BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039705
(539 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CS93|GAOA_GIBZA Galactose oxidase OS=Gibberella zeae GN=GAOA PE=1 SV=1
Length = 680
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 94/224 (41%), Gaps = 28/224 (12%)
Query: 318 RVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPDDPINERFSELTPTSKPR 377
R ++LP G I G ++G + + P TP +Y P+ + F + P S R
Sbjct: 480 RTFHTSVVLPDGSTFITGGQRRGIPFED--STPVFTPEIYVPE---QDTFYKQNPNSIVR 534
Query: 378 MCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFA--SYRPSI 435
+ HS S++LPDG++ G G + F P Y S + RP I
Sbjct: 535 VYHSISLLLPDGRVFNGGGG-------LCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI 587
Query: 436 VSKFKGKMLKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVPATKELI 495
++ + +K G I + S++ + Y TH V+ QR +P T
Sbjct: 588 -TRTSTQSVKVGGRITI-----STDSSISKASLIRYGT--ATHTVNTDQR-RIPLTLTNN 638
Query: 496 DVGSGIFQVSVMAPPTAKIAPPSFYLLFVVYRQ-VPSPGTWVQI 538
S FQV P + +A P +++LFV+ VPS + +++
Sbjct: 639 GGNSYSFQV----PSDSGVALPGYWMLFVMNSAGVPSVASTIRV 678
>sp|I1S2N3|GAOA_GIBZE Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 /
FGSC 9075 / NRRL 31084) GN=GAOA PE=3 SV=1
Length = 680
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 93/224 (41%), Gaps = 28/224 (12%)
Query: 318 RVMGEMLLLPTGDVLIINGAKKGTAGWNFATDPNTTPVLYEPDDPINERFSELTPTSKPR 377
R ++LP G I G ++G + + P TP +Y P+ + F + P S R
Sbjct: 480 RTFHTSVVLPDGSTFITGGQRRGIPFED--STPVFTPEIYVPE---QDTFYKQNPNSIVR 534
Query: 378 MCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFYPPYFDESFA--SYRPSI 435
+ HS S++LPDG++ G G + F P Y S + RP I
Sbjct: 535 VYHSISLLLPDGRVFNGGGG-------LCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI 587
Query: 436 VSKFKGKMLKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHGVSMGQRLLVPATKELI 495
++ + +K G I + S+ + Y TH V+ QR +P T
Sbjct: 588 -TRTSTQSVKVGGRITI-----STDSSITKASLIRYGT--ATHTVNTDQR-RIPLTLTNN 638
Query: 496 DVGSGIFQVSVMAPPTAKIAPPSFYLLFVVYRQ-VPSPGTWVQI 538
S FQV P + +A P +++LFV+ VPS + +++
Sbjct: 639 GGNSYSFQV----PSDSGVALPGYWMLFVMNSAGVPSVASTIRV 678
>sp|P37367|ATA1_SYNY3 Cation-transporting ATPase pma1 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=pma1 PE=3 SV=2
Length = 905
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 66/170 (38%), Gaps = 24/170 (14%)
Query: 363 INERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNP---HSRYNLTSGSKYPTELRIEKF 419
I E +E S + + + VL DG+ L S +L SG K P +LR+ K
Sbjct: 104 IQEAKAEGAIASLAKAVTTEATVLRDGQNLRIPSQDLVIGDIVSLASGDKVPADLRLLKV 163
Query: 420 YPPYFDESFASYRPSIVSKFKGKMLKYGQNFVIQFKLDELEVSLNDLKVTMYAPPFTTHG 479
DES + V K +L E L + YA F T G
Sbjct: 164 RNLQVDESALTGEAVPVEK--------------AVELLPEETPLAERLNMAYAGSFVTFG 209
Query: 480 VSMGQRLLVPATKELIDVG----SGIFQVSVMAPPTAKIAPPSFYLLFVV 525
G +V AT ++G S QVS+M P T K A S LL+V+
Sbjct: 210 QGTG---VVVATANATEMGQISQSMEKQVSLMTPLTRKFAKFSHTLLYVI 256
>sp|Q6Q7X9|KLH31_DANRE Kelch-like protein 31 OS=Danio rerio GN=klhl31 PE=2 SV=1
Length = 635
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 362 PINERFSELTPTSKPRMCHSTSVVLPDGKILVAG---SNPHSR 401
P + ++ P PR CH++SV+ DGKILV+G +N +SR
Sbjct: 442 PSSNQWQMKAPMEVPRCCHASSVI--DGKILVSGGYINNAYSR 482
>sp|Q8CA72|GAN_MOUSE Gigaxonin OS=Mus musculus GN=Gan PE=1 SV=2
Length = 597
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 361 DPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFY 420
DP + + EL P S PR+ H V+ +G + V G ++ L+SG KY +
Sbjct: 300 DPNRQLWIELAPLSMPRINHG--VLSAEGFLFVLGGQDENKQTLSSGEKYDPDANTWTAL 357
Query: 421 PP 422
PP
Sbjct: 358 PP 359
>sp|Q9H2C0|GAN_HUMAN Gigaxonin OS=Homo sapiens GN=GAN PE=1 SV=1
Length = 597
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 361 DPINERFSELTPTSKPRMCHSTSVVLPDGKILVAGSNPHSRYNLTSGSKYPTELRIEKFY 420
DP + + EL P S PR+ H V+ +G + V G ++ L+SG KY +
Sbjct: 300 DPNRQLWIELAPLSMPRINHG--VLSAEGFLFVFGGQDENKQTLSSGEKYDPDANTWTAL 357
Query: 421 PP 422
PP
Sbjct: 358 PP 359
>sp|Q10174|YAV5_SCHPO Uncharacterized aminotransferase C27F1.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC27F1.05c PE=3
SV=1
Length = 484
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 76 VDYRALAVEYDAESAAIRPLKILTDTWSSSGGLSANGTIV 115
+ YR LA + A + P + LT TW+++GG AN ++
Sbjct: 128 ISYRNLAAAFGRNMALLSPGQKLTRTWTATGGAEANEGVI 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,770,216
Number of Sequences: 539616
Number of extensions: 9617869
Number of successful extensions: 20691
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 20680
Number of HSP's gapped (non-prelim): 19
length of query: 539
length of database: 191,569,459
effective HSP length: 122
effective length of query: 417
effective length of database: 125,736,307
effective search space: 52432040019
effective search space used: 52432040019
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)