RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 039702
(397 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 38.7 bits (91), Expect = 4e-04
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 298 DIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQ 357
D+ + AY +A LPG +++ E+E DG + I G + L +
Sbjct: 1 DVYETDDAYVVEADLPGFKKE--DIKVEVE-DGVLTISG------EREEEEEEEENYLRR 51
Query: 358 ICPPGQFTLDFSLPGPVDP 376
G F+ F LP VDP
Sbjct: 52 ERSYGSFSRSFRLPEDVDP 70
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 35.0 bits (81), Expect = 0.018
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 305 AYFFQAALPGVRRDYSHFSCEIEADG-KVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQ 363
Y A LPGV ++ EI +G + IRG + + + R R G+
Sbjct: 51 EYRITAELPGVDKE----DIEITVEGNTLTIRGEREEEEEEEEEGYLRRER-----AYGE 101
Query: 364 FTLDFSLPGPVDP 376
F F LP VDP
Sbjct: 102 FERTFRLPEKVDP 114
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 33.7 bits (78), Expect = 0.018
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 16/72 (22%)
Query: 305 AYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQF 364
LPGV+++ E+E D + I G + +R R + G+F
Sbjct: 7 EVVVTVDLPGVKKE--DIKVEVE-DNVLTISGK---REEEEERERSY----------GEF 50
Query: 365 TLDFSLPGPVDP 376
F LP VDP
Sbjct: 51 ERSFELPEDVDP 62
>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional.
Length = 1374
Score = 31.2 bits (70), Expect = 1.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 33 LGPDVFFDNPRRSASQRLAQALPPYTSNSLSFSFVSLSQLESLYYY 78
L D RR Q L + +P +SLS F+ L L+S Y Y
Sbjct: 792 LHKDALVPAQRRRFQQLLERVIPTVAGSSLSLVFIMLLSLQSTYSY 837
>gnl|CDD|241474 cd13320, PH_OCRL-like, oculocerebrorenal syndrome of Lowe family
Pleckstrin homology-like domain. The OCRL family has
two members: OCRL1 (also called INPP5F, LOCR, NPHL2, or
phosphatidylinositol polyphosphate 5-phosphatase) and
OCRL2 ( also called IPNNB5, inositol
polyphosphate-5-phosphatase, phosphoinositide
5-phosphatase, 5PTase, or type II
inositol-1,4,5-trisphosphate 5-phosphatase). The OCRL
proteins hydrolyze phosphatidylinositol 4,5-bisphosphate
(PtIns(4,5)P2) and the signaling molecule
phosphatidylinositol 1,4,5-trisphosphate
(PtIns(1,4,5)P3), and thereby modulates cellular
signaling events. They interact with APPL1, FAM109A and
FAM109B and several Rab GTPases which might both target
them to the specific membranes and as well as
stimulating the phosphatase activity. All OCRL family
members contain a PH domain and a Rho-GAP domain. PH
domains have diverse functions, but in general are
involved in targeting proteins to the appropriate
cellular location or in the interaction with a binding
partner. They share little sequence conservation, but
all have a common fold, which is electrostatically
polarized. Less than 10% of PH domains bind
phosphoinositide phosphates (PIPs) with high affinity
and specificity. PH domains are distinguished from other
PIP-binding domains by their specific high-affinity
binding to PIPs with two vicinal phosphate groups:
PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which
results in targeting some PH domain proteins to the
plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 107
Score = 28.6 bits (64), Expect = 1.9
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 320 SHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLHQICPPGQFTLDF 368
SHF EA+ + I + + G IR + RL +I P + L F
Sbjct: 52 SHFRFVQEAEETLLIDIAINSGCKIRVQGDWTDERLFEI-PDEEHCLTF 99
>gnl|CDD|227360 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
structure and dynamics].
Length = 395
Score = 29.7 bits (67), Expect = 2.5
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 183 KKRKEDGKQN---YMKNSKANATGNISDGNHNSSSQSREPCMERHPNNPLPEP 232
KK+ E GK+ + + N+ S S RE R + + P
Sbjct: 69 KKQTEKGKKEKKPKVSDRMDLDNENVQLEMLYSISNEREIRQLRFGGSKVQNP 121
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator
protein [GAP] for Rho-like small GTPases) domain of
FAM13A1, isoform a-like proteins. The function of
FAM13A1a is unknown. Small GTPases cluster into distinct
families, and all act as molecular switches, active in
their GTP-bound form but inactive when GDP-bound. The
Rho family of GTPases activates effectors involved in a
wide variety of developmental processes, including
regulation of cytoskeleton formation, cell proliferation
and the JNK signaling pathway. GTPases generally have a
low intrinsic GTPase hydrolytic activity but there are
family-specific groups of GAPs that enhance the rate of
GTP hydrolysis by up several orders of magnitude.
Length = 189
Score = 28.2 bits (63), Expect = 6.6
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 32 YLGPDVFFDNPRRSASQRLAQALPPYTSNSLSFSFVSLSQLESLYYYVLRNA-NPALVVQ 90
Y G D F R L Q LPP + L F LS + S ++ A N A V
Sbjct: 106 YNGEDEFGRKLRD-----LLQQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVFG 160
Query: 91 PSVFHMY 97
P VFH+Y
Sbjct: 161 PDVFHVY 167
>gnl|CDD|234889 PRK01029, tolB, translocation protein TolB; Provisional.
Length = 428
Score = 28.6 bits (64), Expect = 6.7
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 17/79 (21%)
Query: 1 MALQGNNSPSTVSVEKTFNDQHFLLNFIMSTYLGPDVFFD----------NPRRSASQRL 50
+ALQGN + TF+ + LL FI Y PD+F PRR ++
Sbjct: 227 LALQGNQ------LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF 280
Query: 51 A-QALPPYTSNSLSFSFVS 68
Q P ++ + FVS
Sbjct: 281 GTQGNPSFSPDGTRLVFVS 299
>gnl|CDD|236802 PRK10942, PRK10942, serine endoprotease; Provisional.
Length = 473
Score = 28.6 bits (64), Expect = 6.8
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 50 LAQALPPYT-SNSLSFSFVSLSQLESLYYYVLRNANPAL-VVQPSVFHMYLKGIMPLPSS 107
L AL P + + + + S + Q+ SL P L V PSV + ++G + +
Sbjct: 14 LGLALSPLSATAAETSSATTAQQMPSL--------APMLEKVMPSVVSINVEGSTTVNTP 65
Query: 108 ELPKDCQQF 116
+P+ QQF
Sbjct: 66 RMPRQFQQF 74
>gnl|CDD|235775 PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.
Length = 565
Score = 28.2 bits (64), Expect = 8.9
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 138 KGI-VLIDDPDTSFIKKEDLVRFRSLSGMDDLKI-DKIK-------------SLCY-EHE 181
KG V ++D I+ +L R R + LK+ D+++ SL +
Sbjct: 474 KGAFVELEDGVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRISLSIKALD 533
Query: 182 YKKRKEDGKQNYMKNSKANAT-GNI 205
+ KE + Y S + T G++
Sbjct: 534 EAEEKEAIAE-YNSASDSKTTLGDL 557
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,266,155
Number of extensions: 1947361
Number of successful extensions: 1474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1473
Number of HSP's successfully gapped: 16
Length of query: 397
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 298
Effective length of database: 6,546,556
Effective search space: 1950873688
Effective search space used: 1950873688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)