BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039706
(1166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily
B Member 8
Length = 92
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 19/83 (22%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
+ Y +LGV++S S DIK+ YRK ALR HPDK N D+ ++AE
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDK---------NPDN----------KEEAE 50
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
K FK+++EAY VLSD KRS YD
Sbjct: 51 KKFKLVSEAYEVLSDSKKRSLYD 73
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ GNE FQ G + +A++HYT A ++ +P A + NRAA Y L A+ DC
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEA----IKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
I L+ ++K +R+A E ++DY A + + + L
Sbjct: 76 CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671
SNRAA L + AL DC + ++P F++ R A A+ + A ++ L
Sbjct: 54 SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
Query: 672 GSDVCVDQKIAVEASDGLQK 691
S EA+DG Q+
Sbjct: 114 DSS-------CKEAADGYQR 126
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 43/83 (51%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y LG+ S +IKR YR+ ALR+HPDK KE G AE
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKN---------------KEPG------AE 42
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK IAEAY VLSDP KR +D
Sbjct: 43 EKFKEIAEAYDVLSDPRKREIFD 65
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 23/82 (28%)
Query: 986 MYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEK 1045
+Y +LGV S + ++K+GYRKAAL++HPDK D EK
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG----------------------DTEK 47
Query: 1046 LFKMIAEAYAVLSDPSKRSRYD 1067
FK I+EA+ +L+DP KR YD
Sbjct: 48 -FKEISEAFEILNDPQKREIYD 68
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 106/467 (22%), Positives = 178/467 (38%), Gaps = 97/467 (20%)
Query: 614 RAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGS 673
RA +A+G+ + AL D + + DF +++ + L G++++A F+ L+S
Sbjct: 66 RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 674 DVCVDQKIAVEASDGLQKAQKVSECMQR-SAQLLQNKTSNDAEIALGVIDEALFISSYSE 732
++ EA L K S+ MQR +Q L S D A+ +D+ L + +
Sbjct: 126 SENEEK----EAQSQLIK----SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177
Query: 733 KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA-----NGQSMELDSSESTKHV 787
+L E++AE K P A ++ D++E+ +
Sbjct: 178 ELRELRAECFI--------------------KEGEPRKAISDLKAASKLKNDNTEAFYKI 217
Query: 788 SFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847
S Y+ LG E +++ E E + + V++L +
Sbjct: 218 S----------TLYYQLGDHELSLS--EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 265
Query: 848 EAFQAGRHSEAVEHYTAALSC-------TVESHPFAAICFCNRAAAYKALRHITDAIADC 900
E + GR+++A Y + + TV S CF +A+R C
Sbjct: 266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV-------C 318
Query: 901 NLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINL 960
+ + ++ + + A+ RA Y + YD A D+ T Q N + +
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE------TAQEHNENDQQIREGLEKA 372
Query: 961 ANDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQS 1020
L+Q++ R D Y ILGV+ + +I + YRK AL+ HPD
Sbjct: 373 QRLLKQSQKR--------------DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ-- 416
Query: 1021 LVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYD 1067
E K AEK F IA A VLSDP R ++D
Sbjct: 417 ---------------NEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 448
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 41/83 (49%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV S D+K+ YR+ AL+ HPDK N G A
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDK---------NHAPG------------AT 46
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ FK I AYAVLS+P KR +YD
Sbjct: 47 EAFKAIGTAYAVLSNPEKRKQYD 69
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 42/82 (51%), Gaps = 19/82 (23%)
Query: 986 MYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEK 1045
Y IL V S S DIK+ YR+ AL+ HPDK DN KE AEK
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDK------NPDN------KEF-------AEK 44
Query: 1046 LFKMIAEAYAVLSDPSKRSRYD 1067
FK +AEAY VLSD KR YD
Sbjct: 45 KFKEVAEAYEVLSDKHKREIYD 66
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 41/84 (48%), Gaps = 19/84 (22%)
Query: 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDA 1043
+D Y +L V S IK+ YRK AL+ HPDK E ++A
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDK-------------------NPENKEEA 49
Query: 1044 EKLFKMIAEAYAVLSDPSKRSRYD 1067
E+ FK +AEAY VLSD KR YD
Sbjct: 50 ERRFKQVAEAYEVLSDAKKRDIYD 73
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal
Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj,
Nmr, 20 Structures
Length = 77
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV + +I++ Y++ A+++HPD+ + GD K+AE
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDR--------NQGD------------KEAE 43
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
FK I EAY VL+D KR+ YD
Sbjct: 44 AKFKEIKEAYEVLTDSQKRAAYD 66
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ GNE F+ G + A+ HY A V+ P AI + NRAA L A+ DC+
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEA----VKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSG 952
I LD ++K R+A +R++ A + + Q++ SN+
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL-----QVDPSNEEA 117
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
SNRAA L + AL DC + +D F++ +R A C +A+ E A + + LQ
Sbjct: 51 SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 100/467 (21%), Positives = 172/467 (36%), Gaps = 97/467 (20%)
Query: 614 RAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGS 673
RA +A G+ + AL D + + DF +++ + L G++++A F+ L+S
Sbjct: 66 RATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125
Query: 674 DVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEK 733
E + + K E + +Q L S D A+ +D+ L + + +
Sbjct: 126 S-------ENEEKEAQSQLIKSDEXQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178
Query: 734 LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA-----NGQSMELDSSESTKHVS 788
L E++AE K P A ++ D++E+ +S
Sbjct: 179 LRELRAECFI--------------------KEGEPRKAISDLKAASKLKNDNTEAFYKIS 218
Query: 789 FRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGG-KMLESLIPLAGTVRELLCRKSAGN 847
++ + +L + E + + H+ K ++ L L + EL+
Sbjct: 219 TLYYQ---LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI------- 268
Query: 848 EAFQAGRHSEAVEHYTAALSC-------TVESHPFAAICFCNRAAAYKALRHITDAIADC 900
+ GR+++A Y + TV S CF +A+R C
Sbjct: 269 ---RDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV-------C 318
Query: 901 NLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINL 960
+ + + + + A+ RA Y + YD A D+ T Q N + +
Sbjct: 319 SEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYE------TAQEHNENDQQIREGLEKA 372
Query: 961 ANDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQS 1020
L+Q++ R D Y ILGV+ + +I + YRK AL+ HPD
Sbjct: 373 QRLLKQSQKR--------------DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ-- 416
Query: 1021 LVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYD 1067
E K AEK F IA A VLSDP R ++D
Sbjct: 417 ---------------NEEEKKKAEKKFIDIAAAKEVLSDPEXRKKFD 448
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal
Fragment (Residues 1-104) Of The Molecular Chaperone
Dnaj, Nmr, 20 Structures
Length = 103
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV + +I++ Y++ A+++HPD+ + GD K+AE
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDR--------NQGD------------KEAE 43
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
FK I EAY VL+D KR+ YD
Sbjct: 44 AKFKEIKEAYEVLTDSQKRAAYD 66
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV + +I++ Y++ A+++HPD+ + GD K+AE
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDR--------NQGD------------KEAE 43
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
FK I EAY VL+D KR+ YD
Sbjct: 44 AKFKEIKEAYEVLTDSQKRAAYD 66
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G E F AV+ YT ++ P A + NRAAA L +AIADCN AI
Sbjct: 11 GKEYFTKSDWPNAVKAYTE----MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSIN 959
D N+++A R+AT +++Y AS L A TK E +N G S R I+
Sbjct: 67 KDPNFVRAYIRKATAQIAVKEY---ASALETLDAARTKDAEVNN--GSSAREID 115
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 592 PNLASAETIAAQEACEKWR-LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAAN 650
PN A T + A E R SNRAA L +A++DC A+ DP+F+R +R A
Sbjct: 21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80
Query: 651 CHLALGEIEDA 661
+A+ E A
Sbjct: 81 AQIAVKEYASA 91
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
G E F AV+ YT ++ P A + NRAAA L +AIADCN AI
Sbjct: 146 GKEYFTKSDWPNAVKAYTE----MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSIN 959
D N+++A R+AT +++Y AS L A TK E +N G S R I+
Sbjct: 202 KDPNFVRAYIRKATAQIAVKEY---ASALETLDAARTKDAEVNN--GSSAREID 250
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 592 PNLASAETIAAQEACEKWR-LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAAN 650
PN A T + A E R SNRAA L +A++DC A+ DP+F+R +R A
Sbjct: 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 215
Query: 651 CHLALGEIEDA 661
+A+ E A
Sbjct: 216 AQIAVKEYASA 226
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 16/138 (11%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFC-NRAAAYKALRHITDAIADCN 901
K+ GN+ ++A + EA+EHY A + I + NRAAA AI+ N
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELHKD------ITYLNNRAAAEYEKGEYETAISTLN 62
Query: 902 LAIALDGNYLKAISRRATLYEMI-RDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINL 960
A+ G ++A Y++I + + + +H+L L K IE +S R+ ++
Sbjct: 63 DAVE-QGREMRAD------YKVISKSFARIGNAYHKL-GDLKKTIEYYQKSLTEHRTADI 114
Query: 961 ANDLRQARMRLTAVEEEA 978
LR A L E EA
Sbjct: 115 LTKLRNAEKELKKAEAEA 132
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ GNE + AV Y A +E +P A+ FCNRAAAY L + A+ DC
Sbjct: 16 KTEGNEQMKVENFEAAVHFYGKA----IELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
AI +D Y KA R + + A + + + + L
Sbjct: 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
NRAA LG A+ DC A+ IDP + + R +L + +A Y++ L+
Sbjct: 49 FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108
Query: 671 SGSD 674
D
Sbjct: 109 LDPD 112
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 21/90 (23%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV+ + + IK YR+ A ++HPD V +N DAE
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPD------VSKEN---------------DAE 67
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYDLEEETRN 1074
FK +AEA+ VL D +R+ YD + RN
Sbjct: 68 AKFKDLAEAWEVLKDEQRRAEYDQLWQHRN 97
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 20/82 (24%)
Query: 986 MYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEK 1045
+Y +LG++ + + DIK+ YRK AL++HPDK N D+ +A
Sbjct: 19 LYHVLGLDKNATSDDIKKSYRKLALKYHPDK---------NPDN-----------PEAAD 58
Query: 1046 LFKMIAEAYAVLSDPSKRSRYD 1067
FK I A+A+L+D +KR+ YD
Sbjct: 59 KFKEINNAHAILTDATKRNIYD 80
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 21/84 (25%)
Query: 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDA 1043
D Y +LGV + S ADIK+ Y+K A HPDK N D G A
Sbjct: 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDK---------NKDPG------------A 55
Query: 1044 EKLFKMIAEAYAVLSDPSKRSRYD 1067
E F I++AY +LS+ KR+ YD
Sbjct: 56 EDRFIQISKAYEILSNEEKRTNYD 79
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 819 SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPF-AA 877
SG G P A +V +L + GNE F+ G + A+ YT AL +++ P A
Sbjct: 11 SGPGTPEPRPATPGASSVEQL---RKEGNELFKCGDYGGALAAYTQALG--LDATPQDQA 65
Query: 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937
+ NRAA + L A + + AI DG +KA+ RR+ E + D A D R
Sbjct: 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125
Query: 938 IALLTK 943
++L K
Sbjct: 126 VSLEPK 131
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 22/100 (22%)
Query: 986 MYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEK 1045
Y ILGV S S IK+ + K A+++HPDK DAE
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP---------------------DAEA 47
Query: 1046 LFKMIAEAYAVLSDPSKRSRYD-LEEETRNTQKKQNGSNT 1084
F+ IAEAY LSD ++R YD L + K Q+G ++
Sbjct: 48 KFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQSGPSS 87
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 23/81 (28%)
Query: 987 YLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKL 1046
Y +LGV+ S ++K+ YRK AL+ HPDK + D +
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDK-----------------------NPDGAEQ 47
Query: 1047 FKMIAEAYAVLSDPSKRSRYD 1067
FK I++AY VLSD KR YD
Sbjct: 48 FKQISQAYEVLSDEKKRQIYD 68
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN F ++ EA Y A++ +P A+ + NRA Y ++ A+ADC
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944
A+ LDG +KA + YD A ++ R +L +Q
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN F ++ EA Y A++ +P A+ + NRA Y ++ A+ADC
Sbjct: 13 KEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944
A+ LDG +KA + YD A ++ R +L +Q
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human
Tid1 Protein
Length = 79
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y ILGV + S +IK+ Y + A ++HPD N DD KE
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPD---------TNKDDPKAKE---------- 48
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
F +AEAY VLSD KR +YD
Sbjct: 49 -KFSQLAEAYEVLSDEVKRKQYD 70
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
KS GN A +S+A++ YT ALS P I NRAAAY A A D L
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIA----PANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLI 938
A +D Y KA SR + DY A + + I
Sbjct: 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670
LSNRAA A G+ A D LA +DP + + R + + + A + + ++
Sbjct: 48 LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107
Query: 671 S----GSDVC 676
+ GSD
Sbjct: 108 AEGNGGSDAM 117
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 21/83 (25%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y I+GV+ + + IK YR+ A ++HPD + + DAE
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP---------------------DAE 44
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
FK +AEA+ VLSD +R+ YD
Sbjct: 45 ARFKEVAEAWEVLSDEQRRAEYD 67
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 23/81 (28%)
Query: 987 YLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKL 1046
Y +LGV+ + + ++K+ YRK AL++HPDK N ++G +
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDK---------NPNEG--------------EK 45
Query: 1047 FKMIAEAYAVLSDPSKRSRYD 1067
FK I++AY VLSD KR YD
Sbjct: 46 FKQISQAYEVLSDAKKRELYD 66
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA-----------AICFCNRAAAYKALR 891
K G F+ G++ +A+ Y +S F+ N A + L+
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 892 HITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQS 951
+ AI CN A+ LD N K +SRR + + D++ A +DF +++ L Q
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270
Query: 952 GVSDRSI 958
V + I
Sbjct: 271 AVCQQRI 277
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ N+ F+A + A++ Y+ A +E +P AI + NR+ AY A+ D
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQA----IELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
AI LD Y+K RRA + + A D+ ++ +
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 103
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 831 PLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL 890
P G ++ K+ N+ F+A + A++ Y+ A +E +P AI + NR+ AY
Sbjct: 5 PADGALKRAEELKTQANDYFKAKDYENAIKFYSQA----IELNPSNAIYYGNRSLAYLRT 60
Query: 891 RHITDAIADCNLAIALDGNYLKAISRRAT 919
A+ D AI LD Y+K RRA
Sbjct: 61 ECYGYALGDATRAIELDKKYIKGYYRRAA 89
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 18/97 (18%)
Query: 973 AVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLW 1032
A+E+ +KD Y ILG + S +++D+K+ Y+K L +HPDK
Sbjct: 9 ALEQTLKKD----WYSILGADPSANMSDLKQKYQKLILLYHPDKQS-------------- 50
Query: 1033 KEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLE 1069
++ A ++ + F I +A+ +L + + +YDL+
Sbjct: 51 ADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQ 87
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 21/107 (19%)
Query: 971 LTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDG 1030
+ AVE+ +KD Y ILG + S +++D+K+ Y+K L +HPDK
Sbjct: 1 MMAVEQMPKKD----WYSILGADPSANISDLKQKYQKLILMYHPDKQS------------ 44
Query: 1031 LWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDL---EEETRN 1074
++ A ++ + F I +A+ +L + + YDL E++ RN
Sbjct: 45 --TDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDLRN 89
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 831 PLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL 890
P G ++ K+ N+ F+A + A++ Y+ A +E +P AI + NR+ AY
Sbjct: 13 PADGALKRAEELKTQANDYFKAKDYENAIKFYSQA----IELNPSNAIYYGNRSLAYLRT 68
Query: 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
A+ D AI LD Y+K RRA + + A D+ ++ +
Sbjct: 69 ECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 118
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 11/127 (8%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA-----------AICFCNRAAAYKALR 891
K G F+ G++ +A+ Y +S F+ N A + L+
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 892 HITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQS 951
+ AI CN A+ LD N K + RR + + D++ A +DF +++ L Q
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270
Query: 952 GVSDRSI 958
V + I
Sbjct: 271 AVCQQRI 277
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVES------------HPFAAICFCNRAAAYKAL 890
K+ GN F++ A++ YT L S P A C N A +
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHR 936
A+ C A+ +D + KA+ RRA ++ +++YD A +D +
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ GN ++ G + +A+E+Y AL E P A + N AY AI
Sbjct: 13 KNLGNAYYKQGDYQKAIEYYQKAL----ELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940
A+ LD N KA RR Y DY A D+ + + L
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 27/170 (15%)
Query: 977 EARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIG 1036
E R D + Y +LGV + S +I++ ++K AL+ HPDK +
Sbjct: 16 EGRHD--QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN---------------- 57
Query: 1037 AEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPF 1096
H D F I AY VL D R +YD E + + Q G S ++ Y ++
Sbjct: 58 PNAHGD----FLKINRAYEVLKDEDLRKKYDKYGE-KGLEDNQGGQYESWSY-YRYDFGI 111
Query: 1097 ERSSSRRQWREVRRSYDNSAARGDIYSISFNLRIASNKRCYRPFVTIREF 1146
E RR +D + G+++ ++F +S+ P T REF
Sbjct: 112 YDDDPEIITLE-RREFDAAVNSGELWFVNFYSPGSSHSHDLAP--TWREF 158
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 25/162 (15%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
+ Y +LGV + S +I++ ++K AL+ HPDK + H D
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN----------------PNAHGD-- 44
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQ 1104
F I AY VL D R +YD E + + Q G S ++ Y ++
Sbjct: 45 --FLKINRAYEVLKDEDLRKKYDKYGE-KGLEDNQGGQYESWSY-YRYDFGIYDDDPEII 100
Query: 1105 WREVRRSYDNSAARGDIYSISFNLRIASNKRCYRPFVTIREF 1146
E RR +D + G+++ ++F S+ C+ T REF
Sbjct: 101 TLE-RREFDAAVNSGELWFVNFYSPGCSH--CHDLAPTWREF 139
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 20/82 (24%)
Query: 986 MYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEK 1045
+Y +LGV S+ + A IK Y + +HPD+ S +A +
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS--------------------AEAAE 58
Query: 1046 LFKMIAEAYAVLSDPSKRSRYD 1067
F I++AY VL + R +YD
Sbjct: 59 RFTRISQAYVVLGSATLRRKYD 80
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI-------------CFCNRAAAYK 888
RK GN F+ + EA++ Y A++ + F C N AA
Sbjct: 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI 241
Query: 889 ALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHR 936
L+ +AI CN+ + + KA+ RR + D A DF +
Sbjct: 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK 289
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIAD 899
L K GN+ F+ ++ +A+++Y AL ++ P + + N +A Y ++ + +
Sbjct: 7 LALKDKGNQFFRNKKYDDAIKYYNWALE--LKEDP---VFYSNLSACYVSVGDLKKVVEM 61
Query: 900 CNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937
A+ L +Y K + RRA+ E + + A D L
Sbjct: 62 STKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K GN+A G +A++ Y+ A+ +H + + NR+AAY A D
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDF 934
+ L ++ K SR+A E + ++ A +
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTY 95
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ GN F A +EA+++Y A +E P + + N +A Y + + I
Sbjct: 29 KNRGNHFFTAKNFNEAIKYYQYA----IELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937
A+ + ++ KA+ RRA+ E + ++ A D L
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNL 902
K+ GN F A +EA+++Y A +E P + + N +A Y + + I
Sbjct: 25 KNRGNHFFTAKNFNEAIKYYQYA----IELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 903 AIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937
A+ + ++ KA+ RRA+ E + ++ A D L
Sbjct: 81 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115
>pdb|2X5C|A Chain A, Crystal Structure Of Hypothetical Protein Orf131 From
Pyrobaculum Spherical Virus
pdb|2X5C|B Chain B, Crystal Structure Of Hypothetical Protein Orf131 From
Pyrobaculum Spherical Virus
Length = 131
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 991 GVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMI 1050
G E SVS+ + K GY+ +R HPD ++ ++D + KE+ EV KD E + K
Sbjct: 59 GAEGSVSIVETKNGYKYLVIR-HPDGGTHTVPKTD--ISAILKEL-CEVKKDLEYVLKRY 114
Query: 1051 AE 1052
E
Sbjct: 115 KE 116
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 33.9 bits (76), Expect = 0.58, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
GN ++ G + EA+E+Y AL E P A + N AY +AI A+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKAL----ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSG 952
LD N +A Y DYD A + + + L E G
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 33.5 bits (75), Expect = 0.70, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 17/67 (25%)
Query: 1001 IKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDP 1060
+ + YR A +HHPD R N ++ L AE+ F++IA AY L D
Sbjct: 33 LAKAYRALARKHHPD-------RVKNKEEKLL----------AEERFRVIATAYETLKDD 75
Query: 1061 SKRSRYD 1067
++ YD
Sbjct: 76 EAKTNYD 82
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 33.1 bits (74), Expect = 0.87, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
GN ++ G + EA+E+Y AL E +P A + N AY +AI A+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKAL----ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSG 952
L N +A Y DYD A + + + L E G
Sbjct: 72 LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 33.1 bits (74), Expect = 0.89, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905
GN ++ G + EA+E+Y AL E P +A + N AY +AI A+
Sbjct: 8 GNAYYKQGDYDEAIEYYQKAL----ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946
LD +A Y DYD A + + + L + E
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDK 1016
D + +LGV+ S ++ + YRK A+ HPDK
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|2XCB|A Chain A, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCB|B Chain B, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCC|A Chain A, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
pdb|2XCC|B Chain B, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
Length = 142
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 615 AATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYF 665
A R +LG AL +D + R AA CHL LG+++ A F
Sbjct: 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGF 109
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 21/111 (18%)
Query: 588 IKQEPNLASA---------ETIAAQEACEKWRLS------------NRAATRMALGRMRD 626
IKQ P LA A E QEA E +R + N AA +A G M
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 627 ALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCV 677
A+ + A+ +PD V+ N ALG +E+A + +++ + V
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 20/83 (24%)
Query: 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAE 1044
D Y +LG + SV I ++ AL HPDK + + A
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPE--------------------NPKAV 60
Query: 1045 KLFKMIAEAYAVLSDPSKRSRYD 1067
+ F+ + +A +L++ R+RYD
Sbjct: 61 ETFQKLQKAKEILTNEESRARYD 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,880,018
Number of Sequences: 62578
Number of extensions: 1125624
Number of successful extensions: 2273
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2142
Number of HSP's gapped (non-prelim): 113
length of query: 1166
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1056
effective length of database: 8,089,757
effective search space: 8542783392
effective search space used: 8542783392
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)