Query 039703
Match_columns 284
No_of_seqs 176 out of 1520
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 21:29:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b21_A Probable DNA-3-methylad 100.0 1.2E-52 4E-57 377.4 24.6 207 61-267 18-228 (232)
2 3s6i_A DNA-3-methyladenine gly 100.0 7.9E-50 2.7E-54 358.1 23.7 202 66-268 12-218 (228)
3 3i0w_A 8-oxoguanine-DNA-glycos 100.0 5.2E-48 1.8E-52 357.5 22.7 208 55-267 71-288 (290)
4 2yg9_A DNA-3-methyladenine gly 100.0 5E-48 1.7E-52 345.8 21.6 195 62-265 21-216 (225)
5 2jhn_A ALKA, 3-methyladenine D 100.0 8.5E-47 2.9E-51 350.0 19.6 202 57-266 74-287 (295)
6 2h56_A DNA-3-methyladenine gly 100.0 4.2E-45 1.4E-49 328.3 22.0 199 60-262 13-211 (233)
7 2xhi_A N-glycosylase/DNA lyase 100.0 1.1E-43 3.7E-48 337.4 22.5 208 56-266 108-339 (360)
8 1mpg_A ALKA, 3-methyladenine D 100.0 1.2E-42 4.1E-47 320.1 19.2 196 56-267 75-278 (282)
9 1orn_A Endonuclease III; DNA r 100.0 6.2E-31 2.1E-35 235.1 20.1 170 81-264 12-186 (226)
10 2abk_A Endonuclease III; DNA-r 100.0 2.1E-31 7.2E-36 235.6 13.2 167 81-262 8-179 (211)
11 1kea_A Possible G-T mismatches 100.0 1.3E-30 4.6E-35 232.1 17.6 168 83-264 16-191 (221)
12 1kg2_A A/G-specific adenine gl 100.0 7.7E-30 2.6E-34 227.7 15.3 165 82-261 9-183 (225)
13 1pu6_A 3-methyladenine DNA gly 100.0 1.5E-29 5.3E-34 224.9 13.7 142 95-248 24-176 (218)
14 3fhg_A Mjogg, N-glycosylase/DN 100.0 1.5E-28 5.1E-33 216.9 13.6 170 82-264 14-201 (207)
15 3n0u_A Probable N-glycosylase/ 99.9 9.8E-28 3.3E-32 213.6 13.8 167 81-264 29-213 (219)
16 3fsp_A A/G-specific adenine gl 99.9 1.5E-25 5.1E-30 213.0 19.1 149 91-257 29-188 (369)
17 3n5n_X A/G-specific adenine DN 99.9 1.7E-25 5.8E-30 206.3 17.1 178 60-259 6-201 (287)
18 3fhf_A Mjogg, N-glycosylase/DN 99.9 1.1E-25 3.9E-30 199.5 14.2 161 86-263 29-207 (214)
19 4e9f_A Methyl-CPG-binding doma 99.9 1.1E-22 3.8E-27 173.0 12.7 118 98-235 28-150 (161)
20 4glx_A DNA ligase; inhibitor, 93.3 0.21 7.2E-06 49.8 8.4 95 122-232 458-578 (586)
21 2fmp_A DNA polymerase beta; nu 92.8 0.14 4.7E-06 47.6 5.7 57 147-206 57-115 (335)
22 1s5l_U Photosystem II 12 kDa e 92.7 0.088 3E-06 42.8 3.7 50 141-207 57-107 (134)
23 3vdp_A Recombination protein R 92.7 0.093 3.2E-06 45.8 4.1 30 184-213 21-50 (212)
24 1vdd_A Recombination protein R 92.1 0.12 4.1E-06 45.5 4.1 30 184-213 7-36 (228)
25 2bcq_A DNA polymerase lambda; 91.6 0.25 8.5E-06 45.9 5.9 55 147-206 57-113 (335)
26 2ihm_A POL MU, DNA polymerase 91.2 0.21 7.1E-06 46.9 5.0 55 149-206 63-119 (360)
27 2ztd_A Holliday junction ATP-d 91.0 0.37 1.3E-05 42.0 6.0 46 153-212 95-146 (212)
28 4gfj_A Topoisomerase V; helix- 90.9 0.11 3.8E-06 50.0 2.8 77 125-206 533-639 (685)
29 3arc_U Photosystem II 12 kDa e 90.8 0.19 6.4E-06 38.6 3.5 52 140-208 19-71 (97)
30 1dgs_A DNA ligase; AMP complex 89.7 0.73 2.5E-05 46.6 7.8 43 175-230 529-571 (667)
31 2ofk_A 3-methyladenine DNA gly 89.3 1.8 6.2E-05 36.8 8.8 127 78-207 8-167 (183)
32 2jg6_A DNA-3-methyladenine gly 88.8 1.8 6.3E-05 36.9 8.5 127 78-207 8-167 (186)
33 1ixr_A Holliday junction DNA h 88.5 0.75 2.6E-05 39.3 5.9 43 153-209 79-127 (191)
34 1jms_A Terminal deoxynucleotid 88.4 0.46 1.6E-05 44.9 4.9 56 148-206 81-138 (381)
35 3c1y_A DNA integrity scanning 87.3 0.93 3.2E-05 42.8 6.3 45 121-170 326-371 (377)
36 1cuk_A RUVA protein; DNA repai 87.1 1.1 3.7E-05 38.6 6.1 21 188-208 107-127 (203)
37 2owo_A DNA ligase; protein-DNA 86.9 1.8 6.1E-05 43.9 8.4 43 175-230 534-576 (671)
38 2edu_A Kinesin-like protein KI 86.8 1.6 5.6E-05 32.8 6.4 58 139-209 32-90 (98)
39 3b0x_A DNA polymerase beta fam 85.3 1.9 6.4E-05 42.6 7.6 65 139-207 45-111 (575)
40 1x2i_A HEF helicase/nuclease; 85.1 0.73 2.5E-05 32.3 3.4 45 153-208 21-65 (75)
41 2w9m_A Polymerase X; SAXS, DNA 84.6 0.67 2.3E-05 45.9 4.0 52 153-208 64-116 (578)
42 2duy_A Competence protein come 83.4 0.67 2.3E-05 33.1 2.6 22 187-208 25-46 (75)
43 2duy_A Competence protein come 83.2 1.1 3.6E-05 32.0 3.6 51 139-206 19-70 (75)
44 1z00_A DNA excision repair pro 83.0 1.4 4.9E-05 32.3 4.4 46 153-209 26-71 (89)
45 2ztd_A Holliday junction ATP-d 82.1 0.89 3E-05 39.6 3.3 25 183-207 82-106 (212)
46 1x2i_A HEF helicase/nuclease; 80.7 3.3 0.00011 28.8 5.5 40 122-166 26-66 (75)
47 2a1j_A DNA repair endonuclease 80.6 0.99 3.4E-05 31.5 2.5 25 188-213 3-27 (63)
48 1kft_A UVRC, excinuclease ABC 80.0 1.1 3.7E-05 32.2 2.7 45 153-208 31-75 (78)
49 1z00_B DNA repair endonuclease 79.9 1.4 4.7E-05 32.7 3.3 29 184-213 13-41 (84)
50 1ixr_A Holliday junction DNA h 79.9 1.1 3.7E-05 38.3 3.0 26 183-208 66-91 (191)
51 1wcn_A Transcription elongatio 79.3 4.2 0.00014 28.9 5.6 34 135-168 28-62 (70)
52 2a1j_B DNA excision repair pro 78.8 4.6 0.00016 29.7 6.0 39 123-166 45-84 (91)
53 2a1j_B DNA excision repair pro 78.8 1.6 5.3E-05 32.3 3.3 45 153-208 39-83 (91)
54 1kft_A UVRC, excinuclease ABC 77.7 3.3 0.00011 29.5 4.7 38 123-165 37-75 (78)
55 2a1j_A DNA repair endonuclease 77.2 4 0.00014 28.3 4.8 39 122-166 16-55 (63)
56 4gfj_A Topoisomerase V; helix- 76.7 3.3 0.00011 40.0 5.5 41 123-168 481-521 (685)
57 1z00_A DNA excision repair pro 76.5 5.1 0.00017 29.2 5.6 39 123-166 32-71 (89)
58 1cuk_A RUVA protein; DNA repai 76.2 1.5 5.1E-05 37.8 2.9 24 184-207 68-91 (203)
59 1u9l_A Transcription elongatio 72.7 9.2 0.00031 27.2 5.9 37 135-171 27-64 (70)
60 1z3e_B DNA-directed RNA polyme 72.5 9 0.00031 27.5 5.8 47 150-206 12-58 (73)
61 2bcq_A DNA polymerase lambda; 71.5 11 0.00037 34.7 7.6 43 157-208 34-76 (335)
62 2w9m_A Polymerase X; SAXS, DNA 71.2 1.9 6.7E-05 42.6 2.6 44 153-205 104-147 (578)
63 1b22_A DNA repair protein RAD5 69.5 8.9 0.0003 29.9 5.7 54 145-209 24-78 (114)
64 2csb_A Topoisomerase V, TOP61; 67.6 7.8 0.00027 35.2 5.5 50 163-214 386-435 (519)
65 2edu_A Kinesin-like protein KI 67.5 3.1 0.00011 31.2 2.5 21 188-208 39-59 (98)
66 1s5l_U Photosystem II 12 kDa e 67.2 2.3 7.7E-05 34.5 1.7 21 187-207 61-81 (134)
67 2kp7_A Crossover junction endo 66.8 5.9 0.0002 29.4 3.9 39 159-206 37-75 (87)
68 3arc_U Photosystem II 12 kDa e 66.6 2 6.7E-05 32.8 1.2 21 188-208 25-45 (97)
69 1b22_A DNA repair protein RAD5 66.6 5.2 0.00018 31.2 3.8 46 122-171 37-83 (114)
70 2i5h_A Hypothetical protein AF 64.1 3 0.0001 36.1 2.0 23 187-209 130-152 (205)
71 2bgw_A XPF endonuclease; hydro 63.1 5.6 0.00019 33.9 3.7 45 153-208 169-213 (219)
72 3b0x_A DNA polymerase beta fam 62.6 4.9 0.00017 39.6 3.6 46 153-206 100-145 (575)
73 2fmp_A DNA polymerase beta; nu 61.6 11 0.00037 34.7 5.5 48 152-208 29-76 (335)
74 1z00_B DNA repair endonuclease 61.1 9.7 0.00033 28.0 4.2 38 123-166 31-69 (84)
75 3bzc_A TEX; helix-turn-helix, 60.7 4.7 0.00016 41.5 3.1 54 143-209 504-558 (785)
76 2ihm_A POL MU, DNA polymerase 60.3 9.5 0.00032 35.5 4.9 92 153-259 35-130 (360)
77 1jms_A Terminal deoxynucleotid 58.5 15 0.00051 34.4 5.9 90 155-258 55-148 (381)
78 1ucv_A Ephrin type-A receptor 55.4 29 0.00099 24.8 5.9 21 136-156 32-52 (81)
79 1vq8_Y 50S ribosomal protein L 54.5 2.6 8.9E-05 37.3 0.0 25 187-211 13-37 (241)
80 3r8n_M 30S ribosomal protein S 53.1 14 0.00047 28.9 4.0 44 186-230 13-59 (114)
81 3gfk_B DNA-directed RNA polyme 52.4 24 0.00084 25.7 5.0 53 141-206 13-65 (79)
82 3u5c_S 40S ribosomal protein S 51.6 6.4 0.00022 32.2 1.9 43 187-230 28-73 (146)
83 2bgw_A XPF endonuclease; hydro 50.9 29 0.00098 29.3 6.1 40 121-165 173-213 (219)
84 3iz6_M 40S ribosomal protein S 50.4 9.5 0.00032 31.4 2.8 45 185-230 24-71 (152)
85 3j20_O 30S ribosomal protein S 49.5 9.7 0.00033 31.2 2.7 29 186-214 20-48 (148)
86 3k4g_A DNA-directed RNA polyme 48.1 35 0.0012 25.2 5.4 54 140-206 8-61 (86)
87 1vq8_Y 50S ribosomal protein L 48.0 3.8 0.00013 36.2 0.0 50 148-207 16-66 (241)
88 2xzm_M RPS18E; ribosome, trans 45.1 13 0.00044 30.7 2.8 29 186-214 27-55 (155)
89 3sei_A Caskin-1; SAM domain, p 43.7 47 0.0016 26.7 6.0 71 136-211 34-104 (149)
90 1wcn_A Transcription elongatio 42.9 43 0.0015 23.5 5.0 46 153-209 14-60 (70)
91 3psf_A Transcription elongatio 42.6 15 0.00051 39.0 3.4 45 152-208 723-767 (1030)
92 3psi_A Transcription elongatio 41.3 19 0.00066 38.8 4.1 45 152-208 720-764 (1219)
93 3c1y_A DNA integrity scanning 38.1 21 0.00072 33.5 3.4 37 165-205 327-363 (377)
94 2vqe_M 30S ribosomal protein S 37.6 13 0.00043 29.7 1.5 28 187-214 15-42 (126)
95 2nrt_A Uvrabc system protein C 37.5 38 0.0013 29.4 4.7 36 123-164 181-217 (220)
96 2nrt_A Uvrabc system protein C 34.9 22 0.00075 30.9 2.8 26 187-213 166-191 (220)
97 3c65_A Uvrabc system protein C 32.9 9.2 0.00031 33.4 0.0 37 123-164 186-222 (226)
98 1exn_A 5'-exonuclease, 5'-nucl 32.4 19 0.00065 32.5 2.0 16 192-207 206-221 (290)
99 3lda_A DNA repair protein RAD5 32.2 1.1E+02 0.0037 28.5 7.3 46 122-171 95-141 (400)
100 1coo_A RNA polymerase alpha su 32.1 49 0.0017 25.1 4.0 46 151-206 28-73 (98)
101 2dkz_A Hypothetical protein LO 32.0 29 0.00099 25.7 2.6 46 137-189 11-60 (84)
102 3psf_A Transcription elongatio 29.8 82 0.0028 33.4 6.6 67 140-208 661-736 (1030)
103 2kz3_A Putative uncharacterize 29.8 1E+02 0.0035 22.4 5.3 38 135-172 25-63 (83)
104 1orn_A Endonuclease III; DNA r 29.0 2E+02 0.0068 24.4 8.0 82 117-205 8-93 (226)
105 2i5h_A Hypothetical protein AF 29.0 58 0.002 28.0 4.4 49 143-205 128-185 (205)
106 2b6g_A VTS1P; alpha-helix, pen 28.2 1.8E+02 0.0063 22.6 6.8 20 136-155 71-90 (119)
107 2i1q_A DNA repair and recombin 28.2 2.2E+02 0.0075 24.8 8.4 47 121-171 14-61 (322)
108 3q8k_A Flap endonuclease 1; he 26.7 27 0.00093 32.0 2.0 14 193-206 236-249 (341)
109 1pk1_B Sex COMB on midleg CG94 26.0 81 0.0028 23.1 4.2 35 165-201 36-70 (89)
110 3bqs_A Uncharacterized protein 25.2 95 0.0032 23.0 4.5 43 189-233 4-46 (93)
111 2d3d_A VTS1 protein; RNA bindi 25.2 1.6E+02 0.0056 21.7 5.8 20 136-155 40-59 (88)
112 3sgi_A DNA ligase; HET: DNA AM 25.1 15 0.00052 36.7 0.0 30 175-208 551-580 (615)
113 2ziu_A MUS81 protein; helix-ha 24.9 41 0.0014 30.0 2.9 24 185-208 233-256 (311)
114 3k1r_B Usher syndrome type-1G 24.4 1.7E+02 0.0059 20.4 5.7 20 136-155 26-45 (74)
115 2abk_A Endonuclease III; DNA-r 23.7 2.5E+02 0.0086 23.3 7.6 82 118-204 5-88 (211)
116 2rhf_A DNA helicase RECQ; HRDC 23.1 48 0.0016 23.2 2.4 19 187-205 45-63 (77)
117 2es6_A VTS1P; SAM domain, prot 22.3 1.4E+02 0.0048 22.7 5.0 20 136-155 53-72 (101)
118 1rxw_A Flap structure-specific 21.4 39 0.0013 30.6 2.0 16 192-207 238-253 (336)
119 3h8m_A Ephrin type-A receptor 21.4 2.1E+02 0.0073 20.7 5.8 29 125-156 42-70 (90)
120 3psi_A Transcription elongatio 21.3 1.2E+02 0.004 32.8 5.9 67 140-208 658-733 (1219)
121 2k4p_A Phosphatidylinositol-3, 21.0 1.1E+02 0.0037 22.3 4.0 22 135-156 50-71 (86)
122 3kka_C Ephrin type-A receptor 20.8 2.1E+02 0.0073 20.6 5.6 21 136-156 46-66 (86)
123 2izo_A FEN1, flap structure-sp 20.6 41 0.0014 30.7 2.0 15 193-207 238-252 (346)
124 3ory_A Flap endonuclease 1; hy 20.5 41 0.0014 31.1 2.0 15 193-207 255-269 (363)
125 1v38_A SAM-domain protein sams 20.3 2.1E+02 0.0072 20.0 5.4 22 135-156 36-57 (78)
126 2qkq_A Ephrin type-B receptor 20.1 1.2E+02 0.0041 21.4 4.1 21 135-155 39-59 (83)
No 1
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=100.00 E-value=1.2e-52 Score=377.44 Aligned_cols=207 Identities=24% Similarity=0.492 Sum_probs=194.9
Q ss_pred CCCCCchhHHHHHHHHHhcCchHHHHHHHcCCCCCC--CCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCC-CCC
Q 039703 61 KPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFE--SSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGED-NIL 137 (284)
Q Consensus 61 ~~l~l~~d~~~~~~~l~~~Dp~l~~li~~~~g~r~~--~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~-~p~ 137 (284)
.+|++|.|+++++++|...||.|+.+++++||+|++ ...||||+||++||+||++++++.++++||+++||+.. ||+
T Consensus 18 ~~ldld~d~~~~~~~L~~~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPt 97 (232)
T 4b21_A 18 SHMSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPT 97 (232)
T ss_dssp ---CHHHHHHHHHHHHTTTCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCC
T ss_pred CcCCCccCHHHHHHHHHhhCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCC
Confidence 469999999999999988899999999999998875 35699999999999999999999999999999999754 899
Q ss_pred HHHHhcCCHHHHHhcCCChHHHHHHHHHHHHHHcCCC-ChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcc
Q 039703 138 PDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGIL-SDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVL 216 (284)
Q Consensus 138 Pe~la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~l-~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvf 216 (284)
|++|+++++++|++|||+++|++||+++|+.+.+|.+ +++.|.++++++++++|++|||||+|||+|||+|+|+++|+|
T Consensus 98 pe~la~~~~e~Lr~~Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~f 177 (232)
T 4b21_A 98 PKQIMETDVETLHECGFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIM 177 (232)
T ss_dssp HHHHHTSCHHHHHTTTCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCC
T ss_pred HHHHHcCCHHHHHHcCCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCee
Confidence 9999999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHhCCCCCCCHHHHHHHHHhcCChhHHHHHHHHHhhhhc
Q 039703 217 PVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLMEAK 267 (284)
Q Consensus 217 Pv~D~~v~r~~~rly~~~~~~~~~~~~~~~e~~~Pyrs~a~~yLw~~~~~~ 267 (284)
|++|+||+|+++++|+.+..+++++++++.+.|+||||||++|||++++..
T Consensus 178 pv~D~~v~r~~~rl~~~~~~~~~~~~~~~~e~w~P~rs~A~~yLw~~~~~~ 228 (232)
T 4b21_A 178 PADDSTLKNEAKEFFGLSSKPQTEEVEKLTKPCKPYRTIAAWYLWQIPKLH 228 (232)
T ss_dssp CTTCHHHHHHHHHHTTCSSCCCHHHHHHHTGGGTTCHHHHHHHHHTGGGC-
T ss_pred eCccHHHHHHHHHHhCCCCCCCHHHHHHHHHHccCHHHHHHHHHHHcCccc
Confidence 999999999999999998888999999999999999999999999988753
No 2
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-50 Score=358.13 Aligned_cols=202 Identities=29% Similarity=0.516 Sum_probs=188.5
Q ss_pred chhHHHHHHHHHhcCchHHHHHHHcCCCCCCCC--C-CHHHHHHHHHHhcccCHHHHHHHHHHHHHHh-CCCCCCCHHHH
Q 039703 66 KGEVDIALRHLRDKDPLLATLIDAHRPPTFESS--R-SPFLSLAKSILYQQLAYKAAKSIYTRFVALF-NGEDNILPDAV 141 (284)
Q Consensus 66 ~~d~~~~~~~l~~~Dp~l~~li~~~~g~r~~~~--~-~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~-G~~~~p~Pe~l 141 (284)
+.|+++++++|...||.|+.+++++||++++.. + +|||+||++||+||+|++++.++++|| ++| |...||+|++|
T Consensus 12 ~~~~~~~~~~L~~~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~l 90 (228)
T 3s6i_A 12 VTSLTKAEIHLSGLDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEI 90 (228)
T ss_dssp ----CHHHHHHHTSCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHH
T ss_pred hHHHHHHHHHHHhhChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHH
Confidence 467889999998899999999999999998753 4 999999999999999999999999999 999 44568999999
Q ss_pred hcCCHHHHHhcCCChHHHHHHHHHHHHHHcCCC-ChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccC
Q 039703 142 LAVSPQQLREIGVSYRKASYLRDLAEKYTDGIL-SDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGD 220 (284)
Q Consensus 142 a~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~l-~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D 220 (284)
+++++++|+.|||+++|++||+++|+.+.+|.+ +++.+.+++++++++.|++|||||+|||+|||+|+||++|+||+||
T Consensus 91 a~~~~e~Lr~~G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD 170 (228)
T 3s6i_A 91 RDMDFEIMRACGFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADD 170 (228)
T ss_dssp HHSCHHHHHHHTCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTC
T ss_pred HcCCHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEeccc
Confidence 999999999999999999999999999999999 6899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCCHHHHHHHHHhcCChhHHHHHHHHHhhhhcC
Q 039703 221 LGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLMEAKG 268 (284)
Q Consensus 221 ~~v~r~~~rly~~~~~~~~~~~~~~~e~~~Pyrs~a~~yLw~~~~~~~ 268 (284)
++++|+++++|+.+..+++++++++.+.|+||+|||++|||++++...
T Consensus 171 ~~v~r~~~~~~~~~~~~~~~~~~~~~e~w~P~r~~A~~yLw~~~~~~~ 218 (228)
T 3s6i_A 171 LSIRNGYRYLHRLPKIPTKMYVLKHSEICAPFRTAAAWYLWKTSKLAD 218 (228)
T ss_dssp HHHHHHHHHHTTCSSCCCHHHHHHHHGGGTTCHHHHHHHHHHGGGSTT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHhCcccc
Confidence 999999999999988889999999999999999999999999987654
No 3
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=100.00 E-value=5.2e-48 Score=357.48 Aligned_cols=208 Identities=19% Similarity=0.253 Sum_probs=196.3
Q ss_pred CcccccCCCCCchhHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCC-
Q 039703 55 NSPKIFKPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGE- 133 (284)
Q Consensus 55 ~~p~~~~~l~l~~d~~~~~~~l~~~Dp~l~~li~~~~g~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~- 133 (284)
...+++++|++|.|++++.++|. .||.|+++++.++|+|+++ .+|||+||++||+||+++++|.+++++|+++||++
T Consensus 71 ~~~~~~~~fdLd~d~~~~~~~l~-~Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~ 148 (290)
T 3i0w_A 71 FKNVWSEYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKL 148 (290)
T ss_dssp HHHTHHHHTTTTSCHHHHHHHHT-TSHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHh-hCHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCc
Confidence 45668899999999999999996 8999999999999999976 99999999999999999999999999999999964
Q ss_pred --------CCCCHHHHhcCCHHHHHhcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHH
Q 039703 134 --------DNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMF 205 (284)
Q Consensus 134 --------~~p~Pe~la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~v 205 (284)
.||+|++|+.+++++|++||+++ ||+||+++|+.+.+|.++++.+..++++++++.|++|||||||||+||
T Consensus 149 ~~~g~~~~~fPtpe~la~~~~e~L~~~g~g~-Ra~~I~~~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~i 227 (290)
T 3i0w_A 149 EYKGKIYYAFPTVDKLHEFTEKDFEECTAGF-RAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCI 227 (290)
T ss_dssp EETTEEEECCCCHHHHTTCCHHHHHHTTCGG-GHHHHHHHHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHH
T ss_pred ccCCcccccCCcHHHHHCCCHHHHHHcCCch-HHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHH
Confidence 38999999999999999999998 699999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCcccccChHHHHHHHHHhCCCCCCCHHHHHHHH-HhcCChhHHHHHHHHHhhhhc
Q 039703 206 MIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVC-EKWKPYRSVGSWYMWRLMEAK 267 (284)
Q Consensus 206 llf~l~r~dvfPv~D~~v~r~~~rly~~~~~~~~~~~~~~~-e~~~Pyrs~a~~yLw~~~~~~ 267 (284)
++|++|++|+||+ |+||+|+++++|+.+ .+++++++++. +.|+||+|||++|||++.+..
T Consensus 228 ll~~lg~pd~fpv-D~~v~r~~~rl~~~~-~~~~~~i~~~~~~~~~p~~~~A~~~Lw~~~R~~ 288 (290)
T 3i0w_A 228 MLFSMQKYSAFPV-DTWVKKAMMSLYVAP-DVSLKKIRDFGREKFGSLSGFAQQYLFYYAREN 288 (290)
T ss_dssp HHHHHCCTTCCCC-CHHHHHHHHHHTSCT-TCCHHHHHHHHHHHHGGGHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCccee-cHHHHHHHHHhcCCC-CCCHHHHHHHHHhhcchHHHHHHHHHHHhhhhh
Confidence 9999999999999 999999999998875 46888999987 999999999999999998865
No 4
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=100.00 E-value=5e-48 Score=345.77 Aligned_cols=195 Identities=31% Similarity=0.555 Sum_probs=185.2
Q ss_pred CCCCchhHHHHHHHHHhcCchHHHHHHHcCCC-CCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHHH
Q 039703 62 PLTFKGEVDIALRHLRDKDPLLATLIDAHRPP-TFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDA 140 (284)
Q Consensus 62 ~l~l~~d~~~~~~~l~~~Dp~l~~li~~~~g~-r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe~ 140 (284)
.+..+.++.++++++...||.|+.+++.+|++ ++....+|||+||++||+||++++++.+++++|+++||. |+|++
T Consensus 21 ~~~~~~~~~~~~~~l~~~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~---ptp~~ 97 (225)
T 2yg9_A 21 AVLPPLTDHAGAVAHLSRDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGG---VVPAA 97 (225)
T ss_dssp CCCCCCSCSHHHHHHHTTSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTC---SCHHH
T ss_pred cCCChhhHHHHHHHHHhcCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCc---CCHHH
Confidence 36667788999999999999999999999998 787889999999999999999999999999999999996 89999
Q ss_pred HhcCCHHHHHhcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccC
Q 039703 141 VLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGD 220 (284)
Q Consensus 141 la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D 220 (284)
|+++++++|+.|||+++|++||+++|+.+.+|.++++.|..+++++++++|++|||||+|||+|||+|+||++|+||++|
T Consensus 98 la~~~~e~Lr~~G~~~~KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D 177 (225)
T 2yg9_A 98 LLKVSGDDLRGVGLSWAKVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGD 177 (225)
T ss_dssp HTTSCHHHHHHTTCCHHHHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTC
T ss_pred HHcCCHHHHHHCCCcHHHHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCCHHHHHHHHHhcCChhHHHHHHHHHhhh
Q 039703 221 LGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLME 265 (284)
Q Consensus 221 ~~v~r~~~rly~~~~~~~~~~~~~~~e~~~Pyrs~a~~yLw~~~~ 265 (284)
+||+|+++++| + +++++.+.+.|+||++|+++|||++++
T Consensus 178 ~~v~r~~~~l~-----~-~~~~~~~~e~~~P~r~~a~~~Lw~~~~ 216 (225)
T 2yg9_A 178 LALRQGVERLY-----P-GEDWRDVTARWAPYRSLASRYLWANSA 216 (225)
T ss_dssp HHHHHHHHHHS-----T-TSCHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-----C-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999997 2 467889999999999999999998765
No 5
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=100.00 E-value=8.5e-47 Score=349.99 Aligned_cols=202 Identities=26% Similarity=0.380 Sum_probs=190.3
Q ss_pred ccccCCCCCchhHHHHHHHHHhcCchHHHHHHHcCCCCCCC--CCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCC-
Q 039703 57 PKIFKPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFES--SRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGE- 133 (284)
Q Consensus 57 p~~~~~l~l~~d~~~~~~~l~~~Dp~l~~li~~~~g~r~~~--~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~- 133 (284)
.+++++|++|.|++.+ ++...||.|+.+++.++|+|+++ ..||||+||++||+||++++++.+++++|+++||+.
T Consensus 74 ~~~~~~fdLd~d~~~~--~~~~~D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~ 151 (295)
T 2jhn_A 74 RKLVEYLGLQNPEELY--RFMDGDEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEV 151 (295)
T ss_dssp HHHHHHHTCSCCHHHH--HHHHTSHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEE
T ss_pred HHHHHHhCCCCCHHHH--HhhccCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCC
Confidence 4678999999999998 78799999999999999999987 799999999999999999999999999999999964
Q ss_pred --------CCCCHHHHhcCCHHHHHhcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHH
Q 039703 134 --------DNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMF 205 (284)
Q Consensus 134 --------~~p~Pe~la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~v 205 (284)
.||+|++|+++++++|+.|||+++|++||+++|+. | +++.+..++++++++.|++|||||+|||+||
T Consensus 152 ~~~g~~~~~fPtp~~la~~~~~~Lr~~G~~~rKa~~i~~~A~~---g--~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~i 226 (295)
T 2jhn_A 152 EWNGLKFYGFPTQEAILKAGVEGLRECGLSRRKAELIVEIAKE---E--NLEELKEWGEEEAYEYLTSFKGIGRWTAELV 226 (295)
T ss_dssp EETTEEEECCCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTC---S--SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHH
T ss_pred CCCCCccccCCCHHHHHcCCHHHHHHcCCCHHHHHHHHHHHHC---C--CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHH
Confidence 28999999999999999999999999999999998 5 6777889999999999999999999999999
Q ss_pred HHHhCCCCCcccccChHHHHHHHHHhCCCC-CCCHHHHHHHHHhcCChhHHHHHHHHHhhhh
Q 039703 206 MIFSLHKPDVLPVGDLGVRKGLQVLYGLKE-LPGALKMEEVCEKWKPYRSVGSWYMWRLMEA 266 (284)
Q Consensus 206 llf~l~r~dvfPv~D~~v~r~~~rly~~~~-~~~~~~~~~~~e~~~Pyrs~a~~yLw~~~~~ 266 (284)
++|++| +|+||++|.+++|+++++|+... .+++++++++.+.|+||++|+++|||++.+.
T Consensus 227 ll~~lg-~d~fpvdD~~~rr~~~~~~g~~~~~~~~~~~~~~~e~~~p~r~~a~~~Lw~~~~~ 287 (295)
T 2jhn_A 227 LSIALG-KNVFPADDLGVRRAVSRLYFNGEIQSAEKVREIARERFGRFARDILFYLFLYDRF 287 (295)
T ss_dssp HHHTTC-CCCCCTTCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHTGGGHHHHHHHHHHHHHH
T ss_pred HHHccC-CCcccchHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcccHHHHHHHHHHHhccc
Confidence 999999 99999999999999999999876 6788999999999999999999999998874
No 6
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=100.00 E-value=4.2e-45 Score=328.33 Aligned_cols=199 Identities=34% Similarity=0.585 Sum_probs=185.9
Q ss_pred cCCCCCchhHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHH
Q 039703 60 FKPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPD 139 (284)
Q Consensus 60 ~~~l~l~~d~~~~~~~l~~~Dp~l~~li~~~~g~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe 139 (284)
|+||+ ++.++++++...||.|+.+++.+|+++++...+|||+||++||+||++++++.+++.+|+++||. .||+|+
T Consensus 13 ~~~~~---~~~~~~~~l~~~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~-~fPtp~ 88 (233)
T 2h56_A 13 MRYFS---TDSPEVKTIVAQDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG-ALEKPE 88 (233)
T ss_dssp EEEEC---TTSHHHHHHHTTCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTS-CCCCTH
T ss_pred HHHhh---hHHHHHHHHHhcCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CCCCHH
Confidence 55664 44667888889999999999999999887889999999999999999999999999999999985 468999
Q ss_pred HHhcCCHHHHHhcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCccccc
Q 039703 140 AVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVG 219 (284)
Q Consensus 140 ~la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~ 219 (284)
+|+++++++|++|||+++||+||+++|+.+.+|.++++.+..+|+++++++|++|||||+|||+|||+|+||++|+||||
T Consensus 89 ~la~~~~e~Lr~~G~~~~KA~~I~~~A~~i~~~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvd 168 (233)
T 2h56_A 89 QLYRVSDEALRQAGVSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVG 168 (233)
T ss_dssp HHHTSCHHHHHHTTCCHHHHHHHHHHHHHHHTTSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTT
T ss_pred HHHcCCHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCc
Confidence 99999999999999999999999999999999998999899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhCCCCCCCHHHHHHHHHhcCChhHHHHHHHHH
Q 039703 220 DLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWR 262 (284)
Q Consensus 220 D~~v~r~~~rly~~~~~~~~~~~~~~~e~~~Pyrs~a~~yLw~ 262 (284)
|.++++++.+.|+.+..+++++++++.+.|+||++|+++|||.
T Consensus 169 d~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~P~~~~a~~~lw~ 211 (233)
T 2h56_A 169 DVGLQRGAKWLYGNGEGDGKKLLIYHGKAWAPYETVACLYLWK 211 (233)
T ss_dssp CHHHHHHHHHHHSSSCSCHHHHHHHHHGGGTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCCCCHHHHHHHHHHcCcHHHHHHHHHHh
Confidence 9999999999998766678899999999999999999999994
No 7
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=100.00 E-value=1.1e-43 Score=337.38 Aligned_cols=208 Identities=15% Similarity=0.192 Sum_probs=187.0
Q ss_pred cccccCCCCCchhHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCC--
Q 039703 56 SPKIFKPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGE-- 133 (284)
Q Consensus 56 ~p~~~~~l~l~~d~~~~~~~l~~~Dp~l~~li~~~~g~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~-- 133 (284)
..+++++|++|.|+++++++|...||.|+.+++.++|+|+.. .+|||+||++||+||++++++.+++++|+++||+.
T Consensus 108 ~~~~r~~fdLd~d~~~~~~~l~~~Dp~l~~l~~~~~glR~~~-~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~ 186 (360)
T 2xhi_A 108 LEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLR-QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLI 186 (360)
T ss_dssp HHHHHHHTTTTSCHHHHHHHHHHHCHHHHHHHHHSTTCCCCC-CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEE
T ss_pred HHHHHHhcccCCCHHHHHHHHHhhCHHHHHHHHHcCCCCCCC-CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcc
Confidence 346889999999999999999999999999999999999865 89999999999999999999999999999999974
Q ss_pred --------CCCCHHHHhcCCHH-HHHhcCCChHHHHHHHHHHHHHHcC---CCChhHhhcCChHHHHHHhhcCCCccHHH
Q 039703 134 --------DNILPDAVLAVSPQ-QLREIGVSYRKASYLRDLAEKYTDG---ILSDESIVEMDDVTMFKMLTSVKGIGAWS 201 (284)
Q Consensus 134 --------~~p~Pe~la~~~~e-~Lr~~Gl~~rKA~~I~~lA~~i~~g---~l~l~~l~~~~~ee~~~~L~~l~GIGpwT 201 (284)
.||+|++|++++.+ +|+.|||+ .||+||+++|+.+.+| .++++.+..++++++++.|++|||||+||
T Consensus 187 ~~~g~~~~~fPtpe~La~~~~ee~Lr~~Gl~-~RA~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~T 265 (360)
T 2xhi_A 187 QLDDVTYHGFPSLQALAGPEVEAHLRKLGLG-YRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCV 265 (360)
T ss_dssp EETTEEEECCCCHHHHTSTTHHHHHHHTTCT-THHHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHH
T ss_pred cCCCcccccCCCHHHHHcCCHHHHHHHcCCc-HHHHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHH
Confidence 48999999999875 79999996 5699999999999986 46788898999999999999999999999
Q ss_pred HHHHHHHhCCCCCcccccChHHHHHHHHHhCCCCC------CCHHH---H-HHHHHhcCChhHHHHHHHHHhhhh
Q 039703 202 VHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKEL------PGALK---M-EEVCEKWKPYRSVGSWYMWRLMEA 266 (284)
Q Consensus 202 A~~vllf~l~r~dvfPv~D~~v~r~~~rly~~~~~------~~~~~---~-~~~~e~~~Pyrs~a~~yLw~~~~~ 266 (284)
|+||++|+||++|+||| |+||+|+++++||+... ++++. + +.+.+.|+||++|+++|||++...
T Consensus 266 A~~ill~alg~pd~fpv-DthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~~e~w~p~~~~a~~yLw~~~~~ 339 (360)
T 2xhi_A 266 ADKICLMALDKPQAVPV-NVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLR 339 (360)
T ss_dssp HHHHHHHHSCCTTCCCC-SHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCEEEe-cHHHHHHHHHHhCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999 99999999999997532 22322 2 336899999999999999987654
No 8
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=100.00 E-value=1.2e-42 Score=320.11 Aligned_cols=196 Identities=21% Similarity=0.306 Sum_probs=177.6
Q ss_pred cccccCCCCCchhHHHHHHHHHhcCchHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCC--
Q 039703 56 SPKIFKPLTFKGEVDIALRHLRDKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGE-- 133 (284)
Q Consensus 56 ~p~~~~~l~l~~d~~~~~~~l~~~Dp~l~~li~~~~g~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~-- 133 (284)
..+++++|++|.|+..+.+.| +.+++.++|+|+++..||||+||++||+||++++++.+++++|+++||+.
T Consensus 75 ~~~~~~~~~ld~d~~~~~~~l-------~~l~~~~~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~ 147 (282)
T 1mpg_A 75 LAKMSRLFDLQCNPQIVNGAL-------GRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLD 147 (282)
T ss_dssp HHHHHHHHTTTCCHHHHHHHH-------GGGGTTCTTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCS
T ss_pred HHHHHHHHcCCCCHHHHHHHH-------HHHHHHcCCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCC
Confidence 345779999999999887655 35677889999988899999999999999999999999999999999974
Q ss_pred ------CCCCHHHHhcCCHHHHHhcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHH
Q 039703 134 ------DNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMI 207 (284)
Q Consensus 134 ------~~p~Pe~la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vll 207 (284)
.||+|++|+++++++|+.|||+++|++||+++|+.+.+|.++++.+ ++.+++++.|++|||||+|||+||++
T Consensus 148 ~~~~~~~fPtp~~la~~~~~~Lr~~G~~~~ra~~i~~~A~~~~~~~~~~~~~--~~~~~~~~~L~~lpGIG~~TA~~ill 225 (282)
T 1mpg_A 148 DFPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIP--GDVEQAMKTLQTFPGIGRWTANYFAL 225 (282)
T ss_dssp SCTTCBCCCCHHHHHTCCHHHHHHTTSCHHHHHHHHHHHHHHHHTCSCSSCC--SCHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred CCCCcccCCCHHHHHcCCHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCcccc--CCHHHHHHHHhcCCCcCHHHHHHHHH
Confidence 3899999999999999999999999999999999999998877655 78899999999999999999999999
Q ss_pred HhCCCCCcccccChHHHHHHHHHhCCCCCCCHHHHHHHHHhcCChhHHHHHHHHHhhhhc
Q 039703 208 FSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWRLMEAK 267 (284)
Q Consensus 208 f~l~r~dvfPv~D~~v~r~~~rly~~~~~~~~~~~~~~~e~~~Pyrs~a~~yLw~~~~~~ 267 (284)
|+||++|+||++|.++++.+ ...++++++++.+.|+||++|+++|||..++..
T Consensus 226 ~~lg~~d~~pvdd~~~r~~l-------~~~~~~~~~~~~~~~~P~r~~a~~~lw~~~~~~ 278 (282)
T 1mpg_A 226 RGWQAKDVFLPDDYLIKQRF-------PGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQ 278 (282)
T ss_dssp HHSCCSSCCCTTCHHHHHHS-------TTCCHHHHHHHHGGGTTCHHHHHHHHHTCTTCC
T ss_pred HhCCCCCcCccccHHHHHHh-------ccCCHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence 99999999999999999766 246788999999999999999999999987654
No 9
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=99.97 E-value=6.2e-31 Score=235.11 Aligned_cols=170 Identities=18% Similarity=0.164 Sum_probs=147.0
Q ss_pred chHHHHHHHcCCCCC-CCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHH----HHhcCCC
Q 039703 81 PLLATLIDAHRPPTF-ESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQ----LREIGVS 155 (284)
Q Consensus 81 p~l~~li~~~~g~r~-~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe~la~~~~e~----Lr~~Gl~ 155 (284)
.++..|.+.||+... ....||||.||++||+||++++++..++.+|.+.| |+|++|+++++++ |+.+||+
T Consensus 12 ~i~~~L~~~y~~~~~~l~~~~pfe~Lv~~IlsQqts~~~v~~~~~~l~~~f-----pt~~~la~a~~~~l~~~i~~~G~~ 86 (226)
T 1orn_A 12 YCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKY-----RTPHDYIAVPLEELEQDIRSIGLY 86 (226)
T ss_dssp HHHHHHHHHCTTCCCCSCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-----CSHHHHHSSCHHHHHHHTGGGSSH
T ss_pred HHHHHHHHHcCccCCCCCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHC-----CCHHHHHcCCHHHHHHHHHHcCCh
Confidence 367888889987643 24689999999999999999999999999999987 7999999999998 5789999
Q ss_pred hHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHHhCCCC
Q 039703 156 YRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKE 235 (284)
Q Consensus 156 ~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rly~~~~ 235 (284)
++||++|+++|+.+.++.- .+.++.+++|++|||||+|||++||+|+||++ +||+ |+|++|++.|++....
T Consensus 87 ~~KA~~l~~~a~~i~~~~~-------g~~p~~~~~L~~lpGIG~~TA~~il~~a~g~~-~~~v-D~~v~Rv~~rlg~~~~ 157 (226)
T 1orn_A 87 RNKARNIQKLCAMLIDKYN-------GEVPRDRDELMKLPGVGRKTANVVVSVAFGVP-AIAV-DTHVERVSKRLGFCRW 157 (226)
T ss_dssp HHHHHHHHHHHHHHHHHST-------TSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCC-CCCC-CHHHHHHHHHHTSSCT
T ss_pred HHHHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHCCCccHHHHHHHHHHHCCCc-eeee-CHHHHHHHHHhCCCCC
Confidence 9999999999999987410 12234789999999999999999999999997 9999 9999999999844344
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHHhh
Q 039703 236 LPGALKMEEVCEKWKPYRSVGSWYMWRLM 264 (284)
Q Consensus 236 ~~~~~~~~~~~e~~~Pyrs~a~~yLw~~~ 264 (284)
..+++++++..+.|.|++.|..++.|...
T Consensus 158 ~~~~~~~~~~l~~~~p~~~~~~~~~~lv~ 186 (226)
T 1orn_A 158 DDSVLEVEKTLMKIIPKEEWSITHHRMIF 186 (226)
T ss_dssp TCCHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 66889999999999999999998887653
No 10
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=99.97 E-value=2.1e-31 Score=235.60 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=143.1
Q ss_pred chHHHHHHHcCCCC-CCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHH----HhcCCC
Q 039703 81 PLLATLIDAHRPPT-FESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQL----REIGVS 155 (284)
Q Consensus 81 p~l~~li~~~~g~r-~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe~la~~~~e~L----r~~Gl~ 155 (284)
.++..|.+.||+.. +....||||.||++||+||++++++.+++.+|.+.| |+|++|+++++++| +.+||+
T Consensus 8 ~i~~~L~~~~~~~~~~~~~~~pfe~lv~~Il~qqts~~~v~~~~~~l~~~f-----pt~~~la~a~~~~l~~~i~~~G~~ 82 (211)
T 2abk_A 8 EILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVA-----NTPAAMLELGVEGVKTYIKTIGLY 82 (211)
T ss_dssp HHHHHHHHHCSSCCCSSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHHTTTC-----CSHHHHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHC-----CCHHHHHCCCHHHHHHHHHHcCCC
Confidence 46888889998764 445789999999999999999999999999998665 89999999999885 568999
Q ss_pred hHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHHhCCCC
Q 039703 156 YRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKE 235 (284)
Q Consensus 156 ~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rly~~~~ 235 (284)
++||++|+++|+.+.++. +.+.++.++.|++|||||+|||++|++|+++++ +||+ |+|++|++.++ |+..
T Consensus 83 ~~KA~~l~~~a~~~~~~~-------~g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~v-D~~v~Rv~~rl-gl~~ 152 (211)
T 2abk_A 83 NSKAENIIKTCRILLEQH-------NGEVPEDRAALEALPGVGRKTANVVLNTAFGWP-TIAV-DTHIFRVCNRT-QFAP 152 (211)
T ss_dssp HHHHHHHHHHHHHHHHHT-------TTSCCSCHHHHHHSTTCCHHHHHHHHHHHHCCC-CCCC-CHHHHHHHHHH-CSSC
T ss_pred hHHHHHHHHHHHHHHHHc-------CCCchHHHHHHHhCCCCChHHHHHHHHHHCCCC-cCCc-CHHHHHHHHHh-CCCC
Confidence 999999999999998742 112346789999999999999999999999999 9999 99999999998 6666
Q ss_pred CCCHHHHHHHHHhcCChhHHHHHHHHH
Q 039703 236 LPGALKMEEVCEKWKPYRSVGSWYMWR 262 (284)
Q Consensus 236 ~~~~~~~~~~~e~~~Pyrs~a~~yLw~ 262 (284)
..+++++++..+.|.|+..|..++.|.
T Consensus 153 ~~~~~~~~~~~~~~~p~~~~~~~~~~l 179 (211)
T 2abk_A 153 GKNVEQVEEKLLKVVPAEFKVDCHHWL 179 (211)
T ss_dssp CSSHHHHHHHHHHHSCGGGTTTHHHHH
T ss_pred CCCHHHHHHHHHHhcChhhHHHHHHHH
Confidence 678899999999999976665555443
No 11
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=99.97 E-value=1.3e-30 Score=232.10 Aligned_cols=168 Identities=18% Similarity=0.266 Sum_probs=143.1
Q ss_pred HHHHHHHcCC-CCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHH----HhcCCChH
Q 039703 83 LATLIDAHRP-PTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQL----REIGVSYR 157 (284)
Q Consensus 83 l~~li~~~~g-~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe~la~~~~e~L----r~~Gl~~r 157 (284)
|..+++.++. +.|....+|||.||++||+||++++++.+++.+|.+.| |+|++|+++++++| +.+||+++
T Consensus 16 l~~~~~~~~~~~pw~~~~~pfe~lv~~IlsQqts~~~~~~~~~~l~~~f-----ptp~~la~a~~e~l~~~i~~~G~~~~ 90 (221)
T 1kea_A 16 ILTFWNTDRRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKY-----KCFEDILKTPKSEIAKDIKEIGLSNQ 90 (221)
T ss_dssp HHHHHHHSCCCCGGGGCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC-----CSHHHHHHSCHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHhhhhCcCCCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHC-----CCHHHHHCCCHHHHHHHHHHCCCCHH
Confidence 5566666653 45666789999999999999999999999999999986 89999999999998 78999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHHhCCCCCC
Q 039703 158 KASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELP 237 (284)
Q Consensus 158 KA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rly~~~~~~ 237 (284)
||++|+++|+.+.++.- .+.++.+++|++|||||+|||++|++|+++++ +||+ |+|++|++.|+||+...+
T Consensus 91 KA~~l~~~a~~i~~~~~-------g~~p~~~~~L~~lpGIG~~TA~~il~~~~~~~-~~~v-D~~v~Rv~~rl~gl~~~~ 161 (221)
T 1kea_A 91 RAEQLKELARVVINDYG-------GRVPRNRKAILDLPGVGKYTCAAVMCLAFGKK-AAMV-DANFVRVINRYFGGSYEN 161 (221)
T ss_dssp HHHHHHHHHHHHHHHHT-------TSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCC-CCCC-CHHHHHHHHHHHCGGGTT
T ss_pred HHHHHHHHHHHHHHHhC-------CCchHHHHHHHhCCCCcHHHHHHHHHHhcCCC-ccee-cHHHHHHHHHHhCCCCCC
Confidence 99999999999987310 11225789999999999999999999999997 7999 999999999999975433
Q ss_pred C---HHHHHHHHHhcCChhHHHHHHHHHhh
Q 039703 238 G---ALKMEEVCEKWKPYRSVGSWYMWRLM 264 (284)
Q Consensus 238 ~---~~~~~~~~e~~~Pyrs~a~~yLw~~~ 264 (284)
+ .+++.++++.|.||+.|..+|.|...
T Consensus 162 ~~~~~~~l~~~ae~~~P~~~~~~~~~~lv~ 191 (221)
T 1kea_A 162 LNYNHKALWELAETLVPGGKCRDFNLGLMD 191 (221)
T ss_dssp CCTTSHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 2 34678899999999999998877643
No 12
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=99.97 E-value=7.7e-30 Score=227.70 Aligned_cols=165 Identities=16% Similarity=0.179 Sum_probs=136.8
Q ss_pred hHHHHHHHcCC--CCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHHH----hcCCC
Q 039703 82 LLATLIDAHRP--PTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLR----EIGVS 155 (284)
Q Consensus 82 ~l~~li~~~~g--~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe~la~~~~e~Lr----~~Gl~ 155 (284)
.|..+++.+|. +.|+...||||.||++||+||++++++..++.+|...| |+|++|+++++++|+ .+||+
T Consensus 9 ~l~~~~~~~g~~~l~w~~~~~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~-----pt~~~la~~~~~~l~~~i~~~G~~ 83 (225)
T 1kg2_A 9 QVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARF-----PTVTDLANAPLDEVLHLWTGLGYY 83 (225)
T ss_dssp HHHHHHHHHCCCCSGGGSSCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHC-----SSHHHHHHSCHHHHHHHHTTSCCT
T ss_pred HHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHCcCCHHHHHHHHHHHHHHC-----CCHHHHHCCCHHHHHHHHHhCChH
Confidence 36677777763 57777789999999999999999999999999999886 799999999999986 68998
Q ss_pred hHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHHhCCCC
Q 039703 156 YRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKE 235 (284)
Q Consensus 156 ~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rly~~~~ 235 (284)
+||++|+++|+.+.++.- .+.++.+++|++|||||+|||++||+|++|+++ |++ |+||+|++.|+|++..
T Consensus 84 -~kA~~l~~~a~~i~~~~~-------g~~p~~~~~L~~lpGIG~~TA~~il~~a~~~~~-~~v-D~~v~Rv~~rl~~~~~ 153 (225)
T 1kg2_A 84 -ARARNLHKAAQQVATLHG-------GKFPETFEEVAALPGVGRSTAGAILSLSLGKHF-PIL-DGNVKRVLARCYAVSG 153 (225)
T ss_dssp -HHHHHHHHHHHHHHHHST-------TSCCCSHHHHHTSTTCCHHHHHHHHHHHHCCSC-CCC-CHHHHHHHHHHHTCCS
T ss_pred -HHHHHHHHHHHHHHHHhC-------CCchHHHHHHhcCCCCcHHHHHHHHHHhCCCCc-cee-CHHHHHHHHHHcCCCC
Confidence 689999999999987421 112246899999999999999999999999995 687 9999999999998864
Q ss_pred CC----CHHHHHHHHHhcCChhHHHHHHHH
Q 039703 236 LP----GALKMEEVCEKWKPYRSVGSWYMW 261 (284)
Q Consensus 236 ~~----~~~~~~~~~e~~~Pyrs~a~~yLw 261 (284)
.. +++++.++.+.|.|+..|..++.|
T Consensus 154 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 183 (225)
T 1kg2_A 154 WPGKKEVENKLWSLSEQVTPAVGVERFNQA 183 (225)
T ss_dssp CTTSHHHHHHHHHHHHHHCCSTTHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHCCcccHHHHHHH
Confidence 33 245677788899996555555533
No 13
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=99.96 E-value=1.5e-29 Score=224.94 Aligned_cols=142 Identities=21% Similarity=0.218 Sum_probs=125.8
Q ss_pred CCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHH-hCCCCCCC------HHHHhcCCHHHH----HhcCCChHHHHHHH
Q 039703 95 FESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVAL-FNGEDNIL------PDAVLAVSPQQL----REIGVSYRKASYLR 163 (284)
Q Consensus 95 ~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~-~G~~~~p~------Pe~la~~~~e~L----r~~Gl~~rKA~~I~ 163 (284)
|+...||||.||++||+||++++++.+++.+|+++ | |+ |++|+++++++| +.+||+++||+||+
T Consensus 24 ~~~~~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~-----pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~ 98 (218)
T 1pu6_A 24 WWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFI-----LENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLI 98 (218)
T ss_dssp SSTTTTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTS-----SCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC-----CCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHH
Confidence 44567999999999999999999999999999998 5 56 999999999988 78999999999999
Q ss_pred HHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHHhCCCCCCCHHHHH
Q 039703 164 DLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKME 243 (284)
Q Consensus 164 ~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rly~~~~~~~~~~~~ 243 (284)
++|+.+.++...++ .++.++.+++|++|||||+|||+|||+|+++++ +||+ |+|++|++.|+ |+. ..++++++
T Consensus 99 ~~a~~i~~~~~~l~---~~~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~-~~~v-D~~v~Ri~~rl-g~~-~~~~~~~~ 171 (218)
T 1pu6_A 99 DLSGNILKDFQSFE---NFKQEVTREWLLDQKGIGKESADAILCYACAKE-VMVV-DKYSYLFLKKL-GIE-IEDYDELQ 171 (218)
T ss_dssp HHHHHHHHHHSSHH---HHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCS-CCCC-CHHHHHHHHHT-TCC-CCSHHHHH
T ss_pred HHHHHHHHhcCChh---hccchHHHHHHHcCCCcCHHHHHHHHHHHCCCC-cccc-CHHHHHHHHHc-CCC-CCCHHHHH
Confidence 99999998643343 345678899999999999999999999999997 9999 99999999996 776 56888888
Q ss_pred HHHHh
Q 039703 244 EVCEK 248 (284)
Q Consensus 244 ~~~e~ 248 (284)
++.+.
T Consensus 172 ~~l~~ 176 (218)
T 1pu6_A 172 HFFEK 176 (218)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87766
No 14
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.96 E-value=1.5e-28 Score=216.94 Aligned_cols=170 Identities=14% Similarity=0.144 Sum_probs=136.7
Q ss_pred hHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHH----HHhcC--CC
Q 039703 82 LLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQ----LREIG--VS 155 (284)
Q Consensus 82 ~l~~li~~~~g~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe~la~~~~e~----Lr~~G--l~ 155 (284)
.+....+.|+...|....+||+.||++||+||++++++.+++.+| |+.|+.+++++ |++|| |+
T Consensus 14 ~v~~~~~~f~~~~~~~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L-----------~~~l~~~~~e~l~~~ir~~G~g~~ 82 (207)
T 3fhg_A 14 RVLERVDEFRLNNLSNEEVWFRELTLCLLTANSSFISAYQALNCL-----------GQKIYYANEEEIRNILKSCKYRFY 82 (207)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH-----------GGGGGTCCHHHHHHHHHHTTCTTH
T ss_pred HHHHHHHHHhhccCCCcCCHHHHHHHHHHcCCCCHHHHHHHHHHH-----------HHHHHcCCHHHHHHHHHHhccCcH
Confidence 344445556445566678999999999999999999999999999 24677777776 56677 77
Q ss_pred hHHHHHHHHHHHHHHcCC-CChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHHhCCC
Q 039703 156 YRKASYLRDLAEKYTDGI-LSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLK 234 (284)
Q Consensus 156 ~rKA~~I~~lA~~i~~g~-l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rly~~~ 234 (284)
++||+||+++|+++.++. .+++.+..+++++++++|++|||||+|||+|||+|. +++++||+ |+|++|++.|++..+
T Consensus 83 ~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~-~~~~~~~v-D~~v~Ri~~rlg~~~ 160 (207)
T 3fhg_A 83 NLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQEASHFLRNV-GYFDLAII-DRHIIDFMRRIGAIG 160 (207)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHT-TCCSSCCC-CHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHh-CCCCccee-cHHHHHHHHHcCCCC
Confidence 789999999999887642 246677778999999999999999999999999983 33689999 999999999995543
Q ss_pred C----CCCHH-------HHHHHHHhcCChhHHHHHHHHHhh
Q 039703 235 E----LPGAL-------KMEEVCEKWKPYRSVGSWYMWRLM 264 (284)
Q Consensus 235 ~----~~~~~-------~~~~~~e~~~Pyrs~a~~yLw~~~ 264 (284)
. ..+++ .+..+++.++.+.++..+|+|...
T Consensus 161 ~~~~k~~~~k~y~~~~~~l~~~~~~~~~~~~~lDl~lw~~~ 201 (207)
T 3fhg_A 161 ETNVKQLSKSLYISFENILKSIASNLNMSVGILDLFIWYKE 201 (207)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3 22332 345677889999999999999863
No 15
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.95 E-value=9.8e-28 Score=213.55 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=138.7
Q ss_pred chHHHHHHHcCCC-CCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHH----HHhcC--
Q 039703 81 PLLATLIDAHRPP-TFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQ----LREIG-- 153 (284)
Q Consensus 81 p~l~~li~~~~g~-r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe~la~~~~e~----Lr~~G-- 153 (284)
+.+..-++.|..+ .+....+||+.||.+||+||++++++.+++++| |+.|+.+++++ |+++|
T Consensus 29 ~~i~~r~~ef~~~~~~~~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L-----------p~~l~~~~~eeL~~~Ir~~G~R 97 (219)
T 3n0u_A 29 PLVEQRFEEFKRLGEEGTEEDLFCELSFCVLTANWSAEGGIRAQKEI-----------GKGFVHLPLEELAEKLREVGHR 97 (219)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTTSCHHHHHHHHHHH-----------TTHHHHCCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH-----------HHHHHcCCHHHHHHHHHHhcch
Confidence 4445555555333 344567999999999999999999999999999 45788888887 57899
Q ss_pred CChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhh-cCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHHhC
Q 039703 154 VSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLT-SVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYG 232 (284)
Q Consensus 154 l~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~-~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rly~ 232 (284)
|+++||+||+++|+.+ | ++..+..++.++++++|+ +|||||+|||+|||+| +++.++||| |+|++|++.|++-
T Consensus 98 f~~~KA~~I~~~a~~i--g--~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~-~g~~~~~~V-Dthv~Ri~~rlg~ 171 (219)
T 3n0u_A 98 YPQKRAEFIVENRKLL--G--KLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRN-TGVEDLAIL-DKHVLRLMKRHGL 171 (219)
T ss_dssp SHHHHHHHHHHHGGGT--T--THHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHT-TTCCSCCCC-CHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHH--H--HHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHH-cCCCCeeee-cHHHHHHHHHcCC
Confidence 9999999999999988 4 456667899999999999 9999999999999999 888889999 9999999999955
Q ss_pred CCC---CCCHH-------HHHHHHHhcCChhHHHHHHHHHhh
Q 039703 233 LKE---LPGAL-------KMEEVCEKWKPYRSVGSWYMWRLM 264 (284)
Q Consensus 233 ~~~---~~~~~-------~~~~~~e~~~Pyrs~a~~yLw~~~ 264 (284)
.+. ..+++ .+.++++.++.+.+...+|||...
T Consensus 172 ~~~~~k~~t~k~y~~ie~~~~~~a~~~g~~~~~ldl~lW~~~ 213 (219)
T 3n0u_A 172 IQEIPKGWSKKRYLYVEEILRKVAEAFGESPGKFDLYLWYLV 213 (219)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCcCcCcCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444 22332 456788999999999999999863
No 16
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.94 E-value=1.5e-25 Score=213.00 Aligned_cols=149 Identities=16% Similarity=0.290 Sum_probs=128.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHH----HhcCCChHHHHHHHHHH
Q 039703 91 RPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQL----REIGVSYRKASYLRDLA 166 (284)
Q Consensus 91 ~g~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe~la~~~~e~L----r~~Gl~~rKA~~I~~lA 166 (284)
+.+.|+...|||+.||++||+||++++++..++.+|+++| |+|++|++++.++| +.+||++ ||++|+++|
T Consensus 29 r~lpw~~~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~-----pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a 102 (369)
T 3fsp_A 29 RDLPWRKDRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF-----PTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAV 102 (369)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC-----CSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHH
T ss_pred CCCCCCCCCChHHHHHHHHHhccCcHHHHHHHHHHHHHHC-----CCHHHHHCCCHHHHHHHHHhcChHH-HHHHHHHHH
Confidence 4567777889999999999999999999999999999987 79999999999997 5689987 899999999
Q ss_pred HHHHc---CCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHHhCCCCCC----CH
Q 039703 167 EKYTD---GILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELP----GA 239 (284)
Q Consensus 167 ~~i~~---g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rly~~~~~~----~~ 239 (284)
+.+.+ |.+ ++.++.|++|||||+|||++||+|+|+++ +||| |+||+|++.|+++.+..+ ++
T Consensus 103 ~~~~~~~~g~~----------p~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~v-D~~v~Rv~~rl~~~~~~~~~~~~~ 170 (369)
T 3fsp_A 103 KEVKTRYGGKV----------PDDPDEFSRLKGVGPYTVGAVLSLAYGVP-EPAV-DGNVMRVLSRLFLVTDDIAKPSTR 170 (369)
T ss_dssp HHHHHHHTTCC----------CCSHHHHHTSTTCCHHHHHHHHHHHHCCC-CCCC-CHHHHHHHHHHTTCCSCTTSHHHH
T ss_pred HHHHHHcCCCC----------hhHHHHHhcCCCcCHHHHHHHHHHHCCCC-cccc-cHHHHHHHHHHcCcccCccccchH
Confidence 99987 332 24789999999999999999999999998 7898 999999999998876533 34
Q ss_pred HHHHHHHHhcCChhHHHH
Q 039703 240 LKMEEVCEKWKPYRSVGS 257 (284)
Q Consensus 240 ~~~~~~~e~~~Pyrs~a~ 257 (284)
+++++.++.|.|...+..
T Consensus 171 ~~~~~~~~~~~p~~~~~~ 188 (369)
T 3fsp_A 171 KRFEQIVREIMAYENPGA 188 (369)
T ss_dssp HHHHHHHHHHCCSSSHHH
T ss_pred HHHHHHHHHhCChhhHHH
Confidence 667888899988543333
No 17
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=206.27 Aligned_cols=178 Identities=14% Similarity=0.180 Sum_probs=133.5
Q ss_pred cCCCCCchhHHHHHHHHHhcCchHHHHHHHc-CCCCCCC--------CCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHh
Q 039703 60 FKPLTFKGEVDIALRHLRDKDPLLATLIDAH-RPPTFES--------SRSPFLSLAKSILYQQLAYKAAKSIYTRFVALF 130 (284)
Q Consensus 60 ~~~l~l~~d~~~~~~~l~~~Dp~l~~li~~~-~g~r~~~--------~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~ 130 (284)
.+.|+-+.++..+-+.| -.+.+.+ ..+.|+. ..+||+.||++||+||++++++..++.+|.++|
T Consensus 6 ~~~~~~~~~~~~~~~~l-------l~Wy~~~~R~lPWR~~~~~~~d~~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~f 78 (287)
T 3n5n_X 6 YHLFRDVAEVTAFRGSL-------LSWYDQEKRDLPWRRRAEDEMDLDRRAYAVWVSEVMLQQTQVATVINYYTGWMQKW 78 (287)
T ss_dssp TTSCCCHHHHHHHHHHH-------HHHHHHHCCCCHHHHHHHHCCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHHHHHHH-------HHHHHHcCCCCCCcCcCccccCCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHC
Confidence 46777767766655443 3344443 2455543 247999999999999999999999999999997
Q ss_pred CCCCCCCHHHHhcCCHHHH----HhcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhc-CCCccHHHHHHH
Q 039703 131 NGEDNILPDAVLAVSPQQL----REIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTS-VKGIGAWSVHMF 205 (284)
Q Consensus 131 G~~~~p~Pe~la~~~~e~L----r~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~-l~GIGpwTA~~v 205 (284)
|+|++|++++.++| +.+||++ ||++|+++|+.+.++.- ..++ +.+++|++ |||||+|||++|
T Consensus 79 -----ptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A~~i~~~~~-----g~~p--~~~~~Ll~~LpGIG~kTA~~i 145 (287)
T 3n5n_X 79 -----PTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGARKVVEELG-----GHMP--RTAETLQQLLPGVGRYTAGAI 145 (287)
T ss_dssp -----CSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHHHHHHHHST-----TCCC--SSHHHHHHHSTTCCHHHHHHH
T ss_pred -----CCHHHHHcCCHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhC-----CCCc--HHHHHHHHHcCCCCHHHHHHH
Confidence 79999999999987 5789986 89999999999987311 0122 25788998 999999999999
Q ss_pred HHHhCCCCCcccccChHHHHHHHHHhCCCCCCCHHHHH----HHHHhcCChhHHHHHH
Q 039703 206 MIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKME----EVCEKWKPYRSVGSWY 259 (284)
Q Consensus 206 llf~l~r~dvfPv~D~~v~r~~~rly~~~~~~~~~~~~----~~~e~~~Pyrs~a~~y 259 (284)
|+|+||++ +||| |+||+|++.|+++.+...++.+++ .+.+.+-|..-|..++
T Consensus 146 L~~a~g~p-~~~V-Dt~V~Rv~~Rlg~i~~~~~~~~~~~~l~~~a~~~lp~~~~~~~h 201 (287)
T 3n5n_X 146 ASIAFGQA-TGVV-DGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQLVDPARPGDFN 201 (287)
T ss_dssp HHHHSCCC-CCCC-CHHHHHHHHHHTTCCSCTTSHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHhcCCC-Cccc-cHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999998 6898 999999999998776444433332 2334555544443333
No 18
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.93 E-value=1.1e-25 Score=199.53 Aligned_cols=161 Identities=17% Similarity=0.222 Sum_probs=131.5
Q ss_pred HHHHcCCCCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHH----HhcC--CChHHH
Q 039703 86 LIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQL----REIG--VSYRKA 159 (284)
Q Consensus 86 li~~~~g~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe~la~~~~e~L----r~~G--l~~rKA 159 (284)
-++.|..+++....+||+.||.+|||||++++++.+++.+|. +.|+.+++++| +++| |+++||
T Consensus 29 r~~ef~~~~~~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~-----------~~l~~~~~eeL~~~Ir~~G~rf~~~KA 97 (214)
T 3fhf_A 29 RIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIG-----------DGFLTLPREELEEKLKNLGHRFYRKRA 97 (214)
T ss_dssp HHHHHHGGGGSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT-----------THHHHSCHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHhhccCCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH-----------HHHHCCCHHHHHHHHHHHhhHHHHHHH
Confidence 344566666556789999999999999999999999999995 35777887775 7899 999999
Q ss_pred HHHHHHHHHHHcCCCChhHhhcC-ChHHHHHHhh-cCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHHhCCCC--
Q 039703 160 SYLRDLAEKYTDGILSDESIVEM-DDVTMFKMLT-SVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKE-- 235 (284)
Q Consensus 160 ~~I~~lA~~i~~g~l~l~~l~~~-~~ee~~~~L~-~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rly~~~~-- 235 (284)
+||+++++ + |.+ .+.+..+ +.++.+++|+ +|||||+|||+|||+++ ++ +.+|+-|+|++|++.|++-.+.
T Consensus 98 ~~I~~~a~-~--~~l-~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~-~~~~vVDthv~Ri~~RlG~~~~~~ 171 (214)
T 3fhf_A 98 EYIVLARR-F--KNI-KDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNV-GY-DDVAIIDRHILRELYENNYIDEIP 171 (214)
T ss_dssp HHHHHHGG-G--CCH-HHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TC-CSCCCCCHHHHHHHHHTTSSSSCC
T ss_pred HHHHHHHH-h--hHH-HHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-CC-CCcccCcHHHHHHHHHcCCCCCCC
Confidence 99999999 5 432 4566665 7899999999 99999999999999998 67 5678339999999999944432
Q ss_pred -CCCHH-------HHHHHHHhcCChhHHHHHHHHHh
Q 039703 236 -LPGAL-------KMEEVCEKWKPYRSVGSWYMWRL 263 (284)
Q Consensus 236 -~~~~~-------~~~~~~e~~~Pyrs~a~~yLw~~ 263 (284)
..+++ .+..+++.|+.+.|++.+|||..
T Consensus 172 k~lt~~~y~e~~~~l~~~g~~~g~~~g~lDl~lW~~ 207 (214)
T 3fhf_A 172 KTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYL 207 (214)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 12332 35678899999999999999986
No 19
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.89 E-value=1.1e-22 Score=173.01 Aligned_cols=118 Identities=18% Similarity=0.308 Sum_probs=105.0
Q ss_pred CCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHH----HhcCCChHHHHHHHHHHHHHHcCC
Q 039703 98 SRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQL----REIGVSYRKASYLRDLAEKYTDGI 173 (284)
Q Consensus 98 ~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe~la~~~~e~L----r~~Gl~~rKA~~I~~lA~~i~~g~ 173 (284)
..|||+.||++||+||++++++..++.+|+++| |+|++|+++++++| +.+||+++||++|+.+++.+...
T Consensus 28 ~~dP~~vLVs~ILsqQT~~~~v~~~~~~l~~~~-----pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~- 101 (161)
T 4e9f_A 28 FHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKY-----PSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTK- 101 (161)
T ss_dssp TTSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHS-----CSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHS-
T ss_pred cCChHHHHHHHHHHhhCcHHHHHHHHHHHHHHC-----CCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCcCCC-
Confidence 469999999999999999999999999999997 79999999999986 67899999999999999877543
Q ss_pred CChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCC-CCcccccChHHHHHHHHHhCCCC
Q 039703 174 LSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHK-PDVLPVGDLGVRKGLQVLYGLKE 235 (284)
Q Consensus 174 l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r-~dvfPv~D~~v~r~~~rly~~~~ 235 (284)
..+.|++|||||++||+++++|+++. ..|+|+ |..++|.+.+++...+
T Consensus 102 -------------~~~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~-D~~l~r~l~wl~~~~e 150 (161)
T 4e9f_A 102 -------------QWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPE-DHKLNKYHDWLWENHE 150 (161)
T ss_dssp -------------CCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCC-SHHHHHHHHHHHHTC-
T ss_pred -------------ChhhhhcCCCchHHHHHHHHHHHCCCCCCCCCC-cHHHHHHHHHHHcCcc
Confidence 23568899999999999999999996 468888 9999999999977643
No 20
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=93.34 E-value=0.21 Score=49.84 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=59.5
Q ss_pred HHHHHHHHhCCCCCCCHHHHhcCCHHHHHhc-CCChHHHHHHHHHHHHH-------------------------HcCCCC
Q 039703 122 IYTRFVALFNGEDNILPDAVLAVSPQQLREI-GVSYRKASYLRDLAEKY-------------------------TDGILS 175 (284)
Q Consensus 122 i~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~-Gl~~rKA~~I~~lA~~i-------------------------~~g~l~ 175 (284)
++++|++. |- .-++.+|..++.++|..+ ||+..++..|.+-.+.- +++.-+
T Consensus 458 ~i~~L~~~-g~--i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~f~s 534 (586)
T 4glx_A 458 IIDQLVEK-EY--VHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGT 534 (586)
T ss_dssp HHHHHHHT-TC--CSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCS
T ss_pred HHHHHHhc-CC--CCCHHHHhCCCHHHHhcccCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHHcCC
Confidence 45555554 31 246677777777777776 77777777665443322 221124
Q ss_pred hhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHHhC
Q 039703 176 DESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYG 232 (284)
Q Consensus 176 l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rly~ 232 (284)
++.|.+.+ .++|.+|+|||+.+|+.+.-|- . |-+.+..+.+|..
T Consensus 535 l~~l~~a~----~e~l~~i~giG~~~A~si~~ff-~--------~~~n~~~i~~L~~ 578 (586)
T 4glx_A 535 LEALEAAS----IEELQKVPDVGIVVASHVHNFF-A--------EESNRNVISELLA 578 (586)
T ss_dssp HHHHHHCC----HHHHTTSTTCCHHHHHHHHHHH-H--------SHHHHHHHHHHHH
T ss_pred HHHHHccC----HHHHhcCCCccHHHHHHHHHHH-c--------CHHHHHHHHHHHH
Confidence 55555544 3578899999999999988762 1 5566777777643
No 21
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=92.80 E-value=0.14 Score=47.60 Aligned_cols=57 Identities=26% Similarity=0.421 Sum_probs=40.4
Q ss_pred HHHHhc-CCChHHHHHHHHHHHHHHcCCC-ChhHhhcCChHHHHHHhhcCCCccHHHHHHHH
Q 039703 147 QQLREI-GVSYRKASYLRDLAEKYTDGIL-SDESIVEMDDVTMFKMLTSVKGIGAWSVHMFM 206 (284)
Q Consensus 147 e~Lr~~-Gl~~rKA~~I~~lA~~i~~g~l-~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vl 206 (284)
++|..+ |++..-|..|..+.+ .|.+ -++.+..-.....+..|++|+||||+||..+-
T Consensus 57 ~~l~~LpGIG~~~A~kI~E~l~---tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~ 115 (335)
T 2fmp_A 57 AEAKKLPGVGTKIAEKIDEFLA---TGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFV 115 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHH---HSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHhcCCCCcHHHHHHHHHHHH---hCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHH
Confidence 346665 888776666655544 6766 34555443436789999999999999999774
No 22
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=92.70 E-value=0.088 Score=42.78 Aligned_cols=50 Identities=6% Similarity=0.063 Sum_probs=39.2
Q ss_pred HhcCCHHHHHhc-CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHH
Q 039703 141 VLAVSPQQLREI-GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMI 207 (284)
Q Consensus 141 la~~~~e~Lr~~-Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vll 207 (284)
|-.++.++|+.+ |++..||+.|. .+|... -+++|+.++|||+++-+.+-=
T Consensus 57 iNtA~~~eL~~LpGiGp~~A~~II------~~GpF~-----------svedL~~V~GIg~k~~e~l~~ 107 (134)
T 1s5l_U 57 LNNTNIAAFIQYRGLYPTLAKLIV------KNAPYE-----------SVEDVLNIPGLTERQKQILRE 107 (134)
T ss_dssp TTTSCGGGGGGSTTCTHHHHHHHH------HTCCCS-----------SGGGGGGCTTCCHHHHHHHHH
T ss_pred CcccCHHHHHHCCCCCHHHHHHHH------HcCCCC-----------CHHHHHhCCCCCHHHHHHHHH
Confidence 556788899887 99999999998 366542 256788999999998877653
No 23
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=92.68 E-value=0.093 Score=45.80 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=27.5
Q ss_pred hHHHHHHhhcCCCccHHHHHHHHHHhCCCC
Q 039703 184 DVTMFKMLTSVKGIGAWSVHMFMIFSLHKP 213 (284)
Q Consensus 184 ~ee~~~~L~~l~GIGpwTA~~vllf~l~r~ 213 (284)
.+++++.|..|||||++||.-+.++-+.++
T Consensus 21 l~~LI~~l~~LPGIG~KsA~RlA~hLL~~~ 50 (212)
T 3vdp_A 21 VAKLIEELSKLPGIGPKTAQRLAFFIINMP 50 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 578999999999999999999999988776
No 24
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=92.09 E-value=0.12 Score=45.52 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=27.3
Q ss_pred hHHHHHHhhcCCCccHHHHHHHHHHhCCCC
Q 039703 184 DVTMFKMLTSVKGIGAWSVHMFMIFSLHKP 213 (284)
Q Consensus 184 ~ee~~~~L~~l~GIGpwTA~~vllf~l~r~ 213 (284)
.+++++.|..|||||++||.-+.++-+.++
T Consensus 7 l~~LI~~l~~LPGIG~KSA~RlA~hLL~~~ 36 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRLAFHLFEQP 36 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHhHCCCCCHHHHHHHHHHHHcCC
Confidence 378999999999999999999999988776
No 25
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=91.57 E-value=0.25 Score=45.88 Aligned_cols=55 Identities=24% Similarity=0.418 Sum_probs=37.5
Q ss_pred HHHHhc-CCChHHHHHHHHHHHHHHcCCC-ChhHhhcCChHHHHHHhhcCCCccHHHHHHHH
Q 039703 147 QQLREI-GVSYRKASYLRDLAEKYTDGIL-SDESIVEMDDVTMFKMLTSVKGIGAWSVHMFM 206 (284)
Q Consensus 147 e~Lr~~-Gl~~rKA~~I~~lA~~i~~g~l-~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vl 206 (284)
++|..+ |++...|+-|..+.+ .|.+ .++.|.. .. .+++.|++|+||||+||.-+-
T Consensus 57 ~~l~~lpGIG~~~A~kI~E~l~---tG~~~~le~l~~-~~-p~l~ll~~v~GiG~k~a~~l~ 113 (335)
T 2bcq_A 57 QEACSIPGIGKRMAEKIIEILE---SGHLRKLDHISE-SV-PVLELFSNIWGAGTKTAQMWY 113 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHH---SSSCGGGGGCCT-TH-HHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHhcCCCccHHHHHHHHHHHH---cCCchHHHHHhh-hh-HHHHHHhcCCCcCHHHHHHHH
Confidence 346555 888887776666544 6765 3444432 22 378888899999999999764
No 26
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=91.19 E-value=0.21 Score=46.87 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=39.3
Q ss_pred HHhc-CCChHHHHHHHHHHHHHHcCCC-ChhHhhcCChHHHHHHhhcCCCccHHHHHHHH
Q 039703 149 LREI-GVSYRKASYLRDLAEKYTDGIL-SDESIVEMDDVTMFKMLTSVKGIGAWSVHMFM 206 (284)
Q Consensus 149 Lr~~-Gl~~rKA~~I~~lA~~i~~g~l-~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vl 206 (284)
|..+ |++...|+.|..+.+ .|.+ .++.|..-+....+..|++|+||||+||..+-
T Consensus 63 l~~lpGIG~~~A~kI~E~l~---tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~ 119 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLE---HGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWY 119 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHH---HSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHH---cCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHH
Confidence 5444 788776666655544 6876 34555444567788999999999999999774
No 27
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=90.96 E-value=0.37 Score=42.02 Aligned_cols=46 Identities=28% Similarity=0.290 Sum_probs=31.3
Q ss_pred CCChHHHHHHHHH------HHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCC
Q 039703 153 GVSYRKASYLRDL------AEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHK 212 (284)
Q Consensus 153 Gl~~rKA~~I~~l------A~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r 212 (284)
|++.+.|..|.+. .+++.++ ..+.|+.+||||++||+.+.+---++
T Consensus 95 GIGpk~A~~Ils~~~~~~l~~aI~~~--------------d~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 95 GVGPRLAMAALAVHDAPALRQVLADG--------------NVAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp TCCHHHHHHHHHHSCHHHHHHHHHTT--------------CHHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHhCCHHHHHHHHHhC--------------CHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 8888877666543 2223222 35889999999999999887643333
No 28
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=90.94 E-value=0.11 Score=49.95 Aligned_cols=77 Identities=21% Similarity=0.385 Sum_probs=35.4
Q ss_pred HHHHHhCCCCCCCHHHHhcCCHHHHHhcCCChHHHHHHHHHHHHHHcC---------------------CCChhHhhcCC
Q 039703 125 RFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDG---------------------ILSDESIVEMD 183 (284)
Q Consensus 125 rL~~~~G~~~~p~Pe~la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g---------------------~l~l~~l~~~~ 183 (284)
.|..+|| +...+..++.++|+++||+.+|...|+.+-+.+.+| .++.++|....
T Consensus 533 elkr~yg-----s~savr~~pv~elrelg~sd~~ia~ikgip~~~~~~~~~e~a~~l~er~~~~~~~~~~~~~~~l~~~g 607 (685)
T 4gfj_A 533 ELKRKYG-----SASAVRRLPVEELRELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELG 607 (685)
T ss_dssp HHHHHSS-----CHHHHHHSCHHHHHTTSCCHHHHHHHHTCCHHHHHHSCHHHHHHHHHHHSSSTGGGGSCGGGCCSSSC
T ss_pred HHHHhhc-----cHHHHHhccHHHHHHcCCchhhHHHhcCCcHHHHhhcCHHHHHHHHHHhccHHHHhhcCCHHHHhccC
Confidence 3556676 677888999999999999999999998765544431 12222221100
Q ss_pred ---------hHHHHHHhhcCCCccHHHHHHHH
Q 039703 184 ---------DVTMFKMLTSVKGIGAWSVHMFM 206 (284)
Q Consensus 184 ---------~ee~~~~L~~l~GIGpwTA~~vl 206 (284)
..-.++.|+.++||||+.|+-++
T Consensus 608 ~~~~~~~eik~p~~k~ll~~~gv~p~la~r~~ 639 (685)
T 4gfj_A 608 ATPKAAAEIKGPEFKFLLNIEGVGPKLAERIL 639 (685)
T ss_dssp CGGGC---------------------------
T ss_pred CCHHHHHHhcChhHHHhhcccCCCHHHHHHHH
Confidence 13357889999999999998776
No 29
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=90.80 E-value=0.19 Score=38.59 Aligned_cols=52 Identities=6% Similarity=0.042 Sum_probs=40.2
Q ss_pred HHhcCCHHHHHhc-CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 140 AVLAVSPQQLREI-GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 140 ~la~~~~e~Lr~~-Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
+|-.++.++|..+ |++..+|+.|.. .|.+. -+++|+.++|||+.+.+-+.-+
T Consensus 19 diNtAs~~eL~~lpGIG~~~A~~IV~------~GpF~-----------s~edL~~V~Gig~~~~e~l~~~ 71 (97)
T 3arc_U 19 DLNNTNIAAFIQYRGLYPTLAKLIVK------NAPYE-----------SVEDVLNIPGLTERQKQILREN 71 (97)
T ss_dssp ETTTSCGGGGGGSTTCTTHHHHHHHH------HCCCS-----------SGGGGGGCTTCCHHHHHHHHHT
T ss_pred eCCcCCHHHHhHCCCCCHHHHHHHHH------cCCCC-----------CHHHHHhccCCCHHHHHHHHHH
Confidence 4556788889886 999999998887 46542 2466789999999998887653
No 30
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=89.74 E-value=0.73 Score=46.63 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=29.5
Q ss_pred ChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHH
Q 039703 175 SDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVL 230 (284)
Q Consensus 175 ~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rl 230 (284)
+++.+.+.+ .++|.+++|||+.+|+-+.-|- + +-+.+..+.+|
T Consensus 529 sl~~l~~As----~eeL~~I~GIG~~~A~sI~~ff-~--------~~~~~~~i~~L 571 (667)
T 1dgs_A 529 TMDRLLEAS----LEELIEVEEVGELTARAILETL-K--------DPAFRDLVRRL 571 (667)
T ss_dssp BHHHHTTCC----HHHHHTSTTCCHHHHHHHHHHH-H--------CHHHHHHHHHH
T ss_pred CHHHHHhCC----HHHHHhccCcCHHHHHHHHHHH-h--------hHHHHHHHHHH
Confidence 455555544 4578899999999999998763 2 34455566665
No 31
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=89.35 E-value=1.8 Score=36.80 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=91.4
Q ss_pred hcCchHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHHHhc----C
Q 039703 78 DKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLREI----G 153 (284)
Q Consensus 78 ~~Dp~l~~li~~~~g~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~----G 153 (284)
..||.+..-.+.--|.+.....-.||.|+-.+...-+|+..+.+=.+.|.+.|-+ .+|+.++..+++++..+ |
T Consensus 8 ~~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~---Fd~~~VA~~~e~~ve~Ll~d~~ 84 (183)
T 2ofk_A 8 SQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQ---FDPIRIAAMQEEDVERLLQNTG 84 (183)
T ss_dssp CSCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGG---GCHHHHHTCCHHHHHHHTTCTT
T ss_pred CCChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcC---CCHHHHcCCCHHHHHHHhcCCc
Confidence 3577666666666676666667899999999999999999999999999999854 68999999999987653 5
Q ss_pred C--ChHHHHHHHHHHHHHHc---CCCChhHh-hcC----C-----------------hHHHHHHhh--cCCCccHHHHHH
Q 039703 154 V--SYRKASYLRDLAEKYTD---GILSDESI-VEM----D-----------------DVTMFKMLT--SVKGIGAWSVHM 204 (284)
Q Consensus 154 l--~~rKA~~I~~lA~~i~~---g~l~l~~l-~~~----~-----------------~ee~~~~L~--~l~GIGpwTA~~ 204 (284)
+ .+.|.+.+++=|+.+.+ ...+++.+ ... + .+.+-+.|. +++=|||-|+..
T Consensus 85 IIRnr~KI~A~i~NA~~~l~i~~e~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvGpT~~ya 164 (183)
T 2ofk_A 85 IIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYS 164 (183)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecChHHHHH
Confidence 4 56788888888887765 11233322 111 1 123555563 578888888866
Q ss_pred HHH
Q 039703 205 FMI 207 (284)
Q Consensus 205 vll 207 (284)
+|.
T Consensus 165 fmQ 167 (183)
T 2ofk_A 165 FMQ 167 (183)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 32
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=88.82 E-value=1.8 Score=36.87 Aligned_cols=127 Identities=18% Similarity=0.191 Sum_probs=91.9
Q ss_pred hcCchHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcccCHHHHHHHHHHHHHHhCCCCCCCHHHHhcCCHHHHHhc----C
Q 039703 78 DKDPLLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLREI----G 153 (284)
Q Consensus 78 ~~Dp~l~~li~~~~g~r~~~~~~pfe~Li~~IlsQq~s~~~a~~i~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~----G 153 (284)
..||.+..-.+.--|.+.....-.||.|+-.+...-+||..+.+=.+.+.+.|-+ .+|+.|+..+++++..+ |
T Consensus 8 ~~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~---FD~~~VA~~~e~dve~Ll~d~g 84 (186)
T 2jg6_A 8 TKDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYD---FEPEKVAQMTAQDIDRLMTFPN 84 (186)
T ss_dssp CCCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGG---GCHHHHTTCCHHHHHHHTTCTT
T ss_pred CCChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcC---CCHHHHhCCCHHHHHHHhcCcc
Confidence 4577777666766676666667899999999999999999999999999999864 68999999999887653 5
Q ss_pred C--ChHHHHHHHHHHHHHHc---CCCChhHh-h----------------cCC-----hHHHHHHhh--cCCCccHHHHHH
Q 039703 154 V--SYRKASYLRDLAEKYTD---GILSDESI-V----------------EMD-----DVTMFKMLT--SVKGIGAWSVHM 204 (284)
Q Consensus 154 l--~~rKA~~I~~lA~~i~~---g~l~l~~l-~----------------~~~-----~ee~~~~L~--~l~GIGpwTA~~ 204 (284)
+ .+.|.+.+++=|+.+.+ ...+++.+ . +.+ .+.+-+.|. +++=|||-|+-.
T Consensus 85 IIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvGpt~~Ya 164 (186)
T 2jg6_A 85 IVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFS 164 (186)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeechHHHHH
Confidence 4 56688888887887764 00122221 1 111 124556664 588899988887
Q ss_pred HHH
Q 039703 205 FMI 207 (284)
Q Consensus 205 vll 207 (284)
+|.
T Consensus 165 fmQ 167 (186)
T 2jg6_A 165 FLE 167 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 33
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=88.46 E-value=0.75 Score=39.32 Aligned_cols=43 Identities=26% Similarity=0.272 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHH------HHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHh
Q 039703 153 GVSYRKASYLRDL------AEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFS 209 (284)
Q Consensus 153 Gl~~rKA~~I~~l------A~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~ 209 (284)
|++.++|..|.+. .+.+.++ ..+.|..+||||++||+-+...-
T Consensus 79 GIGpk~A~~iL~~f~~~~l~~aI~~~--------------d~~~L~~vpGIG~K~A~rI~~~l 127 (191)
T 1ixr_A 79 GVGPKVALALLSALPPRLLARALLEG--------------DARLLTSASGVGRRLAERIALEL 127 (191)
T ss_dssp CCCHHHHHHHHHHSCHHHHHHHHHTT--------------CHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhCChHHHHHHHHhC--------------CHHHHHhCCCCCHHHHHHHHHHH
Confidence 8888777666543 2222222 35789999999999999987653
No 34
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=88.41 E-value=0.46 Score=44.89 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=39.2
Q ss_pred HHHhc-CCChHHHHHHHHHHHHHHcCCC-ChhHhhcCChHHHHHHhhcCCCccHHHHHHHH
Q 039703 148 QLREI-GVSYRKASYLRDLAEKYTDGIL-SDESIVEMDDVTMFKMLTSVKGIGAWSVHMFM 206 (284)
Q Consensus 148 ~Lr~~-Gl~~rKA~~I~~lA~~i~~g~l-~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vl 206 (284)
+|..+ |++..-|+-|.. .+..|.+ .++.|..-+....+..|++|+||||+||..+-
T Consensus 81 ~l~~lpGIG~~ia~kI~E---~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly 138 (381)
T 1jms_A 81 DTEGIPCLGDKVKSIIEG---IIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWF 138 (381)
T ss_dssp GGTTCSSCCHHHHHHHHH---HHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHH---HHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHH
Confidence 35554 788765555444 4446876 35555544567788999999999999999774
No 35
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=87.30 E-value=0.93 Score=42.79 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=40.2
Q ss_pred HHHHHHHHHhCCCCCCCHHHHhcCCHHHHHhc-CCChHHHHHHHHHHHHHH
Q 039703 121 SIYTRFVALFNGEDNILPDAVLAVSPQQLREI-GVSYRKASYLRDLAEKYT 170 (284)
Q Consensus 121 ~i~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~-Gl~~rKA~~I~~lA~~i~ 170 (284)
.+.++|+++|| +.+.|++++.+||.++ |+|..||+.|++....+.
T Consensus 326 ~iae~Lv~~FG-----sLq~Il~AS~eEL~~VeGIGe~rAr~IregL~r~~ 371 (377)
T 3c1y_A 326 SIGYNVVRMFK-----TLDQISKASVEDLKKVEGIGEKRARAISESISSLK 371 (377)
T ss_dssp HHHHHHHHHHC-----SHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-----CHHHHHhCCHHHHHhccCccHHHHHHHHHHHHHHh
Confidence 46788999998 7999999999999987 999999999999888765
No 36
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=87.05 E-value=1.1 Score=38.64 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.4
Q ss_pred HHHhhcCCCccHHHHHHHHHH
Q 039703 188 FKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 188 ~~~L~~l~GIGpwTA~~vllf 208 (284)
.+.|+.+||||++||+-+.+.
T Consensus 107 ~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 107 VGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHH
Confidence 578999999999999988754
No 37
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=86.87 E-value=1.8 Score=43.87 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=29.3
Q ss_pred ChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHH
Q 039703 175 SDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVL 230 (284)
Q Consensus 175 ~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rl 230 (284)
+++.|.+.+ .++|.+++|||+.+|+.+.-|- + +-+.+..+.+|
T Consensus 534 sl~~l~~As----~eeL~~i~GIG~~~A~sI~~ff-~--------~~~~~~~i~~L 576 (671)
T 2owo_A 534 TLEALEAAS----IEELQKVPDVGIVVASHVHNFF-A--------EESNRNVISEL 576 (671)
T ss_dssp SHHHHHTCC----HHHHTTSTTCCHHHHHHHHHHH-T--------CHHHHHHHHHH
T ss_pred CHHHHHhCC----HHHHhhcCCCCHHHHHHHHHHH-H--------hHHHHHHHHHH
Confidence 345555444 4679999999999999998763 2 34455555555
No 38
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=86.84 E-value=1.6 Score=32.77 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=40.0
Q ss_pred HHHhcCCHHHHHhc-CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHh
Q 039703 139 DAVLAVSPQQLREI-GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFS 209 (284)
Q Consensus 139 e~la~~~~e~Lr~~-Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~ 209 (284)
-+|-.++.++|..+ |++...|+.|...-. ..|.+ . .++.|..++|||+++++.+.-.+
T Consensus 32 i~iN~a~~~~L~~ipGIG~~~A~~Il~~r~--~~g~f--~---------s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 32 DLLNEGSARDLRSLQRIGPKKAQLIVGWRE--LHGPF--S---------QVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp HHHHHSCHHHHHHSTTCCHHHHHHHHHHHH--HHCCC--S---------SGGGGGGSTTCCHHHHHHHHHHH
T ss_pred eehhhCCHHHHHHCCCCCHHHHHHHHHHHH--hcCCc--C---------CHHHHHhCCCCCHHHHHHHHHCc
Confidence 35666778888876 899887777766522 13544 1 12337899999999999886554
No 39
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=85.25 E-value=1.9 Score=42.62 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=40.2
Q ss_pred HHHhcCCHHHHHhc-CCChHHHHHHHHHHHHHHcCCCCh-hHhhcCChHHHHHHhhcCCCccHHHHHHHHH
Q 039703 139 DAVLAVSPQQLREI-GVSYRKASYLRDLAEKYTDGILSD-ESIVEMDDVTMFKMLTSVKGIGAWSVHMFMI 207 (284)
Q Consensus 139 e~la~~~~e~Lr~~-Gl~~rKA~~I~~lA~~i~~g~l~l-~~l~~~~~ee~~~~L~~l~GIGpwTA~~vll 207 (284)
+.+.+.+.+.+..+ |++..-+.+|..+. .+|.+.+ +.+.. +..+.+..|++++||||++|..++-
T Consensus 45 ~~~~~~~~~~~~~lp~iG~~~~~~i~~~v---~~g~~~l~~~~~~-~~~~~~~~l~~v~GvGpk~A~~~~~ 111 (575)
T 3b0x_A 45 EEIAEKGKEALMELPGVGPDLAEKILEFL---RTGKVRKHEELSR-KVPRGVLEVMEVPGVGPKTARLLYE 111 (575)
T ss_dssp HHHHTTCHHHHHTSTTCCHHHHHHHHHHH---HHSSCHHHHHHHH-HSCHHHHHHHTSTTTCHHHHHHHHH
T ss_pred hhHhhcchhHHHhCCCCCHHHHHHHHHHH---HcCcHHHHhhhhh-hhHHHHHHHhcCCCcCHHHHHHHHH
Confidence 34444332226666 67766556655544 4676643 33332 2245788999999999999988765
No 40
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=85.11 E-value=0.73 Score=32.34 Aligned_cols=45 Identities=27% Similarity=0.257 Sum_probs=28.4
Q ss_pred CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 153 GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 153 Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
|++...|..|. +.+ | +++.+...+ .+.|..++|||+.+|..+..+
T Consensus 21 giG~~~a~~Ll---~~f--g--s~~~l~~a~----~~~L~~i~Gig~~~a~~i~~~ 65 (75)
T 1x2i_A 21 HVSATLARRLL---KHF--G--SVERVFTAS----VAELMKVEGIGEKIAKEIRRV 65 (75)
T ss_dssp TCCHHHHHHHH---HHH--C--SHHHHHHCC----HHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHH---HHc--C--CHHHHHhCC----HHHHhcCCCCCHHHHHHHHHH
Confidence 56655444433 333 2 355555444 456889999999999888765
No 41
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=84.60 E-value=0.67 Score=45.90 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHHHHHcCCCC-hhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 153 GVSYRKASYLRDLAEKYTDGILS-DESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 153 Gl~~rKA~~I~~lA~~i~~g~l~-l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
|++..=+.+ +...+.+|.+. ++.+..-. .+.+..|++|+||||++|..++--
T Consensus 64 ~iG~~~~~~---i~~~v~~g~~~~~~~~~~~~-~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 64 KVGKGIAAE---LSDFARSGTFAPLEAAAGQL-PPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp TCCHHHHHH---HHHHHHHSSCHHHHHHHHHS-CHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred CCChhHHHH---HHHHHcCChHHHHHHHhhhh-HHHHHHHhCCCCcCHHHHHHHHHc
Confidence 555443333 44555567663 23333222 347888999999999999988753
No 42
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=83.43 E-value=0.67 Score=33.07 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=18.7
Q ss_pred HHHHhhcCCCccHHHHHHHHHH
Q 039703 187 MFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 187 ~~~~L~~l~GIGpwTA~~vllf 208 (284)
....|.+|||||+++|..++-+
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHH
Confidence 3567899999999999998864
No 43
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=83.22 E-value=1.1 Score=31.99 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=36.6
Q ss_pred HHHhcCCHHHHHhc-CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHH
Q 039703 139 DAVLAVSPQQLREI-GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFM 206 (284)
Q Consensus 139 e~la~~~~e~Lr~~-Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vl 206 (284)
-++-.++.++|..+ |++...|+.|... . .+ ...++|..++|||+++++-+.
T Consensus 19 idiN~a~~~~L~~ipGIG~~~A~~Il~~-------r-~~---------~s~~eL~~v~Gig~k~~~~i~ 70 (75)
T 2duy_A 19 VSLNEASLEELMALPGIGPVLARRIVEG-------R-PY---------ARVEDLLKVKGIGPATLERLR 70 (75)
T ss_dssp EETTTCCHHHHTTSTTCCHHHHHHHHHT-------C-CC---------SSGGGGGGSTTCCHHHHHHHG
T ss_pred cChhhCCHHHHHhCCCCCHHHHHHHHHH-------c-cc---------CCHHHHHhCCCCCHHHHHHHH
Confidence 35666788888887 9998877766652 1 11 134567899999999998775
No 44
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=82.96 E-value=1.4 Score=32.32 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=29.8
Q ss_pred CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHh
Q 039703 153 GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFS 209 (284)
Q Consensus 153 Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~ 209 (284)
|++...++.|. +.+ | +++.+...+. +.|..++|||+.+|+.+..+-
T Consensus 26 gIG~~~A~~Ll---~~f--g--sl~~l~~a~~----~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 26 SVNKTDSQTLL---TTF--G--SLEQLIAASR----EDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp SCCHHHHHHHH---HHT--C--BHHHHHHCCH----HHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---HHC--C--CHHHHHhCCH----HHHHhCCCCCHHHHHHHHHHH
Confidence 67766444433 222 2 4555655543 568899999999999887653
No 45
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=82.08 E-value=0.89 Score=39.56 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.7
Q ss_pred ChHHHHHHhhcCCCccHHHHHHHHH
Q 039703 183 DDVTMFKMLTSVKGIGAWSVHMFMI 207 (284)
Q Consensus 183 ~~ee~~~~L~~l~GIGpwTA~~vll 207 (284)
+..+++..|.+++||||++|..++-
T Consensus 82 ~Er~lf~~L~sv~GIGpk~A~~Ils 106 (212)
T 2ztd_A 82 ETRDLFLTLLSVSGVGPRLAMAALA 106 (212)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCcCHHHHHHHHH
Confidence 3466889999999999999999885
No 46
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=80.67 E-value=3.3 Score=28.78 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCCCCHHHHhcCCHHHHHhc-CCChHHHHHHHHHH
Q 039703 122 IYTRFVALFNGEDNILPDAVLAVSPQQLREI-GVSYRKASYLRDLA 166 (284)
Q Consensus 122 i~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~-Gl~~rKA~~I~~lA 166 (284)
...+|.+.|| +.+.|..++.++|..+ |++..++..|....
T Consensus 26 ~a~~Ll~~fg-----s~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 26 LARRLLKHFG-----SVERVFTASVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp HHHHHHHHHC-----SHHHHHHCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----CHHHHHhCCHHHHhcCCCCCHHHHHHHHHHH
Confidence 4566777887 5888999999999887 99999888876543
No 47
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=80.60 E-value=0.99 Score=31.45 Aligned_cols=25 Identities=16% Similarity=0.229 Sum_probs=19.8
Q ss_pred HHHhhcCCCccHHHHHHHHHHhCCCC
Q 039703 188 FKMLTSVKGIGAWSVHMFMIFSLHKP 213 (284)
Q Consensus 188 ~~~L~~l~GIGpwTA~~vllf~l~r~ 213 (284)
...|..|||||++....+|-. ||-.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~-Fgs~ 27 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHH-VKNI 27 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHH-CSSH
T ss_pred HhHHHcCCCCCHHHHHHHHHH-cCCH
Confidence 467889999999999988853 5544
No 48
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=79.95 E-value=1.1 Score=32.17 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 153 GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 153 Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
|++...++.|.+ .+ | +++.+.+.+ .++|..++|||+.+|+.+..+
T Consensus 31 gIG~~~A~~Ll~---~f--g--sl~~l~~a~----~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 31 GVGPKRRQMLLK---YM--G--GLQGLRNAS----VEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp TCSSSHHHHHHH---HH--S--CHHHHHHCC----HHHHTTSSSTTSHHHHHHHHH
T ss_pred CCCHHHHHHHHH---Hc--C--CHHHHHHCC----HHHHHHCCCCCHHHHHHHHHH
Confidence 677665555443 33 2 356665554 456889999999999988754
No 49
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=79.93 E-value=1.4 Score=32.71 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=23.3
Q ss_pred hHHHHHHhhcCCCccHHHHHHHHHHhCCCC
Q 039703 184 DVTMFKMLTSVKGIGAWSVHMFMIFSLHKP 213 (284)
Q Consensus 184 ~ee~~~~L~~l~GIGpwTA~~vllf~l~r~ 213 (284)
.......|..|||||++....+|-. |+-.
T Consensus 13 N~~~~s~L~~IpGIG~kr~~~LL~~-FgSl 41 (84)
T 1z00_B 13 NPGPQDFLLKMPGVNAKNCRSLMHH-VKNI 41 (84)
T ss_dssp CHHHHHHHHTCSSCCHHHHHHHHHH-SSCH
T ss_pred cccHHHHHHhCCCCCHHHHHHHHHH-cCCH
Confidence 3567899999999999999998854 5543
No 50
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=79.87 E-value=1.1 Score=38.34 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=21.4
Q ss_pred ChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 183 DDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 183 ~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
...+.+..|.+++||||++|..+|-.
T Consensus 66 ~ek~~f~~L~~v~GIGpk~A~~iL~~ 91 (191)
T 1ixr_A 66 ENLALFELLLSVSGVGPKVALALLSA 91 (191)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 34567778999999999999998853
No 51
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=79.26 E-value=4.2 Score=28.93 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=31.6
Q ss_pred CCCHHHHhcCCHHHHHh-cCCChHHHHHHHHHHHH
Q 039703 135 NILPDAVLAVSPQQLRE-IGVSYRKASYLRDLAEK 168 (284)
Q Consensus 135 ~p~Pe~la~~~~e~Lr~-~Gl~~rKA~~I~~lA~~ 168 (284)
+.|.++|+.++.++|.. .|++..||..|+..|+.
T Consensus 28 i~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 28 VCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp CCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 68999999999999987 59999999999999997
No 52
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=78.81 E-value=4.6 Score=29.67 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCCCCCHHHHhcCCHHHHHhc-CCChHHHHHHHHHH
Q 039703 123 YTRFVALFNGEDNILPDAVLAVSPQQLREI-GVSYRKASYLRDLA 166 (284)
Q Consensus 123 ~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~-Gl~~rKA~~I~~lA 166 (284)
..+|.+.|| +.+.|..++.++|..+ |++..++..|....
T Consensus 45 A~~Ll~~fg-----s~~~l~~as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 45 SQTLLTTFG-----SLEQLIAASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHHHHS-----SHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHCC-----CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 446667787 5788999999999887 89999888876543
No 53
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=78.80 E-value=1.6 Score=32.34 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=29.5
Q ss_pred CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 153 GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 153 Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
|++...++.|. +.+ | +++.+...+. +.|..++|||+.+|+.++.+
T Consensus 39 gIG~~~A~~Ll---~~f--g--s~~~l~~as~----~eL~~i~GIG~~~a~~I~~~ 83 (91)
T 2a1j_B 39 SVNKTDSQTLL---TTF--G--SLEQLIAASR----EDLALCPGLGPQKARRLFDV 83 (91)
T ss_dssp TCCHHHHHHHH---HHH--S--SHHHHHSCCH----HHHHTSSSCCSHHHHHHHHH
T ss_pred CCCHHHHHHHH---HHC--C--CHHHHHhCCH----HHHHhCCCCCHHHHHHHHHH
Confidence 66666444443 333 2 3555655543 56889999999999988765
No 54
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=77.75 E-value=3.3 Score=29.53 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=30.7
Q ss_pred HHHHHHHhCCCCCCCHHHHhcCCHHHHHhc-CCChHHHHHHHHH
Q 039703 123 YTRFVALFNGEDNILPDAVLAVSPQQLREI-GVSYRKASYLRDL 165 (284)
Q Consensus 123 ~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~-Gl~~rKA~~I~~l 165 (284)
..+|.+.|| +.+.|..++.++|..+ |++..++..|...
T Consensus 37 A~~Ll~~fg-----sl~~l~~a~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 37 RQMLLKYMG-----GLQGLRNASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHHHHHHS-----CHHHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred HHHHHHHcC-----CHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Confidence 456667787 5888999999999887 9999988887654
No 55
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=77.22 E-value=4 Score=28.28 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCCCCHHHHhcCCHHHHHhcCCChHH-HHHHHHHH
Q 039703 122 IYTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRK-ASYLRDLA 166 (284)
Q Consensus 122 i~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~Gl~~rK-A~~I~~lA 166 (284)
-..+|..+|| +.+.|..++.|+|..+ ++..+ |+.|....
T Consensus 16 r~~~LL~~Fg-----s~~~i~~As~eeL~~v-ig~~~~A~~I~~~l 55 (63)
T 2a1j_A 16 NCRSLMHHVK-----NIAELAALSQDELTSI-LGNAANAKQLYDFI 55 (63)
T ss_dssp HHHHHHHHCS-----SHHHHHTCCHHHHHHH-HSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----CHHHHHHCCHHHHHHH-cCchHHHHHHHHHH
Confidence 3567788887 7999999999999998 88877 88776543
No 56
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=76.67 E-value=3.3 Score=39.96 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCCCCCHHHHhcCCHHHHHhcCCChHHHHHHHHHHHH
Q 039703 123 YTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRDLAEK 168 (284)
Q Consensus 123 ~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~Gl~~rKA~~I~~lA~~ 168 (284)
.++|.++|| +.+.+..+++++|+.-|++..|++.|+.+-..
T Consensus 481 AeRLLEkFG-----SVe~Vm~AteDELRedGIGekqarrI~gl~~l 521 (685)
T 4gfj_A 481 AERLLKKYG-----GYSKVREAGVEELREDGLTDAQIRELKGLKTL 521 (685)
T ss_dssp HHHHHHHHT-----SHHHHHHSCHHHHHHTTCCHHHHHHHHTCHHH
T ss_pred HHHHHHHhc-----CHHHHHhCCHHHHHHccccHHHHHHHhhHHHH
Confidence 357888998 78999999999999999999999999876443
No 57
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=76.53 E-value=5.1 Score=29.24 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCCCCCHHHHhcCCHHHHHhc-CCChHHHHHHHHHH
Q 039703 123 YTRFVALFNGEDNILPDAVLAVSPQQLREI-GVSYRKASYLRDLA 166 (284)
Q Consensus 123 ~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~-Gl~~rKA~~I~~lA 166 (284)
..+|.+.|| +.+.+..++.++|..+ |++..++..|....
T Consensus 32 A~~Ll~~fg-----sl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 32 SQTLLTTFG-----SLEQLIAASREDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHHHHTC-----BHHHHHHCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCC-----CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 456667787 5788999999999887 99999888876543
No 58
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=76.24 E-value=1.5 Score=37.79 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.4
Q ss_pred hHHHHHHhhcCCCccHHHHHHHHH
Q 039703 184 DVTMFKMLTSVKGIGAWSVHMFMI 207 (284)
Q Consensus 184 ~ee~~~~L~~l~GIGpwTA~~vll 207 (284)
..+++..|.+|+||||++|..+|-
T Consensus 68 ek~~f~~L~~V~GIGpk~A~~iL~ 91 (203)
T 1cuk_A 68 ERTLFKELIKTNGVGPKLALAILS 91 (203)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHh
Confidence 345677899999999999999885
No 59
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=72.66 E-value=9.2 Score=27.19 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=33.4
Q ss_pred CCCHHHHhcCCHHHHHhc-CCChHHHHHHHHHHHHHHc
Q 039703 135 NILPDAVLAVSPQQLREI-GVSYRKASYLRDLAEKYTD 171 (284)
Q Consensus 135 ~p~Pe~la~~~~e~Lr~~-Gl~~rKA~~I~~lA~~i~~ 171 (284)
|-+.+.|+.++.++|..+ ||+..|+.-|+.-|+.+..
T Consensus 27 f~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 27 FSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALA 64 (70)
T ss_dssp CCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 789999999999999985 9999999999999987753
No 60
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=72.51 E-value=9 Score=27.53 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=32.9
Q ss_pred HhcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHH
Q 039703 150 REIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFM 206 (284)
Q Consensus 150 r~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vl 206 (284)
..++|+.|-...|+. .|.-++.+|..++. +.|+.++|+|+++.+-|.
T Consensus 12 e~L~LS~Ra~NcLkr------agI~Tv~dL~~~s~----~dLlki~n~G~kSl~EI~ 58 (73)
T 1z3e_B 12 EELDLSVRSYNCLKR------AGINTVQELANKTE----EDMMKVRNLGRKSLEEVK 58 (73)
T ss_dssp GGSCCBHHHHHHHHH------TTCCBHHHHHTSCH----HHHHTSTTCCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHH------cCCCcHHHHHcCCH----HHHHHcCCCCHHHHHHHH
Confidence 344888773332222 45557888887764 568999999999998765
No 61
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=71.54 E-value=11 Score=34.73 Aligned_cols=43 Identities=14% Similarity=0.071 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 157 RKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 157 rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
-|+..-+..|+.+..-..++.. ...|.+|||||+.+|+.|.=+
T Consensus 34 ~r~~AYr~Aa~~l~~l~~~i~~---------~~~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 34 WRALGYAKAINALKSFHKPVTS---------YQEACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHHHHHHHHHHHHHSCCSCCCC---------HHHHHTSTTCCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhCCccccC---------HHHHhcCCCccHHHHHHHHHH
Confidence 4577888888888764333322 234899999999999988744
No 62
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=71.15 E-value=1.9 Score=42.57 Aligned_cols=44 Identities=32% Similarity=0.277 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHH
Q 039703 153 GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMF 205 (284)
Q Consensus 153 Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~v 205 (284)
|+|.++|..|.+ .|-.++++|... -....|..+||||++|++-+
T Consensus 104 GVGpk~A~~i~~------~G~~s~edL~~a---~~~~~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 104 GLGPKKIRSLWL------AGIDSLERLREA---AESGELAGLKGFGAKSAATI 147 (578)
T ss_dssp TCCHHHHHHHHH------TTCCSHHHHHHH---HHHTTTTTSTTCCHHHHHHH
T ss_pred CcCHHHHHHHHH------cCCCCHHHHHHH---HhhCccccCCCCCHHHHHHH
Confidence 999998887775 276778777531 01237889999999999987
No 63
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=69.45 E-value=8.9 Score=29.90 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=39.8
Q ss_pred CHHHHHhcCCChHHHHHHHHHHHHHHc-CCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHh
Q 039703 145 SPQQLREIGVSYRKASYLRDLAEKYTD-GILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFS 209 (284)
Q Consensus 145 ~~e~Lr~~Gl~~rKA~~I~~lA~~i~~-g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~ 209 (284)
+.++|..+|++..- +..+.+ |.-+.+.+...+ .+.|..++|||+-+|+-++-.+
T Consensus 24 ~I~~L~~~GIg~~~-------i~kL~eAG~~Tve~va~a~----~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 24 PISRLEQCGINAND-------VKKLEEAGFHTVEAVAYAP----KKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp CHHHHHHTTCSHHH-------HHHHHTTCCSSGGGBTSSB----HHHHHTTTTCSTTHHHHHHHHH
T ss_pred cHHHHHhcCCCHHH-------HHHHHHcCcCcHHHHHhCC----HHHHHHccCCCHHHHHHHHHHH
Confidence 56778888999763 333333 666788776664 6789999999999998877554
No 64
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=67.57 E-value=7.8 Score=35.17 Aligned_cols=50 Identities=20% Similarity=0.374 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCCCCC
Q 039703 163 RDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPD 214 (284)
Q Consensus 163 ~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~r~d 214 (284)
..+-+++.+|.++.+..+.. .+--+.+|+.-.|||.+||+-+| ++||.|+
T Consensus 386 eeiermyeegrlseeayraa-veiqlaeltkkegvgrktaerll-rafgnpe 435 (519)
T 2csb_A 386 EEIERMYEEGRLSEEAYRAA-VEIQLAELTKKEGVGRKTAERLL-RAFGNPE 435 (519)
T ss_dssp HHHHHHHHHTSSCHHHHHHH-HHHHHHHHHTSTTCCHHHHHHHH-HHHSSHH
T ss_pred HHHHHHHHcccccHHHHHHH-HHHHHHHHhhhcccchhHHHHHH-HHhCCHH
Confidence 34555666788876655421 23346789999999999999765 6788764
No 65
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=67.46 E-value=3.1 Score=31.21 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=18.0
Q ss_pred HHHhhcCCCccHHHHHHHHHH
Q 039703 188 FKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 188 ~~~L~~l~GIGpwTA~~vllf 208 (284)
...|..|||||+.+|..++-.
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~ 59 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGW 59 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH
Confidence 456889999999999988865
No 66
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=67.16 E-value=2.3 Score=34.45 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=18.3
Q ss_pred HHHHhhcCCCccHHHHHHHHH
Q 039703 187 MFKMLTSVKGIGAWSVHMFMI 207 (284)
Q Consensus 187 ~~~~L~~l~GIGpwTA~~vll 207 (284)
..++|+++|||||..|+-|.-
T Consensus 61 ~~~eL~~LpGiGp~~A~~II~ 81 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIVK 81 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHH
Confidence 457788999999999999993
No 67
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=66.84 E-value=5.9 Score=29.41 Aligned_cols=39 Identities=10% Similarity=-0.060 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHH
Q 039703 159 ASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFM 206 (284)
Q Consensus 159 A~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vl 206 (284)
+......++.+..-.+.+. -.+++..|+|||+++++.+-
T Consensus 37 ~~~Y~KA~~sLk~~P~~i~---------s~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 37 RFVFQKALRSLQRYPLPLR---------SGKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp HHHHHHHHHHHHHCCSCCC---------SHHHHHTCTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCC---------CHHHHHHhhcccHHHHHHHH
Confidence 5556666777776555543 24677899999999998764
No 68
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=66.62 E-value=2 Score=32.82 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=18.5
Q ss_pred HHHhhcCCCccHHHHHHHHHH
Q 039703 188 FKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 188 ~~~L~~l~GIGpwTA~~vllf 208 (284)
.++|+.|||||+..|..|.-.
T Consensus 25 ~~eL~~lpGIG~~~A~~IV~~ 45 (97)
T 3arc_U 25 IAAFIQYRGLYPTLAKLIVKN 45 (97)
T ss_dssp GGGGGGSTTCTTHHHHHHHHH
T ss_pred HHHHhHCCCCCHHHHHHHHHc
Confidence 468899999999999999873
No 69
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=66.58 E-value=5.2 Score=31.25 Aligned_cols=46 Identities=20% Similarity=0.092 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCCCCCHHHHhcCCHHHHHh-cCCChHHHHHHHHHHHHHHc
Q 039703 122 IYTRFVALFNGEDNILPDAVLAVSPQQLRE-IGVSYRKASYLRDLAEKYTD 171 (284)
Q Consensus 122 i~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~-~Gl~~rKA~~I~~lA~~i~~ 171 (284)
...+|.+. | |.+.+.|+.+++++|.. .|++..|+.-|+..|+.+..
T Consensus 37 ~i~kL~eA-G---~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~~ 83 (114)
T 1b22_A 37 DVKKLEEA-G---FHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVP 83 (114)
T ss_dssp HHHHHHTT-C---CSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHc-C---cCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHcc
Confidence 45566655 5 57999999999999986 69999999999999998864
No 70
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=64.12 E-value=3 Score=36.07 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=19.2
Q ss_pred HHHHhhcCCCccHHHHHHHHHHh
Q 039703 187 MFKMLTSVKGIGAWSVHMFMIFS 209 (284)
Q Consensus 187 ~~~~L~~l~GIGpwTA~~vllf~ 209 (284)
..++|..|||||+.+|..|+-+-
T Consensus 130 ~~~eL~~LpGIG~k~A~~IIeyR 152 (205)
T 2i5h_A 130 RMHQLELLPGVGKKMMWAIIEER 152 (205)
T ss_dssp SSBGGGGSTTCCHHHHHHHHHHH
T ss_pred CHHHHhcCCCcCHHHHHHHHHHH
Confidence 45678899999999999988653
No 71
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=63.11 E-value=5.6 Score=33.90 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=26.4
Q ss_pred CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 153 GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 153 Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
|++...|+.|.+ .+ -+++.+.+.+. +.|..++|||+++|+.+.-+
T Consensus 169 gVg~~~a~~Ll~---~f----gs~~~l~~a~~----e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 169 GIGRRTAERILE---RF----GSLERFFTASK----AEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp TCCHHHHHHHHH---HH----SSHHHHTTCCH----HHHHHSTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH---Hc----CCHHHHHhCCH----HHHhhCCCCCHHHHHHHHHH
Confidence 666654444433 32 12455555443 35778888888888877654
No 72
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=62.64 E-value=4.9 Score=39.56 Aligned_cols=46 Identities=28% Similarity=0.192 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHH
Q 039703 153 GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFM 206 (284)
Q Consensus 153 Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vl 206 (284)
|+|.++|..|.+- -|-.++++|... -....|.++||||++||+-++
T Consensus 100 GvGpk~A~~~~~~-----lg~~~~~~l~~a---~~~~~l~~~~GiG~k~a~~i~ 145 (575)
T 3b0x_A 100 GVGPKTARLLYEG-----LGIDSLEKLKAA---LDRGDLTRLKGFGPKRAERIR 145 (575)
T ss_dssp TTCHHHHHHHHHT-----SCCCSHHHHHHH---HHHTGGGGSTTCCHHHHHHHH
T ss_pred CcCHHHHHHHHHh-----cCCCCHHHHHHH---HHcCCcccCCCCCccHHHHHH
Confidence 8998866555331 155566665421 011238899999999999874
No 73
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=61.58 E-value=11 Score=34.71 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=32.9
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 152 IGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 152 ~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
.|-..-|+..-+..|..+..-..++.. ...|.+|||||+.+|+.|.=+
T Consensus 29 ~~~~~~rv~AYr~Aa~~l~~l~~~i~~---------~~~l~~LpGIG~~~A~kI~E~ 76 (335)
T 2fmp_A 29 VSQAIHKYNAYRKAASVIAKYPHKIKS---------GAEAKKLPGVGTKIAEKIDEF 76 (335)
T ss_dssp TTCCHHHHHHHHHHHHHHHHCSSCCCC---------HHHHHTSTTCCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhCCccccC---------HHHHhcCCCCcHHHHHHHHHH
Confidence 444545677888888887763333321 234899999999999988744
No 74
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=61.12 E-value=9.7 Score=28.01 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCCCCCHHHHhcCCHHHHHhcCCChHH-HHHHHHHH
Q 039703 123 YTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRK-ASYLRDLA 166 (284)
Q Consensus 123 ~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~Gl~~rK-A~~I~~lA 166 (284)
..+|..+|| +.+.|..++.|+|..+ ++... |+.|....
T Consensus 31 ~~~LL~~Fg-----Sl~~i~~AS~eEL~~v-ig~~~~A~~I~~~l 69 (84)
T 1z00_B 31 CRSLMHHVK-----NIAELAALSQDELTSI-LGNAANAKQLYDFI 69 (84)
T ss_dssp HHHHHHHSS-----CHHHHHHSCHHHHHHH-HSCHHHHHHHHHHH
T ss_pred HHHHHHHcC-----CHHHHHHCCHHHHHHH-hCchHHHHHHHHHH
Confidence 567788887 7999999999999998 88776 77776543
No 75
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=60.70 E-value=4.7 Score=41.50 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=39.5
Q ss_pred cCCHHHHHh-cCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHh
Q 039703 143 AVSPQQLRE-IGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFS 209 (284)
Q Consensus 143 ~~~~e~Lr~-~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~ 209 (284)
.++.++|.. .|++.++|+.|...=. ..|.+. -++.|..++|||+++.+.+.-|.
T Consensus 504 tAs~~~L~~v~GiG~~~A~~Iv~yR~--~~G~f~-----------sr~~L~~V~giG~k~~ekl~~FL 558 (785)
T 3bzc_A 504 TASAALLARISGLNSTLAQNIVAHRD--ANGAFR-----------TRDELKKVSRLGEKTFEQAAGFL 558 (785)
T ss_dssp TCCHHHHHTSTTCCHHHHHHHHHHHH--HHCCCS-----------SGGGGGGSTTCCHHHHHHHGGGE
T ss_pred cCCHHHHhhcCCCCHHHHHHHHHHHH--hcCCCC-----------CHHHHHhcCCCCHHHHHHhhheE
Confidence 356778876 4999999999877532 356552 24667799999999998876554
No 76
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=60.29 E-value=9.5 Score=35.45 Aligned_cols=92 Identities=8% Similarity=0.025 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH-hCCCCCcccccCh---HHHHHHH
Q 039703 153 GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF-SLHKPDVLPVGDL---GVRKGLQ 228 (284)
Q Consensus 153 Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf-~l~r~dvfPv~D~---~v~r~~~ 228 (284)
| ..-|+..-+..|..+..-..++..+ ..|.+|||||+.+|+.|.=+ .-|....+ .++ -+.+++.
T Consensus 35 g-~~~r~~AYr~Aa~~l~~l~~~i~~~---------~~l~~lpGIG~~~A~kI~E~l~tG~~~~l--e~L~~d~~~~~l~ 102 (360)
T 2ihm_A 35 A-NEGRLLSFSRAASVLKSLPCPVASL---------SQLHGLPYFGEHSTRVIQELLEHGTCEEV--KQVRCSERYQTMK 102 (360)
T ss_dssp T-CHHHHHHHHHHHHHHHHCSSCCCSG---------GGGTTCTTCCHHHHHHHHHHHHHSCCHHH--HHHHHSHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHHhCCcccCCH---------HHHhcCCCCCHHHHHHHHHHHHcCChHHH--HHHhcccchHHHH
Confidence 5 5556788888888887643333322 23899999999999988733 34554322 122 3344555
Q ss_pred HHhCCCCCCCHHHHHHHHHhcCChhHHHHHH
Q 039703 229 VLYGLKELPGALKMEEVCEKWKPYRSVGSWY 259 (284)
Q Consensus 229 rly~~~~~~~~~~~~~~~e~~~Pyrs~a~~y 259 (284)
.++.... +.++..+.+.+. .++++..+.
T Consensus 103 ~l~~I~G-vG~kta~~l~~~--Gi~tledL~ 130 (360)
T 2ihm_A 103 LFTQVFG-VGVKTANRWYQE--GLRTLDELR 130 (360)
T ss_dssp HHHTSTT-CCHHHHHHHHHT--TCCSHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHc--CCCCHHHHH
Confidence 5555432 345555666544 566665544
No 77
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=58.48 E-value=15 Score=34.43 Aligned_cols=90 Identities=8% Similarity=-0.006 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH-hCCCCCcccccCh---HHHHHHHHH
Q 039703 155 SYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF-SLHKPDVLPVGDL---GVRKGLQVL 230 (284)
Q Consensus 155 ~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf-~l~r~dvfPv~D~---~v~r~~~rl 230 (284)
..-|+..-+..|..+..-..++..+ ..|..|||||+.+|+.|.=+ .-|....+- ++ -+.+++..+
T Consensus 55 ~~~rv~AYr~Aa~~l~~l~~~i~~~---------~~l~~lpGIG~~ia~kI~E~l~tG~~~~le--~l~~d~~~~~l~~l 123 (381)
T 1jms_A 55 NEGSCLAFMRASSVLKSLPFPITSM---------KDTEGIPCLGDKVKSIIEGIIEDGESSEAK--AVLNDERYKSFKLF 123 (381)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCCSG---------GGGTTCSSCCHHHHHHHHHHHHHSSCHHHH--HHHHCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCccccCH---------HHHhcCCCCcHHHHHHHHHHHHcCCcHHHH--HHhcCcchhHHHHH
Confidence 5456888888888887643333322 23899999999999988743 344442211 11 223344444
Q ss_pred hCCCCCCCHHHHHHHHHhcCChhHHHHH
Q 039703 231 YGLKELPGALKMEEVCEKWKPYRSVGSW 258 (284)
Q Consensus 231 y~~~~~~~~~~~~~~~e~~~Pyrs~a~~ 258 (284)
+.... +.++..+.+.+. .++++..+
T Consensus 124 ~~I~G-vGpk~a~~ly~~--Gi~tledL 148 (381)
T 1jms_A 124 TSVFG-VGLKTAEKWFRM--GFRTLSKI 148 (381)
T ss_dssp HTSTT-CCHHHHHHHHHT--TCCSHHHH
T ss_pred HccCC-CCHHHHHHHHHc--CCCcHHHH
Confidence 44422 234555555443 45554443
No 78
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=55.42 E-value=29 Score=24.84 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.3
Q ss_pred CCHHHHhcCCHHHHHhcCCCh
Q 039703 136 ILPDAVLAVSPQQLREIGVSY 156 (284)
Q Consensus 136 p~Pe~la~~~~e~Lr~~Gl~~ 156 (284)
-+.+.|..++.++|+++|+..
T Consensus 32 d~~~~l~~lt~~DL~~lGI~~ 52 (81)
T 1ucv_A 32 SSLGMVLRMNAQDVRALGITL 52 (81)
T ss_dssp CBHHHHTTCCHHHHHHHTCCC
T ss_pred ChHHHHHHcCHHHHHhCCCCC
Confidence 348999999999999999874
No 79
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=54.52 E-value=2.6 Score=37.25 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHhhcCCCccHHHHHHHHHHhCC
Q 039703 187 MFKMLTSVKGIGAWSVHMFMIFSLH 211 (284)
Q Consensus 187 ~~~~L~~l~GIGpwTA~~vllf~l~ 211 (284)
....|.+|+||||++|..++-.+++
T Consensus 13 ~~~~L~~IpGIGpk~a~~Ll~~gf~ 37 (241)
T 1vq8_Y 13 EYTELTDISGVGPSKAESLREAGFE 37 (241)
T ss_dssp -------------------------
T ss_pred chhHHhcCCCCCHHHHHHHHHcCCC
Confidence 3445666666666666655544333
No 80
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=53.14 E-value=14 Score=28.93 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=30.3
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccC---hHHHHHHHHH
Q 039703 186 TMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGD---LGVRKGLQVL 230 (284)
Q Consensus 186 e~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D---~~v~r~~~rl 230 (284)
.+.-.|+.|.|||+.+|..|+-.+-=+++. -++| -.+.++...+
T Consensus 13 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~~-r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 13 HAVIALTSIYGVGKTRSKAILAAAGIAEDV-KISELSEGQIDTLRDEV 59 (114)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHHTTCCTTC-CSTTCCHHHHHHHHHHH
T ss_pred EeHhhHhhhcCcCHHHHHHHHHHcCcCccc-CcccCCHHHHHHHHHHH
Confidence 367789999999999999999765444443 3333 4455555554
No 81
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=52.39 E-value=24 Score=25.67 Aligned_cols=53 Identities=19% Similarity=0.334 Sum_probs=35.6
Q ss_pred HhcCCHHHHHhcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHH
Q 039703 141 VLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFM 206 (284)
Q Consensus 141 la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vl 206 (284)
++..+.++ ++|+-|=...|+. .|.-++.+|..++. +.|+.++|+|+++.+-|.
T Consensus 13 ~l~~~Ie~---L~LS~Ra~NcLk~------agI~Tv~dL~~~se----~dLlki~n~G~kSl~EI~ 65 (79)
T 3gfk_B 13 VLEMTIEE---LDLSVRSYNCLKR------AGINTVQELANKTE----EDMMKVRNLGRKSLEEVK 65 (79)
T ss_dssp GGGCBGGG---SCCBHHHHHHHHH------TTCCBHHHHTTCCH----HHHTTSTTCHHHHHHHHH
T ss_pred HhcCcHHH---hCCCHHHHHHHHH------hCCCCHHHHHhCCH----HHHHHcCCCCHhHHHHHH
Confidence 44445444 4898772222221 35557888887764 568999999999998775
No 82
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=51.63 E-value=6.4 Score=32.21 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=29.4
Q ss_pred HHHHhhcCCCccHHHHHHHHHHhCCCCCcccccCh---HHHHHHHHH
Q 039703 187 MFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDL---GVRKGLQVL 230 (284)
Q Consensus 187 ~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~---~v~r~~~rl 230 (284)
+.-.|+.|+|||+.+|..|+-.+-=+++. -++|+ .+.++...+
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~gid~~~-r~g~Lt~~ei~~l~~~i 73 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKADVDLHK-RAGELTQEELERIVQIM 73 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHHTCCTTS-CSSSCCHHHHHHHHHHH
T ss_pred hHhhHhhhcCCCHHHHHHHHHHcCCCCCc-eeccCCHHHHHHHHHHH
Confidence 55679999999999999999766444443 34443 455555444
No 83
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=50.85 E-value=29 Score=29.35 Aligned_cols=40 Identities=13% Similarity=0.348 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCCCCHHHHhcCCHHHHHhc-CCChHHHHHHHHH
Q 039703 121 SIYTRFVALFNGEDNILPDAVLAVSPQQLREI-GVSYRKASYLRDL 165 (284)
Q Consensus 121 ~i~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~-Gl~~rKA~~I~~l 165 (284)
+...+|.+.|| +++.+..++.++|..+ |++..+|+.|...
T Consensus 173 ~~a~~Ll~~fg-----s~~~l~~a~~e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 173 RTAERILERFG-----SLERFFTASKAEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHHHHHHHHS-----SHHHHTTCCHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcC-----CHHHHHhCCHHHHhhCCCCCHHHHHHHHHH
Confidence 34456777887 6889999999999886 8999988887654
No 84
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=50.43 E-value=9.5 Score=31.38 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=30.9
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHhCCCCCcccccCh---HHHHHHHHH
Q 039703 185 VTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDL---GVRKGLQVL 230 (284)
Q Consensus 185 ee~~~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~---~v~r~~~rl 230 (284)
..+.-.|+.|+|||+.+|..|+--+-=+++. -++|+ .+.++...+
T Consensus 24 k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~-r~g~Lt~~ei~~l~~~i 71 (152)
T 3iz6_M 24 QKIMFALTSIKGVGRRFSNIVCKKADIDMNK-RAGELSAEEMDRLMAVV 71 (152)
T ss_dssp SBHHHHHTTSTTCCHHHHHHHHHHHTCCSSS-BTTTSCHHHHHHHHHHH
T ss_pred cEeHhhhhhccCcCHHHHHHHHHHcCCCCCc-EeCcCCHHHHHHHHHHH
Confidence 3477899999999999999999766444443 44443 555554444
No 85
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.50 E-value=9.7 Score=31.17 Aligned_cols=29 Identities=28% Similarity=0.217 Sum_probs=23.5
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHhCCCCC
Q 039703 186 TMFKMLTSVKGIGAWSVHMFMIFSLHKPD 214 (284)
Q Consensus 186 e~~~~L~~l~GIGpwTA~~vllf~l~r~d 214 (284)
.+.-.|+.|+|||+.+|..|+-.+-=+++
T Consensus 20 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~ 48 (148)
T 3j20_O 20 QLRWALTAIKGIGINFATMVCRVAGLDPF 48 (148)
T ss_dssp CHHHHHHHSTTCCHHHHHHHHHHHTCCSS
T ss_pred EehhhhhhccCcCHHHHHHHHHHhCCCCC
Confidence 36788999999999999999976644443
No 86
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=48.14 E-value=35 Score=25.24 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=36.1
Q ss_pred HHhcCCHHHHHhcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHH
Q 039703 140 AVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFM 206 (284)
Q Consensus 140 ~la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vl 206 (284)
.++..+.++| +|+-|=...|+ ..|.-++.+|..++. +.|+.++|+|+++.+-|.
T Consensus 8 ~~l~~~I~~L---~LSvRa~NcLk------ragI~Tv~dL~~~se----~dLlki~n~G~KSl~EI~ 61 (86)
T 3k4g_A 8 PILLRPVDDL---ELTVRSANCLX------AEAIHYIGDLVQRTE----VELLXTPNLGXXSLTEIX 61 (86)
T ss_dssp GGGGSBGGGG---CCCHHHHHHHH------HTTCCBHHHHHHSCH----HHHHTSTTCCHHHHHHHH
T ss_pred HHHhCcHHHh---CCCHHHHHHHH------HcCCCcHHHHHhCCH----HHHhhccccCcccHHHHH
Confidence 3445554554 88877222222 135557888877764 568999999999998876
No 87
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=48.02 E-value=3.8 Score=36.18 Aligned_cols=50 Identities=32% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHhc-CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHH
Q 039703 148 QLREI-GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMI 207 (284)
Q Consensus 148 ~Lr~~-Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vll 207 (284)
+|..+ |++..++..|... |.-+++.|.. ...+.|..++|||+++|+-++.
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~------gf~sve~L~~----a~~~eL~~v~GIG~ktAe~I~~ 66 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREA------GFESVEDVRG----ADQSALADVSGIGNALAARIKA 66 (241)
T ss_dssp -------------------------------------------------------------
T ss_pred HHhcCCCCCHHHHHHHHHc------CCCCHHHHHh----CCHHHHHhccCCCHHHHHHHHH
Confidence 44443 8888877777653 3334455533 3467889999999999998854
No 88
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=45.11 E-value=13 Score=30.68 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=22.8
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHhCCCCC
Q 039703 186 TMFKMLTSVKGIGAWSVHMFMIFSLHKPD 214 (284)
Q Consensus 186 e~~~~L~~l~GIGpwTA~~vllf~l~r~d 214 (284)
.+.-.|+.|+|||+.+|..|+-.+-=+++
T Consensus 27 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~ 55 (155)
T 2xzm_M 27 ITPIALTGIRGIGRRFAYIICKVLKIDPN 55 (155)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHTTCCSS
T ss_pred EEEEeeecccccCHHHHHHHHHHcCCCcc
Confidence 36678999999999999999876533343
No 89
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=43.65 E-value=47 Score=26.67 Aligned_cols=71 Identities=13% Similarity=0.187 Sum_probs=41.9
Q ss_pred CCHHHHhcCCHHHHHhcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHhCC
Q 039703 136 ILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLH 211 (284)
Q Consensus 136 p~Pe~la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~l~ 211 (284)
.+.+.+..++.++|.++|+... ..-+.+...+.+=... +.+...+...+.++|.+| |.+.++-.+. -.++.
T Consensus 34 ~d~~~l~~lt~~DL~~lGIt~~--gHrkkil~ai~~L~~~-~~~~~~~p~~v~~WL~~i-gL~qY~~~F~-~~g~d 104 (149)
T 3sei_A 34 YDLPTISRMTPEDLTAIGVTKP--GHRKKIAAEISGLSIP-DWLPEHKPANLAVWLSMI-GLAQYYKVLV-DNGYE 104 (149)
T ss_dssp CCHHHHTTCCHHHHHHTTCCSH--HHHHHHHHHHHTCCCC-CCSCSSCCSCHHHHHHHT-TCGGGHHHHH-HTTCC
T ss_pred CCHHHHccCCHHHHHHcCCCCH--HHHHHHHHHHHHHHhc-cccCCCCcccHHHHHHHc-CchhhHHHHH-HCCCc
Confidence 4588899999999999998742 1112233333321110 112223445688899888 8887776443 44554
No 90
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=42.85 E-value=43 Score=23.47 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHHHHHHc-CCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHHh
Q 039703 153 GVSYRKASYLRDLAEKYTD-GILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFS 209 (284)
Q Consensus 153 Gl~~rKA~~I~~lA~~i~~-g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf~ 209 (284)
|++.. .+..+.+ |.-+++++...+ .+.|..|+||+.-.|+-+.+-+
T Consensus 14 Gi~~~-------~~~kL~e~Gi~TvedlA~~~----~~eL~~i~gise~kA~~ii~aA 60 (70)
T 1wcn_A 14 GVDRD-------LAFKLAARGVCTLEDLAEQG----IDDLADIEGLTDEKAGALIMAA 60 (70)
T ss_dssp TCCHH-------HHHHHHTTTCCSHHHHHTSC----HHHHHTSSSCCHHHHHHHHHHH
T ss_pred CCCHH-------HHHHHHHcCCCcHHHHHcCC----HHHHHHccCCCHHHHHHHHHHH
Confidence 77755 4445554 666888888775 4667789999999999887655
No 91
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=42.61 E-value=15 Score=38.99 Aligned_cols=45 Identities=16% Similarity=-0.018 Sum_probs=32.6
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 152 IGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 152 ~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
+|+|.+||+.|...-+. .+|.+. -++.|..++|||+++-+-..-|
T Consensus 723 ~GlGp~kA~~Iv~~r~~-~~G~f~-----------sr~~L~~v~~iG~k~fe~~agf 767 (1030)
T 3psf_A 723 SGFGKRKAIDFLQSLQR-LNEPLL-----------ARQQLITHNILHKTIFMNSAGF 767 (1030)
T ss_dssp TTCCHHHHHHHHHHHHH-TCSCCC-----------CTTHHHHTTSSCHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH-hCCCCC-----------CHHHHHhcCCccHHHHHhccCe
Confidence 69999999998764431 246552 2567788999999998766544
No 92
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=41.31 E-value=19 Score=38.81 Aligned_cols=45 Identities=16% Similarity=-0.018 Sum_probs=33.2
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 152 IGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 152 ~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
+|+|.+||+.|...-+. .+|.+. -++.|..++|||+++-+-..-|
T Consensus 720 ~GlGp~kA~~Iv~~r~~-~~G~f~-----------sr~~L~~v~~iG~k~fe~~agf 764 (1219)
T 3psi_A 720 SGFGKRKAIDFLQSLQR-LNEPLL-----------ARQQLITHNILHKTIFMNSAGF 764 (1219)
T ss_dssp TTCCHHHHHHHHHHHHH-HCSCCC-----------CTTHHHHTTCSCHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHH-hCCCCC-----------CHHHHhhCCCccHHHHHhcccc
Confidence 69999999998765431 356653 2567888999999998766544
No 93
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=38.08 E-value=21 Score=33.54 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=22.1
Q ss_pred HHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHH
Q 039703 165 LAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMF 205 (284)
Q Consensus 165 lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~v 205 (284)
+|+.+.+..-+++.+.+.+ .++|..+.|||+..|..|
T Consensus 327 iae~Lv~~FGsLq~Il~AS----~eEL~~VeGIGe~rAr~I 363 (377)
T 3c1y_A 327 IGYNVVRMFKTLDQISKAS----VEDLKKVEGIGEKRARAI 363 (377)
T ss_dssp HHHHHHHHHCSHHHHTTCC----HHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhCC----HHHHHhccCccHHHHHHH
Confidence 3555555444566665544 355677777777777654
No 94
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=37.61 E-value=13 Score=29.66 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=22.0
Q ss_pred HHHHhhcCCCccHHHHHHHHHHhCCCCC
Q 039703 187 MFKMLTSVKGIGAWSVHMFMIFSLHKPD 214 (284)
Q Consensus 187 ~~~~L~~l~GIGpwTA~~vllf~l~r~d 214 (284)
+.-.|+.|.|||+.+|..|+-.+-=.++
T Consensus 15 v~~aLt~I~GIG~~~A~~I~~~~gi~~~ 42 (126)
T 2vqe_M 15 VDVALTYIYGIGKARAKEALEKTGINPA 42 (126)
T ss_dssp HHHHHTTSSSCCSHHHHHHTTTTTCCTT
T ss_pred eeeehhccccccHHHHHHHHHHcCCCcc
Confidence 6678999999999999999865433343
No 95
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=37.45 E-value=38 Score=29.40 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCCCCCHHHHhcCCHHHHHhcCCCh-HHHHHHHH
Q 039703 123 YTRFVALFNGEDNILPDAVLAVSPQQLREIGVSY-RKASYLRD 164 (284)
Q Consensus 123 ~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~Gl~~-rKA~~I~~ 164 (284)
.++|.++|| +.+.|.+++.|+|..+ ++. ..|+.|.+
T Consensus 181 ak~Ll~~Fg-----Sl~~i~~As~EeL~~V-IG~~~~A~~I~~ 217 (220)
T 2nrt_A 181 KKKLIEHFG-----SLENIRSASLEEIARV-IGSTEIARRVLD 217 (220)
T ss_dssp HHHHHHHHC-----SHHHHHTSCHHHHHHH-HTCHHHHHHHHH
T ss_pred HHHHHHHcC-----CHHHHHhCCHHHHHHH-hChHHHHHHHHH
Confidence 456677776 7889999999999998 888 77777654
No 96
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=34.87 E-value=22 Score=30.89 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=20.3
Q ss_pred HHHHhhcCCCccHHHHHHHHHHhCCCC
Q 039703 187 MFKMLTSVKGIGAWSVHMFMIFSLHKP 213 (284)
Q Consensus 187 ~~~~L~~l~GIGpwTA~~vllf~l~r~ 213 (284)
....|..|||||+.++..++-. ||-.
T Consensus 166 ~~s~LdgIpGIG~k~ak~Ll~~-FgSl 191 (220)
T 2nrt_A 166 LRSVLDNVPGIGPIRKKKLIEH-FGSL 191 (220)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH-HCSH
T ss_pred ccccccCCCCcCHHHHHHHHHH-cCCH
Confidence 4567889999999999988753 5533
No 97
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=32.86 E-value=9.2 Score=33.44 Aligned_cols=37 Identities=8% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCCHHHHhcCCHHHHHhcCCChHHHHHHHH
Q 039703 123 YTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRKASYLRD 164 (284)
Q Consensus 123 ~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~~Gl~~rKA~~I~~ 164 (284)
.++|.+.|| +.+.|.+++.|+|..+|++...|+.|.+
T Consensus 186 ak~Ll~~FG-----Sl~~i~~As~eeL~~VGIG~~~A~~I~~ 222 (226)
T 3c65_A 186 KKALLNYFG-----SVKKMKEATVEELQRANIPRAVAEKIYE 222 (226)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHhC-----CHHHHHhCCHHHHHHcCCCHHHHHHHHH
Confidence 345666666 6778889999999888999887777754
No 98
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=32.40 E-value=19 Score=32.49 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=13.1
Q ss_pred hcCCCccHHHHHHHHH
Q 039703 192 TSVKGIGAWSVHMFMI 207 (284)
Q Consensus 192 ~~l~GIGpwTA~~vll 207 (284)
-++||||++||--++-
T Consensus 206 PGVpGIG~KTA~kLL~ 221 (290)
T 1exn_A 206 RGVEGIGAKRGYNIIR 221 (290)
T ss_dssp CCCTTCCHHHHHHHHH
T ss_pred CCCCcCCHhHHHHHHH
Confidence 3699999999977664
No 99
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=32.16 E-value=1.1e+02 Score=28.53 Aligned_cols=46 Identities=22% Similarity=0.137 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCCCCHHHHhcCCHHHHHh-cCCChHHHHHHHHHHHHHHc
Q 039703 122 IYTRFVALFNGEDNILPDAVLAVSPQQLRE-IGVSYRKASYLRDLAEKYTD 171 (284)
Q Consensus 122 i~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~-~Gl~~rKA~~I~~lA~~i~~ 171 (284)
..++|.+. | +.+.++|+.+++.+|.. +|++..|+.-|+..|+.+..
T Consensus 95 ~~~~L~~a-g---~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~~~~ 141 (400)
T 3lda_A 95 DVKKLRES-G---LHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVP 141 (400)
T ss_dssp HHHHHHHT-T---CCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHc-C---CCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 45666655 5 47999999999999975 69999999999888887665
No 100
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=32.14 E-value=49 Score=25.07 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=31.8
Q ss_pred hcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHH
Q 039703 151 EIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFM 206 (284)
Q Consensus 151 ~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vl 206 (284)
.++|+-|=...|+ ..|.-++.+|..++. +.|+.++|+|+++.+-|.
T Consensus 28 ~L~LSvRs~NcLk------ragI~Tv~dL~~~se----~dLlki~n~G~KSl~EI~ 73 (98)
T 1coo_A 28 DLELTVRSANCLK------AEAIHYIGDLVQRTE----VELLKTPNLGKKSLTEIK 73 (98)
T ss_dssp GGTCCTTTHHHHH------TTTCCBHHHHHTSCH----HHHTTSTTCCHHHHHHHH
T ss_pred HhCCCHHHHHHHH------HcCCCcHHHHHhCCH----HHHHhcCCCCHHHHHHHH
Confidence 4488877222222 135557888887764 568999999999998765
No 101
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.00 E-value=29 Score=25.66 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=30.4
Q ss_pred CHHHHhcCCHHH----HHhcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHH
Q 039703 137 LPDAVLAVSPQQ----LREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFK 189 (284)
Q Consensus 137 ~Pe~la~~~~e~----Lr~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~ 189 (284)
-|.+|..++.+| ||-+||+.. ++..|.+..++=.-|.+++.|.+.+
T Consensus 11 pP~dLs~lSv~EVs~~Lr~igL~e~-------vv~~F~~e~IDG~lL~~L~ee~L~e 60 (84)
T 2dkz_A 11 PPADLSGLSIEEVSKSLRFIGLSED-------VISFFVTEKIDGNLLVQLTEEILSE 60 (84)
T ss_dssp CCSCCSSCCHHHHHHHGGGTCCCHH-------HHHHHHTTTCCHHHHHHCCHHHHHH
T ss_pred CchhhhhcCHHHHHHHHHHcCCcHH-------HHHHHHHHccchHHHHhCCHHHHHh
Confidence 356778888887 456788864 5566666667666666776655444
No 102
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=29.79 E-value=82 Score=33.38 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=41.0
Q ss_pred HHhcCCHHHHHhcCCCh-H-------HHHHHHHHHHHHHc-CCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 140 AVLAVSPQQLREIGVSY-R-------KASYLRDLAEKYTD-GILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 140 ~la~~~~e~Lr~~Gl~~-r-------KA~~I~~lA~~i~~-g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
.+..+++.++.++|++. + -.+.|..+..-+++ -.+++... ....-....|..|+||||..|+.++-+
T Consensus 661 Elvki~pkdi~sigvg~yQhdv~q~~L~~~L~~vv~d~VN~vGVdiNtA--~~~~~s~~lL~~v~GlGp~kA~~Iv~~ 736 (1030)
T 3psf_A 661 EYANLTSEEVRSLSIHPHQNLLSSEQLSWALETAFVDIVNLVSVEVNKA--TDNNYYASALKYISGFGKRKAIDFLQS 736 (1030)
T ss_dssp HHHTSCHHHHHTSCCCTTGGGSCHHHHHHHHHHHHHHHHHHHCEEHHHH--HTCHHHHTTGGGSTTCCHHHHHHHHHH
T ss_pred HHhccCcccceeeeccccccccCHHHHHHHHHHHHHhhccccCccHHHh--hcCcCCHHHHhhCCCCCHHHHHHHHHH
Confidence 46778888888888873 2 23334444333333 12333211 111225788999999999999988753
No 103
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=29.78 E-value=1e+02 Score=22.41 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=30.3
Q ss_pred CCCHHHHhcCCHHHHHh-cCCChHHHHHHHHHHHHHHcC
Q 039703 135 NILPDAVLAVSPQQLRE-IGVSYRKASYLRDLAEKYTDG 172 (284)
Q Consensus 135 ~p~Pe~la~~~~e~Lr~-~Gl~~rKA~~I~~lA~~i~~g 172 (284)
..|.+++..+++++|.. +|+++.....|++.......+
T Consensus 25 I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~ 63 (83)
T 2kz3_A 25 IKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSA 63 (83)
T ss_dssp CCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 37899999999999865 799999887777766665554
No 104
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=28.99 E-value=2e+02 Score=24.39 Aligned_cols=82 Identities=6% Similarity=0.084 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhCCCC----CCCHHHHhcCCHHHHHhcCCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhh
Q 039703 117 KAAKSIYTRFVALFNGED----NILPDAVLAVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLT 192 (284)
Q Consensus 117 ~~a~~i~~rL~~~~G~~~----~p~Pe~la~~~~e~Lr~~Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~ 192 (284)
+....++++|.+.||... +.+|-.++ ...+-+-..+. +.+..+...+.+...+.+.|.+++.+++.+.|.
T Consensus 8 ~~~~~i~~~L~~~y~~~~~~l~~~~pfe~L---v~~IlsQqts~---~~v~~~~~~l~~~fpt~~~la~a~~~~l~~~i~ 81 (226)
T 1orn_A 8 QQIRYCLDEMAKMFPDAHCELVHRNPFELL---IAVVLSAQCTD---ALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIR 81 (226)
T ss_dssp HHHHHHHHHHHHHCTTCCCCSCCSSHHHHH---HHHHHHTTSCH---HHHHHHHHHHHHHCCSHHHHHSSCHHHHHHHTG
T ss_pred HHHHHHHHHHHHHcCccCCCCCCCCHHHHH---HHHHHhCCCcH---HHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHHH
Confidence 566789999999998532 12221111 01122223332 233334444444445788999999888887765
Q ss_pred cCCCccHHHHHHH
Q 039703 193 SVKGIGAWSVHMF 205 (284)
Q Consensus 193 ~l~GIGpwTA~~v 205 (284)
.+ |....-|..+
T Consensus 82 ~~-G~~~~KA~~l 93 (226)
T 1orn_A 82 SI-GLYRNKARNI 93 (226)
T ss_dssp GG-SSHHHHHHHH
T ss_pred Hc-CChHHHHHHH
Confidence 55 6654344433
No 105
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=28.98 E-value=58 Score=27.95 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=34.1
Q ss_pred cCCHHHHHhc-CCChHHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhc-CCC-------ccHHHHHHH
Q 039703 143 AVSPQQLREI-GVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTS-VKG-------IGAWSVHMF 205 (284)
Q Consensus 143 ~~~~e~Lr~~-Gl~~rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~-l~G-------IGpwTA~~v 205 (284)
.++.++|..+ |++..+|+.|.+.=+. |.+. -++.|.. ++| ||..+.+-+
T Consensus 128 TA~~~eL~~LpGIG~k~A~~IIeyRe~---G~F~-----------s~eDL~~RV~GIg~~~~~Ig~r~le~l 185 (205)
T 2i5h_A 128 TTRMHQLELLPGVGKKMMWAIIEERKK---RPFE-----------SFEDIAQRVKGIQRPEKLIVSRIIYEI 185 (205)
T ss_dssp CSSSBGGGGSTTCCHHHHHHHHHHHHH---SCCC-----------SHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHhcCCCcCHHHHHHHHHHHhc---CCCC-----------CHHHHHHhcCCCCcchhHHHHHHHHHh
Confidence 6777888777 9999999998776554 6542 2456655 999 666665544
No 106
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.21 E-value=1.8e+02 Score=22.63 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=18.0
Q ss_pred CCHHHHhcCCHHHHHhcCCC
Q 039703 136 ILPDAVLAVSPQQLREIGVS 155 (284)
Q Consensus 136 p~Pe~la~~~~e~Lr~~Gl~ 155 (284)
.+++.+..++.++|..+|+.
T Consensus 71 ~~~d~l~~LTeeDL~~lGVt 90 (119)
T 2b6g_A 71 TPWIELIYLDDETLEKKGVL 90 (119)
T ss_dssp SCHHHHTTCCHHHHHHHSCC
T ss_pred CCHHHHHhcCHHHHHHCCCC
Confidence 57888999999999999988
No 107
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=28.18 E-value=2.2e+02 Score=24.76 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCCCCHHHHhcCCHHHHHh-cCCChHHHHHHHHHHHHHHc
Q 039703 121 SIYTRFVALFNGEDNILPDAVLAVSPQQLRE-IGVSYRKASYLRDLAEKYTD 171 (284)
Q Consensus 121 ~i~~rL~~~~G~~~~p~Pe~la~~~~e~Lr~-~Gl~~rKA~~I~~lA~~i~~ 171 (284)
....+|.+. | +.+.++++.+++.+|.. +|++..++.-+...|+...+
T Consensus 14 ~~~~kL~~~-g---i~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 14 STAEKLVEA-G---YIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp HHHHHHHHH-T---CCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHc-C---CCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHHhhh
Confidence 345566655 6 47999999999999865 79999999999999988765
No 108
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=26.66 E-value=27 Score=32.04 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=11.7
Q ss_pred cCCCccHHHHHHHH
Q 039703 193 SVKGIGAWSVHMFM 206 (284)
Q Consensus 193 ~l~GIGpwTA~~vl 206 (284)
+|||||++||--++
T Consensus 236 gipGiG~KtA~kll 249 (341)
T 3q8k_A 236 SIRGIGPKRAVDLI 249 (341)
T ss_dssp CCTTCCHHHHHHHH
T ss_pred CCCCccHHHHHHHH
Confidence 68999999996555
No 109
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=26.01 E-value=81 Score=23.12 Aligned_cols=35 Identities=11% Similarity=0.309 Sum_probs=27.0
Q ss_pred HHHHHHcCCCChhHhhcCChHHHHHHhhcCCCccHHH
Q 039703 165 LAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWS 201 (284)
Q Consensus 165 lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~GIGpwT 201 (284)
.+..|.+.+++=+.|-.+..+++++. ++|+ +||-.
T Consensus 36 y~~~F~~~eIDG~aLL~Lt~~dl~~~-mgik-lGpal 70 (89)
T 1pk1_B 36 HGDLFRKHEIDGKALLRLNSERMMKY-MGLK-LGPAL 70 (89)
T ss_dssp GHHHHHHTTCCHHHHHTCCHHHHHHH-SCCC-HHHHH
T ss_pred HHHHHHHcCcChHHHhcCCHHHHHHc-cCCC-ccHHH
Confidence 35667778888888988998888887 5686 89844
No 110
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=25.19 E-value=95 Score=23.02 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=27.1
Q ss_pred HHhhcCCCccHHHHHHHHHHhCCCCCcccccChHHHHHHHHHhCC
Q 039703 189 KMLTSVKGIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGL 233 (284)
Q Consensus 189 ~~L~~l~GIGpwTA~~vllf~l~r~dvfPv~D~~v~r~~~rly~~ 233 (284)
..|..||+||+.++.++.-.|...++-+= +.+-..+..++-..
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vGI~s~e~L~--~~Ga~~ay~rL~~~ 46 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELK--DVGSKEAFLRIWEN 46 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHH--HHHHHHHHHHHHTT
T ss_pred HHhhcCCCCCHHHHHHHHHcCCCCHHHHH--hCCHHHHHHHHHHH
Confidence 45789999999999988776665443221 34444444454433
No 111
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=25.17 E-value=1.6e+02 Score=21.66 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=18.3
Q ss_pred CCHHHHhcCCHHHHHhcCCC
Q 039703 136 ILPDAVLAVSPQQLREIGVS 155 (284)
Q Consensus 136 p~Pe~la~~~~e~Lr~~Gl~ 155 (284)
.+.+.+..++.++|...|+.
T Consensus 40 ~~~~~l~~LtdedL~~~GVt 59 (88)
T 2d3d_A 40 TPWIELIYLDDETLEKKGVL 59 (88)
T ss_dssp SCHHHHTTCCHHHHHHTTCC
T ss_pred CCHHHHHHcCHHHHHHcCCc
Confidence 57889999999999999988
No 112
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=25.14 E-value=15 Score=36.72 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=0.0
Q ss_pred ChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 175 SDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 175 ~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
+++.|.+. ..++|.+++|||+.+|+.|.-|
T Consensus 551 sle~L~~A----s~eeL~~I~GIG~~~A~sI~~f 580 (615)
T 3sgi_A 551 SLDAIAAA----STDQLAAVEGVGPTIAAAVTEW 580 (615)
T ss_dssp ----------------------------------
T ss_pred CHHHHHhC----CHHHHhhCCCCCHHHHHHHHHH
Confidence 34445443 3467889999999999888766
No 113
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=24.95 E-value=41 Score=30.00 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=20.6
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHH
Q 039703 185 VTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 185 ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
+...+.|++||||++..|..|+-.
T Consensus 233 e~~~~mL~~IpGVs~~~A~~I~~~ 256 (311)
T 2ziu_A 233 EVFARQLMQISGVSGDKAAAVLEH 256 (311)
T ss_dssp HHHHHHHTTBTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHH
Confidence 347789999999999999998853
No 114
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=24.44 E-value=1.7e+02 Score=20.37 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=18.2
Q ss_pred CCHHHHhcCCHHHHHhcCCC
Q 039703 136 ILPDAVLAVSPQQLREIGVS 155 (284)
Q Consensus 136 p~Pe~la~~~~e~Lr~~Gl~ 155 (284)
.+.+.+..++.++|+++|+.
T Consensus 26 id~e~l~~lt~~DL~~lGI~ 45 (74)
T 3k1r_B 26 IDLEALMLCSDLDLRSISVP 45 (74)
T ss_dssp CCHHHHTTCCHHHHHHTTCC
T ss_pred cCHHHHhHCCHHHHHHcCCC
Confidence 58899999999999999987
No 115
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=23.70 E-value=2.5e+02 Score=23.29 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHhcCCH-HHHHhcCCCh-HHHHHHHHHHHHHHcCCCChhHhhcCChHHHHHHhhcCC
Q 039703 118 AAKSIYTRFVALFNGEDNILPDAVLAVSP-QQLREIGVSY-RKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVK 195 (284)
Q Consensus 118 ~a~~i~~rL~~~~G~~~~p~Pe~la~~~~-e~Lr~~Gl~~-rKA~~I~~lA~~i~~g~l~l~~l~~~~~ee~~~~L~~l~ 195 (284)
....++++|.+.||.... .+..-++ +.|-++=++. ...+.+..+...+.+...+.+.|.+++.+++.+.|..+
T Consensus 5 ~~~~i~~~L~~~~~~~~~----~~~~~~pfe~lv~~Il~qqts~~~v~~~~~~l~~~fpt~~~la~a~~~~l~~~i~~~- 79 (211)
T 2abk_A 5 KRLEILTRLRENNPHPTT----ELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTI- 79 (211)
T ss_dssp HHHHHHHHHHHHCSSCCC----SSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHcCCCCc----CCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHc-
Confidence 456789999999985320 0111122 2232222221 12334555555665555578888888777776655443
Q ss_pred CccHHHHHH
Q 039703 196 GIGAWSVHM 204 (284)
Q Consensus 196 GIGpwTA~~ 204 (284)
|....-|..
T Consensus 80 G~~~~KA~~ 88 (211)
T 2abk_A 80 GLYNSKAEN 88 (211)
T ss_dssp TTHHHHHHH
T ss_pred CCChHHHHH
Confidence 444323433
No 116
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=23.09 E-value=48 Score=23.22 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=15.4
Q ss_pred HHHHhhcCCCccHHHHHHH
Q 039703 187 MFKMLTSVKGIGAWSVHMF 205 (284)
Q Consensus 187 ~~~~L~~l~GIGpwTA~~v 205 (284)
..++|.+|+|||++-.+.+
T Consensus 45 t~~eL~~i~Gvg~~k~~~y 63 (77)
T 2rhf_A 45 TLAELAEVPGLGEKRIEAY 63 (77)
T ss_dssp SHHHHTTSTTTCHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHH
Confidence 3578899999999887653
No 117
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=22.32 E-value=1.4e+02 Score=22.70 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=17.9
Q ss_pred CCHHHHhcCCHHHHHhcCCC
Q 039703 136 ILPDAVLAVSPQQLREIGVS 155 (284)
Q Consensus 136 p~Pe~la~~~~e~Lr~~Gl~ 155 (284)
.+++.+..+++++|...|+.
T Consensus 53 ~~~~~l~~LTdedL~~~GVt 72 (101)
T 2es6_A 53 TPWIELIYLDDETLEKKGVL 72 (101)
T ss_dssp SCHHHHTTCCHHHHHHHTCC
T ss_pred CCHHHHHhcCHHHHHHcCCc
Confidence 47788999999999999988
No 118
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=21.38 E-value=39 Score=30.60 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=12.9
Q ss_pred hcCCCccHHHHHHHHH
Q 039703 192 TSVKGIGAWSVHMFMI 207 (284)
Q Consensus 192 ~~l~GIGpwTA~~vll 207 (284)
-++||||++||--++-
T Consensus 238 pGv~GiG~KtA~kLl~ 253 (336)
T 1rxw_A 238 EGVKGVGVKKALNYIK 253 (336)
T ss_dssp CCCTTCCHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHH
Confidence 3799999999976554
No 119
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=21.35 E-value=2.1e+02 Score=20.74 Aligned_cols=29 Identities=7% Similarity=0.099 Sum_probs=21.9
Q ss_pred HHHHHhCCCCCCCHHHHhcCCHHHHHhcCCCh
Q 039703 125 RFVALFNGEDNILPDAVLAVSPQQLREIGVSY 156 (284)
Q Consensus 125 rL~~~~G~~~~p~Pe~la~~~~e~Lr~~Gl~~ 156 (284)
..+...| +-+.+.|..++.++|.++|+..
T Consensus 42 ~~F~~~g---~d~~e~l~~lt~~DL~~lGIt~ 70 (90)
T 3h8m_A 42 DNFTAAG---YNSLESVARMTIEDVMSLGITL 70 (90)
T ss_dssp HHHHHTT---CCSHHHHHTCCHHHHHHTTCCC
T ss_pred HHHHHcC---CChHHHHhhCCHHHHHHCCCCC
Confidence 3344445 3458999999999999999873
No 120
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=21.27 E-value=1.2e+02 Score=32.83 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=40.6
Q ss_pred HHhcCCHHHHHhcCCCh-H-------HHHHHHHHHHHHHc-CCCChhHhhcCChHHHHHHhhcCCCccHHHHHHHHHH
Q 039703 140 AVLAVSPQQLREIGVSY-R-------KASYLRDLAEKYTD-GILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIF 208 (284)
Q Consensus 140 ~la~~~~e~Lr~~Gl~~-r-------KA~~I~~lA~~i~~-g~l~l~~l~~~~~ee~~~~L~~l~GIGpwTA~~vllf 208 (284)
.+..++++++.++|++. + -.+.|..+..-+++ -.+++... ....-....|..|+||||..|..++-+
T Consensus 658 Elvki~pkdi~sigvg~yQhdv~q~~L~~~L~~vv~d~VN~vGVdiNtA--~~~~~s~~lL~~v~GlGp~kA~~Iv~~ 733 (1219)
T 3psi_A 658 EYANLTSEEVRSLSIHPHQNLLSSEQLSWALETAFVDIVNLVSVEVNKA--TDNNYYASALKYISGFGKRKAIDFLQS 733 (1219)
T ss_dssp HHHHSCHHHHHTSCCCTTGGGSCHHHHHHHHHHHHHHHHHHHCEEHHHH--TTCHHHHTTGGGSTTCCHHHHHHHHHH
T ss_pred HHhccCcccceeeeccccccccCHHHHHHHHHHHHHHHHhccCccHHHh--hcCcCCHHHHHhCCCCCHHHHHHHHHH
Confidence 46678888888888772 2 22333333333333 12333211 122225788999999999999988743
No 121
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=21.00 E-value=1.1e+02 Score=22.30 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.2
Q ss_pred CCCHHHHhcCCHHHHHhcCCCh
Q 039703 135 NILPDAVLAVSPQQLREIGVSY 156 (284)
Q Consensus 135 ~p~Pe~la~~~~e~Lr~~Gl~~ 156 (284)
+.+.+.+..++.++|.++|+..
T Consensus 50 ~~~le~l~~lt~~DL~~lGIt~ 71 (86)
T 2k4p_A 50 WDDLEFLSDITEEDLEEAGVQD 71 (86)
T ss_dssp CCCHHHHTTCCHHHHHHTTCCC
T ss_pred CChHHHHHhCCHHHHHHCCCCC
Confidence 4578999999999999999884
No 122
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=20.75 E-value=2.1e+02 Score=20.56 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=18.5
Q ss_pred CCHHHHhcCCHHHHHhcCCCh
Q 039703 136 ILPDAVLAVSPQQLREIGVSY 156 (284)
Q Consensus 136 p~Pe~la~~~~e~Lr~~Gl~~ 156 (284)
-+.+.+..++.++|.++|+..
T Consensus 46 d~le~l~~lt~~DL~~LGIt~ 66 (86)
T 3kka_C 46 TAIEKVVQMTNDDIKRIGVRL 66 (86)
T ss_dssp CSHHHHHTCCHHHHHHTTCCC
T ss_pred ChHHHHHhCCHHHHHHCCCCC
Confidence 458999999999999999873
No 123
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=20.62 E-value=41 Score=30.69 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=12.6
Q ss_pred cCCCccHHHHHHHHH
Q 039703 193 SVKGIGAWSVHMFMI 207 (284)
Q Consensus 193 ~l~GIGpwTA~~vll 207 (284)
++||||++||--++-
T Consensus 238 Gv~GIG~KtA~kLi~ 252 (346)
T 2izo_A 238 GIRGIGPERALKIIK 252 (346)
T ss_dssp CSTTCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHH
Confidence 799999999976654
No 124
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=20.49 E-value=41 Score=31.12 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=12.6
Q ss_pred cCCCccHHHHHHHHH
Q 039703 193 SVKGIGAWSVHMFMI 207 (284)
Q Consensus 193 ~l~GIGpwTA~~vll 207 (284)
+|||||++||--++-
T Consensus 255 GVpGIG~KtA~kLl~ 269 (363)
T 3ory_A 255 GFEGIGPKKALQLVK 269 (363)
T ss_dssp CSTTCCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHH
Confidence 899999999976654
No 125
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=20.32 E-value=2.1e+02 Score=20.03 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=19.2
Q ss_pred CCCHHHHhcCCHHHHHhcCCCh
Q 039703 135 NILPDAVLAVSPQQLREIGVSY 156 (284)
Q Consensus 135 ~p~Pe~la~~~~e~Lr~~Gl~~ 156 (284)
+-+.+.+..++.++|..+|+..
T Consensus 36 y~~~~~~~~lt~~DL~~lGI~~ 57 (78)
T 1v38_A 36 YETLDDLKDIKESHLIELNIAD 57 (78)
T ss_dssp CCBHHHHTTCCHHHHHHTTTCC
T ss_pred CCCHHHHhhcCHHHHHHcCCCC
Confidence 3578999999999999999873
No 126
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=20.13 E-value=1.2e+02 Score=21.45 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=19.3
Q ss_pred CCCHHHHhcCCHHHHHhcCCC
Q 039703 135 NILPDAVLAVSPQQLREIGVS 155 (284)
Q Consensus 135 ~p~Pe~la~~~~e~Lr~~Gl~ 155 (284)
|.+.+.+..++.++|+++|+.
T Consensus 39 ~~~~~~l~~lt~~dL~~lGI~ 59 (83)
T 2qkq_A 39 FGSFELVSQISAEDLLRIGVT 59 (83)
T ss_dssp CCSHHHHTTCCHHHHHHHTCC
T ss_pred CCcHHHHhhCCHHHHHHCCCC
Confidence 478999999999999999998
Done!