RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 039702
(397 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 7e-06
Identities = 55/342 (16%), Positives = 105/342 (30%), Gaps = 110/342 (32%)
Query: 22 HFLLNFIMSTYLG--PDVFFDNPRRSA--SQRLAQALPPYTSNSLSFSFVSLSQ--LESL 75
H++ + + LG P + + SQ L A+ ++S SF + + L
Sbjct: 248 HYV---VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE-SFFVSVRKAITVL 303
Query: 76 YYYVLR--NANPALVVQPSVFHMYLKGIMPLPS----------SELPKDCQQFTSFFPLN 123
++ +R A P + PS+ L+ +PS ++ + S P
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 124 IHGHKRYSGCYEIVKGIVLIDDPDTSFIKKEDLVRFRSLSGMDDLKIDKIKSLCYEHEYK 183
I L++ + + +SG +SL
Sbjct: 364 KQVE------------ISLVNGAK-NLV----------VSG-------PPQSLY------ 387
Query: 184 KRKEDGKQNYMKNSKANATGNISDGNHNSSSQSREPCMERHPNNPLPEPALSH---PVSV 240
G ++ +KA + + QSR P ER + S+ PV+
Sbjct: 388 -----GLNLTLRKAKAPSGLD----------QSRIPFSER-------KLKFSNRFLPVAS 425
Query: 241 SNH-HILQGAFQKNCNRDGPAMMPL----LTVP-----NGKECMSDASVTLTGTATKGMV 290
H H+L A + + +P +G + + S +++ ++
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRVLSGSISERIVDCII 484
Query: 291 GPPIG-----------VVDIG---ISKLAYFFQAALPG--VR 316
P+ ++D G S L G VR
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR 526
Score = 42.7 bits (100), Expect = 2e-04
Identities = 46/281 (16%), Positives = 82/281 (29%), Gaps = 122/281 (43%)
Query: 4 QG-----------NNSPSTVSVEKTFN--DQHFLLNFIMSTYLGPDVFFDNPRRSA---- 46
QG S + + +N D HF + S D+ +NP
Sbjct: 1624 QGSQEQGMGMDLYKTSKA---AQDVWNRADNHFKDTYGFSI---LDIVINNPVNLTIHFG 1677
Query: 47 ---SQRLAQALPPYTSNSLSFS-------FVSLSQLESLYYY-----VL---RNANPAL- 87
+R+ + ++ F +++ + Y + +L + PAL
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 88 VVQPSVFHMYLK--GIMPLPSSELPKDCQQFTSFFPLNIHGHKRYS-GCYEI-----VKG 139
+++ + F LK G++P + F GH S G E +
Sbjct: 1738 LMEKAAFED-LKSKGLIPADA------------TFA----GH---SLG--EYAALASLAD 1775
Query: 140 IVLIDDPDTSFIKKED---LVRFRSLSGMDDLKIDKIKSLCYEHEYKKRKEDGKQNY-M- 194
V+ S E +V +R GM R E G+ NY M
Sbjct: 1776 -VM------SI---ESLVEVVFYR---GM------------TMQVAVPRDELGRSNYGMI 1810
Query: 195 --KNSKANATGN----------ISDG--------NHNSSSQ 215
+ A+ + + N+N +Q
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.003
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 68 SLSQLE-SLYYYVLRNANPALVVQPSV 93
+L +L+ SL Y +A PAL ++ ++
Sbjct: 21 ALKKLQASLKLYADDSA-PALAIKATM 46
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 36.3 bits (84), Expect = 0.005
Identities = 17/131 (12%), Positives = 28/131 (21%), Gaps = 28/131 (21%)
Query: 255 NRDGPAMMPLLTVPNGKECMSDASVTLTGTATKGMVGPPIGVVDIGISKLAYFFQAALPG 314
+ + ++ G G P + I A LPG
Sbjct: 20 ATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMP---ISIIEGDQHIKVIAWLPG 76
Query: 315 VRRDYSHFSCEIE---ADGKVHIRGS------TSGGKTIRKRSRVFRMRLHQICPPGQFT 365
V ++ +I + IR T + I +
Sbjct: 77 VNKE------DIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEE----------EEIY 120
Query: 366 LDFSLPGPVDP 376
LP V
Sbjct: 121 RTIKLPATVKE 131
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 35.7 bits (83), Expect = 0.006
Identities = 14/94 (14%), Positives = 22/94 (23%), Gaps = 20/94 (21%)
Query: 286 TKGMVGPPIGVVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRG---STSGGK 342
+V PP VD+ A L G ++ + ++ I T G
Sbjct: 19 FYELVYPP---VDMYEEGGYLVVVADLAGFNKE--KIKARVSGQNELIIEAEREITEPGV 73
Query: 343 TIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDP 376
+ LP V
Sbjct: 74 KYLTQRP------------KYVRKVIRLPYNVAK 95
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 30.9 bits (71), Expect = 0.15
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 297 VDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGGKTIRKRSRVFRMRLH 356
VDI + A LPG+ +++ G + IRG + R +
Sbjct: 7 VDIKEEVNHFVLYADLPGIDPS--QIEVQMD-KGILSIRGERKSESSTETERFSRIERRY 63
Query: 357 QICPPGQFTLDFSLPGPVDP 376
G F F+LP D
Sbjct: 64 -----GSFHRRFALPDSADA 78
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 32.1 bits (74), Expect = 0.31
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 134 YEIVKGIVLIDDPDTSFIKKEDLVRFRSLSGM 165
Y++ +G +L+D D IK+ L RS G+
Sbjct: 405 YDVDRGQILVDGIDIRKIKRSSL---RSSIGI 433
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide;
DNA-dependent RNA polymerase, cellular RNA polymerase;
4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5
d.230.1.1
Length = 215
Score = 31.6 bits (71), Expect = 0.33
Identities = 11/108 (10%), Positives = 33/108 (30%), Gaps = 9/108 (8%)
Query: 118 SFFPLNIHGHKRYSGCYEIVKGIVLIDDPDTSFIKKEDLVRFR---------SLSGMDDL 168
+ + H I + +R + S+ + +
Sbjct: 104 GPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAIGSI 163
Query: 169 KIDKIKSLCYEHEYKKRKEDGKQNYMKNSKANATGNISDGNHNSSSQS 216
K D + ++ +E K+ + K +++G + ++S++
Sbjct: 164 KEDYLGAISHEKRRWKKNFIAVSAANRFKKISSSGALDYDIPTTASEN 211
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 30.0 bits (68), Expect = 0.71
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 278 SVTLTGTATKGMVGPPIGVVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGS 337
+++ G+ T +D + A+ F+A LPGV+++ E+E + + G
Sbjct: 30 AISGGGSETAAFANAR---MDWKETPEAHVFKADLPGVKKE--EVKVEVEDGNVLVVSGE 84
Query: 338 TSGGKTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDP 376
+ K + R G+F F L
Sbjct: 85 RTKEKEDKNDKWHRVERSS-----GKFVRRFRLLEDAKV 118
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 30.7 bits (69), Expect = 0.86
Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 38/187 (20%)
Query: 75 LYYYVLRNANPALVV---QPSVFHM------------YLKGIMPLPS-SELPKDCQQFTS 118
LY V+ NP Q + + G +PLPS E+ D +
Sbjct: 298 LYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWRE 357
Query: 119 FFPLNIHGHKRYSGCYEIVKGIVLIDDPDTSFIKKEDLVRFRSLSGMDDLKIDKIKSLCY 178
+ + Y +I+ ++ I
Sbjct: 358 KELTLVTAEEMY--------------TYQGDYIQ-----NLIDMTDYPSFDIPATNKTFL 398
Query: 179 EHEYKKRKEDGKQNYMKNSKANA-TGNISDGNHNSSSQSREPCMERHPNNPLPEPALSHP 237
E +K K++ + +S + TG ++ +H + + +E + ++ P
Sbjct: 399 E--WKHHKKENIMTFRDHSYRSLMTGTMAPKHHTPWIDALDDSLEAYLSDKSEIPVAKEA 456
Query: 238 VSVSNHH 244
+ +HH
Sbjct: 457 LEHHHHH 463
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 27.8 bits (62), Expect = 1.9
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 21/97 (21%)
Query: 295 GVVDIGISKLAYFFQAALPGVRRDYSHFSCEIE---ADGKVHIRGSTSGGKTIRKRSRVF 351
+ + + + + EI V + R F
Sbjct: 2 AMAQVPTDPGYFSVLLDVKHFSPE------EISVKVVGDHVEV----HARHEERPDEHGF 51
Query: 352 RMRLHQICPPGQFTLDFSLPGPVDPRLFSPHFRCDGI 388
R +F + LP VDP + +G+
Sbjct: 52 IAR--------EFHRRYRLPPGVDPAAVTSALSPEGV 80
>3laq_U UPAR, U-PAR, urokinase plasminogen activator surface receptor; ATF,
supar, smupar, MATF, disulfide bond, EGF-LIK hydrolase,
kringle; HET: NAG; 3.20A {Mus musculus}
Length = 277
Score = 29.2 bits (64), Expect = 2.1
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 232 PALSHPVSVSNHHILQGAFQKNCNRD----GPAMMPLLTVPNGKECMS 275
P + H F K CN GP + PNG +C S
Sbjct: 147 SLPGCPGTAGFHSNQTFHFLKCCNYTHCNGGPVLDLQSFPPNGFQCYS 194
>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related,
transferase; 2.00A {Saccharomyces cerevisiae} PDB:
2if8_A*
Length = 363
Score = 29.1 bits (64), Expect = 2.4
Identities = 17/126 (13%), Positives = 41/126 (32%), Gaps = 2/126 (1%)
Query: 69 LSQLESLYYYVLRNANPALVVQPSVFHMYLKGIMPLPSSELPKDCQQFTSFFPLNIHGHK 128
E +Y ++ + + + L MP L + + S + +
Sbjct: 33 AFPQELEFYKAIQVRDVSRRKSSADGDAPLCSWMPTYLGVLNEGAKIEQSGDAALLKIDE 92
Query: 129 RYSGCYEIVKGIVLIDDPDTSFIKKEDLV-RFRSLSGMDDLKIDKIKSLCYEHEYKKRKE 187
R S + + I + + ++ E+L+ F + + D+K+ K K+ +
Sbjct: 93 RLSDSTDNLDSIPVKSEKSKQYLVLENLLYGFSKPNIL-DIKLGKTLYDSKASLEKRERM 151
Query: 188 DGKQNY 193
Sbjct: 152 KRVSET 157
>1m1f_A KID toxin protein; toxin-antitoxin, plasmid maintenance, post
segregational killing, DNA replication, mutational
analysis, CCDB; 1.40A {Escherichia coli} SCOP: b.34.6.2
PDB: 2c06_A
Length = 110
Score = 27.8 bits (62), Expect = 2.4
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 85 PALVVQPSVFHMYLKGIMPLPSSELPKDCQQFTSFFPLNIHGHKRYS 131
P L+V P+ F+ + + +P + + L+ G +
Sbjct: 24 PVLIVTPAAFNRVTRLPVVVPVTSGGNFARTAGFAVSLDGVGIRTTG 70
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding,
kinetoch replication-replication complex; 3.05A
{Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Length = 190
Score = 28.5 bits (63), Expect = 3.1
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 22 HFLLNFIMSTYLGPDV----FFDNPRRSASQRLAQALPPYTSNSLSFSFVSLSQ 71
+ L F+ +V L LP Y +LSF SL+Q
Sbjct: 117 DYKLGFVKGQAQVTEVIYAPVLKQRSTEELYSLQSKLPEYLFETLSFPLSSLNQ 170
>4ef4_A Transmembrane protein 173; sting/MITA/ERIS/MPYS/TMEM173, innate
immune system, type I interferon, dimerization,
C-DI-GMP; HET: C2E; 2.15A {Homo sapiens} PDB: 4ef5_A
Length = 265
Score = 28.5 bits (63), Expect = 3.5
Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 19/142 (13%)
Query: 58 TSNSLSFSFVSLSQLESLYYYVLRNANPALVVQPSVFHMYLKGIMPLPSSELPKDCQQFT 117
+ +L F +L+ E N N A + S + YL+ I+P EL + +
Sbjct: 14 GTENLYFQSNALAPAEISAVCEKGNFNVAHGLAWSYYIGYLRLILP----ELQARIRTYN 69
Query: 118 SFFPLNIHGHKRYSGCYEIVKGIVLIDDPDTSFIK---KEDLVRFRSLSGMDDLKIDK-- 172
+ + +L+ P + R L + D
Sbjct: 70 QH-------YNNLLRGAVSQRLYILL--PLDCGVPDNLSMADPNIRFLDKLPQQTGDHAG 120
Query: 173 IKSLCYEHE-YKKRKEDGKQNY 193
IK Y + Y+ + +
Sbjct: 121 IKDRVYSNSIYELLENGQRAGT 142
>3n4s_A Monopolin complex subunit CSM1; meiosis, rDNA, replication; HET:
1PE; 2.35A {Saccharomyces cerevisiae} PDB: 3n4r_A*
Length = 116
Score = 27.6 bits (61), Expect = 3.7
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 22 HFLLNFIMSTYLGPDV----FFDNPRRSASQRLAQALPPYTSNSLSFSFVSLSQ 71
+ L F+ +V L LP Y +LSF SL+Q
Sbjct: 52 DYKLGFVKGQAQVTEVIYAPVLKQRSTEELYSLQSKLPEYLFETLSFPLSSLNQ 105
>1ywh_A Urokinase plasminogen activator surface receptor; UPAR,
three-finger fold, protein-peptide complex, hydrolase;
HET: ALC NAG FUC NDG BMA MAN; 2.70A {Homo sapiens} SCOP:
g.7.1.3 g.7.1.3 g.7.1.3
Length = 313
Score = 28.4 bits (62), Expect = 4.8
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 237 PVSVSNHHILQGAFQKNCNRD----GPAMMPLLTVPNGKECMS 275
P S H+ F K CN GP + NG++C S
Sbjct: 154 PGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYS 196
>2l26_A Uncharacterized protein RV0899/MT0922; out membrane protein,
membrane protein; NMR {Mycobacterium tuberculosis}
Length = 284
Score = 27.7 bits (61), Expect = 6.7
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 248 GAFQKNCNRDGPAMMPLLTVPNGKECMSDASVTLTGTATKGMVGPPIG 295
+ + P + +P+ + +VTLTGTA +
Sbjct: 79 VVRSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVK 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,129,771
Number of extensions: 364703
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 617
Number of HSP's successfully gapped: 22
Length of query: 397
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 301
Effective length of database: 4,021,377
Effective search space: 1210434477
Effective search space used: 1210434477
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)