RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 039702
         (397 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 11/116 (9%)

Query: 282 TGTATKGMVGPPIGVVDIGISKLAYFFQAALPGVRRDYSHFSCEIEADGKVHIRGSTSGG 341
           TG    G    P   + I          A LPGV ++       + A G      +    
Sbjct: 1   TGIQISGKGFMP---ISIIEGDQHIKVIAWLPGVNKE----DIILNAVGDTLEIRAKRSP 53

Query: 342 KTIRKRSRVFRMRLHQICPPGQFTLDFSLPGPVDPRLFSPHFRCDGIFEAVVIKQK 397
             I +  R+      +I    +      LP  V     S  F  +G+   ++ K +
Sbjct: 54  LMITESERIIY---SEIPEEEEIYRTIKLPATVKEENASAKFE-NGVLSVILPKAE 105


>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
           221, C-terminal domain {Trypanosoma brucei brucei
           [TaxId: 5702]}
          Length = 80

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 181 EYKKRKEDGKQNYMKNSKANATGN 204
           E  K+  D      K    N TG+
Sbjct: 56  EEAKKVADETAKDGKTGNTNTTGS 79


>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus
           cinereus) [TaxId: 5346]}
          Length = 131

 Score = 26.5 bits (58), Expect = 3.1
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 356 HQICPPGQFTLDFSLPGPVDPRLFSPHF---RCDGIFEAVVI 394
             I P   F   F+  G      +  HF    CDG+   +VI
Sbjct: 85  CPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVI 126


>d1ne8a_ b.34.6.2 (A:) PemK-like protein YdcE {Bacillus subtilis
           [TaxId: 1423]}
          Length = 116

 Score = 26.2 bits (57), Expect = 4.2
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 10/89 (11%)

Query: 85  PALVVQPSVFHMYLKGIMPLPSSELPKDCQQFTSFFPLNIHGHKRYSGCYEIVKGIVLID 144
           P LV+Q  + + +    +    +      Q   +  P ++    +  G       ++L++
Sbjct: 26  PVLVIQNDIGNRFSPTAIVAAITA-----QIQKAKLPTHVEIDAKRYGFE--RDSVILLE 78

Query: 145 DPDTSFIKKEDLVRFR-SLSGMDDLKIDK 172
              T  I K+ L      L      K+D+
Sbjct: 79  QIRT--IDKQRLTDKITHLDDEMMDKVDE 105


>d1v10a1 b.6.1.3 (A:1-136) Laccase {Rigidoporus lignosus [TaxId:
           219653]}
          Length = 136

 Score = 25.8 bits (56), Expect = 5.4
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 350 VFRMRLHQICPPGQFTLDFSLPGPVDPRLFSPHF---RCDGIFEAVVIKQK 397
              +    I P   F  DF +PG      +  H     CDG+  A V+   
Sbjct: 79  PAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDP 129


>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine
           sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId:
           485]}
          Length = 144

 Score = 25.4 bits (55), Expect = 8.6
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 7/41 (17%)

Query: 37  VFFDNPRRSASQRLAQALPPYTSNSLSFSFVSLSQLESLYY 77
           VF D PR     R       Y  N  S  F+ L Q+++  Y
Sbjct: 104 VFPDGPRDKGGLR-------YCINGASLKFIPLEQMDAAGY 137


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,516,912
Number of extensions: 72235
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 7
Length of query: 397
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 310
Effective length of database: 1,213,086
Effective search space: 376056660
Effective search space used: 376056660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)