRGLL-----IRGWAPQVVILSHPAIGGFLTHCG-WNSVLEAVSN 369 (476)
Q Consensus 300 i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~nv~-----~~~~vpq~~ll~~~~~~~~I~HgG-~~s~~eal~~ 369 (476)
+.+.++..+..++.+.+-+. |+.....+ ...... -.++=|+.+.|+.++. +|.-.. .|-.+||.+.
T Consensus 189 l~k~l~~~g~~~lisfSRRT--p~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~sEAasT 264 (329)
T COG3660 189 LVKILENQGGSFLISFSRRT--PDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMCSEAAST 264 (329)
T ss_pred HHHHHHhCCceEEEEeecCC--cHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhhHHHhcc
Confidence 45566678888888876665 33333322 111111 2246699999987776 766655 5677899999
Q ss_pred CCCEecc
Q 039701 370 GLPMVTW 376 (476)
Q Consensus 370 GvP~l~~ 376 (476)
|+|+.++
T Consensus 265 gkPv~~~ 271 (329)
T COG3660 265 GKPVFIL 271 (329)
T ss_pred CCCeEEE
Confidence 9998654
No 338
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=37.46 E-value=44 Score=31.57 Aligned_cols=31 Identities=29% Similarity=0.228 Sum_probs=25.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
+||+++-.|..| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 368888887777 4678889999999999986
No 339
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.27 E-value=1.5e+02 Score=22.33 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHh
Q 039701 421 DVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 474 (476)
Q Consensus 421 ~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~ 474 (476)
+....++++++|...=...|+.|++..+.+.+. |.+........+..|+++
T Consensus 17 q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e---~e~p~vRaAtaIsiLeei 67 (93)
T COG1698 17 QVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNE---GESPAVRAATAISILEEI 67 (93)
T ss_pred HHHHHHHHHHccccccHHHHHHHHHHHHHHhCC---CCCchhHHHHHHHHHHHH
Confidence 344556667788744445555555555555544 766666666666666654
No 340
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=37.12 E-value=60 Score=24.45 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=39.3
Q ss_pred CCcccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHhc
Q 039701 413 NGVPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQA 475 (476)
Q Consensus 413 ~~~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~~ 475 (476)
+++.++.++|+..+.+-|.+ .+.. ...+.+.++. .+..|.+.-..++|++.|.+++
T Consensus 22 ~~g~i~~~ELk~ll~~elg~-----~ls~-~~~v~~mi~~-~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 22 GKESLTASEFQELLTQQLPH-----LLKD-VEGLEEKMKN-LDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred CCCeECHHHHHHHHHHHhhh-----hccC-HHHHHHHHHH-hCCCCCCCCcHHHHHHHHHHHH
Confidence 45789999999999884431 2221 1445555554 4677888899999999998775
No 341
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=36.84 E-value=1.2e+02 Score=31.75 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCchhHHHHh-cCCCeEeecc--------ccHHHhhhCCCceeeecccCh------hh
Q 039701 298 IELGLGLEATKKPFIWVIRPGDQAFEKFEERI-EGRGLLIRGW--------APQVVILSHPAIGGFLTHCGW------NS 362 (476)
Q Consensus 298 ~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~nv~~~~~--------vpq~~ll~~~~~~~~I~HgG~------~s 362 (476)
+.|++.|++.+++.++-+.+... ..+-+.+ ..+++.+..- .-...-...-..++++.|.|- +.
T Consensus 13 ~~l~~~L~~~GV~~vFgvpG~~~--~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~ 90 (568)
T PRK07449 13 AVILEELTRLGVRHVVIAPGSRS--TPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPA 90 (568)
T ss_pred HHHHHHHHHcCCCEEEECCCCcc--HHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHH
Confidence 45788888888888888776642 1222211 2333433321 111111112223348888885 57
Q ss_pred HHHHHHcCCCEecccc
Q 039701 363 VLEAVSNGLPMVTWPF 378 (476)
Q Consensus 363 ~~eal~~GvP~l~~P~ 378 (476)
++||-..++|+|++.-
T Consensus 91 i~~A~~~~~Pvl~IsG 106 (568)
T PRK07449 91 VIEAGLTGVPLIVLTA 106 (568)
T ss_pred HHHHhhcCCcEEEEEC
Confidence 8899999999999943
No 342
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=36.24 E-value=1.8e+02 Score=26.86 Aligned_cols=132 Identities=16% Similarity=0.095 Sum_probs=69.4
Q ss_pred cEEEEEc-CCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhh---hccc--CCC-ceEEEEeeCCCcccCCCC
Q 039701 9 LHFILFP-FLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIE---RGIQ--SGL-RIQVIEFYFPCQEVGLPE 81 (476)
Q Consensus 9 ~~vl~~~-~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~---~~~~--~g~-~i~~~~i~~~~~~~~~~~ 81 (476)
+|-.|+- =++-|...=...||-.|++-+|.|.++++.+.+..-.+..+ +.+. .|+ ++-...|...-.-..+++
T Consensus 19 lKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~e~~~~~~ 98 (323)
T KOG2825|consen 19 LKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPNVEMGDMPE 98 (323)
T ss_pred eeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhcCCCccccChhhheeeecCCchhhhhhHH
Confidence 4544543 35778889999999999999999999998776543333222 1111 121 122233321100011222
Q ss_pred CCCCCCC---CCCcCcHHHHHHHHH-----HchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcE
Q 039701 82 GCESWDK---LPSMALLPKFFAAIE-----MLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRI 144 (476)
Q Consensus 82 ~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v 144 (476)
....... ......+..+...+. ....++-+++++ -.+|+||.|.. .....-+.++.|.+
T Consensus 99 m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~--~~F~~vVFDTA--PTGHTLRlL~fP~~ 165 (323)
T KOG2825|consen 99 MFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKG--MNFDVVVFDTA--PTGHTLRLLQFPTT 165 (323)
T ss_pred HhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhc--cccceEEeccC--CCcceehhhccchH
Confidence 2211111 111122233322221 345677788888 78999999975 23344555555554
No 343
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=36.20 E-value=78 Score=27.48 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCeEEEecCC--CchhHHHHhHcCCCcEEE
Q 039701 108 PLETLFKEIQPKPGCLISDVC--LPWTVSSACKFNVPRIVF 146 (476)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~--~~~~~~~A~~~giP~v~~ 146 (476)
.+.+.+++ .++|.|++=.. ++.+..+|+++|+|++.+
T Consensus 44 ~~~~~~~~--~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD--DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc--cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 55555655 68999995553 468999999999999984
No 344
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=35.93 E-value=1.8e+02 Score=27.17 Aligned_cols=101 Identities=18% Similarity=0.104 Sum_probs=55.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCC
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLP 90 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~ 90 (476)
|+|+-.|+-|-..-...|++.|.+.|.+|.++...... +.+. . .. +
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~--------------------------~-y~--~--- 49 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN--------------------------D-YA--D--- 49 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS--------------------------S-S-------
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh--------------------------h-hh--c---
Confidence 78899999999999999999999999999998844110 0000 0 00 0
Q ss_pred CcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC-ch-----hHHHHhHcCCCcEEEecchHHH
Q 039701 91 SMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCL-PW-----TVSSACKFNVPRIVFHGFSCFC 153 (476)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~-~~-----~~~~A~~~giP~v~~~~~~~~~ 153 (476)
. . .-...-..+...+...+. +-++||+|... .- ...+|+..+.+++.++.....-
T Consensus 50 ~-~---~Ek~~R~~l~s~v~r~ls----~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e 110 (270)
T PF08433_consen 50 S-K---KEKEARGSLKSAVERALS----KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLE 110 (270)
T ss_dssp G-G---GHHHHHHHHHHHHHHHHT----T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HH
T ss_pred h-h---hhHHHHHHHHHHHHHhhc----cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHH
Confidence 0 0 111111123344444443 33899999854 32 3689999999999876655443
No 345
>PRK13604 luxD acyl transferase; Provisional
Probab=35.85 E-value=82 Score=30.03 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEE
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIV 42 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~ 42 (476)
+..++++..+..++-.-+..+|+.|.++|..|.-+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 45788888898888777999999999999998865
No 346
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=35.83 E-value=66 Score=31.88 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=32.1
Q ss_pred HHHchHHHHHHHHhcCCCCeEEEecCCCchh----------HHHHhHcCCCcEEE
Q 039701 102 IEMLRLPLETLFKEIQPKPGCLISDVCLPWT----------VSSACKFNVPRIVF 146 (476)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~----------~~~A~~~giP~v~~ 146 (476)
.+...+.+.+++++ .+||++|+-+.+.++ ..+.++++||.+.-
T Consensus 61 ~eea~~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 61 LEEAVARVLEMLKD--KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 45566788888888 899999999855322 13566799999983
No 347
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=35.74 E-value=66 Score=31.89 Aligned_cols=44 Identities=9% Similarity=0.139 Sum_probs=32.6
Q ss_pred HHHHchHHHHHHHHhcCCCCeEEEecCCCchh----------HHHHhHcCCCcEEE
Q 039701 101 AIEMLRLPLETLFKEIQPKPGCLISDVCLPWT----------VSSACKFNVPRIVF 146 (476)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~----------~~~A~~~giP~v~~ 146 (476)
..+...+.+.+++++ .+||++|+-+.+.++ ..+.++++||.+.-
T Consensus 60 n~eea~~~i~~mv~k--~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 60 NLEEAKAKVLEMIKG--ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred CHHHHHHHHHHHHHh--cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 345566788888888 899999999855322 13566799999983
No 348
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.38 E-value=72 Score=23.78 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCc--cChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 8 QLHFILFPFLAQ--GHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 8 ~~~vl~~~~p~~--GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
|-+|+++|.... .+..-...|+..|++.|..|.+-..
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 357888887643 4667788999999999999988543
No 349
>PRK13054 lipid kinase; Reviewed
Probab=35.37 E-value=1.8e+02 Score=27.55 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHc-----
Q 039701 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSN----- 369 (476)
Q Consensus 295 ~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~----- 369 (476)
..+..++..+++.+..+.+...........+. ........++ +|..||-||+.|++..
T Consensus 18 ~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a---------------~~~~~~~~d~--vvv~GGDGTl~evv~~l~~~~ 80 (300)
T PRK13054 18 EELREAVGLLREEGHTLHVRVTWEKGDAARYV---------------EEALALGVAT--VIAGGGDGTINEVATALAQLE 80 (300)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCcHHHHH---------------HHHHHcCCCE--EEEECCccHHHHHHHHHHhhc
Confidence 45556777888877776554433221111111 1112233455 9999999999998644
Q ss_pred -C--CCEecccc
Q 039701 370 -G--LPMVTWPF 378 (476)
Q Consensus 370 -G--vP~l~~P~ 378 (476)
+ +|+-++|.
T Consensus 81 ~~~~~~lgiiP~ 92 (300)
T PRK13054 81 GDARPALGILPL 92 (300)
T ss_pred cCCCCcEEEEeC
Confidence 3 58999997
No 350
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=35.34 E-value=3.2e+02 Score=25.18 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=55.9
Q ss_pred HHHHHHHHHHCC-CeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHHHHHHHH
Q 039701 25 MIDIARLLAQHG-ALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIE 103 (476)
Q Consensus 25 ~l~La~~L~~rG-H~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (476)
+-..++.|.+.+ .+|.+.+.....+.+... . ..+..+-+.-+|.+..+.+++. ..+..+..
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~~-~---~~~~r~~~RvLp~~~~~~g~~~--------------~~iia~~G 179 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVPA-P---LPGERLFARVLPTPESALGFPP--------------KNIIAMQG 179 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhhc-c---cCCCEEEEEECCCccccCCCCh--------------hhEEEEeC
Confidence 456677777777 677776666666655431 0 1132344444453322211111 11111111
Q ss_pred Hc-hHHHHHHHHhcCCCCeEEEecCCCc----hhHHHHhHcCCCcEEE
Q 039701 104 ML-RLPLETLFKEIQPKPGCLISDVCLP----WTVSSACKFNVPRIVF 146 (476)
Q Consensus 104 ~~-~~~l~~~l~~~~~~~D~vI~D~~~~----~~~~~A~~~giP~v~~ 146 (476)
.+ .+.=.+++++ .+.|+||+-..-. .=..+|+.+|||++++
T Consensus 180 Pfs~e~n~al~~~--~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 180 PFSKELNRALFRQ--YGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred CCCHHHHHHHHHH--cCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 11 2233557777 8999999766432 2268999999999985
No 351
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=35.33 E-value=55 Score=29.63 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 21 HMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 21 Hv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
|+..+...|.+|.++|++|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5667889999999999999999876
No 352
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=35.29 E-value=69 Score=28.38 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeC-CcchhhhhhH
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT-PMNAARFQNV 54 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~-~~~~~~~~~~ 54 (476)
++||.+-..|+-|-.+-++.=|++|.++|.+|.+..- +...+...+.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l 52 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEAL 52 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHH
Confidence 7999999999999999999999999999999998644 3344444444
No 353
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=35.28 E-value=5.1e+02 Score=26.53 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.0
Q ss_pred CccChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 18 AQGHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 18 ~~GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
.-|-..=...|++.|+++|.+|..+-+
T Consensus 9 ~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 9 SAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 357778889999999999999998755
No 354
>PRK04940 hypothetical protein; Provisional
Probab=35.19 E-value=88 Score=27.19 Aligned_cols=32 Identities=6% Similarity=0.039 Sum_probs=26.6
Q ss_pred CCeEEEecCCC-chhHHHHhHcCCCcEEEecch
Q 039701 119 KPGCLISDVCL-PWTVSSACKFNVPRIVFHGFS 150 (476)
Q Consensus 119 ~~D~vI~D~~~-~~~~~~A~~~giP~v~~~~~~ 150 (476)
+++++|..+.- +|+..+|+++|+|.|.+.|.-
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 57788888875 799999999999999975553
No 355
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=35.11 E-value=1.1e+02 Score=27.78 Aligned_cols=113 Identities=13% Similarity=0.039 Sum_probs=67.5
Q ss_pred cccccccccCCCCCceEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHh
Q 039701 266 GSGCLKWLDSWQPGSAVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVI 345 (476)
Q Consensus 266 ~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~l 345 (476)
-++..+.|..+.+| ||..|-...+++++.++.+.+.. +.+++++...-. +++ .+-..
T Consensus 86 ~eD~~~ll~aGADK----VSINsaAv~~p~lI~~~a~~FGs--QciVvaIDakr~-~~g-------~~~~~--------- 142 (256)
T COG0107 86 VEDARKLLRAGADK----VSINSAAVKDPELITEAADRFGS--QCIVVAIDAKRV-PDG-------ENGWY--------- 142 (256)
T ss_pred HHHHHHHHHcCCCe----eeeChhHhcChHHHHHHHHHhCC--ceEEEEEEeeec-cCC-------CCCcE---------
Confidence 35677888888888 67777777778877777766532 455555543221 000 00000
Q ss_pred hhCCCceeeecccChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHH
Q 039701 346 LSHPAIGGFLTHCGWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKA 425 (476)
Q Consensus 346 l~~~~~~~~I~HgG~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~ 425 (476)
- +.+|||-- +...|--.||+.+ |++|+|.-+-.. ++.++++++- .=+|.++
T Consensus 143 -----~--v~~~gGr~---------------~t~~d~~~Wa~~~-e~~GAGEIlLts----mD~DGtk~Gy--Dl~l~~~ 193 (256)
T COG0107 143 -----E--VFTHGGRE---------------DTGLDAVEWAKEV-EELGAGEILLTS----MDRDGTKAGY--DLELTRA 193 (256)
T ss_pred -----E--EEecCCCc---------------CCCcCHHHHHHHH-HHcCCceEEEee----ecccccccCc--CHHHHHH
Confidence 1 77888843 2557888999999 799999888543 3333332221 1245566
Q ss_pred HHHHh
Q 039701 426 INMLM 430 (476)
Q Consensus 426 i~~ll 430 (476)
|+...
T Consensus 194 v~~~v 198 (256)
T COG0107 194 VREAV 198 (256)
T ss_pred HHHhC
Confidence 66654
No 356
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=34.97 E-value=48 Score=31.37 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=25.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
+||+|+-.++.|- .+|..|+++||+|+++..
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHHCCCceEEEec
Confidence 4688888887774 578889999999999986
No 357
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=34.86 E-value=3e+02 Score=23.76 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=57.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEE---eCC-cchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIV---TTP-MNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCE 84 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~---~~~-~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~ 84 (476)
--|.+++-.+.|-..-.+.+|-+.+.+|++|.++ -.. ...+ . ..+++ .++.+..... ++.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE-~-~~l~~-----~~~~~~~~g~---------g~~ 69 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGE-R-AAFEP-----HGVEFQVMGT---------GFT 69 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccCh-H-HHHHh-----cCcEEEECCC---------CCe
Confidence 4688888899999999999999999999999654 322 1111 1 11111 1466665431 111
Q ss_pred CCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC
Q 039701 85 SWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCL 129 (476)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~ 129 (476)
... .+. . .-...........++.+.+ .++|+||.|-..
T Consensus 70 ~~~-~~~-~---~~~~~~~~~~~~a~~~l~~--~~~DlvVLDEi~ 107 (173)
T TIGR00708 70 WET-QNR-E---ADTAIAKAAWQHAKEMLAD--PELDLVLLDELT 107 (173)
T ss_pred ecC-CCc-H---HHHHHHHHHHHHHHHHHhc--CCCCEEEehhhH
Confidence 000 001 1 1122233444555566666 899999999875
No 358
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=34.83 E-value=2.8e+02 Score=23.34 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=68.8
Q ss_pred EEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChh
Q 039701 282 VYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWN 361 (476)
Q Consensus 282 v~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~ 361 (476)
|-|-+||.. +....+++...|++.+..+-..+.+-...++.+.+.. ...+- ..+++ ||.=.|..
T Consensus 3 V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~-----------~~~~~-~~~~v--iIa~AG~~ 66 (150)
T PF00731_consen 3 VAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFV-----------KEYEA-RGADV--IIAVAGMS 66 (150)
T ss_dssp EEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHH-----------HHTTT-TTESE--EEEEEESS
T ss_pred EEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHH-----------HHhcc-CCCEE--EEEECCCc
Confidence 556677765 4567777888888888666555544433344443311 10000 12334 77776643
Q ss_pred ----hHHHHHHcCCCEecccccccchh----hHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhcCC
Q 039701 362 ----SVLEAVSNGLPMVTWPFFADQFC----NEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMDEG 433 (476)
Q Consensus 362 ----s~~eal~~GvP~l~~P~~~DQ~~----~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~~~ 433 (476)
++.-++ .-.|+|.+|....+.. ....+.-=-|++...-.- +...++..+...|-.+ .|+
T Consensus 67 a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-----------~~~~nAA~~A~~ILa~-~d~ 133 (150)
T PF00731_consen 67 AALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-----------NNGFNAALLAARILAL-KDP 133 (150)
T ss_dssp --HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-----------THHHHHHHHHHHHHHT-T-H
T ss_pred ccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-----------cCchHHHHHHHHHHhc-CCH
Confidence 333333 3899999999776432 122221112444333221 0134555555555444 345
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 039701 434 EERDERRRRAREYGETAKT 452 (476)
Q Consensus 434 ~~~~~~r~~a~~l~~~~~~ 452 (476)
+++++.++.+++.++
T Consensus 134 ----~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 134 ----ELREKLRAYREKMKE 148 (150)
T ss_dssp ----HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHc
Confidence 777777777777664
No 359
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=34.81 E-value=59 Score=29.61 Aligned_cols=43 Identities=7% Similarity=-0.066 Sum_probs=31.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHC--CCeEEEEeCCcchhhhhh
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTPMNAARFQN 53 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~r--GH~Vt~~~~~~~~~~~~~ 53 (476)
|++--.|+.+=+.=.+.|.+.|.++ ||+|.++.+......+..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 4544444444447899999999999 999999998855444443
No 360
>PRK07206 hypothetical protein; Provisional
Probab=34.71 E-value=1.6e+02 Score=29.29 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=24.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
++|+++-....| ..+++++.++|+++..+...
T Consensus 3 k~~liv~~~~~~-----~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSSG-----KFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCchH-----HHHHHHHHHcCCeEEEEEcC
Confidence 478888754333 46899999999999888765
No 361
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=34.66 E-value=48 Score=28.74 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcch
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNA 48 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~ 48 (476)
...++|+-.++.|-..=..++|+++.++|+.|.|+..+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 45799999999999999999999999999999999876433
No 362
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=34.65 E-value=5.6e+02 Score=28.83 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=60.6
Q ss_pred ccccHH---HhhhCCCceeeec---ccChhhHH-HHHHcCC---CEecccccccchhhHHHHHHhhc-ceEEeccCCCCC
Q 039701 338 GWAPQV---VILSHPAIGGFLT---HCGWNSVL-EAVSNGL---PMVTWPFFADQFCNEKLVVQVLR-IGVTIGAERPPS 406 (476)
Q Consensus 338 ~~vpq~---~ll~~~~~~~~I~---HgG~~s~~-eal~~Gv---P~l~~P~~~DQ~~~a~~v~e~~g-~G~~l~~~~~~~ 406 (476)
..+|+. +++..+++ ++- .-|+|-+. |+++++. -+++++-+. -.. +.+| -|+.+++
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa------Gaa-~~L~~~AllVNP----- 511 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA------GAA-QSLGAGAILVNP----- 511 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCC------chH-HHhCCceEEECC-----
Confidence 345544 46677777 554 34887554 9999965 222223222 222 3444 3556655
Q ss_pred CcccccCCcccchhHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 039701 407 LADEERNGVPVKKEDVKKAINMLMD-EGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQ 473 (476)
Q Consensus 407 ~~~~~~~~~~~t~~~l~~~i~~ll~-~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~ 473 (476)
.+.++++++|.++|+ +++ +-+++.+++.+..+ .-+...=++.|++++.+
T Consensus 512 ----------~D~~~vA~AI~~AL~M~~~---Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~~ 561 (934)
T PLN03064 512 ----------WNITEVAASIAQALNMPEE---EREKRHRHNFMHVT-----THTAQEWAETFVSELND 561 (934)
T ss_pred ----------CCHHHHHHHHHHHHhCCHH---HHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHHH
Confidence 488999999999887 443 33344444444433 34555667777777764
No 363
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=34.62 E-value=31 Score=31.64 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCc
Q 039701 24 PMIDIARLLAQHGALVTIVTTPM 46 (476)
Q Consensus 24 P~l~La~~L~~rGH~Vt~~~~~~ 46 (476)
-.-.|+++|+++||+|+++++-.
T Consensus 21 v~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHhcCCeEEEEEccc
Confidence 35589999999999999999754
No 364
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=34.19 E-value=2.8e+02 Score=25.51 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=55.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHHHHHHHHH
Q 039701 25 MIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAIEM 104 (476)
Q Consensus 25 ~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (476)
+-.+++.+.+.|-+|.+.+...+...+....... .+-+.-+|.+... ..+.... .+. ..+..+.-.
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~~~~-----~~~~Rvlp~~~~~----~~~~~~~-~p~----~~Iia~~GP 182 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNLAHFVAADAHS-----HVLARVLPPPDVL----AKCEDLG-VPP----ARIIAMRGP 182 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccchHHHhcCcccc-----eEEEEEcCchHHH----HHHHhcC-CCh----hhEEEecCC
Confidence 3456666667777777777777777666653210 2333333322111 0000000 000 011111111
Q ss_pred ch-HHHHHHHHhcCCCCeEEEecCCCc-----hhHHHHhHcCCCcEEE
Q 039701 105 LR-LPLETLFKEIQPKPGCLISDVCLP-----WTVSSACKFNVPRIVF 146 (476)
Q Consensus 105 ~~-~~l~~~l~~~~~~~D~vI~D~~~~-----~~~~~A~~~giP~v~~ 146 (476)
+. +.=+.++++ ++.|+||+-..-- .=..+|+++|||++++
T Consensus 183 fs~~~n~all~q--~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 183 FSEEDNKALLEQ--YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred cChHHHHHHHHH--hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 22 223456777 8999999876432 2268999999999985
No 365
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=33.91 E-value=3.9e+02 Score=24.74 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCCCCCCcCcHHHHHHHH
Q 039701 23 IPMIDIARLLAQHGALVTIVTTPMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWDKLPSMALLPKFFAAI 102 (476)
Q Consensus 23 ~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (476)
.-+..|++.|.++|++|.++..+...+..+...+... + -..+ ... .. .
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~--~--~~~~----------------~~~--~~-~--------- 187 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIAAALG--G--PRVV----------------NLA--GK-T--------- 187 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcC--C--Cccc----------------cCc--CC-C---------
Confidence 4678999999999999999888766555544422000 0 0000 000 00 0
Q ss_pred HHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecch
Q 039701 103 EMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFS 150 (476)
Q Consensus 103 ~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~ 150 (476)
...++..+++ +.|++|+-- .+...+|..+|+|++.++...
T Consensus 188 --~l~e~~~li~----~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~~ 227 (279)
T cd03789 188 --SLRELAALLA----RADLVVTND--SGPMHLAAALGTPTVALFGPT 227 (279)
T ss_pred --CHHHHHHHHH----hCCEEEeeC--CHHHHHHHHcCCCEEEEECCC
Confidence 1123445554 589988644 367889999999999986643
No 366
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.87 E-value=59 Score=32.23 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=35.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 53 (476)
..||++.-.++.|= .-...|.+.|.+.|++|.++.++...+.+..
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 45888888887665 5589999999999999999998866555543
No 367
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=33.73 E-value=61 Score=26.59 Aligned_cols=38 Identities=21% Similarity=0.046 Sum_probs=31.1
Q ss_pred EEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 039701 12 ILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (476)
Q Consensus 12 l~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~ 49 (476)
.++.++..--+.|..-++...++.|++|+++.+.-...
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~ 44 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLM 44 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHH
Confidence 34455788899999999999999999999998764433
No 368
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=33.43 E-value=1.6e+02 Score=28.65 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecc
Q 039701 108 PLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGF 149 (476)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~ 149 (476)
++..+++ +.|++|+.-. +...+|..+|+|+|.++..
T Consensus 255 el~ali~----~a~l~v~nDS--Gp~HlAaA~g~P~v~lfGp 290 (352)
T PRK10422 255 ELGALID----HAQLFIGVDS--APAHIAAAVNTPLICLFGA 290 (352)
T ss_pred HHHHHHH----hCCEEEecCC--HHHHHHHHcCCCEEEEECC
Confidence 4455554 5899997644 6799999999999998654
No 369
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=33.26 E-value=1.3e+02 Score=31.11 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=38.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVI 55 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~ 55 (476)
-+++...|+.|-..=+..++.+.+++|..|.+++.....+.+.+..
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~ 320 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNA 320 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHH
Confidence 4677788899999999999999999999999999887766665543
No 370
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=33.18 E-value=1.7e+02 Score=26.60 Aligned_cols=33 Identities=21% Similarity=0.117 Sum_probs=24.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
|+++++ ++.|.+- ..+|+.|+++|++|+++...
T Consensus 16 k~vlIt-Gas~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVT-GGNTGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 555665 5555554 68899999999999988765
No 371
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=33.04 E-value=1.8e+02 Score=27.39 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHc----
Q 039701 294 TRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSN---- 369 (476)
Q Consensus 294 ~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~---- 369 (476)
.+....+.+.+++.+..+.+....... ...+ .+. ...-..+++ +|.-||-||+.|++..
T Consensus 18 ~~~~~~i~~~l~~~~~~~~~~~t~~~~---~~~~-----------~~~-~~~~~~~d~--ivv~GGDGTl~~v~~~l~~~ 80 (293)
T TIGR00147 18 NKPLREVIMLLREEGMEIHVRVTWEKG---DAAR-----------YVE-EARKFGVDT--VIAGGGDGTINEVVNALIQL 80 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcc---cHHH-----------HHH-HHHhcCCCE--EEEECCCChHHHHHHHHhcC
Confidence 345566778888877776543322210 0111 000 111123455 9999999999996532
Q ss_pred -CCCEe-cccc
Q 039701 370 -GLPMV-TWPF 378 (476)
Q Consensus 370 -GvP~l-~~P~ 378 (476)
..|.+ ++|.
T Consensus 81 ~~~~~lgiiP~ 91 (293)
T TIGR00147 81 DDIPALGILPL 91 (293)
T ss_pred CCCCcEEEEcC
Confidence 34444 4897
No 372
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=32.98 E-value=54 Score=30.44 Aligned_cols=39 Identities=5% Similarity=0.078 Sum_probs=25.4
Q ss_pred ceEEEecCCcccCC-HHHHHHHHHHHHh--CCCCeEEEEcCC
Q 039701 280 SAVYVCLGSLCDCS-TRQLIELGLGLEA--TKKPFIWVIRPG 318 (476)
Q Consensus 280 ~vv~vs~GS~~~~~-~~~~~~i~~a~~~--~~~~~i~~~~~~ 318 (476)
.++++||||+.... ...+..+.+.+++ .++.+-|+++++
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 37899999988754 4477778777765 578999998765
No 373
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.97 E-value=2.9e+02 Score=23.54 Aligned_cols=95 Identities=21% Similarity=0.208 Sum_probs=61.3
Q ss_pred HHHh-hhCCCceeeecccC---hhhHHHHHHcCCCEecccccc-cchhhHHHHHHhhcceEEeccCCCCCCcccccCCcc
Q 039701 342 QVVI-LSHPAIGGFLTHCG---WNSVLEAVSNGLPMVTWPFFA-DQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVP 416 (476)
Q Consensus 342 q~~l-l~~~~~~~~I~HgG---~~s~~eal~~GvP~l~~P~~~-DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~ 416 (476)
|..| -.||++.+-+--.| .-|+.|--.+|.=.+.==-+. =+..|+++. ++.|.=..+--+ .
T Consensus 65 rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVk-------------g 130 (176)
T COG3195 65 RLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVK-------------G 130 (176)
T ss_pred HHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeec-------------C
Confidence 4443 34777732222222 357788888887655311111 146799999 699998777666 5
Q ss_pred cchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 039701 417 VKKEDVKKAINMLMDEGEERDERRRRAREYGETAK 451 (476)
Q Consensus 417 ~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~ 451 (476)
.+.++|..+..+-|+|. +.++++..+.++....+
T Consensus 131 ~~k~~Il~a~~~Rl~n~-~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 131 NTKDTILAAFERRLDND-REQEFATALAEIERIAL 164 (176)
T ss_pred CCHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHH
Confidence 78999999999999874 55667766666655533
No 374
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=32.69 E-value=4.4e+02 Score=26.73 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=60.7
Q ss_pred EEEEcCC-CccChHHHHHHHHHHHHCCCeEEEEeCC-cchh-hhhhHhhhcccCCCceEEEEeeCCCcccCCCCCCCCCC
Q 039701 11 FILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTTP-MNAA-RFQNVIERGIQSGLRIQVIEFYFPCQEVGLPEGCESWD 87 (476)
Q Consensus 11 vl~~~~p-~~GHv~P~l~La~~L~~rGH~Vt~~~~~-~~~~-~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~~~~~~~ 87 (476)
|++.... .-|-..-...|++.|+++|++|..+-+. .+.+ .+-... .| .+. ...
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D~~~~~~~-----~g----------------~~~--~~l- 57 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYIDPMFHTQA-----TG----------------RPS--RNL- 57 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCCHHHHHHH-----hC----------------Cch--hhC-
Confidence 4555444 4688889999999999999999988542 1111 000000 00 000 000
Q ss_pred CCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC------------chhHHHHhHcCCCcEEEecchH
Q 039701 88 KLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCL------------PWTVSSACKFNVPRIVFHGFSC 151 (476)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~------------~~~~~~A~~~giP~v~~~~~~~ 151 (476)
+. +. ...+.+.+.+.+...+.|++|++... .....+|+.++.|++.+.....
T Consensus 58 -----d~---~~----~~~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 58 -----DS---FF----MSEAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred -----Cc---cc----CCHHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 00 00 01334444444434578999976641 1367999999999999986653
No 375
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.67 E-value=34 Score=31.84 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCCceeeecccChhhHHHHHH------cCCCEecccc
Q 039701 348 HPAIGGFLTHCGWNSVLEAVS------NGLPMVTWPF 378 (476)
Q Consensus 348 ~~~~~~~I~HgG~~s~~eal~------~GvP~l~~P~ 378 (476)
.+++ +|+-||-||+..|+. .++|++.+-.
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 3566 999999999999976 4788887765
No 376
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=32.56 E-value=3.6e+02 Score=25.99 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=30.5
Q ss_pred EEEEEc-CCCccChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 039701 10 HFILFP-FLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (476)
Q Consensus 10 ~vl~~~-~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~ 49 (476)
||+|++ =|+-|-..=..++|-.|++.|.+|.++++...+.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 566555 3477888888899999999999887887765444
No 377
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=32.50 E-value=2.2e+02 Score=25.51 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=22.4
Q ss_pred CccChHHHH---HHHHHHHHCCCeEEEEeCC
Q 039701 18 AQGHMIPMI---DIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 18 ~~GHv~P~l---~La~~L~~rGH~Vt~~~~~ 45 (476)
=.||+.+++ -|++-|+.+|++|.|++.-
T Consensus 35 HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~ 65 (213)
T cd00672 35 HIGHARTYVVFDVLRRYLEDLGYKVRYVQNI 65 (213)
T ss_pred ccccchhHHHHHHHHHHHHhcCCeeEEEeec
Confidence 459998887 4677778889999998764
No 378
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=32.45 E-value=1.3e+02 Score=31.69 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=21.9
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
.+++++|.|- +++++|...++|+|++-
T Consensus 73 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 105 (569)
T PRK09259 73 PGVCLTVSAPGFLNGLTALANATTNCFPMIMIS 105 (569)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEE
Confidence 4448998875 47889999999999885
No 379
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=32.25 E-value=1.1e+02 Score=24.32 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=33.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCc
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~ 46 (476)
||++..-++.|-..-...|++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4888899999999999999999999999999887654
No 380
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=32.17 E-value=1.7e+02 Score=29.31 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=29.1
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHHCCCeEEEE-eCCcch
Q 039701 10 HFILFPF-LAQGHMIPMIDIARLLAQHGALVTIV-TTPMNA 48 (476)
Q Consensus 10 ~vl~~~~-p~~GHv~P~l~La~~L~~rGH~Vt~~-~~~~~~ 48 (476)
+|+|... .+.|-..-.+.|.+.|++||++|-=+ +.|++.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYI 42 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYI 42 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCcc
Confidence 3455443 37799999999999999999999744 555443
No 381
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=31.83 E-value=60 Score=32.62 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEE
Q 039701 107 LPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVF 146 (476)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~ 146 (476)
.++.+.+++ .+||++|.... ...+|+++|||++.+
T Consensus 359 ~e~~~~i~~--~~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 359 YELEEFVKR--LKPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred HHHHHHHHH--hCCCEEEecCc---chhhhhhcCCCeEeC
Confidence 455667777 79999999876 566899999999875
No 382
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=31.67 E-value=67 Score=26.59 Aligned_cols=28 Identities=29% Similarity=0.202 Sum_probs=20.7
Q ss_pred HHHHHHHHCCCeEEEEeCCcchhhhhhH
Q 039701 27 DIARLLAQHGALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 27 ~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 54 (476)
-+|..|++.||+|++++.....+.+++.
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred HHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 4789999999999999987533334433
No 383
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=31.66 E-value=2.6e+02 Score=29.70 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCchhHHHHh-cCCCeEeec--------ccc--HHHhhhCCCceeeecccChh-----
Q 039701 298 IELGLGLEATKKPFIWVIRPGDQAFEKFEERI-EGRGLLIRG--------WAP--QVVILSHPAIGGFLTHCGWN----- 361 (476)
Q Consensus 298 ~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~nv~~~~--------~vp--q~~ll~~~~~~~~I~HgG~~----- 361 (476)
+.|++.|++.+.+.++.+.+... ..+-+.+ ..+++.+.. +.- +..+-.++.+ +++|.|-|
T Consensus 35 ~~l~~~L~~~GV~~vFgipG~~~--~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv--~~~t~GPG~~N~l 110 (612)
T PRK07789 35 QAVVRSLEELGVDVVFGIPGGAI--LPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGV--CMATSGPGATNLV 110 (612)
T ss_pred HHHHHHHHHCCCCEEEEcCCcch--HHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEE--EEECCCccHHHHH
Confidence 45677777777777777655531 1111111 111222111 111 1112233444 99998854
Q ss_pred -hHHHHHHcCCCEeccc
Q 039701 362 -SVLEAVSNGLPMVTWP 377 (476)
Q Consensus 362 -s~~eal~~GvP~l~~P 377 (476)
++.+|-..++|+|++-
T Consensus 111 ~gl~~A~~~~~PllvI~ 127 (612)
T PRK07789 111 TPIADANMDSVPVVAIT 127 (612)
T ss_pred HHHHHHhhcCCCEEEEe
Confidence 7789999999999995
No 384
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=31.44 E-value=57 Score=31.52 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=27.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
+||+|+-.|..|. .+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecH
Confidence 5899999888884 5788999999999998754
No 385
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=31.37 E-value=1.2e+02 Score=26.34 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQH 35 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~r 35 (476)
++++++ .|+.||.-=+++|-+.|.++
T Consensus 39 ~~~lVv-lGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 39 LSTLVV-LGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred ceEEEE-EcCCCcHHHHHHHHHHHHhh
Confidence 355554 59999999999999999776
No 386
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=31.32 E-value=2.8e+02 Score=29.22 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=22.8
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEecccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
.+++++|.|- +++++|...++|+|++--
T Consensus 77 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G 110 (585)
T CHL00099 77 VGVCFATSGPGATNLVTGIATAQMDSVPLLVITG 110 (585)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEec
Confidence 4449999885 478899999999999953
No 387
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=31.31 E-value=98 Score=27.15 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=28.2
Q ss_pred hHHHHHHHHhcCCCCeEEEecCC--CchhHHHHhHcCCCcEEE
Q 039701 106 RLPLETLFKEIQPKPGCLISDVC--LPWTVSSACKFNVPRIVF 146 (476)
Q Consensus 106 ~~~l~~~l~~~~~~~D~vI~D~~--~~~~~~~A~~~giP~v~~ 146 (476)
...+.+.+++ .++|+|++=.. .+.+..+|..+|+|++.+
T Consensus 39 ~~~la~~~~~--~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~v 79 (189)
T PRK09219 39 GKEFARRFKD--EGITKILTIEASGIAPAVMAALALGVPVVFA 79 (189)
T ss_pred HHHHHHHhcc--CCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 3344444455 68999996442 367899999999999985
No 388
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.29 E-value=1e+02 Score=28.78 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=25.7
Q ss_pred HHHhhhCCCceeeecccChhhHHHHHH----cCCCEecccc
Q 039701 342 QVVILSHPAIGGFLTHCGWNSVLEAVS----NGLPMVTWPF 378 (476)
Q Consensus 342 q~~ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~ 378 (476)
+..+...+++ +|+=||-||+..++. .++|++.+-.
T Consensus 36 ~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~ 74 (272)
T PRK02231 36 LEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINR 74 (272)
T ss_pred hHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC
Confidence 3444445677 999999999998855 3678777654
No 389
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=31.26 E-value=68 Score=33.17 Aligned_cols=36 Identities=8% Similarity=0.200 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEe
Q 039701 107 LPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFH 147 (476)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~ 147 (476)
.++.+.+++ .+||+||.+.. ...+|+++|||++.++
T Consensus 364 ~ei~~~I~~--~~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIAR--VEPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHh--cCCCEEEECch---hhHHHHHhCCCEEEee
Confidence 344556666 78999999973 4556899999998753
No 390
>PRK06270 homoserine dehydrogenase; Provisional
Probab=31.19 E-value=3.5e+02 Score=26.20 Aligned_cols=164 Identities=10% Similarity=0.066 Sum_probs=0.0
Q ss_pred ceEEEecCCcccCCHHHHHHHHHHHHhC---CCCeEEEEc------CCCCCchhHHHHhcCCCeEeeccc------cHHH
Q 039701 280 SAVYVCLGSLCDCSTRQLIELGLGLEAT---KKPFIWVIR------PGDQAFEKFEERIEGRGLLIRGWA------PQVV 344 (476)
Q Consensus 280 ~vv~vs~GS~~~~~~~~~~~i~~a~~~~---~~~~i~~~~------~~~~~~~~~~~~~~~~nv~~~~~v------pq~~ 344 (476)
.+..+.+|++...-.+.+...-+.+.+. +.+++-... ........-.......+-.+..+- +..+
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 83 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLE 83 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHH
Q ss_pred hhhCCCceeeec------ccC---hhhHHHHHHcCCCEec---ccccccchhhHHHHHHhhcceEEeccCCCCCCccccc
Q 039701 345 ILSHPAIGGFLT------HCG---WNSVLEAVSNGLPMVT---WPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEER 412 (476)
Q Consensus 345 ll~~~~~~~~I~------HgG---~~s~~eal~~GvP~l~---~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~ 412 (476)
++..++...+|- |+| ..-+.+||.+|+++|+ -|+...-....... ++.|+.......
T Consensus 84 ll~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A-~~~g~~~~~ea~---------- 152 (341)
T PRK06270 84 VIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELA-KKNGVRFRYEAT---------- 152 (341)
T ss_pred HhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHH-HHcCCEEEEeee----------
Q ss_pred CCcccchhHHHHHHHHHhcCChhhH--------------HHHHHHHHHHHHHHHHHhhC
Q 039701 413 NGVPVKKEDVKKAINMLMDEGEERD--------------ERRRRAREYGETAKTAIEEG 457 (476)
Q Consensus 413 ~~~~~t~~~l~~~i~~ll~~~~~~~--------------~~r~~a~~l~~~~~~~~~~g 457 (476)
....-=+.+.+++++...+-++ +|.++-..+.+.+++|-+.|
T Consensus 153 ---v~~glPii~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~~~g~~f~~al~~Aq~~G 208 (341)
T PRK06270 153 ---VGGAMPIINLAKETLAGNDIKSIKGILNGTTNYILTRMEEEGLSYEQALAEAQELG 208 (341)
T ss_pred ---eeechhHHHHHHhhcccCceEEEEEEEeCcHHHHHHHHhhcCCCHHHHHHHHHHcC
No 391
>PRK13337 putative lipid kinase; Reviewed
Probab=31.13 E-value=2e+02 Score=27.35 Aligned_cols=67 Identities=13% Similarity=0.037 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHc-----
Q 039701 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSN----- 369 (476)
Q Consensus 295 ~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~----- 369 (476)
.....+...+++.+..+.+...........+.. ...-...++ +|.-||-||+.|++-.
T Consensus 19 ~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~---------------~~~~~~~d~--vvv~GGDGTl~~vv~gl~~~~ 81 (304)
T PRK13337 19 KNLPDVLQKLEQAGYETSAHATTGPGDATLAAE---------------RAVERKFDL--VIAAGGDGTLNEVVNGIAEKE 81 (304)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHH---------------HHHhcCCCE--EEEEcCCCHHHHHHHHHhhCC
Confidence 445567777887777654433222211111111 111122345 9999999999998752
Q ss_pred -CCCEecccc
Q 039701 370 -GLPMVTWPF 378 (476)
Q Consensus 370 -GvP~l~~P~ 378 (476)
..|+-++|.
T Consensus 82 ~~~~lgiiP~ 91 (304)
T PRK13337 82 NRPKLGIIPV 91 (304)
T ss_pred CCCcEEEECC
Confidence 357889997
No 392
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=31.06 E-value=2.7e+02 Score=29.58 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=22.7
Q ss_pred CceeeecccCh------hhHHHHHHcCCCEeccc
Q 039701 350 AIGGFLTHCGW------NSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 350 ~~~~~I~HgG~------~s~~eal~~GvP~l~~P 377 (476)
..+++++|.|- +++.+|...++|+|++-
T Consensus 85 k~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~ 118 (616)
T PRK07418 85 KVGVCFGTSGPGATNLVTGIATAQMDSVPMVVIT 118 (616)
T ss_pred CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 34449999884 57889999999999983
No 393
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=30.98 E-value=78 Score=31.53 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=35.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 53 (476)
..||++.-.++. ...=...|.++|.+.|++|.++.++.....+..
T Consensus 6 ~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 6 GKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 568998888876 455778999999999999999998866555543
No 394
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=30.85 E-value=62 Score=22.80 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=16.5
Q ss_pred HHHHHHHHHCCCeEEEEeCC
Q 039701 26 IDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 26 l~La~~L~~rGH~Vt~~~~~ 45 (476)
+..|..|+++|++|+++=..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56788999999999998543
No 395
>PLN02939 transferase, transferring glycosyl groups
Probab=30.59 E-value=84 Score=34.95 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=28.3
Q ss_pred CcEEEEEcCC--------CccChHHHHHHHHHHHHCCCeEEEEeCCc
Q 039701 8 QLHFILFPFL--------AQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (476)
Q Consensus 8 ~~~vl~~~~p--------~~GHv~P~l~La~~L~~rGH~Vt~~~~~~ 46 (476)
++||++++.= +.|++ .-.|.++|+++||+|.++.+-.
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDV--v~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADV--VSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCEEEEEEcccccccccccHHHH--HHHHHHHHHHcCCeEEEEeCCC
Confidence 6899998743 33333 4578999999999999999744
No 396
>PRK13059 putative lipid kinase; Reviewed
Probab=30.51 E-value=1.8e+02 Score=27.53 Aligned_cols=66 Identities=14% Similarity=-0.033 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHH---H---
Q 039701 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAV---S--- 368 (476)
Q Consensus 295 ~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal---~--- 368 (476)
+.+..+.+.+.+.+..+......... .... . ....-...++ +|.-||-||+.|++ .
T Consensus 19 ~~~~~i~~~l~~~g~~~~~~~~~~~~---~~~~-~------------~~~~~~~~d~--vi~~GGDGTv~evv~gl~~~~ 80 (295)
T PRK13059 19 SELDKVIRIHQEKGYLVVPYRISLEY---DLKN-A------------FKDIDESYKY--ILIAGGDGTVDNVVNAMKKLN 80 (295)
T ss_pred HHHHHHHHHHHHCCcEEEEEEccCcc---hHHH-H------------HHHhhcCCCE--EEEECCccHHHHHHHHHHhcC
Confidence 44556778888888776543322211 1100 0 1111223455 99999999988874 3
Q ss_pred cCCCEecccc
Q 039701 369 NGLPMVTWPF 378 (476)
Q Consensus 369 ~GvP~l~~P~ 378 (476)
.++|+-++|.
T Consensus 81 ~~~~lgviP~ 90 (295)
T PRK13059 81 IDLPIGILPV 90 (295)
T ss_pred CCCcEEEECC
Confidence 3589999997
No 397
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=30.42 E-value=1.9e+02 Score=26.12 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCccC----hHHHHHHHHHHHHCCCeEEEEeCCcc--hhhhhhHhhhcccCCCceEEEEeeCCCcccCCCC
Q 039701 8 QLHFILFPFLAQGH----MIPMIDIARLLAQHGALVTIVTTPMN--AARFQNVIERGIQSGLRIQVIEFYFPCQEVGLPE 81 (476)
Q Consensus 8 ~~~vl~~~~p~~GH----v~P~l~La~~L~~rGH~Vt~~~~~~~--~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~~~~ 81 (476)
+..|+|.+..+... ..-+..|++.|.++|.+|.++.++.. .+....... +..-....+. .
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~-----~~~~~~~~~~---------~ 170 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA-----GLQNPVINLA---------G 170 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT-----THTTTTEEET---------T
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH-----hcccceEeec---------C
Confidence 45677776554421 22368999999999988988887766 222222211 0000011100 0
Q ss_pred CCCCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecchH
Q 039701 82 GCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFSC 151 (476)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~~ 151 (476)
. . ...++..+++ ..|++|+--. +...+|..+|+|.+.++....
T Consensus 171 ---------~-~-----------~l~e~~ali~----~a~~~I~~Dt--g~~HlA~a~~~p~v~lfg~t~ 213 (247)
T PF01075_consen 171 ---------K-T-----------SLRELAALIS----RADLVIGNDT--GPMHLAAALGTPTVALFGPTN 213 (247)
T ss_dssp ---------T-S------------HHHHHHHHH----TSSEEEEESS--HHHHHHHHTT--EEEEESSS-
T ss_pred ---------C-C-----------CHHHHHHHHh----cCCEEEecCC--hHHHHHHHHhCCEEEEecCCC
Confidence 0 0 1223455554 5899996543 679999999999999876653
No 398
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=30.29 E-value=1.9e+02 Score=23.51 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=34.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARF 51 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~ 51 (476)
+|++-+..+.+|-.----++..|...|++|+.+...-..+.+
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~ 42 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEF 42 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 478889999999999999999999999999988664443333
No 399
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=30.04 E-value=95 Score=29.33 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=32.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
++|++.-=|+-|-..-.+.||..|+++|++|.++=-
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~ 36 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGC 36 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 358888889999999999999999999999998743
No 400
>PRK05380 pyrG CTP synthetase; Validated
Probab=30.03 E-value=6e+02 Score=26.41 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=31.9
Q ss_pred cEEEEEcCC---CccChHHHHHHHHHHHHCCCeEEEEeCCcc
Q 039701 9 LHFILFPFL---AQGHMIPMIDIARLLAQHGALVTIVTTPMN 47 (476)
Q Consensus 9 ~~vl~~~~p---~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~ 47 (476)
.|++|++-+ +.|-=.-.-+|+..|.+||++|+.+--.++
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpY 43 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 43 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccc
Confidence 368888877 667777888999999999999999866544
No 401
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=29.94 E-value=4.2e+02 Score=24.58 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=25.6
Q ss_pred CCCeEEE-ecCCC-chhHHHHhHcCCCcEEEecch
Q 039701 118 PKPGCLI-SDVCL-PWTVSSACKFNVPRIVFHGFS 150 (476)
Q Consensus 118 ~~~D~vI-~D~~~-~~~~~~A~~~giP~v~~~~~~ 150 (476)
..||+|| .|... ..+..=|.++|||.|.++-+.
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 5799766 66644 568888999999999986554
No 402
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=29.91 E-value=1.3e+02 Score=20.84 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=31.8
Q ss_pred cccchhHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHHHHH
Q 039701 415 VPVKKEDVKKAINMLMD--EGEERDERRRRAREYGETAKTAI 454 (476)
Q Consensus 415 ~~~t~~~l~~~i~~ll~--~~~~~~~~r~~a~~l~~~~~~~~ 454 (476)
+..+..+|.+.+.+.+. ++++++.|.+.+++..+...+++
T Consensus 24 p~~~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~ 65 (69)
T PF00505_consen 24 PDLSNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEM 65 (69)
T ss_dssp TTSTHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999875 35677789999999988887653
No 403
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=29.84 E-value=59 Score=30.63 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHc--
Q 039701 292 CSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSN-- 369 (476)
Q Consensus 292 ~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~-- 369 (476)
.+.+....|.+|+++...+.||.+.++.. -..+.+++++..+-.+|.. +|=..-..+++-+++.
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGGyg------------~~rlL~~ld~~~i~~~pK~--~iGySDiTaL~~al~~~~ 111 (284)
T PF02016_consen 46 SDEERAEDLNEAFADPEIDAIWCARGGYG------------ANRLLPYLDYDAIRKNPKI--FIGYSDITALHNALYAKT 111 (284)
T ss_dssp -HHHHHHHHHHHHHSTTEEEEEES--SS-------------GGGGGGGCHHHHHHHSG-E--EEE-GGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEeecccc------------HHHHHhcccccccccCCCE--EEEecchHHHHHHHHHhC
Confidence 35677778999999999999999988752 2444577777778778777 8877777777767654
Q ss_pred CCCEeccccc
Q 039701 370 GLPMVTWPFF 379 (476)
Q Consensus 370 GvP~l~~P~~ 379 (476)
|.+.+.=|..
T Consensus 112 g~~t~hGp~~ 121 (284)
T PF02016_consen 112 GLVTFHGPML 121 (284)
T ss_dssp TBEEEES--H
T ss_pred CCeEEEcchh
Confidence 5666656653
No 404
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=29.64 E-value=83 Score=20.17 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q 039701 418 KKEDVKKAINMLMDEGEERDERRRRAREYGE 448 (476)
Q Consensus 418 t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~ 448 (476)
|+++|..||..+.++. ..+++.|++..-
T Consensus 1 tee~l~~Ai~~v~~g~---~S~r~AA~~ygV 28 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK---MSIRKAAKKYGV 28 (45)
T ss_dssp -HHHHHHHHHHHHTTS---S-HHHHHHHHT-
T ss_pred CHHHHHHHHHHHHhCC---CCHHHHHHHHCc
Confidence 5688999999998642 378888877654
No 405
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=29.55 E-value=81 Score=32.68 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEe
Q 039701 108 PLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFH 147 (476)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~ 147 (476)
++.+.+++ .+||+||.+. ....+|+++|||++.++
T Consensus 353 el~~~i~~--~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAE--AAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHh--cCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 45556666 7899999876 45679999999998753
No 406
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=29.27 E-value=1.1e+02 Score=24.67 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=29.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
++++..+..++-.-+..+++.|+++|..|..+..+
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 35667787888888999999999999999988654
No 407
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=29.15 E-value=3.6e+02 Score=28.48 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=21.1
Q ss_pred ceeeecccC------hhhHHHHHHcCCCEeccc
Q 039701 351 IGGFLTHCG------WNSVLEAVSNGLPMVTWP 377 (476)
Q Consensus 351 ~~~~I~HgG------~~s~~eal~~GvP~l~~P 377 (476)
.++++.|.| .+.+.+|-..++|+|++-
T Consensus 68 ~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~ 100 (588)
T TIGR01504 68 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 100 (588)
T ss_pred eEEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 444766655 468889999999999994
No 408
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.12 E-value=5e+02 Score=24.53 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=30.1
Q ss_pred CeEeeccccHH---HhhhCCCceeeecccChhhHHHHHHcCCCEe
Q 039701 333 GLLIRGWAPQV---VILSHPAIGGFLTHCGWNSVLEAVSNGLPMV 374 (476)
Q Consensus 333 nv~~~~~vpq~---~ll~~~~~~~~I~HgG~~s~~eal~~GvP~l 374 (476)
.+.+..|+||. .||--|++ -+-. |--|+-.|..+|.|.+
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPfl 280 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFL 280 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcE
Confidence 56677899976 48877887 3333 5679999999999987
No 409
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=29.07 E-value=42 Score=30.86 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=22.5
Q ss_pred CCceeeecccChhhHHHHHHc----CCCEecccc
Q 039701 349 PAIGGFLTHCGWNSVLEAVSN----GLPMVTWPF 378 (476)
Q Consensus 349 ~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~ 378 (476)
+++ +|+-||-||+..++.. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 466 9999999999988664 678887665
No 410
>PRK06988 putative formyltransferase; Provisional
Probab=29.00 E-value=5.2e+02 Score=24.70 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
+||+|+..+. -.+...+.|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 5899986554 3355667778889999877664
No 411
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=28.76 E-value=2.6e+02 Score=23.86 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=20.5
Q ss_pred HHHHHHHH---CCCeEEEEeCCcchhhhhh
Q 039701 27 DIARLLAQ---HGALVTIVTTPMNAARFQN 53 (476)
Q Consensus 27 ~La~~L~~---rGH~Vt~~~~~~~~~~~~~ 53 (476)
.|++++.+ .+.+|.|+++|.-...+++
T Consensus 14 ~l~~~l~~~~~~~~~iaclstPsl~~~l~~ 43 (162)
T PF10237_consen 14 FLARELLDGALDDTRIACLSTPSLYEALKK 43 (162)
T ss_pred HHHHHHHHhcCCCCEEEEEeCcHHHHHHHh
Confidence 56677766 4778999999977776666
No 412
>PHA02698 hypothetical protein; Provisional
Probab=28.68 E-value=2e+02 Score=20.69 Aligned_cols=44 Identities=9% Similarity=0.219 Sum_probs=29.8
Q ss_pred cccchhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHhc
Q 039701 415 VPVKKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQA 475 (476)
Q Consensus 415 ~~~t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~~ 475 (476)
..-++++....+.+.|+|- .|+....-+... ..++++..|+.++
T Consensus 39 ~~CsPEdMs~mLD~FLedi----q~ksElqLLsqE-------------EMdELl~Eledla 82 (89)
T PHA02698 39 PQCSPEDMSDMLDNFLEDI----QYKSELQLLSQE-------------EMDELLVELEDLA 82 (89)
T ss_pred ccCCHHHHHHHHHHHHHHH----HHHHHHHHhhHH-------------HHHHHHHHHHHHH
Confidence 4678899999999999875 677665554433 3455555555554
No 413
>PRK08589 short chain dehydrogenase; Validated
Probab=28.58 E-value=2.4e+02 Score=26.00 Aligned_cols=33 Identities=27% Similarity=0.145 Sum_probs=23.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
++++++ ++.|.+- ..+|+.|+++|++|+++...
T Consensus 7 k~vlIt-Gas~gIG--~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 7 KVAVIT-GASTGIG--QASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CEEEEE-CCCchHH--HHHHHHHHHCCCEEEEEeCc
Confidence 466665 4444442 68899999999999988654
No 414
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=28.58 E-value=2.1e+02 Score=25.24 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=49.0
Q ss_pred HHHH-HHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCE
Q 039701 295 RQLI-ELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPM 373 (476)
Q Consensus 295 ~~~~-~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~ 373 (476)
+.++ .|.+.+.+.+..+|+..+.-......|.+++.. .++ ==||++ .=.++|..+..+|+.+|+..
T Consensus 65 ~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~g-rIl----------NIHPSL--LP~f~G~h~~~~A~~aG~k~ 131 (200)
T COG0299 65 EAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEG-RIL----------NIHPSL--LPAFPGLHAHEQALEAGVKV 131 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhc-ceE----------ecCccc--ccCCCCchHHHHHHHcCCCc
Confidence 4444 488999998888887776543222233333211 111 128888 88999999999999999998
Q ss_pred eccccc
Q 039701 374 VTWPFF 379 (476)
Q Consensus 374 l~~P~~ 379 (476)
-.+-++
T Consensus 132 sG~TVH 137 (200)
T COG0299 132 SGCTVH 137 (200)
T ss_pred cCcEEE
Confidence 777664
No 415
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=28.55 E-value=1.3e+02 Score=29.70 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=48.0
Q ss_pred ceeeecccChhhHHHHHHc------------C-----CCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccC
Q 039701 351 IGGFLTHCGWNSVLEAVSN------------G-----LPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERN 413 (476)
Q Consensus 351 ~~~~I~HgG~~s~~eal~~------------G-----vP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~ 413 (476)
..+++|.||..+.+.|+.+ | .|.+.++-.. ++-+.+-+ ..+|+|++.-+-+ .
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~lGlg~~~I~~~---------~ 172 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RILGLGVRKIPTD---------E 172 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HHTTSEEEEE-BB---------T
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-ceeeeEEEEecCC---------c
Confidence 5679999998888766532 3 4566665545 57777777 6999996553331 1
Q ss_pred CcccchhHHHHHHHHHhcC
Q 039701 414 GVPVKKEDVKKAINMLMDE 432 (476)
Q Consensus 414 ~~~~t~~~l~~~i~~ll~~ 432 (476)
++.++.++|+++|++..++
T Consensus 173 ~~~md~~~L~~~l~~~~~~ 191 (373)
T PF00282_consen 173 DGRMDIEALEKALEKDIAN 191 (373)
T ss_dssp TSSB-HHHHHHHHHHHHHT
T ss_pred chhhhHHHhhhhhcccccc
Confidence 4578999999999887654
No 416
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=28.39 E-value=1.1e+02 Score=26.85 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=28.8
Q ss_pred cEEEEEcCC--CccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 9 LHFILFPFL--AQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 9 ~~vl~~~~p--~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
+|++.++.+ +-|-..=...||..|+++|++|.++=..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 455555544 6678888999999999999999988443
No 417
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=28.36 E-value=81 Score=32.63 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEe
Q 039701 108 PLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFH 147 (476)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~ 147 (476)
++.+.+++ .+||+||.+. ....+|+++|||++.++
T Consensus 355 ei~~~i~~--~~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 355 EVADAIAA--LEPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred HHHHHHHh--cCCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 44455566 7899999986 45678999999998753
No 418
>PRK02399 hypothetical protein; Provisional
Probab=28.34 E-value=4.8e+02 Score=25.95 Aligned_cols=96 Identities=16% Similarity=0.071 Sum_probs=55.8
Q ss_pred CCceEEEec-CCcccCCHHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeE-eeccccHHHhhhCCCceeee
Q 039701 278 PGSAVYVCL-GSLCDCSTRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLL-IRGWAPQVVILSHPAIGGFL 355 (476)
Q Consensus 278 ~~~vv~vs~-GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~-~~~~vpq~~ll~~~~~~~~I 355 (476)
+||+|-+|+ |... .-...+.+.|++.++.+++....+.. -..++..+...-+- +.+...+.. -.+--- =|
T Consensus 185 ~kp~Ig~TmfGvTt----p~v~~~~~~Le~~GyEvlVFHATG~G-GraME~Li~~G~~~gVlDlTttEv-~d~l~G--Gv 256 (406)
T PRK02399 185 DKPLIGLTMFGVTT----PCVQAAREELEARGYEVLVFHATGTG-GRAMEKLIDSGLIAGVLDLTTTEV-CDELFG--GV 256 (406)
T ss_pred CCceEEEecCCCcH----HHHHHHHHHHHhCCCeEEEEcCCCCc-hHHHHHHHHcCCceEEEEcchHHH-HHHHhC--cC
Confidence 466766654 6543 56677888899999998887654431 01233333222222 334444332 111001 35
Q ss_pred cccChhhHHHHHHcCCCEeccccccc
Q 039701 356 THCGWNSVLEAVSNGLPMVTWPFFAD 381 (476)
Q Consensus 356 ~HgG~~s~~eal~~GvP~l~~P~~~D 381 (476)
..+|-.=+..|...|+|+|+.|-..|
T Consensus 257 ~sagp~Rl~Aa~~~gIP~Vvs~GalD 282 (406)
T PRK02399 257 LAAGPDRLEAAARTGIPQVVSPGALD 282 (406)
T ss_pred ccCCccHHHHHHHcCCCEEecCCcee
Confidence 56677788889999999998886444
No 419
>PRK05973 replicative DNA helicase; Provisional
Probab=28.27 E-value=1.3e+02 Score=27.56 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=39.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhh
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIE 56 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 56 (476)
=+++...|+.|-..-.+.++...+++|+.|.|++.+...+.+.....
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHH
Confidence 46788889999999999999999999999999998877665555433
No 420
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=28.27 E-value=98 Score=28.66 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=30.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEe
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~ 43 (476)
.|++.-=|+-|...=..+||..|+++|++|.++=
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD 35 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIG 35 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 5777777899999999999999999999999873
No 421
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=28.25 E-value=1.4e+02 Score=27.58 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=41.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhHhh
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNVIE 56 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~~~ 56 (476)
--+++.-.|+.|...-..+++...+++|..|.+++..+..+.+.+...
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~ 71 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENAR 71 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHH
Confidence 368888899999999999999999999999999999887776666544
No 422
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=28.21 E-value=99 Score=28.61 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=29.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEE
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIV 42 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~ 42 (476)
+|++..=|+-|-..=.++||..|+++|++|.++
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 577776778899999999999999999999988
No 423
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=27.99 E-value=87 Score=21.13 Aligned_cols=47 Identities=13% Similarity=0.247 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 039701 420 EDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDIL 472 (476)
Q Consensus 420 ~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~ 472 (476)
++|...+..+|. .+..+-..++..+-.-+++=|+..+.+|.-+.++-
T Consensus 2 ~elt~~v~~lL~------qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~ 48 (54)
T PF06825_consen 2 QELTAFVQNLLQ------QMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLM 48 (54)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----
T ss_pred hHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 578899999996 79999999999888777766666565665555544
No 424
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=27.81 E-value=2.9e+02 Score=28.44 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=25.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHC--CCeEEEEeCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQH--GALVTIVTTP 45 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~r--GH~Vt~~~~~ 45 (476)
+|||++-.+++.| +|++.|++. |++|.++-..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~ 34 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSY 34 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECC
Confidence 4799998888887 578888876 9998888543
No 425
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=27.71 E-value=1.1e+02 Score=28.46 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
++.|+|+. +..++-.-+..++..|.++||+|..+-.+
T Consensus 18 ~p~vvliH-G~~~~~~~w~~~~~~L~~~g~~vi~~dl~ 54 (273)
T PLN02211 18 PPHFVLIH-GISGGSWCWYKIRCLMENSGYKVTCIDLK 54 (273)
T ss_pred CCeEEEEC-CCCCCcCcHHHHHHHHHhCCCEEEEeccc
Confidence 55676666 44444445678888899999999877655
No 426
>PRK06835 DNA replication protein DnaC; Validated
Probab=27.54 E-value=90 Score=30.15 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=36.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhh
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARF 51 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~ 51 (476)
..++|+-.++.|-..=+.++|++|.++|+.|.|++.......+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 4688888889999998999999999999999999877544433
No 427
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=27.49 E-value=3.1e+02 Score=26.93 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=26.6
Q ss_pred eEEEecCCcccCCHHHHHHHHHHHHhCCCCeEEEEcCC
Q 039701 281 AVYVCLGSLCDCSTRQLIELGLGLEATKKPFIWVIRPG 318 (476)
Q Consensus 281 vv~vs~GS~~~~~~~~~~~i~~a~~~~~~~~i~~~~~~ 318 (476)
++++++|+.+. ..-+..++++|.+.|++|.+.+...
T Consensus 3 Il~~~~p~~GH--v~P~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 3 VLITTIGSRGD--VQPLVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred EEEEeCCCcch--HHHHHHHHHHHHHCCCeEEEeeCHh
Confidence 78888887653 3445568888889999988887643
No 428
>PRK14098 glycogen synthase; Provisional
Probab=27.45 E-value=88 Score=32.14 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=27.1
Q ss_pred cEEEEEcC--------CCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 9 LHFILFPF--------LAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 9 ~~vl~~~~--------p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
+||++++. ++.|++ .-+|.++|+++||+|.++.+-
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADF--MASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred cEEEEEeecchhhcccchHHHH--HHHHHHHHHHCCCeEEEEcCC
Confidence 68998874 344544 457889999999999999974
No 429
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=27.44 E-value=1.1e+02 Score=27.99 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
+.+|+++..=-.==..-+-.....|+++||+|++++-.
T Consensus 10 ~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 10 PLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred CCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 56777665333333344556677779999999988643
No 430
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=27.30 E-value=1.4e+02 Score=21.68 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=28.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCeEEEEe
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~ 43 (476)
+++...++.|-..-...||..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666788889999999999999999998776
No 431
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.15 E-value=95 Score=31.24 Aligned_cols=34 Identities=9% Similarity=0.253 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEe
Q 039701 109 LETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFH 147 (476)
Q Consensus 109 l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~ 147 (476)
+.+.+++ .+||++|.+.. ...+|+++|+|++.++
T Consensus 362 ~~~~i~~--~~pdliig~~~---~~~~a~~~gip~~~~~ 395 (430)
T cd01981 362 VGDMIAR--TEPELIFGTQM---ERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHh--hCCCEEEecch---hhHHHHHcCCCEEEEe
Confidence 4455566 78999999874 3457899999999853
No 432
>PRK12474 hypothetical protein; Provisional
Probab=27.02 E-value=3.4e+02 Score=28.10 Aligned_cols=77 Identities=16% Similarity=-0.002 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCCchhHHHHh-cCCCeEeec--------ccc--HHHhhhCCCceeeecccChh-----
Q 039701 298 IELGLGLEATKKPFIWVIRPGDQAFEKFEERI-EGRGLLIRG--------WAP--QVVILSHPAIGGFLTHCGWN----- 361 (476)
Q Consensus 298 ~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~nv~~~~--------~vp--q~~ll~~~~~~~~I~HgG~~----- 361 (476)
+.|++.|++.+.+.|+-+.+... ..+-+.+ ..+++.... +.- +..+=.++.+ +++|.|-|
T Consensus 9 ~~l~~~L~~~GV~~vFGvpG~~~--~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv--~~~t~GpG~~N~~ 84 (518)
T PRK12474 9 DSVVDTLLNCGVEVCFANPGTSE--MHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAV--TLLHLGPGLANGL 84 (518)
T ss_pred HHHHHHHHHCCCCEEEECCCcch--HHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEE--EEEccchhHhHhH
Confidence 44677777777777777765541 1121111 112222111 111 1112223444 88888854
Q ss_pred -hHHHHHHcCCCEecccc
Q 039701 362 -SVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 362 -s~~eal~~GvP~l~~P~ 378 (476)
.+.+|...++|+|++--
T Consensus 85 ~gl~~A~~d~~Pvl~i~G 102 (518)
T PRK12474 85 ANLHNARRAASPIVNIVG 102 (518)
T ss_pred HHHHHHhhcCCCEEEEec
Confidence 66789999999998853
No 433
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=26.98 E-value=2.7e+02 Score=24.38 Aligned_cols=71 Identities=13% Similarity=0.051 Sum_probs=38.3
Q ss_pred cccccccchhhHHHHHHhhcceEEeccCCCCCCcccccC---CcccchhHHH----HHHHHHhcCChhhHHHHHHHHHHH
Q 039701 375 TWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERN---GVPVKKEDVK----KAINMLMDEGEERDERRRRAREYG 447 (476)
Q Consensus 375 ~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~---~~~~t~~~l~----~~i~~ll~~~~~~~~~r~~a~~l~ 447 (476)
.+|.+.||...-..+-|-..+|+.-..- +.+++.- -..++.+.++ +.|.++|.|+ .+-+|-+|+.
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tI----L~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~----~IIRnr~KI~ 93 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITV----LKKRENYRACFHQFDPVKVAAMQEEDVERLVQDA----GIIRHRGKIQ 93 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHH----HHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc----hhHHhHHHHH
Confidence 4566788876655444666777554210 0000000 0245666665 6678888887 5666666665
Q ss_pred HHHHHH
Q 039701 448 ETAKTA 453 (476)
Q Consensus 448 ~~~~~~ 453 (476)
+.+.+|
T Consensus 94 Avi~NA 99 (187)
T PRK10353 94 AIIGNA 99 (187)
T ss_pred HHHHHH
Confidence 555543
No 434
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=26.93 E-value=97 Score=31.59 Aligned_cols=45 Identities=20% Similarity=0.098 Sum_probs=35.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhh
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQN 53 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~ 53 (476)
..||++...++.+= +=...|.++|.++||+|.++.++.....+..
T Consensus 70 ~k~IllgVtGsIAa-yka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIAA-YKALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHHH-HHHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 46888888776654 4788999999999999999998876655554
No 435
>PRK13057 putative lipid kinase; Reviewed
Probab=26.91 E-value=2e+02 Score=26.96 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHH----HcCC
Q 039701 296 QLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAV----SNGL 371 (476)
Q Consensus 296 ~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal----~~Gv 371 (476)
....+.+.+++.+..+......... ...+ ++-+ +....++ +|--||-||+.|++ ..++
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~~~---~a~~-----------~~~~--~~~~~d~--iiv~GGDGTv~~v~~~l~~~~~ 75 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAEDPD---DLSE-----------VIEA--YADGVDL--VIVGGGDGTLNAAAPALVETGL 75 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCHH---HHHH-----------HHHH--HHcCCCE--EEEECchHHHHHHHHHHhcCCC
Confidence 4556777788777776554443221 1111 1111 2334556 99999999999885 3578
Q ss_pred CEecccc
Q 039701 372 PMVTWPF 378 (476)
Q Consensus 372 P~l~~P~ 378 (476)
|+-++|.
T Consensus 76 ~lgiiP~ 82 (287)
T PRK13057 76 PLGILPL 82 (287)
T ss_pred cEEEECC
Confidence 9999997
No 436
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.71 E-value=92 Score=26.83 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCch--hHHHHhHcCCCcEEEe
Q 039701 107 LPLETLFKEIQPKPGCLISDVCLPW--TVSSACKFNVPRIVFH 147 (476)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~~--~~~~A~~~giP~v~~~ 147 (476)
..++.+++ .+||+||....... ....-++.|||++.+.
T Consensus 60 ~n~E~ll~---l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVA---LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhc---cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 34555555 59999998654322 4455678999998853
No 437
>PRK08939 primosomal protein DnaI; Reviewed
Probab=26.55 E-value=90 Score=29.81 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=38.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhhhH
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQNV 54 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~~~ 54 (476)
..+.|...++.|-..=+.++|.+|.++|..|+|+..+.....+...
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~ 202 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS 202 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH
Confidence 4688888899999999999999999999999999887554444433
No 438
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=26.46 E-value=4.9e+02 Score=23.55 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=25.5
Q ss_pred CCCeEEE-ecCCC-chhHHHHhHcCCCcEEEecch
Q 039701 118 PKPGCLI-SDVCL-PWTVSSACKFNVPRIVFHGFS 150 (476)
Q Consensus 118 ~~~D~vI-~D~~~-~~~~~~A~~~giP~v~~~~~~ 150 (476)
..||+|| .|+.- ..+..=|.++|||.|.++-+.
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn 188 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTN 188 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCC
Confidence 5799766 56643 578889999999999986554
No 439
>PRK03094 hypothetical protein; Provisional
Probab=26.32 E-value=62 Score=23.82 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 039701 25 MIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 25 ~l~La~~L~~rGH~Vt~~~~~ 45 (476)
+-.+.+.|+++||+|.=+.++
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457899999999999877654
No 440
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.31 E-value=1.8e+02 Score=23.08 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=31.0
Q ss_pred EEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchhhhh
Q 039701 13 LFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAARFQ 52 (476)
Q Consensus 13 ~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~~~~ 52 (476)
++.+...|+...++.+++.++++|..|..++........+
T Consensus 57 vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~ 96 (131)
T PF01380_consen 57 VIIISYSGETRELIELLRFAKERGAPVILITSNSESPLAR 96 (131)
T ss_dssp EEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHH
T ss_pred eEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhh
Confidence 3333477899999999999999999999998765555333
No 441
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.97 E-value=3.6e+02 Score=25.43 Aligned_cols=111 Identities=9% Similarity=-0.011 Sum_probs=0.0
Q ss_pred CCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeC--CcchhhhhhHhhhcccCCCceEEEEeeCCCcccC
Q 039701 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT--PMNAARFQNVIERGIQSGLRIQVIEFYFPCQEVG 78 (476)
Q Consensus 1 m~~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~--~~~~~~~~~~~~~~~~~g~~i~~~~i~~~~~~~~ 78 (476)
+....+ ++||+++.++..+.+.-++. +..--+-+++|.++.+ +......++. ++.+..++
T Consensus 83 l~~~~~-~~ri~vl~Sg~gsnl~al~~-~~~~~~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~~------- 144 (286)
T PRK06027 83 LLDSAE-RKRVVILVSKEDHCLGDLLW-RWRSGELPVEIAAVISNHDDLRSLVERF---------GIPFHHVP------- 144 (286)
T ss_pred Eccccc-CcEEEEEEcCCCCCHHHHHH-HHHcCCCCcEEEEEEEcChhHHHHHHHh---------CCCEEEec-------
Q ss_pred CCCCCCCCCCCCCcCcHHHHHHHHHHchHHHHHHHHhcCCCCeEEEecCCC-chhHHHHhHcCCCcEEEecc
Q 039701 79 LPEGCESWDKLPSMALLPKFFAAIEMLRLPLETLFKEIQPKPGCLISDVCL-PWTVSSACKFNVPRIVFHGF 149 (476)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D~vI~D~~~-~~~~~~A~~~giP~v~~~~~ 149 (476)
.-..........+.+.+++ .++|+||.-.+. .....+...+.-.++-++++
T Consensus 145 ------------------~~~~~~~~~~~~~~~~l~~--~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 145 ------------------VTKETKAEAEARLLELIDE--YQPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred ------------------cCccccchhHHHHHHHHHH--hCCCEEEEecchhhcCHHHHhhccCCceecCcc
No 442
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.97 E-value=5.3e+02 Score=23.81 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHHHH
Q 039701 419 KEDVKKAINMLMD--EGEERDERRRRAREYGETAKTA 453 (476)
Q Consensus 419 ~~~l~~~i~~ll~--~~~~~~~~r~~a~~l~~~~~~~ 453 (476)
...+.+.|.+.|. ||+.++.|++|++++.+++.+.
T Consensus 104 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l 140 (264)
T cd01020 104 MSKVANALADALVKADPDNKKYYQANAKKFVASLKPL 140 (264)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 3445555555553 5888899999999999987754
No 443
>CHL00067 rps2 ribosomal protein S2
Probab=25.94 E-value=5e+02 Score=23.55 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=25.9
Q ss_pred CCCeEEE-ecCCC-chhHHHHhHcCCCcEEEecchH
Q 039701 118 PKPGCLI-SDVCL-PWTVSSACKFNVPRIVFHGFSC 151 (476)
Q Consensus 118 ~~~D~vI-~D~~~-~~~~~~A~~~giP~v~~~~~~~ 151 (476)
..||+|| .|+.. ..+..=|.++|||.|.++-+.+
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 5799766 56544 4688899999999999866543
No 444
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.91 E-value=85 Score=29.92 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
++||.|+-.+.+|. .+|+.|.++||+|++....
T Consensus 4 ~m~I~iiG~G~~G~-----~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGS-----TLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 56899998888884 7899999999999988754
No 445
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=25.82 E-value=1.3e+02 Score=27.25 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=29.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCe-EEEEe
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGAL-VTIVT 43 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~-Vt~~~ 43 (476)
=|+|.-.|..|--.....|.++|+++||. +..+.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii 37 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRII 37 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEe
Confidence 48899999999999999999999999986 44443
No 446
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.62 E-value=1.1e+02 Score=24.70 Aligned_cols=38 Identities=11% Similarity=0.241 Sum_probs=27.5
Q ss_pred ceEEEecCCcccCCHHHHHHHHHHHHh--CCCCeEEEEcC
Q 039701 280 SAVYVCLGSLCDCSTRQLIELGLGLEA--TKKPFIWVIRP 317 (476)
Q Consensus 280 ~vv~vs~GS~~~~~~~~~~~i~~a~~~--~~~~~i~~~~~ 317 (476)
.++++++||......+.+..+.+.+++ .+..|-|.+.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 489999999887455667778887753 45677777654
No 447
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=25.62 E-value=66 Score=29.16 Aligned_cols=18 Identities=33% Similarity=0.290 Sum_probs=15.7
Q ss_pred HHHHHHHHHCCCeEEEEe
Q 039701 26 IDIARLLAQHGALVTIVT 43 (476)
Q Consensus 26 l~La~~L~~rGH~Vt~~~ 43 (476)
.++|++|+++|++|+++.
T Consensus 29 ~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 378999999999999875
No 448
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=25.39 E-value=1e+02 Score=22.18 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCCc
Q 039701 25 MIDIARLLAQHGALVTIVTTPM 46 (476)
Q Consensus 25 ~l~La~~L~~rGH~Vt~~~~~~ 46 (476)
-+.+|..|+++|.+||++...+
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHhCcEEEEEeccc
Confidence 4789999999999999997643
No 449
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=25.22 E-value=11 Score=20.52 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=13.8
Q ss_pred ChhhHHHHHHcCCCEecc
Q 039701 359 GWNSVLEAVSNGLPMVTW 376 (476)
Q Consensus 359 G~~s~~eal~~GvP~l~~ 376 (476)
|.|++.-.|+.|.|.++-
T Consensus 1 gIGa~Lkvla~~LP~lIS 18 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLIS 18 (26)
T ss_dssp -HHHHHHHHHTHHHHHHH
T ss_pred ChhHHHHHHHhcChHHHH
Confidence 678888889988887763
No 450
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.21 E-value=1.8e+02 Score=30.43 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=24.3
Q ss_pred hCCCceeeecccChh------hHHHHHHcCCCEecccc
Q 039701 347 SHPAIGGFLTHCGWN------SVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 347 ~~~~~~~~I~HgG~~------s~~eal~~GvP~l~~P~ 378 (476)
.++.+ ++.|+|-| .++.|...++|||++--
T Consensus 63 GkpgV--~~~tsGPGatN~~tgla~A~~d~~Pll~itG 98 (550)
T COG0028 63 GKPGV--CLVTSGPGATNLLTGLADAYMDSVPLLAITG 98 (550)
T ss_pred CCCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34555 99999964 67799999999999865
No 451
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=25.17 E-value=1.8e+02 Score=31.68 Aligned_cols=47 Identities=19% Similarity=0.156 Sum_probs=38.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeC-CcchhhhhhH
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT-PMNAARFQNV 54 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~-~~~~~~~~~~ 54 (476)
++||-|=..|+-|-.+-++.=|++|.+.|.+|.+-.- +.....-.+.
T Consensus 22 klkIf~G~apGVGKTyaML~~a~~~~~~G~DvviG~vEtHgR~ET~al 69 (890)
T COG2205 22 KLKIFLGAAPGVGKTYAMLSEAQRLLAEGVDVVIGVVETHGRRETAAL 69 (890)
T ss_pred ceEEEeecCCCccHHHHHHHHHHHHHHcCCcEEEEEecCCCchHHHHH
Confidence 7999999999999999999999999999999988643 4444444444
No 452
>PRK08611 pyruvate oxidase; Provisional
Probab=25.13 E-value=4e+02 Score=28.05 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.4
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEecccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
.+++++|.|- +++++|...++|+|++--
T Consensus 69 ~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG 102 (576)
T PRK08611 69 IGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAG 102 (576)
T ss_pred ceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEec
Confidence 3448998885 478899999999999943
No 453
>PRK13055 putative lipid kinase; Reviewed
Probab=25.05 E-value=3.5e+02 Score=26.12 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCCCeEEE-EcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHc---
Q 039701 294 TRQLIELGLGLEATKKPFIWV-IRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSN--- 369 (476)
Q Consensus 294 ~~~~~~i~~a~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~--- 369 (476)
.+....+...+++.+..+.+. ..........+.. .......++ +|--||-||+.|++..
T Consensus 19 ~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~---------------~~~~~~~d~--vvv~GGDGTl~evvngl~~ 81 (334)
T PRK13055 19 KKNVADILDILEQAGYETSAFQTTPEPNSAKNEAK---------------RAAEAGFDL--IIAAGGDGTINEVVNGIAP 81 (334)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHH---------------HHhhcCCCE--EEEECCCCHHHHHHHHHhh
Confidence 345566777888777765432 3222110111111 111223345 9999999999998742
Q ss_pred ---CCCEecccc
Q 039701 370 ---GLPMVTWPF 378 (476)
Q Consensus 370 ---GvP~l~~P~ 378 (476)
.+|+-++|.
T Consensus 82 ~~~~~~LgiiP~ 93 (334)
T PRK13055 82 LEKRPKMAIIPA 93 (334)
T ss_pred cCCCCcEEEECC
Confidence 578899997
No 454
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=24.89 E-value=93 Score=30.30 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.0
Q ss_pred CccChHHHHHHHHHHHH-CCCeEEEEeCC
Q 039701 18 AQGHMIPMIDIARLLAQ-HGALVTIVTTP 45 (476)
Q Consensus 18 ~~GHv~P~l~La~~L~~-rGH~Vt~~~~~ 45 (476)
=+|++--+.+||+.|++ +||+|.+.+..
T Consensus 10 NyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 10 NYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred CCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 47999999999999996 69999998864
No 455
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=24.64 E-value=3.8e+02 Score=28.16 Aligned_cols=80 Identities=13% Similarity=0.052 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCCeEEEEcCCCCC--chhHHHHhcCCC---eE---eec-----cccHHHhhhCCCceeeecccCh----
Q 039701 298 IELGLGLEATKKPFIWVIRPGDQA--FEKFEERIEGRG---LL---IRG-----WAPQVVILSHPAIGGFLTHCGW---- 360 (476)
Q Consensus 298 ~~i~~a~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~n---v~---~~~-----~vpq~~ll~~~~~~~~I~HgG~---- 360 (476)
+.|++.|++.+.+.++-+.+.... .+.+.+ .+..+ +. .++ +.-...-...-..+++++|.|-
T Consensus 11 ~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~-~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N 89 (569)
T PRK08327 11 ELFLELLKELGVDYIFINSGTDYPPIIEAKAR-ARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDVGTAN 89 (569)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHh-hhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHH
Confidence 457777777888888777665421 111111 00101 11 111 1111111112234448888884
Q ss_pred --hhHHHHHHcCCCEecccc
Q 039701 361 --NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 361 --~s~~eal~~GvP~l~~P~ 378 (476)
+++++|...++|+|++.-
T Consensus 90 ~~~gla~A~~d~~Pvl~I~G 109 (569)
T PRK08327 90 ALGGVHNAARSRIPVLVFAG 109 (569)
T ss_pred HHHHHHHHhhcCCCEEEEec
Confidence 478899999999998854
No 456
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=24.62 E-value=1.1e+02 Score=30.80 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEE
Q 039701 108 PLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVF 146 (476)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~ 146 (476)
++.+.+++ .++|++|.... ...+|+++|||++.+
T Consensus 364 ~l~~~i~~--~~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 364 DLEDLACA--AGADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred HHHHHHhh--cCCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 55666666 78999998864 467999999999874
No 457
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.47 E-value=2e+02 Score=31.37 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=31.3
Q ss_pred CcEEEEEcCC--CccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 8 QLHFILFPFL--AQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 8 ~~~vl~~~~p--~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
+.|++.++.+ +-|-..-..+||..|++.|++|.++=..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D 584 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDAD 584 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4566666655 7899999999999999999999998544
No 458
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=24.46 E-value=3.1e+02 Score=26.01 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=22.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
+.++++ ++.|-+- ..+++.|+++|++|+++.-
T Consensus 7 k~vlVT-Gas~gIG--~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 7 GTVIIT-GASSGVG--LYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CEEEEE-cCCChHH--HHHHHHHHHCCCEEEEEEC
Confidence 556666 3334333 5678999999999988864
No 459
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=24.38 E-value=5e+02 Score=22.98 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=30.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCc
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~ 46 (476)
.+++.+..-|-..-++.-++....+|-.|.++.+..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i 42 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI 42 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 345555688999999999999999999999999763
No 460
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=24.31 E-value=5.1e+02 Score=23.04 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEE
Q 039701 108 PLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIV 145 (476)
Q Consensus 108 ~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~ 145 (476)
+.++.++ .+.+.+|+-.+.......|++.|+|++.
T Consensus 72 ~a~~a~~---aGA~FivsP~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 72 QLRQAVD---AGAQFIVSPGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHH---cCCCEEECCCCCHHHHHHHHHcCCcEEC
Confidence 3444554 4888888887777788888888888875
No 461
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=24.04 E-value=1.4e+02 Score=25.99 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHhc
Q 039701 434 EERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQA 475 (476)
Q Consensus 434 ~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~~ 475 (476)
.+|+.|++.|+++++.++ |-..+++++.++.++++.
T Consensus 29 ~~G~Ky~~~A~elA~~~k------GKkIRs~~dAl~s~eK~~ 64 (187)
T PF01024_consen 29 KYGEKYKKLAKELAEDAK------GKKIRSVDDALKSFEKYK 64 (187)
T ss_dssp HH-HHHHHHHHHHHHHHH------TGC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc------ccccCCHHHHHHHHHHHH
Confidence 456677777777777766 777789999999888753
No 462
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=23.92 E-value=1.1e+02 Score=23.68 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=27.4
Q ss_pred hHHHHHHHHhcCCCCeEEEecCCC---chhHHHHhHcCCCcE
Q 039701 106 RLPLETLFKEIQPKPGCLISDVCL---PWTVSSACKFNVPRI 144 (476)
Q Consensus 106 ~~~l~~~l~~~~~~~D~vI~D~~~---~~~~~~A~~~giP~v 144 (476)
...+.++.++ .++|+||..+-. ....+..++.|||+.
T Consensus 51 ~~~l~~~a~~--~~idlvvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 51 PEELADFAKE--NKIDLVVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp HHHHHHHHHH--TTESEEEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred HHHHHHHHHH--cCCCEEEECChHHHHHHHHHHHHHCCCcEE
Confidence 3456677777 899999998833 355788888899986
No 463
>PLN02293 adenine phosphoribosyltransferase
Probab=23.88 E-value=2e+02 Score=25.15 Aligned_cols=42 Identities=2% Similarity=-0.120 Sum_probs=29.4
Q ss_pred HHchHHHHHHHHhcCCCCeEEEecC-C-CchhHHHHhHcCCCcEEE
Q 039701 103 EMLRLPLETLFKEIQPKPGCLISDV-C-LPWTVSSACKFNVPRIVF 146 (476)
Q Consensus 103 ~~~~~~l~~~l~~~~~~~D~vI~D~-~-~~~~~~~A~~~giP~v~~ 146 (476)
......+.+.+++ .++|+|++=. - .+.+..+|..+|+|++.+
T Consensus 48 ~~~~~~l~~~~~~--~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 48 KDTIDLFVERYRD--MGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHHHhh--cCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 3444555555555 6899988543 2 357899999999998863
No 464
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.84 E-value=1.5e+02 Score=28.22 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=37.5
Q ss_pred hCCCceeeecccChhhHHHHHH----cCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHH
Q 039701 347 SHPAIGGFLTHCGWNSVLEAVS----NGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDV 422 (476)
Q Consensus 347 ~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l 422 (476)
..+++ +|+=||-||+.+++. .++|++.+... + +| .+ . ..+.+++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G------------~--lG-Fl--~-------------~~~~~~~ 108 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG------------R--LG-FL--T-------------DIRPDEL 108 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC------------c--cc-cc--c-------------cCCHHHH
Confidence 34667 999999999999975 36677776652 1 12 11 1 3667888
Q ss_pred HHHHHHHhcC
Q 039701 423 KKAINMLMDE 432 (476)
Q Consensus 423 ~~~i~~ll~~ 432 (476)
.++|.++++.
T Consensus 109 ~~~l~~~~~g 118 (295)
T PRK01231 109 EFKLAEVLDG 118 (295)
T ss_pred HHHHHHHHcC
Confidence 8888888863
No 465
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=23.79 E-value=2e+02 Score=26.61 Aligned_cols=58 Identities=14% Similarity=0.136 Sum_probs=43.5
Q ss_pred cchhHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHh
Q 039701 417 VKKEDVKKAINMLMD--EGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 474 (476)
Q Consensus 417 ~t~~~l~~~i~~ll~--~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~ 474 (476)
.+-+.+..+|.++|+ |-+.++..+.+-+++.+.+.....+-||+...+..|...|..+
T Consensus 82 e~le~~~p~VkRILsLrNAs~kEi~K~rK~eIIkkfqr~~~DTGS~EVQIAiLTeRI~~L 141 (302)
T PTZ00119 82 DDIKHLRKNIINMLHLNCANSKQIHKYKKLCIRRCLQRRPFDTGSAPVQIGCLTEKILNL 141 (302)
T ss_pred cchhhhCHHHHHHhccccCChHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 455667788888853 5555666777777788888876677799999998888888754
No 466
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=23.79 E-value=2.2e+02 Score=24.10 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=34.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 039701 11 FILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (476)
Q Consensus 11 vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~ 49 (476)
+++.-.|+-|-..-...++..|+++|.+|.++.......
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 577888899999999999999999999999998765543
No 467
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=23.73 E-value=4.1e+02 Score=26.80 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 8 QLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 8 ~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
.+|||++-.+++.| +|++.|++.|++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 46899998888777 578888888987777744
No 468
>PRK12827 short chain dehydrogenase; Provisional
Probab=23.72 E-value=2.6e+02 Score=24.98 Aligned_cols=37 Identities=30% Similarity=0.253 Sum_probs=24.3
Q ss_pred CCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEe
Q 039701 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (476)
Q Consensus 1 m~~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~ 43 (476)
|.+++. ++|++. ++.|.+- ..||+.|+++||+|+++.
T Consensus 1 ~~~~~~--~~ilIt--Gasg~iG--~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 1 MASLDS--RRVLIT--GGSGGLG--RAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCCcCC--CEEEEE--CCCChHH--HHHHHHHHHCCCeEEEEc
Confidence 444433 344443 4455553 588999999999998865
No 469
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=23.63 E-value=1.4e+02 Score=28.37 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=24.4
Q ss_pred CCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEe
Q 039701 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (476)
Q Consensus 1 m~~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~ 43 (476)
|+++++ +|+ ++ |+.|-+ =..|++.|.++||+|+++.
T Consensus 1 ~~~~~k---~vl-Vt-G~~G~I--G~~l~~~L~~~G~~V~~~~ 36 (325)
T PLN02989 1 MADGGK---VVC-VT-GASGYI--ASWIVKLLLFRGYTINATV 36 (325)
T ss_pred CCCCCC---EEE-EE-CCchHH--HHHHHHHHHHCCCEEEEEE
Confidence 777544 444 44 455544 3578899999999998764
No 470
>PRK12361 hypothetical protein; Provisional
Probab=23.56 E-value=3.3e+02 Score=28.42 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=22.0
Q ss_pred eecccChhhHHHHH----HcCCCEeccccc
Q 039701 354 FLTHCGWNSVLEAV----SNGLPMVTWPFF 379 (476)
Q Consensus 354 ~I~HgG~~s~~eal----~~GvP~l~~P~~ 379 (476)
+|--||-||+.|++ ..++|+-++|..
T Consensus 301 Viv~GGDGTl~ev~~~l~~~~~~lgiiP~G 330 (547)
T PRK12361 301 VIACGGDGTVTEVASELVNTDITLGIIPLG 330 (547)
T ss_pred EEEECCCcHHHHHHHHHhcCCCCEEEecCC
Confidence 99999999999886 347889999973
No 471
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=23.49 E-value=80 Score=29.55 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=16.6
Q ss_pred HHHHHHHHCCCeEEEEeCC
Q 039701 27 DIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 27 ~La~~L~~rGH~Vt~~~~~ 45 (476)
-+|..|.+.||+|+++...
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788999999999999865
No 472
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.40 E-value=1.6e+02 Score=21.51 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=27.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEe
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~ 43 (476)
.+|++++. ...+..-.+.++..|++.|.+|.+-.
T Consensus 2 ~~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~ 35 (91)
T cd00860 2 VQVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDL 35 (91)
T ss_pred eEEEEEee-CchHHHHHHHHHHHHHHCCCEEEEEC
Confidence 45676664 46778889999999999999998853
No 473
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.37 E-value=66 Score=30.38 Aligned_cols=32 Identities=3% Similarity=0.055 Sum_probs=23.9
Q ss_pred hhhCCCceeeecccChhhHHHHHHc----CCCEecccc
Q 039701 345 ILSHPAIGGFLTHCGWNSVLEAVSN----GLPMVTWPF 378 (476)
Q Consensus 345 ll~~~~~~~~I~HgG~~s~~eal~~----GvP~l~~P~ 378 (476)
+...+++ +|+-||-||+..++.. ++|++.+-.
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~ 96 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA 96 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 3345677 9999999999988663 678776654
No 474
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.35 E-value=5.1e+02 Score=26.12 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=34.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHH-HHCCCeEEEEeCCcchhh
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLL-AQHGALVTIVTTPMNAAR 50 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L-~~rGH~Vt~~~~~~~~~~ 50 (476)
.-++|+-.++-|-..=+..||..+ ..+|+.|.+++...+...
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~a 266 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIA 266 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhh
Confidence 347777778999999999999876 678999999998765543
No 475
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=23.29 E-value=1.2e+02 Score=28.71 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=26.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 10 HFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 10 ~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
||.|+-.+.+| .+.|+.|.++||+|++..-.
T Consensus 2 kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 2 KIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred eEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 68888888888 47899999999999998754
No 476
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=23.29 E-value=1.2e+02 Score=24.10 Aligned_cols=33 Identities=9% Similarity=0.223 Sum_probs=27.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEe
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~ 43 (476)
.+|++++++.. +...+..++.|.+.|.+++++.
T Consensus 10 ~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~ 42 (124)
T PF02780_consen 10 ADITIIAYGSM--VEEALEAAEELEEEGIKAGVID 42 (124)
T ss_dssp SSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEe
Confidence 47888888877 5677899999999999988865
No 477
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=23.18 E-value=2.1e+02 Score=19.40 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=30.6
Q ss_pred ccchhHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHHHHH
Q 039701 416 PVKKEDVKKAINMLMD--EGEERDERRRRAREYGETAKTAI 454 (476)
Q Consensus 416 ~~t~~~l~~~i~~ll~--~~~~~~~~r~~a~~l~~~~~~~~ 454 (476)
.++..++.+.+.+.+. ++++++.|.+.|++..++..+++
T Consensus 25 ~~~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 25 DASVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 3678888888888764 35678899999999888877653
No 478
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=23.13 E-value=1.1e+02 Score=22.35 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=21.0
Q ss_pred CCCeEEEecC--CCchhHHHHhHcCCCcEE
Q 039701 118 PKPGCLISDV--CLPWTVSSACKFNVPRIV 145 (476)
Q Consensus 118 ~~~D~vI~D~--~~~~~~~~A~~~giP~v~ 145 (476)
.+.-.||.+. ...-+..+|+.+|||++.
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~iv 58 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIV 58 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEE
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEE
Confidence 4666777666 345688999999999997
No 479
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=23.12 E-value=3.7e+02 Score=26.85 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=24.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCc
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPM 46 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~ 46 (476)
+||+++-.+..+ ..|++.+++-|+.+++++.+.
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~~~~~~~~~~~~~ 33 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQSPLVKYVYVAPG 33 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHhCCCccEEEEECC
Confidence 478888777664 468888888888877776553
No 480
>PRK13236 nitrogenase reductase; Reviewed
Probab=22.89 E-value=1.6e+02 Score=27.79 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=28.0
Q ss_pred EEE-EEcCCCccChHHHHHHHHHHHHCCCeEEEEe
Q 039701 10 HFI-LFPFLAQGHMIPMIDIARLLAQHGALVTIVT 43 (476)
Q Consensus 10 ~vl-~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~ 43 (476)
||+ |..=|+-|-..-.++||..|+++|++|.++=
T Consensus 7 ~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD 41 (296)
T PRK13236 7 RQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVG 41 (296)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 444 4444588999999999999999999999983
No 481
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.79 E-value=64 Score=30.78 Aligned_cols=67 Identities=12% Similarity=0.002 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHc----C
Q 039701 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSN----G 370 (476)
Q Consensus 295 ~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~----G 370 (476)
+.+..+.+.+++.+..+.+....... . +.. .+ . ...-..+++ +|.-||-||+.+++.. +
T Consensus 19 ~~~~~i~~~L~~~g~~v~v~~~~~~~----~-----~~~----~~-~-~~~~~~~d~--vi~~GGDGT~l~~~~~~~~~~ 81 (305)
T PRK02645 19 EAAERCAKQLEARGCKVLMGPSGPKD----N-----PYP----VF-L-ASASELIDL--AIVLGGDGTVLAAARHLAPHD 81 (305)
T ss_pred HHHHHHHHHHHHCCCEEEEecCchhh----c-----ccc----ch-h-hccccCcCE--EEEECCcHHHHHHHHHhccCC
Confidence 44556777777778776554321110 0 000 01 1 122234566 9999999999999764 7
Q ss_pred CCEecccc
Q 039701 371 LPMVTWPF 378 (476)
Q Consensus 371 vP~l~~P~ 378 (476)
+|++.+..
T Consensus 82 ~pv~gin~ 89 (305)
T PRK02645 82 IPILSVNV 89 (305)
T ss_pred CCEEEEec
Confidence 88888776
No 482
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=22.72 E-value=5.4e+02 Score=25.54 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=28.3
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCC-CeEEEEeCC-cchhhhh
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHG-ALVTIVTTP-MNAARFQ 52 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rG-H~Vt~~~~~-~~~~~~~ 52 (476)
++|+++-.|.-|+ ..|+-|+++| ++|+++.-. +..+++.
T Consensus 2 ~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~ 42 (389)
T COG1748 2 MKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIA 42 (389)
T ss_pred CcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 3688887776665 4789999999 999999764 3444343
No 483
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.70 E-value=6.3e+02 Score=23.53 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=28.1
Q ss_pred cCCCEecccccccc-----hhhHHHHHHhhcc-eEEeccCCCCCCcccccCCcccchhHHHHHHHHHh
Q 039701 369 NGLPMVTWPFFADQ-----FCNEKLVVQVLRI-GVTIGAERPPSLADEERNGVPVKKEDVKKAINMLM 430 (476)
Q Consensus 369 ~GvP~l~~P~~~DQ-----~~~a~~v~e~~g~-G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll 430 (476)
.++|+++-|-+.-. +..+.... .+|+ |+.+.....++-+. ++..-.++++++++.++++.
T Consensus 195 ~~~pV~~D~sHs~G~~~~v~~~~~aAv-a~Ga~Gl~iE~H~~pd~a~-~D~~~sl~p~~l~~l~~~i~ 260 (266)
T PRK13398 195 SHLPIIVDPSHATGRRELVIPMAKAAI-AAGADGLMIEVHPEPEKAL-SDARQTLNFEEMKELVDELK 260 (266)
T ss_pred cCCCEEEeCCCcccchhhHHHHHHHHH-HcCCCEEEEeccCCccccC-CchhhcCCHHHHHHHHHHHH
Confidence 47786664554322 33344443 5565 34443322111221 22234566777777666553
No 484
>PRK05876 short chain dehydrogenase; Provisional
Probab=22.70 E-value=1.5e+02 Score=27.52 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=26.2
Q ss_pred CCCCCCCCcEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeC
Q 039701 1 MASQAGSQLHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTT 44 (476)
Q Consensus 1 m~~~~~~~~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~ 44 (476)
|.++.+ |.++++ ++.|.+- ..+|+.|+++|++|+++.-
T Consensus 1 ~~~~~~---k~vlVT-Gas~gIG--~ala~~La~~G~~Vv~~~r 38 (275)
T PRK05876 1 MDGFPG---RGAVIT-GGASGIG--LATGTEFARRGARVVLGDV 38 (275)
T ss_pred CCCcCC---CEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeC
Confidence 566544 566666 4445553 5789999999999987653
No 485
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=22.61 E-value=5.4e+02 Score=22.72 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCeEEEecCCCchhHHHHhHcCCCcEEEecch
Q 039701 107 LPLETLFKEIQPKPGCLISDVCLPWTVSSACKFNVPRIVFHGFS 150 (476)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~~~~~~~~A~~~giP~v~~~~~~ 150 (476)
++.++.++. +.+.+|+-.+.......|++.++|++.=+.++
T Consensus 71 e~a~~a~~a---GA~FivSP~~~~~v~~~~~~~~i~~iPG~~Tp 111 (196)
T PF01081_consen 71 EQAEAAIAA---GAQFIVSPGFDPEVIEYAREYGIPYIPGVMTP 111 (196)
T ss_dssp HHHHHHHHH---T-SEEEESS--HHHHHHHHHHTSEEEEEESSH
T ss_pred HHHHHHHHc---CCCEEECCCCCHHHHHHHHHcCCcccCCcCCH
Confidence 345555554 88889888888888889999999988743333
No 486
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=22.60 E-value=1.2e+02 Score=22.70 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=32.5
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHh
Q 039701 418 KKEDVKKAINMLMDEGEERDERRRRAREYGETAKTAIEEGGSSYLNIKLLIKDILQQ 474 (476)
Q Consensus 418 t~~~l~~~i~~ll~~~~~~~~~r~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~i~~~ 474 (476)
..+.|...++.-|... ..++.++++....-+. +|.....++++++.|.-.
T Consensus 15 e~~~L~~~L~~rL~e~----GW~d~vr~~~re~i~~---~g~~~~~~~~l~~~i~P~ 64 (86)
T PF10163_consen 15 EYERLKELLRQRLIEC----GWRDEVRQLCREIIRE---RGIDNLTFEDLLEEITPK 64 (86)
T ss_dssp HHHHHHHHHHHHHHHT----THHHHHHHHHHHHHHH---H-TTTSBHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHC----ChHHHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHH
Confidence 4567778887777656 5666666665554433 666667788888877643
No 487
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.60 E-value=76 Score=30.04 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=25.0
Q ss_pred HhhhCCCceeeecccChhhHHHHHH----cCCCEecccc
Q 039701 344 VILSHPAIGGFLTHCGWNSVLEAVS----NGLPMVTWPF 378 (476)
Q Consensus 344 ~ll~~~~~~~~I~HgG~~s~~eal~----~GvP~l~~P~ 378 (476)
.+...+++ +|+=||-||+..++. .++|++.+-.
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~ 96 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINT 96 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec
Confidence 33345677 999999999999877 3778777654
No 488
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=22.59 E-value=4.5e+02 Score=23.70 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=28.5
Q ss_pred chHHHHHHHHhcCCCCeEEEecC--CCchhHHHHhHcCCCcEE
Q 039701 105 LRLPLETLFKEIQPKPGCLISDV--CLPWTVSSACKFNVPRIV 145 (476)
Q Consensus 105 ~~~~l~~~l~~~~~~~D~vI~D~--~~~~~~~~A~~~giP~v~ 145 (476)
.....++.+++ .+.|+|+..- +...+-.+...+|||++=
T Consensus 162 l~~~~~~a~~e--dgAeaIiLGCAGms~la~~Lq~~~gvPVID 202 (230)
T COG4126 162 LVIEAAEALKE--DGAEAIILGCAGMSDLADQLQKAFGVPVID 202 (230)
T ss_pred HHHHHHHHhhh--cCCCEEEEcCccHHHHHHHHHHHhCCCccc
Confidence 34455666777 8999998555 444567889999999984
No 489
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.49 E-value=1.1e+02 Score=24.65 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=27.6
Q ss_pred EEEEEcCC-CccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 10 HFILFPFL-AQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 10 ~vl~~~~p-~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
=++++-.| ..-.+.-.+=+...|.++|.+||++.++
T Consensus 5 vlv~lGCPeiP~qissaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 5 VLVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred EEEEecCCCCCccchHHHHHHHHhhccCccEEEecCH
Confidence 34555555 5556666777889999999999999988
No 490
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=22.43 E-value=2.6e+02 Score=21.39 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=27.2
Q ss_pred ccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHhc
Q 039701 380 ADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLMD 431 (476)
Q Consensus 380 ~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll~ 431 (476)
.|+..|.... |..|.+.+ . +.++.++.+.+-++++
T Consensus 20 ~~~~gWr~LA-e~lg~~~~---f-------------r~S~~el~~cslkvl~ 54 (97)
T cd08783 20 ADGKGWRKLA-ELAGSRGR---F-------------RLSCLDLEQCSLKVLE 54 (97)
T ss_pred CccCCHHHHH-HHHccCCc---c-------------ccCHHHHHHHHHHHhc
Confidence 3556788777 68887763 3 4899999999999997
No 491
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.35 E-value=57 Score=30.61 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=22.8
Q ss_pred CCCceeeecccChhhHHHHHH---cCCCEecccc
Q 039701 348 HPAIGGFLTHCGWNSVLEAVS---NGLPMVTWPF 378 (476)
Q Consensus 348 ~~~~~~~I~HgG~~s~~eal~---~GvP~l~~P~ 378 (476)
.+++ +|.-||-||+.+++. .++|++.++.
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 4566 999999999999984 3567777775
No 492
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.30 E-value=5.8e+02 Score=23.01 Aligned_cols=48 Identities=23% Similarity=0.298 Sum_probs=31.9
Q ss_pred cCHHHHHHHHhccC-CceEEeCcccCCCCCcccccccCCCCCCCcccccccccCCCCCceEEEecCCccc
Q 039701 223 LEPAYVEEYKNARD-GKVWCVGPVSLCNKEDMDKLERGDKTSNDGSGCLKWLDSWQPGSAVYVCLGSLCD 291 (476)
Q Consensus 223 l~~~~~~~~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~ 291 (476)
+-+.|+..+...+| -++.++|.+... .+++.+||+.+ ++.++.||...
T Consensus 144 ~G~~~ikal~~p~p~i~~~ptGGV~~~-----------------~~n~~~yl~aG----a~avg~Gs~L~ 192 (222)
T PRK07114 144 YGPGFVKAIKGPMPWTKIMPTGGVEPT-----------------EENLKKWFGAG----VTCVGMGSKLI 192 (222)
T ss_pred cCHHHHHHHhccCCCCeEEeCCCCCcc-----------------hhcHHHHHhCC----CEEEEEChhhc
Confidence 44777777777664 345567777321 15788999854 58889888753
No 493
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.20 E-value=1.6e+02 Score=30.83 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=28.2
Q ss_pred cEEEEEcCC-------CccChHHHH---HHHHHHHHCCCeEEEEeCCcc
Q 039701 9 LHFILFPFL-------AQGHMIPMI---DIARLLAQHGALVTIVTTPMN 47 (476)
Q Consensus 9 ~~vl~~~~p-------~~GHv~P~l---~La~~L~~rGH~Vt~~~~~~~ 47 (476)
.++++.+.. =.||+.+.+ .+|+-++.+||+|.|+|..+.
T Consensus 5 ~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDe 53 (558)
T COG0143 5 KKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDE 53 (558)
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 356665543 239999777 577777888999999987553
No 494
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=22.07 E-value=8.2e+02 Score=24.63 Aligned_cols=80 Identities=10% Similarity=0.072 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEeeccccHHHhhhCCCceeeecccChhhHHHHHHcCCCE
Q 039701 294 TRQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIRGWAPQVVILSHPAIGGFLTHCGWNSVLEAVSNGLPM 373 (476)
Q Consensus 294 ~~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~~~vpq~~ll~~~~~~~~I~HgG~~s~~eal~~GvP~ 373 (476)
+.....+.+.+.+++..++........ .......++.+.+.++..-.+++.+.....+|.|. ..-.=|...|+|.
T Consensus 320 ~~~~~~l~~~l~elGm~v~~~~~~~~~---~~~~~~~~~~~~~~D~~~l~~~i~~~~~dliig~s--~~k~~A~~l~ip~ 394 (432)
T TIGR01285 320 PDLLAAWATFFTSMGAQIVAAVTTTGS---PLLQKLPVETVVIGDLEDLEDLACAAGADLLITNS--HGRALAQRLALPL 394 (432)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEeCCCC---HHHHhCCcCcEEeCCHHHHHHHHhhcCCCEEEECc--chHHHHHHcCCCE
Confidence 345566777788888888776655432 12233445566665565555666444443377554 3345566679998
Q ss_pred ecccc
Q 039701 374 VTWPF 378 (476)
Q Consensus 374 l~~P~ 378 (476)
+-+-+
T Consensus 395 ir~g~ 399 (432)
T TIGR01285 395 VRAGF 399 (432)
T ss_pred EEecC
Confidence 74444
No 495
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.03 E-value=1.5e+02 Score=25.02 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=24.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCC
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTP 45 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~ 45 (476)
.+|+++--+.-| ...++.|.+.||+|+++.+.
T Consensus 14 ~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc
Confidence 478887655433 78899999999999999643
No 496
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=21.99 E-value=97 Score=24.41 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCCeEEEEcCCCCCchhHHHHhcCCCeEee-------ccccHHHhh---hCCCceeeecccChhhHH
Q 039701 295 RQLIELGLGLEATKKPFIWVIRPGDQAFEKFEERIEGRGLLIR-------GWAPQVVIL---SHPAIGGFLTHCGWNSVL 364 (476)
Q Consensus 295 ~~~~~i~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~nv~~~-------~~vpq~~ll---~~~~~~~~I~HgG~~s~~ 364 (476)
+...++++++++.+++.+....+.+.. ... ... .+.++.. .|+....++ ....+ ...|+|+|-..
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d~~-s~~-~~~-ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~pGyg~ls 86 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPDTV-STH-VDM-ADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIHPGYGFLS 86 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGTT-GHH-HHH-SSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEESTSSTTT
T ss_pred HHHHHHHHHHHHhCCcceeccCchhcc-ccc-ccc-cccceecCcchhhhhhccHHHHhhHhhhhcC--cccccccchhH
Confidence 446679999999999999988776532 111 111 3333333 366655443 34455 88899987666
Q ss_pred HH
Q 039701 365 EA 366 (476)
Q Consensus 365 ea 366 (476)
|.
T Consensus 87 e~ 88 (110)
T PF00289_consen 87 EN 88 (110)
T ss_dssp TH
T ss_pred HH
Confidence 54
No 497
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=21.91 E-value=1.8e+02 Score=25.52 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCeEEEecCC--CchhHHHHhHcCCCcEEE
Q 039701 107 LPLETLFKEIQPKPGCLISDVC--LPWTVSSACKFNVPRIVF 146 (476)
Q Consensus 107 ~~l~~~l~~~~~~~D~vI~D~~--~~~~~~~A~~~giP~v~~ 146 (476)
..+.+.+++ .++|+|++=.. .+.+..+|..+|+|++..
T Consensus 40 ~~l~~~~~~--~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~v 79 (191)
T TIGR01744 40 EEFARRFAD--DGITKIVTIEASGIAPAIMTGLKLGVPVVFA 79 (191)
T ss_pred HHHHHHhcc--CCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 334444444 68999985432 357888999999999984
No 498
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=21.83 E-value=1.7e+02 Score=24.39 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=47.1
Q ss_pred ChhhHHHHHHcCCCEecccccccchhhHHHHHHhhcceEEeccCCCCCCcccccCCcccchhHHHHHHHHHh
Q 039701 359 GWNSVLEAVSNGLPMVTWPFFADQFCNEKLVVQVLRIGVTIGAERPPSLADEERNGVPVKKEDVKKAINMLM 430 (476)
Q Consensus 359 G~~s~~eal~~GvP~l~~P~~~DQ~~~a~~v~e~~g~G~~l~~~~~~~~~~~~~~~~~~t~~~l~~~i~~ll 430 (476)
+==||.|-+-.--|+|+=....-++++...+ ..|+-....+. .++.++|..++..+-
T Consensus 36 ~RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl--~~gl~~A~~KR-------------pVs~e~ie~~v~~ie 92 (156)
T COG1327 36 ERFTTFERAELRPLIVVKKDGRREPFDREKL--RRGLIRACEKR-------------PVSSEQIEEAVSHIE 92 (156)
T ss_pred cccchhheeeeccceEECcCCCcCCCCHHHH--HHHHHHHHhcC-------------CCCHHHHHHHHHHHH
Confidence 3458888888888889988889999999998 56888777777 699999999988874
No 499
>PRK12377 putative replication protein; Provisional
Probab=21.83 E-value=1.4e+02 Score=27.50 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=33.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHHCCCeEEEEeCCcchh
Q 039701 9 LHFILFPFLAQGHMIPMIDIARLLAQHGALVTIVTTPMNAA 49 (476)
Q Consensus 9 ~~vl~~~~p~~GHv~P~l~La~~L~~rGH~Vt~~~~~~~~~ 49 (476)
..++|.-.++.|-..=..++|..|.++|+.|.|++.+....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 35788888899999889999999999999998887764433
No 500
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=21.79 E-value=2.9e+02 Score=29.06 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=21.7
Q ss_pred ceeeecccCh------hhHHHHHHcCCCEecccc
Q 039701 351 IGGFLTHCGW------NSVLEAVSNGLPMVTWPF 378 (476)
Q Consensus 351 ~~~~I~HgG~------~s~~eal~~GvP~l~~P~ 378 (476)
.++++.|.|- +++.+|...++|+|++.-
T Consensus 67 ~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~G 100 (578)
T PRK06546 67 LAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIAS 100 (578)
T ss_pred ceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3348888774 477899999999998853
Done!