RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 039703
(284 letters)
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II
(gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Length = 183
Score = 126 bits (317), Expect = 2e-36
Identities = 38/187 (20%), Positives = 70/187 (37%), Gaps = 20/187 (10%)
Query: 91 RPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILP--------DAVL 142
R P F ++IL Q ++ A + R L+ + P +
Sbjct: 7 RLP---GCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLA 63
Query: 143 AVSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSV 202
A PQ L+ +G+ ++A L LA +G L +++ K L + GIG W+
Sbjct: 64 AADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQA--MKTLQTFPGIGRWTA 121
Query: 203 HMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKPYRSVGSWYMWR 262
+ F + DV D +++ + ++ E+WKP+RS ++W
Sbjct: 122 NYFALRGWQAKDVFLPDDYLIKQRFPGMT-------PAQIRRYAERWKPWRSYALLHIWY 174
Query: 263 LMEAKGV 269
+
Sbjct: 175 TEGWQPD 181
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 190
Score = 87.2 bits (215), Expect = 2e-21
Identities = 27/184 (14%), Positives = 46/184 (25%), Gaps = 24/184 (13%)
Query: 101 PFLSLAKSILYQQLAYKAAKSIYTRFVALF-------NGEDNIL---PDAVLAVSPQQLR 150
P L I + R F + A+ +
Sbjct: 2 PIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHL 61
Query: 151 EIGVSYRKASYLRDLAEK---YTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMI 207
+A Y+ A G+ + + E K L + G+G +
Sbjct: 62 RKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICL 121
Query: 208 FSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALK----------MEEVCEKWKPYRSVGS 257
+L KP +PV D+ + Q Y K W PY +
Sbjct: 122 MALDKPQAVPV-DVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAA 180
Query: 258 WYMW 261
++
Sbjct: 181 AVLF 184
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII)
{Helicobacter pylori [TaxId: 210]}
Length = 217
Score = 60.6 bits (146), Expect = 1e-11
Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 13/176 (7%)
Query: 82 LLATLIDAHRPPTFESSRSPFLSLAKSILYQQLAYKAAKSIYTRFVALFN--GEDNILPD 139
L + + + P + + F +L ++L Q ++A F +D I
Sbjct: 10 LKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLK 69
Query: 140 AVLAVSPQQLRE----IGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVK 195
+ + +L E G +KA L DL+ S E + L K
Sbjct: 70 KIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFE---NFKQEVTREWLLDQK 126
Query: 196 GIGAWSVHMFMIFSLHKPDVLPVGDLGVRKGLQVLYGLKELPGALKMEEVCEKWKP 251
GIG S + ++ K V D L+ L E +++ EK
Sbjct: 127 GIGKESADAILCYACAKEV--MVVDKYSYLFLKKLGIEIEDYD--ELQHFFEKGVQ 178
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain
of the methyl-GpG binding protein mbd4 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 144
Score = 42.8 bits (100), Expect = 8e-06
Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 15/140 (10%)
Query: 99 RSPFLSLAKSILYQQLAYKAAKSIYTRFVALFNGEDNILPDAVLAVSPQQLREIGVSYRK 158
P+ L +I + + K A + F+ + + VS + L+ +G+ +
Sbjct: 18 HDPWKLLIATIFLNRTSGKMAIPVLWEFLEKYPSAEVARAADWRDVS-ELLKPLGLYDLR 76
Query: 159 ASYLRDLAEKYTDGILSDESIVEMDDVTMFKMLTSVKGIGAWSVHMFMIFSLHKPDVLPV 218
A + +++Y ++ + GIG + + IF +++ +
Sbjct: 77 AKTIIKFSDEYLT--------------KQWRYPIELHGIGKYGNDSYRIFCVNEWKQVHP 122
Query: 219 GDLGVRKGLQVLYGLKELPG 238
D + K L+ E
Sbjct: 123 EDHKLNKYHDWLWENHEKLS 142
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 28.2 bits (62), Expect = 1.3
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 15/49 (30%)
Query: 125 RFVALFNGEDNI---------------LPDAVLAVSPQQLREIGVSYRK 158
R L G DNI + +A +P L E+ + K
Sbjct: 298 RLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVK 346
>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 179
Score = 26.7 bits (59), Expect = 2.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 144 VSPQQLREIGVSYRKASYLRDLAEKYTDGILSDESIVEMDDVTM 187
VS +QLR +GV Y K + + + I + MD +T+
Sbjct: 26 VSLEQLRTLGVLYWKLDADKYENDPELEKIRKMRNYSWMDIITI 69
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 73
Score = 25.5 bits (56), Expect = 2.6
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 183 DDVTMFKMLTSVKGIGA 199
+++ +F++L SV G+G
Sbjct: 4 ENLALFELLLSVSGVGP 20
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 26.8 bits (59), Expect = 3.0
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 67 GEVDIALRHLRDKDPL----LATLIDAHRPPTFESSRSPFLSLAKSILYQQLA 115
V AL LR+ + A + + + ++ PFL A + +
Sbjct: 98 AAVGAALEQLREAEEGQRKAWAIALLSGQFDLLPAALVPFLGAALQVAWSHWL 150
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 71
Score = 24.7 bits (54), Expect = 4.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 183 DDVTMFKMLTSVKGIGA 199
++ +F L SV G+G
Sbjct: 3 ENRDLFLALLSVSGVGP 19
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 25.1 bits (54), Expect = 9.3
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 80 DPLLATLIDAHRPPTFESSRSPFLS 104
++A +I P P
Sbjct: 224 PEMMAEIISVQVPKILSGKVKPIYF 248
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.386
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,025,519
Number of extensions: 46459
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 12
Length of query: 284
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,254,276
Effective search space: 250855200
Effective search space used: 250855200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)