Query 039702
Match_columns 397
No_of_seqs 128 out of 164
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 12:21:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06472 ACD_ScHsp26_like Alpha 99.9 5.2E-23 1.1E-27 167.2 10.1 92 296-395 1-92 (92)
2 PRK11597 heat shock chaperone 99.9 2.7E-22 5.9E-27 178.2 11.5 93 291-396 29-122 (142)
3 PRK10743 heat shock protein Ib 99.9 7.8E-22 1.7E-26 173.9 10.9 89 295-396 35-124 (137)
4 cd06471 ACD_LpsHSP_like Group 99.9 9E-22 1.9E-26 159.5 9.7 91 296-395 2-93 (93)
5 COG0071 IbpA Molecular chapero 99.8 5.4E-21 1.2E-25 167.9 11.1 95 293-396 39-133 (146)
6 cd06470 ACD_IbpA-B_like Alpha- 99.8 1.2E-20 2.6E-25 153.8 10.3 89 295-395 1-90 (90)
7 cd06497 ACD_alphaA-crystallin_ 99.8 5.9E-20 1.3E-24 149.7 9.9 83 298-395 4-86 (86)
8 cd06479 ACD_HspB7_like Alpha c 99.8 4.4E-20 9.6E-25 149.9 8.3 79 298-395 2-81 (81)
9 cd06475 ACD_HspB1_like Alpha c 99.8 1.8E-19 4E-24 146.8 9.4 84 296-394 2-85 (86)
10 cd06498 ACD_alphaB-crystallin_ 99.8 2.7E-19 5.9E-24 145.4 9.4 83 299-396 2-84 (84)
11 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 3.7E-19 8.1E-24 143.8 9.6 83 298-395 1-83 (83)
12 PF00011 HSP20: Hsp20/alpha cr 99.8 7E-19 1.5E-23 143.4 11.3 89 298-397 1-89 (102)
13 cd06476 ACD_HspB2_like Alpha c 99.8 1.8E-18 3.9E-23 140.7 8.9 81 300-395 3-83 (83)
14 cd06482 ACD_HspB10 Alpha cryst 99.8 1.5E-18 3.2E-23 142.9 8.3 81 302-394 6-86 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.8 2.7E-18 5.9E-23 133.9 8.2 88 298-395 1-88 (88)
16 cd06481 ACD_HspB9_like Alpha c 99.7 5.9E-18 1.3E-22 138.3 8.8 83 301-395 4-87 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.7 1.1E-17 2.4E-22 136.5 8.5 80 299-394 2-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.7 1.7E-17 3.7E-22 132.8 8.1 79 302-395 5-83 (83)
19 KOG0710 Molecular chaperone (s 99.5 9.4E-15 2E-19 135.4 6.8 99 292-397 82-181 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.5 1.9E-13 4.2E-18 113.8 8.9 89 291-394 2-90 (91)
21 cd00298 ACD_sHsps_p23-like Thi 99.4 1.3E-12 2.7E-17 97.3 8.0 79 300-395 2-80 (80)
22 cd06469 p23_DYX1C1_like p23_li 99.1 5.2E-10 1.1E-14 87.2 8.8 68 300-396 2-69 (78)
23 KOG3591 Alpha crystallins [Pos 98.9 6.3E-09 1.4E-13 95.7 9.6 90 292-396 60-149 (173)
24 cd06463 p23_like Proteins cont 98.8 6.3E-08 1.4E-12 74.2 9.0 74 300-397 2-75 (84)
25 PF05455 GvpH: GvpH; InterPro 98.6 2.1E-07 4.5E-12 86.4 9.2 76 294-396 91-168 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.3 3.9E-06 8.5E-11 65.9 7.8 76 298-397 1-76 (84)
27 PF04969 CS: CS domain; Inter 96.7 0.023 5E-07 43.2 9.9 75 297-395 3-79 (79)
28 PF08190 PIH1: pre-RNA process 96.6 0.0099 2.2E-07 57.7 8.6 66 303-394 260-327 (328)
29 cd06465 p23_hB-ind1_like p23_l 96.4 0.038 8.3E-07 46.3 9.9 77 296-397 2-78 (108)
30 cd06467 p23_NUDC_like p23_like 96.0 0.038 8.3E-07 43.6 7.8 71 300-397 4-76 (85)
31 cd06489 p23_CS_hSgt1_like p23_ 95.7 0.065 1.4E-06 42.8 8.0 73 300-396 3-75 (84)
32 cd06493 p23_NUDCD1_like p23_NU 95.3 0.19 4E-06 40.6 9.3 71 300-397 4-76 (85)
33 cd06468 p23_CacyBP p23_like do 94.9 0.21 4.6E-06 40.2 8.4 76 298-397 5-84 (92)
34 cd06488 p23_melusin_like p23_l 93.1 1 2.2E-05 36.6 9.2 74 298-396 4-78 (87)
35 cd06494 p23_NUDCD2_like p23-li 92.7 0.96 2.1E-05 38.0 8.8 70 299-396 10-81 (93)
36 cd00237 p23 p23 binds heat sho 89.3 3.8 8.2E-05 35.1 9.4 76 295-396 2-77 (106)
37 KOG1309 Suppressor of G2 allel 81.7 4.2 9.2E-05 38.9 6.4 77 296-396 5-81 (196)
38 PLN03088 SGT1, suppressor of 75.0 13 0.00028 37.5 8.0 77 296-396 158-234 (356)
39 cd06492 p23_mNUDC_like p23-lik 74.0 33 0.00071 28.2 8.8 68 302-396 6-77 (87)
40 cd06495 p23_NUDCD3_like p23-li 72.1 34 0.00073 29.4 8.7 72 301-396 11-85 (102)
41 cd06482 ACD_HspB10 Alpha cryst 52.3 21 0.00046 29.7 3.9 31 304-336 54-85 (87)
42 cd06477 ACD_HspB3_Like Alpha c 50.8 29 0.00063 28.6 4.4 31 305-337 51-82 (83)
43 cd06471 ACD_LpsHSP_like Group 48.0 25 0.00053 28.4 3.6 29 304-335 62-90 (93)
44 cd06464 ACD_sHsps-like Alpha-c 47.9 93 0.002 23.8 6.7 57 276-336 29-86 (88)
45 PF12992 DUF3876: Domain of un 43.2 45 0.00099 28.5 4.6 38 295-335 26-68 (95)
46 cd06472 ACD_ScHsp26_like Alpha 43.1 32 0.0007 27.9 3.6 30 303-335 59-89 (92)
47 PF04972 BON: BON domain; Int 40.4 42 0.0009 25.0 3.6 24 313-339 12-35 (64)
48 cd06480 ACD_HspB8_like Alpha-c 40.3 48 0.001 28.0 4.2 31 304-336 58-89 (91)
49 cd06478 ACD_HspB4-5-6 Alpha-cr 37.8 43 0.00094 27.1 3.5 29 306-336 52-81 (83)
50 cd06526 metazoan_ACD Alpha-cry 36.5 53 0.0012 26.1 3.8 31 304-336 50-81 (83)
51 cd06481 ACD_HspB9_like Alpha c 35.6 51 0.0011 27.0 3.6 33 302-336 52-85 (87)
52 PF13349 DUF4097: Domain of un 33.6 3.1E+02 0.0068 23.6 8.7 80 296-391 67-146 (166)
53 PF00011 HSP20: Hsp20/alpha cr 32.7 77 0.0017 25.6 4.2 35 302-339 53-88 (102)
54 cd06476 ACD_HspB2_like Alpha c 32.2 74 0.0016 26.0 4.0 29 306-336 52-81 (83)
55 PRK13276 cell wall biosynthesi 31.6 24 0.00052 34.4 1.3 33 155-189 173-205 (224)
56 cd06497 ACD_alphaA-crystallin_ 29.0 79 0.0017 25.9 3.7 29 306-336 55-84 (86)
57 cd06498 ACD_alphaB-crystallin_ 28.1 77 0.0017 25.9 3.5 30 306-337 52-82 (84)
58 PRK11198 LysM domain/BON super 27.2 70 0.0015 28.7 3.4 24 313-339 38-61 (147)
59 cd06490 p23_NCB5OR p23_like do 25.8 3.7E+02 0.0079 21.9 8.9 74 298-396 2-78 (87)
60 COG2846 Regulator of cell morp 25.6 29 0.00063 33.9 0.7 32 154-187 166-197 (221)
61 PF06977 SdiA-regulated: SdiA- 24.2 2.9E+02 0.0064 27.1 7.3 66 310-391 15-80 (248)
62 cd06470 ACD_IbpA-B_like Alpha- 21.1 1E+02 0.0022 25.1 3.0 30 362-393 11-40 (90)
63 PRK12700 flgH flagellar basal 20.1 1.5E+02 0.0032 29.2 4.3 15 325-339 152-166 (230)
No 1
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.89 E-value=5.2e-23 Score=167.21 Aligned_cols=92 Identities=24% Similarity=0.381 Sum_probs=79.2
Q ss_pred eeeeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCC
Q 039702 296 VVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVD 375 (397)
Q Consensus 296 aVDI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD 375 (397)
+|||+|++++|.|.|+||||+++||+|+ +..++.|+|+|+++.+... ...++++.++ .+|+|.|+|+||.+||
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~--v~~~~~L~I~g~~~~~~~~-~~~~~~~~e~----~~g~f~r~i~LP~~v~ 73 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVE--VEDGRVLRISGERKKEEEK-KGDDWHRVER----SSGRFVRRFRLPENAD 73 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEE--EeCCCEEEEEEEecccccc-cCCCEEEEEE----eccEEEEEEECCCCCC
Confidence 4899999999999999999999999999 8334699999998743322 3456665554 4799999999999999
Q ss_pred CCCcceeecCCCEEEEEeee
Q 039702 376 PRLFSPHFRCDGIFEAVVIK 395 (397)
Q Consensus 376 ~~~i~A~f~~DGVLei~VPK 395 (397)
++.|+|.|+ ||||+|+|||
T Consensus 74 ~~~i~A~~~-nGvL~I~lPK 92 (92)
T cd06472 74 ADEVKAFLE-NGVLTVTVPK 92 (92)
T ss_pred HHHCEEEEE-CCEEEEEecC
Confidence 999999999 9999999998
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.88 E-value=2.7e-22 Score=178.17 Aligned_cols=93 Identities=17% Similarity=0.336 Sum_probs=81.0
Q ss_pred CCCcceeeeEe-eCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEe
Q 039702 291 GPPIGVVDIGI-SKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFS 369 (397)
Q Consensus 291 GP~~~aVDI~E-~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~ 369 (397)
.+..|++||+| ++++|.|.|+||||+++||+|+ | ++|.|+|+|+++.+ ....++++.+++ +|+|+|+|+
T Consensus 29 ~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~--v-~~~~LtI~ge~~~~---~~~~~~~~~Er~----~g~F~R~f~ 98 (142)
T PRK11597 29 SQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQ--L-EGTRLTVKGTPEQP---EKEVKWLHQGLV----NQPFSLSFT 98 (142)
T ss_pred cCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEE--E-ECCEEEEEEEEccc---cCCCcEEEEEEe----CcEEEEEEE
Confidence 34557899998 5789999999999999999999 9 99999999997632 134567776655 799999999
Q ss_pred CCCCCCCCCcceeecCCCEEEEEeeec
Q 039702 370 LPGPVDPRLFSPHFRCDGIFEAVVIKQ 396 (397)
Q Consensus 370 LP~~VD~~~i~A~f~~DGVLei~VPK~ 396 (397)
||..||.+ +|+|+ ||||+|+|||.
T Consensus 99 LP~~vd~~--~A~~~-nGVL~I~lPK~ 122 (142)
T PRK11597 99 LAENMEVS--GATFV-NGLLHIDLIRN 122 (142)
T ss_pred CCCCcccC--cCEEc-CCEEEEEEecc
Confidence 99999998 79999 99999999995
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.87 E-value=7.8e-22 Score=173.90 Aligned_cols=89 Identities=12% Similarity=0.247 Sum_probs=77.3
Q ss_pred ceeeeE-eeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCC
Q 039702 295 GVVDIG-ISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGP 373 (397)
Q Consensus 295 ~aVDI~-E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~ 373 (397)
|++||+ |++++|.|+|+||||+++||+|+ + ++|.|+|+|+++.+. +..++++.++ .+|+|+|+|+||..
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~--v-~~~~LtI~ge~~~~~---~~~~~~~~Er----~~g~F~R~~~LP~~ 104 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEIT--A-QDNLLVVKGAHADEQ---KERTYLYQGI----AERNFERKFQLAEN 104 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEECccc---cCCcEEEEEE----ECCEEEEEEECCCC
Confidence 679999 59999999999999999999999 9 899999999976432 3445655544 47999999999999
Q ss_pred CCCCCcceeecCCCEEEEEeeec
Q 039702 374 VDPRLFSPHFRCDGIFEAVVIKQ 396 (397)
Q Consensus 374 VD~~~i~A~f~~DGVLei~VPK~ 396 (397)
||.+ +|.|+ ||||+|+|||.
T Consensus 105 Vd~~--~A~~~-dGVL~I~lPK~ 124 (137)
T PRK10743 105 IHVR--GANLV-NGLLYIDLERV 124 (137)
T ss_pred cccC--cCEEe-CCEEEEEEeCC
Confidence 9998 49999 99999999995
No 4
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.86 E-value=9e-22 Score=159.46 Aligned_cols=91 Identities=24% Similarity=0.418 Sum_probs=77.8
Q ss_pred eeeeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecce-eEeeccceEEeeccccCCCCcEEEEEeCCCCC
Q 039702 296 VVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGK-TIRKRSRVFRMRLHQICPPGQFTLDFSLPGPV 374 (397)
Q Consensus 296 aVDI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~-~~kr~~r~frm~~~~~cppG~FsRSF~LP~~V 374 (397)
++||+|++++|.|+++||||+++||+|+ + .+|.|+|+|+++... ......++++.+ +.+|+|.|+|+|| +|
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~--~-~~~~L~I~g~~~~~~~~~~~~~~~~~~e----~~~g~f~r~~~lp-~v 73 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLD--Y-KDGYLTISAKRDESKDEKDKKGNYIRRE----RYYGSFSRSFYLP-NV 73 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEccccccccccCCEEEEe----eeccEEEEEEECC-CC
Confidence 5899999999999999999999999999 8 899999999988321 111223565544 4479999999999 79
Q ss_pred CCCCcceeecCCCEEEEEeee
Q 039702 375 DPRLFSPHFRCDGIFEAVVIK 395 (397)
Q Consensus 375 D~~~i~A~f~~DGVLei~VPK 395 (397)
|+++++|+|+ ||||+|+|||
T Consensus 74 ~~~~i~A~~~-dGvL~I~lPK 93 (93)
T cd06471 74 DEEEIKAKYE-NGVLKITLPK 93 (93)
T ss_pred CHHHCEEEEE-CCEEEEEEcC
Confidence 9999999999 9999999998
No 5
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.4e-21 Score=167.86 Aligned_cols=95 Identities=24% Similarity=0.436 Sum_probs=83.4
Q ss_pred CcceeeeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCC
Q 039702 293 PIGVVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPG 372 (397)
Q Consensus 293 ~~~aVDI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~ 372 (397)
..|++||+|+++.|.|.++||||+++||+|+ + ++|.|+|+|+++.+... ....+++.++. +|+|.|+|+||.
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~--~-~~~~l~I~g~~~~~~~~-~~~~~~~~e~~----~~~f~r~~~Lp~ 110 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEIT--V-EGNTLTIRGEREEEEEE-EEEGYLRRERA----YGEFERTFRLPE 110 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEE--E-ECCEEEEEEEecccccc-cCCceEEEEEE----eeeEEEEEECcc
Confidence 5678999999999999999999999999999 8 99999999999853332 34455554544 799999999999
Q ss_pred CCCCCCcceeecCCCEEEEEeeec
Q 039702 373 PVDPRLFSPHFRCDGIFEAVVIKQ 396 (397)
Q Consensus 373 ~VD~~~i~A~f~~DGVLei~VPK~ 396 (397)
.||++.++|+|+ ||||+|+|||.
T Consensus 111 ~v~~~~~~A~~~-nGvL~I~lpk~ 133 (146)
T COG0071 111 KVDPEVIKAKYK-NGLLTVTLPKA 133 (146)
T ss_pred cccccceeeEee-CcEEEEEEecc
Confidence 999999999999 99999999995
No 6
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.84 E-value=1.2e-20 Score=153.75 Aligned_cols=89 Identities=12% Similarity=0.256 Sum_probs=76.8
Q ss_pred ceeeeEeeC-ceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCC
Q 039702 295 GVVDIGISK-LAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGP 373 (397)
Q Consensus 295 ~aVDI~E~d-daYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~ 373 (397)
|++||+|++ ++|.|.|+||||++++|+|+ + .+|.|+|+|+++.+.. ...++++.+ +.+|.|.|+|+||.+
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~--~-~~~~L~I~g~~~~~~~--~~~~~~~~e----~~~g~f~R~~~LP~~ 71 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIE--V-ENNQLTVTGKKADEEN--EEREYLHRG----IAKRAFERSFNLADH 71 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEccccc--CCCcEEEEE----EeceEEEEEEECCCC
Confidence 468999975 99999999999999999999 8 8999999999984433 345666544 447999999999999
Q ss_pred CCCCCcceeecCCCEEEEEeee
Q 039702 374 VDPRLFSPHFRCDGIFEAVVIK 395 (397)
Q Consensus 374 VD~~~i~A~f~~DGVLei~VPK 395 (397)
||.. +|.|+ ||||+|+||+
T Consensus 72 vd~~--~A~~~-~GvL~I~l~~ 90 (90)
T cd06470 72 VKVK--GAELE-NGLLTIDLER 90 (90)
T ss_pred ceEC--eeEEe-CCEEEEEEEC
Confidence 9975 99999 9999999985
No 7
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.82 E-value=5.9e-20 Score=149.75 Aligned_cols=83 Identities=16% Similarity=0.230 Sum_probs=71.9
Q ss_pred eeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCC
Q 039702 298 DIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPR 377 (397)
Q Consensus 298 DI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~ 377 (397)
+|.|++++|.|.++|||++++||+|+ + .+|.|+|+|++..+. ...++++. +|+|+|+||..||++
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~--v-~~~~L~I~g~~~~~~---~~~~~~~~---------ef~R~~~LP~~Vd~~ 68 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVK--V-LDDYVEIHGKHSERQ---DDHGYISR---------EFHRRYRLPSNVDQS 68 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEccee---CCCCEEEE---------EEEEEEECCCCCChH
Confidence 79999999999999999999999999 9 899999999865221 23345432 499999999999999
Q ss_pred CcceeecCCCEEEEEeee
Q 039702 378 LFSPHFRCDGIFEAVVIK 395 (397)
Q Consensus 378 ~i~A~f~~DGVLei~VPK 395 (397)
+|+|.|..||||+|++||
T Consensus 69 ~i~A~~~~dGvL~I~~PK 86 (86)
T cd06497 69 AITCSLSADGMLTFSGPK 86 (86)
T ss_pred HeEEEeCCCCEEEEEecC
Confidence 999999339999999998
No 8
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.81 E-value=4.4e-20 Score=149.87 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=71.4
Q ss_pred eeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCC
Q 039702 298 DIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPR 377 (397)
Q Consensus 298 DI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~ 377 (397)
||.|++++|.|.|+|||++++||+|+ + .+|.|+|+|+++.+. .+. +|+|+|+|+||.+||++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~--v-~~~~L~I~ger~~~~-----~~~----------~g~F~R~~~LP~~vd~e 63 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVT--T-SNNQIEVHAEKLASD-----GTV----------MNTFTHKCQLPEDVDPT 63 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEeccC-----CCE----------EEEEEEEEECCCCcCHH
Confidence 89999999999999999999999999 9 899999999976322 122 59999999999999999
Q ss_pred Ccceee-cCCCEEEEEeee
Q 039702 378 LFSPHF-RCDGIFEAVVIK 395 (397)
Q Consensus 378 ~i~A~f-~~DGVLei~VPK 395 (397)
.|+|+| + ||||+|++++
T Consensus 64 ~v~A~l~~-~GvL~I~~~~ 81 (81)
T cd06479 64 SVSSSLGE-DGTLTIKARR 81 (81)
T ss_pred HeEEEecC-CCEEEEEecC
Confidence 999997 7 9999999975
No 9
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.80 E-value=1.8e-19 Score=146.82 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=72.9
Q ss_pred eeeeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCC
Q 039702 296 VVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVD 375 (397)
Q Consensus 296 aVDI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD 375 (397)
+-||+|++++|.|.++|||+++++|+|+ + .+|.|+|+|+++.++ ....+. .++|+|+|+||..||
T Consensus 2 ~~~i~e~~~~~~v~~dlPG~~~edi~V~--v-~~~~L~I~g~~~~~~---~~~~~~---------~~~f~R~f~LP~~vd 66 (86)
T cd06475 2 MSEIRQTADRWKVSLDVNHFAPEELVVK--T-KDGVVEITGKHEEKQ---DEHGFV---------SRCFTRKYTLPPGVD 66 (86)
T ss_pred cceEEEcCCeEEEEEECCCCCHHHEEEE--E-ECCEEEEEEEECcCc---CCCCEE---------EEEEEEEEECCCCCC
Confidence 5699999999999999999999999999 9 889999999976321 122232 269999999999999
Q ss_pred CCCcceeecCCCEEEEEee
Q 039702 376 PRLFSPHFRCDGIFEAVVI 394 (397)
Q Consensus 376 ~~~i~A~f~~DGVLei~VP 394 (397)
+++++|.|+.||||+|++|
T Consensus 67 ~~~v~A~~~~dGvL~I~lP 85 (86)
T cd06475 67 PTAVTSSLSPDGILTVEAP 85 (86)
T ss_pred HHHcEEEECCCCeEEEEec
Confidence 9999999976999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.79 E-value=2.7e-19 Score=145.42 Aligned_cols=83 Identities=12% Similarity=0.265 Sum_probs=71.5
Q ss_pred eEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCC
Q 039702 299 IGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRL 378 (397)
Q Consensus 299 I~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~ 378 (397)
+++++++|.|.++|||++++||+|+ + .+|.|+|+|++..+. ...++++ ++|+|+|+||.+||+++
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~--v-~~~~L~I~g~~~~~~---~~~~~~~---------~eF~R~~~LP~~vd~~~ 66 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVK--V-LGDFIEIHGKHEERQ---DEHGFIS---------REFQRKYRIPADVDPLT 66 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEccee---CCCCEEE---------EEEEEEEECCCCCChHH
Confidence 5789999999999999999999999 9 899999999865221 2334442 46999999999999999
Q ss_pred cceeecCCCEEEEEeeec
Q 039702 379 FSPHFRCDGIFEAVVIKQ 396 (397)
Q Consensus 379 i~A~f~~DGVLei~VPK~ 396 (397)
|+|+|..||||+|++||.
T Consensus 67 i~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 67 ITSSLSPDGVLTVCGPRK 84 (84)
T ss_pred cEEEeCCCCEEEEEEeCC
Confidence 999995599999999984
No 11
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.79 E-value=3.7e-19 Score=143.82 Aligned_cols=83 Identities=14% Similarity=0.270 Sum_probs=71.0
Q ss_pred eeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCC
Q 039702 298 DIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPR 377 (397)
Q Consensus 298 DI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~ 377 (397)
.|.+++++|.|.++|||++++||+|+ + .+|.|+|+|++..+ ....+++++ +|+|+|+||..||++
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~--v-~~~~L~I~g~~~~~---~~~~~~~~~---------ef~R~~~LP~~vd~~ 65 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVK--V-LGDFVEIHGKHEER---QDEHGFISR---------EFHRRYRLPPGVDPA 65 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEceE---cCCCCEEEE---------EEEEEEECCCCcChH
Confidence 37899999999999999999999999 9 88999999986521 123345432 499999999999999
Q ss_pred CcceeecCCCEEEEEeee
Q 039702 378 LFSPHFRCDGIFEAVVIK 395 (397)
Q Consensus 378 ~i~A~f~~DGVLei~VPK 395 (397)
+|+|.|..||||+|++||
T Consensus 66 ~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 66 AITSSLSADGVLTISGPR 83 (83)
T ss_pred HeEEEECCCCEEEEEecC
Confidence 999999449999999998
No 12
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.79 E-value=7e-19 Score=143.39 Aligned_cols=89 Identities=24% Similarity=0.462 Sum_probs=72.6
Q ss_pred eeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCC
Q 039702 298 DIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPR 377 (397)
Q Consensus 298 DI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~ 377 (397)
||.|++++|.|.++|||+++++|+|+ + +++.|.|+|.++ ......+++..+ +.+|.|.|+|.||..||++
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~--~-~~~~L~I~g~~~---~~~~~~~~~~~~----~~~~~f~r~~~lP~~vd~~ 70 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIK--V-DDNKLVISGKRK---EEEEDDRYYRSE----RRYGSFERSIRLPEDVDPD 70 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEE--E-ETTEEEEEEEEE---GEECTTCEEEE-----S-SEEEEEEEE-STTB-GG
T ss_pred CeEECCCEEEEEEECCCCChHHEEEE--E-ecCccceeceee---eeeeeeeeeecc----cccceEEEEEcCCCcCCcc
Confidence 89999999999999999999999999 8 899999999988 223445565444 3479999999999999999
Q ss_pred CcceeecCCCEEEEEeeecC
Q 039702 378 LFSPHFRCDGIFEAVVIKQK 397 (397)
Q Consensus 378 ~i~A~f~~DGVLei~VPK~~ 397 (397)
+++|.|+ ||+|+|++||..
T Consensus 71 ~i~a~~~-~GvL~I~~pk~~ 89 (102)
T PF00011_consen 71 KIKASYE-NGVLTITIPKKE 89 (102)
T ss_dssp G-EEEET-TSEEEEEEEBSS
T ss_pred eEEEEec-CCEEEEEEEccc
Confidence 9999998 999999999963
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.76 E-value=1.8e-18 Score=140.66 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=68.9
Q ss_pred EeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCCc
Q 039702 300 GISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRLF 379 (397)
Q Consensus 300 ~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~i 379 (397)
--++++|.|.++|||++++||+|+ + .+|.|+|+|+++.+ .... .++ .++|+|+|+||..||+++|
T Consensus 3 ~~~~d~y~v~~dlpG~~~edi~V~--v-~~~~L~I~g~~~~~--~~~~-~~~---------~~eF~R~~~LP~~vd~~~v 67 (83)
T cd06476 3 ESEDDKYQVFLDVCHFTPDEITVR--T-VDNLLEVSARHPQR--MDRH-GFV---------SREFTRTYILPMDVDPLLV 67 (83)
T ss_pred eccCCeEEEEEEcCCCCHHHeEEE--E-ECCEEEEEEEEcce--ecCC-CEE---------EEEEEEEEECCCCCChhhE
Confidence 347899999999999999999999 9 89999999997521 1122 232 2679999999999999999
Q ss_pred ceeecCCCEEEEEeee
Q 039702 380 SPHFRCDGIFEAVVIK 395 (397)
Q Consensus 380 ~A~f~~DGVLei~VPK 395 (397)
+|.|..||||+|++||
T Consensus 68 ~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 68 RASLSHDGILCIQAPR 83 (83)
T ss_pred EEEecCCCEEEEEecC
Confidence 9999669999999997
No 14
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.76 E-value=1.5e-18 Score=142.92 Aligned_cols=81 Identities=16% Similarity=0.188 Sum_probs=68.3
Q ss_pred eCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCCcce
Q 039702 302 SKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRLFSP 381 (397)
Q Consensus 302 ~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~i~A 381 (397)
++++|.|.|+|||++++||+|+ | .+|.|+|+|+++.++... ..+ ++.+|+|+|+|+||.+||+++|+|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~--v-~~~~L~I~ger~~~~e~~-~~~--------er~~g~F~R~f~LP~~Vd~d~i~A 73 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVK--V-KDGKVQVSAERENRYDCL-GSK--------KYSYMNICKEFSLPPGVDEKDVTY 73 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEecccccC-Ccc--------EEEEEEEEEEEECCCCcChHHcEE
Confidence 6899999999999999999999 9 899999999987432211 111 123799999999999999999999
Q ss_pred eecCCCEEEEEee
Q 039702 382 HFRCDGIFEAVVI 394 (397)
Q Consensus 382 ~f~~DGVLei~VP 394 (397)
.|+.||||+|.-|
T Consensus 74 ~~~~~~~l~i~~~ 86 (87)
T cd06482 74 SYGLGSVVKIETP 86 (87)
T ss_pred EEcCCCEEEEeeC
Confidence 9997779999765
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.75 E-value=2.7e-18 Score=133.85 Aligned_cols=88 Identities=24% Similarity=0.447 Sum_probs=75.4
Q ss_pred eeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCC
Q 039702 298 DIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPR 377 (397)
Q Consensus 298 DI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~ 377 (397)
||.|++++|.|.++|||+++++|+|+ + .++.|.|+|.++....... ++. ..+|.+|.|.|+|+||..||++
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~--v-~~~~l~I~g~~~~~~~~~~--~~~----~~~~~~~~f~r~~~LP~~vd~~ 71 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVE--V-EDGVLTISGEREEEEEEEE--NYL----RRERSYGSFSRSFRLPEDVDPD 71 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEecccccCC--cEE----EEEEeCcEEEEEEECCCCcCHH
Confidence 68999999999999999999999999 8 8899999999883222111 222 3445589999999999999999
Q ss_pred CcceeecCCCEEEEEeee
Q 039702 378 LFSPHFRCDGIFEAVVIK 395 (397)
Q Consensus 378 ~i~A~f~~DGVLei~VPK 395 (397)
.++|.|+ ||+|+|++||
T Consensus 72 ~i~a~~~-~G~L~I~~pk 88 (88)
T cd06464 72 KIKASLE-NGVLTITLPK 88 (88)
T ss_pred HcEEEEe-CCEEEEEEcC
Confidence 9999999 8999999998
No 16
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.74 E-value=5.9e-18 Score=138.25 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=70.0
Q ss_pred eeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCCcc
Q 039702 301 ISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRLFS 380 (397)
Q Consensus 301 E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~i~ 380 (397)
+.+++|.|.|+|||++++||+|+ + .+|.|+|+|+++.+... ...++++ .+|+|+|+|+||..||++.|+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~--v-~~~~L~I~g~~~~~~~~-~~~~~~~-------~~~~F~R~~~LP~~Vd~~~i~ 72 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVR--V-DGRKLVVTGKREKKNED-EKGSFSY-------EYQEFVREAQLPEHVDPEAVT 72 (87)
T ss_pred CccceEEEEEECCCCChHHeEEE--E-ECCEEEEEEEEeeeccc-CCCcEEE-------EeeEEEEEEECCCCcChHHeE
Confidence 56799999999999999999999 9 89999999997633221 2233432 159999999999999999999
Q ss_pred eee-cCCCEEEEEeee
Q 039702 381 PHF-RCDGIFEAVVIK 395 (397)
Q Consensus 381 A~f-~~DGVLei~VPK 395 (397)
|.| + ||||+|++|.
T Consensus 73 A~~~~-dGvL~I~~P~ 87 (87)
T cd06481 73 CSLSP-SGHLHIRAPR 87 (87)
T ss_pred EEeCC-CceEEEEcCC
Confidence 999 7 9999999994
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.73 E-value=1.1e-17 Score=136.54 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=68.3
Q ss_pred eEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCC
Q 039702 299 IGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRL 378 (397)
Q Consensus 299 I~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~ 378 (397)
--|++++|.|+++|||++++||+|+ + .+|.|+|+|+++.+.. ..++. .++|+|+|+||..||+++
T Consensus 2 ~~e~~~~~~v~~dlpG~~~edI~V~--v-~~~~L~I~ge~~~~~~---~~~~~---------~r~F~R~~~LP~~Vd~~~ 66 (83)
T cd06477 2 QEEGKPMFQILLDVVQFRPEDIIIQ--V-FEGWLLIKGQHGVRMD---EHGFI---------SRSFTRQYQLPDGVEHKD 66 (83)
T ss_pred cccCCceEEEEEEcCCCCHHHeEEE--E-ECCEEEEEEEEccccC---CCCEE---------EEEEEEEEECCCCcchhe
Confidence 4589999999999999999999999 9 9999999999864221 12232 249999999999999999
Q ss_pred cceee-cCCCEEEEEee
Q 039702 379 FSPHF-RCDGIFEAVVI 394 (397)
Q Consensus 379 i~A~f-~~DGVLei~VP 394 (397)
|+|+| + ||||+|+.|
T Consensus 67 v~A~~~~-dGvL~I~~~ 82 (83)
T cd06477 67 LSAMLCH-DGILVVETK 82 (83)
T ss_pred EEEEEcC-CCEEEEEec
Confidence 99998 6 999999875
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.72 E-value=1.7e-17 Score=132.82 Aligned_cols=79 Identities=19% Similarity=0.368 Sum_probs=67.3
Q ss_pred eCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCCcce
Q 039702 302 SKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRLFSP 381 (397)
Q Consensus 302 ~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~i~A 381 (397)
+.++|.|.++|||++++||+|+ + .++.|+|+|+++.... ...+. .|+|.|+|+||..||++.++|
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~--v-~~~~L~I~g~~~~~~~--~~~~~----------~~~f~r~~~LP~~vd~~~i~A 69 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVK--V-SDNKLVVEGKHEERED--EHGYV----------SREFTRRYQLPEGVDPDSVTS 69 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEE--E-ECCEEEEEEEEeeecc--CCCEE----------EEEEEEEEECCCCCChHHeEE
Confidence 3469999999999999999999 9 8899999999873221 11111 499999999999999999999
Q ss_pred eecCCCEEEEEeee
Q 039702 382 HFRCDGIFEAVVIK 395 (397)
Q Consensus 382 ~f~~DGVLei~VPK 395 (397)
+|..||||+|++||
T Consensus 70 ~~~~~GvL~I~~Pk 83 (83)
T cd06526 70 SLSSDGVLTIEAPK 83 (83)
T ss_pred EeCCCcEEEEEecC
Confidence 99944999999998
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=9.4e-15 Score=135.41 Aligned_cols=99 Identities=22% Similarity=0.307 Sum_probs=81.9
Q ss_pred CCcceeeeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeE-eeccceEEeeccccCCCCcEEEEEeC
Q 039702 292 PPIGVVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTI-RKRSRVFRMRLHQICPPGQFTLDFSL 370 (397)
Q Consensus 292 P~~~aVDI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~-kr~~r~frm~~~~~cppG~FsRSF~L 370 (397)
+.-.+.||.|.+++|.|.++|||+++++|+|. ++++++++|+|+++.+... .....+.++++. .|.|.|.|+|
T Consensus 82 ~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~--~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~----~g~F~r~~~l 155 (196)
T KOG0710|consen 82 EARVPWDVKESPDAHEFKVDLPGLKKEDIKVE--VEDEKVLTISGERKKEEEESGSGKKWKRVERK----LGKFKRRFEL 155 (196)
T ss_pred cccCCcccccCCCceEEEeeCCCCCchhceEE--eccCcEEEEecccccccccccCCccceeehhc----ccceEeeecC
Confidence 33346789999999999999999999999999 9556689999999843222 133445444444 6999999999
Q ss_pred CCCCCCCCcceeecCCCEEEEEeeecC
Q 039702 371 PGPVDPRLFSPHFRCDGIFEAVVIKQK 397 (397)
Q Consensus 371 P~~VD~~~i~A~f~~DGVLei~VPK~~ 397 (397)
|..||.+.|+|.|. ||||.|+|||..
T Consensus 156 Penv~~d~ikA~~~-nGVL~VvvpK~~ 181 (196)
T KOG0710|consen 156 PENVDVDEIKAEME-NGVLTVVVPKLE 181 (196)
T ss_pred CccccHHHHHHHhh-CCeEEEEEeccc
Confidence 99999999999999 999999999963
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.47 E-value=1.9e-13 Score=113.75 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=74.7
Q ss_pred CCCcceeeeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeC
Q 039702 291 GPPIGVVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSL 370 (397)
Q Consensus 291 GP~~~aVDI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~L 370 (397)
||.-+.-.+..+++.|.|.+++-|.+++||+|+ + .+|.|+|+|+.+.++. . ..+. .++|+|+|+|
T Consensus 2 ~~~~~~~~~~~~~~~f~v~ldv~gF~pEDL~Vk--v-~~~~L~V~Gkh~~~~~--e-~g~~---------~r~F~R~~~L 66 (91)
T cd06480 2 GPPEPRNPPPNSSEPWKVCVNVHSFKPEELTVK--T-KDGFVEVSGKHEEQQK--E-GGIV---------SKNFTKKIQL 66 (91)
T ss_pred CCCcccCCCCCCCCcEEEEEEeCCCCHHHcEEE--E-ECCEEEEEEEECcccC--C-CCEE---------EEEEEEEEEC
Confidence 444444456678999999999999999999999 9 8999999999773221 1 2343 2899999999
Q ss_pred CCCCCCCCcceeecCCCEEEEEee
Q 039702 371 PGPVDPRLFSPHFRCDGIFEAVVI 394 (397)
Q Consensus 371 P~~VD~~~i~A~f~~DGVLei~VP 394 (397)
|..||++.|+|.+..||||+|..|
T Consensus 67 P~~Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 67 PPEVDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred CCCCCchhEEEEeCCCCeEEEEcC
Confidence 999999999999999999999988
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.39 E-value=1.3e-12 Score=97.25 Aligned_cols=79 Identities=23% Similarity=0.392 Sum_probs=69.6
Q ss_pred EeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCCc
Q 039702 300 GISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRLF 379 (397)
Q Consensus 300 ~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~i 379 (397)
+++++.|.|++.|||+.+++++|. + +++.|.|+|....... ..+..+.|.++|.||..||++.+
T Consensus 2 ~q~~~~v~i~i~~~~~~~~~i~v~--~-~~~~l~v~~~~~~~~~-------------~~~~~~~~~~~~~L~~~i~~~~~ 65 (80)
T cd00298 2 YQTDDEVVVTVDLPGVKKEDIKVE--V-EDNVLTISGKREEEEE-------------RERSYGEFERSFELPEDVDPEKS 65 (80)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEE--E-ECCEEEEEEEEcCCCc-------------ceEeeeeEEEEEECCCCcCHHHC
Confidence 688899999999999999999999 8 8899999999763211 12236899999999999999999
Q ss_pred ceeecCCCEEEEEeee
Q 039702 380 SPHFRCDGIFEAVVIK 395 (397)
Q Consensus 380 ~A~f~~DGVLei~VPK 395 (397)
+|.+. +|+|+|++||
T Consensus 66 ~~~~~-~~~l~i~l~K 80 (80)
T cd00298 66 KASLE-NGVLEITLPK 80 (80)
T ss_pred EEEEE-CCEEEEEEcC
Confidence 99999 8999999998
No 22
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.09 E-value=5.2e-10 Score=87.15 Aligned_cols=68 Identities=15% Similarity=0.256 Sum_probs=62.1
Q ss_pred EeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCCc
Q 039702 300 GISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRLF 379 (397)
Q Consensus 300 ~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~i 379 (397)
+++++.+.|.+.||||++++++|+ + +++.|+|+| .+|.+++.||+.||++..
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~--~-~~~~l~i~~-------------------------~~~~~~~~l~~~I~~e~~ 53 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIF--C-SDLYLKVNF-------------------------PPYLFELDLAAPIDDEKS 53 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEE--E-ecCEEEEcC-------------------------CCEEEEEeCccccccccc
Confidence 578999999999999999999999 8 788888877 137889999999999999
Q ss_pred ceeecCCCEEEEEeeec
Q 039702 380 SPHFRCDGIFEAVVIKQ 396 (397)
Q Consensus 380 ~A~f~~DGVLei~VPK~ 396 (397)
+|+++ +|.|+|+|+|.
T Consensus 54 ~~~~~-~~~l~i~L~K~ 69 (78)
T cd06469 54 SAKIG-NGVLVFTLVKK 69 (78)
T ss_pred EEEEe-CCEEEEEEEeC
Confidence 99999 99999999996
No 23
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=6.3e-09 Score=95.74 Aligned_cols=90 Identities=17% Similarity=0.254 Sum_probs=76.2
Q ss_pred CCcceeeeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCC
Q 039702 292 PPIGVVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLP 371 (397)
Q Consensus 292 P~~~aVDI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP 371 (397)
+..++..|..++++|-|.+++-..++++|+|. + .|+.|.|+|+....+ -++.-+. =+|+|.|.||
T Consensus 60 ~~~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk--~-~~~~l~V~gkHeer~--d~~G~v~----------R~F~R~y~LP 124 (173)
T KOG3591|consen 60 LSSGASEIVNDKDKFEVNLDVHQFKPEELKVK--T-DDNTLEVEGKHEEKE--DEHGYVS----------RSFVRKYLLP 124 (173)
T ss_pred CcccccccccCCCcEEEEEEcccCcccceEEE--e-CCCEEEEEeeecccc--CCCCeEE----------EEEEEEecCC
Confidence 45567899999999999999999999999999 8 888999999865211 1222221 3699999999
Q ss_pred CCCCCCCcceeecCCCEEEEEeeec
Q 039702 372 GPVDPRLFSPHFRCDGIFEAVVIKQ 396 (397)
Q Consensus 372 ~~VD~~~i~A~f~~DGVLei~VPK~ 396 (397)
..||++.|++.+.+||||+|.+||.
T Consensus 125 ~~vdp~~V~S~LS~dGvLtI~ap~~ 149 (173)
T KOG3591|consen 125 EDVDPTSVTSTLSSDGVLTIEAPKP 149 (173)
T ss_pred CCCChhheEEeeCCCceEEEEccCC
Confidence 9999999999999999999999985
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.75 E-value=6.3e-08 Score=74.24 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=65.0
Q ss_pred EeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCCc
Q 039702 300 GISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRLF 379 (397)
Q Consensus 300 ~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~i 379 (397)
+++++.+.|.+.+||+.+++++|. + +++.|+|++... ..+.|.+++.|+.+||++..
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~--~-~~~~l~i~~~~~--------------------~~~~~~~~~~L~~~I~~~~s 58 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVE--F-TPKSLTVSVKGG--------------------GGKEYLLEGELFGPIDPEES 58 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEE--E-ecCEEEEEeeCC--------------------CCCceEEeeEccCccchhhc
Confidence 468899999999999999999999 8 788999887632 13668899999999999999
Q ss_pred ceeecCCCEEEEEeeecC
Q 039702 380 SPHFRCDGIFEAVVIKQK 397 (397)
Q Consensus 380 ~A~f~~DGVLei~VPK~~ 397 (397)
+++++ +|.|+|+|+|.+
T Consensus 59 ~~~~~-~~~l~i~L~K~~ 75 (84)
T cd06463 59 KWTVE-DRKIEITLKKKE 75 (84)
T ss_pred EEEEe-CCEEEEEEEECC
Confidence 99999 999999999963
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.60 E-value=2.1e-07 Score=86.44 Aligned_cols=76 Identities=28% Similarity=0.395 Sum_probs=59.6
Q ss_pred cceeeeEeeCce-EEEEEEcCCCCCCc-ceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCC
Q 039702 294 IGVVDIGISKLA-YFFQAALPGVRRDY-SHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLP 371 (397)
Q Consensus 294 ~~aVDI~E~dda-Yli~veLPGVkkdd-I~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP 371 (397)
...|||.|.|++ .+|.|+||||.+++ |+|.++. ..+.|+|+.. +.+...+.||
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~-d~~~L~i~~~------------------------~~~~krv~L~ 145 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDD-DEGALTIRVG------------------------EKYLKRVALP 145 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeec-CCceEEEecC------------------------CceEeeEecC
Confidence 346899998885 99999999998888 9999555 5677776322 2233467899
Q ss_pred CCCCCCCcceeecCCCEEEEEeeec
Q 039702 372 GPVDPRLFSPHFRCDGIFEAVVIKQ 396 (397)
Q Consensus 372 ~~VD~~~i~A~f~~DGVLei~VPK~ 396 (397)
.+ +.+..+|.|+ ||||||+|-|.
T Consensus 146 ~~-~~e~~~~t~n-NgILEIri~~~ 168 (177)
T PF05455_consen 146 WP-DPEITSATFN-NGILEIRIRRT 168 (177)
T ss_pred CC-ccceeeEEEe-CceEEEEEeec
Confidence 77 6888899999 99999999764
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.27 E-value=3.9e-06 Score=65.92 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=64.7
Q ss_pred eeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCC
Q 039702 298 DIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPR 377 (397)
Q Consensus 298 DI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~ 377 (397)
|-+++++...|.+.+||+.+++++|. + +...|.|++... ..+.|...+.|.+.||++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~--~-~~~~l~i~~~~~--------------------~~~~~~~~~~L~~~I~~~ 57 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVE--F-NEQSLSVSIILP--------------------GGSEYQLELDLFGPIDPE 57 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEE--E-ecCEEEEEEECC--------------------CCCeEEEecccccccCch
Confidence 45788999999999999999999999 8 677888876521 024677889999999999
Q ss_pred CcceeecCCCEEEEEeeecC
Q 039702 378 LFSPHFRCDGIFEAVVIKQK 397 (397)
Q Consensus 378 ~i~A~f~~DGVLei~VPK~~ 397 (397)
..++.+. +|.|+|+|.|..
T Consensus 58 ~s~~~~~-~~~vei~L~K~~ 76 (84)
T cd06466 58 QSKVSVL-PTKVEITLKKAE 76 (84)
T ss_pred hcEEEEe-CeEEEEEEEcCC
Confidence 9999999 999999999963
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=96.73 E-value=0.023 Score=43.22 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=58.3
Q ss_pred eeeEeeCceEEEEEEcCCCC--CCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCC
Q 039702 297 VDIGISKLAYFFQAALPGVR--RDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPV 374 (397)
Q Consensus 297 VDI~E~ddaYli~veLPGVk--kddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~V 374 (397)
.+=+.+++...|.+.++++. +++++|. + ++..|.|+....++ -.|.....|.+.|
T Consensus 3 y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~--~-~~~~l~v~~~~~~~--------------------~~~~~~~~L~~~I 59 (79)
T PF04969_consen 3 YDWYQTDDEVTVTIPVKPVDISKEDVKVD--F-TDTSLSVSIKSGDG--------------------KEYLLEGELFGEI 59 (79)
T ss_dssp EEEEEESSEEEEEEE-TTTTSSGGGEEEE--E-ETTEEEEEEEETTS--------------------CEEEEEEEBSS-B
T ss_pred eEEEECCCEEEEEEEEcCCCCChHHeEEE--E-EeeEEEEEEEccCC--------------------ceEEEEEEEeeeE
Confidence 45578999999999996654 8999988 8 88888888442211 1345677899999
Q ss_pred CCCCcceeecCCCEEEEEeee
Q 039702 375 DPRLFSPHFRCDGIFEAVVIK 395 (397)
Q Consensus 375 D~~~i~A~f~~DGVLei~VPK 395 (397)
|++....... ++-|+|+|.|
T Consensus 60 ~~~~s~~~~~-~~~i~i~L~K 79 (79)
T PF04969_consen 60 DPDESTWKVK-DNKIEITLKK 79 (79)
T ss_dssp ECCCEEEEEE-TTEEEEEEEB
T ss_pred cchhcEEEEE-CCEEEEEEEC
Confidence 9999999999 8899999987
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=96.57 E-value=0.0099 Score=57.69 Aligned_cols=66 Identities=18% Similarity=0.341 Sum_probs=52.5
Q ss_pred CceEEEEEEcCCC-CCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCCcce
Q 039702 303 KLAYFFQAALPGV-RRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRLFSP 381 (397)
Q Consensus 303 ddaYli~veLPGV-kkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~i~A 381 (397)
-+...|+|+|||+ ...+|++. | ....|.|+... ..|.-.++||-+||.+..+|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~Ld--V-~~~~l~l~~~~-----------------------~~y~L~l~LP~~V~~~~~~A 313 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLD--V-SEDRLSLSSPK-----------------------PKYRLDLPLPYPVDEDNGKA 313 (328)
T ss_pred CceEEEEEECCCcCccceeEEE--E-eCCEEEEEeCC-----------------------CceEEEccCCCcccCCCceE
Confidence 5788999999999 88888888 8 66666654331 13456789999999999999
Q ss_pred eecCC-CEEEEEee
Q 039702 382 HFRCD-GIFEAVVI 394 (397)
Q Consensus 382 ~f~~D-GVLei~VP 394 (397)
+|... ++|+|+||
T Consensus 314 kf~~~~~~L~vtlp 327 (328)
T PF08190_consen 314 KFDKKTKTLTVTLP 327 (328)
T ss_pred EEccCCCEEEEEEE
Confidence 99844 59999998
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=96.38 E-value=0.038 Score=46.26 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=61.7
Q ss_pred eeeeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCC
Q 039702 296 VVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVD 375 (397)
Q Consensus 296 aVDI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD 375 (397)
.++=+.+++...|.+.+||+ ++++|+ + +...|+|++.-.. ..+ .|...+.|.+.|+
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~--~-~~~~l~v~~~~~~------~~~-------------~y~~~~~L~~~I~ 57 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIK--L-EPTSLSFKAKGGG------GGK-------------KYEFDLEFYKEID 57 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEE--E-ECCEEEEEEEcCC------CCe-------------eEEEEeEhhhhcc
Confidence 46778999999999999999 778888 7 7888998885211 111 1345678999999
Q ss_pred CCCcceeecCCCEEEEEeeecC
Q 039702 376 PRLFSPHFRCDGIFEAVVIKQK 397 (397)
Q Consensus 376 ~~~i~A~f~~DGVLei~VPK~~ 397 (397)
++..+.++. ++.++|+|.|..
T Consensus 58 pe~s~~~v~-~~kveI~L~K~~ 78 (108)
T cd06465 58 PEESKYKVT-GRQIEFVLRKKE 78 (108)
T ss_pred ccccEEEec-CCeEEEEEEECC
Confidence 999999999 799999999963
No 30
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=96.03 E-value=0.038 Score=43.58 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=55.2
Q ss_pred EeeCceEEEEEEcC-CCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCC
Q 039702 300 GISKLAYFFQAALP-GVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRL 378 (397)
Q Consensus 300 ~E~ddaYli~veLP-GVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~ 378 (397)
+++++...|.+.+| +++++||+|+ + +...|+|+.. + ...+ -.-.|.++||++.
T Consensus 4 ~Qt~~~V~i~i~~~~~~~~~dv~v~--~-~~~~l~v~~~--~------~~~~---------------l~~~L~~~I~~~~ 57 (85)
T cd06467 4 TQTLDEVTVTIPLPEGTKSKDVKVE--I-TPKHLKVGVK--G------GEPL---------------LDGELYAKVKVDE 57 (85)
T ss_pred EeeCCEEEEEEECCCCCcceeEEEE--E-EcCEEEEEEC--C------CCce---------------EcCcccCceeEcC
Confidence 56788899999997 7899999999 8 7788887642 1 1111 2235889999999
Q ss_pred cceeecCC-CEEEEEeeecC
Q 039702 379 FSPHFRCD-GIFEAVVIKQK 397 (397)
Q Consensus 379 i~A~f~~D-GVLei~VPK~~ 397 (397)
..-+.. + ..|+|+|.|.+
T Consensus 58 s~w~~~-~~~~v~i~L~K~~ 76 (85)
T cd06467 58 STWTLE-DGKLLEITLEKRN 76 (85)
T ss_pred CEEEEe-CCCEEEEEEEECC
Confidence 988888 7 79999999963
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=95.73 E-value=0.065 Score=42.77 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=59.4
Q ss_pred EeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCCc
Q 039702 300 GISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRLF 379 (397)
Q Consensus 300 ~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~i 379 (397)
+.+++...|.+.++|+.+++++|. + ++..|++++.... . -.|...+.|-+.|+++..
T Consensus 3 ~Q~~~~V~iti~~k~~~~~~~~v~--~-~~~~l~~~~~~~~------~--------------~~y~~~~~L~~~I~p~~s 59 (84)
T cd06489 3 YQTESQVVITILIKNVKPEDVSVE--F-EKRELSATVKLPS------G--------------NDYSLKLHLLHPIVPEQS 59 (84)
T ss_pred cccCCEEEEEEEECCCCHHHCEEE--E-eCCEEEEEEECCC------C--------------CcEEEeeecCceecchhc
Confidence 567788899999999999999999 8 7788988875321 1 124556789999999999
Q ss_pred ceeecCCCEEEEEeeec
Q 039702 380 SPHFRCDGIFEAVVIKQ 396 (397)
Q Consensus 380 ~A~f~~DGVLei~VPK~ 396 (397)
+.+.. ++-+||+|.|.
T Consensus 60 ~~~v~-~~kiei~L~K~ 75 (84)
T cd06489 60 SYKIL-STKIEIKLKKT 75 (84)
T ss_pred EEEEe-CcEEEEEEEcC
Confidence 99888 77899999985
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=95.31 E-value=0.19 Score=40.59 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=54.6
Q ss_pred EeeCceEEEEEEcC-CCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCC
Q 039702 300 GISKLAYFFQAALP-GVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRL 378 (397)
Q Consensus 300 ~E~ddaYli~veLP-GVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~ 378 (397)
+.+++...|.+-+| |+.++|++|+ + +...|+|+. +++ ..+ ..-.|.+.||++.
T Consensus 4 ~Qt~~~V~v~i~~p~~~~~~dv~v~--~-~~~~l~v~~--~~~------~~~---------------~~g~L~~~I~~d~ 57 (85)
T cd06493 4 QQTEEDLTLTIRLPEDTTKEDIRIK--F-LPDHISIAL--KDQ------APL---------------LEGKLYSSIDHES 57 (85)
T ss_pred EEeCCEEEEEEECCCCCChhhEEEE--E-ecCEEEEEe--CCC------CeE---------------EeCcccCcccccC
Confidence 56788899999996 9999999999 8 778888753 111 111 2237889999999
Q ss_pred cceeecCCC-EEEEEeeecC
Q 039702 379 FSPHFRCDG-IFEAVVIKQK 397 (397)
Q Consensus 379 i~A~f~~DG-VLei~VPK~~ 397 (397)
-.-..+ +| .|+|.|.|..
T Consensus 58 Stw~i~-~~~~l~i~L~K~~ 76 (85)
T cd06493 58 STWIIK-ENKSLEVSLIKKD 76 (85)
T ss_pred cEEEEe-CCCEEEEEEEECC
Confidence 888887 66 7999999963
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=94.85 E-value=0.21 Score=40.20 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=57.7
Q ss_pred eeEeeCceEEEEEEcCCCCC---CcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEE-eCCCC
Q 039702 298 DIGISKLAYFFQAALPGVRR---DYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDF-SLPGP 373 (397)
Q Consensus 298 DI~E~ddaYli~veLPGVkk---ddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF-~LP~~ 373 (397)
+=+.+++...|.+.+|++.. ++++|+ + +...|.|++...+ ..+ |.-.+ +|-++
T Consensus 5 ~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~--~-~~~~l~v~~~~~~------~~~--------------~~~~~~~L~~~ 61 (92)
T cd06468 5 AWDQSDKFVKIYITLKGVHQLPKENIQVE--F-TERSFELKVHDLN------GKN--------------YRFTINRLLKK 61 (92)
T ss_pred eeecCCCEEEEEEEccCCCcCCcccEEEE--e-cCCEEEEEEECCC------CcE--------------EEEEehHhhCc
Confidence 34677888999999999987 888888 8 7888998874211 111 22233 48899
Q ss_pred CCCCCcceeecCCCEEEEEeeecC
Q 039702 374 VDPRLFSPHFRCDGIFEAVVIKQK 397 (397)
Q Consensus 374 VD~~~i~A~f~~DGVLei~VPK~~ 397 (397)
|+++..+.... ++-++|+|.|.+
T Consensus 62 I~~e~s~~~~~-~~ki~i~L~K~~ 84 (92)
T cd06468 62 IDPEKSSFKVK-TDRIVITLAKKK 84 (92)
T ss_pred cCccccEEEEe-CCEEEEEEEeCC
Confidence 99999999998 778999999964
No 34
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=93.11 E-value=1 Score=36.64 Aligned_cols=74 Identities=18% Similarity=0.098 Sum_probs=59.2
Q ss_pred eeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCC-cEEEEEeCCCCCCC
Q 039702 298 DIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPG-QFTLDFSLPGPVDP 376 (397)
Q Consensus 298 DI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG-~FsRSF~LP~~VD~ 376 (397)
|=+.+++..+|.+-+.|++++++.|. + ++..|+|+..... | .|...+.|-++||+
T Consensus 4 dW~Qs~~~V~ItI~~k~~~~~~~~v~--~-~~~~l~v~~~~~~---------------------~~~y~~~l~L~~~I~~ 59 (87)
T cd06488 4 DWHQTGSHVVVSVYAKNSNPELSVVE--A-NSTVLTIHIVFEG---------------------NKEFQLDIELWGVIDV 59 (87)
T ss_pred cEeeCCCEEEEEEEECcCCccceEEE--e-cCCEEEEEEECCC---------------------CceEEEEeeccceECh
Confidence 55778899999999999999999999 7 6667777643221 2 25667899999999
Q ss_pred CCcceeecCCCEEEEEeeec
Q 039702 377 RLFSPHFRCDGIFEAVVIKQ 396 (397)
Q Consensus 377 ~~i~A~f~~DGVLei~VPK~ 396 (397)
+..+.+.. .+-+||+|.|.
T Consensus 60 ~~s~~~v~-~~kvei~L~K~ 78 (87)
T cd06488 60 EKSSVNML-PTKVEIKLRKA 78 (87)
T ss_pred hHcEEEec-CcEEEEEEEeC
Confidence 99888877 78999999986
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=92.69 E-value=0.96 Score=37.96 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=53.9
Q ss_pred eEeeCceEEEEEEcC-CCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCC
Q 039702 299 IGISKLAYFFQAALP-GVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPR 377 (397)
Q Consensus 299 I~E~ddaYli~veLP-GVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~ 377 (397)
=+.+.+...|.+.|| |++++|++|+ + +...|+|.- +++ . ++ -| .|...|+++
T Consensus 10 W~QT~~eV~v~i~lp~~~~~kdv~V~--i-~~~~l~V~~--~g~------~-~l---------~G------~L~~~I~~d 62 (93)
T cd06494 10 WYQTMDEVFIEVNVPPGTRAKDVKCK--L-GSRDISLAV--KGQ------E-VL---------KG------KLFDSVVAD 62 (93)
T ss_pred EEeEcCEEEEEEECCCCCceeeEEEE--E-EcCEEEEEE--CCE------E-EE---------cC------cccCccCcc
Confidence 356778888888887 8999999999 8 888888753 211 1 21 14 578999999
Q ss_pred CcceeecCCC-EEEEEeeec
Q 039702 378 LFSPHFRCDG-IFEAVVIKQ 396 (397)
Q Consensus 378 ~i~A~f~~DG-VLei~VPK~ 396 (397)
...=..+ || +|+|.|.|.
T Consensus 63 estWtle-d~k~l~I~L~K~ 81 (93)
T cd06494 63 ECTWTLE-DRKLIRIVLTKS 81 (93)
T ss_pred cCEEEEE-CCcEEEEEEEeC
Confidence 9888999 66 799999996
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=89.35 E-value=3.8 Score=35.14 Aligned_cols=76 Identities=11% Similarity=0.016 Sum_probs=55.9
Q ss_pred ceeeeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCC
Q 039702 295 GVVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPV 374 (397)
Q Consensus 295 ~aVDI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~V 374 (397)
|.++=+...+..+|.+.||++ +|++|+ + +...|+++|... ....+ .-++.|=++|
T Consensus 2 p~v~WaQr~~~V~ltI~v~d~--~d~~v~--l-~~~~l~f~~~~~------~g~~y--------------~~~l~l~~~I 56 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVEDS--KDVKVD--F-EKSKLTFSCLNG------DNVKI--------------YNEIELYDRV 56 (106)
T ss_pred CcceeeECCCEEEEEEEeCCC--CCcEEE--E-ecCEEEEEEECC------CCcEE--------------EEEEEeeccc
Confidence 357778889999999999994 788888 8 677899998321 11112 2346777899
Q ss_pred CCCCcceeecCCCEEEEEeeec
Q 039702 375 DPRLFSPHFRCDGIFEAVVIKQ 396 (397)
Q Consensus 375 D~~~i~A~f~~DGVLei~VPK~ 396 (397)
+++.-+.+-. +--++++|.|.
T Consensus 57 ~pe~Sk~~v~-~r~ve~~L~K~ 77 (106)
T cd00237 57 DPNDSKHKRT-DRSILCCLRKG 77 (106)
T ss_pred CcccCeEEeC-CceEEEEEEeC
Confidence 9987777765 55788999885
No 37
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=81.67 E-value=4.2 Score=38.94 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=54.1
Q ss_pred eeeeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCC
Q 039702 296 VVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVD 375 (397)
Q Consensus 296 aVDI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD 375 (397)
.-|-|+++....|.+-.++|.++++.|. + .+++|.|.-...++... ..--.|=++|.
T Consensus 5 r~DwyQt~~~vvIti~~k~v~~~~v~v~--~-s~~~l~~~~~~~~g~~~--------------------~l~~~L~~~I~ 61 (196)
T KOG1309|consen 5 RHDWYQTETSVVITIFAKNVPKEDVNVE--I-SENTLSIVIQLPSGSEY--------------------NLQLKLYHEII 61 (196)
T ss_pred cceeecCCceEEEEEEecCCCccceeEE--e-ecceEEEEEecCCchhh--------------------hhhHHhccccc
Confidence 4688999999999999999999999999 8 77888765443322111 11122557777
Q ss_pred CCCcceeecCCCEEEEEeeec
Q 039702 376 PRLFSPHFRCDGIFEAVVIKQ 396 (397)
Q Consensus 376 ~~~i~A~f~~DGVLei~VPK~ 396 (397)
+++.+-+.- --=+||+|+|.
T Consensus 62 pe~~s~k~~-stKVEI~L~K~ 81 (196)
T KOG1309|consen 62 PEKSSFKVF-STKVEITLAKA 81 (196)
T ss_pred ccceeeEee-eeeEEEEeccc
Confidence 776666555 45578888874
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=74.98 E-value=13 Score=37.51 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=60.5
Q ss_pred eeeeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCC
Q 039702 296 VVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVD 375 (397)
Q Consensus 296 aVDI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD 375 (397)
..|=+.+++..+|.|-+.||.++++.|. + ++..|.|+-...+ .+ .|...+.|-+.|+
T Consensus 158 r~dWyQs~~~V~i~i~~k~~~~~~~~v~--~-~~~~l~v~~~~~~------~~--------------~y~~~~~L~~~I~ 214 (356)
T PLN03088 158 RHEFYQKPEEVVVTVFAKGVPAENVNVD--F-GEQILSVVIEVPG------ED--------------AYHLQPRLFGKII 214 (356)
T ss_pred ccceeecCCEEEEEEEecCCChHHcEEE--e-ecCEEEEEEecCC------Cc--------------ceeeccccccccc
Confidence 4678888888999999999999999999 8 6778887654321 11 2444578999999
Q ss_pred CCCcceeecCCCEEEEEeeec
Q 039702 376 PRLFSPHFRCDGIFEAVVIKQ 396 (397)
Q Consensus 376 ~~~i~A~f~~DGVLei~VPK~ 396 (397)
++..+.+.. .--+||+|.|.
T Consensus 215 p~~s~~~v~-~~Kiei~l~K~ 234 (356)
T PLN03088 215 PDKCKYEVL-STKIEIRLAKA 234 (356)
T ss_pred ccccEEEEe-cceEEEEEecC
Confidence 999999988 55889999885
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=73.96 E-value=33 Score=28.24 Aligned_cols=68 Identities=13% Similarity=0.054 Sum_probs=47.2
Q ss_pred eCceEEEEEEcC---CCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCC
Q 039702 302 SKLAYFFQAALP---GVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRL 378 (397)
Q Consensus 302 ~ddaYli~veLP---GVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~ 378 (397)
+.+...|.+.|| |+++.|++|. + +...|+|.- ++. .+ ...=.|.+.||++.
T Consensus 6 T~~ev~v~v~l~~~~~~~~kdv~v~--i-~~~~l~v~~--~g~-------~~--------------~i~G~L~~~V~~de 59 (87)
T cd06492 6 TLSEVELKVPFKVSFRLKGKDVVVD--I-QRKHLKVGL--KGQ-------PP--------------IIDGELYNEVKVEE 59 (87)
T ss_pred ecCEEEEEEECCCCCCccceEEEEE--E-ecCEEEEEE--CCC-------ce--------------EEeCcccCcccccc
Confidence 445567788885 3888988888 8 666776521 211 11 12225679999988
Q ss_pred cceeecCCC-EEEEEeeec
Q 039702 379 FSPHFRCDG-IFEAVVIKQ 396 (397)
Q Consensus 379 i~A~f~~DG-VLei~VPK~ 396 (397)
-.=..+ || +|+|.|-|.
T Consensus 60 s~Wtle-d~~~l~i~L~K~ 77 (87)
T cd06492 60 SSWLIE-DGKVVTVNLEKI 77 (87)
T ss_pred cEEEEe-CCCEEEEEEEEC
Confidence 888888 76 999999986
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=72.14 E-value=34 Score=29.37 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=48.9
Q ss_pred eeCceEEEEEEcC-C-CCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCC
Q 039702 301 ISKLAYFFQAALP-G-VRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRL 378 (397)
Q Consensus 301 E~ddaYli~veLP-G-VkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~ 378 (397)
-+.+...|++.|| | ++.+|+.|. + +...|+|.-.-. +.+..+ ++ | .|...|+++.
T Consensus 11 QTl~eV~V~i~lp~~~~~~kdv~v~--i-~~~~l~v~~~~~------~~~~~~-i~-------G------~L~~~V~~de 67 (102)
T cd06495 11 QDYTDVEVRVPVPKDVVKGRQVSVD--L-QSSSIRVSVRDG------GGEKVL-ME-------G------EFTHKINTEN 67 (102)
T ss_pred eECCeEEEEEECCCCCccceEEEEE--E-EcCEEEEEEecC------CCCceE-Ee-------C------cccCcccCcc
Confidence 3667788999999 5 467888877 8 777777543210 011111 11 4 5778999988
Q ss_pred cceeecCCC-EEEEEeeec
Q 039702 379 FSPHFRCDG-IFEAVVIKQ 396 (397)
Q Consensus 379 i~A~f~~DG-VLei~VPK~ 396 (397)
-.=..+ || .|+|.|-|.
T Consensus 68 s~Wtle-d~~~l~I~L~K~ 85 (102)
T cd06495 68 SLWSLE-PGKCVLLSLSKC 85 (102)
T ss_pred ceEEEe-CCCEEEEEEEEC
Confidence 888888 87 689999885
No 41
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=52.31 E-value=21 Score=29.68 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=26.1
Q ss_pred ceEEEEEEcC-CCCCCcceeEEEeccCCEEEEEE
Q 039702 304 LAYFFQAALP-GVRRDYSHFSCEIEADGKVHIRG 336 (397)
Q Consensus 304 daYli~veLP-GVkkddI~Vsc~i~~dG~V~IsG 336 (397)
..|.=.+.|| +|+.+.|+=+ ...||+|+|.+
T Consensus 54 g~F~R~f~LP~~Vd~d~i~A~--~~~~~~l~i~~ 85 (87)
T cd06482 54 MNICKEFSLPPGVDEKDVTYS--YGLGSVVKIET 85 (87)
T ss_pred EEEEEEEECCCCcChHHcEEE--EcCCCEEEEee
Confidence 4456689999 7999999999 87788999976
No 42
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=50.85 E-value=29 Score=28.61 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=26.4
Q ss_pred eEEEEEEcC-CCCCCcceeEEEeccCCEEEEEEE
Q 039702 305 AYFFQAALP-GVRRDYSHFSCEIEADGKVHIRGS 337 (397)
Q Consensus 305 aYli~veLP-GVkkddI~Vsc~i~~dG~V~IsGe 337 (397)
.|.=.+.|| +|+.+.|+=+ ...||+|+|.|.
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~--~~~dGvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAM--LCHDGILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEE--EcCCCEEEEEec
Confidence 777889999 9999999877 547999999873
No 43
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=47.95 E-value=25 Score=28.40 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=23.8
Q ss_pred ceEEEEEEcCCCCCCcceeEEEeccCCEEEEE
Q 039702 304 LAYFFQAALPGVRRDYSHFSCEIEADGKVHIR 335 (397)
Q Consensus 304 daYli~veLPGVkkddI~Vsc~i~~dG~V~Is 335 (397)
..|.-.+.||.|+.+.++-+ . .||+|+|.
T Consensus 62 g~f~r~~~lp~v~~~~i~A~--~-~dGvL~I~ 90 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAK--Y-ENGVLKIT 90 (93)
T ss_pred cEEEEEEECCCCCHHHCEEE--E-ECCEEEEE
Confidence 34666678999999997777 8 99999986
No 44
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=47.89 E-value=93 Score=23.76 Aligned_cols=57 Identities=19% Similarity=0.164 Sum_probs=35.9
Q ss_pred CCceeEEeeccCCCCCCCcceeeeEeeCceEEEEEEcC-CCCCCcceeEEEeccCCEEEEEE
Q 039702 276 DASVTLTGTATKGMVGPPIGVVDIGISKLAYFFQAALP-GVRRDYSHFSCEIEADGKVHIRG 336 (397)
Q Consensus 276 ~~~~~ltG~a~~g~~GP~~~aVDI~E~ddaYli~veLP-GVkkddI~Vsc~i~~dG~V~IsG 336 (397)
...+.++|.......... ...--......|.-.+.|| +++.+.++.+ . .+|+|+|.-
T Consensus 29 ~~~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~--~-~~G~L~I~~ 86 (88)
T cd06464 29 DGVLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKAS--L-ENGVLTITL 86 (88)
T ss_pred CCEEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEE--E-eCCEEEEEE
Confidence 355667777422111111 1123344568899999999 7777766666 8 789999974
No 45
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=43.17 E-value=45 Score=28.51 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=29.0
Q ss_pred ceeeeEeeCceEEEEEEcCCC-----CCCcceeEEEeccCCEEEEE
Q 039702 295 GVVDIGISKLAYFFQAALPGV-----RRDYSHFSCEIEADGKVHIR 335 (397)
Q Consensus 295 ~aVDI~E~ddaYli~veLPGV-----kkddI~Vsc~i~~dG~V~Is 335 (397)
|+|.|++++++|.|.+--+.- +.+...|. +++|.+-|.
T Consensus 26 P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~---~~~g~~fI~ 68 (95)
T PF12992_consen 26 PDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQ---EEDGNLFIE 68 (95)
T ss_pred CCEEEEECCCeEEEEEEEEcCcCCcccceEEEEE---EeCCEEEEe
Confidence 579999999999999987775 44444454 578888875
No 46
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=43.13 E-value=32 Score=27.88 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=25.8
Q ss_pred CceEEEEEEcC-CCCCCcceeEEEeccCCEEEEE
Q 039702 303 KLAYFFQAALP-GVRRDYSHFSCEIEADGKVHIR 335 (397)
Q Consensus 303 ddaYli~veLP-GVkkddI~Vsc~i~~dG~V~Is 335 (397)
...|.-.+.|| .|+.+.|+-+ . .||+|+|+
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~--~-~nGvL~I~ 89 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAF--L-ENGVLTVT 89 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEE--E-ECCEEEEE
Confidence 45888899999 6888888888 8 89999986
No 47
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=40.40 E-value=42 Score=25.03 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=19.3
Q ss_pred CCCCCCcceeEEEeccCCEEEEEEEEe
Q 039702 313 PGVRRDYSHFSCEIEADGKVHIRGSTS 339 (397)
Q Consensus 313 PGVkkddI~Vsc~i~~dG~V~IsGe~k 339 (397)
|+++..+|+|+ + .+|.|+|+|+..
T Consensus 12 ~~~~~~~i~v~--v-~~g~v~L~G~v~ 35 (64)
T PF04972_consen 12 PWLPDSNISVS--V-ENGVVTLSGEVP 35 (64)
T ss_dssp -CTT-TTEEEE--E-ECTEEEEEEEES
T ss_pred cccCCCeEEEE--E-ECCEEEEEeeCc
Confidence 45666789999 8 899999999986
No 48
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=40.31 E-value=48 Score=27.97 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=25.8
Q ss_pred ceEEEEEEcC-CCCCCcceeEEEeccCCEEEEEE
Q 039702 304 LAYFFQAALP-GVRRDYSHFSCEIEADGKVHIRG 336 (397)
Q Consensus 304 daYli~veLP-GVkkddI~Vsc~i~~dG~V~IsG 336 (397)
..|.=+..|| +|+.+.|.=+ +..||+|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~--l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFAS--LSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEE--eCCCCeEEEEc
Confidence 6788889999 8988887766 85699999976
No 49
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=37.80 E-value=43 Score=27.10 Aligned_cols=29 Identities=34% Similarity=0.490 Sum_probs=24.4
Q ss_pred EEEEEEcC-CCCCCcceeEEEeccCCEEEEEE
Q 039702 306 YFFQAALP-GVRRDYSHFSCEIEADGKVHIRG 336 (397)
Q Consensus 306 Yli~veLP-GVkkddI~Vsc~i~~dG~V~IsG 336 (397)
|.=.+.|| +|+.+.|+-+ ...||+|+|+.
T Consensus 52 f~R~~~LP~~vd~~~i~A~--~~~dGvL~I~~ 81 (83)
T cd06478 52 FHRRYRLPPGVDPAAITSS--LSADGVLTISG 81 (83)
T ss_pred EEEEEECCCCcChHHeEEE--ECCCCEEEEEe
Confidence 77889998 6999988877 74599999975
No 50
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=36.45 E-value=53 Score=26.14 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=25.3
Q ss_pred ceEEEEEEcC-CCCCCcceeEEEeccCCEEEEEE
Q 039702 304 LAYFFQAALP-GVRRDYSHFSCEIEADGKVHIRG 336 (397)
Q Consensus 304 daYli~veLP-GVkkddI~Vsc~i~~dG~V~IsG 336 (397)
..|.=++.|| .|+.+.++-+ +..+|+|+|+.
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~--~~~~GvL~I~~ 81 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSS--LSSDGVLTIEA 81 (83)
T ss_pred EEEEEEEECCCCCChHHeEEE--eCCCcEEEEEe
Confidence 6788899999 7888888877 83349999986
No 51
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=35.56 E-value=51 Score=27.04 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=27.7
Q ss_pred eCceEEEEEEcC-CCCCCcceeEEEeccCCEEEEEE
Q 039702 302 SKLAYFFQAALP-GVRRDYSHFSCEIEADGKVHIRG 336 (397)
Q Consensus 302 ~ddaYli~veLP-GVkkddI~Vsc~i~~dG~V~IsG 336 (397)
....|.=.+.|| +|+.+.|.-+ +..||+|+|.+
T Consensus 52 ~~~~F~R~~~LP~~Vd~~~i~A~--~~~dGvL~I~~ 85 (87)
T cd06481 52 EYQEFVREAQLPEHVDPEAVTCS--LSPSGHLHIRA 85 (87)
T ss_pred EeeEEEEEEECCCCcChHHeEEE--eCCCceEEEEc
Confidence 356788899999 7999999888 65799999975
No 52
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=33.61 E-value=3.1e+02 Score=23.61 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=49.3
Q ss_pred eeeeEeeCceEEEEEEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCC
Q 039702 296 VVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVD 375 (397)
Q Consensus 296 aVDI~E~ddaYli~veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD 375 (397)
.|.|...++ +-++++. ..+.++++ . ++|+|+|+.... +... ...+.+..+ .+.-...+.||....
T Consensus 67 ~V~I~~~~~-~~i~v~~---~~k~~~~~--~-~~~~L~I~~~~~-~~~~---~~~~~~~~~----~~~~~i~I~lP~~~~ 131 (166)
T PF13349_consen 67 DVEIKPSDD-DKIKVEY---NGKKPEIS--V-EGGTLTIKSKDR-ESFF---FKGFNFNNS----DNKSKITIYLPKDYK 131 (166)
T ss_pred eEEEEEcCC-ccEEEEE---cCcEEEEE--E-cCCEEEEEEecc-cccc---cceEEEccc----CCCcEEEEEECCCCc
Confidence 577777666 5567777 22245555 7 899999987722 1110 112222111 256678899999887
Q ss_pred CCCcceeecCCCEEEE
Q 039702 376 PRLFSPHFRCDGIFEA 391 (397)
Q Consensus 376 ~~~i~A~f~~DGVLei 391 (397)
.+.++.+-. .|=+++
T Consensus 132 l~~i~i~~~-~G~i~i 146 (166)
T PF13349_consen 132 LDKIDIKTS-SGDITI 146 (166)
T ss_pred eeEEEEEec-cccEEE
Confidence 778887777 776555
No 53
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=32.70 E-value=77 Score=25.63 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=24.8
Q ss_pred eCceEEEEEEcC-CCCCCcceeEEEeccCCEEEEEEEEe
Q 039702 302 SKLAYFFQAALP-GVRRDYSHFSCEIEADGKVHIRGSTS 339 (397)
Q Consensus 302 ~ddaYli~veLP-GVkkddI~Vsc~i~~dG~V~IsGe~k 339 (397)
....|.-.+.|| +|+.+.|+-+ + .||+|+|..-..
T Consensus 53 ~~~~f~r~~~lP~~vd~~~i~a~--~-~~GvL~I~~pk~ 88 (102)
T PF00011_consen 53 RYGSFERSIRLPEDVDPDKIKAS--Y-ENGVLTITIPKK 88 (102)
T ss_dssp -SEEEEEEEE-STTB-GGG-EEE--E-TTSEEEEEEEBS
T ss_pred ccceEEEEEcCCCcCCcceEEEE--e-cCCEEEEEEEcc
Confidence 345677789999 5666666666 9 999999998876
No 54
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=32.25 E-value=74 Score=26.02 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=24.4
Q ss_pred EEEEEEcC-CCCCCcceeEEEeccCCEEEEEE
Q 039702 306 YFFQAALP-GVRRDYSHFSCEIEADGKVHIRG 336 (397)
Q Consensus 306 Yli~veLP-GVkkddI~Vsc~i~~dG~V~IsG 336 (397)
|.=...|| +|+.+.|+=+ ...||+|+|..
T Consensus 52 F~R~~~LP~~vd~~~v~A~--~~~dGvL~I~~ 81 (83)
T cd06476 52 FTRTYILPMDVDPLLVRAS--LSHDGILCIQA 81 (83)
T ss_pred EEEEEECCCCCChhhEEEE--ecCCCEEEEEe
Confidence 77789999 7999988887 74599999975
No 55
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=31.55 E-value=24 Score=34.41 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=25.5
Q ss_pred HHHHhhhccCCCccccCcccccchhcccccccccc
Q 039702 155 DLVRFRSLSGMDDLKIDKIKSLCYEHEYKKRKEDG 189 (397)
Q Consensus 155 d~~Rf~~LTG~d~f~id~~as~s~r~~p~~~~e~e 189 (397)
.+++.++|| +||++|.+||.+||.....=.+++
T Consensus 173 ~l~~i~~lT--n~yt~P~~AC~t~r~ly~~L~~fe 205 (224)
T PRK13276 173 LLVKMSELT--SSYEPPIEACGTWRLVYQRLKALE 205 (224)
T ss_pred HHHHHHHHh--CCCCCCcchhHHHHHHHHHHHHHH
Confidence 467888887 499999999999998865544433
No 56
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=28.95 E-value=79 Score=25.87 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=23.9
Q ss_pred EEEEEEcC-CCCCCcceeEEEeccCCEEEEEE
Q 039702 306 YFFQAALP-GVRRDYSHFSCEIEADGKVHIRG 336 (397)
Q Consensus 306 Yli~veLP-GVkkddI~Vsc~i~~dG~V~IsG 336 (397)
|.=++.|| +|+.+.|+=+ +..||+|+|..
T Consensus 55 f~R~~~LP~~Vd~~~i~A~--~~~dGvL~I~~ 84 (86)
T cd06497 55 FHRRYRLPSNVDQSAITCS--LSADGMLTFSG 84 (86)
T ss_pred EEEEEECCCCCChHHeEEE--eCCCCEEEEEe
Confidence 77789998 5999988777 74699999975
No 57
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=28.10 E-value=77 Score=25.88 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=25.3
Q ss_pred EEEEEEcC-CCCCCcceeEEEeccCCEEEEEEE
Q 039702 306 YFFQAALP-GVRRDYSHFSCEIEADGKVHIRGS 337 (397)
Q Consensus 306 Yli~veLP-GVkkddI~Vsc~i~~dG~V~IsGe 337 (397)
|.=.+.|| +|+.+.|+=+ ...||+|+|..-
T Consensus 52 F~R~~~LP~~vd~~~i~A~--~~~dGvL~I~lP 82 (84)
T cd06498 52 FQRKYRIPADVDPLTITSS--LSPDGVLTVCGP 82 (84)
T ss_pred EEEEEECCCCCChHHcEEE--eCCCCEEEEEEe
Confidence 77889998 7999999888 834999999864
No 58
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=27.17 E-value=70 Score=28.71 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.8
Q ss_pred CCCCCCcceeEEEeccCCEEEEEEEEe
Q 039702 313 PGVRRDYSHFSCEIEADGKVHIRGSTS 339 (397)
Q Consensus 313 PGVkkddI~Vsc~i~~dG~V~IsGe~k 339 (397)
-|+...+++|. + ++|+|+++|...
T Consensus 38 ~~~~~~~i~V~--v-~~G~v~l~G~v~ 61 (147)
T PRK11198 38 QGLGDADVNVQ--V-EDGKATVSGDAA 61 (147)
T ss_pred cCCCcCCceEE--E-eCCEEEEEEEeC
Confidence 47777888998 8 899999999986
No 59
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=25.77 E-value=3.7e+02 Score=21.89 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=44.4
Q ss_pred eeEeeCceEEEEEEcCCC--CCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCC
Q 039702 298 DIGISKLAYFFQAALPGV--RRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVD 375 (397)
Q Consensus 298 DI~E~ddaYli~veLPGV--kkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD 375 (397)
|=|.+++..+|.+-..+. .++.+.|. . ....|+|+=... + -.|...|.|-++||
T Consensus 2 DWyQt~~~Vtitiy~K~~~~~~~~v~v~--~-~~~~l~v~~~~~--------~-------------~~~~~~~~L~~~I~ 57 (87)
T cd06490 2 DWFQTDSEVTIVVYTKSKGNPADIVIVD--D-QQRELRVEIILG--------D-------------KSYLLHLDLSNEVQ 57 (87)
T ss_pred CceECCCEEEEEEEEcccCCCCccEEEE--C-CCCEEEEEEECC--------C-------------ceEEEeeeccccCC
Confidence 335667777777776643 33333444 4 334555432110 0 12667789999999
Q ss_pred CCCcceeecC-CCEEEEEeeec
Q 039702 376 PRLFSPHFRC-DGIFEAVVIKQ 396 (397)
Q Consensus 376 ~~~i~A~f~~-DGVLei~VPK~ 396 (397)
++. +.++.. -|=+||++.|.
T Consensus 58 ~~~-~~~~~~~~~KVEI~L~K~ 78 (87)
T cd06490 58 WPC-EVRISTETGKIELVLKKK 78 (87)
T ss_pred CCc-EEEEcccCceEEEEEEcC
Confidence 875 665553 35799999985
No 60
>COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning]
Probab=25.61 E-value=29 Score=33.94 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=26.3
Q ss_pred HHHHHhhhccCCCccccCcccccchhcccccccc
Q 039702 154 EDLVRFRSLSGMDDLKIDKIKSLCYEHEYKKRKE 187 (397)
Q Consensus 154 ed~~Rf~~LTG~d~f~id~~as~s~r~~p~~~~e 187 (397)
+.+++.|.|| .|++.|.+||.+|+-+++--.+
T Consensus 166 ~~l~~lk~lT--~n~tpP~~AC~tWkalY~gl~~ 197 (221)
T COG2846 166 ELLEVLKHLT--NNYTPPEEACGTWKALYNGLNE 197 (221)
T ss_pred HHHHHHHHHh--cCCCCChHHHhHHHHHHHHHHH
Confidence 5688999998 5999999999999988664443
No 61
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=24.16 E-value=2.9e+02 Score=27.10 Aligned_cols=66 Identities=17% Similarity=0.318 Sum_probs=38.4
Q ss_pred EEcCCCCCCcceeEEEeccCCEEEEEEEEecceeEeeccceEEeeccccCCCCcEEEEEeCCCCCCCCCcceeecCCCEE
Q 039702 310 AALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRLFSPHFRCDGIF 389 (397)
Q Consensus 310 veLPGVkkddI~Vsc~i~~dG~V~IsGe~k~e~~~kr~~r~frm~~~~~cppG~FsRSF~LP~~VD~~~i~A~f~~DGVL 389 (397)
-.|||+.++=--++|+- +++.|- .+..+ ...+|.+... |+..|+++|.+--|++.|+. .+ +|.+
T Consensus 15 ~~l~g~~~e~SGLTy~p-d~~tLf---aV~d~-----~~~i~els~~-----G~vlr~i~l~g~~D~EgI~y-~g-~~~~ 78 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNP-DTGTLF---AVQDE-----PGEIYELSLD-----GKVLRRIPLDGFGDYEGITY-LG-NGRY 78 (248)
T ss_dssp EE-TT--S-EEEEEEET-TTTEEE---EEETT-----TTEEEEEETT-------EEEEEE-SS-SSEEEEEE--S-TTEE
T ss_pred eECCCccCCccccEEcC-CCCeEE---EEECC-----CCEEEEEcCC-----CCEEEEEeCCCCCCceeEEE-EC-CCEE
Confidence 47999999866788766 567665 22311 2346666654 99999999999889998876 34 6644
Q ss_pred EE
Q 039702 390 EA 391 (397)
Q Consensus 390 ei 391 (397)
-|
T Consensus 79 vl 80 (248)
T PF06977_consen 79 VL 80 (248)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 62
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=21.13 E-value=1e+02 Score=25.09 Aligned_cols=30 Identities=3% Similarity=0.183 Sum_probs=25.7
Q ss_pred CcEEEEEeCCCCCCCCCcceeecCCCEEEEEe
Q 039702 362 GQFTLDFSLPGPVDPRLFSPHFRCDGIFEAVV 393 (397)
Q Consensus 362 G~FsRSF~LP~~VD~~~i~A~f~~DGVLei~V 393 (397)
+.|...+.||| |+.+.|+-... ++.|+|.-
T Consensus 11 ~~~~v~~~lPG-~~kedi~v~~~-~~~L~I~g 40 (90)
T cd06470 11 NNYRITLAVAG-FSEDDLEIEVE-NNQLTVTG 40 (90)
T ss_pred CeEEEEEECCC-CCHHHeEEEEE-CCEEEEEE
Confidence 67888999998 78888999998 88888874
No 63
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=20.08 E-value=1.5e+02 Score=29.19 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=13.3
Q ss_pred EeccCCEEEEEEEEe
Q 039702 325 EIEADGKVHIRGSTS 339 (397)
Q Consensus 325 ~i~~dG~V~IsGe~k 339 (397)
+|..+|.|.|+||+.
T Consensus 152 ~VlpNGNLvI~GeK~ 166 (230)
T PRK12700 152 GVLPNGNLQIAGEKQ 166 (230)
T ss_pred EECCCCCEEEEEEEE
Confidence 577999999999976
Done!