BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039703
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92383|MAG1_SCHPO DNA-3-methyladenine glycosylase 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mag1 PE=1 SV=1
Length = 228
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 7/199 (3%)
Query: 68 EVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFV 127
+ +I L L + L L+ +RP + P+ L +++ QQL KAA +I+ RF
Sbjct: 17 KAEIHLSGLDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRFK 76
Query: 128 ALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGIL-SDESIVEMDDVT 186
++ N P+ + + + +R G S RK L+ +AE G++ + E + +
Sbjct: 77 SISNNGQFPTPEEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLIPTKEEAERLSNEE 136
Query: 187 MFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPG---ALKME 243
+ + LT +KGIG W+V M +IFSL++ DV+P DL +R G + L+ L ++P LK
Sbjct: 137 LIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPKIPTKMYVLKHS 196
Query: 244 EVCEKWKPYRSVGSWYMWR 262
E+C P+R+ +WY+W+
Sbjct: 197 EIC---APFRTAAAWYLWK 212
>sp|O31544|YFJP_BACSU Putative DNA-3-methyladenine glycosylase YfjP OS=Bacillus subtilis
(strain 168) GN=yfjP PE=3 SV=1
Length = 287
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 5/188 (2%)
Query: 83 LATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNIL----- 137
L+ + + H S + + K I++QQL A ++ RFV F + + +
Sbjct: 100 LSAIFEEHAGTPLVLDYSVYNCMMKCIIHQQLNLSFAYTLTERFVHAFGEQKDGVWCYPK 159
Query: 138 PDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGI 197
P+ + + Q LR++ S RKA Y D + +G LS + M D + K L ++GI
Sbjct: 160 PETIAELDYQDLRDLQFSMRKAEYTIDTSRMIAEGTLSLSELPHMADEDIMKKLIKIRGI 219
Query: 198 GAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGS 257
G W+V ++F L +P++ P+ D+G++ ++ + L + P M + ++W+PY S S
Sbjct: 220 GPWTVQNVLMFGLGRPNLFPLADIGLQNAIKRHFQLDDKPAKDVMLAMSKEWEPYLSYAS 279
Query: 258 WYMWRLME 265
Y+WR +E
Sbjct: 280 LYLWRSIE 287
>sp|O94468|MAG2_SCHPO Probable DNA-3-methyladenine glycosylase 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mag2 PE=1 SV=1
Length = 213
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 100/196 (51%), Gaps = 4/196 (2%)
Query: 72 ALRHLRDKDPLLATLIDAHRPPTF--ESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVAL 129
A +HL D ++L+ P T +P+ + ++I Q+L+ A SI +F
Sbjct: 10 AEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQ 69
Query: 130 FNGEDNI-LPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVE-MDDVTM 187
+ D P ++ + L E G S K+ + +AE + + +S +E M + +
Sbjct: 70 CSDNDEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEEL 129
Query: 188 FKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCE 247
+ L+ +KG+ W++ M+ IF+L + D++P D ++ + +GL P ++E++ +
Sbjct: 130 MESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKLTK 189
Query: 248 KWKPYRSVGSWYMWRL 263
KPYR++ +WY+W++
Sbjct: 190 PCKPYRTIAAWYLWQI 205
>sp|P22134|MAG_YEAST DNA-3-methyladenine glycosylase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MAG1 PE=1 SV=1
Length = 296
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 109/240 (45%), Gaps = 52/240 (21%)
Query: 70 DIALRHLRDKDPLLATLI----------DAHRPPTFESSRSPFLSLAKSILYQQLAYKAA 119
++A H+ +KDP L ++ + P T E F+ LA +IL QQ++ +AA
Sbjct: 45 NMACEHILEKDPSLFPILKNNEFTLYLKETQVPNTLEDY---FIRLASTILSQQISGQAA 101
Query: 120 KSIYTRFVALFNGEDNILPDAVLAVS----PQQLREI---GVSYRKASYLRDLAEKYTDG 172
+SI R V+L+ G PD + P + EI G+S RK YL LA +T+
Sbjct: 102 ESIKARVVSLYGG---AFPDYKILFEDFKDPAKCAEIAKCGLSKRKMIYLESLAVYFTEK 158
Query: 173 ILSDESIV---EMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGL-Q 228
E + + D+ + ++T+VKGIG WS MF+I L + DV DLG+ +G +
Sbjct: 159 YKDIEKLFGQKDNDEEVIESLVTNVKGIGPWSAKMFLISGLKRMDVFAPEDLGIARGFSK 218
Query: 229 VLYGLKELPGALK-------------------------MEEVCEKWKPYRSVGSWYMWRL 263
L EL L ME+ E + PYRSV + +WRL
Sbjct: 219 YLSDKPELEKELMRERKVVKKSKIKHKKYNWKIYDDDIMEKCSETFSPYRSVFMFILWRL 278
>sp|P37878|3MGA_BACSU DNA-3-methyladenine glycosylase OS=Bacillus subtilis (strain 168)
GN=alkA PE=1 SV=1
Length = 303
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 89/172 (51%), Gaps = 9/172 (5%)
Query: 102 FLSLAKSILYQQLAYKAAKSIYTRFVALF------NGEDN-ILP--DAVLAVSPQQLREI 152
F +L +L QQ+ A S+ +FV F NG+ + P + + ++P L +I
Sbjct: 131 FEALCWGVLGQQINLAFAYSLKKQFVEAFGDSIEWNGKKYWVFPPYERIARLTPTDLADI 190
Query: 153 GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHK 212
++ +K+ Y+ +A G LS E +++M+ K L ++GIG W+ + ++ L
Sbjct: 191 KMTVKKSEYIIGIARLMASGELSREKLMKMNFKDAEKNLIKIRGIGPWTANYVLMRCLRF 250
Query: 213 PDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLM 264
P P+ D+G+ +++L + P ++ E+ WK ++S ++Y+WR++
Sbjct: 251 PTAFPIDDVGLIHSIKILRNMNRKPTKDEILEISVPWKEWQSYATFYLWRVL 302
>sp|Q10630|ALKA_MYCTU Probable bifunctional transcriptional activator/DNA repair enzyme
AlkA OS=Mycobacterium tuberculosis GN=alkA PE=3 SV=1
Length = 496
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 8/164 (4%)
Query: 107 KSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSP--QQLREIGVSYRKASYLRD 164
+++L QQ++ KAA + R VA + + A+ P +QL EI + R
Sbjct: 323 RAVLAQQVSTKAASTHAGRLVAAYGRPVHDRHGALTHTFPSIEQLAEIDPGHLAVPKARQ 382
Query: 165 LAEKYTDGILSDESIV---EMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDL 221
L+D+S+V D L ++ G+G W+ + + L PD P DL
Sbjct: 383 RTINALVASLADKSLVLDAGCDWQRARGQLLALPGVGPWTAEVIAMRGLGDPDAFPASDL 442
Query: 222 GVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLME 265
G+R + L GL AL + +W+P+RS + ++W +E
Sbjct: 443 GLRLAAKKL-GLPAQRRALTVHSA--RWRPWRSYATQHLWTTLE 483
>sp|P04395|3MG2_ECOLI DNA-3-methyladenine glycosylase 2 OS=Escherichia coli (strain K12)
GN=alkA PE=1 SV=1
Length = 282
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 21/165 (12%)
Query: 107 KSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVL--------AVSPQQLREIGVSYRK 158
++IL Q ++ A + R L+ + P+ + A PQ L+ +G+ ++
Sbjct: 119 RAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKR 178
Query: 159 ASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPV 218
A L LA +G L + D K L + GIG W+ + F + DV
Sbjct: 179 AEALIHLANAALEGTLP--MTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLP 236
Query: 219 GDLGVRKGLQVLYGLKELPGAL--KMEEVCEKWKPYRSVGSWYMW 261
D +++ PG ++ E+WKP+RS ++W
Sbjct: 237 DDYLIKQ---------RFPGMTPAQIRRYAERWKPWRSYALLHIW 272
>sp|P29588|GTMR_METTF G/T mismatches repair enzyme OS=Methanobacterium thermoformicicum
PE=1 SV=1
Length = 221
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 95 FESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNIL--PDAVLAVSPQQLREI 152
+ +R P++ L IL ++ K IY +F + ++IL P + +A + ++EI
Sbjct: 29 WRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIA---KDIKEI 85
Query: 153 GVSYRKASYLRDLAE 167
G+S ++A L++LA
Sbjct: 86 GLSNQRAEQLKELAR 100
>sp|P61342|GATB_CORDI Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Corynebacterium diphtheriae (strain ATCC 700971 /
NCTC 13129 / Biotype gravis) GN=gatB PE=3 SV=1
Length = 501
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 119 AKSIYTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDES 178
A+S + +++ E + D+ L+++PQQ+ + ++ LA + DG+L+ E
Sbjct: 368 ARSWWVAYLSQKANESGVELDS-LSITPQQVARVAALVKEGKLTNKLARQAVDGVLAGEG 426
Query: 179 IVEMDDVTMFKMLTSVKGIGA 199
++D+V + L V+ GA
Sbjct: 427 --DVDEVVAARGLEVVRDDGA 445
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,665,828
Number of Sequences: 539616
Number of extensions: 4075597
Number of successful extensions: 10527
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 10514
Number of HSP's gapped (non-prelim): 13
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)