Query 039706
Match_columns 1166
No_of_seqs 931 out of 5337
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 12:24:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0624 dsRNA-activated protei 100.0 7.4E-46 1.6E-50 401.3 37.8 419 594-1083 56-476 (504)
2 KOG0550 Molecular chaperone (D 100.0 7.3E-40 1.6E-44 363.5 26.7 378 589-1074 62-444 (486)
3 KOG4626 O-linked N-acetylgluco 100.0 3.6E-30 7.8E-35 295.2 28.8 298 608-948 116-425 (966)
4 KOG4626 O-linked N-acetylgluco 100.0 1.5E-29 3.2E-34 290.3 27.9 328 578-948 133-493 (966)
5 TIGR00990 3a0801s09 mitochondr 99.9 2.5E-24 5.4E-29 268.2 43.2 314 575-945 141-501 (615)
6 COG0484 DnaJ DnaJ-class molecu 99.9 1.5E-26 3.2E-31 261.7 11.6 152 984-1165 4-162 (371)
7 KOG0548 Molecular co-chaperone 99.9 3.7E-23 8.1E-28 238.2 33.1 336 576-947 17-462 (539)
8 PRK15174 Vi polysaccharide exp 99.9 3E-22 6.5E-27 250.5 40.5 313 591-946 57-387 (656)
9 TIGR00990 3a0801s09 mitochondr 99.9 2E-22 4.4E-27 251.0 36.6 264 622-946 308-577 (615)
10 PRK11447 cellulose synthase su 99.9 9E-22 2E-26 260.9 38.3 306 609-944 352-704 (1157)
11 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-20 2.5E-25 240.6 44.1 343 576-948 412-807 (899)
12 PRK15174 Vi polysaccharide exp 99.9 2.5E-21 5.4E-26 242.2 36.5 359 612-1063 46-410 (656)
13 PRK11447 cellulose synthase su 99.9 3.1E-21 6.7E-26 255.9 38.1 312 612-949 273-641 (1157)
14 TIGR02917 PEP_TPR_lipo putativ 99.9 6.4E-21 1.4E-25 242.9 36.5 297 608-947 22-331 (899)
15 PRK10049 pgaA outer membrane p 99.9 2.8E-19 6E-24 227.9 37.5 313 609-947 84-463 (765)
16 KOG0547 Translocase of outer m 99.9 1.5E-19 3.2E-24 205.3 30.7 312 590-944 129-495 (606)
17 PRK11788 tetratricopeptide rep 99.9 3.5E-19 7.5E-24 208.8 34.7 280 610-946 37-317 (389)
18 KOG1126 DNA-binding cell divis 99.9 1.3E-19 2.8E-24 213.5 28.5 268 615-948 326-594 (638)
19 PRK10049 pgaA outer membrane p 99.8 1.3E-18 2.7E-23 221.9 35.4 307 604-948 45-396 (765)
20 KOG2002 TPR-containing nuclear 99.8 4.9E-18 1.1E-22 205.9 35.7 360 566-948 135-567 (1018)
21 PRK14296 chaperone protein Dna 99.8 7.2E-21 1.6E-25 221.7 10.4 149 984-1156 4-160 (372)
22 PRK09782 bacteriophage N4 rece 99.8 2E-18 4.4E-23 221.7 32.2 270 607-945 476-745 (987)
23 KOG1126 DNA-binding cell divis 99.8 4.9E-19 1.1E-23 208.7 21.3 274 608-946 353-626 (638)
24 PRK14288 chaperone protein Dna 99.8 1.3E-20 2.8E-25 219.5 8.1 143 984-1156 3-151 (369)
25 PRK14286 chaperone protein Dna 99.8 2.7E-20 5.9E-25 217.0 10.4 149 984-1157 4-162 (372)
26 PRK14277 chaperone protein Dna 99.8 4.4E-20 9.5E-25 216.4 11.1 153 984-1157 5-167 (386)
27 PRK14285 chaperone protein Dna 99.8 6E-20 1.3E-24 213.7 11.5 150 984-1158 3-159 (365)
28 PRK09782 bacteriophage N4 rece 99.8 7E-18 1.5E-22 216.7 31.5 263 621-952 451-718 (987)
29 PRK14279 chaperone protein Dna 99.8 5E-20 1.1E-24 216.0 10.8 162 984-1165 9-193 (392)
30 PRK11788 tetratricopeptide rep 99.8 3.3E-17 7.3E-22 192.0 34.5 285 577-939 51-346 (389)
31 PRK14282 chaperone protein Dna 99.8 8.2E-20 1.8E-24 213.1 10.7 152 984-1156 4-163 (369)
32 KOG2076 RNA polymerase III tra 99.8 2.7E-17 5.9E-22 198.7 30.9 300 612-938 143-510 (895)
33 PRK14276 chaperone protein Dna 99.8 1.2E-19 2.7E-24 212.2 10.7 148 984-1156 4-157 (380)
34 PRK14287 chaperone protein Dna 99.8 1.2E-19 2.7E-24 211.5 10.3 140 984-1156 4-149 (371)
35 KOG0712 Molecular chaperone (D 99.8 1.1E-19 2.4E-24 203.5 8.6 137 984-1160 4-142 (337)
36 PRK14297 chaperone protein Dna 99.8 2.1E-19 4.5E-24 210.5 10.9 147 984-1156 4-159 (380)
37 PRK14284 chaperone protein Dna 99.8 1.8E-19 4E-24 211.6 9.9 155 985-1160 2-173 (391)
38 PTZ00037 DnaJ_C chaperone prot 99.8 1.7E-19 3.6E-24 212.2 9.5 132 983-1156 27-161 (421)
39 PRK14278 chaperone protein Dna 99.8 2.9E-19 6.4E-24 208.8 10.5 140 984-1155 3-149 (378)
40 PRK14280 chaperone protein Dna 99.8 3E-19 6.4E-24 208.8 10.5 145 984-1156 4-154 (376)
41 PRK14298 chaperone protein Dna 99.8 3.2E-19 7E-24 208.3 10.7 143 984-1156 5-152 (377)
42 PRK14301 chaperone protein Dna 99.8 3.7E-19 8.1E-24 207.6 10.7 146 984-1157 4-156 (373)
43 KOG2002 TPR-containing nuclear 99.8 6.6E-17 1.4E-21 196.3 29.6 82 608-689 307-389 (1018)
44 KOG1155 Anaphase-promoting com 99.8 1.8E-16 3.9E-21 179.7 31.0 285 613-940 232-536 (559)
45 PRK14295 chaperone protein Dna 99.8 4.6E-19 9.9E-24 207.8 10.5 158 984-1163 9-184 (389)
46 PRK14291 chaperone protein Dna 99.8 6.3E-19 1.4E-23 206.4 10.5 146 984-1156 3-167 (382)
47 KOG1155 Anaphase-promoting com 99.8 6.1E-16 1.3E-20 175.5 33.8 284 607-940 163-495 (559)
48 PRK10767 chaperone protein Dna 99.8 1.1E-18 2.4E-23 204.0 10.5 146 984-1157 4-154 (371)
49 PRK14294 chaperone protein Dna 99.8 1.2E-18 2.5E-23 203.3 9.7 145 984-1157 4-156 (366)
50 PRK14281 chaperone protein Dna 99.8 1.8E-18 4E-23 203.4 10.7 148 984-1156 3-174 (397)
51 PRK12370 invasion protein regu 99.8 2.9E-16 6.4E-21 193.4 30.5 259 609-933 259-529 (553)
52 PRK14283 chaperone protein Dna 99.8 1.7E-18 3.6E-23 202.8 9.9 150 984-1157 5-158 (378)
53 KOG0550 Molecular chaperone (D 99.7 1.3E-16 2.8E-21 179.0 23.9 183 710-920 181-363 (486)
54 TIGR02349 DnaJ_bact chaperone 99.7 3E-18 6.4E-23 199.4 10.5 147 985-1157 1-155 (354)
55 PRK14300 chaperone protein Dna 99.7 2.6E-18 5.5E-23 200.7 9.4 153 984-1165 3-165 (372)
56 PRK14289 chaperone protein Dna 99.7 4.1E-18 8.9E-23 200.1 10.4 148 984-1159 5-168 (386)
57 PRK14290 chaperone protein Dna 99.7 5.4E-18 1.2E-22 197.6 10.8 145 984-1156 3-160 (365)
58 KOG0547 Translocase of outer m 99.7 1.8E-16 3.8E-21 180.6 21.7 242 610-946 328-572 (606)
59 KOG0713 Molecular chaperone (D 99.7 6.3E-18 1.4E-22 186.9 7.3 69 984-1072 16-84 (336)
60 PF13429 TPR_15: Tetratricopep 99.7 3.5E-17 7.7E-22 184.3 12.6 263 613-940 13-277 (280)
61 KOG1129 TPR repeat-containing 99.7 4.9E-16 1.1E-20 169.4 20.3 273 616-951 187-469 (478)
62 PRK14292 chaperone protein Dna 99.7 2E-17 4.3E-22 193.6 10.1 141 984-1156 2-150 (371)
63 PRK14293 chaperone protein Dna 99.7 1.8E-17 3.9E-22 193.8 9.7 147 984-1163 3-161 (374)
64 KOG0624 dsRNA-activated protei 99.7 7.5E-15 1.6E-19 161.1 28.9 276 608-948 38-344 (504)
65 KOG1173 Anaphase-promoting com 99.7 3E-15 6.4E-20 173.8 27.2 274 611-946 247-524 (611)
66 KOG1125 TPR repeat-containing 99.7 9.7E-16 2.1E-20 178.6 23.4 263 612-971 289-555 (579)
67 KOG0548 Molecular co-chaperone 99.7 1.9E-14 4.1E-19 166.9 33.7 314 613-948 7-429 (539)
68 PRK14574 hmsH outer membrane p 99.7 1.6E-14 3.6E-19 182.7 36.4 369 571-947 44-520 (822)
69 PRK11189 lipoprotein NlpI; Pro 99.7 5.4E-15 1.2E-19 168.4 26.2 217 610-925 66-285 (296)
70 PRK12370 invasion protein regu 99.7 9.7E-15 2.1E-19 180.0 29.3 239 646-941 262-503 (553)
71 TIGR02521 type_IV_pilW type IV 99.7 1.6E-14 3.6E-19 153.7 27.0 202 609-941 32-233 (234)
72 PRK14574 hmsH outer membrane p 99.7 2.3E-13 4.9E-18 172.4 41.3 360 577-947 38-486 (822)
73 TIGR00540 hemY_coli hemY prote 99.6 6.1E-14 1.3E-18 166.8 29.6 288 611-940 87-399 (409)
74 KOG1174 Anaphase-promoting com 99.6 6.5E-14 1.4E-18 157.0 27.6 298 605-946 192-506 (564)
75 PRK14299 chaperone protein Dna 99.6 5.6E-16 1.2E-20 175.5 10.5 138 984-1145 4-155 (291)
76 PRK11189 lipoprotein NlpI; Pro 99.6 9.9E-14 2.1E-18 158.0 28.2 80 596-675 84-165 (296)
77 KOG1173 Anaphase-promoting com 99.6 4.5E-14 9.7E-19 164.1 24.3 253 609-920 280-532 (611)
78 KOG1840 Kinesin light chain [C 99.6 1E-13 2.2E-18 165.7 27.8 264 611-945 202-484 (508)
79 PRK10747 putative protoheme IX 99.6 3.1E-13 6.8E-18 160.2 31.0 287 611-941 87-391 (398)
80 KOG2003 TPR repeat-containing 99.6 3.4E-13 7.3E-18 151.7 28.6 272 612-948 423-697 (840)
81 KOG2076 RNA polymerase III tra 99.6 1.2E-12 2.5E-17 159.2 34.6 333 576-938 154-553 (895)
82 KOG0715 Molecular chaperone (D 99.6 9.2E-16 2E-20 172.4 7.4 141 984-1165 43-184 (288)
83 PRK10266 curved DNA-binding pr 99.6 3.3E-15 7.1E-20 170.5 11.1 136 984-1146 4-144 (306)
84 KOG4162 Predicted calmodulin-b 99.6 4.2E-13 9E-18 160.7 29.0 283 623-945 459-788 (799)
85 KOG1129 TPR repeat-containing 99.6 2.9E-14 6.2E-19 155.8 15.0 249 609-920 223-472 (478)
86 KOG0553 TPR repeat-containing 99.6 1.9E-14 4E-19 157.7 12.3 123 835-974 77-199 (304)
87 KOG0495 HAT repeat protein [RN 99.6 8.2E-12 1.8E-16 146.5 34.6 331 577-948 515-888 (913)
88 PLN02789 farnesyltranstransfer 99.5 1.2E-12 2.6E-17 150.2 26.4 218 616-923 45-267 (320)
89 COG2956 Predicted N-acetylgluc 99.5 4.5E-12 9.8E-17 139.3 29.5 276 612-943 39-314 (389)
90 KOG2003 TPR repeat-containing 99.5 4.1E-12 8.9E-17 143.1 29.3 319 610-947 278-628 (840)
91 PF13429 TPR_15: Tetratricopep 99.5 2E-14 4.3E-19 162.0 10.6 233 607-906 43-277 (280)
92 KOG1125 TPR repeat-containing 99.5 4.1E-13 8.8E-18 157.0 20.9 228 577-909 301-530 (579)
93 TIGR02521 type_IV_pilW type IV 99.5 1E-12 2.2E-17 139.9 21.1 174 731-945 30-203 (234)
94 KOG1130 Predicted G-alpha GTPa 99.5 8.5E-13 1.9E-17 147.7 20.8 294 614-943 23-347 (639)
95 KOG0495 HAT repeat protein [RN 99.5 2.2E-11 4.7E-16 143.0 32.8 376 591-1016 391-786 (913)
96 TIGR00540 hemY_coli hemY prote 99.5 1.1E-11 2.4E-16 147.6 30.7 256 611-906 121-399 (409)
97 COG3063 PilF Tfp pilus assembl 99.5 3.5E-12 7.5E-17 135.3 22.6 203 703-946 40-242 (250)
98 cd05804 StaR_like StaR_like; a 99.5 1.1E-10 2.4E-15 135.4 35.3 298 613-941 11-337 (355)
99 PRK10747 putative protoheme IX 99.4 8E-11 1.7E-15 139.7 31.5 247 614-907 124-391 (398)
100 KOG1174 Anaphase-promoting com 99.4 1.1E-10 2.3E-15 131.6 30.2 317 609-944 98-471 (564)
101 KOG4162 Predicted calmodulin-b 99.4 6.5E-11 1.4E-15 142.2 30.2 211 714-952 460-761 (799)
102 COG3063 PilF Tfp pilus assembl 99.4 2.2E-11 4.8E-16 129.2 22.8 205 611-912 38-242 (250)
103 TIGR03302 OM_YfiO outer membra 99.4 2.4E-11 5.1E-16 133.1 23.7 69 608-676 33-104 (235)
104 PLN02789 farnesyltranstransfer 99.4 7.1E-12 1.5E-16 143.8 20.0 191 711-944 50-254 (320)
105 PRK14720 transcript cleavage f 99.4 3.3E-11 7.2E-16 151.5 23.7 247 608-947 31-313 (906)
106 KOG1127 TPR repeat-containing 99.4 3.1E-11 6.7E-16 147.1 22.4 324 620-949 470-888 (1238)
107 KOG1156 N-terminal acetyltrans 99.4 1.1E-10 2.4E-15 138.0 26.2 280 609-945 8-288 (700)
108 KOG1840 Kinesin light chain [C 99.4 1.8E-10 3.8E-15 138.2 28.2 209 710-941 211-439 (508)
109 KOG0716 Molecular chaperone (D 99.4 6.5E-13 1.4E-17 143.0 5.9 70 983-1072 30-99 (279)
110 COG2956 Predicted N-acetylgluc 99.3 2.5E-10 5.4E-15 125.8 25.5 202 711-947 48-250 (389)
111 KOG1156 N-terminal acetyltrans 99.3 5.6E-10 1.2E-14 132.1 29.9 308 610-944 43-438 (700)
112 PF12569 NARP1: NMDA receptor- 99.3 1.1E-09 2.5E-14 132.5 32.7 309 610-946 6-340 (517)
113 PLN03218 maturation of RBCL 1; 99.3 2.8E-09 6E-14 139.1 36.8 290 609-940 473-783 (1060)
114 TIGR03302 OM_YfiO outer membra 99.3 1E-10 2.2E-15 128.2 20.1 183 727-942 28-234 (235)
115 KOG0718 Molecular chaperone (D 99.3 1.6E-12 3.5E-17 147.8 5.9 72 984-1072 9-80 (546)
116 KOG0717 Molecular chaperone (D 99.3 1.6E-12 3.5E-17 147.9 5.6 69 984-1071 8-76 (508)
117 PLN03081 pentatricopeptide (PP 99.3 5.3E-10 1.2E-14 142.0 28.0 283 609-940 260-557 (697)
118 PLN03218 maturation of RBCL 1; 99.3 6.9E-09 1.5E-13 135.4 37.6 290 609-940 438-748 (1060)
119 cd05804 StaR_like StaR_like; a 99.3 5.9E-10 1.3E-14 129.4 24.7 216 637-908 1-217 (355)
120 KOG0691 Molecular chaperone (D 99.3 4.4E-12 9.6E-17 141.6 5.8 70 983-1072 4-73 (296)
121 KOG2376 Signal recognition par 99.2 7.5E-09 1.6E-13 121.7 31.2 294 615-938 19-403 (652)
122 PRK15359 type III secretion sy 99.2 1.8E-10 3.8E-15 117.5 15.7 103 842-948 27-129 (144)
123 KOG1130 Predicted G-alpha GTPa 99.2 2E-10 4.3E-15 129.1 17.0 288 610-937 57-381 (639)
124 PLN03077 Protein ECB2; Provisi 99.2 4.2E-09 9.2E-14 136.9 32.2 282 609-940 425-720 (857)
125 PF00226 DnaJ: DnaJ domain; I 99.2 8.2E-12 1.8E-16 109.3 4.9 64 985-1067 1-64 (64)
126 PRK15359 type III secretion sy 99.2 1.2E-10 2.7E-15 118.7 14.0 113 795-925 28-140 (144)
127 PTZ00341 Ring-infected erythro 99.2 1.3E-11 2.7E-16 151.8 6.3 68 983-1071 572-639 (1136)
128 KOG4234 TPR repeat-containing 99.2 1.9E-10 4.2E-15 119.1 13.9 112 836-947 92-204 (271)
129 KOG1127 TPR repeat-containing 99.2 1.9E-09 4.2E-14 131.9 24.1 275 622-944 382-663 (1238)
130 PLN03081 pentatricopeptide (PP 99.2 5E-09 1.1E-13 133.2 29.4 280 609-939 159-454 (697)
131 KOG0719 Molecular chaperone (D 99.2 1.7E-11 3.7E-16 128.9 5.0 70 984-1071 14-83 (264)
132 COG3071 HemY Uncharacterized e 99.2 2.4E-08 5.2E-13 113.5 30.3 286 612-940 88-390 (400)
133 PRK15179 Vi polysaccharide bio 99.2 1.4E-09 3E-14 136.2 22.4 161 714-917 68-228 (694)
134 KOG3785 Uncharacterized conser 99.2 6.2E-09 1.3E-13 115.5 24.2 150 614-767 63-220 (557)
135 PRK10370 formate-dependent nit 99.2 8.5E-10 1.9E-14 118.6 16.9 147 796-946 21-179 (198)
136 KOG0543 FKBP-type peptidyl-pro 99.1 4.5E-10 9.7E-15 128.2 14.2 110 839-948 208-328 (397)
137 PRK10370 formate-dependent nit 99.1 1.3E-09 2.8E-14 117.2 16.8 125 621-766 52-178 (198)
138 KOG0553 TPR repeat-containing 99.1 1.6E-10 3.5E-15 127.1 9.9 95 576-683 96-190 (304)
139 PRK04841 transcriptional regul 99.1 3.3E-08 7.1E-13 129.2 32.5 290 611-943 455-763 (903)
140 PRK15363 pathogenicity island 99.1 2.2E-09 4.8E-14 109.5 15.1 103 836-942 32-134 (157)
141 PF12569 NARP1: NMDA receptor- 99.1 6E-08 1.3E-12 117.8 29.6 253 641-944 3-261 (517)
142 PLN03077 Protein ECB2; Provisi 99.1 5.8E-08 1.2E-12 126.4 31.3 277 609-939 324-617 (857)
143 TIGR02552 LcrH_SycD type III s 99.1 1.9E-09 4.2E-14 107.4 13.6 107 836-946 14-120 (135)
144 PLN03088 SGT1, suppressor of 99.0 2.1E-09 4.6E-14 125.7 14.5 103 842-948 5-107 (356)
145 KOG2376 Signal recognition par 99.0 6.1E-07 1.3E-11 106.0 34.2 331 612-948 83-495 (652)
146 KOG4648 Uncharacterized conser 99.0 1.7E-10 3.7E-15 127.1 4.4 237 611-946 100-336 (536)
147 PRK15179 Vi polysaccharide bio 99.0 5.9E-09 1.3E-13 130.6 18.3 135 608-764 86-220 (694)
148 PF04733 Coatomer_E: Coatomer 99.0 2E-09 4.3E-14 122.3 12.2 255 616-944 9-269 (290)
149 smart00271 DnaJ DnaJ molecular 99.0 7.7E-10 1.7E-14 95.4 6.6 59 985-1062 2-60 (60)
150 KOG4648 Uncharacterized conser 99.0 1.4E-09 3E-14 120.2 9.8 104 841-948 99-202 (536)
151 PHA03102 Small T antigen; Revi 99.0 5.2E-10 1.1E-14 113.9 5.4 63 985-1071 6-70 (153)
152 KOG1128 Uncharacterized conser 99.0 1.1E-08 2.3E-13 123.0 17.2 225 639-943 395-619 (777)
153 PF14938 SNAP: Soluble NSF att 98.9 9.7E-08 2.1E-12 108.3 23.4 217 647-941 40-267 (282)
154 TIGR03835 termin_org_DnaJ term 98.9 7.6E-10 1.6E-14 133.8 6.0 67 984-1071 2-68 (871)
155 cd06257 DnaJ DnaJ domain or J- 98.9 1.8E-09 3.9E-14 91.3 6.4 55 985-1059 1-55 (55)
156 PRK04841 transcriptional regul 98.9 7.6E-07 1.7E-11 116.5 33.5 290 610-942 411-722 (903)
157 PRK05014 hscB co-chaperone Hsc 98.9 1.7E-09 3.6E-14 113.3 6.8 72 985-1071 2-75 (171)
158 KOG4340 Uncharacterized conser 98.9 9.5E-07 2.1E-11 96.7 27.6 204 609-816 45-266 (459)
159 TIGR02552 LcrH_SycD type III s 98.9 2.2E-08 4.7E-13 99.8 14.2 117 629-767 4-120 (135)
160 KOG3060 Uncharacterized conser 98.9 2.4E-07 5.1E-12 100.0 21.8 92 851-946 132-226 (289)
161 COG2214 CbpA DnaJ-class molecu 98.9 1.9E-09 4.1E-14 116.2 6.0 66 984-1069 6-72 (237)
162 COG5010 TadD Flp pilus assembl 98.9 5.3E-08 1.1E-12 105.8 16.5 179 714-936 49-227 (257)
163 KOG3060 Uncharacterized conser 98.9 1.1E-06 2.3E-11 95.1 25.7 174 708-924 62-238 (289)
164 PRK01356 hscB co-chaperone Hsc 98.9 2.6E-09 5.5E-14 111.2 5.8 70 984-1070 2-73 (166)
165 COG4783 Putative Zn-dependent 98.8 4E-07 8.6E-12 106.2 23.0 158 634-869 298-455 (484)
166 PRK10866 outer membrane biogen 98.8 6.6E-07 1.4E-11 99.4 23.9 69 608-676 32-103 (243)
167 PF13525 YfiO: Outer membrane 98.8 4.8E-07 1E-11 97.7 22.2 70 607-676 4-76 (203)
168 PF13414 TPR_11: TPR repeat; P 98.8 1.5E-08 3.2E-13 89.4 8.6 67 876-942 2-69 (69)
169 KOG1128 Uncharacterized conser 98.8 7.6E-07 1.7E-11 107.4 25.4 211 612-870 402-618 (777)
170 KOG0720 Molecular chaperone (D 98.8 4.2E-09 9.1E-14 120.8 6.0 69 983-1072 234-302 (490)
171 cd00189 TPR Tetratricopeptide 98.8 4.3E-08 9.2E-13 87.6 11.3 97 842-942 3-99 (100)
172 KOG0721 Molecular chaperone (D 98.8 4.1E-09 8.9E-14 110.5 5.1 73 984-1076 99-171 (230)
173 PF14938 SNAP: Soluble NSF att 98.8 1.8E-07 3.9E-12 106.1 17.7 190 713-944 30-229 (282)
174 PLN03088 SGT1, suppressor of 98.8 1.1E-07 2.4E-12 111.4 16.3 114 611-746 5-118 (356)
175 KOG1915 Cell cycle control pro 98.8 5.4E-05 1.2E-09 87.7 36.9 347 595-950 92-476 (677)
176 PF13414 TPR_11: TPR repeat; P 98.8 2.3E-08 5E-13 88.2 7.9 66 608-673 3-69 (69)
177 PRK03578 hscB co-chaperone Hsc 98.8 1.1E-08 2.4E-13 107.4 6.8 74 983-1071 5-80 (176)
178 COG5010 TadD Flp pilus assembl 98.8 5.2E-07 1.1E-11 98.3 19.6 181 624-866 49-229 (257)
179 PRK00294 hscB co-chaperone Hsc 98.7 1.1E-08 2.4E-13 107.0 6.4 73 984-1071 4-78 (173)
180 COG3071 HemY Uncharacterized e 98.7 7E-06 1.5E-10 93.8 28.9 249 611-906 121-390 (400)
181 TIGR02795 tol_pal_ybgF tol-pal 98.7 1.8E-07 3.9E-12 90.3 13.9 67 608-674 2-71 (119)
182 KOG4340 Uncharacterized conser 98.7 2.4E-07 5.1E-12 101.3 15.9 194 711-935 23-265 (459)
183 TIGR02795 tol_pal_ybgF tol-pal 98.7 1.1E-07 2.3E-12 91.8 12.2 106 840-946 3-111 (119)
184 KOG0722 Molecular chaperone (D 98.7 4.9E-09 1.1E-13 111.4 2.7 67 984-1071 33-99 (329)
185 PRK02603 photosystem I assembl 98.7 1.3E-07 2.9E-12 99.1 13.5 95 832-927 28-122 (172)
186 COG0457 NrfG FOG: TPR repeat [ 98.7 2.5E-05 5.4E-10 79.9 29.8 193 711-943 72-268 (291)
187 KOG0714 Molecular chaperone (D 98.7 1.6E-08 3.4E-13 114.2 6.0 69 984-1071 3-71 (306)
188 KOG1941 Acetylcholine receptor 98.7 8.4E-06 1.8E-10 91.6 26.6 290 612-941 47-361 (518)
189 PRK14720 transcript cleavage f 98.7 9.2E-07 2E-11 112.1 21.5 154 726-940 25-178 (906)
190 COG4783 Putative Zn-dependent 98.7 1.3E-06 2.7E-11 102.1 20.6 128 795-940 310-437 (484)
191 PRK15363 pathogenicity island 98.7 2.7E-07 5.9E-12 94.4 13.2 99 609-763 36-134 (157)
192 KOG0551 Hsp90 co-chaperone CNS 98.7 3.8E-07 8.3E-12 101.5 15.3 110 838-947 80-189 (390)
193 CHL00033 ycf3 photosystem I as 98.7 3.4E-07 7.4E-12 95.5 14.2 112 834-946 30-148 (168)
194 PF12895 Apc3: Anaphase-promot 98.6 9.8E-08 2.1E-12 88.0 8.7 84 851-937 1-84 (84)
195 KOG0543 FKBP-type peptidyl-pro 98.6 3.9E-07 8.4E-12 104.5 14.7 147 794-944 211-359 (397)
196 KOG1941 Acetylcholine receptor 98.6 6.3E-06 1.4E-10 92.5 23.0 184 732-943 83-278 (518)
197 COG4235 Cytochrome c biogenesi 98.6 8.2E-07 1.8E-11 98.9 15.9 125 624-767 138-262 (287)
198 KOG1915 Cell cycle control pro 98.6 0.00014 3.1E-09 84.3 33.9 190 721-940 311-500 (677)
199 PF13432 TPR_16: Tetratricopep 98.6 1.1E-07 2.4E-12 83.0 7.2 64 612-675 1-64 (65)
200 KOG4642 Chaperone-dependent E3 98.6 1.6E-07 3.4E-12 100.5 9.4 121 839-971 10-130 (284)
201 KOG3785 Uncharacterized conser 98.6 1.6E-06 3.5E-11 96.7 17.6 185 711-924 35-232 (557)
202 cd00189 TPR Tetratricopeptide 98.6 7.3E-07 1.6E-11 79.5 11.9 65 610-674 2-66 (100)
203 COG0457 NrfG FOG: TPR repeat [ 98.6 0.00021 4.5E-09 73.0 31.5 239 621-924 36-279 (291)
204 KOG2047 mRNA splicing factor [ 98.5 0.00042 9E-09 83.2 36.9 331 576-943 208-582 (835)
205 PRK09430 djlA Dna-J like membr 98.5 3.9E-07 8.5E-12 102.2 11.1 64 983-1059 199-262 (267)
206 PRK02603 photosystem I assembl 98.5 2.4E-06 5.2E-11 89.7 16.4 118 606-731 33-153 (172)
207 PF09976 TPR_21: Tetratricopep 98.5 4.9E-06 1.1E-10 84.9 18.0 120 710-866 23-145 (145)
208 PRK10153 DNA-binding transcrip 98.5 1.5E-06 3.3E-11 106.2 16.7 138 607-767 338-488 (517)
209 KOG4234 TPR repeat-containing 98.5 5.9E-07 1.3E-11 93.7 10.8 86 593-678 112-204 (271)
210 PRK15331 chaperone protein Sic 98.5 1.2E-06 2.6E-11 90.2 13.0 100 836-939 34-133 (165)
211 PF13432 TPR_16: Tetratricopep 98.5 3.8E-07 8.1E-12 79.6 7.6 63 882-944 2-64 (65)
212 PRK10866 outer membrane biogen 98.5 3.6E-05 7.8E-10 85.6 24.6 170 710-936 44-237 (243)
213 PF13525 YfiO: Outer membrane 98.5 2E-05 4.4E-10 85.1 21.8 163 711-930 18-197 (203)
214 KOG2047 mRNA splicing factor [ 98.5 9.2E-05 2E-09 88.5 28.4 273 642-948 248-550 (835)
215 PF09976 TPR_21: Tetratricopep 98.5 8.4E-06 1.8E-10 83.1 17.6 129 611-759 14-145 (145)
216 PRK10803 tol-pal system protei 98.4 2E-06 4.4E-11 96.4 14.0 104 842-946 145-252 (263)
217 PTZ00100 DnaJ chaperone protei 98.4 2.3E-07 5E-12 90.0 5.5 51 984-1058 65-115 (116)
218 COG4785 NlpI Lipoprotein NlpI, 98.4 1E-05 2.2E-10 85.7 17.9 103 609-733 66-168 (297)
219 PF04733 Coatomer_E: Coatomer 98.4 1.8E-06 3.9E-11 98.3 13.6 229 611-912 38-271 (290)
220 PHA02624 large T antigen; Prov 98.4 1.9E-07 4.2E-12 112.6 5.6 59 984-1066 11-71 (647)
221 PRK11906 transcriptional regul 98.4 6.1E-06 1.3E-10 97.0 17.6 134 610-765 257-405 (458)
222 PRK10803 tol-pal system protei 98.4 3.9E-06 8.5E-11 94.1 14.9 104 609-765 143-250 (263)
223 KOG3617 WD40 and TPR repeat-co 98.4 2.8E-05 6E-10 94.3 22.4 274 617-938 835-1172(1416)
224 COG4235 Cytochrome c biogenesi 98.4 3.4E-06 7.3E-11 94.1 13.9 112 831-946 148-262 (287)
225 KOG1070 rRNA processing protei 98.4 7E-05 1.5E-09 95.7 26.7 264 617-940 1433-1700(1710)
226 CHL00033 ycf3 photosystem I as 98.4 1E-05 2.2E-10 84.4 16.4 109 608-731 35-153 (168)
227 KOG0545 Aryl-hydrocarbon recep 98.4 3.9E-06 8.4E-11 90.1 12.6 108 839-946 178-299 (329)
228 COG5407 SEC63 Preprotein trans 98.3 3.5E-07 7.6E-12 104.2 4.9 89 984-1087 98-186 (610)
229 KOG4555 TPR repeat-containing 98.3 7.1E-06 1.5E-10 80.5 11.9 95 843-941 47-145 (175)
230 PF12895 Apc3: Anaphase-promot 98.3 1.4E-06 3.1E-11 80.2 6.5 81 711-817 2-84 (84)
231 TIGR00714 hscB Fe-S protein as 98.3 1E-06 2.2E-11 91.2 5.7 61 996-1071 3-63 (157)
232 PRK11906 transcriptional regul 98.3 2.4E-05 5.2E-10 92.1 17.3 149 711-936 271-432 (458)
233 PF13424 TPR_12: Tetratricopep 98.2 2.9E-06 6.3E-11 76.7 7.6 69 874-942 2-77 (78)
234 PRK10153 DNA-binding transcrip 98.2 1E-05 2.2E-10 99.0 14.5 138 792-946 340-488 (517)
235 KOG3617 WD40 and TPR repeat-co 98.2 0.0001 2.2E-09 89.5 21.5 285 609-937 758-1106(1416)
236 COG3898 Uncharacterized membra 98.2 0.00064 1.4E-08 77.6 26.4 260 611-940 123-392 (531)
237 KOG3081 Vesicle coat complex C 98.2 0.00033 7.1E-09 76.8 23.0 247 616-934 16-264 (299)
238 PF14559 TPR_19: Tetratricopep 98.2 4.6E-06 1E-10 73.2 7.3 60 618-677 1-60 (68)
239 COG4785 NlpI Lipoprotein NlpI, 98.2 5.4E-05 1.2E-09 80.3 16.1 200 642-908 65-268 (297)
240 PRK01773 hscB co-chaperone Hsc 98.2 2.5E-06 5.4E-11 89.5 6.3 72 984-1070 2-75 (173)
241 KOG0376 Serine-threonine phosp 98.2 1.3E-06 2.9E-11 101.9 4.2 105 840-948 5-109 (476)
242 PF13371 TPR_9: Tetratricopept 98.1 9.1E-06 2E-10 72.3 8.5 70 846-919 2-71 (73)
243 KOG2796 Uncharacterized conser 98.1 0.00053 1.2E-08 74.8 23.1 165 715-921 166-333 (366)
244 KOG2053 Mitochondrial inherita 98.1 0.0011 2.4E-08 82.4 28.2 231 619-910 20-259 (932)
245 PF13371 TPR_9: Tetratricopept 98.1 1.1E-05 2.4E-10 71.8 8.4 63 615-677 2-64 (73)
246 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 3.6E-05 7.7E-10 90.8 14.9 119 797-936 175-293 (395)
247 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.3E-05 2.8E-10 94.1 10.9 68 605-672 72-142 (453)
248 COG1729 Uncharacterized protei 98.1 2.2E-05 4.7E-10 86.8 11.9 104 842-946 144-250 (262)
249 PF12688 TPR_5: Tetratrico pep 98.1 3.5E-05 7.5E-10 76.3 12.0 98 841-939 3-103 (120)
250 PF14559 TPR_19: Tetratricopep 98.1 7.4E-06 1.6E-10 71.8 6.5 66 850-919 2-67 (68)
251 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 9.4E-06 2E-10 95.3 9.1 69 834-906 70-141 (453)
252 PF13512 TPR_18: Tetratricopep 98.1 4.6E-05 1E-09 77.0 12.5 106 839-945 10-133 (142)
253 COG4105 ComL DNA uptake lipopr 98.1 0.00086 1.9E-08 73.8 23.0 70 606-675 32-104 (254)
254 PF12688 TPR_5: Tetratrico pep 98.0 7.3E-05 1.6E-09 74.0 13.5 66 609-674 2-70 (120)
255 PF13424 TPR_12: Tetratricopep 98.0 1.6E-05 3.5E-10 71.9 7.3 71 837-907 3-76 (78)
256 KOG2471 TPR repeat-containing 98.0 7.9E-05 1.7E-09 86.6 14.5 161 733-924 207-382 (696)
257 COG1729 Uncharacterized protei 98.0 7.1E-05 1.5E-09 82.8 13.6 103 611-766 144-249 (262)
258 KOG1070 rRNA processing protei 98.0 0.00037 8E-09 89.4 20.8 196 714-949 1440-1638(1710)
259 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 7.2E-05 1.6E-09 88.3 14.0 89 797-903 206-294 (395)
260 KOG2471 TPR repeat-containing 98.0 0.00025 5.5E-09 82.5 17.4 313 609-937 241-681 (696)
261 COG3898 Uncharacterized membra 97.9 0.0065 1.4E-07 69.7 27.8 267 614-944 90-362 (531)
262 PF13512 TPR_18: Tetratricopep 97.9 0.00019 4.2E-09 72.6 13.8 70 607-676 9-81 (142)
263 COG4700 Uncharacterized protei 97.9 0.00055 1.2E-08 71.4 16.5 153 588-761 68-222 (251)
264 KOG3081 Vesicle coat complex C 97.9 0.0016 3.5E-08 71.5 20.6 204 710-947 20-243 (299)
265 KOG1308 Hsp70-interacting prot 97.8 9.7E-06 2.1E-10 91.1 3.5 96 843-942 118-213 (377)
266 PF06552 TOM20_plant: Plant sp 97.8 0.00017 3.7E-09 75.2 11.2 87 855-945 7-114 (186)
267 COG5269 ZUO1 Ribosome-associat 97.8 2.3E-05 5E-10 84.4 4.9 68 984-1069 43-113 (379)
268 PRK15331 chaperone protein Sic 97.7 0.0004 8.6E-09 71.9 13.0 88 707-819 46-133 (165)
269 KOG1586 Protein required for f 97.7 0.0023 4.9E-08 69.1 18.7 103 844-946 118-230 (288)
270 COG4700 Uncharacterized protei 97.7 0.004 8.6E-08 65.2 19.2 130 795-940 93-222 (251)
271 KOG2300 Uncharacterized conser 97.7 0.032 7E-07 65.7 28.6 318 610-941 9-397 (629)
272 KOG1585 Protein required for f 97.6 0.0077 1.7E-07 65.5 21.3 140 642-816 31-175 (308)
273 KOG1586 Protein required for f 97.6 0.0084 1.8E-07 64.9 21.3 173 710-908 85-267 (288)
274 PF10345 Cohesin_load: Cohesin 97.6 0.054 1.2E-06 68.4 31.9 302 609-941 60-434 (608)
275 COG2909 MalT ATP-dependent tra 97.6 0.043 9.3E-07 69.1 29.8 207 710-944 427-651 (894)
276 KOG4555 TPR repeat-containing 97.6 0.0017 3.7E-08 64.2 13.8 104 795-912 47-150 (175)
277 KOG1150 Predicted molecular ch 97.6 8.8E-05 1.9E-09 77.1 5.3 66 983-1067 52-117 (250)
278 COG4105 ComL DNA uptake lipopr 97.5 0.016 3.4E-07 64.1 22.6 173 710-940 46-232 (254)
279 KOG2300 Uncharacterized conser 97.5 0.2 4.3E-06 59.4 32.4 310 609-941 89-475 (629)
280 KOG0551 Hsp90 co-chaperone CNS 97.5 0.0005 1.1E-08 77.3 10.9 90 576-674 96-185 (390)
281 KOG2796 Uncharacterized conser 97.5 0.00097 2.1E-08 72.8 12.6 138 795-945 181-320 (366)
282 KOG0376 Serine-threonine phosp 97.5 0.00012 2.5E-09 86.1 5.1 98 574-684 17-114 (476)
283 PF02259 FAT: FAT domain; Int 97.5 0.063 1.4E-06 62.2 27.9 50 875-924 250-305 (352)
284 KOG1585 Protein required for f 97.4 0.011 2.4E-07 64.4 18.9 173 611-819 34-218 (308)
285 KOG3616 Selective LIM binding 97.4 0.018 3.9E-07 69.9 22.3 27 912-938 883-909 (1636)
286 KOG2053 Mitochondrial inherita 97.4 0.19 4.2E-06 63.3 31.9 84 578-674 26-109 (932)
287 KOG1550 Extracellular protein 97.4 0.033 7.2E-07 69.4 26.1 279 593-941 229-539 (552)
288 KOG4642 Chaperone-dependent E3 97.4 0.001 2.2E-08 72.0 10.8 83 576-671 25-107 (284)
289 PF04184 ST7: ST7 protein; In 97.4 0.0057 1.2E-07 72.6 17.1 207 710-938 180-412 (539)
290 PF13428 TPR_14: Tetratricopep 97.3 0.00043 9.4E-09 55.9 5.5 43 609-651 2-44 (44)
291 PF06552 TOM20_plant: Plant sp 97.3 0.0023 5E-08 66.9 12.0 52 714-765 51-113 (186)
292 KOG3616 Selective LIM binding 97.3 0.045 9.8E-07 66.6 23.7 125 793-936 663-790 (1636)
293 COG3118 Thioredoxin domain-con 97.2 0.037 8E-07 62.2 20.4 134 610-765 136-269 (304)
294 PF04184 ST7: ST7 protein; In 97.2 0.014 3E-07 69.5 17.8 54 617-672 177-230 (539)
295 PF10300 DUF3808: Protein of u 97.2 0.11 2.4E-06 63.5 26.6 125 804-942 246-378 (468)
296 PF00515 TPR_1: Tetratricopept 97.1 0.00067 1.4E-08 51.3 4.4 32 609-640 2-33 (34)
297 PF13428 TPR_14: Tetratricopep 97.1 0.00073 1.6E-08 54.6 4.8 42 878-919 2-43 (44)
298 PF13431 TPR_17: Tetratricopep 97.1 0.00046 1E-08 52.8 3.3 34 630-663 1-34 (34)
299 PF03704 BTAD: Bacterial trans 97.1 0.0095 2.1E-07 60.5 13.9 106 842-947 9-132 (146)
300 PF00515 TPR_1: Tetratricopept 97.1 0.00096 2.1E-08 50.4 4.7 32 878-909 2-33 (34)
301 PF13431 TPR_17: Tetratricopep 96.9 0.0007 1.5E-08 51.8 3.0 33 899-931 1-33 (34)
302 PF12968 DUF3856: Domain of Un 96.9 0.01 2.2E-07 57.9 11.2 102 842-943 12-132 (144)
303 KOG1789 Endocytosis protein RM 96.9 0.0013 2.8E-08 81.8 6.3 52 984-1058 1281-1336(2235)
304 KOG1463 26S proteasome regulat 96.9 0.3 6.5E-06 55.8 23.8 288 612-942 8-318 (411)
305 KOG1310 WD40 repeat protein [G 96.8 0.0033 7.2E-08 74.1 8.3 107 836-946 371-480 (758)
306 KOG0545 Aryl-hydrocarbon recep 96.8 0.032 7E-07 60.8 15.0 71 841-915 232-302 (329)
307 PF07719 TPR_2: Tetratricopept 96.8 0.0027 5.9E-08 47.6 5.1 32 610-641 3-34 (34)
308 KOG2610 Uncharacterized conser 96.8 0.2 4.4E-06 56.9 21.5 165 613-817 108-273 (491)
309 KOG0985 Vesicle coat protein c 96.8 0.35 7.5E-06 61.5 25.3 61 606-671 1102-1162(1666)
310 KOG4507 Uncharacterized conser 96.7 0.051 1.1E-06 65.2 17.4 97 848-948 616-713 (886)
311 COG2909 MalT ATP-dependent tra 96.7 0.42 9.2E-06 60.6 26.0 252 642-937 415-685 (894)
312 PF07719 TPR_2: Tetratricopept 96.6 0.0033 7.1E-08 47.2 4.7 31 879-909 3-33 (34)
313 KOG2610 Uncharacterized conser 96.6 0.13 2.9E-06 58.3 18.8 159 710-904 115-274 (491)
314 COG2976 Uncharacterized protei 96.6 0.041 8.8E-07 58.5 13.9 105 837-944 87-192 (207)
315 PF10345 Cohesin_load: Cohesin 96.5 1.4 3.1E-05 55.7 29.9 318 590-926 74-464 (608)
316 PF02259 FAT: FAT domain; Int 96.5 1.8 3.8E-05 50.2 28.5 137 729-890 143-305 (352)
317 PF10300 DUF3808: Protein of u 96.5 0.11 2.5E-06 63.4 19.2 124 711-906 246-376 (468)
318 PF13281 DUF4071: Domain of un 96.5 0.14 3E-06 60.2 19.0 93 706-822 149-257 (374)
319 KOG1914 mRNA cleavage and poly 96.5 3.4 7.3E-05 50.2 32.5 93 844-940 371-464 (656)
320 PF03704 BTAD: Bacterial trans 96.4 0.09 2E-06 53.3 15.2 114 644-761 8-125 (146)
321 PF08631 SPO22: Meiosis protei 96.4 0.73 1.6E-05 52.4 23.6 135 619-762 4-151 (278)
322 KOG1308 Hsp70-interacting prot 96.3 0.0036 7.8E-08 71.0 4.4 85 708-817 124-208 (377)
323 PF05843 Suf: Suppressor of fo 96.2 0.057 1.2E-06 61.5 13.6 131 796-944 6-140 (280)
324 KOG2041 WD40 repeat protein [G 96.2 1.1 2.4E-05 55.1 24.1 37 633-670 684-720 (1189)
325 KOG0431 Auxilin-like protein a 96.2 0.012 2.5E-07 71.0 8.1 61 985-1058 389-449 (453)
326 KOG1914 mRNA cleavage and poly 96.1 3.6 7.8E-05 50.0 27.7 61 609-670 21-81 (656)
327 KOG0568 Molecular chaperone (D 96.1 0.013 2.9E-07 62.3 7.0 55 983-1058 46-101 (342)
328 KOG0985 Vesicle coat protein c 96.1 0.53 1.1E-05 59.9 21.2 215 640-901 1102-1336(1666)
329 KOG1550 Extracellular protein 96.0 0.65 1.4E-05 58.1 22.5 235 605-909 285-541 (552)
330 COG2976 Uncharacterized protei 95.9 0.42 9.2E-06 51.0 17.0 117 716-869 70-189 (207)
331 PF13281 DUF4071: Domain of un 95.8 0.68 1.5E-05 54.6 20.2 127 607-747 140-274 (374)
332 KOG1464 COP9 signalosome, subu 95.7 0.68 1.5E-05 51.4 18.2 230 621-891 40-286 (440)
333 PF13181 TPR_8: Tetratricopept 95.7 0.022 4.8E-07 42.8 4.8 31 912-942 2-32 (34)
334 COG3118 Thioredoxin domain-con 95.7 0.7 1.5E-05 52.3 18.4 62 874-935 233-296 (304)
335 PF13181 TPR_8: Tetratricopept 95.6 0.018 4E-07 43.2 4.1 32 878-909 2-33 (34)
336 COG5159 RPN6 26S proteasome re 95.6 1.9 4.2E-05 48.3 21.0 284 613-938 8-312 (421)
337 PF05843 Suf: Suppressor of fo 95.6 0.22 4.7E-06 56.8 14.6 133 611-765 4-140 (280)
338 PF07079 DUF1347: Protein of u 95.5 7.7 0.00017 46.4 29.5 52 884-936 469-520 (549)
339 KOG3783 Uncharacterized conser 95.4 1.3 2.8E-05 53.7 20.5 106 614-739 237-344 (546)
340 PF04910 Tcf25: Transcriptiona 95.2 0.57 1.2E-05 55.4 16.7 177 723-946 31-228 (360)
341 PF07079 DUF1347: Protein of u 95.2 4.8 0.0001 48.0 23.5 200 652-902 308-520 (549)
342 PRK10941 hypothetical protein; 95.1 0.11 2.4E-06 58.7 10.2 71 877-947 181-251 (269)
343 PF12968 DUF3856: Domain of Un 95.0 0.9 2E-05 44.8 14.4 114 739-906 16-129 (144)
344 KOG2041 WD40 repeat protein [G 95.0 1.1 2.5E-05 55.0 18.3 48 616-668 713-760 (1189)
345 PF08631 SPO22: Meiosis protei 94.8 8.6 0.00019 43.8 24.7 55 609-663 36-105 (278)
346 PF13176 TPR_7: Tetratricopept 94.8 0.053 1.1E-06 41.9 4.5 31 913-943 1-31 (36)
347 PF15015 NYD-SP12_N: Spermatog 94.7 0.55 1.2E-05 54.9 14.4 102 839-940 176-291 (569)
348 COG0790 FOG: TPR repeat, SEL1 94.7 2.8 6E-05 47.6 20.5 182 710-942 53-268 (292)
349 KOG0723 Molecular chaperone (D 94.7 0.061 1.3E-06 51.3 5.5 53 985-1061 57-109 (112)
350 KOG0546 HSP90 co-chaperone CPR 94.6 0.049 1.1E-06 62.4 5.7 105 842-946 225-344 (372)
351 PF14853 Fis1_TPR_C: Fis1 C-te 94.6 0.12 2.5E-06 43.9 6.6 41 610-650 3-43 (53)
352 PF13174 TPR_6: Tetratricopept 94.6 0.046 1E-06 40.5 3.7 31 913-943 2-32 (33)
353 KOG0890 Protein kinase of the 94.5 3.8 8.3E-05 57.2 23.3 87 855-943 1645-1734(2382)
354 KOG0530 Protein farnesyltransf 94.4 8.3 0.00018 43.2 21.5 132 617-770 52-185 (318)
355 PF14853 Fis1_TPR_C: Fis1 C-te 94.3 0.16 3.5E-06 43.0 6.9 44 878-921 2-45 (53)
356 PF09986 DUF2225: Uncharacteri 94.3 0.22 4.8E-06 54.5 9.9 92 849-940 87-194 (214)
357 KOG1839 Uncharacterized protei 94.3 0.55 1.2E-05 61.8 14.8 189 735-947 935-1135(1236)
358 PF13174 TPR_6: Tetratricopept 94.3 0.07 1.5E-06 39.5 4.2 31 610-640 2-32 (33)
359 KOG1258 mRNA processing protei 94.2 20 0.00042 44.5 30.2 107 838-948 296-403 (577)
360 PF14561 TPR_20: Tetratricopep 94.2 0.52 1.1E-05 44.5 10.6 66 627-692 7-74 (90)
361 PF08424 NRDE-2: NRDE-2, neces 94.1 2 4.4E-05 49.9 17.9 52 714-765 47-98 (321)
362 PF04910 Tcf25: Transcriptiona 94.1 1.1 2.3E-05 53.1 15.6 163 633-817 31-219 (360)
363 PRK10941 hypothetical protein; 94.1 0.34 7.5E-06 54.8 10.9 68 611-678 184-251 (269)
364 KOG3824 Huntingtin interacting 94.0 0.12 2.6E-06 57.9 6.9 80 838-921 115-194 (472)
365 COG5107 RNA14 Pre-mRNA 3'-end 94.0 18 0.00039 43.3 28.2 187 721-941 291-496 (660)
366 KOG3824 Huntingtin interacting 93.9 0.48 1E-05 53.4 11.3 66 613-678 121-186 (472)
367 KOG0530 Protein farnesyltransf 93.9 3.8 8.3E-05 45.7 18.0 170 711-923 56-233 (318)
368 smart00028 TPR Tetratricopepti 93.6 0.11 2.3E-06 36.6 3.9 31 610-640 3-33 (34)
369 KOG1538 Uncharacterized conser 93.5 5 0.00011 49.4 19.5 79 845-938 753-831 (1081)
370 PF10602 RPN7: 26S proteasome 93.4 1.8 3.9E-05 46.0 14.5 100 839-939 36-141 (177)
371 PF13176 TPR_7: Tetratricopept 93.4 0.13 2.8E-06 39.7 4.2 26 611-636 2-27 (36)
372 PF08424 NRDE-2: NRDE-2, neces 93.3 3.4 7.3E-05 48.1 17.7 166 582-763 6-185 (321)
373 smart00028 TPR Tetratricopepti 93.1 0.14 3.1E-06 35.9 3.9 30 879-908 3-32 (34)
374 KOG3192 Mitochondrial J-type c 92.6 0.11 2.3E-06 53.0 3.4 73 983-1070 7-81 (168)
375 COG4976 Predicted methyltransf 92.6 0.15 3.3E-06 55.3 4.8 61 616-676 3-63 (287)
376 KOG4814 Uncharacterized conser 92.6 0.79 1.7E-05 56.1 11.1 102 842-943 357-460 (872)
377 PF04781 DUF627: Protein of un 92.5 1.1 2.3E-05 43.9 10.0 95 845-940 2-107 (111)
378 KOG4507 Uncharacterized conser 92.5 1.2 2.6E-05 54.1 12.3 130 792-937 213-343 (886)
379 COG0790 FOG: TPR repeat, SEL1 92.4 11 0.00023 42.8 20.1 136 609-763 74-222 (292)
380 PRK13184 pknD serine/threonine 92.2 52 0.0011 43.8 31.3 55 623-678 534-588 (932)
381 KOG3807 Predicted membrane pro 92.2 5.7 0.00012 45.5 16.5 103 712-819 198-303 (556)
382 KOG4151 Myosin assembly protei 92.2 0.33 7.1E-06 60.9 7.6 108 839-946 53-162 (748)
383 KOG1310 WD40 repeat protein [G 91.8 0.39 8.5E-06 57.4 7.2 78 597-674 395-477 (758)
384 KOG4814 Uncharacterized conser 91.7 27 0.00059 43.5 22.3 74 609-682 355-434 (872)
385 KOG1839 Uncharacterized protei 91.6 3.3 7.1E-05 55.0 15.9 173 711-906 945-1128(1236)
386 KOG1464 COP9 signalosome, subu 91.4 9 0.0002 42.9 16.6 125 795-925 149-286 (440)
387 KOG3364 Membrane protein invol 91.4 1.2 2.5E-05 45.1 9.1 80 840-921 33-115 (149)
388 PF09986 DUF2225: Uncharacteri 91.4 2.3 5.1E-05 46.6 12.4 108 805-919 91-208 (214)
389 KOG3807 Predicted membrane pro 91.3 33 0.00071 39.6 22.1 57 613-671 189-245 (556)
390 PRK13184 pknD serine/threonine 91.3 17 0.00036 48.2 21.9 130 615-767 482-626 (932)
391 COG4649 Uncharacterized protei 91.1 13 0.00028 39.4 16.5 117 794-924 97-213 (221)
392 PF04781 DUF627: Protein of un 90.8 2.7 5.9E-05 41.1 10.7 102 614-761 2-107 (111)
393 PF14561 TPR_20: Tetratricopep 90.7 1.3 2.9E-05 41.7 8.5 77 858-938 7-85 (90)
394 PRK15180 Vi polysaccharide bio 90.6 2.6 5.7E-05 50.1 12.3 122 710-870 301-422 (831)
395 COG4976 Predicted methyltransf 90.5 0.24 5.1E-06 53.9 3.5 59 848-910 4-62 (287)
396 PF00244 14-3-3: 14-3-3 protei 90.0 13 0.00028 41.4 17.0 31 644-674 3-33 (236)
397 COG1076 DjlA DnaJ-domain-conta 89.8 3.2 7E-05 44.0 11.5 61 984-1057 113-173 (174)
398 COG3629 DnrI DNA-binding trans 89.8 7.5 0.00016 44.3 14.9 85 854-944 136-220 (280)
399 KOG2063 Vacuolar assembly/sort 89.6 18 0.00039 47.2 19.7 123 611-743 507-637 (877)
400 PF12862 Apc5: Anaphase-promot 89.2 2.5 5.5E-05 39.9 9.2 60 848-907 7-71 (94)
401 COG4649 Uncharacterized protei 89.1 15 0.00032 38.9 15.0 131 612-760 62-195 (221)
402 PF04053 Coatomer_WDAD: Coatom 88.7 6.9 0.00015 47.6 14.7 154 711-937 274-428 (443)
403 KOG2422 Uncharacterized conser 88.7 14 0.0003 45.5 16.6 134 622-758 252-404 (665)
404 PF04190 DUF410: Protein of un 88.5 46 0.001 37.7 20.2 27 730-756 88-114 (260)
405 KOG2581 26S proteasome regulat 88.2 46 0.001 39.6 19.7 139 799-944 134-280 (493)
406 PRK11619 lytic murein transgly 88.0 92 0.002 40.0 26.1 47 621-671 112-158 (644)
407 PF13374 TPR_10: Tetratricopep 87.8 0.84 1.8E-05 35.4 4.2 29 913-941 4-32 (42)
408 KOG0890 Protein kinase of the 87.5 47 0.001 47.3 22.1 118 614-759 1389-1510(2382)
409 KOG2422 Uncharacterized conser 87.3 23 0.00049 43.7 17.2 185 745-945 251-453 (665)
410 COG5107 RNA14 Pre-mRNA 3'-end 87.0 39 0.00085 40.6 18.4 66 874-942 299-364 (660)
411 PF09613 HrpB1_HrpK: Bacterial 86.6 4.9 0.00011 41.9 10.0 86 839-928 10-95 (160)
412 PF13374 TPR_10: Tetratricopep 86.4 1.4 3E-05 34.1 4.7 30 877-906 2-31 (42)
413 COG5159 RPN6 26S proteasome re 86.4 22 0.00048 40.3 15.3 105 794-906 128-235 (421)
414 PF12862 Apc5: Anaphase-promot 86.3 2.7 5.9E-05 39.7 7.5 61 886-946 7-76 (94)
415 KOG1920 IkappaB kinase complex 85.8 1E+02 0.0022 41.4 22.8 51 843-904 1003-1053(1265)
416 smart00101 14_3_3 14-3-3 homol 85.5 68 0.0015 36.0 20.0 83 855-949 144-231 (244)
417 PF11207 DUF2989: Protein of u 85.5 11 0.00024 40.8 12.3 57 839-896 141-197 (203)
418 KOG1920 IkappaB kinase complex 85.4 1.2E+02 0.0025 40.9 23.0 24 881-904 1003-1026(1265)
419 COG2912 Uncharacterized conser 85.3 1.9 4.2E-05 48.4 6.8 70 878-947 182-251 (269)
420 KOG0128 RNA-binding protein SA 85.2 81 0.0018 40.7 21.0 144 614-773 196-353 (881)
421 PF04053 Coatomer_WDAD: Coatom 84.9 12 0.00025 45.7 13.7 102 618-758 271-373 (443)
422 KOG1538 Uncharacterized conser 84.9 44 0.00095 41.7 17.9 236 616-943 564-805 (1081)
423 PF10602 RPN7: 26S proteasome 84.7 6.2 0.00013 42.0 10.1 102 794-906 39-142 (177)
424 PF10516 SHNi-TPR: SHNi-TPR; 84.7 1.5 3.2E-05 34.7 3.9 33 912-944 2-34 (38)
425 PF09613 HrpB1_HrpK: Bacterial 83.5 29 0.00063 36.4 13.9 69 611-679 13-81 (160)
426 COG3914 Spy Predicted O-linked 83.3 19 0.0004 44.6 14.1 99 845-947 73-178 (620)
427 COG3629 DnrI DNA-binding trans 82.7 5.5 0.00012 45.4 9.0 62 609-670 154-215 (280)
428 KOG3364 Membrane protein invol 82.6 6.7 0.00014 39.8 8.5 72 609-680 33-109 (149)
429 PF12739 TRAPPC-Trs85: ER-Golg 82.6 13 0.00029 44.9 12.9 31 839-869 370-400 (414)
430 PF10373 EST1_DNA_bind: Est1 D 82.4 20 0.00043 40.1 13.6 62 627-688 1-62 (278)
431 KOG1463 26S proteasome regulat 82.3 1.1E+02 0.0024 35.9 19.2 105 794-906 131-238 (411)
432 KOG0128 RNA-binding protein SA 82.0 1.6E+02 0.0034 38.3 21.7 273 627-946 98-382 (881)
433 KOG0546 HSP90 co-chaperone CPR 81.8 2.2 4.8E-05 49.4 5.5 127 797-927 228-359 (372)
434 PF15015 NYD-SP12_N: Spermatog 81.2 3.8 8.3E-05 48.3 7.1 60 611-670 231-290 (569)
435 KOG1258 mRNA processing protei 81.2 1.6E+02 0.0034 37.0 29.6 119 797-932 303-421 (577)
436 PF10579 Rapsyn_N: Rapsyn N-te 81.0 9.5 0.00021 35.2 8.1 64 842-906 9-72 (80)
437 COG2912 Uncharacterized conser 80.4 7.2 0.00016 44.0 8.8 67 612-678 185-251 (269)
438 KOG2063 Vacuolar assembly/sort 80.3 52 0.0011 43.3 17.4 50 618-671 484-533 (877)
439 COG4455 ImpE Protein of avirul 79.9 37 0.00081 37.3 13.4 63 615-677 8-70 (273)
440 KOG2581 26S proteasome regulat 79.3 76 0.0016 37.9 16.6 108 794-910 172-280 (493)
441 KOG0889 Histone acetyltransfer 79.0 2.4E+02 0.0052 42.3 24.0 47 876-922 2811-2857(3550)
442 COG3914 Spy Predicted O-linked 79.0 34 0.00074 42.4 14.3 125 622-767 45-177 (620)
443 KOG2396 HAT (Half-A-TPR) repea 78.5 9 0.00019 46.4 9.2 59 853-915 119-178 (568)
444 COG1076 DjlA DnaJ-domain-conta 78.3 1.5 3.4E-05 46.4 2.7 55 999-1068 18-72 (174)
445 KOG2066 Vacuolar assembly/sort 77.9 1.3E+02 0.0028 38.7 19.1 32 728-759 501-532 (846)
446 PF12739 TRAPPC-Trs85: ER-Golg 77.8 73 0.0016 38.5 17.1 173 734-942 210-401 (414)
447 PF10579 Rapsyn_N: Rapsyn N-te 77.5 17 0.00036 33.6 8.6 58 706-763 14-74 (80)
448 COG3014 Uncharacterized protei 77.4 23 0.0005 41.0 11.5 82 736-817 62-151 (449)
449 KOG2114 Vacuolar assembly/sort 76.8 86 0.0019 40.5 17.2 113 615-756 341-455 (933)
450 COG1747 Uncharacterized N-term 76.7 1.1E+02 0.0023 37.7 17.2 157 608-766 99-293 (711)
451 PF11817 Foie-gras_1: Foie gra 76.1 1E+02 0.0022 34.6 16.5 64 840-903 179-244 (247)
452 PF10255 Paf67: RNA polymerase 75.6 1.8E+02 0.0039 35.1 19.0 106 794-909 125-231 (404)
453 COG3947 Response regulator con 74.2 12 0.00026 42.6 8.2 59 611-669 282-340 (361)
454 COG3947 Response regulator con 73.9 12 0.00025 42.6 8.0 65 879-943 281-345 (361)
455 TIGR02561 HrpB1_HrpK type III 73.9 19 0.00042 37.2 9.0 81 844-928 15-95 (153)
456 TIGR03362 VI_chp_7 type VI sec 73.3 1.3E+02 0.0028 35.0 16.6 143 620-763 111-281 (301)
457 PRK15180 Vi polysaccharide bio 72.5 20 0.00043 43.1 9.8 130 618-769 299-428 (831)
458 PF11207 DUF2989: Protein of u 72.2 16 0.00035 39.6 8.4 74 855-932 122-199 (203)
459 TIGR02561 HrpB1_HrpK type III 71.9 73 0.0016 33.1 12.6 65 612-676 14-78 (153)
460 PF06957 COPI_C: Coatomer (COP 71.9 42 0.0009 40.6 12.6 149 795-944 122-333 (422)
461 PF07721 TPR_4: Tetratricopept 71.5 4.9 0.00011 28.6 3.0 21 611-631 4-24 (26)
462 PF10516 SHNi-TPR: SHNi-TPR; 70.7 6.4 0.00014 31.2 3.7 29 878-906 2-30 (38)
463 PF10373 EST1_DNA_bind: Est1 D 69.5 11 0.00024 42.1 7.1 62 858-923 1-62 (278)
464 PF07721 TPR_4: Tetratricopept 69.4 5.2 0.00011 28.5 2.8 24 643-666 2-25 (26)
465 PF14863 Alkyl_sulf_dimr: Alky 69.2 23 0.00049 36.4 8.4 53 607-659 69-121 (141)
466 KOG0292 Vesicle coat complex C 69.1 3.7E+02 0.008 35.4 21.1 106 839-944 991-1117(1202)
467 COG4941 Predicted RNA polymera 68.4 50 0.0011 38.4 11.5 90 852-946 309-400 (415)
468 PF04190 DUF410: Protein of un 67.7 52 0.0011 37.3 11.8 107 803-937 2-116 (260)
469 PF04097 Nic96: Nup93/Nic96; 66.5 2.9E+02 0.0064 35.3 19.4 25 919-944 513-537 (613)
470 KOG0276 Vesicle coat complex C 66.2 41 0.0009 41.8 10.8 102 799-937 645-747 (794)
471 PF07720 TPR_3: Tetratricopept 65.6 16 0.00035 28.5 5.0 30 611-640 4-35 (36)
472 PF00244 14-3-3: 14-3-3 protei 64.8 2.1E+02 0.0046 31.9 15.7 54 893-946 142-204 (236)
473 PF10255 Paf67: RNA polymerase 64.4 21 0.00046 42.9 8.1 103 843-946 126-234 (404)
474 KOG2396 HAT (Half-A-TPR) repea 64.2 3.6E+02 0.0077 33.4 26.3 71 610-680 107-178 (568)
475 PF07720 TPR_3: Tetratricopept 63.2 17 0.00037 28.3 4.7 21 913-933 3-23 (36)
476 KOG0686 COP9 signalosome, subu 61.6 2.6E+02 0.0057 33.6 15.9 97 841-938 152-256 (466)
477 KOG1497 COP9 signalosome, subu 61.4 96 0.0021 36.0 12.0 110 732-867 103-212 (399)
478 PF09670 Cas_Cas02710: CRISPR- 61.4 1.2E+02 0.0025 36.5 13.7 128 795-941 135-271 (379)
479 KOG0529 Protein geranylgeranyl 58.4 4E+02 0.0088 32.1 16.9 130 622-769 89-232 (421)
480 COG1747 Uncharacterized N-term 57.3 4.7E+02 0.01 32.5 21.4 65 622-688 80-144 (711)
481 TIGR03362 VI_chp_7 type VI sec 57.3 3.7E+02 0.0079 31.3 17.5 165 710-906 111-279 (301)
482 KOG4279 Serine/threonine prote 56.9 2.5E+02 0.0053 36.2 15.1 56 710-765 255-320 (1226)
483 KOG2114 Vacuolar assembly/sort 56.6 37 0.0008 43.7 8.5 26 611-636 371-396 (933)
484 KOG0889 Histone acetyltransfer 56.5 8.7E+02 0.019 37.1 22.1 41 838-882 2811-2851(3550)
485 PF10952 DUF2753: Protein of u 56.3 57 0.0012 32.8 8.0 73 735-817 4-76 (140)
486 COG4455 ImpE Protein of avirul 55.5 1.1E+02 0.0025 33.8 10.8 56 711-766 14-69 (273)
487 PF14863 Alkyl_sulf_dimr: Alky 55.1 50 0.0011 34.0 7.9 48 698-748 73-120 (141)
488 PF05053 Menin: Menin; InterP 55.0 1.4E+02 0.0031 37.2 12.7 75 708-817 270-344 (618)
489 COG5191 Uncharacterized conser 53.8 15 0.00032 42.2 4.1 76 837-916 105-181 (435)
490 KOG2034 Vacuolar sorting prote 52.8 6.8E+02 0.015 33.1 23.8 51 616-670 366-417 (911)
491 COG5191 Uncharacterized conser 52.7 31 0.00066 39.7 6.3 68 615-682 114-182 (435)
492 PF09670 Cas_Cas02710: CRISPR- 52.2 2.9E+02 0.0063 33.1 15.0 60 612-671 135-198 (379)
493 TIGR03504 FimV_Cterm FimV C-te 52.0 20 0.00044 29.3 3.6 26 914-939 2-27 (44)
494 PF08626 TRAPPC9-Trs120: Trans 51.9 84 0.0018 43.4 11.7 87 712-817 359-471 (1185)
495 PHA02537 M terminase endonucle 50.3 25 0.00054 39.1 5.2 95 848-944 92-211 (230)
496 KOG0276 Vesicle coat complex C 50.1 49 0.0011 41.2 7.8 67 717-817 626-692 (794)
497 KOG2072 Translation initiation 50.0 7.3E+02 0.016 32.6 24.8 59 998-1058 386-449 (988)
498 TIGR02710 CRISPR-associated pr 48.8 1.9E+02 0.0041 34.7 12.4 115 613-727 135-275 (380)
499 PF11817 Foie-gras_1: Foie gra 48.5 94 0.002 34.8 9.6 63 874-936 175-243 (247)
500 TIGR03504 FimV_Cterm FimV C-te 47.4 28 0.00061 28.5 3.8 22 648-669 5-26 (44)
No 1
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=100.00 E-value=7.4e-46 Score=401.26 Aligned_cols=419 Identities=24% Similarity=0.317 Sum_probs=360.1
Q ss_pred hhHHHHHHHHHhchH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 594 LASAETIAAQEACEK--WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 594 ~A~a~~~aAIe~~e~--~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
+|...+.+||+..|. .++|.||.+|+.+|+-..|+.++.++|++.|++..|..++|.+++.+|++++|...|..+|+.
T Consensus 56 DALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 56 DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc
Confidence 456678888887776 447889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHH
Q 039706 672 GSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEV 751 (1166)
Q Consensus 672 ~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeA 751 (1166)
+|.+... .++...+.. +.+.+.....+......|++..||+++..+|++.|+++.++..+|.||...|+...|
T Consensus 136 ~~s~~~~----~eaqskl~~---~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~A 208 (504)
T KOG0624|consen 136 EPSNGLV----LEAQSKLAL---IQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKA 208 (504)
T ss_pred CCCcchh----HHHHHHHHh---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHH
Confidence 9975332 233333333 334445555555556789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhh
Q 039706 752 IQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIP 831 (1166)
Q Consensus 752 i~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~ 831 (1166)
|..++.+-++..++.+. .+.++.+++..|+.+.++..++.++..+++. +.|.+
T Consensus 209 I~Dlk~askLs~DnTe~-------------------------~ykis~L~Y~vgd~~~sL~~iRECLKldpdH--K~Cf~ 261 (504)
T KOG0624|consen 209 IHDLKQASKLSQDNTEG-------------------------HYKISQLLYTVGDAENSLKEIRECLKLDPDH--KLCFP 261 (504)
T ss_pred HHHHHHHHhccccchHH-------------------------HHHHHHHHHhhhhHHHHHHHHHHHHccCcch--hhHHH
Confidence 99999999887766543 3568899999999999999999999988773 56778
Q ss_pred hccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 832 LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 832 L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
.+...+.+...+.-+......++|.++++.+++.++.+|+..+.....+..+..|+..-+++.+||..|.++|.++|+++
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH
Confidence 88888888888888888999999999999999999988665555666667788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhhHHhhhhccCccchhhhcc
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILG 991 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~~e~~~rk~~~~dyY~iLG 991 (1166)
.++..+|.+|+...+|+.|+.+|++|+++++.+.. +...+.+|++..++... .|||+|||
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~-------------~reGle~Akrlkkqs~k-------RDYYKILG 401 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR-------------AREGLERAKRLKKQSGK-------RDYYKILG 401 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH-------------HHHHHHHHHHHHHHhcc-------chHHHHhh
Confidence 99999999999999999999999999999877744 34557777776665442 59999999
Q ss_pred cCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhcccchhhh
Q 039706 992 VESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEE 1071 (1166)
Q Consensus 992 l~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~~YD~~~~ 1071 (1166)
|.++++..||.+||||+|.+||||... .+++++.|+++|..|..|-+||+||+||+.+|.+++
T Consensus 402 VkRnAsKqEI~KAYRKlAqkWHPDNFq-----------------dEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD 464 (504)
T KOG0624|consen 402 VKRNASKQEITKAYRKLAQKWHPDNFQ-----------------DEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED 464 (504)
T ss_pred hcccccHHHHHHHHHHHHHhcCCcccc-----------------CHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence 999999999999999999999999975 356789999999999999999999999999999998
Q ss_pred hhhhhccCCCCC
Q 039706 1072 TRNTQKKQNGSN 1083 (1166)
Q Consensus 1072 ~~~~~~~~~g~~ 1083 (1166)
+..+...++|+|
T Consensus 465 PLD~Es~q~GGG 476 (504)
T KOG0624|consen 465 PLDPESQQGGGG 476 (504)
T ss_pred CCChhhccCCCC
Confidence 876665544443
No 2
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-40 Score=363.49 Aligned_cols=378 Identities=30% Similarity=0.427 Sum_probs=322.9
Q ss_pred hhCcchhHHHHHHHHHhchH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 039706 589 KQEPNLASAETIAAQEACEK--WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFR 666 (1166)
Q Consensus 589 k~ep~~A~a~~~aAIe~~e~--~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fe 666 (1166)
++.+.++...+..||++|+. .+|.|||.+|+.+++|++|+-++++.++++|.+.+++.+.+.|+..+++..+|...|+
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence 44566777888899999987 4589999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC---CChHHHHHHHHHHHH
Q 039706 667 MCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS---SYSEKLLEMKAEALF 743 (1166)
Q Consensus 667 kALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~---P~~~~al~~lA~~y~ 743 (1166)
.. .| .....|+..+++.+... |....+..+.+.|+.
T Consensus 142 ~~---~~--------------------------------------~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~ 180 (486)
T KOG0550|consen 142 SK---QA--------------------------------------YKAANALPTLEKLAPSHSREPACFKAKLLKAECLA 180 (486)
T ss_pred hh---hh--------------------------------------hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhh
Confidence 11 00 01112333333333222 666788899999999
Q ss_pred HccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Q 039706 744 MLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGG 823 (1166)
Q Consensus 744 ~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~ 823 (1166)
.++++++|+...-..+++++.+..+ +++.|.++++.++.+.|+.+|++++..+|.
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~a-------------------------l~vrg~~~yy~~~~~ka~~hf~qal~ldpd 235 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEA-------------------------LYVRGLCLYYNDNADKAINHFQQALRLDPD 235 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHH-------------------------HHhcccccccccchHHHHHHHhhhhccChh
Confidence 9999999999999999998877654 456788999999999999999999888776
Q ss_pred chhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 039706 824 KMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLA 903 (1166)
Q Consensus 824 k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekA 903 (1166)
. .........+..+..+...|+.+++.|+|..|.++|++||.++|.+...++.+|+|+|.+...+|+..+|+.+|+.|
T Consensus 236 h--~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 236 H--QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred h--hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 4 33445566778888999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhhHHhhhhccCc
Q 039706 904 IALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIP 983 (1166)
Q Consensus 904 LeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~~e~~~rk~~~ 983 (1166)
+.++|.++++|+.+|.||+.+++|++|+++|++|+++... -++.+.|++|+..|++.+ +
T Consensus 314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--------------~e~r~~l~~A~~aLkkSk---R---- 372 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--------------CEIRRTLREAQLALKKSK---R---- 372 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------------cchHHHHHHHHHHHHHhh---h----
Confidence 9999999999999999999999999999999999987433 134566888888887554 2
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++||+.++++..+|+++||++||.||||++..+ +++||.+|+++++||.+|+||.+|
T Consensus 373 kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-------------------q~eaE~kFkevgeAy~il~d~~kr 433 (486)
T KOG0550|consen 373 KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-------------------QKEAEAKFKEVGEAYTILSDPMKR 433 (486)
T ss_pred hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-------------------hHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4999999999999999999999999999999998632 689999999999999999999999
Q ss_pred cccchhhhhhh
Q 039706 1064 SRYDLEEETRN 1074 (1166)
Q Consensus 1064 ~~YD~~~~~~~ 1074 (1166)
.+||.+.+.+.
T Consensus 434 ~r~dsg~dle~ 444 (486)
T KOG0550|consen 434 VRFDSGQDLEE 444 (486)
T ss_pred hhcccccchhh
Confidence 99999887655
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=3.6e-30 Score=295.24 Aligned_cols=298 Identities=16% Similarity=0.167 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+|.|+|.++...|+++.|+..|+.+|+++|++.++|.++|.+|...|+.+.|.++|..+|+++|+..-.+..+..+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999986655555555555
Q ss_pred HhhhHHhHHHHHHHHHHHHH------------hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQ------------NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLC 755 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~------------~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~l 755 (1166)
..+++.++..++.++..... ...+|+...||.+|++|++++|...++|+++|.+|-.++.|++|+.+|
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 55555555555555433221 224899999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccc
Q 039706 756 EQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGT 835 (1166)
Q Consensus 756 ekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~ 835 (1166)
.+++.+.|+...++ .++|.+|+.+|.++-|+..|++++...|
T Consensus 276 ~rAl~lrpn~A~a~-------------------------gNla~iYyeqG~ldlAI~~Ykral~~~P------------- 317 (966)
T KOG4626|consen 276 LRALNLRPNHAVAH-------------------------GNLACIYYEQGLLDLAIDTYKRALELQP------------- 317 (966)
T ss_pred HHHHhcCCcchhhc-------------------------cceEEEEeccccHHHHHHHHHHHHhcCC-------------
Confidence 99999999887663 3345555555555555555555533222
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
....++.++|+++-..|+..+|+.+|.+||.+. |..+.+.+|+|.+|..+|.+++|...|.+|++..|..+.++.
T Consensus 318 -~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~----p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n 392 (966)
T KOG4626|consen 318 -NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC----PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN 392 (966)
T ss_pred -CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence 223344444555555555555555555555544 444555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 916 RRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 916 ~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+||.+|..+|++++|+.+|++||.+.|.-.+..
T Consensus 393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 555555555555555555555555555444443
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-29 Score=290.26 Aligned_cols=328 Identities=16% Similarity=0.132 Sum_probs=260.3
Q ss_pred chhHHHhhhHHhhCcchhHHHHHHHH-------------------Hhch--HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 578 RNSEVDRGQEIKQEPNLASAETIAAQ-------------------EACE--KWRLSNRAATRMALGRMRDALSDCMLAVA 636 (1166)
Q Consensus 578 ~~a~~~~~~aik~ep~~A~a~~~aAI-------------------e~~e--~~ay~nrA~ayl~lG~y~eAI~~fekALe 636 (1166)
..++..+..++.+.|++..++...|+ .+.| ..+...+|..+-.+|+..+|..+|.+||+
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 45566666666666666555443222 2222 23345566666666666666666666666
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH---------
Q 039706 637 IDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQ--------- 707 (1166)
Q Consensus 637 ldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~--------- 707 (1166)
.+|.++-+|..||-++..+|+...|+++|++|++++|....++..+..++..+....++..++.++.....
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl 292 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL 292 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce
Confidence 66666666666666666666666666666666666666666665566655555555555555544432211
Q ss_pred ---hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchh
Q 039706 708 ---NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSEST 784 (1166)
Q Consensus 708 ---~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~ 784 (1166)
++.+|..+-||..|+++|++.|..++++.++|.++-..|+..+|..+|.++|.+.|+.+++
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada---------------- 356 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA---------------- 356 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH----------------
Confidence 4568999999999999999999999999999999999999999999999999999987654
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHH
Q 039706 785 KHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTA 864 (1166)
Q Consensus 785 ~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~k 864 (1166)
..+||.+|..+|.+++|...|.++ +...+..+.++.++|.+|.++|++++|+.+|++
T Consensus 357 ---------m~NLgni~~E~~~~e~A~~ly~~a--------------l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 357 ---------MNNLGNIYREQGKIEEATRLYLKA--------------LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred ---------HHHHHHHHHHhccchHHHHHHHHH--------------HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 467999999999999999999998 444555678889999999999999999999999
Q ss_pred HHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 865 ALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 865 ALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
||.+. |..+.+|.|+|.+|..+|+...|+.+|.+||.++|.+++|+.+||.+|...|+..+|+..|+.||++.|+-
T Consensus 414 alrI~----P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 414 ALRIK----PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHhcC----chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhh
Q 039706 945 IEKS 948 (1166)
Q Consensus 945 ~e~~ 948 (1166)
.++.
T Consensus 490 pdA~ 493 (966)
T KOG4626|consen 490 PDAY 493 (966)
T ss_pred chhh
Confidence 7754
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=2.5e-24 Score=268.19 Aligned_cols=314 Identities=18% Similarity=0.131 Sum_probs=251.3
Q ss_pred CCCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039706 575 KGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA 654 (1166)
Q Consensus 575 ~~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~ 654 (1166)
..++.|+..+.++|...|+ +..|+|+|.+|+.+|+|++|+.+|.+||+++|++.++|+++|.+|..
T Consensus 141 ~~~~~Ai~~y~~al~~~p~--------------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKPD--------------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred CCHHHHHHHHHHHHhcCCc--------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3456666666666666664 13578999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCchhHHHHHHHH-HHH--hhhHHh--------------HHHH-------------------
Q 039706 655 LGEIEDASKYFRMCLQSGSDVCVDQKIAVEA-SDG--LQKAQK--------------VSEC------------------- 698 (1166)
Q Consensus 655 lGd~eeAl~~fekALel~P~n~~a~~~l~Ea-~~~--L~k~~~--------------~~e~------------------- 698 (1166)
+|++++|+..|..++.+++........+.+. ... ...... +..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999999988877655432111111000 000 000000 0000
Q ss_pred --------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 699 --------MQRSAQLLQNKTSNDAEIALGVIDEALFIS---SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 699 --------~~~a~~~l~~~~~gd~eeALe~lekALel~---P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
.............++|++|+..|++++... |....++..+|.+++.+|++++|+..|++++.++|.+..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 000001111123468999999999999864 777889999999999999999999999999999886532
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
.+..+|.++..+|++++|+..|++++...+ .....+..+|.
T Consensus 367 -------------------------~~~~la~~~~~~g~~~eA~~~~~~al~~~p--------------~~~~~~~~lg~ 407 (615)
T TIGR00990 367 -------------------------SYIKRASMNLELGDPDKAEEDFDKALKLNS--------------EDPDIYYHRAQ 407 (615)
T ss_pred -------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------CCHHHHHHHHH
Confidence 256789999999999999999999855433 34566778899
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
+++..|++++|+.+|++++.++ |.+..+|.++|.++..+|++++|+..|++++.+.|+++.++..+|.+|..+|++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~----P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLD----PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC----ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence 9999999999999999999998 888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhH
Q 039706 928 DHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~ 945 (1166)
++|+..|++++++.|+..
T Consensus 484 ~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETK 501 (615)
T ss_pred HHHHHHHHHHHhcCCccc
Confidence 999999999999988753
No 6
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-26 Score=261.74 Aligned_cols=152 Identities=28% Similarity=0.392 Sum_probs=118.4
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.+|||+||||||++||||+++. .++|+++|++|+|||+|||||+||
T Consensus 4 ~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g--------------------~~~AeeKFKEI~eAYEVLsD~eKR 63 (371)
T COG0484 4 RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG--------------------DKEAEEKFKEINEAYEVLSDPEKR 63 (371)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------------------CHHHHHHHHHHHHHHHHhCCHHHH
Confidence 599999999999999999999999999999999973 168999999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC------CCCCCCCceEEeeeeeeecccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD------NSAARGDIYSISFNLRIASNKRCY 1137 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~------~~~~rG~~~~~~~~lsf~ea~~G~ 1137 (1166)
+.||+++..... .+|++++++. .|+. .....|.++|++.. ...++|.++.+.+.|+|+||++|+
T Consensus 64 a~YD~fG~~~~~---~gg~gg~g~~------~fgg-~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~ 133 (371)
T COG0484 64 AAYDQFGHAGFK---AGGFGGFGFG------GFGG-DFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGV 133 (371)
T ss_pred HHhhccCccccc---cCCcCCCCcC------CCCC-CHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCc
Confidence 999999875432 1111111110 1111 12244666664221 234479999999999999999999
Q ss_pred cceeeceeeeee-eecceeeeeecccccc
Q 039706 1138 RPFVTIREFMAC-ACQWRYQIVESQTEDC 1165 (1166)
Q Consensus 1138 ~K~i~~~~~~~C-~C~G~~q~~~~~~~~c 1165 (1166)
++.|.+.+..+| +|+|+|-.--..+++|
T Consensus 134 ~~~i~~~~~~~C~~C~GsGak~gt~~~tC 162 (371)
T COG0484 134 KKEIRVTRSVTCSTCHGSGAKPGTDPKTC 162 (371)
T ss_pred eeeEecceeeECCcCCCCCCCCCCCCCcC
Confidence 999999999999 9998876666666666
No 7
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.7e-23 Score=238.16 Aligned_cols=336 Identities=23% Similarity=0.242 Sum_probs=258.9
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
+++.++.-|.++|.++|.+. ..|.||..+|..+|+|.+|+.+..+.++++|.++++|.++|.+++-+
T Consensus 17 d~~~ai~~~t~ai~l~p~nh-------------vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 17 DFETAIRLFTEAIMLSPTNH-------------VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred cHHHHHHHHHHHHccCCCcc-------------chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 34555555555555555533 23677999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhH-------------------------------------------
Q 039706 656 GEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKA------------------------------------------- 692 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~------------------------------------------- 692 (1166)
|+|++|+..|.+.|+.+|++......+.++.......
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999999999999999866555554443111000
Q ss_pred -----HhHHH--------------------------------------------------HHHHHHHHHHhhcCCCHHHH
Q 039706 693 -----QKVSE--------------------------------------------------CMQRSAQLLQNKTSNDAEIA 717 (1166)
Q Consensus 693 -----~~~~e--------------------------------------------------~~~~a~~~l~~~~~gd~eeA 717 (1166)
..+.. ........-..+...++..|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 00000 00000000112336778899
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHH
Q 039706 718 LGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLI 797 (1166)
Q Consensus 718 Le~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lL 797 (1166)
+++|..+++++ .+...+.++|.+|+.++.+.+++..+..+++.....- .+...+. -.+..+
T Consensus 244 ~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-----------ad~klIa-------k~~~r~ 304 (539)
T KOG0548|consen 244 IQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-----------ADYKLIA-------KALARL 304 (539)
T ss_pred HHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-----------HHHHHHH-------HHHHHh
Confidence 99999999999 8889999999999999999999999999887644211 1111111 112447
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCch-------hhhhhh-----hccchHHHHHHhhhhHHHHHcCChHHHHHHHHHH
Q 039706 798 FKSYFTLGRLEEAIAALERHESGNGGKM-------LESLIP-----LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAA 865 (1166)
Q Consensus 798 A~ay~~lGd~eeAl~~lekAl~~~~~k~-------le~a~~-----L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kA 865 (1166)
|.+|...++++.|+.+|++++....... .+.... ....+..+...+..|+.+|+.|+|..|+.+|++|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8899999999999999999765322211 111111 1223344566677899999999999999999999
Q ss_pred HhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 866 LSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 866 Lel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
|..+ |.++.+|+|+|.||.+++.+..|+.+|+++++++|++..+|++.|.++..+.+|+.|+..|+++++++|++.
T Consensus 385 Ikr~----P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 385 IKRD----PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HhcC----CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 9988 999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred Hh
Q 039706 946 EK 947 (1166)
Q Consensus 946 e~ 947 (1166)
+.
T Consensus 461 e~ 462 (539)
T KOG0548|consen 461 EA 462 (539)
T ss_pred HH
Confidence 64
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=3e-22 Score=250.51 Aligned_cols=313 Identities=13% Similarity=0.024 Sum_probs=258.4
Q ss_pred CcchhHHHHHHHHH--hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 591 EPNLASAETIAAQE--ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668 (1166)
Q Consensus 591 ep~~A~a~~~aAIe--~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekA 668 (1166)
++..+.+.+..++. +....+++.+|.+++..|++++|+..|++++.++|++..++..+|.++..+|++++|+..|+++
T Consensus 57 ~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444 4445778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH-----------HHHHhhcCCCHHHHHHHHHHHHHhCC-ChHHHHH
Q 039706 669 LQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA-----------QLLQNKTSNDAEIALGVIDEALFISS-YSEKLLE 736 (1166)
Q Consensus 669 Lel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~-----------~~l~~~~~gd~eeALe~lekALel~P-~~~~al~ 736 (1166)
++++|++...+..+..++...++...+...+..+. ........|++++|+..+++++...| .....+.
T Consensus 137 l~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~ 216 (656)
T PRK15174 137 WLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAG 216 (656)
T ss_pred HHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHH
Confidence 99999988777777666666555554443332221 01123457999999999999998876 3344556
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHH----HHH
Q 039706 737 MKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEE----AIA 812 (1166)
Q Consensus 737 ~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~ee----Al~ 812 (1166)
.++.++..+|++++|+..|++++.+.|++... +..+|.+|...|++++ |+.
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~-------------------------~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAAL-------------------------RRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH-------------------------HHHHHHHHHHcCCchhhHHHHHH
Confidence 67889999999999999999999988764321 4568999999999986 799
Q ss_pred HHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc
Q 039706 813 ALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH 892 (1166)
Q Consensus 813 ~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq 892 (1166)
.|++++...| .....+..+|.++...|++++|+.+|++++.++ |.++.++.++|.+|..+|+
T Consensus 272 ~~~~Al~l~P--------------~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~----P~~~~a~~~La~~l~~~G~ 333 (656)
T PRK15174 272 HWRHALQFNS--------------DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH----PDLPYVRAMYARALRQVGQ 333 (656)
T ss_pred HHHHHHhhCC--------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCC
Confidence 9998754443 345667778999999999999999999999988 8888999999999999999
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 893 ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 893 ~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+++|+..|++++..+|++..++..+|.++..+|++++|+..|++++++.|+...
T Consensus 334 ~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 334 YTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 999999999999999999888888899999999999999999999999998764
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=2e-22 Score=251.04 Aligned_cols=264 Identities=16% Similarity=0.147 Sum_probs=208.2
Q ss_pred CChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHH
Q 039706 622 GRMRDALSDCMLAVAI---DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSEC 698 (1166)
Q Consensus 622 G~y~eAI~~fekALel---dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~ 698 (1166)
++|++|+..|++++.+ .|....+|..+|.++..+|++++|+.+|++++.++|.+...+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~------------------ 369 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI------------------ 369 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH------------------
Confidence 4566666667776665 3566667777777777777777777777777777776432111
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 699 MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 699 ~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
..+.+ +...|++++|+..|+++++++|.++.+++.+|.+++.+|++++|+.+|++++.+.|++..
T Consensus 370 --~la~~--~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~----------- 434 (615)
T TIGR00990 370 --KRASM--NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF----------- 434 (615)
T ss_pred --HHHHH--HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH-----------
Confidence 11111 234799999999999999999999999999999999999999999999999999886532
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
.+..+|.+++.+|++++|+..|++++...+ .....+..+|.++...|++++|
T Consensus 435 --------------~~~~la~~~~~~g~~~eA~~~~~~al~~~P--------------~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 435 --------------SHIQLGVTQYKEGSIASSMATFRRCKKNFP--------------EAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred --------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------CChHHHHHHHHHHHHccCHHHH
Confidence 245789999999999999999999854333 3355677789999999999999
Q ss_pred HHHHHHHHhccccCCch--hHHHHHHHHHHH-HHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 859 VEHYTAALSCTVESHPF--AAICFCNRAAAY-KALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~--~a~a~~nlA~ay-~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
+..|++|+.+.+...+. ....+.+.+.++ ...|++++|+..|++++.++|++..++..+|.+|..+|++++|+.+|+
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998543222 222334444444 447999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHH
Q 039706 936 RLIALLTKQIE 946 (1166)
Q Consensus 936 kALeL~P~~~e 946 (1166)
+++++.+...+
T Consensus 567 ~A~~l~~~~~e 577 (615)
T TIGR00990 567 RAAELARTEGE 577 (615)
T ss_pred HHHHHhccHHH
Confidence 99998766433
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=9e-22 Score=260.91 Aligned_cols=306 Identities=15% Similarity=0.057 Sum_probs=210.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
|.+..+|.+++..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+.+|+++++++|++...+..+..++..
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 44566789999999999999999999999999999999999999999999999999999999999987666555444321
Q ss_pred hhhHHhHHHHHHH---------------------HHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC
Q 039706 689 LQKAQKVSECMQR---------------------SAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRK 747 (1166)
Q Consensus 689 L~k~~~~~e~~~~---------------------a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGd 747 (1166)
. ...++..++.. ......+...|++++|+..|+++++++|+++.+++.+|.+|..+|+
T Consensus 432 ~-~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 Q-SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred c-CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 1 11111111110 0011113358999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhh
Q 039706 748 YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLE 827 (1166)
Q Consensus 748 yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le 827 (1166)
+++|+..+++++...|.++..+ +.++..+...+++++|+.+++++........+.
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~-------------------------~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~ 565 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQV-------------------------YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ 565 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHH-------------------------HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence 9999999999999988775542 223333444455555555544422111100000
Q ss_pred hh-hh-------------------------hccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHH
Q 039706 828 SL-IP-------------------------LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFC 881 (1166)
Q Consensus 828 ~a-~~-------------------------L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~ 881 (1166)
.. .. +...+.....+..+|.++...|++++|+.+|+++++++ |.+..+++
T Consensus 566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~----P~~~~a~~ 641 (1157)
T PRK11447 566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE----PGNADARL 641 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHH
Confidence 00 00 00011122334456667777777777777777777666 66666777
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 882 NRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 882 nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
++|.+|..+|++++|++.|+++++..|+++.++..+|.++..+|++++|+..|++++...|+.
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 777777777777777777777777777777777777777777777777777777776665443
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=1.1e-20 Score=240.59 Aligned_cols=343 Identities=15% Similarity=0.134 Sum_probs=264.6
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHH-------------------HH--hchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAA-------------------QE--ACEKWRLSNRAATRMALGRMRDALSDCMLA 634 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aA-------------------Ie--~~e~~ay~nrA~ayl~lG~y~eAI~~fekA 634 (1166)
.+..++..+..++..+|+........+ +. +..+..++.+|.+|...|++++|+..|+++
T Consensus 412 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 412 DPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred ChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 345566667777776665443322211 11 123456888999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH-----------
Q 039706 635 VAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA----------- 703 (1166)
Q Consensus 635 LeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~----------- 703 (1166)
++++|.+..+++.+|.++...|++++|+..|++++...|.+...+..+..++...++...+...+..+.
T Consensus 492 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 571 (899)
T TIGR02917 492 LSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571 (899)
T ss_pred HhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHH
Confidence 999999999999999999999999999999999999999887766666666655555544444433321
Q ss_pred -HHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 704 -QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 704 -~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
....+...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|.+...
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------------- 637 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALA-------------- 637 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH--------------
Confidence 11113458999999999999999999999999999999999999999999999999888765432
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh---------------hhhhhh-----ccchHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML---------------ESLIPL-----AGTVRELLCR 842 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l---------------e~a~~L-----~~~~~~a~~l 842 (1166)
+..++.+|...|++++|+..|++++...+.... ..+..+ ...+.....+
T Consensus 638 -----------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 706 (899)
T TIGR02917 638 -----------LLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF 706 (899)
T ss_pred -----------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH
Confidence 345677777777777777777776654443110 000000 1112234456
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
..+|.++...|++++|+..|++++... |.. ..+.+++.++..+|++++|+..+++++..+|++..+++.+|.+|.
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRA----PSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC----CCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 667999999999999999999999887 433 677889999999999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 923 MIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 923 ~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
.+|++++|+..|+++++..|++....
T Consensus 782 ~~g~~~~A~~~~~~~~~~~p~~~~~~ 807 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKAPDNAVVL 807 (899)
T ss_pred HCcCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999998876544
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2.5e-21 Score=242.22 Aligned_cols=359 Identities=11% Similarity=0.000 Sum_probs=257.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
...+..++..|++.+|+..++.++...|.+..+++.+|.+++..|++++|+..|++++.++|++...+..+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la-------- 117 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVA-------- 117 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHH--------
Confidence 345778899999999999999999999999999999999999999999999999999999999754332221
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
.. +...|++++|+..|++++.+.|.++.++..++.++..+|++++|+..+++++...|.....
T Consensus 118 ------------~~--l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a--- 180 (656)
T PRK15174 118 ------------SV--LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM--- 180 (656)
T ss_pred ------------HH--HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH---
Confidence 11 2347999999999999999999999999999999999999999999999998888865322
Q ss_pred cCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH
Q 039706 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ 851 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~ 851 (1166)
+..+ ..++..|++++|+..+++++...+.. ....+..++.++..
T Consensus 181 ----------------------~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~-------------~~~~~~~l~~~l~~ 224 (656)
T PRK15174 181 ----------------------IATC-LSFLNKSRLPEDHDLARALLPFFALE-------------RQESAGLAVDTLCA 224 (656)
T ss_pred ----------------------HHHH-HHHHHcCCHHHHHHHHHHHHhcCCCc-------------chhHHHHHHHHHHH
Confidence 1112 24677888888888888865433211 01112334677788
Q ss_pred cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH----HHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD----AIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 852 ~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee----Ai~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
.|++++|+..|++++.+. |.++.+++++|.+|..+|++++ |+..|+++++++|+++.++..+|.++..+|++
T Consensus 225 ~g~~~eA~~~~~~al~~~----p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 225 VGKYQEAIQTGESALARG----LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred CCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 888888888888888877 7778888888888888888885 78888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhhHHhhhhccCccchhhhcc--cCCCCCHHHHHHHH
Q 039706 928 DHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILG--VESSVSVADIKRGY 1005 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~~e~~~rk~~~~dyY~iLG--l~~~as~~eIkkaY 1005 (1166)
++|+..|++++++.|++.......+..- .-.+....|...+..+-.... . ...++..++ +......++-.. +
T Consensus 301 ~eA~~~l~~al~l~P~~~~a~~~La~~l---~~~G~~~eA~~~l~~al~~~P-~-~~~~~~~~a~al~~~G~~deA~~-~ 374 (656)
T PRK15174 301 EKAIPLLQQSLATHPDLPYVRAMYARAL---RQVGQYTAASDEFVQLAREKG-V-TSKWNRYAAAALLQAGKTSEAES-V 374 (656)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHhCc-c-chHHHHHHHHHHHHCCCHHHHHH-H
Confidence 8888888888888888766543222110 001122233333322221111 1 111111111 222333444444 4
Q ss_pred HHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 1006 RKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 1006 rklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+.+++.+|+..+. .-++.-..+.++++.+..+.+|
T Consensus 375 l~~al~~~P~~~~~----------------------~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 375 FEHYIQARASHLPQ----------------------SFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred HHHHHHhChhhchh----------------------hHHHHHHHHHHHHHhcCCccch
Confidence 45566668998642 2234556788888888888766
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=3.1e-21 Score=255.86 Aligned_cols=312 Identities=13% Similarity=0.047 Sum_probs=233.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
..+|.+++..|++++|+..|+++++++|++..++..+|.+|..+|++++|+.+|+++++++|++..... +..+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~-~~~l------ 345 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK-WESL------ 345 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH-HHHH------
Confidence 456999999999999999999999999999999999999999999999999999999999998543111 0000
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
.....++............|++++|+..|++++.++|.+..++..+|.+|..+|++++|+..|+++++++|.+..++..
T Consensus 346 -l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~ 424 (1157)
T PRK11447 346 -LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRG 424 (1157)
T ss_pred -HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0001111112222223458999999999999999999999999999999999999999999999999999988765443
Q ss_pred cCcccccCccchhh-----------------hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 772 NGQSMELDSSESTK-----------------HVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~-----------------~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
++.++......... ........+..+|.++...|++++|+..|++++...|.
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~----------- 493 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG----------- 493 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------
Confidence 33322111000000 00011223456788899999999999999998554443
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHH-----------
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLA----------- 903 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekA----------- 903 (1166)
..+.+..+|.+|...|++++|+..|++++.+. |.++..++.++..+...+++++|+..++++
T Consensus 494 ---~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~----P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~ 566 (1157)
T PRK11447 494 ---SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK----PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQE 566 (1157)
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHH
Confidence 35567778999999999999999999999877 666666666666665666666655554431
Q ss_pred -----------------------------HHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhc
Q 039706 904 -----------------------------IALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSN 949 (1166)
Q Consensus 904 -----------------------------LeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~ 949 (1166)
++..|.++.+++.+|.+|..+|++++|+..|++++++.|++.+...
T Consensus 567 l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~ 641 (1157)
T PRK11447 567 LAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARL 641 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2346777788888888888888888888888888888888776553
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=6.4e-21 Score=242.87 Aligned_cols=297 Identities=18% Similarity=0.117 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+++.+|..++..|+|++|+..+++++.++|.++.+++.+|.+|..+|++++|+..|++++...|........+..++.
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYL 101 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHH
Confidence 35578899999999999999999999999999999999999999999999999999999999999987655555555555
Q ss_pred HhhhHHhHHHHHHHH-------------HHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 688 GLQKAQKVSECMQRS-------------AQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a-------------~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
..++...+...+... .....+...|++++|+..|++++..+|.+..++..+|.+++..|++++|+..
T Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 181 (899)
T TIGR02917 102 LQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL 181 (899)
T ss_pred HCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHH
Confidence 444444433332211 1112234589999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
+++++...|.+... +..+|.+++..|++++|+..|++++...+.
T Consensus 182 ~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~----------- 225 (899)
T TIGR02917 182 IDEVLTADPGNVDA-------------------------LLLKGDLLLSLGNIELALAAYRKAIALRPN----------- 225 (899)
T ss_pred HHHHHHhCCCChHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----------
Confidence 99999987754321 456889999999999999999998554333
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
....+..++.++...|++++|...+++++... |....+++.+|.++...|++++|+..|++++..+|++..++
T Consensus 226 ---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 298 (899)
T TIGR02917 226 ---NPAVLLALATILIEAGEFEEAEKHADALLKKA----PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPAL 298 (899)
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHH
Confidence 34456677889999999999999999999877 66677888899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
+.+|.++..+|++++|+..|+++++..|.+...
T Consensus 299 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 331 (899)
T TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA 331 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 999999999999999999999999998876543
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=2.8e-19 Score=227.88 Aligned_cols=313 Identities=11% Similarity=-0.061 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.++..+|.++...|++++|+..++++++.+|++.. ++.+|.++...|++++|+..|++++++.|++...+..+..++..
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44556888888899999999999999999999888 88899999999999999999999999988876554433332211
Q ss_pred hhhHH----------------------------------------------hHHHHHHHHHH------------------
Q 039706 689 LQKAQ----------------------------------------------KVSECMQRSAQ------------------ 704 (1166)
Q Consensus 689 L~k~~----------------------------------------------~~~e~~~~a~~------------------ 704 (1166)
..... .+...+..+..
T Consensus 163 ~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 163 NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 11000 00000000000
Q ss_pred -HHHhhcCCCHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 705 -LLQNKTSNDAEIALGVIDEALFISSYS-EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 705 -~l~~~~~gd~eeALe~lekALel~P~~-~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
+......+++++|+..|+++++..|.. ..+...+|.+|+.+|++++|+..|++++...|.+...
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~-------------- 308 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADL-------------- 308 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC--------------
Confidence 001124577888888888887775432 2234446788888888888888888887765543110
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh-hhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML-ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEH 861 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l-e~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~ 861 (1166)
.......++.++...|++++|+..++++....+.... .......+.......+..+|.++...|++++|++.
T Consensus 309 -------~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 309 -------SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred -------ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0011234666788999999999999987665443210 00001112223345666789999999999999999
Q ss_pred HHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 862 YTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 862 y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
|++++... |.+..++..+|.++...|++++|++.+++++.++|++..+++.+|.+++.++++++|...++++++..
T Consensus 382 l~~al~~~----P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 382 ARELAYNA----PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHhC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999988 88899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHh
Q 039706 942 TKQIEK 947 (1166)
Q Consensus 942 P~~~e~ 947 (1166)
|++...
T Consensus 458 Pd~~~~ 463 (765)
T PRK10049 458 PQDPGV 463 (765)
T ss_pred CCCHHH
Confidence 998753
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.5e-19 Score=205.34 Aligned_cols=312 Identities=17% Similarity=0.183 Sum_probs=244.7
Q ss_pred hCcchhHHHHHHHHHhchH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039706 590 QEPNLASAETIAAQEACEK--WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRM 667 (1166)
Q Consensus 590 ~ep~~A~a~~~aAIe~~e~--~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fek 667 (1166)
.+++.|+.++..||++||. ..|.||+.||..+|+|++-++++.+||+++|++.++++++|.++..+|++++|+....-
T Consensus 129 kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv 208 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV 208 (606)
T ss_pred ccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH
Confidence 3456678899999999986 56899999999999999999999999999999999999999999999999999988764
Q ss_pred HHHcCC-Cc----hhHHHHHHH-----HHHHhhh-HH-----------------------------hHHHHHHHHHHHHH
Q 039706 668 CLQSGS-DV----CVDQKIAVE-----ASDGLQK-AQ-----------------------------KVSECMQRSAQLLQ 707 (1166)
Q Consensus 668 ALel~P-~n----~~a~~~l~E-----a~~~L~k-~~-----------------------------~~~e~~~~a~~~l~ 707 (1166)
.--++- ++ +...+.|-. +...+.. -. +.......+...+.
T Consensus 209 ~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~ 288 (606)
T KOG0547|consen 209 LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALE 288 (606)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHH
Confidence 322211 11 111111100 1111110 00 00011112222222
Q ss_pred hhcCCCHHHHHHHHHHHHHhC----CCh---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCc
Q 039706 708 NKTSNDAEIALGVIDEALFIS----SYS---------EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQ 774 (1166)
Q Consensus 708 ~~~~gd~eeALe~lekALel~----P~~---------~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~ 774 (1166)
......|..|...+.+..... ..+ +.++.++|..++..|++-.|...+..++.++|.+...
T Consensus 289 ~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l------ 362 (606)
T KOG0547|consen 289 KGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL------ 362 (606)
T ss_pred hhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH------
Confidence 222346777777776654332 112 5778889999999999999999999999998865431
Q ss_pred ccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCC
Q 039706 775 SMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGR 854 (1166)
Q Consensus 775 ~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~ 854 (1166)
|..++.+|....+.++....|.+|...++. ....|+.+|.+++-+++
T Consensus 363 -------------------yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--------------n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 363 -------------------YIKRAAAYADENQSEKMWKDFNKAEDLDPE--------------NPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred -------------------HHHHHHHHhhhhccHHHHHHHHHHHhcCCC--------------CCchhHhHHHHHHHHHH
Confidence 456899999999999999999998665544 35667778999999999
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHH
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDF 934 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~y 934 (1166)
|++|+..|++++.++ |.++..|..++.+.++++++++++..|+.++...|+.++.|...|.++..+++|++|++.|
T Consensus 410 ~e~A~aDF~Kai~L~----pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 410 YEEAIADFQKAISLD----PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 039706 935 HRLIALLTKQ 944 (1166)
Q Consensus 935 ekALeL~P~~ 944 (1166)
.+|++|.|..
T Consensus 486 D~ai~LE~~~ 495 (606)
T KOG0547|consen 486 DKAIELEPRE 495 (606)
T ss_pred HHHHhhcccc
Confidence 9999998883
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=3.5e-19 Score=208.75 Aligned_cols=280 Identities=14% Similarity=0.071 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
..|.+|..++..|++++|+..|+++++.+|++..++..+|.+|...|++++|+..+++++...+.... .
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~---------- 105 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE-Q---------- 105 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH-H----------
Confidence 35668999999999999999999999999999999999999999999999999999998874322110 0
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
. ...+..+... +...|++++|+..|+++++..|....++..++.++...|++++|+..+++++...|.....
T Consensus 106 ----~-~~~~~~La~~--~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 177 (389)
T PRK11788 106 ----R-LLALQELGQD--YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV- 177 (389)
T ss_pred ----H-HHHHHHHHHH--HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-
Confidence 0 0111222222 2357999999999999999999999999999999999999999999999999877643210
Q ss_pred cccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 770 DANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 770 ~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
.....+..+|.++...|++++|+.+|++++...+. ....+..+|..+
T Consensus 178 -------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------------~~~~~~~la~~~ 224 (389)
T PRK11788 178 -------------------EIAHFYCELAQQALARGDLDAARALLKKALAADPQ--------------CVRASILLGDLA 224 (389)
T ss_pred -------------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC--------------CHHHHHHHHHHH
Confidence 01112456889999999999999999997543322 244566789999
Q ss_pred HHcCChHHHHHHHHHHHhccccCCchh-HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHH
Q 039706 850 FQAGRHSEAVEHYTAALSCTVESHPFA-AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYD 928 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e~~p~~-a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdye 928 (1166)
...|++++|++.|++++..+ |.. ..++..++.+|..+|++++|+..++++++..|+... +..++.++...|+++
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~ 299 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQD----PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPE 299 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHC----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHH
Confidence 99999999999999999876 443 567888999999999999999999999999998754 488999999999999
Q ss_pred HHHHHHHHHHHHhhhhHH
Q 039706 929 HAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 929 eAi~~yekALeL~P~~~e 946 (1166)
+|+..|+++++..|+...
T Consensus 300 ~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 300 AAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHHHHHHHHHHhCcCHHH
Confidence 999999999999887654
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.3e-19 Score=213.50 Aligned_cols=268 Identities=14% Similarity=0.116 Sum_probs=227.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~ 694 (1166)
+.....+-+..+|+..|.+.-...++-..++.++|++|+.+++|++|..+|+.+-++.|--.....++..++-.|++.-
T Consensus 326 ~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v- 404 (638)
T KOG1126|consen 326 GYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV- 404 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH-
Confidence 3334445677999999999666777888999999999999999999999999999999874443333333332332211
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHH-HHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccC
Q 039706 695 VSECMQRSAQLLQNKTSNDAEIALGV-IDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANG 773 (1166)
Q Consensus 695 ~~e~~~~a~~~l~~~~~gd~eeALe~-lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g 773 (1166)
++.+ .+.++..+|..|+.|..+|.||-.+++++.||.++++|++++|....+
T Consensus 405 ----------------------~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYa----- 457 (638)
T KOG1126|consen 405 ----------------------ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYA----- 457 (638)
T ss_pred ----------------------HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchh-----
Confidence 1222 234677899999999999999999999999999999999999976543
Q ss_pred cccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC
Q 039706 774 QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG 853 (1166)
Q Consensus 774 ~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G 853 (1166)
|.++|.-+....++|.|..+|+.| +...++...+|+.+|.+|.+++
T Consensus 458 --------------------yTLlGhE~~~~ee~d~a~~~fr~A--------------l~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 458 --------------------YTLLGHESIATEEFDKAMKSFRKA--------------LGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred --------------------hhhcCChhhhhHHHHhHHHHHHhh--------------hcCCchhhHHHHhhhhheeccc
Confidence 567888889999999999999998 4455667788999999999999
Q ss_pred ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
+++.|.-+|++|++++ |.+..+.+.+|.++.++|+.++|+..|++|+.++|.++-..+.+|.++..+++|++|+..
T Consensus 504 k~e~Ae~~fqkA~~IN----P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEIN----PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred hhhHHHHHHHhhhcCC----ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHhh
Q 039706 934 FHRLIALLTKQIEKS 948 (1166)
Q Consensus 934 yekALeL~P~~~e~~ 948 (1166)
+++..++.|++....
T Consensus 580 LEeLk~~vP~es~v~ 594 (638)
T KOG1126|consen 580 LEELKELVPQESSVF 594 (638)
T ss_pred HHHHHHhCcchHHHH
Confidence 999999999886543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=1.3e-18 Score=221.89 Aligned_cols=307 Identities=10% Similarity=-0.010 Sum_probs=208.1
Q ss_pred HhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 604 EACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 604 e~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
++.+..++.++|.++...|++.+|+..|+++++++|.+..++..+|.++...|++++|+..++++++..|++.. +..+
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l- 122 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL- 122 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH-
Confidence 34445557889999999999999999999999999999999999999999999999999999999999998643 2111
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAE 763 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p 763 (1166)
..+ +...|++++|+..|++++++.|.++.++..++.++...+..++|+..+++++. .|
T Consensus 123 -------------------a~~--l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 123 -------------------AYV--YKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP 180 (765)
T ss_pred -------------------HHH--HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence 111 22479999999999999999999999999999999999999999988886554 32
Q ss_pred CCCCCc----------cc--------------------cCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 039706 764 KNSPPL----------DA--------------------NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAA 813 (1166)
Q Consensus 764 ~n~~a~----------~~--------------------~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~ 813 (1166)
...... .. +..++...+...........++...++ +++..|++++|+..
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHH
Confidence 210000 00 000000000000000001111111133 34677999999999
Q ss_pred HHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhch
Q 039706 814 LERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHI 893 (1166)
Q Consensus 814 lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ 893 (1166)
|++++...+. .+..+..+ +|.+|+..|++++|+.+|++++..++.........+..++.++...|++
T Consensus 260 ~~~ll~~~~~-----------~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 260 YQRLKAEGQI-----------IPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhccCCC-----------CCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 9997543211 01122222 3667777777777777777777655221111134555666677777777
Q ss_pred hHHHHHHHHHHHhCCC---------------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 894 TDAIADCNLAIALDGN---------------YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 894 eeAi~~lekALeldP~---------------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
++|+..+++++...|. ...++..+|.++...|++++|+..|++++...|.+.+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~ 396 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR 396 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 7777777777777652 245666777777777777777777777777777775544
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=4.9e-18 Score=205.89 Aligned_cols=360 Identities=16% Similarity=0.066 Sum_probs=227.1
Q ss_pred ccccccccCCCCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHH
Q 039706 566 RGDLFSSRLKGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF-LRV 644 (1166)
Q Consensus 566 r~~~~~~l~~~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~-~~A 644 (1166)
+.-++..+.+.++.|..++.-.+++.|++..+-+. +|.+.+..++|..|+.+|++||.++|.. +..
T Consensus 135 ~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlG-------------kA~i~ynkkdY~~al~yyk~al~inp~~~aD~ 201 (1018)
T KOG2002|consen 135 RGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLG-------------KARIAYNKKDYRGALKYYKKALRINPACKADV 201 (1018)
T ss_pred hhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHH-------------HHHHHhccccHHHHHHHHHHHHhcCcccCCCc
Confidence 33445556666788888999999999998877776 5666666666666666666666666654 345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHH-------------------
Q 039706 645 QVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL------------------- 705 (1166)
Q Consensus 645 ~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~------------------- 705 (1166)
.+.+|.|+..+|+.+.|+..|+++++++|.+..+.-.|..+.......+.....+..+..+
T Consensus 202 rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy 281 (1018)
T KOG2002|consen 202 RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY 281 (1018)
T ss_pred cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh
Confidence 5666666666666666666666666666654433333333222222111111111111100
Q ss_pred ---------------------------------HHhhcCCCHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHccCHHHH
Q 039706 706 ---------------------------------LQNKTSNDAEIALGVIDEALFISSYS-EKLLEMKAEALFMLRKYEEV 751 (1166)
Q Consensus 706 ---------------------------------l~~~~~gd~eeALe~lekALel~P~~-~~al~~lA~~y~~lGdyeeA 751 (1166)
-.+..+|+|++|..+|.+++..++++ .-.++.+|..|+..|+++.|
T Consensus 282 fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 282 FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHH
Confidence 01223667777777777777666666 55566667777777777777
Q ss_pred HHHHHHHHHhccCCCCCccccCcccccCccc-----hh-----hhh---hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039706 752 IQLCEQTFHFAEKNSPPLDANGQSMELDSSE-----ST-----KHV---SFRLWRCCLIFKSYFTLGRLEEAIAALERHE 818 (1166)
Q Consensus 752 i~~lekALel~p~n~~a~~~~g~~l~ld~~~-----~~-----~~~---~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl 818 (1166)
+.+|+++++..|++.....++|.++...... .. +.. ......|..++.+|. .++.-.++.+|..|+
T Consensus 362 ~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 362 KFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE-QTDPWASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH-hcChHHHHHHHHHHH
Confidence 7777777777666665554444433222100 00 000 000112223333332 233333355555542
Q ss_pred cCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc-----ccC-CchhHHHHHHHHHHHHHhhc
Q 039706 819 SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT-----VES-HPFAAICFCNRAAAYKALRH 892 (1166)
Q Consensus 819 ~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~-----~e~-~p~~a~a~~nlA~ay~~lGq 892 (1166)
. .+... ...--++.+.++|..++..|.+.+|..+|..|+... .+. ........||+|.++.++++
T Consensus 441 d--------~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 441 D--------ILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred H--------HHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhh
Confidence 1 00001 111235677889999999999999999999999862 111 12345678999999999999
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 893 ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 893 ~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
++.|.+.|..++..+|.++++|+++|.+....+...+|...+..++.++..+++++
T Consensus 512 ~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 512 TEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNAR 567 (1018)
T ss_pred hhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence 99999999999999999999999999888888999999999999999998888876
No 21
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=7.2e-21 Score=221.71 Aligned_cols=149 Identities=24% Similarity=0.307 Sum_probs=104.1
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++. ..|+++|++|++||+||+||.||
T Consensus 4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~---------------------~~a~~~F~~i~~AyevLsD~~KR 62 (372)
T PRK14296 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS---------------------PDAHDKMVEINEAADVLLDKDKR 62 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------chHHHHHHHHHHHHHHhcCHHHh
Confidence 499999999999999999999999999999999752 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCC-cc---CCchhhhhhhhhcccC---CCCCCCCceEEeeeeeeeccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYP-FE---RSSSRRQWREVRRSYD---NSAARGDIYSISFNLRIASNKRC 1136 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~-f~---~~~~~~~~~~~~~~~~---~~~~rG~~~~~~~~lsf~ea~~G 1136 (1166)
+.||.++.... ..+.+.+ ++..++...|. ++ .+.....|..+|++.. ...++|.++.+.+.|+|+|+++|
T Consensus 63 ~~YD~~G~~~~--~~~~~~~-~~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G 139 (372)
T PRK14296 63 KQYDQFGHAAF--DGSSGFS-SNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFG 139 (372)
T ss_pred hhhhhccchhh--cCCCCcC-cCCCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCC
Confidence 99999775311 1101100 00000000000 00 0001122344444211 12246889999999999999999
Q ss_pred ccceeeceeeeee-eecceee
Q 039706 1137 YRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1137 ~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
+++.|++.+.+.| +|+|+|.
T Consensus 140 ~~~~i~~~~~~~C~~C~G~G~ 160 (372)
T PRK14296 140 VDKIIELDLLTNCSKCFGSGA 160 (372)
T ss_pred eeEEEEEeeeeccCCCCCCcc
Confidence 9999999888777 7776654
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=2e-18 Score=221.70 Aligned_cols=270 Identities=10% Similarity=-0.020 Sum_probs=228.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
...+|+++|.+++. +++.+|+..+.+++...|+.. .++.+|.++...|++++|+..|++++...|....
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a--------- 544 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNED--------- 544 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHH---------
Confidence 56778899999987 899999999999999999764 4677788888999999999999998776555211
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCC
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~ 766 (1166)
.+..+.. ....|++++|+.+|++++...|....++..++..+..+|++++|+..|+++++++|+ .
T Consensus 545 -----------~~~la~a---ll~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~ 609 (987)
T PRK09782 545 -----------LLAAANT---AQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-A 609 (987)
T ss_pred -----------HHHHHHH---HHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-H
Confidence 1111111 224799999999999999999988888887777788889999999999999999884 2
Q ss_pred CCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhh
Q 039706 767 PPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAG 846 (1166)
Q Consensus 767 ~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG 846 (1166)
.. +..+|.++..+|++++|+..|++++...|. ....+.++|
T Consensus 610 ~a-------------------------~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd--------------~~~a~~nLG 650 (987)
T PRK09782 610 NA-------------------------YVARATIYRQRHNVPAAVSDLRAALELEPN--------------NSNYQAALG 650 (987)
T ss_pred HH-------------------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------CHHHHHHHH
Confidence 21 456889999999999999999998554443 456778889
Q ss_pred HHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 847 NEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 847 ~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
.++...|++++|+.+|++|++++ |.++.+++++|.++..+|++++|+.+|++|++++|+.+.+....|.+.....+
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~----P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGL----PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN 726 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence 99999999999999999999988 88899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 039706 927 YDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 927 yeeAi~~yekALeL~P~~~ 945 (1166)
++.|.+.|.++..+.|...
T Consensus 727 ~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 727 FRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHhhcCccch
Confidence 9999999999999888765
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=4.9e-19 Score=208.70 Aligned_cols=274 Identities=14% Similarity=0.118 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
.|.+.++|.+|+.+++|++|..+|+.+-+++|-..+..-....++..+.+--+--..-+..+..+|+.+..|..+
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~----- 427 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCAL----- 427 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHh-----
Confidence 388999999999999999999999999999998888777777888877766555555566777788776655433
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
+.++. -+++++.||.+|++|++++|....+|.++|.-+.....++.|..+|+.||..+|.+-.
T Consensus 428 ---------------GNcfS--LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 428 ---------------GNCFS--LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred ---------------cchhh--hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 22222 2689999999999999999999999999999999999999999999999999887533
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
+ |+-+|.+|.++++++.|.-+|++|+..+|.. ...+..+|.
T Consensus 491 A-------------------------wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--------------svi~~~~g~ 531 (638)
T KOG1126|consen 491 A-------------------------WYGLGTVYLKQEKLEFAEFHFQKAVEINPSN--------------SVILCHIGR 531 (638)
T ss_pred H-------------------------HHhhhhheeccchhhHHHHHHHhhhcCCccc--------------hhHHhhhhH
Confidence 2 5679999999999999999999986655543 334445699
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
.+.+.|+.++|+..|++|+.++ |.++.+.+.+|.++..+++|++|+..+++.-++-|+..-+++.+|.+|..+|+.
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld----~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLD----PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcC----CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHH
Q 039706 928 DHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e 946 (1166)
+.|+..|--|+.++|+..+
T Consensus 608 ~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 608 DLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHhhHHHhcCCCccch
Confidence 9999999999999998755
No 24
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.3e-20 Score=219.54 Aligned_cols=143 Identities=29% Similarity=0.436 Sum_probs=102.9
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.+|||+|||++|++||||+++.. ..|+++|++|++||+||+||.||
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~--------------------~~a~~~f~~i~~AYevLsd~~kR 62 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD--------------------KEAEEKFKLINEAYGVLSDEKKR 62 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------------------cHHHHHHHHHHHHHHHhccHHHH
Confidence 4999999999999999999999999999999998521 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----CCCCCCCceEEeeeeeeeccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----NSAARGDIYSISFNLRIASNKRCYR 1138 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----~~~~rG~~~~~~~~lsf~ea~~G~~ 1138 (1166)
+.||.++.... . .++.+.++ + .++ |+ .....|..+|++.. ...++|.++.+.+.|+|+|+++|++
T Consensus 63 ~~YD~~G~~~~--~-~~~~~~~~---~-~~~-f~--~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~ 132 (369)
T PRK14288 63 ALYDRYGKKGL--N-QAGASQSD---F-SDF-FE--DLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCK 132 (369)
T ss_pred HHHHHhccccc--c-cCCCCccc---c-ccc-hh--hHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeE
Confidence 99999775311 0 00100000 0 000 11 00011222232100 1124688999999999999999999
Q ss_pred ceeeceeeeee-eecceee
Q 039706 1139 PFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1139 K~i~~~~~~~C-~C~G~~q 1156 (1166)
+.|++.+.+.| +|+|+|.
T Consensus 133 ~~i~~~r~~~C~~C~G~G~ 151 (369)
T PRK14288 133 KTIKVQYQSVCESCDGTGA 151 (369)
T ss_pred EEEEEEeeccCCCCCCccc
Confidence 99999988888 7777663
No 25
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=2.7e-20 Score=217.02 Aligned_cols=149 Identities=25% Similarity=0.369 Sum_probs=106.4
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++. ...|+++|++|++||+||+||.+|
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--------------------~~~a~~~f~~i~~Ay~vL~d~~kR 63 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG--------------------NKESEEKFKEATEAYEILRDPKKR 63 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------------------chHHHHHHHHHHHHHHHhccHHHH
Confidence 499999999999999999999999999999999752 146889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC---------CCCCCCCceEEeeeeeeeccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD---------NSAARGDIYSISFNLRIASNK 1134 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~---------~~~~rG~~~~~~~~lsf~ea~ 1134 (1166)
+.||.++...... +.++.+.++...+. . .|+ .....|..+|++.. ...++|.++.+.+.|+|+|++
T Consensus 64 ~~YD~~G~~g~~~-~~~~~~~~~~~~~~-~-~~~--~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~ 138 (372)
T PRK14286 64 QAYDQFGKAGVNA-GAGGFGQGAYTDFS-D-IFG--DFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAA 138 (372)
T ss_pred HHHHHhCchhhcc-ccCCCCCCCccccc-c-ccc--chhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHh
Confidence 9999977531100 00010000000000 0 011 11123444554211 112468899999999999999
Q ss_pred ccccceeeceeeeee-eecceeee
Q 039706 1135 RCYRPFVTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1135 ~G~~K~i~~~~~~~C-~C~G~~q~ 1157 (1166)
+|+++.|++.+.+.| +|+|+|..
T Consensus 139 ~G~~k~i~~~r~~~C~~C~G~G~~ 162 (372)
T PRK14286 139 LGREYKIEIPRLESCVDCNGSGAS 162 (372)
T ss_pred CCeeEEEEeeccccCCCCcCCCcC
Confidence 999999999998888 88877653
No 26
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.4e-20 Score=216.44 Aligned_cols=153 Identities=25% Similarity=0.410 Sum_probs=106.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++.. ..|+++|++|++||+||+||.+|
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~kr 64 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD--------------------KEAEQKFKEINEAYEILSDPQKR 64 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--------------------hHHHHHHHHHHHHHHHhCCHHHH
Confidence 4999999999999999999999999999999997521 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCC-CCCCCccCCchhhhhhhhhccc-C-------CCCCCCCceEEeeeeeeeccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAY-AQNYPFERSSSRRQWREVRRSY-D-------NSAARGDIYSISFNLRIASNK 1134 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~-~-------~~~~rG~~~~~~~~lsf~ea~ 1134 (1166)
+.||.++...... ...+.++.+..++ ...+.|..++....|.++|+.+ + ...++|.++.+.+.|+|+|++
T Consensus 65 ~~yD~~G~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~ 143 (386)
T PRK14277 65 AQYDQFGHAAFDP-GGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAA 143 (386)
T ss_pred HHHHhhccccccc-cccccCCcCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHh
Confidence 9999977532110 0000100000000 0001111111112244444432 1 112368899999999999999
Q ss_pred ccccceeeceeeeee-eecceeee
Q 039706 1135 RCYRPFVTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1135 ~G~~K~i~~~~~~~C-~C~G~~q~ 1157 (1166)
.|+++.|++.+.+.| +|+|+|..
T Consensus 144 ~G~~~~v~~~r~~~C~~C~G~G~~ 167 (386)
T PRK14277 144 FGTEKEIEVERFEKCDVCKGSGAK 167 (386)
T ss_pred CCeEEEEEEEeeccCCCCCCCCcC
Confidence 999999999988888 88876653
No 27
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=6e-20 Score=213.68 Aligned_cols=150 Identities=28% Similarity=0.391 Sum_probs=107.2
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++.. ..|+++|++|++||+||+||.+|
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~kr 62 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN--------------------KEAESIFKEATEAYEVLIDDNKR 62 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--------------------HHHHHHHHHHHHHHHHHcCcchh
Confidence 4899999999999999999999999999999997521 36888999999999999999999
Q ss_pred cccchhhhhhhhhccCCCC-CCCCCCCCCCCCCccCCchhhhhhhhhccc-C----CCCCCCCceEEeeeeeeecccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGS-NTSRTHAYAQNYPFERSSSRRQWREVRRSY-D----NSAARGDIYSISFNLRIASNKRCY 1137 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~----~~~~rG~~~~~~~~lsf~ea~~G~ 1137 (1166)
+.||.++.... ..+++. +..+.. +.....|+ .....|..+|++. + ...++|.++.+.+.|+|+|+++|+
T Consensus 63 ~~yd~~g~~~~--~~~~~~~~~~~g~-~~~~~~~~--~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~ 137 (365)
T PRK14285 63 AQYDRFGHTAF--EGGGGFEGFSGGF-SGFSDIFE--DFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGY 137 (365)
T ss_pred HHHHhcCcchh--ccCCCccccCCCc-cccccccc--cHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCe
Confidence 99999775321 111110 000000 00000011 1112345555431 1 112468899999999999999999
Q ss_pred cceeeceeeeee-eecceeeee
Q 039706 1138 RPFVTIREFMAC-ACQWRYQIV 1158 (1166)
Q Consensus 1138 ~K~i~~~~~~~C-~C~G~~q~~ 1158 (1166)
++.|++.+.+.| +|+|+|...
T Consensus 138 ~~~i~~~r~~~C~~C~G~G~~~ 159 (365)
T PRK14285 138 KNNINITRNMLCESCLGKKSEK 159 (365)
T ss_pred EEEEEeeecccCCCCCCcccCC
Confidence 999999998888 888777543
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=7e-18 Score=216.74 Aligned_cols=263 Identities=13% Similarity=-0.047 Sum_probs=217.2
Q ss_pred cCChHH---HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 621 LGRMRD---ALSDCMLAVAIDPD--FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 621 lG~y~e---AI~~fekALeldP~--~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
.|+..+ +...+.+++..+|. +..+|+.+|.|+.. +++++|+..|.+++...|+...
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~------------------ 511 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ------------------ 511 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH------------------
Confidence 455544 45555666666777 99999999999998 8999999999999999987321
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcc
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQS 775 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~ 775 (1166)
.....+.....|++++|+..|++++...|.. ..+..+|.++...|++++|+.+|++++.+.|.....
T Consensus 512 -----~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l------- 578 (987)
T PRK09782 512 -----HRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNAL------- 578 (987)
T ss_pred -----HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHH-------
Confidence 1111222235899999999999988876664 457788999999999999999999999987654211
Q ss_pred cccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCCh
Q 039706 776 MELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855 (1166)
Q Consensus 776 l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~y 855 (1166)
+..++..+...|++++|+..|++++...|. ...+..+|.++.+.|++
T Consensus 579 ------------------~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~---------------~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 579 ------------------YWWLHAQRYIPGQPELALNDLTRSLNIAPS---------------ANAYVARATIYRQRHNV 625 (987)
T ss_pred ------------------HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------------HHHHHHHHHHHHHCCCH
Confidence 223455566779999999999998543332 45677889999999999
Q ss_pred HHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 856 SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 856 eEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
++|+.+|++++.++ |.++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+
T Consensus 626 deA~~~l~~AL~l~----Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 626 PAAVSDLRAALELE----PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHhhccCC
Q 039706 936 RLIALLTKQIEKSNQSG 952 (1166)
Q Consensus 936 kALeL~P~~~e~~~~~~ 952 (1166)
+++++.|+......+.+
T Consensus 702 ~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 702 LVIDDIDNQALITPLTP 718 (987)
T ss_pred HHHhcCCCCchhhhhhh
Confidence 99999998876554333
No 29
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5e-20 Score=216.03 Aligned_cols=162 Identities=25% Similarity=0.315 Sum_probs=108.3
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++.. +.|+++|++|++||+||+||+||
T Consensus 9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vLsD~~KR 68 (392)
T PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD--------------------PAAEERFKAVSEAHDVLSDPAKR 68 (392)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------hHHHHHHHHHHHHHHHhcchhhh
Confidence 4999999999999999999999999999999998521 46889999999999999999999
Q ss_pred cccchhhhhhh--hhccCC--C-CCCCCCCC----CCCCC--CccC-----Cchh-hhhhhhhcccC-----CCCCCCCc
Q 039706 1064 SRYDLEEETRN--TQKKQN--G-SNTSRTHA----YAQNY--PFER-----SSSR-RQWREVRRSYD-----NSAARGDI 1121 (1166)
Q Consensus 1064 ~~YD~~~~~~~--~~~~~~--g-~~~~~~~~----~~~~~--~f~~-----~~~~-~~~~~~~~~~~-----~~~~rG~~ 1121 (1166)
++||.+++... ...... + .+.++... ...++ .|+. .+.+ ..|..+|++.. ...++|.+
T Consensus 69 ~~YD~~G~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~d 148 (392)
T PRK14279 69 KEYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGND 148 (392)
T ss_pred hHHHHhhhhccccccccccccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCC
Confidence 99999864211 000000 0 00000000 00010 0110 0000 11222332111 11246889
Q ss_pred eEEeeeeeeecccccccceeeceeeeee-eecceeeeeecccccc
Q 039706 1122 YSISFNLRIASNKRCYRPFVTIREFMAC-ACQWRYQIVESQTEDC 1165 (1166)
Q Consensus 1122 ~~~~~~lsf~ea~~G~~K~i~~~~~~~C-~C~G~~q~~~~~~~~c 1165 (1166)
+.+.+.|+|+|+++|+++.|++.+.+.| +|+|+|...-..+..|
T Consensus 149 i~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C 193 (392)
T PRK14279 149 LETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVC 193 (392)
T ss_pred eEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCC
Confidence 9999999999999999999999988888 8887776544444444
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=3.3e-17 Score=191.99 Aligned_cols=285 Identities=13% Similarity=-0.022 Sum_probs=220.2
Q ss_pred CchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 039706 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF----LRVQVRAANCH 652 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~----~~A~~~LA~ly 652 (1166)
++.|+..+.+++..+|++. .+++.+|.+|...|++++|+..+++++...+.. ..++..+|.+|
T Consensus 51 ~~~A~~~~~~al~~~p~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETV-------------ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred hHHHHHHHHHHHhcCcccH-------------HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4555555555555555433 345668999999999999999999998854322 36789999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChH
Q 039706 653 LALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE 732 (1166)
Q Consensus 653 l~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~ 732 (1166)
...|++++|+..|+++++..|.+...+. ..... ....|++++|+..+++++...|...
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~--------------------~la~~--~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQ--------------------QLLEI--YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHH--------------------HHHHH--HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999988776322111 11111 2247999999999999999887642
Q ss_pred -----HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCH
Q 039706 733 -----KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRL 807 (1166)
Q Consensus 733 -----~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~ 807 (1166)
.++..+|.++...+++++|+.+|+++++..|.... .+..+|.+|...|++
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------------------~~~~la~~~~~~g~~ 230 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR-------------------------ASILLGDLALAQGDY 230 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH-------------------------HHHHHHHHHHHCCCH
Confidence 35678999999999999999999999998775422 145689999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHH
Q 039706 808 EEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAY 887 (1166)
Q Consensus 808 eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay 887 (1166)
++|+..++++....+. .....+..++.+|...|++++|+..+++++... |... .+..++.++
T Consensus 231 ~~A~~~~~~~~~~~p~-------------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~----p~~~-~~~~la~~~ 292 (389)
T PRK11788 231 AAAIEALERVEEQDPE-------------YLSEVLPKLMECYQALGDEAEGLEFLRRALEEY----PGAD-LLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHHHChh-------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCch-HHHHHHHHH
Confidence 9999999997543221 112345667899999999999999999999987 5443 348899999
Q ss_pred HHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH--hhCHHHHHHHHHHHHH
Q 039706 888 KALRHITDAIADCNLAIALDGNYLKAISRRATLYEM--IRDYDHAASDFHRLIA 939 (1166)
Q Consensus 888 ~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~--lGdyeeAi~~yekALe 939 (1166)
...|++++|+..++++++..|++...+..++..+.. .|+..+|+..+++.++
T Consensus 293 ~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999999999999999999999988665444443322 4588888888887775
No 31
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=8.2e-20 Score=213.10 Aligned_cols=152 Identities=26% Similarity=0.382 Sum_probs=104.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++.. ...|+++|++|++||+||+||.+|
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------------------~~~a~~~f~~i~~Ay~vL~d~~kR 64 (369)
T PRK14282 4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN-------------------RKEAEQKFKEIQEAYEVLSDPQKR 64 (369)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc-------------------hhHHHHHHHHHHHHHHHhcChhhH
Confidence 4999999999999999999999999999999997521 135889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCC-CccCCchhhhhhhhhcccC------CCCCCCCceEEeeeeeeeccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNY-PFERSSSRRQWREVRRSYD------NSAARGDIYSISFNLRIASNKRC 1136 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~------~~~~rG~~~~~~~~lsf~ea~~G 1136 (1166)
+.||.++........ .++++.+.. +...| .|+.......|..+|++.. ...++|.++.+.+.|+|+|+++|
T Consensus 65 ~~YD~~g~~~~~~~~-~~~~~~g~~-~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G 142 (369)
T PRK14282 65 AMYDRFGYVGEQPPY-QETESGGGF-FEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLING 142 (369)
T ss_pred HHHhhcCcccccccc-ccCCCCCcc-cccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCC
Confidence 999997653111000 000000000 00000 0110000122444444321 11246889999999999999999
Q ss_pred ccceeeceeeeee-eecceee
Q 039706 1137 YRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1137 ~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
+++.|++.+.+.| +|+|+|.
T Consensus 143 ~~~~i~~~r~~~C~~C~G~G~ 163 (369)
T PRK14282 143 AEIPVEYDRYETCPHCGGTGV 163 (369)
T ss_pred eEEEEEeeecccCCCCCccCC
Confidence 9999999988777 7776653
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=2.7e-17 Score=198.70 Aligned_cols=300 Identities=14% Similarity=0.117 Sum_probs=228.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
...|..++..|++++|+..|..+|+++|.+..+|+.||.||.++|+.++|+..+-.|-.++|.++..|..+.+..
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls----- 217 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS----- 217 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH-----
Confidence 446888888999999999999999999999999999999999999999999999999999999876665554432
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
..+|.+.+|+-+|.+||+..|.+....+.++.+|.++|++..|+..+.+++.+.|... +..
T Consensus 218 -----------------~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d--~er 278 (895)
T KOG2076|consen 218 -----------------EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVD--IER 278 (895)
T ss_pred -----------------HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchh--HHH
Confidence 2368899999999999999999999999999999999999999999999999988211 110
Q ss_pred cCccc---------ccCccchhhhhh---------hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--------
Q 039706 772 NGQSM---------ELDSSESTKHVS---------FRLWRCCLIFKSYFTLGRLEEAIAALERHES----GN-------- 821 (1166)
Q Consensus 772 ~g~~l---------~ld~~~~~~~~~---------~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~----~~-------- 821 (1166)
.-.++ ..+.....+.+. ...--+..++.+|+....++.|+..+..... .+
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 00000 000000000000 0011134567777888888888877765322 00
Q ss_pred ------------CCc---hhhh---hhh---h---------------c--cchHHHHHHhhhhHHHHHcCChHHHHHHHH
Q 039706 822 ------------GGK---MLES---LIP---L---------------A--GTVRELLCRKSAGNEAFQAGRHSEAVEHYT 863 (1166)
Q Consensus 822 ------------~~k---~le~---a~~---L---------------~--~~~~~a~~l~~lG~~~~~~G~yeEAie~y~ 863 (1166)
+.. .+.. ++- + . ........++.++.+|...|+|.+|+.+|.
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 000 0000 000 0 0 012335677889999999999999999999
Q ss_pred HHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 864 AALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 864 kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
.++...+ -.++.+|+.+|.||..+|.+++|++.|+++|.+.|++.++...|+.+|..+|+.++|++.++...
T Consensus 439 ~i~~~~~---~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 439 PITNREG---YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhcCcc---ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9987652 23478999999999999999999999999999999999999999999999999999999999877
No 33
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.2e-19 Score=212.23 Aligned_cols=148 Identities=25% Similarity=0.327 Sum_probs=104.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.||
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---------------------~~a~~~f~~i~~Ay~vL~d~~kR 62 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE---------------------PGAEEKYKEVQEAYETLSDPQKR 62 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------cCHHHHHHHHHHHHHHhcCHhhh
Confidence 499999999999999999999999999999999752 35788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----CCCCCCCceEEeeeeeeeccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----NSAARGDIYSISFNLRIASNKRCYR 1138 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----~~~~rG~~~~~~~~lsf~ea~~G~~ 1138 (1166)
+.||.++.... ..+.+++.++...+.....|+ .....|..+|++.+ ...++|.++.+.+.|+|+|+++|++
T Consensus 63 ~~YD~~G~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~ 138 (380)
T PRK14276 63 AAYDQYGAAGA--NGGFGGGAGGFGGFDGSGGFG--GFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKE 138 (380)
T ss_pred hhHhhcCCccc--cCCCCCCCCCCCCcccccccc--chhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeE
Confidence 99999775311 000000000000000000011 11123455554211 1124688999999999999999999
Q ss_pred ceeeceeeeee-eecceee
Q 039706 1139 PFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1139 K~i~~~~~~~C-~C~G~~q 1156 (1166)
+.|++.+.+.| +|+|+|.
T Consensus 139 ~~i~~~~~~~C~~C~G~G~ 157 (380)
T PRK14276 139 KEVSYNREATCHTCNGSGA 157 (380)
T ss_pred EEEEeeccccCCCCcCccc
Confidence 99999988777 7776654
No 34
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.2e-19 Score=211.46 Aligned_cols=140 Identities=28% Similarity=0.396 Sum_probs=103.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++. ..|+++|++|++||+||+||.||
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---------------------~~~~~~f~~i~~Ay~~L~d~~kR 62 (371)
T PRK14287 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA---------------------PDAEDKFKEVKEAYDTLSDPQKK 62 (371)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHHhCcHhHH
Confidence 499999999999999999999999999999999751 36888999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----CCCCCCCceEEeeeeeeeccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----NSAARGDIYSISFNLRIASNKRCYR 1138 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----~~~~rG~~~~~~~~lsf~ea~~G~~ 1138 (1166)
+.||.++..... . +.++++. .. |+ +....|..+|++.. ...++|.++.+.+.|+|+|+++|++
T Consensus 63 ~~YD~~G~~~~~--~--~~~~~~~----~~--f~--~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~ 130 (371)
T PRK14287 63 AHYDQFGHTDPN--Q--GFGGGGA----GD--FG--GFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKE 130 (371)
T ss_pred HHHHhhCCcccc--c--ccCCCCC----cc--cc--chHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeE
Confidence 999997753110 0 1000000 00 11 11122444444211 1124688999999999999999999
Q ss_pred ceeeceeeeee-eecceee
Q 039706 1139 PFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1139 K~i~~~~~~~C-~C~G~~q 1156 (1166)
+.|++.+.+.| +|+|+|.
T Consensus 131 ~~i~~~r~~~C~~C~G~G~ 149 (371)
T PRK14287 131 TEIEIPREETCGTCHGSGA 149 (371)
T ss_pred EEEEEeeeccCCCCCCccc
Confidence 99999988777 7776653
No 35
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.1e-19 Score=203.53 Aligned_cols=137 Identities=31% Similarity=0.394 Sum_probs=106.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
..||.+|+|.++|+.+|||+|||+||++|||||++ .|.++|++|.+||+|||||+||
T Consensus 4 ~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~-----------------------~~~ekfkei~~AyevLsd~ekr 60 (337)
T KOG0712|consen 4 TKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNP-----------------------DAGEKFKEISQAYEVLSDPEKR 60 (337)
T ss_pred cccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCc-----------------------cHHHHHHHHHHHHHHhcCHHHH
Confidence 47999999999999999999999999999999996 4788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhccc-CCCCCCCCceEEeeeeeeecccccccceee
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSY-DNSAARGDIYSISFNLRIASNKRCYRPFVT 1142 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~rG~~~~~~~~lsf~ea~~G~~K~i~ 1142 (1166)
+.||.+++... +.++.|+++++ | ..|.+ |+++ ..+..||.++...+.|+++|...|.++.+.
T Consensus 61 ~~yD~~g~~~~-~~g~~~~g~~~---------f------~~~F~-~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~ 123 (337)
T KOG0712|consen 61 EIYDQYGEEGL-QGGGGGGGFGG---------F------SQFFG-FGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLF 123 (337)
T ss_pred HHHHhhhhhhh-cccCCCCCCcc---------H------HHhcc-CCCcCccccccCCCceEEEEEEHHHhhcCCcccee
Confidence 99999986432 21111111111 1 11111 2222 223445899999999999999999999999
Q ss_pred ceeeeee-eecceeeeeec
Q 039706 1143 IREFMAC-ACQWRYQIVES 1160 (1166)
Q Consensus 1143 ~~~~~~C-~C~G~~q~~~~ 1160 (1166)
+.....| .|+|+|-.-..
T Consensus 124 l~~~~iCs~C~GsGgksg~ 142 (337)
T KOG0712|consen 124 LSRNFICSKCSGSGGKSGS 142 (337)
T ss_pred cccCccCCcCCCCCCCCCC
Confidence 9999999 99988764433
No 36
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.1e-19 Score=210.54 Aligned_cols=147 Identities=28% Similarity=0.407 Sum_probs=104.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++. ...|+++|++|++||+||+||.+|
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--------------------~~~a~~~f~~i~~Ay~vL~d~~~r 63 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG--------------------NKEAEEKFKEINEAYQVLSDPQKK 63 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--------------------cHHHHHHHHHHHHHHHHhcCHhhh
Confidence 499999999999999999999999999999999752 146889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccC-Cchhhhhhhhhccc-C------CCCCCCCceEEeeeeeeecccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFER-SSSRRQWREVRRSY-D------NSAARGDIYSISFNLRIASNKR 1135 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~-~------~~~~rG~~~~~~~~lsf~ea~~ 1135 (1166)
+.||.++..... .+++.+.++. ..+.+.. +.....|..+|++. + ...++|.++.+.+.|+|+|++.
T Consensus 64 ~~yD~~G~~~~~--~~~~~~~~~~----~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~ 137 (380)
T PRK14297 64 AQYDQFGTADFN--GAGGFGSGGF----GGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVF 137 (380)
T ss_pred CchhhcCccccc--ccCCCCCCCC----CCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcC
Confidence 999997753110 0011000010 0111110 01112344455421 0 1124688999999999999999
Q ss_pred cccceeeceeeeee-eecceee
Q 039706 1136 CYRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1136 G~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
|+++.|++.+.+.| +|+|+|.
T Consensus 138 G~~~~i~~~r~~~C~~C~G~G~ 159 (380)
T PRK14297 138 GVEKEISVTRNENCETCNGTGA 159 (380)
T ss_pred CeEEEEEeeeeccCCCcccccc
Confidence 99999999887777 6666553
No 37
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.8e-19 Score=211.57 Aligned_cols=155 Identities=27% Similarity=0.403 Sum_probs=106.2
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhc
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRS 1064 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~ 1064 (1166)
+||++|||+++++.++||+|||++|++||||+++.. ..|+++|++|++||+||+||.||+
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~kR~ 61 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD--------------------AEAEKRFKEVSEAYEVLSDAQKRE 61 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------hHHHHHHHHHHHHHHHhcCHHHHH
Confidence 899999999999999999999999999999998621 468899999999999999999999
Q ss_pred ccchhhhhhhhhccCCCCCCCCCCC--CC-CCC--CccC--CchhhhhhhhhcccC---------CCCCCCCceEEeeee
Q 039706 1065 RYDLEEETRNTQKKQNGSNTSRTHA--YA-QNY--PFER--SSSRRQWREVRRSYD---------NSAARGDIYSISFNL 1128 (1166)
Q Consensus 1065 ~YD~~~~~~~~~~~~~g~~~~~~~~--~~-~~~--~f~~--~~~~~~~~~~~~~~~---------~~~~rG~~~~~~~~l 1128 (1166)
.||.++...... +.++.++++... +. ..| .|+. +.....|..+|++.+ ...++|.++.+.+.|
T Consensus 62 ~YD~~G~~g~~~-g~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~v 140 (391)
T PRK14284 62 SYDRYGKDGPFA-GAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITL 140 (391)
T ss_pred HHHhcccccccc-ccCCcCCCCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEE
Confidence 999987531100 000000001000 00 000 0110 000122333443211 112467899999999
Q ss_pred eeecccccccceeeceeeeee-eecceeeeeec
Q 039706 1129 RIASNKRCYRPFVTIREFMAC-ACQWRYQIVES 1160 (1166)
Q Consensus 1129 sf~ea~~G~~K~i~~~~~~~C-~C~G~~q~~~~ 1160 (1166)
+|+|+++|+++.|++.+.+.| +|+|+|...-.
T Consensus 141 slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 173 (391)
T PRK14284 141 SFEEAAKGVEKELLVSGYKSCDACSGSGANSSQ 173 (391)
T ss_pred EHHHHhCCeeEEEEEeeeccCCCCcccccCCCC
Confidence 999999999999999988888 78777654333
No 38
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.79 E-value=1.7e-19 Score=212.24 Aligned_cols=132 Identities=27% Similarity=0.413 Sum_probs=100.6
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||++|||+++|+.+|||+|||++|++|||||++ .+++|++|++||+||+||.|
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~------------------------~~e~F~~i~~AYevLsD~~k 82 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG------------------------DPEKFKEISRAYEVLSDPEK 82 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc------------------------hHHHHHHHHHHHHHhccHHH
Confidence 359999999999999999999999999999999974 13689999999999999999
Q ss_pred hcccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC--CCCCCCCceEEeeeeeeecccccccce
Q 039706 1063 RSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD--NSAARGDIYSISFNLRIASNKRCYRPF 1140 (1166)
Q Consensus 1063 R~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~--~~~~rG~~~~~~~~lsf~ea~~G~~K~ 1140 (1166)
|+.||.++.... . ++..+. + ....|..+|++.. ...++|.++.+.+.|+|+|+++|+++.
T Consensus 83 R~~YD~~G~~~~--~---~~~~~~---d----------~~d~f~~~Fggg~~~~~~~rg~di~~~l~vtLee~~~G~~~~ 144 (421)
T PTZ00037 83 RKIYDEYGEEGL--E---GGEQPA---D----------ASDLFDLIFGGGRKPGGKKRGEDIVSHLKVTLEQIYNGAMRK 144 (421)
T ss_pred HHHHhhhcchhc--c---cCCCCc---c----------hhhhHHHhhccccccccccCCCCEEEEeeeeHHHHhCCCceE
Confidence 999999765211 0 000000 0 0112333333211 223568999999999999999999999
Q ss_pred eeceeeeee-eecceee
Q 039706 1141 VTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1141 i~~~~~~~C-~C~G~~q 1156 (1166)
|++...+.| +|+|+|.
T Consensus 145 i~~~r~~~C~~C~G~G~ 161 (421)
T PTZ00037 145 LAINKDVICANCEGHGG 161 (421)
T ss_pred EEeeccccccccCCCCC
Confidence 999988888 7777663
No 39
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.9e-19 Score=208.83 Aligned_cols=140 Identities=29% Similarity=0.375 Sum_probs=103.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~---------------------~~a~~~f~~i~~Ay~vL~d~~~r 61 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD---------------------EEAQEKFKEISVAYEVLSDPEKR 61 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc---------------------HHHHHHHHHHHHHHHHhchhhhh
Confidence 489999999999999999999999999999999852 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC------CCCCCCCceEEeeeeeeecccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD------NSAARGDIYSISFNLRIASNKRCY 1137 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~------~~~~rG~~~~~~~~lsf~ea~~G~ 1137 (1166)
+.||.++.... . ++++.++. .. .|+ +....|..+|++.+ ...++|.++.+.+.|+|+|+++|+
T Consensus 62 ~~YD~~G~~~~---~-~~~~~~g~---~~--~f~--~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~ 130 (378)
T PRK14278 62 RIVDLGGDPLE---S-AGGGGGGF---GG--GFG--GLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGV 130 (378)
T ss_pred hhhhccCCccc---c-ccCCCCCC---Cc--CcC--chhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCe
Confidence 99999765211 0 01000000 00 111 11123445554321 012368899999999999999999
Q ss_pred cceeeceeeeee-eeccee
Q 039706 1138 RPFVTIREFMAC-ACQWRY 1155 (1166)
Q Consensus 1138 ~K~i~~~~~~~C-~C~G~~ 1155 (1166)
++.|++...+.| +|+|+|
T Consensus 131 ~~~i~~~~~~~C~~C~G~G 149 (378)
T PRK14278 131 TKQVTVDTAVLCDRCHGKG 149 (378)
T ss_pred EEEEEEEeeccCCCCcCcc
Confidence 999999988777 776655
No 40
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3e-19 Score=208.79 Aligned_cols=145 Identities=27% Similarity=0.381 Sum_probs=104.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~---------------------~~a~~~f~~i~~Ay~vL~d~~kr 62 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE---------------------EGADEKFKEISEAYEVLSDDQKR 62 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHhccHhHH
Confidence 499999999999999999999999999999999752 35889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----CCCCCCCceEEeeeeeeeccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----NSAARGDIYSISFNLRIASNKRCYR 1138 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----~~~~rG~~~~~~~~lsf~ea~~G~~ 1138 (1166)
+.||.++..... .+.+.++.+...+...|.|+ ..|..+|++.+ ...++|.++.+.+.|+|+|+++|++
T Consensus 63 ~~yD~~G~~~~~--~~~~~~~~~~~~~~~~~~~~-----d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~ 135 (376)
T PRK14280 63 AQYDQFGHAGPN--QGFGGGGFGGGDFGGGFGFE-----DIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKE 135 (376)
T ss_pred HHHHhcCccccc--cCcCCCCCCCCCccccccch-----hhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCce
Confidence 999997753110 00000000000000001111 23444554211 1124688999999999999999999
Q ss_pred ceeeceeeeee-eecceee
Q 039706 1139 PFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1139 K~i~~~~~~~C-~C~G~~q 1156 (1166)
+.|++.+.+.| +|+|+|.
T Consensus 136 ~~i~~~r~~~C~~C~G~G~ 154 (376)
T PRK14280 136 KEIEIPKEETCDTCHGSGA 154 (376)
T ss_pred eEEEEeeeccCCCCCCccc
Confidence 99999998888 7877664
No 41
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.2e-19 Score=208.27 Aligned_cols=143 Identities=29% Similarity=0.382 Sum_probs=103.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~vL~d~~kR 63 (377)
T PRK14298 5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE---------------------PDAEEKFKEISEAYAVLSDAEKR 63 (377)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC---------------------hhHHHHHHHHHHHHHHhcchHhh
Confidence 499999999999999999999999999999999752 35788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC----CCCCCCCceEEeeeeeeecccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD----NSAARGDIYSISFNLRIASNKRCYRP 1139 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~----~~~~rG~~~~~~~~lsf~ea~~G~~K 1139 (1166)
+.||.++.... .. +.++.+.... . .|+ +....|..+|++.. ...++|.++.+.+.|+|+|+++|+++
T Consensus 64 ~~YD~~G~~g~--~~--~~~~~~~~~~-~--~~~--~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~ 134 (377)
T PRK14298 64 AQYDRFGHAGI--DN--QYSAEDIFRG-A--DFG--GFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRK 134 (377)
T ss_pred hhhhhcCcccc--cc--ccCccccccc-C--CcC--cchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEE
Confidence 99999775211 00 0000000000 0 011 00122444444211 12346889999999999999999999
Q ss_pred eeeceeeeee-eecceee
Q 039706 1140 FVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1140 ~i~~~~~~~C-~C~G~~q 1156 (1166)
.|++...+.| +|+|+|.
T Consensus 135 ~i~~~r~~~C~~C~G~G~ 152 (377)
T PRK14298 135 DIDVPRAERCSTCSGTGA 152 (377)
T ss_pred EEEEEeeccCCCCCCCcc
Confidence 9999988877 7776654
No 42
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.7e-19 Score=207.59 Aligned_cols=146 Identities=27% Similarity=0.380 Sum_probs=104.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++.. ..|+++|++|++||+||+||.+|
T Consensus 4 ~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~kr 63 (373)
T PRK14301 4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN--------------------PEAEQKFKEAAEAYEVLRDAEKR 63 (373)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC--------------------hHHHHHHHHHHHHHHHhcchhhh
Confidence 4999999999999999999999999999999997521 36888999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhc--cc----CCCCCCCCceEEeeeeeeecccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRR--SY----DNSAARGDIYSISFNLRIASNKRCY 1137 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~--~~----~~~~~rG~~~~~~~~lsf~ea~~G~ 1137 (1166)
+.||.++.... . +++ ++++.. +..+ .|+ .....|..+|+ +. .....+|.++.+.+.|+|+|++.|+
T Consensus 64 ~~yD~~g~~g~--~-~~~-~~~g~~-~~~~-~~~--~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~ 135 (373)
T PRK14301 64 ARYDRFGHAGV--N-GNG-GFGGFS-SAED-IFS--HFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGD 135 (373)
T ss_pred hhhhhcccccc--c-cCC-CCCCcc-cccc-ccc--chHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCc
Confidence 99999775311 0 001 001110 0000 111 00112233332 10 1122468899999999999999999
Q ss_pred cceeeceeeeee-eecceeee
Q 039706 1138 RPFVTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1138 ~K~i~~~~~~~C-~C~G~~q~ 1157 (1166)
++.|++.+.+.| +|+|+|..
T Consensus 136 ~k~i~~~r~~~C~~C~G~G~~ 156 (373)
T PRK14301 136 EVTLRIPKNVTCDDCGGSGAA 156 (373)
T ss_pred eEEEEeeecccCCCCCCcccC
Confidence 999999888887 77776653
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=6.6e-17 Score=196.26 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF-LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~-~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
...+|++|.+|..+|+|++|..+|.++++.+|++ .-+++.+|..|+..|+++.|..+|+++++..|++.....++.-++
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 3458999999999999999999999999999998 889999999999999999999999999999999998888887777
Q ss_pred HHh
Q 039706 687 DGL 689 (1166)
Q Consensus 687 ~~L 689 (1166)
...
T Consensus 387 a~~ 389 (1018)
T KOG2002|consen 387 AHS 389 (1018)
T ss_pred Hhh
Confidence 666
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.8e-16 Score=179.71 Aligned_cols=285 Identities=12% Similarity=0.089 Sum_probs=235.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAI-DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALel-dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
-++.++..+.+.++|+..+++.+.. -|.+...-...|.++..+.++++|+..|+.+++.+|-...+...+..++-....
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 3567777888999999999999988 789988889999999999999999999999999999766665555554433333
Q ss_pred HHhHHHHHHHHHHHHH------------hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 692 AQKVSECMQRSAQLLQ------------NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~------------~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
..++.-+.......-. +...++.++|+.+|++||+++|....+|.++|.-|..+.+...|+..|++|+
T Consensus 312 ~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 2222211111111000 1236789999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHH
Q 039706 760 HFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVREL 839 (1166)
Q Consensus 760 el~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a 839 (1166)
+++|.+..+ |+-||++|..++.+.=|+-+|++|....| .+.
T Consensus 392 di~p~DyRA-------------------------WYGLGQaYeim~Mh~YaLyYfqkA~~~kP--------------nDs 432 (559)
T KOG1155|consen 392 DINPRDYRA-------------------------WYGLGQAYEIMKMHFYALYYFQKALELKP--------------NDS 432 (559)
T ss_pred hcCchhHHH-------------------------HhhhhHHHHHhcchHHHHHHHHHHHhcCC--------------Cch
Confidence 999976443 46699999999999999999999854333 345
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-------hCCChHH
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA-------LDGNYLK 912 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALe-------ldP~~~~ 912 (1166)
..|..+|++|.+.++.++|+.+|.+|+... ..+..++..+|.+|.+++++.+|..+|++.++ .+|.-.+
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~----dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLG----DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcc----ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 567778999999999999999999999887 66778999999999999999999999999998 5677788
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
+..-||.-+.+.++|++|-.+..+++.-
T Consensus 509 a~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9999999999999999999998888755
No 45
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.6e-19 Score=207.81 Aligned_cols=158 Identities=25% Similarity=0.302 Sum_probs=105.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++.. ..|+++|++|++||+||+||.+|
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~~r 68 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD--------------------AKAEERFKEISEAYDVLSDEKKR 68 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--------------------hhHHHHHHHHHHHHHHHCchhhH
Confidence 4999999999999999999999999999999997521 36889999999999999999999
Q ss_pred cccch----hhhhhhhhccCCCCCCCCCCCCCCCCCccC------Cchh-hhhhhhhccc-C-----CCCCCCCceEEee
Q 039706 1064 SRYDL----EEETRNTQKKQNGSNTSRTHAYAQNYPFER------SSSR-RQWREVRRSY-D-----NSAARGDIYSISF 1126 (1166)
Q Consensus 1064 ~~YD~----~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~------~~~~-~~~~~~~~~~-~-----~~~~rG~~~~~~~ 1126 (1166)
+.||. ++.... ....+++++++...+..+ .|+. .++. ..|.++|+.+ + ...++|.++.+.+
T Consensus 69 ~~yD~~~~~~G~~g~-~~~~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l 146 (389)
T PRK14295 69 KEYDEARSLFGNGGF-RPGPGGGGGGGFNFDLGD-LFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEV 146 (389)
T ss_pred HHHHHHHhhhccccc-ccCCCCCCCCCCCccccc-ccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEE
Confidence 99998 443211 000000000000000000 0110 0000 0122333321 1 1224688999999
Q ss_pred eeeeecccccccceeeceeeeee-eecceeeeeecccc
Q 039706 1127 NLRIASNKRCYRPFVTIREFMAC-ACQWRYQIVESQTE 1163 (1166)
Q Consensus 1127 ~lsf~ea~~G~~K~i~~~~~~~C-~C~G~~q~~~~~~~ 1163 (1166)
.|+|+|++.|+++.|++.+.+.| +|+|+|...-..+.
T Consensus 147 ~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~ 184 (389)
T PRK14295 147 TLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPR 184 (389)
T ss_pred EEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCc
Confidence 99999999999999999988888 77777654433333
No 46
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.3e-19 Score=206.45 Aligned_cols=146 Identities=25% Similarity=0.395 Sum_probs=102.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~vLsd~~kR 61 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---------------------PEAEEKFKEINEAYQVLSDPEKR 61 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------ccHHHHHHHHHHHHHHhcCHHHH
Confidence 499999999999999999999999999999999852 36788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhh---------ccc----C-----CCCCCCCceEEe
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVR---------RSY----D-----NSAARGDIYSIS 1125 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~---------~~~----~-----~~~~rG~~~~~~ 1125 (1166)
+.||.++..... .. +....+...+ ..+.+. .....|.++| ++. . ....+|.++.+.
T Consensus 62 ~~YD~~g~~~~~--~~-~~~~~~~~~~-~~~~~~--~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~ 135 (382)
T PRK14291 62 KLYDQFGHAAFS--GS-GQQQQGQEGF-SDFGGG--NIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQT 135 (382)
T ss_pred HHHhhhcccccc--cc-cCcccccccc-ccccCC--CHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEE
Confidence 999997753211 00 0000000000 001000 0111122221 110 0 012257899999
Q ss_pred eeeeeecccccccceeeceeeeee-eecceee
Q 039706 1126 FNLRIASNKRCYRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1126 ~~lsf~ea~~G~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
+.|+|+|+++|+++.|++.+.+.| +|+|+|.
T Consensus 136 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~ 167 (382)
T PRK14291 136 VEISLEEAYTGTTVSLEVPRYVPCEACGGTGY 167 (382)
T ss_pred EEEEHHHhhCCEEEEEEEeeeccCCCCccccC
Confidence 999999999999999999988888 7877664
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.1e-16 Score=175.53 Aligned_cols=284 Identities=16% Similarity=0.168 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CchhHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGS--DVCVDQKIAVE 684 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P--~n~~a~~~l~E 684 (1166)
+.+.+|..|.++...|....|+..|..++...|-++.||..|+.+..... .......--| ..+.....+..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e-------~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE-------ILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH-------HHHHHHhcCcccchHHHHHHHHH
Confidence 35778999999999999999999999999999999999999988764321 1111111112 11111122222
Q ss_pred HHHHhhhH-------HhHHHH------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHH--------------
Q 039706 685 ASDGLQKA-------QKVSEC------MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEM-------------- 737 (1166)
Q Consensus 685 a~~~L~k~-------~~~~e~------~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~-------------- 737 (1166)
++..+... ...... +.....+...+.+.++++|+..|+.+++.+|...+-.-.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 22222211 111110 111122222456889999999999999999864322222
Q ss_pred --------------------HHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHH
Q 039706 738 --------------------KAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLI 797 (1166)
Q Consensus 738 --------------------lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lL 797 (1166)
+|..|...++.++|+.+|+++|+++|....+ |.++
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a-------------------------WTLm 370 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSA-------------------------WTLM 370 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHH-------------------------HHHh
Confidence 2333444556677777777777777754332 3557
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhH
Q 039706 798 FKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA 877 (1166)
Q Consensus 798 A~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a 877 (1166)
|.-|..+.+...|+..|++|++ ..+.+-.+|+.+|++|--.+-..=|+-+|++|+++- |.+.
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvd--------------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k----PnDs 432 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVD--------------INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK----PNDS 432 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHh--------------cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC----CCch
Confidence 7777777777777777777633 334455667777777777777777777777777766 7777
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.+|..+|.||.++++.++|+.+|.+|+........++..+|.+|..++++.+|..+|++.++.
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777667777777777777777777777777777764
No 48
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.1e-18 Score=203.98 Aligned_cols=146 Identities=29% Similarity=0.416 Sum_probs=104.2
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++|+.++||+|||++|++||||+++.. ..|+++|++|++||++|+||.+|
T Consensus 4 ~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~~L~d~~~r 63 (371)
T PRK10767 4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD--------------------KEAEEKFKEIKEAYEVLSDPQKR 63 (371)
T ss_pred CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------------------HHHHHHHHHHHHHHHHhcchhhh
Confidence 4999999999999999999999999999999997521 35889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhccc----CCCCCCCCceEEeeeeeeecccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSY----DNSAARGDIYSISFNLRIASNKRCYRP 1139 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~rG~~~~~~~~lsf~ea~~G~~K 1139 (1166)
+.||.++..... .+.+.+ +..+. . .|.. .....|..+|++. ....++|.++.+.+.|+|+|+++|+++
T Consensus 64 ~~yd~~g~~~~~--~~~~~~--~~~~~-~--~~~~-~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~ 135 (371)
T PRK10767 64 AAYDQYGHAAFE--QGGGGG--GFGGG-G--GFGD-IFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTK 135 (371)
T ss_pred hHhhhccccccc--cCCCCC--CCCCc-c--cccc-chhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeE
Confidence 999997653110 000000 00000 0 0110 0001122333220 011246889999999999999999999
Q ss_pred eeeceeeeee-eecceeee
Q 039706 1140 FVTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1140 ~i~~~~~~~C-~C~G~~q~ 1157 (1166)
.|.+...+.| +|+|+|..
T Consensus 136 ~v~~~r~~~C~~C~G~G~~ 154 (371)
T PRK10767 136 EIRIPTLVTCDTCHGSGAK 154 (371)
T ss_pred EEeeeecccCCCCCCcccC
Confidence 9999998888 88877653
No 49
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.2e-18 Score=203.30 Aligned_cols=145 Identities=30% Similarity=0.399 Sum_probs=103.8
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++.. ..|+++|++|++||+||+||.+|
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~~~~~f~~~~~Ay~vL~d~~~r 63 (366)
T PRK14294 4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD--------------------KEAEELFKEAAEAYEVLSDPKKR 63 (366)
T ss_pred CChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------------------hHHHHHHHHHHHHHHHhccHHHH
Confidence 4999999999999999999999999999999997521 36888999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhc-c-cC-----CCCCCCCceEEeeeeeeeccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRR-S-YD-----NSAARGDIYSISFNLRIASNKRC 1136 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~-~-~~-----~~~~rG~~~~~~~~lsf~ea~~G 1136 (1166)
+.||.++.... . +++.++.+. +. + .|+ .....|.++|+ + .. ...++|.++.+.+.|+|+|+++|
T Consensus 64 ~~yD~~G~~g~--~-~~~~~~~~~--~~-~-~~~--~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G 134 (366)
T PRK14294 64 GIYDQYGHEGL--S-GTGFSGFSG--FD-D-IFS--SFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFG 134 (366)
T ss_pred HHHHhhccccc--c-CCCCCCcCc--cc-c-chh--hhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCC
Confidence 99999875311 0 011100000 00 0 011 00112344443 1 10 11245889999999999999999
Q ss_pred ccceeeceeeeee-eecceeee
Q 039706 1137 YRPFVTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1137 ~~K~i~~~~~~~C-~C~G~~q~ 1157 (1166)
+++.|++...+.| +|+|+|..
T Consensus 135 ~~~~i~~~r~~~C~~C~G~G~~ 156 (366)
T PRK14294 135 TEKEIRIQKLETCEECHGSGCE 156 (366)
T ss_pred eEEEEEeeecccCCCCCCcccc
Confidence 9999999888777 77766543
No 50
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.8e-18 Score=203.38 Aligned_cols=148 Identities=28% Similarity=0.405 Sum_probs=103.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++.. ..|+++|++|++||++|+||.+|
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~~r 62 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN--------------------KEAEEHFKEVNEAYEVLSNDDKR 62 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--------------------hHHHHHHHHHHHHHHHhhhhhhh
Confidence 4899999999999999999999999999999997521 36888999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhccc---------------CC--------CCCCCC
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSY---------------DN--------SAARGD 1120 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~---------------~~--------~~~rG~ 1120 (1166)
+.||.++..........+.+ ++.... .+.|. ..+..|..+|++. +. ...+|.
T Consensus 63 ~~yD~~g~~~~~~~~~~~~~-~~~~~~--~~~~~--d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 137 (397)
T PRK14281 63 RRYDQFGHAGVGSSAASGGG-PGYGGG--GGDFN--DIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGT 137 (397)
T ss_pred hhhhhccchhhccccccCCC-CCCCcC--CCCHH--HHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCC
Confidence 99999765321100000000 000000 00010 0011122333210 00 013578
Q ss_pred ceEEeeeeeeecccccccceeeceeeeee-eecceee
Q 039706 1121 IYSISFNLRIASNKRCYRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1121 ~~~~~~~lsf~ea~~G~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
++.+.+.|+|+|+++|+++.|++.+.+.| +|+|+|.
T Consensus 138 di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~ 174 (397)
T PRK14281 138 DLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGS 174 (397)
T ss_pred CEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCccc
Confidence 99999999999999999999999998888 8887664
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.75 E-value=2.9e-16 Score=193.43 Aligned_cols=259 Identities=11% Similarity=0.015 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHcCCCch
Q 039706 609 WRLSNRAATRMAL---GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG---------EIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 609 ~ay~nrA~ayl~l---G~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG---------d~eeAl~~fekALel~P~n~ 676 (1166)
+.+|.+|..++.. +.+++|+..|++|++++|++..+|..+|.+|..++ ++++|+..++++++++|++.
T Consensus 259 ~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~ 338 (553)
T PRK12370 259 TMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP 338 (553)
T ss_pred HHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH
Confidence 4467777766544 35789999999999999999999999999987553 36777777777777777754
Q ss_pred hHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHH
Q 039706 677 VDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCE 756 (1166)
Q Consensus 677 ~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~le 756 (1166)
..+..+ +.+ +...|++++|+.+|+++++++|.++.+++.+|.+|..+|++++|+..++
T Consensus 339 ~a~~~l--------------------g~~--~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 339 QALGLL--------------------GLI--NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHH--------------------HHH--HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 332211 111 1135677777777777777777777777777777777777777777777
Q ss_pred HHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch
Q 039706 757 QTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV 836 (1166)
Q Consensus 757 kALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~ 836 (1166)
++++++|.+... +..++.+++..|++++|+..+++++... .+
T Consensus 397 ~Al~l~P~~~~~-------------------------~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------------~p 438 (553)
T PRK12370 397 ECLKLDPTRAAA-------------------------GITKLWITYYHTGIDDAIRLGDELRSQH-------------LQ 438 (553)
T ss_pred HHHhcCCCChhh-------------------------HHHHHHHHHhccCHHHHHHHHHHHHHhc-------------cc
Confidence 777777754321 1112333444555666666555542211 01
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
.....+..+|.++...|++++|+..+.+++... |....++..++..|..+|+ +|...+++.++..-....-...
T Consensus 439 ~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~ 512 (553)
T PRK12370 439 DNPILLSMQVMFLSLKGKHELARKLTKEISTQE----ITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGL 512 (553)
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc----chhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH
Confidence 112233444555555555555555555554433 4444455555555555552 4444444444332221111222
Q ss_pred HHHHHHHhhCHHHHHHH
Q 039706 917 RATLYEMIRDYDHAASD 933 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~ 933 (1166)
.+.+|.-.|+-+.|..+
T Consensus 513 ~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 513 LPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHHHHHHHhhhHHHHHH
Confidence 44455555555544444
No 52
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.7e-18 Score=202.82 Aligned_cols=150 Identities=25% Similarity=0.357 Sum_probs=103.4
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||.++|+.+|||+|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~a~~~f~~i~~Ay~~Lsd~~kR 63 (378)
T PRK14283 5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---------------------EGAEEKFKEISEAYAVLSDDEKR 63 (378)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHhchhHHH
Confidence 499999999999999999999999999999999752 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCC-CccCCchhhhhhhh-hcccC-CCCCCCCceEEeeeeeeecccccccce
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNY-PFERSSSRRQWREV-RRSYD-NSAARGDIYSISFNLRIASNKRCYRPF 1140 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~-~f~~~~~~~~~~~~-~~~~~-~~~~rG~~~~~~~~lsf~ea~~G~~K~ 1140 (1166)
+.||.+++... . ................+ .|.. +....|..+ |++.. ...++|.++.+.+.|+|+|+++|+++.
T Consensus 64 ~~YD~~G~~g~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~ 140 (378)
T PRK14283 64 QRYDQFGHAGM-D-GFSQEDIFNNINFEDIFQGFGF-GIGNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKD 140 (378)
T ss_pred HHHhhhccccc-c-cccccccccccCcccccccccc-chhhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceE
Confidence 99999765311 0 00000000000000000 0000 000111111 12111 112468899999999999999999999
Q ss_pred eeceeeeee-eecceeee
Q 039706 1141 VTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1141 i~~~~~~~C-~C~G~~q~ 1157 (1166)
|++.+.+.| +|+|+|..
T Consensus 141 i~~~r~~~C~~C~G~G~~ 158 (378)
T PRK14283 141 IKVRHTKKCPVCNGSRAE 158 (378)
T ss_pred EEeeeeccCCCCCccccC
Confidence 999999888 88887653
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.3e-16 Score=179.00 Aligned_cols=183 Identities=15% Similarity=0.086 Sum_probs=152.3
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
..+++..|+..--..+++++.+.++++.++.|++...+.+.|+..++++|.++|+....-.. ... .-
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~-----------~~~--~k 247 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA-----------SMM--PK 247 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH-----------hhh--HH
Confidence 37999999999999999999999999999999999999999999999999999976543000 000 00
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
.+..+..-|.-.+..|++.+|.+.|..++..+|.. ....+..|.+++.+..++|+..+||...+.|+.++
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n----------~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN----------KKTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc----------cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 12234567888999999999999999998888763 23456778899999999999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 870 VESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 870 ~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
+....+|..+|.||+.+++|++|+++|++|+++..+ ......+..+
T Consensus 318 ----~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 318 ----SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA 363 (486)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence 999999999999999999999999999999998766 4443333333
No 54
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.74 E-value=3e-18 Score=199.43 Aligned_cols=147 Identities=29% Similarity=0.388 Sum_probs=105.5
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhc
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRS 1064 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~ 1064 (1166)
+||++|||+++++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.+|+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~vL~d~~~R~ 59 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD---------------------KEAEEKFKEINEAYEVLSDPEKRA 59 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------ccHHHHHHHHHHHHHHhhChHHHH
Confidence 69999999999999999999999999999999751 357889999999999999999999
Q ss_pred ccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-------CCCCCCCceEEeeeeeeecccccc
Q 039706 1065 RYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-------NSAARGDIYSISFNLRIASNKRCY 1137 (1166)
Q Consensus 1065 ~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-------~~~~rG~~~~~~~~lsf~ea~~G~ 1137 (1166)
.||.++..... .+.+.+..+...+ ....|+ .....|..+|++.. ...++|.++.+.+.|+|+|+++|+
T Consensus 60 ~yd~~g~~~~~--~~~~~~~~~~~~~-~~~~~~--~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~ 134 (354)
T TIGR02349 60 QYDQFGHAGFN--GGGGGGGGGFNGF-DIGFFG--DFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGV 134 (354)
T ss_pred hhhhccccccc--ccCcCCCCCcCCc-cccCcC--chhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCe
Confidence 99997653111 0001000000000 000111 11123444554311 122468899999999999999999
Q ss_pred cceeeceeeeee-eecceeee
Q 039706 1138 RPFVTIREFMAC-ACQWRYQI 1157 (1166)
Q Consensus 1138 ~K~i~~~~~~~C-~C~G~~q~ 1157 (1166)
++.|++.+.+.| +|+|+|..
T Consensus 135 ~~~i~~~r~~~C~~C~G~G~~ 155 (354)
T TIGR02349 135 EKEIEIPRKESCETCHGTGAK 155 (354)
T ss_pred eEEEEeecCCcCCCCCCCCCC
Confidence 999999999988 88887753
No 55
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.6e-18 Score=200.70 Aligned_cols=153 Identities=27% Similarity=0.405 Sum_probs=107.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++||+|||++|++||||+++. ..|+++|++|++||++|+||.+|
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~~L~d~~~r 61 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA---------------------KDAEKKFKEINAAYDVLKDEQKR 61 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------cCHHHHHHHHHHHHHHhhhHhHh
Confidence 489999999999999999999999999999999752 25788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhccc----CC-----CCCCCCceEEeeeeeeeccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSY----DN-----SAARGDIYSISFNLRIASNK 1134 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~~-----~~~rG~~~~~~~~lsf~ea~ 1134 (1166)
+.||.++..... ...+.++.+.. ..| .. .....|.++|+.+ .. ...+|.++.+.+.|+|+|++
T Consensus 62 ~~yD~~G~~~~~--~~~~~~~~g~~---~~~--~~-~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~ 133 (372)
T PRK14300 62 AAYDRFGHDAFQ--NQQSRGGGGNH---GGF--HP-DINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAF 133 (372)
T ss_pred hHHHhccccccc--cccccCCCCCC---Ccc--cc-chhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHh
Confidence 999997653111 00000000000 000 00 0001133333221 10 11368899999999999999
Q ss_pred ccccceeeceeeeee-eecceeeeeecccccc
Q 039706 1135 RCYRPFVTIREFMAC-ACQWRYQIVESQTEDC 1165 (1166)
Q Consensus 1135 ~G~~K~i~~~~~~~C-~C~G~~q~~~~~~~~c 1165 (1166)
.|+++.|++.+.+.| +|+|+|...-.++..|
T Consensus 134 ~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C 165 (372)
T PRK14300 134 HGIEKNISFSSEVKCDTCHGSGSEKGETVTTC 165 (372)
T ss_pred CCceEEEEeeeccccCCCCCcccCCCCCCccC
Confidence 999999999999888 8888775443333433
No 56
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=4.1e-18 Score=200.14 Aligned_cols=148 Identities=29% Similarity=0.428 Sum_probs=104.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.+||++|||++|++||||+++.. +.|+++|++|++||++|+||.+|
T Consensus 5 ~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------------------~~a~~~f~~i~~Ay~~L~d~~~R 64 (386)
T PRK14289 5 RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD--------------------KEAEEKFKEAAEAYDVLSDPDKR 64 (386)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--------------------hHHHHHHHHHHHHHHHhcCHHHH
Confidence 4999999999999999999999999999999998521 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhccc----------C-----CCCCCCCceEEeeee
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSY----------D-----NSAARGDIYSISFNL 1128 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----------~-----~~~~rG~~~~~~~~l 1128 (1166)
+.||.++.... ..+.+.++..+ . .+.+. ..+..|.++|+++ . ....+|.++.+.+.|
T Consensus 65 ~~yD~~G~~~~--~~~~~~~~~~~--~--~~~~~--~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~v 136 (386)
T PRK14289 65 SRYDQFGHAGV--GGAAGGGGFSG--E--GMSME--DIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKL 136 (386)
T ss_pred HHHHHhccccc--ccCCCCCCCCC--C--CcChh--hhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEE
Confidence 99999775311 00001000000 0 00000 0001121122210 0 012357899999999
Q ss_pred eeecccccccceeeceeeeee-eecceeeeee
Q 039706 1129 RIASNKRCYRPFVTIREFMAC-ACQWRYQIVE 1159 (1166)
Q Consensus 1129 sf~ea~~G~~K~i~~~~~~~C-~C~G~~q~~~ 1159 (1166)
+|+|+++|+++.|++.+.+.| +|+|+|...-
T Consensus 137 sLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 168 (386)
T PRK14289 137 NLKEISTGVEKKFKVKKYVPCSHCHGTGAEGN 168 (386)
T ss_pred EHHHhhCCeEEEEEEEeecccCCCCCCCCCCC
Confidence 999999999999999999988 8887775433
No 57
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5.4e-18 Score=197.64 Aligned_cols=145 Identities=28% Similarity=0.374 Sum_probs=103.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++|++|||++|++||||+++.. ...|+++|++|++||++|+||.+|
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------------------~~~a~~~f~~i~~Ay~~L~d~~~r 63 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN-------------------KAEAEEKFKEISEAYEVLSDPQKR 63 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------------------hhHHHHHHHHHHHHHHHhcChhhh
Confidence 4899999999999999999999999999999997521 236889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhccc-C--------C-CC--CCCCceEEeeeeeee
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSY-D--------N-SA--ARGDIYSISFNLRIA 1131 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~--------~-~~--~rG~~~~~~~~lsf~ 1131 (1166)
+.||.++..... .++++.. . .... .|+ .....|..+|++. . . .. ++|.++.+.+.|+|+
T Consensus 64 ~~yd~~G~~~~~---~~~~~~~-~-~~~~--~~~--~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLe 134 (365)
T PRK14290 64 RQYDQTGTVDFG---AGGSNFN-W-DNFT--HFS--DINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLE 134 (365)
T ss_pred hhhcccCCcccc---cCCCCcc-c-cccc--ccc--chhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHH
Confidence 999997653110 0000000 0 0000 011 1112244444421 0 0 01 127799999999999
Q ss_pred cccccccceeeceeeeee-eecceee
Q 039706 1132 SNKRCYRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1132 ea~~G~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
|++.|+++.|++.+.+.| +|+|+|.
T Consensus 135 e~~~G~~~~i~~~r~~~C~~C~G~g~ 160 (365)
T PRK14290 135 DAYYGTEKRIKYRRNAMCPDCSGTGA 160 (365)
T ss_pred HhcCCEEEEEEeeecccCCCCccccC
Confidence 999999999999988888 7777664
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.8e-16 Score=180.62 Aligned_cols=242 Identities=18% Similarity=0.155 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
++..+|..++-.|++..|..+|+.+|.++|.+...|+.+|.+|....+.++-.+.|.
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~----------------------- 384 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFN----------------------- 384 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHH-----------------------
Confidence 344555555666666666666666666666665556666666555555555555444
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
+|..++|.++++|+.+|.+++-+++|++|+..|++++.++|.+..+
T Consensus 385 ---------------------------------~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~- 430 (606)
T KOG0547|consen 385 ---------------------------------KAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA- 430 (606)
T ss_pred ---------------------------------HHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH-
Confidence 4555666677788888888888888888888888888888866432
Q ss_pred cccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 770 DANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 770 ~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
+..++.+.+++++++++...|+.+...-| ...+.+...|.++
T Consensus 431 ------------------------~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP--------------~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 431 ------------------------YIQLCCALYRQHKIAESMKTFEEAKKKFP--------------NCPEVYNLFAEIL 472 (606)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CCchHHHHHHHHH
Confidence 44567777888888888888887633222 2234444458889
Q ss_pred HHcCChHHHHHHHHHHHhccccCCc--hhHHHHHHHHHHHH-HhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 850 FQAGRHSEAVEHYTAALSCTVESHP--FAAICFCNRAAAYK-ALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e~~p--~~a~a~~nlA~ay~-~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
..+++|+.|++.|..|+.+.+..+. .++..+.+.|.+.. -.+++..|+..+++|+++||..-.|+..||.+.+.+|+
T Consensus 473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998832111 14555555554433 34889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHH
Q 039706 927 YDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 927 yeeAi~~yekALeL~P~~~e 946 (1166)
.++|++.|++++.+.....+
T Consensus 553 i~eAielFEksa~lArt~~E 572 (606)
T KOG0547|consen 553 IDEAIELFEKSAQLARTESE 572 (606)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 99999999999988666544
No 59
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=6.3e-18 Score=186.92 Aligned_cols=69 Identities=48% Similarity=0.720 Sum_probs=64.9
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.|||++|||+++|+..|||+|||||||+|||||++.. +.|.+.|+.|+.||+|||||.||
T Consensus 16 rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd--------------------p~A~e~F~~in~AYEVLsDpekR 75 (336)
T KOG0713|consen 16 RDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD--------------------PNANEKFKEINAAYEVLSDPEKR 75 (336)
T ss_pred CCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--------------------HHHHHHHHHHHHHHHHhcCHHHH
Confidence 5999999999999999999999999999999999853 68999999999999999999999
Q ss_pred cccchhhhh
Q 039706 1064 SRYDLEEET 1072 (1166)
Q Consensus 1064 ~~YD~~~~~ 1072 (1166)
+.||.+++.
T Consensus 76 k~YD~~GEe 84 (336)
T KOG0713|consen 76 KHYDTYGEE 84 (336)
T ss_pred HHHHhhhHh
Confidence 999998853
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=3.5e-17 Score=184.27 Aligned_cols=263 Identities=20% Similarity=0.140 Sum_probs=112.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 613 NRAATRMALGRMRDALSDCMLAV-AI-DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekAL-el-dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
.+|.+++..|++++|+..+.+.+ .. .|++...|..+|.+...+++++.|+..|++++..++.+..+.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~----------- 81 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY----------- 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence 46999999999999999997655 44 488999999999999999999999999999999877643221
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
..+..+ ...+++++|+.++.++.+..+ ++..+.....++...++++++...++++....+.. .
T Consensus 82 ---------~~l~~l---~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~--- 144 (280)
T PF13429_consen 82 ---------ERLIQL---LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP-D--- 144 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T---
T ss_pred ---------cccccc---ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC-C---
Confidence 111111 246899999999999887664 46677778889999999999999999987543211 0
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
....+..+|.++...|+.++|+..|++++...| .+......++..+.
T Consensus 145 -------------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P--------------~~~~~~~~l~~~li 191 (280)
T PF13429_consen 145 -------------------SARFWLALAEIYEQLGDPDKALRDYRKALELDP--------------DDPDARNALAWLLI 191 (280)
T ss_dssp --------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T--------------T-HHHHHHHHHHHC
T ss_pred -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------CCHHHHHHHHHHHH
Confidence 012246689999999999999999999854433 34455666788899
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
..|++++|.+.+....... |.++.+|..+|.+|..+|++++|+.+|++++..+|+++..+..+|.++...|++++|
T Consensus 192 ~~~~~~~~~~~l~~~~~~~----~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA----PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH-----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred HCCChHHHHHHHHHHHHHC----cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999888888887765 667778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 039706 931 ASDFHRLIAL 940 (1166)
Q Consensus 931 i~~yekALeL 940 (1166)
...++++++.
T Consensus 268 ~~~~~~~~~~ 277 (280)
T PF13429_consen 268 LRLRRQALRL 277 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999999865
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=4.9e-16 Score=169.39 Aligned_cols=273 Identities=18% Similarity=0.106 Sum_probs=228.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHhC---C-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 616 ATRMALGRMRDALSDCMLAVAID---P-------DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeld---P-------~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
.+++...+.+.|-..+...++++ | .++.-..++|.||+++|-+.+|.+.++.+|+..|.-
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~---------- 256 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP---------- 256 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch----------
Confidence 35667778888888887777654 2 123334689999999999999999999999876651
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
+.+..+...+ ....+...|+..|.+.+...|.+...+...|+++..++++++|+++|+.++++.|.+
T Consensus 257 -----------dTfllLskvY--~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n 323 (478)
T KOG1129|consen 257 -----------DTFLLLSKVY--QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN 323 (478)
T ss_pred -----------hHHHHHHHHH--HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 1111122222 246788999999999999999999999999999999999999999999999999988
Q ss_pred CCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhh
Q 039706 766 SPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSA 845 (1166)
Q Consensus 766 ~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~l 845 (1166)
.++. ..+|.-|++-++.|-|+.+|++.+. ......+.+.++
T Consensus 324 vEai-------------------------Acia~~yfY~~~PE~AlryYRRiLq--------------mG~~speLf~Ni 364 (478)
T KOG1129|consen 324 VEAI-------------------------ACIAVGYFYDNNPEMALRYYRRILQ--------------MGAQSPELFCNI 364 (478)
T ss_pred ceee-------------------------eeeeeccccCCChHHHHHHHHHHHH--------------hcCCChHHHhhH
Confidence 7762 2266778999999999999999743 333446678889
Q ss_pred hHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q 039706 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR 925 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG 925 (1166)
|.+++-.++++-++..|++|+... ......+.+|||+|.+....|++.-|..+|+.||..|+++.+++.+||.+-...|
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G 443 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG 443 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcC
Confidence 999999999999999999999876 2234568899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhHHhhccC
Q 039706 926 DYDHAASDFHRLIALLTKQIEKSNQS 951 (1166)
Q Consensus 926 dyeeAi~~yekALeL~P~~~e~~~~~ 951 (1166)
+.++|...|..|-.+.|...+...+.
T Consensus 444 ~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 444 DILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred chHHHHHHHHHhhhhCccccccccce
Confidence 99999999999999999887765443
No 62
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=2e-17 Score=193.56 Aligned_cols=141 Identities=28% Similarity=0.426 Sum_probs=104.3
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~---------------------~~a~~~~~~i~~Ay~vL~d~~~r 60 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE---------------------KGAAEKFAQINEAYAVLSDAEKR 60 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------hhHHHHHHHHHHHHHHhcchhhh
Confidence 489999999999999999999999999999999752 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-------CCCCCCCceEEeeeeeeeccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-------NSAARGDIYSISFNLRIASNKRC 1136 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-------~~~~rG~~~~~~~~lsf~ea~~G 1136 (1166)
+.||.++..... +.+ +++.. ..+.|+ ....|..+|++.. ....+|.++.+.+.|+|+|+++|
T Consensus 61 ~~yd~~G~~~~~---~~~-~~~~~----~~~~~d---~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G 129 (371)
T PRK14292 61 AHYDRFGTAPGA---GMP-GGDPF----GGMGFD---PMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAG 129 (371)
T ss_pred hhHhhcCCcccc---ccc-CCccc----CccCCC---hHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCC
Confidence 999997753210 000 00000 001111 1122444444211 11246789999999999999999
Q ss_pred ccceeeceeeeee-eecceee
Q 039706 1137 YRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1137 ~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
+++.|++.+...| +|+|+|.
T Consensus 130 ~~~~v~~~r~~~C~~C~G~G~ 150 (371)
T PRK14292 130 EEVEVEVDRLTECEHCHGSRT 150 (371)
T ss_pred eEEEEEEEeeecCCCCccccc
Confidence 9999999988888 8877664
No 63
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.8e-17 Score=193.82 Aligned_cols=147 Identities=26% Similarity=0.364 Sum_probs=105.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++|++|||++|++||||+++. ..|+++|++|++||+||+||.+|
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~a~~~f~~i~~Ay~vL~~~~~R 61 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE---------------------PGAEDRFKEINRAYEVLSDPETR 61 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------cCHHHHHHHHHHHHHHHhchHHH
Confidence 489999999999999999999999999999999752 25788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----------CCCCCCCceEEeeeeeeec
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----------NSAARGDIYSISFNLRIAS 1132 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----------~~~~rG~~~~~~~~lsf~e 1132 (1166)
+.||.++.... . ++.+..+. .+ +. +....|..+|+++. ....+|.++.+.+.|+|+|
T Consensus 62 ~~yd~~g~~g~--~--~~~~~~~~-~~-----~~--~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee 129 (374)
T PRK14293 62 ARYDQFGEAGV--S--GAAGFPDM-GD-----MG--GFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFRE 129 (374)
T ss_pred HHHhhcccccc--c--cCCCcCCc-cc-----cc--chHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHH
Confidence 99999765211 0 01000000 00 00 00112333443210 1123578999999999999
Q ss_pred ccccccceeeceeeeee-eecceeeeeecccc
Q 039706 1133 NKRCYRPFVTIREFMAC-ACQWRYQIVESQTE 1163 (1166)
Q Consensus 1133 a~~G~~K~i~~~~~~~C-~C~G~~q~~~~~~~ 1163 (1166)
++.|+++.|++.+.+.| +|+|+|......++
T Consensus 130 ~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~ 161 (374)
T PRK14293 130 AIFGGEKEIRIPHLETCETCRGSGAKPGTGPT 161 (374)
T ss_pred HhCCceEEEEeeccccCCCCCCcCCCCCCCCe
Confidence 99999999999998888 88877654433333
No 64
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.70 E-value=7.5e-15 Score=161.07 Aligned_cols=276 Identities=15% Similarity=0.150 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
...++.+|..++..|++..|+..|..|++.||++..+++++|.+|+.+|+-..|+..+.++|++.|+...++
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR-------- 109 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR-------- 109 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH--------
Confidence 345788999999999999999999999999999999999999999999999999999999999999943221
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChH---HHH------------HHHHHHHHHccCHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE---KLL------------EMKAEALFMLRKYEEVI 752 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~---~al------------~~lA~~y~~lGdyeeAi 752 (1166)
+.+... ..++|.+++|..-|+.+|.-+|.+. +++ ......++..|++..||
T Consensus 110 -----------iQRg~v---llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 110 -----------IQRGVV---LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred -----------HHhchh---hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 111112 2358999999999999999988432 222 22333455568999999
Q ss_pred HHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 753 QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 753 ~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
.++..+|++.|=+.. .+...+.+|...|+...|+..++.+.....
T Consensus 176 ~~i~~llEi~~Wda~-------------------------l~~~Rakc~i~~~e~k~AI~Dlk~askLs~---------- 220 (504)
T KOG0624|consen 176 EMITHLLEIQPWDAS-------------------------LRQARAKCYIAEGEPKKAIHDLKQASKLSQ---------- 220 (504)
T ss_pred HHHHHHHhcCcchhH-------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHhccc----------
Confidence 999999998763211 135688999999999999999988643222
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHH------------HHHHHHHHhhchhHHHHHH
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFC------------NRAAAYKALRHITDAIADC 900 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~------------nlA~ay~~lGq~eeAi~~l 900 (1166)
...+.++.+..+++..|+.+.++...+++|+++ |+.-.||- .-+......++|.++++..
T Consensus 221 ----DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld----pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~g 292 (504)
T KOG0624|consen 221 ----DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD----PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAG 292 (504)
T ss_pred ----cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC----cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 224556677899999999999999999999999 44433332 1233455678899999999
Q ss_pred HHHHHhCCChHHH----HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 901 NLAIALDGNYLKA----ISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 901 ekALeldP~~~~A----~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+++++.+|..+.. ...+-.||..-+++.+|++...++|.++|++.+..
T Consensus 293 e~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 293 EKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred HHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 9999999985543 44467889999999999999999999999987754
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3e-15 Score=173.77 Aligned_cols=274 Identities=15% Similarity=0.102 Sum_probs=229.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQV-RAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~-~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
+-.+|..++...+|.+.+..++..++.+|-+..++- .+| |+..+|+..+-...-.+.+...|+.+..|.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~--------- 316 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWF--------- 316 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchh---------
Confidence 456788888999999999999999999998877664 455 888888887777777777788888544322
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
..+.++ .-.+.+.+|..+|.++..++|....+|...|..+...+..++|+.+|..|-++-|....+
T Consensus 317 -----------aVg~YY--l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP- 382 (611)
T KOG1173|consen 317 -----------AVGCYY--LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP- 382 (611)
T ss_pred -----------hHHHHH--HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch-
Confidence 222222 236999999999999999999999999999999999999999999999999998765432
Q ss_pred cccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 770 DANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 770 ~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
...+|.-|.+.++++-|...|.+|....|. +...+..+|.++
T Consensus 383 ------------------------~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~--------------Dplv~~Elgvva 424 (611)
T KOG1173|consen 383 ------------------------SLYLGMEYMRTNNLKLAEKFFKQALAIAPS--------------DPLVLHELGVVA 424 (611)
T ss_pred ------------------------HHHHHHHHHHhccHHHHHHHHHHHHhcCCC--------------cchhhhhhhhee
Confidence 345899999999999999999998554443 456677889999
Q ss_pred HHcCChHHHHHHHHHHHhcccc---CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 850 FQAGRHSEAVEHYTAALSCTVE---SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e---~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
+..+.|.+|+.+|+.++...+. ..+.-...+.|+|.+|.+++.+++||.+++++|.+.|.++.++..+|.+|..+|+
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 9999999999999999954321 1123456789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHH
Q 039706 927 YDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 927 yeeAi~~yekALeL~P~~~e 946 (1166)
++.|+..|.++|.+.|.+.-
T Consensus 505 ld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 505 LDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred hHHHHHHHHHHHhcCCccHH
Confidence 99999999999999998843
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=9.7e-16 Score=178.63 Aligned_cols=263 Identities=16% Similarity=0.108 Sum_probs=193.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
|..|..+++.|...+|+-.|+.|+..+|.+++||..||.++...++-..|+..+++|++++|++
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N---------------- 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN---------------- 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc----------------
Confidence 3469999999999999999999999999999999999999999998888888888888777764
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
.+++..||..|...|.-.+|+.++.+.|...|........
T Consensus 353 ----------------------------------------leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a 392 (579)
T KOG1125|consen 353 ----------------------------------------LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSA 392 (579)
T ss_pred ----------------------------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcccc
Confidence 3445556666666666677777777776665543211000
Q ss_pred cCcccccCcc---c-hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 772 NGQSMELDSS---E-STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 772 ~g~~l~ld~~---~-~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
-...+.. . +.... +..-.++|-.+.. ..+...+......+|.
T Consensus 393 ---~~~~~~~~~~s~~~~~~-------------------l~~i~~~fLeaa~------------~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 393 ---GENEDFENTKSFLDSSH-------------------LAHIQELFLEAAR------------QLPTKIDPDVQSGLGV 438 (579)
T ss_pred ---CccccccCCcCCCCHHH-------------------HHHHHHHHHHHHH------------hCCCCCChhHHhhhHH
Confidence 0000000 0 00000 1111122222111 1111234556677899
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
+|+..++|++|+.+|+.||... |.+..+|+.||.++..-.+.++||..|.+||++.|.++.+++++|.+|+.+|.|
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~----Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVK----PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcC----CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence 9999999999999999999988 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhh
Q 039706 928 DHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRL 971 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~L 971 (1166)
.+|+.+|-.||.+.++......... ....+.+-||.+-..+
T Consensus 515 kEA~~hlL~AL~mq~ks~~~~~~~~---~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 515 KEAVKHLLEALSMQRKSRNHNKAPM---ASENIWQTLRLALSAM 555 (579)
T ss_pred HHHHHHHHHHHHhhhcccccccCCc---chHHHHHHHHHHHHHc
Confidence 9999999999999887543221111 1245666666555444
No 67
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.9e-14 Score=166.89 Aligned_cols=314 Identities=17% Similarity=0.083 Sum_probs=223.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhH
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKA 692 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~ 692 (1166)
..|.+.+..|+|+.|+..|..||.++|.+.-.|.++..+|..+|+|++|++.-.+++++.|+=+ .
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~-------k-------- 71 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWA-------K-------- 71 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchh-------h--------
Confidence 4688999999999999999999999999999999999999999999999999999999999821 1
Q ss_pred HhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc---------------------CHHHH
Q 039706 693 QKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR---------------------KYEEV 751 (1166)
Q Consensus 693 ~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG---------------------dyeeA 751 (1166)
.+.+.+..+ ...|+|++|+..|.+.|+.+|.+..++..++.++.... ++-..
T Consensus 72 -----gy~r~Gaa~--~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~ 144 (539)
T KOG0548|consen 72 -----GYSRKGAAL--FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLS 144 (539)
T ss_pred -----HHHHhHHHH--HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhc
Confidence 122222222 24799999999999999999999999999999883321 11122
Q ss_pred HHHHHHHHHhccCCCCCccccCc----------cc-----------------ccCc-------cchhh------hhhhhh
Q 039706 752 IQLCEQTFHFAEKNSPPLDANGQ----------SM-----------------ELDS-------SESTK------HVSFRL 791 (1166)
Q Consensus 752 i~~lekALel~p~n~~a~~~~g~----------~l-----------------~ld~-------~~~~~------~~~~~~ 791 (1166)
-..|...++..+.++..+..+.. ++ ...+ ..... ......
T Consensus 145 ~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a 224 (539)
T KOG0548|consen 145 DPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKA 224 (539)
T ss_pred cHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhh
Confidence 23444445544444433211110 00 0000 00000 001112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh--------------hhhhhh-----------ccchH-HHHHHhhh
Q 039706 792 WRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML--------------ESLIPL-----------AGTVR-ELLCRKSA 845 (1166)
Q Consensus 792 wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l--------------e~a~~L-----------~~~~~-~a~~l~~l 845 (1166)
.....+|...+...+++.|+++|..++........ ..++.. ..... .+..+..+
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 33456888889999999999999987764411100 000000 00000 11223346
Q ss_pred hHHHHHcCChHHHHHHHHHHHhccc----------------------cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 039706 846 GNEAFQAGRHSEAVEHYTAALSCTV----------------------ESHPFAAICFCNRAAAYKALRHITDAIADCNLA 903 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kALel~~----------------------e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekA 903 (1166)
|+.|.+.++|+.|+.+|.++|.... -..|.-+.-....|..++..|+|..|+..|.+|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8899999999999999999987441 112333445556789999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 904 IALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 904 LeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|..+|+++.+|.+||.||.+++.+..|+.+.+.+++++|+.....
T Consensus 385 Ikr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy 429 (539)
T KOG0548|consen 385 IKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAY 429 (539)
T ss_pred HhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHH
Confidence 999999999999999999999999999999999999988876654
No 68
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.70 E-value=1.6e-14 Score=182.70 Aligned_cols=369 Identities=12% Similarity=-0.048 Sum_probs=234.8
Q ss_pred cccCCCCchhHHHhhhHHhhCcchhHH-------------------HHHHHHHhchHHHHHHH--HHHHHHcCChHHHHH
Q 039706 571 SSRLKGDRNSEVDRGQEIKQEPNLASA-------------------ETIAAQEACEKWRLSNR--AATRMALGRMRDALS 629 (1166)
Q Consensus 571 ~~l~~~~~~a~~~~~~aik~ep~~A~a-------------------~~~aAIe~~e~~ay~nr--A~ayl~lG~y~eAI~ 629 (1166)
.....++..|+..+.++++.+|++..+ ++..++++.+.+++..+ |.+|..+|+|++|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444566789999999999999997421 12222323333455555 779999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHH--------
Q 039706 630 DCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQR-------- 701 (1166)
Q Consensus 630 ~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~-------- 701 (1166)
.|+++++++|+++.++..++.+|...++.++|+..+++++..+|.+... ..+..++....+...+...+..
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999988885433 2222222111111000000000
Q ss_pred ------HHHH-------------HH---------------------hh---------cCC---CHHHHHHHHHHHHHh--
Q 039706 702 ------SAQL-------------LQ---------------------NK---------TSN---DAEIALGVIDEALFI-- 727 (1166)
Q Consensus 702 ------a~~~-------------l~---------------------~~---------~~g---d~eeALe~lekALel-- 727 (1166)
.... +. .. ... -.+.|+..+++.+..
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 0000 00 00 000 123445555555542
Q ss_pred -CCCh----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc-------------------ccCcccccCccch
Q 039706 728 -SSYS----EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD-------------------ANGQSMELDSSES 783 (1166)
Q Consensus 728 -~P~~----~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~-------------------~~g~~l~ld~~~~ 783 (1166)
.|.. ..++.-+-.++..++++.+++..|+.+....... +.+. .+..++..++...
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 2211 1222333334444555555555554433221111 1000 0000000000000
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh-hhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 784 TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML-ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 784 ~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l-e~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
. ....+.....|..+|...+++++|..++++.....|-... -....-.+++.-......++..+.-.|++.+|.+.+
T Consensus 362 ~--~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 362 R--NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred C--CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 0000000123566788899999999999997653331100 000011233444556666789999999999999999
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 863 TAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
++.+... |.+..++..+|.++...|.+.+|+..++.++.++|.+..+...+|.+++.++++.+|....+.+++..|
T Consensus 440 e~l~~~a----P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 440 EDLSSTA----PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHhC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 9999988 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHh
Q 039706 943 KQIEK 947 (1166)
Q Consensus 943 ~~~e~ 947 (1166)
++...
T Consensus 516 e~~~~ 520 (822)
T PRK14574 516 EDIPS 520 (822)
T ss_pred CchhH
Confidence 98753
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.68 E-value=5.4e-15 Score=168.36 Aligned_cols=217 Identities=18% Similarity=0.094 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
+|+++|.+|..+|++.+|+.+|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------------------ 127 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------------------ 127 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------
Confidence 35666666666666666666666666666666666666666666666666666655555554
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
+|.+..++..+|.+++..|++++|+..++++++++|+++.
T Consensus 128 --------------------------------------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-- 167 (296)
T PRK11189 128 --------------------------------------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-- 167 (296)
T ss_pred --------------------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--
Confidence 4555566677777777777777777777777777665421
Q ss_pred cccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 770 DANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 770 ~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
..+| ..++...+++++|+..+.++....+. ..+ ..+..+
T Consensus 168 -------------------~~~~-----~~l~~~~~~~~~A~~~l~~~~~~~~~--------------~~~---~~~~~~ 206 (296)
T PRK11189 168 -------------------RALW-----LYLAESKLDPKQAKENLKQRYEKLDK--------------EQW---GWNIVE 206 (296)
T ss_pred -------------------HHHH-----HHHHHccCCHHHHHHHHHHHHhhCCc--------------ccc---HHHHHH
Confidence 0111 11233456777777777654211100 000 013344
Q ss_pred HHcCChHHH--HHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHhh
Q 039706 850 FQAGRHSEA--VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG-NYLKAISRRATLYEMIR 925 (1166)
Q Consensus 850 ~~~G~yeEA--ie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP-~~~~A~~~LA~ay~~lG 925 (1166)
+..|++.++ ++.+.+++...+...|..+.+|+++|.+|..+|++++|+.+|++|++++| ++++..+.+..+....+
T Consensus 207 ~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 207 FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 445555433 22233222222222266778999999999999999999999999999996 77777766666555443
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.68 E-value=9.7e-15 Score=180.02 Aligned_cols=239 Identities=11% Similarity=-0.038 Sum_probs=189.2
Q ss_pred HHHHHHHHHc---CChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 039706 646 VRAANCHLAL---GEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVID 722 (1166)
Q Consensus 646 ~~LA~lyl~l---Gd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~le 722 (1166)
+..|..++.. +.+++|+..|+++++++|++...+..+..++..+.... .....+++++|+..++
T Consensus 262 ~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g-------------~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 262 YLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMG-------------IFDKQNAMIKAKEHAI 328 (553)
T ss_pred HHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC-------------CcccchHHHHHHHHHH
Confidence 3445444332 35689999999999999997655544433222111100 0113567899999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHH
Q 039706 723 EALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYF 802 (1166)
Q Consensus 723 kALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~ 802 (1166)
++++++|+++.++..+|.++..+|++++|+..|+++++++|++..+ +..+|.+|.
T Consensus 329 ~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-------------------------~~~lg~~l~ 383 (553)
T PRK12370 329 KATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADI-------------------------KYYYGWNLF 383 (553)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-------------------------HHHHHHHHH
Confidence 9999999999999999999999999999999999999999976543 456899999
Q ss_pred HcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHH
Q 039706 803 TLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCN 882 (1166)
Q Consensus 803 ~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~n 882 (1166)
..|++++|+..+++++..+|.. ...+..++.+++..|++++|+..+++++... .|..+.++.+
T Consensus 384 ~~G~~~eAi~~~~~Al~l~P~~--------------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~---~p~~~~~~~~ 446 (553)
T PRK12370 384 MAGQLEEALQTINECLKLDPTR--------------AAAGITKLWITYYHTGIDDAIRLGDELRSQH---LQDNPILLSM 446 (553)
T ss_pred HCCCHHHHHHHHHHHHhcCCCC--------------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc---cccCHHHHHH
Confidence 9999999999999987766542 1122234556778999999999999998764 2667788999
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 883 RAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 883 lA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
+|.+|..+|++++|+..+.+++...|....++..++.+|..+|+ +|...++++++..
T Consensus 447 la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998884 7888888866543
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=1.6e-14 Score=153.69 Aligned_cols=202 Identities=21% Similarity=0.126 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+++++|.+|+..|++++|+..+++++..+|.+..++..+|.+|..+|++++|+..|++++++.|.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-------------- 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-------------- 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------------
Confidence 446678888888888888888888888888888888888888888888888888888777665544
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
+..++..+|.++..+|++++|+..+++++...+.. .
T Consensus 98 ------------------------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~- 133 (234)
T TIGR02521 98 ------------------------------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-Q- 133 (234)
T ss_pred ------------------------------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-c-
Confidence 33456667788888888888888888887532100 0
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
....+..+|.+
T Consensus 134 ---------------------------------------------------------------------~~~~~~~l~~~ 144 (234)
T TIGR02521 134 ---------------------------------------------------------------------PARSLENAGLC 144 (234)
T ss_pred ---------------------------------------------------------------------chHHHHHHHHH
Confidence 00112224666
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHH
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYD 928 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdye 928 (1166)
+...|++++|+..|.+++... |.....+..+|.++...|++++|+..+++++.+.|..+..+..++.++...|+++
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQID----PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVA 220 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhC----cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 777777777778887777766 5666778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 039706 929 HAASDFHRLIALL 941 (1166)
Q Consensus 929 eAi~~yekALeL~ 941 (1166)
+|....+.+....
T Consensus 221 ~a~~~~~~~~~~~ 233 (234)
T TIGR02521 221 AAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHhhC
Confidence 8888877766553
No 72
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=2.3e-13 Score=172.44 Aligned_cols=360 Identities=12% Similarity=-0.021 Sum_probs=225.5
Q ss_pred CchhHHHhhhHHhhCcchhHHHHHHHHHhchHH--HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039706 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKW--RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA 654 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~--ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~ 654 (1166)
|..+++.+++- ++.-|...+..++...|.. +.+.++.++...|++++|+..|++++.-+|....++..+|.+|..
T Consensus 38 y~~aii~~r~G---d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 38 YDSLIIRARAG---DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 34445444433 2345667777777766664 345888889999999999999999994444455555556889999
Q ss_pred cCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHH-----------HHHHHhhcCCCHHHHHHHHHH
Q 039706 655 LGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRS-----------AQLLQNKTSNDAEIALGVIDE 723 (1166)
Q Consensus 655 lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a-----------~~~l~~~~~gd~eeALe~lek 723 (1166)
+|++++|++.|+++++.+|+++..+..+..++....+..++......+ ...+.....+++.+|+..|++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999999999999998776665555444444444433322221 111112225667669999999
Q ss_pred HHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHH----------------------------------------------
Q 039706 724 ALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQ---------------------------------------------- 757 (1166)
Q Consensus 724 ALel~P~~~~al~~lA~~y~~lGdyeeAi~~lek---------------------------------------------- 757 (1166)
+++..|.+.+++..+..++...|-...|++++.+
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 9999999999988888888888776666554442
Q ss_pred --HHHhccCCCCCcccc--------Cccccc-Cccchhh--------hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039706 758 --TFHFAEKNSPPLDAN--------GQSMEL-DSSESTK--------HVSFRLWRCCLIFKSYFTLGRLEEAIAALERHE 818 (1166)
Q Consensus 758 --ALel~p~n~~a~~~~--------g~~l~l-d~~~~~~--------~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl 818 (1166)
++...+..+++...+ ..+... ....+.. ...+..+.....|.+|+.+++.++|+.+|++++
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 111111111100000 000000 0000000 000001111224455555555555555555543
Q ss_pred cCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc-----------cCCchhHHHHHHHHHHH
Q 039706 819 SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV-----------ESHPFAAICFCNRAAAY 887 (1166)
Q Consensus 819 ~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~-----------e~~p~~a~a~~nlA~ay 887 (1166)
...+.. ...+........+-.+|...++|++|..++++.....| ..+|....+...++.++
T Consensus 355 ~~~~~~--------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 355 YSDGKT--------FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred hccccc--------cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 322210 01111222234456678888888888888888877443 23455667777788888
Q ss_pred HHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 888 KALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 888 ~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
...|++.+|++.+++.+...|.+...+..+|.++...|.+.+|...++.++.+.|++...
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 888888888888888888888888888888888888888888888888888887776553
No 73
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=6.1e-14 Score=166.80 Aligned_cols=288 Identities=10% Similarity=0.006 Sum_probs=208.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
...+|...+..|+|..|...+.++.+..|+...+++..|.++..+|+++.|..+|.++.+..|+......
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~---------- 156 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE---------- 156 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH----------
Confidence 3668899999999999999999999999999999999999999999999999999999998887422110
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
...+.. ....+++++|+..++++++..|+++.++..++.++...|+|++|+..+.+.++..........
T Consensus 157 --------~~~a~l---~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~ 225 (409)
T TIGR00540 157 --------IARTRI---LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA 225 (409)
T ss_pred --------HHHHHH---HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 000111 224799999999999999999999999999999999999999999999999977433222110
Q ss_pred ------ccCcc---------------cccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 771 ------ANGQS---------------MELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 771 ------~~g~~---------------l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
..+.+ ....+.... .....+..++..+...|++++|+..+++++...++.....
T Consensus 226 ~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~----~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~- 300 (409)
T TIGR00540 226 DLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRR----HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS- 300 (409)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHh----CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-
Confidence 00000 000110000 0112234577788888888888888888766544421000
Q ss_pred hhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhH--HHHHHHHHHHHHhhchhHHHHHHH--HHHH
Q 039706 830 IPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA--ICFCNRAAAYKALRHITDAIADCN--LAIA 905 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a--~a~~nlA~ay~~lGq~eeAi~~le--kALe 905 (1166)
...+ ........++...+++.++++++.. |.++ .++..+|.++++.|+|++|.++|+ .+++
T Consensus 301 ---------~~~l--~~~~~l~~~~~~~~~~~~e~~lk~~----p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 301 ---------LPLC--LPIPRLKPEDNEKLEKLIEKQAKNV----DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred ---------hHHH--HHhhhcCCCChHHHHHHHHHHHHhC----CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 0011 1222334567777888888888776 6777 777788888888888888888888 5777
Q ss_pred hCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 906 ldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
..|+... +..+|.++..+|+.++|..+|++++.+
T Consensus 366 ~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 366 EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7787655 448888888888888888888887755
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.5e-14 Score=156.95 Aligned_cols=298 Identities=12% Similarity=0.018 Sum_probs=227.1
Q ss_pred hchHHHHHH-HHHHHHHcCChHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 605 ACEKWRLSN-RAATRMALGRMRD--ALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 605 ~~e~~ay~n-rA~ayl~lG~y~e--AI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
...+|.+.. .+.+.+..++... +..++-.-...-|++...+..+|.|++..|++.+|+..|++++-++|.+......
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 444555432 3445555555444 4555555666779999999999999999999999999999999999987666555
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHH------------HhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHH
Q 039706 682 AVEASDGLQKAQKVSECMQRSAQLL------------QNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYE 749 (1166)
Q Consensus 682 l~Ea~~~L~k~~~~~e~~~~a~~~l------------~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdye 749 (1166)
+.-+...-..+..+..+...+.... ..+..+++..|+.+.+++|..+|.+..++.++|.+++.+++.+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchH
Confidence 5444443333333332222221111 1234789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 750 EVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 750 eAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
+|+-.|+.+..+.|-. +..|.-+..+|...|++.+|+...+.+...-
T Consensus 352 ~A~IaFR~Aq~Lap~r-------------------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-------- 398 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPYR-------------------------LEIYRGLFHSYLAQKRFKEANALANWTIRLF-------- 398 (564)
T ss_pred HHHHHHHHHHhcchhh-------------------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------
Confidence 9999999999987743 2235567889999999999998887753211
Q ss_pred hhhccchHHHHHHhhhh-HH-HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 830 IPLAGTVRELLCRKSAG-NE-AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG-~~-~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
...+..+...| .+ ++.----++|...|+++|.+. |....+-..+|.++...|.+.+++..++++|...
T Consensus 399 ------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~----P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 399 ------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN----PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred ------hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC----CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 12233333333 22 233334578999999999998 8888899999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|+ ...+..||.++...+.+++|+.+|..|+.++|++..
T Consensus 469 ~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 469 PD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred cc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 86 457888999999999999999999999999998743
No 75
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=5.6e-16 Score=175.48 Aligned_cols=138 Identities=27% Similarity=0.371 Sum_probs=95.2
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||+++++.++||+|||++|++||||+++. ..|+++|++|++||++|+||.+|
T Consensus 4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~~L~d~~kr 62 (291)
T PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS---------------------PGAEEKFKEINEAYTVLSDPEKR 62 (291)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHHhcCHHHH
Confidence 499999999999999999999999999999999752 36888999999999999999999
Q ss_pred cccchhhhhhhhhc-cCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-------------CCCCCCCceEEeeeee
Q 039706 1064 SRYDLEEETRNTQK-KQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-------------NSAARGDIYSISFNLR 1129 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~-~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-------------~~~~rG~~~~~~~~ls 1129 (1166)
+.||.++....... .+...+.++...+ ..+.++ .....|..+|++++ ...++|.++.+.+.|+
T Consensus 63 ~~yD~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~is 139 (291)
T PRK14299 63 RIYDTYGTTAASAGWQGPPPGPPGGGDF-SGFNVG--DFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLT 139 (291)
T ss_pred HHHHhcCCccccccccCCCCCCCCCCCc-cccCcC--CHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEec
Confidence 99999775311000 0000000000000 001111 11122444444211 1234688999999999
Q ss_pred eecccccccceeecee
Q 039706 1130 IASNKRCYRPFVTIRE 1145 (1166)
Q Consensus 1130 f~ea~~G~~K~i~~~~ 1145 (1166)
|+|++.|+++.|++..
T Consensus 140 L~ea~~G~~~~i~l~g 155 (291)
T PRK14299 140 LEEAYRGGEKVVEVAG 155 (291)
T ss_pred HHHHhCCCeEEEeeCC
Confidence 9999999999997753
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.63 E-value=9.9e-14 Score=158.04 Aligned_cols=80 Identities=11% Similarity=-0.011 Sum_probs=71.5
Q ss_pred HHHHHHHHHhc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 039706 596 SAETIAAQEAC--EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGS 673 (1166)
Q Consensus 596 ~a~~~aAIe~~--e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P 673 (1166)
...+..|+... .+.+|+++|.+|..+|++++|+..|+++++++|++..+|..+|.++...|++++|++.|+++++++|
T Consensus 84 ~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 84 RNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34445555544 4588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc
Q 039706 674 DV 675 (1166)
Q Consensus 674 ~n 675 (1166)
++
T Consensus 164 ~~ 165 (296)
T PRK11189 164 ND 165 (296)
T ss_pred CC
Confidence 85
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.5e-14 Score=164.11 Aligned_cols=253 Identities=13% Similarity=0.048 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
+.-..+| +++.+|+..+=...-.+.+...|+.+-.|+..|.-|+..|++.+|..+|.++..++|....+|..+
T Consensus 280 ~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~f------ 352 (611)
T KOG1173|consen 280 CLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAF------ 352 (611)
T ss_pred hHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHH------
Confidence 4445566 999999999888888899999999999999999999999999999999999999999866554332
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
+..+. ..++.++|+.+|..|-++-|.+-.-.+.+|.-|.+++.++-|...+.+|+.+.|.++-.
T Consensus 353 --------------ghsfa--~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv 416 (611)
T KOG1173|consen 353 --------------GHSFA--GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV 416 (611)
T ss_pred --------------hHHhh--hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh
Confidence 22222 36889999999999999999888888889999999999999999999999999987543
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
+..+|.+.+..+.|.+|+.+|+.++..-... +...+.-...+.++|.+
T Consensus 417 -------------------------~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~-------~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 417 -------------------------LHELGVVAYTYEEYPEALKYFQKALEVIKSV-------LNEKIFWEPTLNNLGHA 464 (611)
T ss_pred -------------------------hhhhhheeehHhhhHHHHHHHHHHHHHhhhc-------cccccchhHHHHhHHHH
Confidence 3558889999999999999999985211110 11111234457789999
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
+.+.++|++||.+|+++|.+. |.++.++..+|.+|..+|+++.|+++|.+||.+.|++.-+--.|+.+
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~----~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLS----PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcC----CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 999999999999999999998 99999999999999999999999999999999999997666555533
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.62 E-value=1e-13 Score=165.65 Aligned_cols=264 Identities=17% Similarity=0.129 Sum_probs=197.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAI--------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALel--------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
..++|..|...|+|++|+..|++|+++ .|.-......+|.+|..++++.+|+..|++|+.+--.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~-------- 273 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE-------- 273 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH--------
Confidence 355788888888888888888888877 4444445555777777777777777777777653100
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 039706 683 VEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA 762 (1166)
Q Consensus 683 ~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~ 762 (1166)
..| ..+|....++.++|.+|...|++++|..+|++++++.
T Consensus 274 ---------------------------~~G-------------~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 274 ---------------------------VFG-------------EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred ---------------------------hcC-------------CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 001 1234456788899999999999999999999999997
Q ss_pred cCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHH
Q 039706 763 EKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCR 842 (1166)
Q Consensus 763 p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l 842 (1166)
...... ....+.. .+..++.++...+++++|+.++++++..-... .-..++..+..+
T Consensus 314 ~~~~~~----------~~~~v~~-------~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~------~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 314 EKLLGA----------SHPEVAA-------QLSELAAILQSMNEYEEAKKLLQKALKIYLDA------PGEDNVNLAKIY 370 (508)
T ss_pred HHhhcc----------ChHHHHH-------HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh------ccccchHHHHHH
Confidence 652211 2222222 24678899999999999999999974421100 011223456677
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC-------CChH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD-------GNYL 911 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld-------P~~~ 911 (1166)
.++|..|+..|+|.+|.+.|++||.+.. .........+.++|..|.+++++.+|...|.+++.+. |+-.
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 8899999999999999999999998763 3345667888999999999999999999999998773 5556
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
..|.+||.+|..+|+|++|+++.++++.......
T Consensus 451 ~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 451 YTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 7899999999999999999999999997654443
No 79
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=3.1e-13 Score=160.19 Aligned_cols=287 Identities=9% Similarity=0.007 Sum_probs=210.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQ-VRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~-~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
++..|...+..|+|++|.....++-...+ ++..+ ...+.+..+.|+++.|..+|.++.+..|++......
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l-------- 157 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEI-------- 157 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHH--------
Confidence 46688888899999999977777655433 34444 444666699999999999999999998885321110
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
..+.. +...|++++|+..++++++..|.++.++..++.+|...|+|++|+..+.++.+.........
T Consensus 158 ----------~~a~l---~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~ 224 (398)
T PRK10747 158 ----------TRVRI---QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHR 224 (398)
T ss_pred ----------HHHHH---HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHH
Confidence 11111 23489999999999999999999999999999999999999999999988887655432211
Q ss_pred ccc-Ccc----c----cc-Cccchh-------hhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 770 DAN-GQS----M----EL-DSSEST-------KHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 770 ~~~-g~~----l----~l-d~~~~~-------~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
..+ ..+ + .. +..... ............++..+...|+.++|...+++++...++.
T Consensus 225 ~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~-------- 296 (398)
T PRK10747 225 AMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE-------- 296 (398)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--------
Confidence 100 000 0 00 000000 0000011223457889999999999999999975533331
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~ 912 (1166)
.... .......++.++|++.+++.++.. |.++..+..+|.++...++|++|..+|++++++.|+..
T Consensus 297 -------~l~~--l~~~l~~~~~~~al~~~e~~lk~~----P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~- 362 (398)
T PRK10747 297 -------RLVL--LIPRLKTNNPEQLEKVLRQQIKQH----GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY- 362 (398)
T ss_pred -------HHHH--HHhhccCCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-
Confidence 1111 112234589999999999999877 89999999999999999999999999999999999865
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
.+..++.++..+|+.++|..+|++++.+.
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 46679999999999999999999998764
No 80
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=3.4e-13 Score=151.67 Aligned_cols=272 Identities=15% Similarity=0.067 Sum_probs=220.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDF-LRVQVRAANCHLALG--EIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~-~~A~~~LA~lyl~lG--d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+.|-.|++.|+++.|++.+.-.-..+..- ..+-.+|..+++.+| ++..|.++...++.++.-++.+..
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~-------- 494 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT-------- 494 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh--------
Confidence 678899999999999999886554444333 234556666666643 788999999998887654432110
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
.... ..+..|++++|++.|.+||.-+..+.++++++|..+..+|+.++|+.+|-++-.+-.++.+
T Consensus 495 -----------nkgn---~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e- 559 (840)
T KOG2003|consen 495 -----------NKGN---IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE- 559 (840)
T ss_pred -----------cCCc---eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH-
Confidence 0000 1234799999999999999999999999999999999999999999999887655443322
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
.+..++.+|..+.+..+|+++|.++... .+.+...+..+|.+
T Consensus 560 ------------------------vl~qianiye~led~aqaie~~~q~~sl--------------ip~dp~ilskl~dl 601 (840)
T KOG2003|consen 560 ------------------------VLVQIANIYELLEDPAQAIELLMQANSL--------------IPNDPAILSKLADL 601 (840)
T ss_pred ------------------------HHHHHHHHHHHhhCHHHHHHHHHHhccc--------------CCCCHHHHHHHHHH
Confidence 2466899999999999999999986322 22334556667999
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHH
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYD 928 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdye 928 (1166)
|-+.|+-.+|.+++-.....- |.+..+.-++|..|....-+++||.+|++|--+.|+..+-.+.+|.|+.+.|+|+
T Consensus 602 ydqegdksqafq~~ydsyryf----p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRYF----PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred hhcccchhhhhhhhhhccccc----CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 999999999999988887766 8888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHhh
Q 039706 929 HAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 929 eAi~~yekALeL~P~~~e~~ 948 (1166)
.|...|+..-..+|++++..
T Consensus 678 ka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred HHHHHHHHHHHhCccchHHH
Confidence 99999999999999987743
No 81
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=1.2e-12 Score=159.21 Aligned_cols=333 Identities=17% Similarity=0.128 Sum_probs=223.7
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
++..|+.-....|+++|.+..+++. +|.+|-.+|+..+|+...-.|-.++|++...|..+|....++
T Consensus 154 ~~eeA~~i~~EvIkqdp~~~~ay~t-------------L~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQDPRNPIAYYT-------------LGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred CHHHHHHHHHHHHHhCccchhhHHH-------------HHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 3456666666777777776665554 788888888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHH----------------HHHHH-hhcCCCHHHHH
Q 039706 656 GEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRS----------------AQLLQ-NKTSNDAEIAL 718 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a----------------~~~l~-~~~~gd~eeAL 718 (1166)
|.+.+|.-+|.+||+.+|.++.-......++...+....+...+..+ ..... ....++-+.|+
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888888888888888876544333333333333332222221111 11011 12345558888
Q ss_pred HHHHHHHHhC--CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccCCCCC-----------------------ccc
Q 039706 719 GVIDEALFIS--SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF--AEKNSPP-----------------------LDA 771 (1166)
Q Consensus 719 e~lekALel~--P~~~~al~~lA~~y~~lGdyeeAi~~lekALel--~p~n~~a-----------------------~~~ 771 (1166)
..++.++... -....-+..++.+++....++.|+......... .++..+. +..
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 8888888733 233456678899999999999998877665541 1110000 000
Q ss_pred ---cCcccccCccchhh---------h--hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchH
Q 039706 772 ---NGQSMELDSSESTK---------H--VSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVR 837 (1166)
Q Consensus 772 ---~g~~l~ld~~~~~~---------~--~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~ 837 (1166)
.--++.++...... . .......+..++.+|...|++.+|+.+|..+..... ..
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-------------~~ 447 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG-------------YQ 447 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-------------cc
Confidence 00001111111110 0 111233456789999999999999999988643322 22
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC--------
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN-------- 909 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~-------- 909 (1166)
.+..|+.+|.+|..++.|++|+++|.++|.++ |.+..+...++.+|.++|+.++|++.++..+.-|+.
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~----p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILA----PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 36678889999999999999999999999998 999999999999999999999999999987633322
Q ss_pred -hHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 910 -YLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 910 -~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
.....+.+..+|...|+.++=+..-...+
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 24567788999999999998544443333
No 82
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.2e-16 Score=172.39 Aligned_cols=141 Identities=27% Similarity=0.384 Sum_probs=105.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++||+.++++..|||.||++||++||||.+.. +.|.++|++|.+||+||+|++||
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~---------------------~~a~~kF~eI~~AYEiLsd~eKR 101 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD---------------------KEASKKFKEISEAYEILSDEEKR 101 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC---------------------cchhhHHHHHHHHHHHhcCHHHH
Confidence 389999999999999999999999999999999863 37999999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccCCCCCCCCceEEeeeeeeecccccccceeec
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYDNSAARGDIYSISFNLRIASNKRCYRPFVTI 1143 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~rG~~~~~~~~lsf~ea~~G~~K~i~~ 1143 (1166)
+.||..+... .++.+ + .+ ...+...+++-.+-...+.+..+...+.|+||++|+++.+++
T Consensus 102 ~~YD~~~~~~-----~~~~~--g-------~~------~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~ 161 (288)
T KOG0715|consen 102 QEYDVYGLEQ-----HGEFG--G-------NP------FDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISF 161 (288)
T ss_pred HHHHHhhhhc-----ccccc--C-------Cc------cchHHHhhcccccccccCcccccccccCHHHHhhccccceEE
Confidence 9999977532 00000 0 11 111222222201111224466677899999999999999999
Q ss_pred eeeeee-eecceeeeeecccccc
Q 039706 1144 REFMAC-ACQWRYQIVESQTEDC 1165 (1166)
Q Consensus 1144 ~~~~~C-~C~G~~q~~~~~~~~c 1165 (1166)
.....| +|.|.+-......+.|
T Consensus 162 ~~~~~~~t~~~~~~~~~~~~~~~ 184 (288)
T KOG0715|consen 162 NVLSDCETCFGSGAEEGAKRESC 184 (288)
T ss_pred EeecccccccCcCcccccccccc
Confidence 999999 9999884444444444
No 83
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.59 E-value=3.3e-15 Score=170.49 Aligned_cols=136 Identities=29% Similarity=0.370 Sum_probs=94.8
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++||+|||++|++||||+++. ..|+++|++|++||++|+||.+|
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~---------------------~~~~~~f~~i~~Ay~~L~~~~kr 62 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE---------------------PDAEARFKEVAEAWEVLSDEQRR 62 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHhhhHHHH
Confidence 489999999999999999999999999999999641 36889999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----CCCCCCCceEEeeeeeeeccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----NSAARGDIYSISFNLRIASNKRCYR 1138 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----~~~~rG~~~~~~~~lsf~ea~~G~~ 1138 (1166)
+.||.++...... +.+..........+.+. .....|..+|+.+. ...++|.++.+.+.|+|+|++.|++
T Consensus 63 ~~yD~~g~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~isLee~~~G~~ 136 (306)
T PRK10266 63 AEYDQLWQHRNDP----QFNRQFQHGDGQSFNAE--DFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTEHK 136 (306)
T ss_pred HHHHHhhccccCc----ccccccccCCCCCCCCC--CHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEEHHHhcCCce
Confidence 9999865311000 00000000000011111 11122444444321 1223578999999999999999999
Q ss_pred ceeeceee
Q 039706 1139 PFVTIREF 1146 (1166)
Q Consensus 1139 K~i~~~~~ 1146 (1166)
+.|+++..
T Consensus 137 k~i~~~~~ 144 (306)
T PRK10266 137 RTISYNLP 144 (306)
T ss_pred EEEEEecc
Confidence 99988744
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.59 E-value=4.2e-13 Score=160.68 Aligned_cols=283 Identities=19% Similarity=0.072 Sum_probs=221.6
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhhhHHhHHHHHHH
Q 039706 623 RMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV-CVDQKIAVEASDGLQKAQKVSECMQR 701 (1166)
Q Consensus 623 ~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n-~~a~~~l~Ea~~~L~k~~~~~e~~~~ 701 (1166)
...++++.+++|++.+|+++.+.+.++.-|..+++.+.|+.+.++++++++.+ ...|. .
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~wh--------------------L 518 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWH--------------------L 518 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHH--------------------H
Confidence 46789999999999999999999999999999999999999999999996653 23232 2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcccc---------
Q 039706 702 SAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDAN--------- 772 (1166)
Q Consensus 702 a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~--------- 772 (1166)
+...+. ..+++.+|+...+.++.-.|++......+..+-...++.++|+..+...|.+...........
T Consensus 519 LALvlS--a~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk 596 (799)
T KOG4162|consen 519 LALVLS--AQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLK 596 (799)
T ss_pred HHHHHh--hhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhh
Confidence 222222 368888999999999999888888888888888888999999888888887765221110000
Q ss_pred ---Cccc----------------------------ccCccch----hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 773 ---GQSM----------------------------ELDSSES----TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 773 ---g~~l----------------------------~ld~~~~----~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
..+. .+....+ ....+.....|...+..+...+..++|..++.++
T Consensus 597 ~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea 676 (799)
T KOG4162|consen 597 AGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA 676 (799)
T ss_pred cccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 0000 0000000 0011111223456788888899999999999886
Q ss_pred hcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHH
Q 039706 818 ESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAI 897 (1166)
Q Consensus 818 l~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi 897 (1166)
... .+..+..++..|..+...|++.+|.+.|..|+.++ |.+..+...+|.++.+.|+..-|.
T Consensus 677 ~~~--------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld----P~hv~s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 677 SKI--------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD----PDHVPSMTALAELLLELGSPRLAE 738 (799)
T ss_pred Hhc--------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHhCCcchHH
Confidence 322 23456778888999999999999999999999999 888899999999999999988888
Q ss_pred H--HHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 898 A--DCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 898 ~--~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
. .+..|++++|.+.++|+.+|.++..+|+.++|..+|+.|+++.+.++
T Consensus 739 ~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 739 KRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8 99999999999999999999999999999999999999999977653
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=2.9e-14 Score=155.78 Aligned_cols=249 Identities=14% Similarity=0.051 Sum_probs=213.6
Q ss_pred HHH-HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 609 WRL-SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 609 ~ay-~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
|.| ..+|.||+++|-+.+|...++.+|+..| .++.+..|+.+|.+..+...|+..|...+..-|.+..-+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l-------- 293 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYL-------- 293 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhh--------
Confidence 444 5689999999999999999999999775 678999999999999999999999999999988753211
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
.+.+..+...+++++|+++|..+++.+|.+.++...+|.-|+.-++.+-|+.+|+++|++.-.+++
T Consensus 294 --------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe 359 (478)
T KOG1129|consen 294 --------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE 359 (478)
T ss_pred --------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH
Confidence 111111224688999999999999999999999999999999999999999999999998765543
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
. ++++|.+.+..++++-++..|++++.... .....++.|+++|.
T Consensus 360 L-------------------------f~NigLCC~yaqQ~D~~L~sf~RAlstat-----------~~~~aaDvWYNlg~ 403 (478)
T KOG1129|consen 360 L-------------------------FCNIGLCCLYAQQIDLVLPSFQRALSTAT-----------QPGQAADVWYNLGF 403 (478)
T ss_pred H-------------------------HhhHHHHHHhhcchhhhHHHHHHHHhhcc-----------Ccchhhhhhhccce
Confidence 2 57899999999999999999999754221 12345788999999
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
++...|++.-|..+|+-||..+ +.+..++.|+|.+-.+.|+.++|..+++.|-.+.|+-.+..++++.+
T Consensus 404 vaV~iGD~nlA~rcfrlaL~~d----~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 404 VAVTIGDFNLAKRCFRLALTSD----AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred eEEeccchHHHHHHHHHHhccC----cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 9999999999999999999877 89999999999999999999999999999999999888777776544
No 86
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=1.9e-14 Score=157.71 Aligned_cols=123 Identities=29% Similarity=0.473 Sum_probs=113.2
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
....++.++..|+-+++.++|.+|+..|++||+++ |.++..|+|+|.+|.++|+|+.|+++|+.||.+||.+.++|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~----P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay 152 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD----PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC----CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH
Confidence 34457788899999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhhH
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAV 974 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~~ 974 (1166)
.+||.+|+.+|+|++|+..|++||+++|.+.. ++..|+.|+..+.+.
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~-------------~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALELDPDNES-------------YKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhccCCCcHH-------------HHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999854 456688888777653
No 87
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=8.2e-12 Score=146.46 Aligned_cols=331 Identities=16% Similarity=0.051 Sum_probs=245.2
Q ss_pred CchhHHHhhhHHhhCcch--hHHHHHHHH--HhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039706 577 DRNSEVDRGQEIKQEPNL--ASAETIAAQ--EACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCH 652 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~--A~a~~~aAI--e~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~ly 652 (1166)
+..-+.+-.+....+|.. +.+-+.-|| .+|....|...+..--.-|..++-...+++|+..-|.....|++.|..+
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 344444555555555543 233333333 3666677776666666778888888899999999999988999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHH-------------HHHHHhhcCCCHHHHHH
Q 039706 653 LALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRS-------------AQLLQNKTSNDAEIALG 719 (1166)
Q Consensus 653 l~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a-------------~~~l~~~~~gd~eeALe 719 (1166)
...|+...|...+.+|++.+|++...+.....+...-...+.+..++.++ ..+ .+.++..++|+.
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~--er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANL--ERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHH--HHHhhhHHHHHH
Confidence 99999999999999999999986554443333322222233333332222 111 234788999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHH
Q 039706 720 VIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFK 799 (1166)
Q Consensus 720 ~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ 799 (1166)
+++++|+..|....+|+++|.++..+++.+.|...|..-++..|...+. |.+++.
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL-------------------------WllLak 727 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL-------------------------WLLLAK 727 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH-------------------------HHHHHH
Confidence 9999999999999999999999999999999999999999999976553 456888
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC-------
Q 039706 800 SYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES------- 872 (1166)
Q Consensus 800 ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~------- 872 (1166)
+--..|..-.|...++++... ++..+..|+..-..-++.|+.++|.....+||+--|.+
T Consensus 728 leEk~~~~~rAR~ildrarlk--------------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEa 793 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLK--------------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEA 793 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhc--------------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHH
Confidence 888889999999999998443 34445566666667778888888888888887754210
Q ss_pred -------------------CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 873 -------------------HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 873 -------------------~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
...++.+++..|..+....++++|.+.|.+|+.++|++.++|...-..+...|.-++-.+.
T Consensus 794 I~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred HHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 1224556667788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhhhHHhh
Q 039706 934 FHRLIALLTKQIEKS 948 (1166)
Q Consensus 934 yekALeL~P~~~e~~ 948 (1166)
|.++....|.+.+.|
T Consensus 874 ~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 874 LKKCETAEPTHGELW 888 (913)
T ss_pred HHHHhccCCCCCcHH
Confidence 888888888777766
No 88
>PLN02789 farnesyltranstransferase
Probab=99.54 E-value=1.2e-12 Score=150.18 Aligned_cols=218 Identities=15% Similarity=0.094 Sum_probs=174.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG-EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG-d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~ 694 (1166)
.++...+++++|+..+.++|+++|.+..+|..++.++..+| ++++|+..+.++++.+|.+...+.....+...+
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l----- 119 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKL----- 119 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHc-----
Confidence 44777899999999999999999999999999999999999 689999999999999999755443322211111
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCc
Q 039706 695 VSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQ 774 (1166)
Q Consensus 695 ~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~ 774 (1166)
....+++++.+++++|+++|.+..+|..++.++..+++|++|++++.++|+++|.+..+
T Consensus 120 ---------------~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA------ 178 (320)
T PLN02789 120 ---------------GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA------ 178 (320)
T ss_pred ---------------CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH------
Confidence 11124678999999999999999999999999999999999999999999999988654
Q ss_pred ccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCC
Q 039706 775 SMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGR 854 (1166)
Q Consensus 775 ~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~ 854 (1166)
|..++.++..+++. +. ....
T Consensus 179 -------------------W~~R~~vl~~~~~l--------------------------------------~~---~~~~ 198 (320)
T PLN02789 179 -------------------WNQRYFVITRSPLL--------------------------------------GG---LEAM 198 (320)
T ss_pred -------------------HHHHHHHHHhcccc--------------------------------------cc---cccc
Confidence 22233332222110 00 0012
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEM 923 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~ 923 (1166)
.++++++..++|.++ |.+..+|+.++.++.. +++..+|+..|.+++..+|....|+..|+.+|..
T Consensus 199 ~e~el~y~~~aI~~~----P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILAN----PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhC----CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 456788888999998 8899999999999988 5667889999999999999999999999999985
No 89
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=4.5e-12 Score=139.32 Aligned_cols=276 Identities=14% Similarity=0.145 Sum_probs=207.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
|-.|.-++-..+.++|+..|..+++.+|...++++.||++|...|+.+.|+..-+..+ ..|+.....+.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~---------- 107 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRL---------- 107 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHH----------
Confidence 4468888888999999999999999999999999999999999999999999876654 46664332222
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
......+..++ ..|-++.|...|...+.....-..++..+..+|....+|++||+..++.+++.+.....
T Consensus 108 ----lAl~qL~~Dym---~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~--- 177 (389)
T COG2956 108 ----LALQQLGRDYM---AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV--- 177 (389)
T ss_pred ----HHHHHHHHHHH---HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---
Confidence 22222333333 36889999999999887766777899999999999999999999999999987754221
Q ss_pred cCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH
Q 039706 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ 851 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~ 851 (1166)
. ....|+.++..+....+++.|+..+.+|+..++. .+.+-..+|.++..
T Consensus 178 ----------e-------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~--------------cvRAsi~lG~v~~~ 226 (389)
T COG2956 178 ----------E-------IAQFYCELAQQALASSDVDRARELLKKALQADKK--------------CVRASIILGRVELA 226 (389)
T ss_pred ----------H-------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc--------------ceehhhhhhHHHHh
Confidence 1 1123567888888888888888888887543332 33344456888888
Q ss_pred cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHH
Q 039706 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 852 ~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi 931 (1166)
.|+|+.|++.|+.+++.+ ....+.+.-.+..||.++|+.++.+..+.++.+..+. +.+...++.+-....-.++|.
T Consensus 227 ~g~y~~AV~~~e~v~eQn---~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq 302 (389)
T COG2956 227 KGDYQKAVEALERVLEQN---PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQ 302 (389)
T ss_pred ccchHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHH
Confidence 888888888888888876 2344567777788888888888888888888887765 445556666666666677777
Q ss_pred HHHHHHHHHhhh
Q 039706 932 SDFHRLIALLTK 943 (1166)
Q Consensus 932 ~~yekALeL~P~ 943 (1166)
.++.+-+...|.
T Consensus 303 ~~l~~Ql~r~Pt 314 (389)
T COG2956 303 AYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHhhCCc
Confidence 776666655444
No 90
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=4.1e-12 Score=143.09 Aligned_cols=319 Identities=18% Similarity=0.127 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCC--------chhHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS--GSD--------VCVDQ 679 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel--~P~--------n~~a~ 679 (1166)
.+.|.|..+.+.|+|+.||..|+.+++..|++..+ ++|-.|++..|+-++-.+.|.+.+.+ .|+ +..+.
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~-~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA-LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHhCccHHhh-hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 46889999999999999999999999999987654 56788999999999999999999874 111 11122
Q ss_pred HHHHHHH--HHhhhHHhH-----HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHccCHH
Q 039706 680 KIAVEAS--DGLQKAQKV-----SECMQRSAQLLQNKTSNDAEIALGVIDEALFIS---SYSEKLLEMKAEALFMLRKYE 749 (1166)
Q Consensus 680 ~~l~Ea~--~~L~k~~~~-----~e~~~~a~~~l~~~~~gd~eeALe~lekALel~---P~~~~al~~lA~~y~~lGdye 749 (1166)
.++.++. ..|...++- ..++..+..++.-.-.-+|...-++.-+.++.. |-..++-..+|--|++.|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2222221 112221111 111111111111001111111111111111111 122233444555555555555
Q ss_pred HHHHHHHHHHHhccCCCCC-ccccCcccccC-ccchhh-hhh---------hhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 750 EVIQLCEQTFHFAEKNSPP-LDANGQSMELD-SSESTK-HVS---------FRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 750 eAi~~lekALel~p~n~~a-~~~~g~~l~ld-~~~~~~-~~~---------~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
.|++.+.-.-+.+.....+ ..++..+.-+. +..... ..| +....+.+.|.+.+..|++++|.+.|+++
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 5555543322222111111 00000000000 000000 000 00111233455667788888888888887
Q ss_pred hcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHH
Q 039706 818 ESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAI 897 (1166)
Q Consensus 818 l~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi 897 (1166)
+ .....-..+++++|..+..+|++++|+++|-+.-.+- ..++.+++.+|.+|..+.+..+||
T Consensus 517 l--------------~ndasc~ealfniglt~e~~~~ldeald~f~klh~il----~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 517 L--------------NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL----LNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred H--------------cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHhhCHHHHH
Confidence 3 3334456677888888888888888888888776655 567888888888888888888888
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 898 ADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 898 ~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
+++.++..+-|+++..+..||.+|-..|+..+|.+++-.....+|-+++.
T Consensus 579 e~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~ 628 (840)
T KOG2003|consen 579 ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET 628 (840)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH
Confidence 88888888888888888888888888888888888888888888887763
No 91
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=2e-14 Score=162.03 Aligned_cols=233 Identities=18% Similarity=0.114 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
++.+|..+|.....+++++.|+..|++++..++..+..+.+++.+ +..+++++|+..++++.+..++. .
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~-~--------- 111 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP-R--------- 111 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc-c---------
Confidence 345567789999999999999999999999999999999999999 79999999999999887755431 1
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS--SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~--P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
.+..+... ....++++++...++++.... +.++.++..+|.++...|++++|+.+|++++++.|+
T Consensus 112 -----------~l~~~l~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 112 -----------YLLSALQL--YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp -----------------H---HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred -----------hhhHHHHH--HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 11111111 124689999999999977655 678899999999999999999999999999999997
Q ss_pred CCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhh
Q 039706 765 NSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKS 844 (1166)
Q Consensus 765 n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~ 844 (1166)
+... ...++.++...|+++++...+....... +.....+..
T Consensus 179 ~~~~-------------------------~~~l~~~li~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~ 219 (280)
T PF13429_consen 179 DPDA-------------------------RNALAWLLIDMGDYDEAREALKRLLKAA--------------PDDPDLWDA 219 (280)
T ss_dssp -HHH-------------------------HHHHHHHHCTTCHHHHHHHHHHHHHHH---------------HTSCCHCHH
T ss_pred CHHH-------------------------HHHHHHHHHHCCChHHHHHHHHHHHHHC--------------cCHHHHHHH
Confidence 6432 2346677888899999777777642211 122234556
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
+|.++...|++++|+.+|++++..+ |.++..+..+|.++...|+.++|...+.+++..
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~----p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLN----PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHS----TT-HHHHHHHHHHHT------------------
T ss_pred HHHHhcccccccccccccccccccc----ccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999999988 999999999999999999999999999998753
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=4.1e-13 Score=157.02 Aligned_cols=228 Identities=14% Similarity=0.109 Sum_probs=158.5
Q ss_pred CchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 039706 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG 656 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG 656 (1166)
...|..-+-.+++++|.++.+... +|.++...++-..||..++++++++|++.+++..||..|...|
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~-------------LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQK-------------LGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHH-------------hhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 467777788888888887766666 8999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC--ChHHH
Q 039706 657 EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS--YSEKL 734 (1166)
Q Consensus 657 d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P--~~~~a 734 (1166)
.-.+|+.++.+-|...|........-.+ ......... .....+..-.+.|-.|....| .++++
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~--~~~~~~~s~-------------~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGEN--EDFENTKSF-------------LDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCcc--ccccCCcCC-------------CCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 9999999999999887763110000000 000000000 000001111222223333333 34444
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 039706 735 LEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAAL 814 (1166)
Q Consensus 735 l~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~l 814 (1166)
+..||.+|...++|++|+.+|+.||...|+
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pn-------------------------------------------------- 462 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPN-------------------------------------------------- 462 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCc--------------------------------------------------
Confidence 444444444444444444444444444443
Q ss_pred HHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchh
Q 039706 815 ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHIT 894 (1166)
Q Consensus 815 ekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~e 894 (1166)
+...|..+|-.+....+.++||..|++||++. |....++||+|.+++.+|.|+
T Consensus 463 -----------------------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq----P~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 463 -----------------------DYLLWNRLGATLANGNRSEEAISAYNRALQLQ----PGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred -----------------------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC----CCeeeeehhhhhhhhhhhhHH
Confidence 34446666888888889999999999999988 999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC
Q 039706 895 DAIADCNLAIALDGN 909 (1166)
Q Consensus 895 eAi~~lekALeldP~ 909 (1166)
+|+.+|-.||.+.+.
T Consensus 516 EA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999998654
No 93
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=1e-12 Score=139.87 Aligned_cols=174 Identities=16% Similarity=0.123 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHH
Q 039706 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEA 810 (1166)
Q Consensus 731 ~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeA 810 (1166)
....+..+|.++...|++++|+..+++++...|.+.. .+..+|.+|...|++++|
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------------------------~~~~la~~~~~~~~~~~A 84 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL-------------------------AYLALALYYQQLGELEKA 84 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH-------------------------HHHHHHHHHHHcCCHHHH
Confidence 3577888999999999999999999999888765422 145688899999999999
Q ss_pred HHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh
Q 039706 811 IAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL 890 (1166)
Q Consensus 811 l~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l 890 (1166)
+..+++++...+. ....+..+|..+...|++++|+..|.+++... ..+.....+.++|.++...
T Consensus 85 ~~~~~~al~~~~~--------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 85 EDSFRRALTLNPN--------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--LYPQPARSLENAGLCALKA 148 (234)
T ss_pred HHHHHHHHhhCCC--------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHc
Confidence 9999987543332 23456677999999999999999999999753 1245567889999999999
Q ss_pred hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 891 Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
|++++|+..|.+++..+|.+..++..+|.++...|++++|+..+++++.+.|...
T Consensus 149 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 203 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA 203 (234)
T ss_pred CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999999999999999999865543
No 94
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.51 E-value=8.5e-13 Score=147.71 Aligned_cols=294 Identities=17% Similarity=0.145 Sum_probs=204.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDPDFL----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP~~~----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
-|.-++++|++...+..|+.||+.-.++. ..|.+||++|+.+++|++|+++-..-|.+... +-..+
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~----------lgdkl 92 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL----------LGDKL 92 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH----------hcchh
Confidence 58889999999999999999999887663 57889999999999999999986543332110 00011
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHccCH-------------HH
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS------YSEKLLEMKAEALFMLRKY-------------EE 750 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P------~~~~al~~lA~~y~~lGdy-------------ee 750 (1166)
.. +. .-..++..+. -.|.|++|+.+..+-|.+.- ....+++++|.+|...|+. ++
T Consensus 93 GE---AK-ssgNLGNtlK--v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~e 166 (639)
T KOG1130|consen 93 GE---AK-SSGNLGNTLK--VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAE 166 (639)
T ss_pred cc---cc-ccccccchhh--hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHH
Confidence 11 00 1111111221 36888899888777765542 2347889999999988752 33
Q ss_pred HHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhh
Q 039706 751 VIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLI 830 (1166)
Q Consensus 751 Ai~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~ 830 (1166)
+...++.+++....+......++ .-......|-.||..|+.+|+|+.|+..-+.- ++.+.
T Consensus 167 v~~al~~Av~fy~eNL~l~~~lg------------Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~R--------L~ia~ 226 (639)
T KOG1130|consen 167 VTSALENAVKFYMENLELSEKLG------------DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLR--------LEIAQ 226 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh------------hHHhhcchhcccCceeeeeccHHHHHHHHHHH--------HHHHH
Confidence 44444444443322211000000 00111123456888999999999999988763 23333
Q ss_pred hhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC
Q 039706 831 PLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 831 ~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP 908 (1166)
+.......-.++-++|+++.-.|+++.|+++|..++.+.. ......+..-|.+|.+|.-+.++++||.++.+-|.+..
T Consensus 227 efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 227 EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556778899999999999999999999877653 34455677778899999999999999999999887742
Q ss_pred ------ChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 909 ------NYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 909 ------~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
....+++.||.+|-.+|..++|+...++.+++..+
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999887543
No 95
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.50 E-value=2.2e-11 Score=142.98 Aligned_cols=376 Identities=15% Similarity=0.056 Sum_probs=231.7
Q ss_pred CcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 591 EPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 591 ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
+|+.+..-+..|++.|+...- +=.+|..+.-|..|...+++|-+.=|.....|...|.+-...|+.+.-...+.+++.
T Consensus 391 ~~~darilL~rAveccp~s~d--LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~ 468 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQSMD--LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLS 468 (913)
T ss_pred ChHHHHHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456666777788888887532 223455667788888888888888888888888888888888888887777777765
Q ss_pred c-CCC-chhHHHHHHHHHHHhhhHHhHHHHHHHHHHHH------------------HhhcCCCHHHHHHHHHHHHHhCCC
Q 039706 671 S-GSD-VCVDQKIAVEASDGLQKAQKVSECMQRSAQLL------------------QNKTSNDAEIALGVIDEALFISSY 730 (1166)
Q Consensus 671 l-~P~-n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l------------------~~~~~gd~eeALe~lekALel~P~ 730 (1166)
. ..+ ....+..+..-.........+..|.......+ .....+.++-|+..|..+|+..|.
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~ 548 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC 548 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc
Confidence 2 111 11111111111111111111111111111000 012356677888888888888888
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHH
Q 039706 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEA 810 (1166)
Q Consensus 731 ~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeA 810 (1166)
...+|...+..--.-|..++-..++++++...|..... |.+.+..+...|+...|
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~l-------------------------wlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEIL-------------------------WLMYAKEKWKAGDVPAA 603 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhH-------------------------HHHHHHHHHhcCCcHHH
Confidence 88888888777777888888888888888887754321 34567777888888888
Q ss_pred HHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh
Q 039706 811 IAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL 890 (1166)
Q Consensus 811 l~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l 890 (1166)
+..+.++.+..++ ....++..-.+.+...+++.|..+|.+|.... ....+|+.-+.....+
T Consensus 604 r~il~~af~~~pn--------------seeiwlaavKle~en~e~eraR~llakar~~s-----gTeRv~mKs~~~er~l 664 (913)
T KOG0495|consen 604 RVILDQAFEANPN--------------SEEIWLAAVKLEFENDELERARDLLAKARSIS-----GTERVWMKSANLERYL 664 (913)
T ss_pred HHHHHHHHHhCCC--------------cHHHHHHHHHHhhccccHHHHHHHHHHHhccC-----CcchhhHHHhHHHHHh
Confidence 8888887443333 23334444555666777777777777776543 3445677777777777
Q ss_pred hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhh
Q 039706 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMR 970 (1166)
Q Consensus 891 Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~ 970 (1166)
+..++|+..|+++|+..|++.+.|+.+|+++..+++.+.|...|...++..|.....|.-.... .+....+-+|+.-
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl---eEk~~~~~rAR~i 741 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL---EEKDGQLVRARSI 741 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH---HHHhcchhhHHHH
Confidence 7777777777777777777777777777777777777777777777777777766555322221 1222334455554
Q ss_pred hhhHHhhhhccCccchhhhcccCCCCCHHHHHHHHHHHHhccCCCC
Q 039706 971 LTAVEEEARKDIPLDMYLILGVESSVSVADIKRGYRKAALRHHPDK 1016 (1166)
Q Consensus 971 Lk~~e~~~rk~~~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK 1016 (1166)
|....-... ....-|.+.+.+...++-.++.+.....||+-.|.-
T Consensus 742 ldrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 742 LDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 443321111 112223333333333444455555555666655543
No 96
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=1.1e-11 Score=147.62 Aligned_cols=256 Identities=15% Similarity=0.014 Sum_probs=190.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFL-RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~-~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
+...|.++..+|+++.|..++.++++..|+.. .+...++.+++..|+++.|+..++++++..|+++.....+..++...
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 44467888888999999999999988888875 46666788999999999999999999999898887777777777777
Q ss_pred hhHHhHHHHHHHHHHHH----------------HhhcCCCHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHccCHH
Q 039706 690 QKAQKVSECMQRSAQLL----------------QNKTSNDAEIALGVIDEALFISS----YSEKLLEMKAEALFMLRKYE 749 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l----------------~~~~~gd~eeALe~lekALel~P----~~~~al~~lA~~y~~lGdye 749 (1166)
++...+...+..+.... .....+..++++..+.++....| +++.++..+|..+...|+++
T Consensus 201 ~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 201 GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 76665554443332110 00112223344557777777777 58899999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 750 EVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 750 eAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
+|+..++++++..|++.... + ...........++.+.+++.+++++...++.
T Consensus 281 ~A~~~l~~~l~~~pd~~~~~---------------------~--~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~----- 332 (409)
T TIGR00540 281 SAQEIIFDGLKKLGDDRAIS---------------------L--PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK----- 332 (409)
T ss_pred HHHHHHHHHHhhCCCcccch---------------------h--HHHHHhhhcCCCChHHHHHHHHHHHHhCCCC-----
Confidence 99999999999988764320 0 0112233344678888999998875443331
Q ss_pred hhhccchHHHHHHhhhhHHHHHcCChHHHHHHHH--HHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 830 IPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYT--AALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~--kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
..+..+..+|.++++.|+|++|.++|+ .+++.. |.... +..+|.++.++|+.++|..++++++.+
T Consensus 333 -------~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~----p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 333 -------PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ----LDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred -------hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC----CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112566678999999999999999999 566665 55544 558999999999999999999998765
No 97
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=3.5e-12 Score=135.27 Aligned_cols=203 Identities=16% Similarity=0.017 Sum_probs=167.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 703 AQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 703 ~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
...+.+...|++..|...+++||+.+|.+..+|..+|.+|..+|+.+.|-+.|++++.++|++...
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV-------------- 105 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV-------------- 105 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch--------------
Confidence 334445568999999999999999999999999999999999999999999999999999987654
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
+.+.|..++.+|++++|...|++|+....- ......+.++|.+.++.|+++.|.++|
T Consensus 106 -----------LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y------------~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 106 -----------LNNYGAFLCAQGRPEEAMQQFERALADPAY------------GEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred -----------hhhhhHHHHhCCChHHHHHHHHHHHhCCCC------------CCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 355677788899999999999987543221 123455677888899999999999999
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 863 TAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
+++|+++ |..+.....++..++..|+|..|..++++....-+-.+..+.....+-..+||-+.|-.+=.+...++|
T Consensus 163 ~raL~~d----p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 163 KRALELD----PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHhC----cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999888 777778888888899999999999999888887777777777777788888888888888888888888
Q ss_pred hhHH
Q 039706 943 KQIE 946 (1166)
Q Consensus 943 ~~~e 946 (1166)
...+
T Consensus 239 ~s~e 242 (250)
T COG3063 239 YSEE 242 (250)
T ss_pred CcHH
Confidence 7655
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.47 E-value=1.1e-10 Score=135.37 Aligned_cols=298 Identities=14% Similarity=-0.032 Sum_probs=191.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH---HHHHH
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI---AVEAS 686 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~---l~Ea~ 686 (1166)
.+|..|...|++..|...+.++....|.. .+..+..|.++...|++++|...++++++..|.+...... +....
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~ 90 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLG 90 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhc
Confidence 36777777788888888888877777644 4566677788888888888888888888888876544331 00000
Q ss_pred HHhhhHHhHHH------------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 687 DGLQKAQKVSE------------CMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 687 ~~L~k~~~~~e------------~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
........... .+............|++++|+..+++++++.|.++.++..+|.+|+..|++++|+..
T Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 91 DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 00000011111 111112222334689999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
+++++...|..+.. ....+..++.++...|++++|+..|+++....+...
T Consensus 171 l~~~l~~~~~~~~~---------------------~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~--------- 220 (355)
T cd05804 171 MESWRDTWDCSSML---------------------RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESD--------- 220 (355)
T ss_pred HHhhhhccCCCcch---------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCC---------
Confidence 99999887742211 011234689999999999999999999744332100
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc-c-CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC---
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV-E-SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN--- 909 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~-e-~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~--- 909 (1166)
..........+...+...|....+..+ +.+..... . ..+........++.++...|+.++|...++......-.
T Consensus 221 ~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 299 (355)
T cd05804 221 PALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADD 299 (355)
T ss_pred hHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCc
Confidence 000000000111122233322222221 11111100 0 00222233346888899999999999999887664322
Q ss_pred ------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 910 ------YLKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 910 ------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
...+...+|.++...|++++|+..+..++.+.
T Consensus 300 ~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 300 NKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35667788999999999999999999999875
No 99
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=8e-11 Score=139.74 Aligned_cols=247 Identities=15% Similarity=0.026 Sum_probs=186.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhH
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDPDFLR-VQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKA 692 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP~~~~-A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~ 692 (1166)
-|.+....|+++.|..+|.++.+.+|+... .....+.++...|++++|+..++++++..|+++.....+..++...++.
T Consensus 124 aA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 124 AAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence 355558999999999999999999998854 4455699999999999999999999999999988888888887777776
Q ss_pred HhHHHHHHHHHHHHH--------------------hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHH
Q 039706 693 QKVSECMQRSAQLLQ--------------------NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVI 752 (1166)
Q Consensus 693 ~~~~e~~~~a~~~l~--------------------~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi 752 (1166)
..+...+..+..... .....+.+.....++..-...|+++.++..+|..+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 666544433322110 001122223333333333445678999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 753 QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 753 ~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
..++++++..+ ++. ..+.......++.+++++.+++.+.
T Consensus 284 ~~L~~~l~~~~-~~~---------------------------l~~l~~~l~~~~~~~al~~~e~~lk------------- 322 (398)
T PRK10747 284 QIILDGLKRQY-DER---------------------------LVLLIPRLKTNNPEQLEKVLRQQIK------------- 322 (398)
T ss_pred HHHHHHHhcCC-CHH---------------------------HHHHHhhccCCChHHHHHHHHHHHh-------------
Confidence 99999998433 211 0112223345999999999998743
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
..+.+...+..+|..+...++|.+|.++|+++++.. |.... +..++.++.++|+.++|..+|++++.+.
T Consensus 323 -~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~----P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 323 -QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR----PDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344456677778999999999999999999999987 66544 5579999999999999999999998764
No 100
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.1e-10 Score=131.61 Aligned_cols=317 Identities=11% Similarity=0.084 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH-
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD- 687 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~- 687 (1166)
..-+..+.||...++-+.|+.....+.... ..+...+.+++.+-.-++..++.-.|...+...|--......+.+...
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 445678999999999999998876543321 346677888888888888778888888877766542111111111000
Q ss_pred HhhhH---------HhHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHH
Q 039706 688 GLQKA---------QKVSECMQRSAQLLQNK--TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCE 756 (1166)
Q Consensus 688 ~L~k~---------~~~~e~~~~a~~~l~~~--~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~le 756 (1166)
..... .....+...-..++... ....+.-+..++-+....-|++..++..+|.+++..|++.+|+..|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 00000 00001111111111111 12334455566666677789999999999999999999999999999
Q ss_pred HHHHhccCCCCCccccCcccccCcc--chhhhhh-------hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhh
Q 039706 757 QTFHFAEKNSPPLDANGQSMELDSS--ESTKHVS-------FRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLE 827 (1166)
Q Consensus 757 kALel~p~n~~a~~~~g~~l~ld~~--~~~~~~~-------~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le 827 (1166)
++.-++|.+......++.++...+. ...+... .....|..-+..++...+++.|+.+-+++++.++
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~----- 331 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP----- 331 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-----
Confidence 9999999888776666555533222 1111100 0011234456778889999999999999854433
Q ss_pred hhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHH-----------
Q 039706 828 SLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA----------- 896 (1166)
Q Consensus 828 ~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeA----------- 896 (1166)
+....+...|..+...++.++|+-+|+.|+.+. |....+|..+-.+|+..|++.+|
T Consensus 332 ---------r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La----p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 332 ---------RNHEALILKGRLLIALERHTQAVIAFRTAQMLA----PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred ---------ccchHHHhccHHHHhccchHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 345566677999999999999999999999988 88888998888888888776655
Q ss_pred -------------------------HHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 897 -------------------------IADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 897 -------------------------i~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
...++++|.+.|.+..|...+|.++...|.+++++..+++++..+|+.
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 445667777788899999999999999999999999999999887765
No 101
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=6.5e-11 Score=142.20 Aligned_cols=211 Identities=16% Similarity=0.115 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHH
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWR 793 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr 793 (1166)
..+++..+++|++.+|.++.+.+.++.-|..+++.+.|++++++++++++..... .
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~----------------------~-- 515 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAK----------------------A-- 515 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHH----------------------H--
Confidence 4678888888888899888888888888888899999999999888886544221 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCc-------------------hhhhh-------------------------
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGK-------------------MLESL------------------------- 829 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k-------------------~le~a------------------------- 829 (1166)
|.+++.++...+++.+|+.....++...+.+ .+..+
T Consensus 516 whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~l 595 (799)
T KOG4162|consen 516 WHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRL 595 (799)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhh
Confidence 3446666666666666666555544322210 00000
Q ss_pred ---------------------hhhc-------------------cc-----hHHHHHHhhhhHHHHHcCChHHHHHHHHH
Q 039706 830 ---------------------IPLA-------------------GT-----VRELLCRKSAGNEAFQAGRHSEAVEHYTA 864 (1166)
Q Consensus 830 ---------------------~~L~-------------------~~-----~~~a~~l~~lG~~~~~~G~yeEAie~y~k 864 (1166)
..+. +. ......|...+..+...+.-++|..++.+
T Consensus 596 k~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 596 KAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred hcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 0000 00 00122344567788888888999999999
Q ss_pred HHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHH--HHHHHHHHhh
Q 039706 865 ALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAAS--DFHRLIALLT 942 (1166)
Q Consensus 865 ALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~--~yekALeL~P 942 (1166)
|-.+. +..+..|+.+|.++...|++.+|.+.|..|+.++|+++.+...+|.+|...|+..-|.. .+..+++++|
T Consensus 676 a~~~~----~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 676 ASKID----PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHhcc----hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 99888 89999999999999999999999999999999999999999999999999999888887 9999999999
Q ss_pred hhHHhhccCC
Q 039706 943 KQIEKSNQSG 952 (1166)
Q Consensus 943 ~~~e~~~~~~ 952 (1166)
.+.+.|...|
T Consensus 752 ~n~eaW~~LG 761 (799)
T KOG4162|consen 752 LNHEAWYYLG 761 (799)
T ss_pred CCHHHHHHHH
Confidence 9999996554
No 102
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=2.2e-11 Score=129.22 Aligned_cols=205 Identities=16% Similarity=0.020 Sum_probs=152.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
...+|..|+..|++..|...+++||+.||++..+|..+|.+|..+|+.+.|.+.|++|+.++|+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---------------- 101 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN---------------- 101 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC----------------
Confidence 4568999999999999999999999999999999999999999999999999999988776665
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
+.+++.+.|..++.+|+|++|...|++++.. |.....
T Consensus 102 ----------------------------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~-- 138 (250)
T COG3063 102 ----------------------------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEP-- 138 (250)
T ss_pred ----------------------------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCc--
Confidence 4456677777777777888888777777743 322211
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
...+.++|.|.++.|+++.|..+|++++..++. .......++..++
T Consensus 139 --------------------s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~--------------~~~~~l~~a~~~~ 184 (250)
T COG3063 139 --------------------SDTLENLGLCALKAGQFDQAEEYLKRALELDPQ--------------FPPALLELARLHY 184 (250)
T ss_pred --------------------chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC--------------CChHHHHHHHHHH
Confidence 112455777777778888888888777544443 2344555677888
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~ 912 (1166)
..|+|..|..++++...-. +..+..+.....+-..+|+-+.|-.+=.+.-.+.|...+
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~----~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 185 KAGDYAPARLYLERYQQRG----GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hcccchHHHHHHHHHHhcc----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 8888888888888876644 444555554555666778887777777777777776554
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.42 E-value=2.4e-11 Score=133.14 Aligned_cols=69 Identities=13% Similarity=0.015 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFL---RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~---~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~ 676 (1166)
...++++|..++..|++++|+..|++++..+|.+. .+++.+|.+|..+|++++|+..|+++++..|++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 34567889999999999999999999999998765 6789999999999999999999999988888743
No 104
>PLN02789 farnesyltranstransferase
Probab=99.41 E-value=7.1e-12 Score=143.81 Aligned_cols=191 Identities=10% Similarity=-0.014 Sum_probs=159.0
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR-KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG-dyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
.+.+++|+..+.++|.++|.+..+|..++.++..++ ++++|+..+.+++..+|++..+
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa--------------------- 108 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI--------------------- 108 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH---------------------
Confidence 578899999999999999999999999999999999 6899999999999999987554
Q ss_pred hhHHHHHHHHHHHHcCCH--HHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 790 RLWRCCLIFKSYFTLGRL--EEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~--eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
|...+.++..+++. ++++.++.+++. ..++...+|..++.++...++|++|+++++++|+
T Consensus 109 ----W~~R~~~l~~l~~~~~~~el~~~~kal~--------------~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 109 ----WHHRRWLAEKLGPDAANKELEFTRKILS--------------LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred ----hHHHHHHHHHcCchhhHHHHHHHHHHHH--------------hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23345555666653 678888888743 3444566777789999999999999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHh---hch----hHHHHHHHHHHHhCCChHHHHHHHHHHHHH----hhCHHHHHHHHHH
Q 039706 868 CTVESHPFAAICFCNRAAAYKAL---RHI----TDAIADCNLAIALDGNYLKAISRRATLYEM----IRDYDHAASDFHR 936 (1166)
Q Consensus 868 l~~e~~p~~a~a~~nlA~ay~~l---Gq~----eeAi~~lekALeldP~~~~A~~~LA~ay~~----lGdyeeAi~~yek 936 (1166)
++ +.+..+|+.++.++..+ +.+ ++++.++.++|.++|++..+|..++.++.. ++...+|+..+.+
T Consensus 171 ~d----~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 171 ED----VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HC----CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 98 88999999999998876 333 478899999999999999999999999987 5567788888888
Q ss_pred HHHHhhhh
Q 039706 937 LIALLTKQ 944 (1166)
Q Consensus 937 ALeL~P~~ 944 (1166)
++...|+.
T Consensus 247 ~~~~~~~s 254 (320)
T PLN02789 247 VLSKDSNH 254 (320)
T ss_pred hhcccCCc
Confidence 77654443
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.37 E-value=3.3e-11 Score=151.46 Aligned_cols=247 Identities=14% Similarity=0.064 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..++..+...|...+++++|+..|+.+++..|+...+|+.+|.++++.+++.+|... .++.+-+.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~------------- 95 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ------------- 95 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc-------------
Confidence 356788899999999999999999999999999999999999999999998888776 55554333
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
..+| .+++++...+...+.+..+++.+|.||-.+|++++|+..|+++|+++|+++.
T Consensus 96 -----------------------~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~ 151 (906)
T PRK14720 96 -----------------------NLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE 151 (906)
T ss_pred -----------------------ccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH
Confidence 2344 5666666667677888889999999999999999999999999999988765
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
+ +.++|..|... ++++|+.++.+| ..
T Consensus 152 a-------------------------LNn~AY~~ae~-dL~KA~~m~~KA----------------------------V~ 177 (906)
T PRK14720 152 I-------------------------VKKLATSYEEE-DKEKAITYLKKA----------------------------IY 177 (906)
T ss_pred H-------------------------HHHHHHHHHHh-hHHHHHHHHHHH----------------------------HH
Confidence 4 45677788888 999999999987 22
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCc----------------hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHP----------------FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p----------------~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
.++..++|.++.+++.+.+..++..-. ....++.-+=.+|...++|++++..+..+|+++|.+.
T Consensus 178 ~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 178 RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch
Confidence 356677888888888888877632111 1122333344788899999999999999999999999
Q ss_pred HHHHHHHHHHHHh--------------------hCHHHHHHHHHHHHHHhhhhHHh
Q 039706 912 KAISRRATLYEMI--------------------RDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 912 ~A~~~LA~ay~~l--------------------GdyeeAi~~yekALeL~P~~~e~ 947 (1166)
.+...++.+|... ..+..|+..|++.+.+.+.+.-.
T Consensus 258 ~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv~ 313 (906)
T PRK14720 258 KAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNFVY 313 (906)
T ss_pred hhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCEEE
Confidence 9999999999743 24567777777777777766543
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.37 E-value=3.1e-11 Score=147.11 Aligned_cols=324 Identities=12% Similarity=-0.009 Sum_probs=225.1
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHH
Q 039706 620 ALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECM 699 (1166)
Q Consensus 620 ~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~ 699 (1166)
...+...|+..|-++++++|..+.++..||.+|...-+...|.++|.+|.++++.+..+.....+.+......+.+....
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34458899999999999999999999999999999999999999999999999998877777766666555554443321
Q ss_pred HHHH--------------HHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 700 QRSA--------------QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 700 ~~a~--------------~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
.... +...+...++..+|+..++.|+..+|.+...|..+|++|...|+|..|+..+.++..++|..
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 1111 11113457889999999999999999999999999999999999999999999999999865
Q ss_pred CCCccccCcccccCccc-hh------hhhh----------hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------CC
Q 039706 766 SPPLDANGQSMELDSSE-ST------KHVS----------FRLWRCCLIFKSYFTLGRLEEAIAALERHES-------GN 821 (1166)
Q Consensus 766 ~~a~~~~g~~l~ld~~~-~~------~~~~----------~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~-------~~ 821 (1166)
.....-.. +++-+... .. ..++ -....+.+++..++..|=+.+|...+++.+. ..
T Consensus 630 ~y~~fk~A-~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 KYGRFKEA-VMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred HHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 32210000 00000000 00 0000 0011122333444444444444444444322 00
Q ss_pred ----------------------CCch----hhhhhh-------h----------------ccchHHHHHHhhhhHHHHH-
Q 039706 822 ----------------------GGKM----LESLIP-------L----------------AGTVRELLCRKSAGNEAFQ- 851 (1166)
Q Consensus 822 ----------------------~~k~----le~a~~-------L----------------~~~~~~a~~l~~lG~~~~~- 851 (1166)
++.. +..... + .........|+++|..|++
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 0000 000000 0 0000112345677766665
Q ss_pred -------cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 852 -------AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 852 -------~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
..+-..|+.++.+++++. ..+...|..+|.+ ...|.+.-|..+|-+++.+.|....+|.++|.++...
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~----ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLC----ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHh----hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 223357899999999887 7788889989888 6668899999999999999999999999999999999
Q ss_pred hCHHHHHHHHHHHHHHhhhhHHhhc
Q 039706 925 RDYDHAASDFHRLIALLTKQIEKSN 949 (1166)
Q Consensus 925 GdyeeAi~~yekALeL~P~~~e~~~ 949 (1166)
.|++.|...|.++..++|.+...|.
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~Wl 888 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWL 888 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHH
Confidence 9999999999999999999988773
No 107
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.37 E-value=1.1e-10 Score=137.98 Aligned_cols=280 Identities=15% Similarity=0.081 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+++.++.-.+..++|.+.+..++.+|+-.|.+++.+...|..+..+|+-++|..+...++..++.+...|..+.-
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl---- 83 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGL---- 83 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHH----
Confidence 4578899999999999999999999999999999999999999999999999999999999999987776655422
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
+ ++...+|.+||.+|..|+.+.|++..+|..++.+..++++|+-....-.+.+++.|.....
T Consensus 84 ----------------~--~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~ 145 (700)
T KOG1156|consen 84 ----------------L--QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRAS 145 (700)
T ss_pred ----------------H--HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHH
Confidence 1 3457899999999999999999999999999999999999999999999999988754321
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
|...+.+++..|++..|+..++........ ..-..........+....+
T Consensus 146 -------------------------w~~~Avs~~L~g~y~~A~~il~ef~~t~~~------~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 146 -------------------------WIGFAVAQHLLGEYKMALEILEEFEKTQNT------SPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCCHHHHHHHHHHHHHHHH
Confidence 455788899999999999988875332210 0011122334455556778
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHH
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYD 928 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdye 928 (1166)
..+.|.+++|++.+..--..- -+........|..++.++++++|+..|...|..+|++...+..+-.++....+--
T Consensus 195 ~~E~g~~q~ale~L~~~e~~i----~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQI----VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHcccHHHHHHHHHhhhhHH----HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhH
Confidence 889999999988876643211 2334455668899999999999999999999999999999888877776444444
Q ss_pred HHH-HHHHHHHHHhhhhH
Q 039706 929 HAA-SDFHRLIALLTKQI 945 (1166)
Q Consensus 929 eAi-~~yekALeL~P~~~ 945 (1166)
+++ ..|...-+..|...
T Consensus 271 ~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHE 288 (700)
T ss_pred HHHHHHHHHHhhcCcccc
Confidence 555 56666555555543
No 108
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=1.8e-10 Score=138.21 Aligned_cols=209 Identities=20% Similarity=0.134 Sum_probs=170.3
Q ss_pred cCCCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCcc
Q 039706 710 TSNDAEIALGVIDEALFI--------SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSS 781 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel--------~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~ 781 (1166)
.+|+|+.|+..++.|+++ .|.-...+..+|.+|..+++|.+|+.+|+++|.+....... +..
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~----------~h~ 280 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE----------DHP 280 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC----------CCH
Confidence 589999999999999998 56666667779999999999999999999999886543221 111
Q ss_pred chhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHH
Q 039706 782 ESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEH 861 (1166)
Q Consensus 782 ~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~ 861 (1166)
..+..+..||.+|+..|++++|..++++|+..... ............+.+++.++...+++++|+.+
T Consensus 281 -------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~------~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 281 -------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK------LLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred -------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH------hhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 11233577999999999999999999998542211 11233445566778889999999999999999
Q ss_pred HHHHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--------CChHHHHHHHHHHHHHhhCHHH
Q 039706 862 YTAALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD--------GNYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 862 y~kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--------P~~~~A~~~LA~ay~~lGdyee 929 (1166)
|++++++.. ..++..+..+.++|.+|+.+|+|.+|.+.|++||.+. +.....+..+|..|..++++.+
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 999998753 3445678899999999999999999999999999874 3446788899999999999999
Q ss_pred HHHHHHHHHHHh
Q 039706 930 AASDFHRLIALL 941 (1166)
Q Consensus 930 Ai~~yekALeL~ 941 (1166)
|...|.+++.+.
T Consensus 428 a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 428 AEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHHHHH
Confidence 999999999987
No 109
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.5e-13 Score=142.99 Aligned_cols=70 Identities=47% Similarity=0.763 Sum_probs=64.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..++|.+||++++++.++||++||++++++|||+++.. +++.++|++|++||+||+||.+
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~--------------------P~~~dkf~eIN~Ay~ILsD~~k 89 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN--------------------PEATDKFKEINTAYAILSDPTK 89 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC--------------------chhHHHHHHHHHHHHHhcChhh
Confidence 46899999999999999999999999999999998742 4688999999999999999999
Q ss_pred hcccchhhhh
Q 039706 1063 RSRYDLEEET 1072 (1166)
Q Consensus 1063 R~~YD~~~~~ 1072 (1166)
|..||.++..
T Consensus 90 R~~YD~~g~~ 99 (279)
T KOG0716|consen 90 RNVYDEYGEL 99 (279)
T ss_pred hhhHHHhhhH
Confidence 9999997653
No 110
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=2.5e-10 Score=125.83 Aligned_cols=202 Identities=13% Similarity=0.050 Sum_probs=169.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
..+.++|+..|-..++.+|...++++.+|.++...|..+.||.+-+..+. .|+... ..+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~--------------------~qr 106 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTF--------------------EQR 106 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCch--------------------HHH
Confidence 68889999999999999999999999999999999999999999776653 343221 123
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
...+..||.-|+..|-++.|...|....+. ..-...++..+-.+|....+|++||+..++...+.+
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 344577999999999999999999885221 111233455668899999999999999999998874
Q ss_pred c-CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 871 E-SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 871 e-~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
. ..-.-+..||.+|..+....+.+.|+..+.+|++.+|+...|-..+|.++...|+|++|++.|+.+++.+|+-...
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH
Confidence 2 3345678999999999999999999999999999999999999999999999999999999999999998887653
No 111
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=5.6e-10 Score=132.13 Aligned_cols=308 Identities=18% Similarity=0.080 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
.+.-.|..+..+|+-++|...+..++..|+...-.|.-+|.++....+|++|+++|+.|+.++|+|..-+..+.-+..+
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q- 121 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ- 121 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-
Confidence 3444899999999999999999999999999999999999999999999999999999999999986544433322222
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
.++++-....-.+.+++.|.....|...|.++...|+|..|+..++...+.....+...
T Consensus 122 ---------------------mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~ 180 (700)
T KOG1156|consen 122 ---------------------MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKE 180 (700)
T ss_pred ---------------------HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHH
Confidence 35555566666677788888888888888888888888888888777766553222211
Q ss_pred cccC--------cc-cccCccc--------hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 770 DANG--------QS-MELDSSE--------STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 770 ~~~g--------~~-l~ld~~~--------~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
.... .. ......+ ......-.+......+.+++.++++++|+..|...+...|+ ....
T Consensus 181 ~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-----n~~Y 255 (700)
T KOG1156|consen 181 DYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-----NLDY 255 (700)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-----hHHH
Confidence 0000 00 0000000 00001111122234677788888888888888886444443 1111
Q ss_pred ccchHHHHH-HhhhhHH----H--------------------HHcCChHHHHH---------------------------
Q 039706 833 AGTVRELLC-RKSAGNE----A--------------------FQAGRHSEAVE--------------------------- 860 (1166)
Q Consensus 833 ~~~~~~a~~-l~~lG~~----~--------------------~~~G~yeEAie--------------------------- 860 (1166)
+.....+.- ....+.. | ..-.++.+.+.
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k 335 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK 335 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH
Confidence 111111110 0000000 0 00001111111
Q ss_pred --HHHHH-------Hhccc----------cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 861 --HYTAA-------LSCTV----------ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 861 --~y~kA-------Lel~~----------e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
..++. +.-.. +....-.++++.++.-|..+|+++.|..+++.||..-|+.++.|...|.++
T Consensus 336 ~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~ 415 (700)
T KOG1156|consen 336 VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIF 415 (700)
T ss_pred hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 11111 10000 011122455667888899999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHhhhh
Q 039706 922 EMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 922 ~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
...|++++|...+.++.+++-.+
T Consensus 416 kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 416 KHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred HhcCChHHHHHHHHHHHhccchh
Confidence 99999999999999998886554
No 112
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.33 E-value=1.1e-09 Score=132.53 Aligned_cols=309 Identities=18% Similarity=0.085 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
.+..++.++...|++++|+..++.....-.+...++..+|.+|+.+|++++|...|...|..+|++..-...+..+....
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence 34557888999999999999999988888888999999999999999999999999999999999876655555543111
Q ss_pred h-----hHHhHHHHHHHHHHHHH----------hhcC-CCHHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHH
Q 039706 690 Q-----KAQKVSECMQRSAQLLQ----------NKTS-NDAEIA-LGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVI 752 (1166)
Q Consensus 690 ~-----k~~~~~e~~~~a~~~l~----------~~~~-gd~eeA-Le~lekALel~P~~~~al~~lA~~y~~lGdyeeAi 752 (1166)
. ........+......+. .... ..+... -.++...|.. .-|.+...+-.+|....+..-..
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHH
Confidence 1 11111222222111110 0001 123222 2333333332 23344444444444222222222
Q ss_pred HHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 753 QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 753 ~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
.++...+......... -. ............+|.++.++..|...|++++|+.++++++..+|
T Consensus 164 ~l~~~~~~~l~~~~~~-------~~-~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP---------- 225 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSF-------SN-GDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP---------- 225 (517)
T ss_pred HHHHHHHHhhcccCCC-------CC-ccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC----------
Confidence 2333322211111000 00 00111223345679999999999999999999999999855444
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC---
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN--- 909 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~--- 909 (1166)
..++.+...|.++-..|++.+|.+.++.|-.++ ..+--+-...+..+++.|++++|+..+..-...+-+
T Consensus 226 ----t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD----~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 226 ----TLVELYMTKARILKHAGDLKEAAEAMDEARELD----LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred ----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC----hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 456778888999999999999999999999998 666666666778888999999999999877655421
Q ss_pred ------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 910 ------YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 910 ------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.......-|.+|...|++..|+..|..+.+.+.+..+
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 1222344699999999999999999999988766544
No 113
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.31 E-value=2.8e-09 Score=139.08 Aligned_cols=290 Identities=10% Similarity=-0.028 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCchhHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDP-DFLRVQVRAANCHLALGEIEDASKYFRMCLQS--GSDVCVDQKIAVEA 685 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP-~~~~A~~~LA~lyl~lGd~eeAl~~fekALel--~P~n~~a~~~l~Ea 685 (1166)
..|..+..+|.+.|++++|+..|+++.+... -+...|..+...|.+.|++++|+..|...... .|+ ...+..+..+
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a 551 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence 3455567778888888888888888876543 25677888888888888888888888877653 444 2223333333
Q ss_pred HHHhhhHHhHHHHHHHHH---------------HHHHhhcCCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHccCHH
Q 039706 686 SDGLQKAQKVSECMQRSA---------------QLLQNKTSNDAEIALGVIDEALFIS-SYSEKLLEMKAEALFMLRKYE 749 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~---------------~~l~~~~~gd~eeALe~lekALel~-P~~~~al~~lA~~y~~lGdye 749 (1166)
+........+...+.... .+..+.+.|++++|++.|+++.+.. +.+...|..+...|.+.|+++
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d 631 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Confidence 333222222222221111 0111335788888888888887765 345677778888888888888
Q ss_pred HHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 750 EVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 750 eAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
+|+.+|.+..+..- .+. ...|..+..+|...|++++|+.+++........
T Consensus 632 eAl~lf~eM~~~Gv---------------~PD---------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~------ 681 (1060)
T PLN03218 632 FALSIYDDMKKKGV---------------KPD---------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK------ 681 (1060)
T ss_pred HHHHHHHHHHHcCC---------------CCC---------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------
Confidence 88888887765421 011 112445667788888888888888876432111
Q ss_pred hhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--C
Q 039706 830 IPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--D 907 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--d 907 (1166)
.....+..+...|.+.|++++|++.|++..... . ..+...|..+...|.+.|++++|++.+++.... .
T Consensus 682 -------pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g--~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 682 -------LGTVSYSSLMGACSNAKNWKKALELYEDIKSIK--L-RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred -------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 123456667888889999999999998886542 1 234567888888899999999999999987664 3
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
|+ ...|..+..++...|++++|...+.++++.
T Consensus 752 Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 752 PN-TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 54 456666778888899999999988888753
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.31 E-value=1e-10 Score=128.19 Aligned_cols=183 Identities=17% Similarity=0.036 Sum_probs=135.0
Q ss_pred hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCC
Q 039706 727 ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGR 806 (1166)
Q Consensus 727 l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd 806 (1166)
.++..+..++.+|..++..|++++|+..+++++...|.++.. ...++.+|.+|+..|+
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~----------------------~~a~~~la~~~~~~~~ 85 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA----------------------EQAQLDLAYAYYKSGD 85 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH----------------------HHHHHHHHHHHHhcCC
Confidence 344566788888888888888888888888888887754321 0113557888888888
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc--------CChHHHHHHHHHHHhccccCCchh-H
Q 039706 807 LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA--------GRHSEAVEHYTAALSCTVESHPFA-A 877 (1166)
Q Consensus 807 ~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~--------G~yeEAie~y~kALel~~e~~p~~-a 877 (1166)
+++|+..|++++...+... .....+..+|.+++.. +++++|++.|++++...|.+.... +
T Consensus 86 ~~~A~~~~~~~l~~~p~~~-----------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a 154 (235)
T TIGR03302 86 YAEAIAAADRFIRLHPNHP-----------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA 154 (235)
T ss_pred HHHHHHHHHHHHHHCcCCC-----------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH
Confidence 8888888888755444311 1122455567777665 789999999999999874331110 0
Q ss_pred ------------HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 878 ------------ICFCNRAAAYKALRHITDAIADCNLAIALDGN---YLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 878 ------------~a~~nlA~ay~~lGq~eeAi~~lekALeldP~---~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
.....+|.+|...|++.+|+..|++++...|+ .+.+++.+|.+|..+|++++|+.+++.+....|
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11246788999999999999999999999765 468999999999999999999999888776554
No 115
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.6e-12 Score=147.76 Aligned_cols=72 Identities=38% Similarity=0.629 Sum_probs=67.1
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|+|+++|+.+||++|||++++-+||||+. .++.++.|+++|.+|.+||+||+||++|
T Consensus 9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~-----------------dpd~K~~AE~~F~~i~~AyEVLsDp~kR 71 (546)
T KOG0718|consen 9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHT-----------------DPDQKKAAEEKFQRIQRAYEVLSDPQKR 71 (546)
T ss_pred hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccC-----------------ChhHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 48999999999999999999999999999999985 3567899999999999999999999999
Q ss_pred cccchhhhh
Q 039706 1064 SRYDLEEET 1072 (1166)
Q Consensus 1064 ~~YD~~~~~ 1072 (1166)
.+||.+++.
T Consensus 72 aIYD~~G~q 80 (546)
T KOG0718|consen 72 AIYDNYGEQ 80 (546)
T ss_pred HHHHHhhhc
Confidence 999997763
No 116
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.6e-12 Score=147.92 Aligned_cols=69 Identities=43% Similarity=0.714 Sum_probs=63.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
..||++|||.++++..+||++||++||+|||||++..+ ++|.++|+.|..||+|||||+.|
T Consensus 8 ~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~i-------------------eeat~~F~~i~aAYeVLSdp~eR 68 (508)
T KOG0717|consen 8 RCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRI-------------------EEATQQFQLIQAAYEVLSDPQER 68 (508)
T ss_pred hHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccH-------------------HHHHHHHHHHHHHHHHhcChHhh
Confidence 48999999999999999999999999999999987432 58999999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
..||....
T Consensus 69 ~wyd~hre 76 (508)
T KOG0717|consen 69 AWYDSHRE 76 (508)
T ss_pred hhHHHHHH
Confidence 99998654
No 117
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.29 E-value=5.3e-10 Score=142.01 Aligned_cols=283 Identities=10% Similarity=-0.057 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCchhHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS--GSDVCVDQKIAVEAS 686 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel--~P~n~~a~~~l~Ea~ 686 (1166)
..+..+...|.+.|++++|+..|++. .+.+..+|..+...|.+.|++++|+..|++..+. .|+. .....+..++
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~-~t~~~ll~a~ 335 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ-FTFSIMIRIF 335 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Confidence 34566788999999999999999865 4567789999999999999999999999998764 4542 2333333444
Q ss_pred HHhhhHHhHHHHHHHHHH-------------HHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHH
Q 039706 687 DGLQKAQKVSECMQRSAQ-------------LLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQ 753 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~-------------~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~ 753 (1166)
..+.........+..... ...+.+.|++++|+..|++..+ .+...|..+...|.+.|+.++|++
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHH
Confidence 444333333332222111 1113347888888888887643 245677788888888888888888
Q ss_pred HHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhc
Q 039706 754 LCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLA 833 (1166)
Q Consensus 754 ~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~ 833 (1166)
+|++.++..-. |.. ..+..+..++...|.+++|+.+|+......+
T Consensus 413 lf~~M~~~g~~---------------Pd~---------~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g----------- 457 (697)
T PLN03081 413 MFERMIAEGVA---------------PNH---------VTFLAVLSACRYSGLSEQGWEIFQSMSENHR----------- 457 (697)
T ss_pred HHHHHHHhCCC---------------CCH---------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC-----------
Confidence 88887654211 111 1134456677788888888888887532111
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHH
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKA 913 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A 913 (1166)
.......|..+...|.+.|++++|.+.++++- . ..+..+|..+..++...|+++.|...+++.+++.|++...
T Consensus 458 -~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~-----~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~ 530 (697)
T PLN03081 458 -IKPRAMHYACMIELLGREGLLDEAYAMIRRAP-F-----KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNN 530 (697)
T ss_pred -CCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-C-----CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcc
Confidence 11123345556788889999999998887652 1 2245578888888889999999999999999999988888
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
|..++.+|...|++++|.+.++...+.
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999988877643
No 118
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.27 E-value=6.9e-09 Score=135.43 Aligned_cols=290 Identities=9% Similarity=0.009 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-chhHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDP-DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSD-VCVDQKIAVEAS 686 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP-~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~-n~~a~~~l~Ea~ 686 (1166)
..|..+-.+|...|++++|+..|.++.+... -+...|..+..+|.+.|++++|.+.|+.+.+.... +...+..+...+
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy 517 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3355566778899999999999999988653 35678889999999999999999999998875422 344455555555
Q ss_pred HHhhhHHhHHHHHHHHH-------------HHHHhhcCCCHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHHccCHH
Q 039706 687 DGLQKAQKVSECMQRSA-------------QLLQNKTSNDAEIALGVIDEALFI----SSYSEKLLEMKAEALFMLRKYE 749 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~-------------~~l~~~~~gd~eeALe~lekALel----~P~~~~al~~lA~~y~~lGdye 749 (1166)
....+...+...+.... .+..+...|++++|++.+++.... .|+ ...|..+..+|.+.|+++
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVD 596 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHH
Confidence 54444444433332221 011133578999999999988753 344 467777888899999999
Q ss_pred HHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 750 EVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 750 eAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
+|+++|+.+.+...... ...|..+...|...|++++|+.+|.+.....-.
T Consensus 597 eA~elf~~M~e~gi~p~------------------------~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~------ 646 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGT------------------------PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK------ 646 (1060)
T ss_pred HHHHHHHHHHHcCCCCC------------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------
Confidence 99999998876532110 012455778899999999999999986432111
Q ss_pred hhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--C
Q 039706 830 IPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--D 907 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--d 907 (1166)
.+...+..+...|.+.|++++|++.|.++++.. ...+..+|..+..+|.+.|++++|+..|++.... .
T Consensus 647 -------PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G---~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 647 -------PDEVFFSALVDVAGHAGDLDKAFEILQDARKQG---IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred -------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 123456667788999999999999999998753 2446678999999999999999999999998764 4
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
| +...|..+...|.+.|++++|+..|+++...
T Consensus 717 P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 717 P-TVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 5 4678999999999999999999999988653
No 119
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=5.9e-10 Score=129.36 Aligned_cols=216 Identities=16% Similarity=0.081 Sum_probs=159.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHH
Q 039706 637 IDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEI 716 (1166)
Q Consensus 637 ldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~ee 716 (1166)
.||+++.+|..+|.++...|+.+.|...+.++.+..|.+...... .. ...+.....|++++
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----------------~~---~~a~~~~~~g~~~~ 61 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERER----------------AH---VEALSAWIAGDLPK 61 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHH----------------HH---HHHHHHHHcCCHHH
Confidence 389999999999999999999999999999999887764321111 01 11222334799999
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cCCCCCccccCcccccCccchhhhhhhhhHHHH
Q 039706 717 ALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA-EKNSPPLDANGQSMELDSSESTKHVSFRLWRCC 795 (1166)
Q Consensus 717 ALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~-p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~ 795 (1166)
|+..++++++..|.+..++.. +..+..++++..+...+.+++... +..+. ..+.+.
T Consensus 62 A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~~~~ 118 (355)
T cd05804 62 ALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPD----------------------YWYLLG 118 (355)
T ss_pred HHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCC----------------------cHHHHH
Confidence 999999999999999877776 667777776666665555555431 11111 112245
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCch
Q 039706 796 LIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPF 875 (1166)
Q Consensus 796 lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~ 875 (1166)
.+|.++...|++++|+..+++++...+. ....+..+|.+++..|++++|+.+|.+++...+.....
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~--------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~ 184 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPD--------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML 184 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC--------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch
Confidence 6788999999999999999997554443 24556677999999999999999999999876432223
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC
Q 039706 876 AAICFCNRAAAYKALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 876 ~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP 908 (1166)
....|..+|.++..+|++++|+..|++++...|
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 345677899999999999999999999987666
No 120
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.4e-12 Score=141.56 Aligned_cols=70 Identities=40% Similarity=0.638 Sum_probs=64.6
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+||+...++..+|+++||+.|++|||||++.+ +.|.++|..|++||+||+|+.+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~d--------------------P~A~ekFq~L~eAy~VL~D~~~ 63 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGD--------------------PQAAEKFQELSEAYEVLSDEES 63 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC--------------------hHHHHHHHHHHHHHHHhcCHHH
Confidence 35999999999999999999999999999999999843 4699999999999999999999
Q ss_pred hcccchhhhh
Q 039706 1063 RSRYDLEEET 1072 (1166)
Q Consensus 1063 R~~YD~~~~~ 1072 (1166)
|..||+.+..
T Consensus 64 R~~YDk~~k~ 73 (296)
T KOG0691|consen 64 RAAYDKLRKS 73 (296)
T ss_pred HHHHHHHhhh
Confidence 9999997763
No 121
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=7.5e-09 Score=121.71 Aligned_cols=294 Identities=15% Similarity=0.048 Sum_probs=192.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~ 694 (1166)
-..+...++|++|+..+.++|...|+...+....-.++.++++|++|+...++-..+.-.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~------------------- 79 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN------------------- 79 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-------------------
Confidence 3456778999999999999999999999999999999999999999996554422211110
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcccc--
Q 039706 695 VSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDAN-- 772 (1166)
Q Consensus 695 ~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~-- 772 (1166)
.+ .+..++-.++.+..++|+..++ ..++.+..++..+|.+++++++|++|+..|+.+++...+..+.....
T Consensus 80 ---~~-~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl 152 (652)
T KOG2376|consen 80 ---SF-FFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANL 152 (652)
T ss_pred ---hh-hHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 00 0222333445899999999998 45666778999999999999999999999999987655443221000
Q ss_pred ---C-----cccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhh-hccchHHHHHHh
Q 039706 773 ---G-----QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIP-LAGTVRELLCRK 843 (1166)
Q Consensus 773 ---g-----~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~-L~~~~~~a~~l~ 843 (1166)
+ +.++..+.... . .+..+++.+.++...|+|.+|++.+++++............. -...........
T Consensus 153 ~a~~a~l~~~~~q~v~~v~e-~---syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 153 LAVAAALQVQLLQSVPEVPE-D---SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HHHHHhhhHHHHHhccCCCc-c---hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 0 01111111111 1 123367889999999999999999999844221111000000 011112233456
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHH--------------------------------------------
Q 039706 844 SAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAIC-------------------------------------------- 879 (1166)
Q Consensus 844 ~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a-------------------------------------------- 879 (1166)
.++.++..+|+.++|...|...|..++...|..+.+
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 678999999999999999999888763222221111
Q ss_pred -HHHHHHHHHHhh----------------------------------chhHHHHHHHHHHHhCCCh-HHHHHHHHHHHHH
Q 039706 880 -FCNRAAAYKALR----------------------------------HITDAIADCNLAIALDGNY-LKAISRRATLYEM 923 (1166)
Q Consensus 880 -~~nlA~ay~~lG----------------------------------q~eeAi~~lekALeldP~~-~~A~~~LA~ay~~ 923 (1166)
+.|++...+..+ .+..|+..+...-+-+|.. ....+.++.+...
T Consensus 309 i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 309 IYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 122222222111 2334444555555556666 5678888999999
Q ss_pred hhCHHHHHHHHHHHH
Q 039706 924 IRDYDHAASDFHRLI 938 (1166)
Q Consensus 924 lGdyeeAi~~yekAL 938 (1166)
+|+++.|+..+...+
T Consensus 389 ~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 389 QGNPEVALEILSLFL 403 (652)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999999554
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.23 E-value=1.8e-10 Score=117.55 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=98.3
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
+..+|.++...|++++|+.+|++++.++ |.+..+|+++|.++..+|++++|+..|++++.++|.++.+++++|.++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ----PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4456999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 922 EMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 922 ~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
..+|++++|+..|++++++.|++.+.+
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999999999987755
No 123
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.23 E-value=2e-10 Score=129.07 Aligned_cols=288 Identities=15% Similarity=0.077 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAID------PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeld------P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
.|..+|.+|+.+++|.+|+++-..-|.+. -..+++--+||+++--+|.|++|+.+..+-|.+...
T Consensus 57 IYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~are--------- 127 (639)
T KOG1130|consen 57 IYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARE--------- 127 (639)
T ss_pred HHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHH---------
Confidence 37889999999999999998765444332 234567788999999999999999999887754221
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHh-----------------hcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQN-----------------KTSNDAEIALGVIDEALFISSYS------EKLLEMKAE 740 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~-----------------~~~gd~eeALe~lekALel~P~~------~~al~~lA~ 740 (1166)
+-. ++.+...++.....+... .....++.|+++|..-|++.... ..++-++|.
T Consensus 128 -LgD---rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGN 203 (639)
T KOG1130|consen 128 -LGD---RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGN 203 (639)
T ss_pred -HhH---HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCc
Confidence 111 111111112211111110 00123556677777766654322 246678899
Q ss_pred HHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Q 039706 741 ALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESG 820 (1166)
Q Consensus 741 ~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~ 820 (1166)
.|+.+|+|++||..-+.-|.+....... + ..-..+.++|.+|..+|+++.|+++|+.+
T Consensus 204 TyYlLGdf~~ai~~H~~RL~ia~efGDr---------------A----aeRRA~sNlgN~hiflg~fe~A~ehYK~t--- 261 (639)
T KOG1130|consen 204 TYYLLGDFDQAIHFHKLRLEIAQEFGDR---------------A----AERRAHSNLGNCHIFLGNFELAIEHYKLT--- 261 (639)
T ss_pred eeeeeccHHHHHHHHHHHHHHHHHhhhH---------------H----HHHHhhcccchhhhhhcccHhHHHHHHHH---
Confidence 9999999999999999888886654321 0 00112457999999999999999999986
Q ss_pred CCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHHhhchhHHHH
Q 039706 821 NGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKALRHITDAIA 898 (1166)
Q Consensus 821 ~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~lGq~eeAi~ 898 (1166)
+..++++......+...+.+|+.|.-..+|++||.++.+-|.+.. +.......+++.+|.+|..+|..++|+.
T Consensus 262 -----l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 262 -----LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred -----HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 445667777778888999999999999999999999999888763 2233456677889999999999999999
Q ss_pred HHHHHHHhC-----CC-hHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 899 DCNLAIALD-----GN-YLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 899 ~lekALeld-----P~-~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
+.++.+++. +. ...+..++....+.+|.-+--....+..
T Consensus 337 fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~~te~~ 381 (639)
T KOG1130|consen 337 FAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVDDTELI 381 (639)
T ss_pred HHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCCcHHHH
Confidence 999988763 32 4567777888888887655444444333
No 124
>PLN03077 Protein ECB2; Provisional
Probab=99.23 E-value=4.2e-09 Score=136.92 Aligned_cols=282 Identities=12% Similarity=0.008 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCchhHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS-GSDVCVDQKIAVEASD 687 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel-~P~n~~a~~~l~Ea~~ 687 (1166)
..+..+...|.+.|++++|+..|++..+ .+...|..+...|.+.|++++|+..|++.+.. .|+ ......+..+..
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd-~~t~~~lL~a~~ 500 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN-SVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC-HhHHHHHHHHHh
Confidence 3456678899999999999999987643 45568889999999999999999999998763 343 333333333433
Q ss_pred HhhhHHhHHHHHHHHHH-------------HHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQ-------------LLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~-------------~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
.+.......+....... ...+.+.|++++|+..|+.. +.+...|..+...|...|+.++|+.+
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 34333333332222111 11234589999999999886 55778899999999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
|++..+..-. |... .+..+-.++...|.+++|+.+|+...... .
T Consensus 577 f~~M~~~g~~---------------Pd~~---------T~~~ll~a~~~~g~v~ea~~~f~~M~~~~------------g 620 (857)
T PLN03077 577 FNRMVESGVN---------------PDEV---------TFISLLCACSRSGMVTQGLEYFHSMEEKY------------S 620 (857)
T ss_pred HHHHHHcCCC---------------CCcc---------cHHHHHHHHhhcChHHHHHHHHHHHHHHh------------C
Confidence 9998764221 1111 02334567889999999999999863211 1
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
.......|..+...+.+.|++++|.+.+++.- +. | +..+|..+-.++...++.+.|....+++++++|++...|
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~----p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-IT----P-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CC----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence 11234556777899999999999999998862 22 3 356777777777888999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
..++.+|...|+|++|.+..+...+.
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999999999988877643
No 125
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.23 E-value=8.2e-12 Score=109.33 Aligned_cols=64 Identities=44% Similarity=0.749 Sum_probs=58.9
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhc
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRS 1064 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~ 1064 (1166)
+||++|||++.++.++|+++|+++++++|||+.+.. ...++..|..|++||++|+||.+|+
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~-------------------~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGD-------------------EAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTST-------------------HHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhh-------------------hhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 589999999999999999999999999999997632 0468899999999999999999999
Q ss_pred ccc
Q 039706 1065 RYD 1067 (1166)
Q Consensus 1065 ~YD 1067 (1166)
.||
T Consensus 62 ~YD 64 (64)
T PF00226_consen 62 RYD 64 (64)
T ss_dssp HHH
T ss_pred hcC
Confidence 998
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.22 E-value=1.2e-10 Score=118.73 Aligned_cols=113 Identities=11% Similarity=-0.032 Sum_probs=102.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
..+|.++...|++++|+..|++++..+ +.....+..+|.++...|++++|+..|++++.++ |
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~--------------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~----p 89 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQ--------------PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD----A 89 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----C
Confidence 347889999999999999999984443 4457778889999999999999999999999998 9
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR 925 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG 925 (1166)
.++.+|+++|.++..+|++++|+..|.+++.+.|+++.++..++.+...++
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998877654
No 127
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.20 E-value=1.3e-11 Score=151.81 Aligned_cols=68 Identities=31% Similarity=0.369 Sum_probs=62.3
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||+++|+..+||+|||++|++|||||++. ..|..+|+.|++||+|||||.+
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~---------------------~~A~ekFq~I~EAYeVLSDp~k 630 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG---------------------NEGFHKFKKINEAYQILGDIDK 630 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------------------chHHHHHHHHHHHHHHhCCHHH
Confidence 4699999999999999999999999999999999862 2477899999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||.++.
T Consensus 631 Rk~YD~~G~ 639 (1136)
T PTZ00341 631 KKMYNKFGY 639 (1136)
T ss_pred HHHHhhccc
Confidence 999999765
No 128
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.9e-10 Score=119.11 Aligned_cols=112 Identities=35% Similarity=0.500 Sum_probs=101.2
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc-CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE-SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e-~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
...+..++..|+.+|..|+|++|...|..||.+.|. .......+|.|+|.|+++++.++.||..|.+||+++|.+.+|+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 344666778899999999999999999999998752 2245678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
.+||.+|.++..|++|+.+|+++++++|...+.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 999999999999999999999999999988654
No 129
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.19 E-value=1.9e-09 Score=131.87 Aligned_cols=275 Identities=14% Similarity=0.025 Sum_probs=204.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh----hHHhHHH
Q 039706 622 GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ----KAQKVSE 697 (1166)
Q Consensus 622 G~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~----k~~~~~e 697 (1166)
+....|..+|..++..||.+ ...+|.+......|.+|...+.....+.-+.. .+.++.-.+. +.-.+..
T Consensus 382 ~~l~~as~~Ydn~lSaD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~----slselswc~~~~~ek~mdva~ 454 (1238)
T KOG1127|consen 382 SILSWASICYDNALSADASN---QRAKGLAPIEANVYTDAAITLDLVSSLSFNDD----SLSELSWCLPRALEKMMDVAL 454 (1238)
T ss_pred HHHHHHHHHHHHhhcCChhh---hhhcchhHHHHhhchHHHHHHHHHHHhhcCch----hhhHhhHHHHHhHHhhhhHHH
Confidence 34455666777777777766 55566677777778888777776665541111 0111111111 1111111
Q ss_pred HHHHH---HHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCc
Q 039706 698 CMQRS---AQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQ 774 (1166)
Q Consensus 698 ~~~~a---~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~ 774 (1166)
+.... .....-...++...|+.+|-+++++++....++..+|.+|..--+...|..+|++|.++++.+..+
T Consensus 455 ~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea------ 528 (1238)
T KOG1127|consen 455 LLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA------ 528 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh------
Confidence 11110 000111235678999999999999999999999999999999999999999999999998876544
Q ss_pred ccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCC
Q 039706 775 SMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGR 854 (1166)
Q Consensus 775 ~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~ 854 (1166)
+..++..|....+++.|....-.+-+. .+.....+.|..+|-.|...++
T Consensus 529 -------------------aaa~adtyae~~~we~a~~I~l~~~qk------------a~a~~~k~nW~~rG~yyLea~n 577 (1238)
T KOG1127|consen 529 -------------------AAASADTYAEESTWEEAFEICLRAAQK------------APAFACKENWVQRGPYYLEAHN 577 (1238)
T ss_pred -------------------HHHHHHHhhccccHHHHHHHHHHHhhh------------chHHHHHhhhhhccccccCccc
Confidence 234788899999999998885543111 1112223445557999999999
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHH
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDF 934 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~y 934 (1166)
+..|+..|+.|+..+ |.+..+|..+|.+|...|+|..|++.|.+|..++|.+.-+.+..|.+...+|+|.+|+..+
T Consensus 578 ~h~aV~~fQsALR~d----PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 578 LHGAVCEFQSALRTD----PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred hhhHHHHHHHHhcCC----chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 039706 935 HRLIALLTKQ 944 (1166)
Q Consensus 935 ekALeL~P~~ 944 (1166)
...+......
T Consensus 654 ~~ii~~~s~e 663 (1238)
T KOG1127|consen 654 GLIIYAFSLE 663 (1238)
T ss_pred HHHHHHHHHH
Confidence 9998765444
No 130
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.19 E-value=5e-09 Score=133.22 Aligned_cols=280 Identities=15% Similarity=0.045 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-hhHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV-CVDQKIAVEASD 687 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n-~~a~~~l~Ea~~ 687 (1166)
..|..+..+|.+.|++++|+..|++..+ | +...|..+...|.+.|++++|+..|++.++....- ......+..+..
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 3455677899999999999999988753 3 45678899999999999999999999988754321 112222222222
Q ss_pred HhhhHHhHHHHHHHH-------------HHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 688 GLQKAQKVSECMQRS-------------AQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a-------------~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
.+............. ...-.+.+.|++++|+..|++. .+.+...|..+...|.+.|++++|+.+
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 222222111111110 0111134578999999988875 345677888899999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
|++.....-. +.. ..+..+..+|...|++++|...+.........
T Consensus 313 f~~M~~~g~~---------------pd~---------~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~----------- 357 (697)
T PLN03081 313 YYEMRDSGVS---------------IDQ---------FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP----------- 357 (697)
T ss_pred HHHHHHcCCC---------------CCH---------HHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-----------
Confidence 9887653211 000 11344556677777777777777665332111
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--CCChHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--DGNYLK 912 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--dP~~~~ 912 (1166)
.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.|+.++|++.|++.++. .|+ ..
T Consensus 358 --~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~ 427 (697)
T PLN03081 358 --LDIVANTALVDLYSKWGRMEDARNVFDRMPR-------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HV 427 (697)
T ss_pred --CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HH
Confidence 1122333445566666666666666665542 13445666666666666666666666665553 233 34
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIA 939 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALe 939 (1166)
.+..+..++...|+.++|...|+.+.+
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 455555666666666666666666554
No 131
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.7e-11 Score=128.91 Aligned_cols=70 Identities=40% Similarity=0.650 Sum_probs=64.4
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+.|.+|||.+.++..+|++||+++||+||||+.. ++...+|...|+.|+.||.||+|.++|
T Consensus 14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~------------------eed~~ea~~kFq~l~k~y~iLsDeekR 75 (264)
T KOG0719|consen 14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH------------------EEDKVEATEKFQQLQKAYQILSDEEKR 75 (264)
T ss_pred cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch------------------hhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 48999999999999999999999999999999963 455678999999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||..+.
T Consensus 76 ~~YDetG~ 83 (264)
T KOG0719|consen 76 AVYDETGS 83 (264)
T ss_pred HHHhccCC
Confidence 99998554
No 132
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=2.4e-08 Score=113.49 Aligned_cols=286 Identities=13% Similarity=0.078 Sum_probs=207.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
.+-|..-+..|+|.+|.....++-+-.+.-.-+|+.-|.+.-++|+++.|-.++.++-++.++...
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l-------------- 153 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL-------------- 153 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH--------------
Confidence 445667777899999999999988888888889999999999999999999999999998555221
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
...+..+...+ ..++++.|...++++++..|.++.++....++|+..|+|.+...++.+.-+..--..+-...
T Consensus 154 ----~v~ltrarlll---~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~ 226 (400)
T COG3071 154 ----AVELTRARLLL---NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR 226 (400)
T ss_pred ----HHHHHHHHHHH---hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH
Confidence 11122222233 48999999999999999999999999999999999999999988887765442211110000
Q ss_pred c------Cccccc-Cccchhh----------hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 772 N------GQSMEL-DSSESTK----------HVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 772 ~------g~~l~l-d~~~~~~----------~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
+ +.+-+. +...... ..-........++.-+..+|++++|.+.++.+++...+..+
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L-------- 298 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL-------- 298 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH--------
Confidence 0 000000 0000000 00000111123556678889999999999887654444211
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
..+. -...-+++..=++..++.+... |.++.+++.+|..|++.+.|.+|-.+++.|+...|. ...+
T Consensus 299 -----~~~~----~~l~~~d~~~l~k~~e~~l~~h----~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~ 364 (400)
T COG3071 299 -----CRLI----PRLRPGDPEPLIKAAEKWLKQH----PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDY 364 (400)
T ss_pred -----HHHH----hhcCCCCchHHHHHHHHHHHhC----CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhH
Confidence 1111 2245677888888888888877 778899999999999999999999999999998875 6678
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
..+|.++..+|+..+|.+.+++++.+
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88999999999999999999999854
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.17 E-value=1.4e-09 Score=136.20 Aligned_cols=161 Identities=14% Similarity=0.040 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHH
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWR 793 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr 793 (1166)
..+++..+.....-.|..++++.++|.+...+|++++|...++.++++.|++..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a------------------------- 122 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA------------------------- 122 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH-------------------------
Confidence 3445555555566788999999999999999999999999999999999987543
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
...++.++.+++++++|+..+++++... +..+..+..+|.++.+.|+|++|+++|++++..+
T Consensus 123 ~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~---- 184 (694)
T PRK15179 123 FILMLRGVKRQQGIEAGRAEIELYFSGG--------------SSSAREILLEAKSWDEIGQSEQADACFERLSRQH---- 184 (694)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcC--------------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC----
Confidence 3457888888888888888888874433 3446677778888888888888888888888755
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
|..+.+|.++|.++..+|+.++|...|++|++....-.+.|.++
T Consensus 185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 77788888888888888888888888888888876655555443
No 134
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=6.2e-09 Score=115.49 Aligned_cols=150 Identities=14% Similarity=0.111 Sum_probs=120.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHH
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQ 693 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~ 693 (1166)
+|-|++.+|+|++|+..|.-+...+.-..+.+++||.|++.+|.|.+|.....+| |+++....++..+...+..-.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHH
Confidence 7999999999999999999998877778899999999999999999999877664 666666666666655555544
Q ss_pred hHHHHHHHHHHHHH--------hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 694 KVSECMQRSAQLLQ--------NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 694 ~~~e~~~~a~~~l~--------~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
+.......+...+. .+..-.|++||+.|.++|.-+|....+-..+|.||+++.-|+-+.+.+.-.|...|+.
T Consensus 139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 139 RILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 44433333222211 2335679999999999999999999999999999999999999999999999888876
Q ss_pred CC
Q 039706 766 SP 767 (1166)
Q Consensus 766 ~~ 767 (1166)
.-
T Consensus 219 ti 220 (557)
T KOG3785|consen 219 TI 220 (557)
T ss_pred HH
Confidence 43
No 135
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.15 E-value=8.5e-10 Score=118.58 Aligned_cols=147 Identities=17% Similarity=0.115 Sum_probs=118.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCC----CCchhhh-----hhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHH
Q 039706 796 LIFKSYFTLGRLEEAIAALERHESGN----GGKMLES-----LIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAAL 866 (1166)
Q Consensus 796 lLA~ay~~lGd~eeAl~~lekAl~~~----~~k~le~-----a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kAL 866 (1166)
..+-.|+..|++.......++..... .....+. ...+...+.....|..+|.+|...|++++|+.+|++|+
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al 100 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQAL 100 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456888888887766554432211 0111111 12244556678889999999999999999999999999
Q ss_pred hccccCCchhHHHHHHHHHHH-HHhhc--hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 867 SCTVESHPFAAICFCNRAAAY-KALRH--ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 867 el~~e~~p~~a~a~~nlA~ay-~~lGq--~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
.++ |.++.++.++|.++ ...|+ +++|+..++++++++|+++.+++.+|.++..+|+|++|+..|++++++.|.
T Consensus 101 ~l~----P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 101 QLR----GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HhC----CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 998 89999999999975 67787 599999999999999999999999999999999999999999999999877
Q ss_pred hHH
Q 039706 944 QIE 946 (1166)
Q Consensus 944 ~~e 946 (1166)
+.+
T Consensus 177 ~~~ 179 (198)
T PRK10370 177 RVN 179 (198)
T ss_pred Ccc
Confidence 543
No 136
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.5e-10 Score=128.19 Aligned_cols=110 Identities=29% Similarity=0.427 Sum_probs=96.5
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC-----------CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES-----------HPFAAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~-----------~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
+...+..|+.|++.|+|..|+..|++|+..-... ......++.|+|.||.++++|.+|+..|+++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4456677999999999999999999998754210 11235689999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|++.+|++++|.+|+.+++|+.|+.+|++|+++.|.+..+.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~ 328 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAAR 328 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999999999999999999999999999996543
No 137
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.13 E-value=1.3e-09 Score=117.24 Aligned_cols=125 Identities=15% Similarity=0.134 Sum_probs=108.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHH
Q 039706 621 LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQ 700 (1166)
Q Consensus 621 lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~ 700 (1166)
.++.++++..++++++.+|++..+|+.+|.+|..+|++++|+..|++++++.|++...+..+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA----------------- 114 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALA----------------- 114 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-----------------
Confidence 567799999999999999999999999999999999999999999999999999654322221
Q ss_pred HHHHHHHhhcCCC--HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCC
Q 039706 701 RSAQLLQNKTSND--AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 701 ~a~~~l~~~~~gd--~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~ 766 (1166)
..++ ...|+ +++|+..++++++.+|.+..++.++|.+++.+|+|++|+.++++++++.|...
T Consensus 115 --~aL~--~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 115 --TVLY--YQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred --HHHH--HhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 1111 12455 69999999999999999999999999999999999999999999999988654
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.6e-10 Score=127.12 Aligned_cols=95 Identities=27% Similarity=0.336 Sum_probs=78.8
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
.|..|+..|.++|+++|+++ .+|.|||.+|.++|.|+.|+++|+.||.+||.+.++|.+||.+|+.+
T Consensus 96 ~Y~eAv~kY~~AI~l~P~nA-------------VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELDPTNA-------------VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred hHHHHHHHHHHHHhcCCCcc-------------hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34555555555555555544 44667999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 656 GEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
|++++|++.|+++|+++|++...+..|.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 9999999999999999999865444443
No 139
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.11 E-value=3.3e-08 Score=129.24 Aligned_cols=290 Identities=16% Similarity=0.042 Sum_probs=200.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDF-----LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~-----~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
...+|.++...|++++|+..+++++...|.. ..++..+|.++...|++++|..++++++.......
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g--------- 525 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD--------- 525 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc---------
Confidence 4557889999999999999999999865543 24567889999999999999999999987533210
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC--------hHHHHHHHHHHHHHccCHHHHHHHHHH
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY--------SEKLLEMKAEALFMLRKYEEVIQLCEQ 757 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~--------~~~al~~lA~~y~~lGdyeeAi~~lek 757 (1166)
............ .......|+++.|...+++++.+... ...++..+|.+++..|++++|...+.+
T Consensus 526 -----~~~~~~~~~~~l--a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 526 -----VYHYALWSLLQQ--SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred -----chHHHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 000000011111 11123589999999999999876321 233466789999999999999999999
Q ss_pred HHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchH
Q 039706 758 TFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVR 837 (1166)
Q Consensus 758 ALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~ 837 (1166)
++.+....... .....+..++.++...|++++|...+.++........ .. ...
T Consensus 599 al~~~~~~~~~--------------------~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~------~~-~~~ 651 (903)
T PRK04841 599 GLEVLSNYQPQ--------------------QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR------YH-SDW 651 (903)
T ss_pred hHHhhhccCch--------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc------cc-HhH
Confidence 98875432110 0112235688899999999999999988643111100 00 000
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC------CChH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD------GNYL 911 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld------P~~~ 911 (1166)
...........+...|+.+.|..++.................+..+|.++..+|++++|+..+++++... ...+
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 0001111123445678999999888776643211111122345689999999999999999999999863 2345
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
.++..+|.+|...|++++|...+++|+++...
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 68889999999999999999999999998654
No 140
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.08 E-value=2.2e-09 Score=109.52 Aligned_cols=103 Identities=11% Similarity=0.037 Sum_probs=97.8
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
......++.+|..++..|++++|...|+-+..++ |.+...|+++|.|+..+|+|.+|+..|.+|+.++|+++.+++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 3456677888999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 916 RRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 916 ~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
++|.||+.+|+.+.|+..|+.++.+..
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999874
No 141
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.07 E-value=6e-08 Score=117.76 Aligned_cols=253 Identities=13% Similarity=0.071 Sum_probs=154.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 039706 641 FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGV 720 (1166)
Q Consensus 641 ~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~ 720 (1166)
+.++++..+.++...|++++|+++++.....-.+.. .++..-+.++ ...|++++|...
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~--------------------~~~E~rA~ll--~kLg~~~eA~~~ 60 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKL--------------------AVLEKRAELL--LKLGRKEEAEKI 60 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHH--------------------HHHHHHHHHH--HHcCCHHHHHHH
Confidence 456788889999999999999999987665444311 1111112222 247999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHH
Q 039706 721 IDEALFISSYSEKLLEMKAEALFMLR-----KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCC 795 (1166)
Q Consensus 721 lekALel~P~~~~al~~lA~~y~~lG-----dyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~ 795 (1166)
|..+|..+|++...+..+..++.... ..+....+|++.....|....+ .
T Consensus 61 y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~--------------------------~ 114 (517)
T PF12569_consen 61 YRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP--------------------------R 114 (517)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch--------------------------h
Confidence 99999999999999999888884443 4667788888887777754322 0
Q ss_pred HHHHHHHHcCCHHHHHHHH-HHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 796 LIFKSYFTLGRLEEAIAAL-ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 796 lLA~ay~~lGd~eeAl~~l-ekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
.+...+..-..|...+..| ...+...-.........++..+........+...+...-.......... ....+...
T Consensus 115 rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~---~~~~~~p~ 191 (517)
T PF12569_consen 115 RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGD---DEEKEPPS 191 (517)
T ss_pred HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcc---ccccCCch
Confidence 1111111112333333332 2332222111122222233333222222222222221111000000000 00001111
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
...++++.+|..|..+|++++|+.++++||+..|+.++.|+..|.+|...|++.+|...++.|..+++.+
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 2245678889999999999999999999999999999999999999999999999999999999887665
No 142
>PLN03077 Protein ECB2; Provisional
Probab=99.06 E-value=5.8e-08 Score=126.43 Aligned_cols=277 Identities=10% Similarity=-0.030 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCchhHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS--GSDVCVDQKIAVEAS 686 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel--~P~n~~a~~~l~Ea~ 686 (1166)
..|..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..|++..+. .|+... ...+..+.
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t-~~~ll~a~ 399 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT-IASVLSAC 399 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-HHHHHHHH
Confidence 446667788888888888888888753 234567888888888889999998888877653 355321 11111122
Q ss_pred HHhhhHHhHHHHHHHHHH-------------HHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHH
Q 039706 687 DGLQKAQKVSECMQRSAQ-------------LLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQ 753 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~-------------~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~ 753 (1166)
............+..+.. ...+.+.|++++|+..|++..+ .+...|..+...|...|++++|+.
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHH
Confidence 222222221111111100 0012235566666666655322 233445555555666666666666
Q ss_pred HHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhc
Q 039706 754 LCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLA 833 (1166)
Q Consensus 754 ~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~ 833 (1166)
.|++.+...+.+... +..+-.++...|.++.+...+..++...-.
T Consensus 477 lf~~m~~~~~pd~~t-------------------------~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~---------- 521 (857)
T PLN03077 477 FFRQMLLTLKPNSVT-------------------------LIAALSACARIGALMCGKEIHAHVLRTGIG---------- 521 (857)
T ss_pred HHHHHHhCCCCCHhH-------------------------HHHHHHHHhhhchHHHhHHHHHHHHHhCCC----------
Confidence 666554321100000 111112222233333333332222110000
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--CCChH
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--DGNYL 911 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--dP~~~ 911 (1166)
.+...+..+-..|.+.|++++|...|+.. ..+..+|..+...|.+.|+.++|+..|++.++. .|+ .
T Consensus 522 ---~~~~~~naLi~~y~k~G~~~~A~~~f~~~--------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~ 589 (857)
T PLN03077 522 ---FDGFLPNALLDLYVRCGRMNYAWNQFNSH--------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-E 589 (857)
T ss_pred ---ccceechHHHHHHHHcCCHHHHHHHHHhc--------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-c
Confidence 00111122334555566666666655553 123445555556666666666666666655543 233 2
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIA 939 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALe 939 (1166)
..+..+-.++.+.|++++|...|+.+.+
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 2344444455556666666666665553
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.06 E-value=1.9e-09 Score=107.43 Aligned_cols=107 Identities=20% Similarity=0.223 Sum_probs=99.7
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
+........+|..++..|++++|+..|++++.++ |.+..+|+++|.++..+|++++|+..|++++.++|.++..++
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD----PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF 89 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 3345667778999999999999999999999988 888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 916 RRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 916 ~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.+|.+|..+|++++|+..|++++++.|++..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999887754
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.03 E-value=2.1e-09 Score=125.73 Aligned_cols=103 Identities=29% Similarity=0.358 Sum_probs=97.4
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
+...|..++..|+|++|+.+|++||.++ |.++.+|+++|.+|..+|++++|+.++++||.++|.++.+|+++|.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD----PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 4556899999999999999999999998 888999999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 922 EMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 922 ~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
..+|+|++|+..|++++++.|.+....
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999986643
No 145
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=6.1e-07 Score=106.04 Aligned_cols=331 Identities=12% Similarity=0.045 Sum_probs=197.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH--HHHHHHHHHh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ--KIAVEASDGL 689 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~--~~l~Ea~~~L 689 (1166)
+.+|.|++++++.++|+.+++ .+++....++...|.+++++++|++|+..|+..++.+.++.... ..+..+...+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 689999999999999999998 55777778899999999999999999999999988665532221 1121211111
Q ss_pred hh-----HHhH-----HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC--------C-------hHHHHHHHHHHHHH
Q 039706 690 QK-----AQKV-----SECMQRSAQLLQNKTSNDAEIALGVIDEALFISS--------Y-------SEKLLEMKAEALFM 744 (1166)
Q Consensus 690 ~k-----~~~~-----~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P--------~-------~~~al~~lA~~y~~ 744 (1166)
.- ...+ ..+++.+-. ....|+|.+|++.+++|+.+.- . -..+...+|.+|..
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~---~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACI---LIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 11 1111 112222222 3358999999999999965531 1 12567889999999
Q ss_pred ccCHHHHHHHHHHHHHhccCCCCCccccCc---ccccCccchh------------h-------hhhhhh--HHHHHHHHH
Q 039706 745 LRKYEEVIQLCEQTFHFAEKNSPPLDANGQ---SMELDSSEST------------K-------HVSFRL--WRCCLIFKS 800 (1166)
Q Consensus 745 lGdyeeAi~~lekALel~p~n~~a~~~~g~---~l~ld~~~~~------------~-------~~~~~~--wr~~lLA~a 800 (1166)
+|+.++|...|...+..+|.+.+....... ++..|..... . -+...- ..+.+.+..
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred hcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877653211110 1111111111 0 000000 112333444
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCchhhhh----hh---------------h--ccchHHHHHHhhhhHHHHHcCChHHHH
Q 039706 801 YFTLGRLEEAIAALERHESGNGGKMLESL----IP---------------L--AGTVRELLCRKSAGNEAFQAGRHSEAV 859 (1166)
Q Consensus 801 y~~lGd~eeAl~~lekAl~~~~~k~le~a----~~---------------L--~~~~~~a~~l~~lG~~~~~~G~yeEAi 859 (1166)
.+..+.-+.+.+.....-...+...+... .. . ..........+.++...+.+|+++.|+
T Consensus 317 ~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred HHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 44555555555444332111211111000 00 0 001112345556788889999999999
Q ss_pred HHHHHHHhccc---cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-------CCChHHHHHHHHHHHHHhhCHHH
Q 039706 860 EHYTAALSCTV---ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL-------DGNYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 860 e~y~kALel~~---e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel-------dP~~~~A~~~LA~ay~~lGdyee 929 (1166)
+.+...+.... ..-...+.+-..+-..|+..+..+-|.+.+..|+.. .+..-..+...+..-++-|+-++
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 99983331110 000123334444555677777766677777766653 22222344455666677799999
Q ss_pred HHHHHHHHHHHhhhhHHhh
Q 039706 930 AASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 930 Ai~~yekALeL~P~~~e~~ 948 (1166)
|...|++.++..|.+.+..
T Consensus 477 a~s~leel~k~n~~d~~~l 495 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLL 495 (652)
T ss_pred HHHHHHHHHHhCCchHHHH
Confidence 9999999999988887643
No 146
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.02 E-value=1.7e-10 Score=127.14 Aligned_cols=237 Identities=14% Similarity=0.078 Sum_probs=176.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
+-.+|..|+.+|+|++||.||.+++.++|.++-.+.++|.+|+++..+..|......|+.++..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~---------------- 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL---------------- 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH----------------
Confidence 3458999999999999999999999999999999999999999999999998888877765421
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
...+|..++.+-..+|...+|...|+.+|.+.|++.+
T Consensus 164 ----------------------------------------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E--- 200 (536)
T KOG4648|consen 164 ----------------------------------------YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE--- 200 (536)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH---
Confidence 2234556677777778888888888888888776422
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
|-..|..+..+.++.-. .+ ..+. .+........+...+..|+.++
T Consensus 201 --------------------------LkK~~a~i~Sl~E~~I~-~K---sT~G-----~~~A~Q~~~Q~l~~K~~G~~Fs 245 (536)
T KOG4648|consen 201 --------------------------LKKSLARINSLRERKIA-TK---STPG-----FTPARQGMIQILPIKKPGYKFS 245 (536)
T ss_pred --------------------------HHHHHHHhcchHhhhHH-hh---cCCC-----CCccccchhhhccccCcchhhh
Confidence 11222222222222111 11 1111 1111122223333456689999
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
..+.|+.|+.+|..-+..+ ..+..+-.+ +..|.+.-+++.|+..|.+++.++|.+..+..+++.+---+|...+|
T Consensus 246 k~~~~~~~i~~~~~~~A~~----~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~ 320 (536)
T KOG4648|consen 246 KKAMRSVPVVDVVSPRATI----DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEV 320 (536)
T ss_pred hhhccccceeEeecccccc----CccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhc
Confidence 9999999999999887765 334444444 78899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHH
Q 039706 931 ASDFHRLIALLTKQIE 946 (1166)
Q Consensus 931 i~~yekALeL~P~~~e 946 (1166)
..+++.++.+.|.+..
T Consensus 321 K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 321 KPTKQTAVKVAPAVET 336 (536)
T ss_pred Ccchhheeeecccccc
Confidence 9999999998887644
No 147
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.01 E-value=5.9e-09 Score=130.57 Aligned_cols=135 Identities=11% Similarity=-0.070 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+++++|.+...+|++++|+..++.+++++|++..++..+|.++.+++++++|+..+++++..+|++......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~--- 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK--- 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH---
Confidence 57899999999999999999999999999999999999999999999999999999999999999997554333222
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
++ ...|++++|+++|++++...|+.+.++..+|.++..+|+.++|...|++++.....
T Consensus 163 -----------------~l--~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 163 -----------------SW--DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred -----------------HH--HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 12 23799999999999999999999999999999999999999999999999988553
No 148
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=2e-09 Score=122.25 Aligned_cols=255 Identities=16% Similarity=0.139 Sum_probs=172.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPD-FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~-~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~ 694 (1166)
..++-.|+|..+|..++ ....+|. ..+..+.+.++|+.+|+++..+..+...- .|. ..
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~-l~----------------- 67 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPE-LQ----------------- 67 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCC-CH-----------------
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--Chh-HH-----------------
Confidence 45677899999998887 3334442 35677899999999999987766543311 222 11
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcccc
Q 039706 695 VSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS--SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDAN 772 (1166)
Q Consensus 695 ~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~--P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~ 772 (1166)
.+..+..++. ...+-+.++..++..+... +.++.+....|.++...|++++|++.+.+.- +
T Consensus 68 ---av~~la~y~~--~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~-----~------- 130 (290)
T PF04733_consen 68 ---AVRLLAEYLS--SPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG-----S------- 130 (290)
T ss_dssp ---HHHHHHHHHC--TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT-----C-------
T ss_pred ---HHHHHHHHHh--CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC-----c-------
Confidence 1111112221 1235566676666655333 2456677788889999999999988875430 0
Q ss_pred CcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc
Q 039706 773 GQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA 852 (1166)
Q Consensus 773 g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~ 852 (1166)
+....+...+|+.+++++.|.+.++...+.+.+. ....+..+++.+..
T Consensus 131 ------------------lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~--------------~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 131 ------------------LELLALAVQILLKMNRPDLAEKELKNMQQIDEDS--------------ILTQLAEAWVNLAT 178 (290)
T ss_dssp ------------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH--------------HHHHHHHHHHHHHH
T ss_pred ------------------ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH--------------HHHHHHHHHHHHHh
Confidence 0112346788999999999999999875544432 22222234444444
Q ss_pred C--ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH-HH
Q 039706 853 G--RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY-DH 929 (1166)
Q Consensus 853 G--~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy-ee 929 (1166)
| .+.+|.-.|++..+.. +..+.++..+|.|++.+|+|++|...+.+|+..+|.+++++.+++.+...+|+. +.
T Consensus 179 g~e~~~~A~y~f~El~~~~----~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSDKF----GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp TTTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred CchhHHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 4 6999999999976654 567788999999999999999999999999999999999999999999999998 56
Q ss_pred HHHHHHHHHHHhhhh
Q 039706 930 AASDFHRLIALLTKQ 944 (1166)
Q Consensus 930 Ai~~yekALeL~P~~ 944 (1166)
+.+++.++....|.+
T Consensus 255 ~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 255 AERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHhCCCC
Confidence 667777777777765
No 149
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.99 E-value=7.7e-10 Score=95.38 Aligned_cols=59 Identities=54% Similarity=0.821 Sum_probs=53.3
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
+||.+|||++.++.++|+++|+++++++|||+.+.. ...++..|+.|++||++|+||.+
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-------------------~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-------------------KEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------------------hHHHHHHHHHHHHHHHHHcCCCC
Confidence 799999999999999999999999999999997621 35788999999999999999863
No 150
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.98 E-value=1.4e-09 Score=120.15 Aligned_cols=104 Identities=36% Similarity=0.492 Sum_probs=99.2
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
.++..|+.||++|.|++||.||.+++.++ |.++..+.|+|.+|++++++..|..+|+.|+.++..+.+||.+++.+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~----P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVY----PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccC----CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 36778999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 921 YEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 921 y~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
...+|+..+|.++++.+|+|.|+..+..
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHHHH
Confidence 9999999999999999999999976654
No 151
>PHA03102 Small T antigen; Reviewed
Probab=98.97 E-value=5.2e-10 Score=113.92 Aligned_cols=63 Identities=27% Similarity=0.445 Sum_probs=58.0
Q ss_pred chhhhcccCCCC--CHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 985 DMYLILGVESSV--SVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 985 dyY~iLGl~~~a--s~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
.+|++|||++++ +..+||+|||++|+++||||.+ .+++|++|++||++|+|+.+
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg------------------------~~e~~k~in~Ay~~L~d~~~ 61 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG------------------------DEEKMKELNTLYKKFRESVK 61 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc------------------------hhHHHHHHHHHHHHHhhHHH
Confidence 689999999999 9999999999999999999964 23689999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|..||.++.
T Consensus 62 r~~yd~~g~ 70 (153)
T PHA03102 62 SLRDLDGEE 70 (153)
T ss_pred hccccccCC
Confidence 999999764
No 152
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=1.1e-08 Score=123.00 Aligned_cols=225 Identities=19% Similarity=0.147 Sum_probs=175.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHH
Q 039706 639 PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIAL 718 (1166)
Q Consensus 639 P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeAL 718 (1166)
|..+.....+|.++..+|-...|+..|++.-..+| +..++ ...|+..+|-
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw~~---------------------vi~CY---------~~lg~~~kae 444 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMWDP---------------------VILCY---------LLLGQHGKAE 444 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHH---------------------HHHHH---------HHhcccchHH
Confidence 45566778889999999999999998887432211 11111 1246677777
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHH
Q 039706 719 GVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIF 798 (1166)
Q Consensus 719 e~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA 798 (1166)
....+-++ .|.++.+|..+|.+....--|++|.++.+..-... ...+|
T Consensus 445 ei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA-------------------------------~r~~~ 492 (777)
T KOG1128|consen 445 EINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARA-------------------------------QRSLA 492 (777)
T ss_pred HHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHH-------------------------------HHhhc
Confidence 77777777 56667777777777777766777766655432210 12244
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH
Q 039706 799 KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 799 ~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
...+..++|+++.++++..+. ..+-....|+.+|.++.+.++++.|+++|..++.++ |+++.
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~--------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~----Pd~~e 554 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLE--------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE----PDNAE 554 (777)
T ss_pred cccccchhHHHHHHHHHHHhh--------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC----CCchh
Confidence 555667899999999998633 344456778889999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+|+|++.+|..+++-.+|...+.+|++.+-.++..|.+.-.+....|.+++|+..|.+.+.+...
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999889999999999999999999999999999876443
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.95 E-value=9.7e-08 Score=108.29 Aligned_cols=217 Identities=16% Similarity=0.192 Sum_probs=126.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 039706 647 RAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALF 726 (1166)
Q Consensus 647 ~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALe 726 (1166)
..|.+|...+++++|..+|.++..+. ..+.........+..+..++. ..++++|+.+|++|+.
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~--------------~~~~~~~~Aa~~~~~Aa~~~k---~~~~~~Ai~~~~~A~~ 102 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCY--------------EKLGDKFEAAKAYEEAANCYK---KGDPDEAIECYEKAIE 102 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHH--------------HHTT-HHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHH--------------HHcCCHHHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHH
Confidence 34778888888888888888876531 112222222333333333332 2366666666666643
Q ss_pred hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHc-C
Q 039706 727 ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTL-G 805 (1166)
Q Consensus 727 l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~l-G 805 (1166)
+|...|++..|...+ ..+|.+|... |
T Consensus 103 --------------~y~~~G~~~~aA~~~---------------------------------------~~lA~~ye~~~~ 129 (282)
T PF14938_consen 103 --------------IYREAGRFSQAAKCL---------------------------------------KELAEIYEEQLG 129 (282)
T ss_dssp --------------HHHHCT-HHHHHHHH---------------------------------------HHHHHHHCCTT-
T ss_pred --------------HHHhcCcHHHHHHHH---------------------------------------HHHHHHHHHHcC
Confidence 233444444443332 2355556555 6
Q ss_pred CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC--chh-HHHHHH
Q 039706 806 RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH--PFA-AICFCN 882 (1166)
Q Consensus 806 d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~--p~~-a~a~~n 882 (1166)
++++|+.+|++|.. ..............+..+|.++...++|++|++.|++++....... ... ...+..
T Consensus 130 d~e~Ai~~Y~~A~~--------~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 130 DYEKAIEYYQKAAE--------LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp -HHHHHHHHHHHHH--------HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--------HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 77777777776522 1111111223344566779999999999999999999987532111 222 245677
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCCChH-----HHHHHHHHHHH--HhhCHHHHHHHHHHHHHHh
Q 039706 883 RAAAYKALRHITDAIADCNLAIALDGNYL-----KAISRRATLYE--MIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 883 lA~ay~~lGq~eeAi~~lekALeldP~~~-----~A~~~LA~ay~--~lGdyeeAi~~yekALeL~ 941 (1166)
.+.|++..|++..|...+++....+|... .....+-.++. ....+.+|+..|....+++
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 88899999999999999999999998653 34445555554 3456888888888777664
No 154
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.93 E-value=7.6e-10 Score=133.83 Aligned_cols=67 Identities=39% Similarity=0.641 Sum_probs=61.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||+++++..+||++||+++++||||+.+. ..+..+|++|++||++|+||.+|
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~---------------------~eAeekFqeINEAYEVLSDP~KR 60 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA---------------------PDAASIFAEINEANDVLSNPKKR 60 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHHhCCHHHH
Confidence 389999999999999999999999999999999752 35778999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||.++.
T Consensus 61 a~YD~fG~ 68 (871)
T TIGR03835 61 ANYDKYGH 68 (871)
T ss_pred HHHhhhcc
Confidence 99999764
No 155
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.93 E-value=1.8e-09 Score=91.31 Aligned_cols=55 Identities=55% Similarity=0.780 Sum_probs=50.2
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCC
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSD 1059 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd 1059 (1166)
+||++||+++.++.++|+++|++++++||||+.+.. ..+...|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~--------------------~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--------------------PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999999998621 4688999999999999986
No 156
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=7.6e-07 Score=116.49 Aligned_cols=290 Identities=12% Similarity=0.008 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPD---------FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQK 680 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~---------~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~ 680 (1166)
....++.+++..|++++|...+..+...-+. ...+...+|.++...|++++|..++++++...+.......
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 3456788888999999999999988765321 2345566788899999999999999999986444211000
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHccCHHHHHHH
Q 039706 681 IAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY------SEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 681 ~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~------~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
.. ..... .......|++++|+..+++++..... ....+..+|.+++..|++++|...
T Consensus 491 --------------~~-a~~~l--g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~ 553 (903)
T PRK04841 491 --------------IV-ATSVL--GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYET 553 (903)
T ss_pred --------------HH-HHHHH--HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 00 01111 11123589999999999999876432 124567889999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
+++++.+....... .. ....+.+..+|.+++..|++++|...+++++..... ..
T Consensus 554 ~~~al~~~~~~~~~-------------~~----~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~--------~~- 607 (903)
T PRK04841 554 QEKAFQLIEEQHLE-------------QL----PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN--------YQ- 607 (903)
T ss_pred HHHHHHHHHHhccc-------------cc----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc--------cC-
Confidence 99999875432110 00 001112345788999999999999999987442111 11
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCch-hHHHH--HHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPF-AAICF--CNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~-~a~a~--~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
....+..+..+|.++...|++++|...+.+++.+....... ..... ......+...|+.+.|...+.......+...
T Consensus 608 ~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~ 687 (903)
T PRK04841 608 PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN 687 (903)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc
Confidence 11234455667999999999999999999998764221110 11111 1123445567889999888877654322221
Q ss_pred ----HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 912 ----KAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 912 ----~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
..+..+|.++..+|++++|+..|++++....
T Consensus 688 ~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~ 722 (903)
T PRK04841 688 HFLQGQWRNIARAQILLGQFDEAEIILEELNENAR 722 (903)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2256789999999999999999999998743
No 157
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.91 E-value=1.7e-09 Score=113.25 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=61.8
Q ss_pred chhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 985 DMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 985 dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
+||.+|||++. ++..+|+++|+++++++|||+.... ++..+..|...|+.|++||++|+||.+
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~---------------~~~~~~~a~~~s~~iN~AY~~L~dp~~ 66 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANA---------------SERERLLAVQQAATINDAYQTLKHPLK 66 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCC---------------cHHHHHHHHHHHHHHHHHHHHHCChhH
Confidence 79999999986 6789999999999999999997521 223455688899999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|..|+..+.
T Consensus 67 Ra~Yll~l~ 75 (171)
T PRK05014 67 RAEYLLSLH 75 (171)
T ss_pred HHHHHHHhc
Confidence 999997553
No 158
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=9.5e-07 Score=96.72 Aligned_cols=204 Identities=16% Similarity=0.071 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
-.++.+|.||+...+|..|..+|++.-.+.|...+..+..|..+++.+.+..|+......... |. ........++...
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-~~-L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-PA-LHSRVLQLQAAIK 122 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-HH-HHHHHHHHHHHHh
Confidence 347888888888888888888888888888888888888888888888888888877655432 11 1111111111111
Q ss_pred hhh--HHhHHHH------------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 689 LQK--AQKVSEC------------MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 689 L~k--~~~~~e~------------~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
+.. ......+ +...+++ .++.|+|+.|+.-|+.|++.....+-+-+++|.+++..++|..|+.+
T Consensus 123 Yse~Dl~g~rsLveQlp~en~Ad~~in~gCl--lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~ 200 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSENEADGQINLGCL--LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH 200 (459)
T ss_pred cccccCcchHHHHHhccCCCccchhccchhe--eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence 100 0000000 0111111 24579999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccch----hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSES----TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER 816 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~----~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lek 816 (1166)
..++++..-.+.+.+.+-...--.|-..+ .-+.......+.+.+-++++.++++.|.+.+..
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 99998877666554333222111121111 112222334456678889999999999988765
No 159
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.90 E-value=2.2e-08 Score=99.84 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=88.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 039706 629 SDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQN 708 (1166)
Q Consensus 629 ~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~ 708 (1166)
+.|++++.++|++..+++.+|.+++..|++++|+..|++++.++|.+...+..+ +.. +
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l--------------------a~~--~ 61 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGL--------------------AAC--C 61 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH--------------------HHH--H
Confidence 356777778887777777888888888888888888888777777654322211 111 1
Q ss_pred hcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 709 KTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 709 ~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
...+++++|+..+++++.++|.++..++.+|.+|..+|++++|+..+++++++.|++..
T Consensus 62 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 62 QMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 12467777888888888888888899999999999999999999999999999887643
No 160
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=2.4e-07 Score=100.02 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=49.7
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh---CH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR---DY 927 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG---dy 927 (1166)
.+|+--+||+.+.+.++.- +.+..+|..++.+|...|+|++|.-++++++-+.|.++..+.++|.+++-+| ++
T Consensus 132 a~GK~l~aIk~ln~YL~~F----~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKF----MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HcCCcHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 3444445555555555544 4555555555555555555555555555555555555555555555555443 34
Q ss_pred HHHHHHHHHHHHHhhhhHH
Q 039706 928 DHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e 946 (1166)
+-|..+|.+++++.|.+..
T Consensus 208 ~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 208 ELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHHHHHhChHhHH
Confidence 4455555555555554433
No 161
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.9e-09 Score=116.17 Aligned_cols=66 Identities=50% Similarity=0.784 Sum_probs=61.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhh-hHHHHHHHHHHHHHHhCCCch
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHK-DAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
.+||.+|||.++++..+|+++||++|++||||+++.. . .|++.|+.|++||++|+|+.+
T Consensus 6 ~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~--------------------~~~a~~~f~~i~~Ay~vLsd~~~ 65 (237)
T COG2214 6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGD--------------------PKVAEEKFKEINEAYEILSDPER 65 (237)
T ss_pred hhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------------------hhHHHHHHHHHHHHHHHhhCHHH
Confidence 5899999999999999999999999999999998632 1 588999999999999999999
Q ss_pred hcccchh
Q 039706 1063 RSRYDLE 1069 (1166)
Q Consensus 1063 R~~YD~~ 1069 (1166)
|..||..
T Consensus 66 r~~yd~~ 72 (237)
T COG2214 66 RAEYDKI 72 (237)
T ss_pred HHHhhhh
Confidence 9999985
No 162
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=5.3e-08 Score=105.84 Aligned_cols=179 Identities=16% Similarity=0.080 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHH
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWR 793 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr 793 (1166)
...++..+-+.....|.+..+ ..++..|...|+-+.+..+..+++...|.+...
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~l------------------------- 102 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDREL------------------------- 102 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHH-------------------------
Confidence 344666677777888999888 999999999999999998888877665543211
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
+..+|+..+..|++.+|+..++++... .+.+...|..+|.+|.+.|++++|...|.+|+++.
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l--------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~---- 164 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARL--------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA---- 164 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhcc--------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc----
Confidence 123788889999999999999997443 33456677778999999999999999999999988
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
+..+.++.|+|..|+-.|+++.|..++..+...-+.+..+..+|+.+....|++++|...-.+
T Consensus 165 ~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 888889999999999999999999999999888888899999999999999999988876544
No 163
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=1.1e-06 Score=95.06 Aligned_cols=174 Identities=16% Similarity=0.089 Sum_probs=146.8
Q ss_pred hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhh
Q 039706 708 NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHV 787 (1166)
Q Consensus 708 ~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~ 787 (1166)
....++...|..++++.....|.+..+..+.|..+...|.|++|+++|+..|+-+|.+...
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~------------------- 122 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVI------------------- 122 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHH-------------------
Confidence 3447888999999999988889999999999999999999999999999999988866432
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 788 SFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 788 ~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
+.....+...+|+.-+|++.+..- +..-+.+.++|..++.+|+..|+|++|+-+|++.+-
T Consensus 123 ------~KRKlAilka~GK~l~aIk~ln~Y--------------L~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 123 ------RKRKLAILKAQGKNLEAIKELNEY--------------LDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred ------HHHHHHHHHHcCCcHHHHHHHHHH--------------HHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 223344566788888999888774 334456788889999999999999999999999998
Q ss_pred ccccCCchhHHHHHHHHHHHHHhh---chhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 868 CTVESHPFAAICFCNRAAAYKALR---HITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 868 l~~e~~p~~a~a~~nlA~ay~~lG---q~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
+. |.++.++..+|.+++-+| ++.-|.++|.++|+++|.+..+++.+-.+...+
T Consensus 183 ~~----P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 183 IQ----PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred cC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 87 999999999999998776 477899999999999999999988876665444
No 164
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.86 E-value=2.6e-09 Score=111.24 Aligned_cols=70 Identities=23% Similarity=0.398 Sum_probs=60.1
Q ss_pred cchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.+||.+||+++. ++..+|+++|+++++++|||+... ...+..+...+..|++||++|+||.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~-----------------~~~k~~~~~~s~~in~AY~~L~dp~ 64 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT-----------------LQEKEQNLIIASELNNAYSTLKDAL 64 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------------HHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 389999999986 789999999999999999999742 1234456678999999999999999
Q ss_pred hhcccchhh
Q 039706 1062 KRSRYDLEE 1070 (1166)
Q Consensus 1062 kR~~YD~~~ 1070 (1166)
+|..|+...
T Consensus 65 ~Ra~YlL~l 73 (166)
T PRK01356 65 KRAEYMLLL 73 (166)
T ss_pred HHHHHHHHc
Confidence 999998865
No 165
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=4e-07 Score=106.16 Aligned_cols=158 Identities=22% Similarity=0.154 Sum_probs=133.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCC
Q 039706 634 AVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSND 713 (1166)
Q Consensus 634 ALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd 713 (1166)
+...+|....+++..|..++..|++++|+..+...+...|+|+..+....+ + ....++
T Consensus 298 ~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~--------------------i--~~~~nk 355 (484)
T COG4783 298 AKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGD--------------------I--LLEANK 355 (484)
T ss_pred HHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHH--------------------H--HHHcCC
Confidence 334458888999999999999999999999999999999998653332222 1 224789
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHH
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWR 793 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr 793 (1166)
..+|++.+++++.++|..+.+++++|.+|++.|++.+|+..+...+..+|+++..
T Consensus 356 ~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~------------------------- 410 (484)
T COG4783 356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG------------------------- 410 (484)
T ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH-------------------------
Confidence 9999999999999999999999999999999999999999999999999987653
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
|.+|+.+|-.+|+..+|...+ +..|+-.|+|++|+..+..|.+..
T Consensus 411 w~~LAqay~~~g~~~~a~~A~-------------------------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 411 WDLLAQAYAELGNRAEALLAR-------------------------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhCchHHHHHHH-------------------------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 456999999999988887766 456778899999999999998765
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.82 E-value=6.6e-07 Score=99.38 Aligned_cols=69 Identities=10% Similarity=-0.028 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLR---VQVRAANCHLALGEIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~---A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~ 676 (1166)
+..+|..|..++..|+|++|+..|++++...|.... +.+.+|.+|++++++++|+..|++.+++.|+++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 344677888888889999999999999998887754 448888999999999999999999888888753
No 167
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.82 E-value=4.8e-07 Score=97.74 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~ 676 (1166)
++..+|..|..++..|+|.+|+..|++++...|.. ..+++.+|.+++..|++++|+..|++.++..|.+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 35678899999999999999999999999998865 68999999999999999999999999999999853
No 168
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.82 E-value=1.5e-08 Score=89.43 Aligned_cols=67 Identities=27% Similarity=0.306 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHhh
Q 039706 876 AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR-DYDHAASDFHRLIALLT 942 (1166)
Q Consensus 876 ~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG-dyeeAi~~yekALeL~P 942 (1166)
++.+|..+|.++..+|++++|+.+|+++|+++|+++.+|+++|.+|..+| ++++|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46788899999999999999999999999999999999999999999998 79999999999998876
No 169
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=7.6e-07 Score=107.43 Aligned_cols=211 Identities=15% Similarity=0.056 Sum_probs=164.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
-.+|..++.+|-...|+..|++. ..|-....||..+|+..+|.....+-++ .|.++..+..+.++.....-
T Consensus 402 ~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHH
Confidence 55899999999999999999875 4567778999999999999999888888 44445555555555444333
Q ss_pred HHhHHHHHHH----HHHHHH--hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 692 AQKVSECMQR----SAQLLQ--NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 692 ~~~~~e~~~~----a~~~l~--~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
.+++-++... +..++. ....++|++|..+++..++++|-....|+.+|.+.+++++++.|..+|..++.++|++
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 3333322221 111211 2346899999999999999999999999999999999999999999999999999998
Q ss_pred CCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhh
Q 039706 766 SPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSA 845 (1166)
Q Consensus 766 ~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~l 845 (1166)
..+ |.+++.+|...++..+|...+.+|+..+.. ....|.+.
T Consensus 553 ~ea-------------------------WnNls~ayi~~~~k~ra~~~l~EAlKcn~~--------------~w~iWENy 593 (777)
T KOG1128|consen 553 AEA-------------------------WNNLSTAYIRLKKKKRAFRKLKEALKCNYQ--------------HWQIWENY 593 (777)
T ss_pred hhh-------------------------hhhhhHHHHHHhhhHHHHHHHHHHhhcCCC--------------CCeeeech
Confidence 766 567899999999999999999998654322 22234445
Q ss_pred hHHHHHcCChHHHHHHHHHHHhccc
Q 039706 846 GNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
-.+..+.|.+++|++.|.+.+.+..
T Consensus 594 mlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 594 MLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhhhhhcccHHHHHHHHHHHHHhhh
Confidence 6677899999999999999988753
No 170
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.2e-09 Score=120.77 Aligned_cols=69 Identities=45% Similarity=0.639 Sum_probs=64.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..|.|.+|||+.++++++||+.|||+|.-.||||+.. +.|++.|+.|..||++|+|+.+
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~---------------------~~A~Eafk~Lq~Afevig~~~k 292 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI---------------------PRAEEAFKKLQVAFEVIGDSVK 292 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC---------------------hhHHHHHHHHHHHHHHhcchhh
Confidence 5799999999999999999999999999999999863 5899999999999999999999
Q ss_pred hcccchhhhh
Q 039706 1063 RSRYDLEEET 1072 (1166)
Q Consensus 1063 R~~YD~~~~~ 1072 (1166)
|++||.....
T Consensus 293 R~eYd~e~~k 302 (490)
T KOG0720|consen 293 RKEYDLELKK 302 (490)
T ss_pred hhHHHHHHHH
Confidence 9999986543
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.80 E-value=4.3e-08 Score=87.58 Aligned_cols=97 Identities=29% Similarity=0.364 Sum_probs=90.5
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
+..+|..++..|++++|+..+++++... |....+++.+|.++...+++++|+..|++++.+.|.+..++..+|.++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 5567999999999999999999999987 666789999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHhh
Q 039706 922 EMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 922 ~~lGdyeeAi~~yekALeL~P 942 (1166)
..+|++++|...+++++++.|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 999999999999999998765
No 172
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.1e-09 Score=110.54 Aligned_cols=73 Identities=33% Similarity=0.610 Sum_probs=64.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
-|.|+|||+.+.+++.|||++||+|.+++||||.+.. ..-++.|.+|+.||+.|+|+..|
T Consensus 99 fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~--------------------~~~e~~~~~I~KAY~aLTD~~sr 158 (230)
T KOG0721|consen 99 FDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE--------------------EGDEEFFEAIAKAYQALTDKKSR 158 (230)
T ss_pred CCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc--------------------chhHHHHHHHHHHHHHhcchhhH
Confidence 4899999999999999999999999999999998631 35677899999999999999999
Q ss_pred cccchhhhhhhhh
Q 039706 1064 SRYDLEEETRNTQ 1076 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~ 1076 (1166)
..|.+++.++.++
T Consensus 159 eN~ekYG~PDGpq 171 (230)
T KOG0721|consen 159 ENWEKYGNPDGPQ 171 (230)
T ss_pred HHHHHhCCCCCcc
Confidence 9999988765443
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.77 E-value=1.8e-07 Score=106.11 Aligned_cols=190 Identities=18% Similarity=0.095 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhH
Q 039706 713 DAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLW 792 (1166)
Q Consensus 713 d~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~w 792 (1166)
+|++|...|++| |.+|...++|++|...|.++.......... +....
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~-------------------~~Aa~ 76 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDK-------------------FEAAK 76 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-H-------------------HHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCH-------------------HHHHH
Confidence 566666666665 666777777777777777776664432110 11112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc-CChHHHHHHHHHHHhcccc
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA-GRHSEAVEHYTAALSCTVE 871 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~-G~yeEAie~y~kALel~~e 871 (1166)
.+...+.+|... ++++|+.+|+++. ...........-+..+..+|.+|... +++++|+++|++|+++...
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~--------~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAI--------EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHH--------HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHH--------HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 233345555444 8888888888762 22222333334466677789999998 9999999999999987532
Q ss_pred --CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC------hH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 872 --SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN------YL-KAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 872 --~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~------~~-~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
.......++.++|.++..+|+|++|+..|++++...-+ .. ..++..+.|++.+||+..|...|++....+|
T Consensus 148 e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 148 EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22334678889999999999999999999999875321 12 3567788899999999999999999987766
Q ss_pred hh
Q 039706 943 KQ 944 (1166)
Q Consensus 943 ~~ 944 (1166)
.-
T Consensus 228 ~F 229 (282)
T PF14938_consen 228 SF 229 (282)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.77 E-value=1.1e-07 Score=111.40 Aligned_cols=114 Identities=11% Similarity=0.118 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
+...|..++..|+|.+|+..|.+||+++|++..+|+.+|.+|+.+|++++|+..+++++.++|.+...+..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~--------- 75 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR--------- 75 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH---------
Confidence 46689999999999999999999999999999999999999999999999999999999999986432221
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR 746 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG 746 (1166)
.+.+ +...|+|++|+..|++++.++|.+..++..++.|...+.
T Consensus 76 -----------lg~~--~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 76 -----------KGTA--CMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred -----------HHHH--HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1111 234799999999999999999999999998888876663
No 175
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.77 E-value=5.4e-05 Score=87.71 Aligned_cols=347 Identities=14% Similarity=0.052 Sum_probs=216.4
Q ss_pred hHHHHHHHHHhch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 039706 595 ASAETIAAQEACE--KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672 (1166)
Q Consensus 595 A~a~~~aAIe~~e--~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~ 672 (1166)
|-+-...|++... -..|...|.+-|+......|...+.+|+.+-|.--+.|+..-..-..+|+..-|.+.|++-+...
T Consensus 92 ARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~ 171 (677)
T KOG1915|consen 92 ARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWE 171 (677)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC
Confidence 3344444544332 23466677788888888888888888888888887888877777778888888888888888888
Q ss_pred CCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHH-------HH----hhcCCCHHHHHHHHHHHHHhCCCh---HHHHHHH
Q 039706 673 SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQL-------LQ----NKTSNDAEIALGVIDEALFISSYS---EKLLEMK 738 (1166)
Q Consensus 673 P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~-------l~----~~~~gd~eeALe~lekALel~P~~---~~al~~l 738 (1166)
|+. .++.........+.....+...+.+...+ +. ....|...-|...|++|++.-.++ ..+....
T Consensus 172 P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaF 250 (677)
T KOG1915|consen 172 PDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAF 250 (677)
T ss_pred CcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 873 33444444444444444444333332111 00 234788899999999998865543 3455556
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhccCCCCCc--c-------ccCccccc----------Ccc--chhhhhhhhhHHHHHH
Q 039706 739 AEALFMLRKYEEVIQLCEQTFHFAEKNSPPL--D-------ANGQSMEL----------DSS--ESTKHVSFRLWRCCLI 797 (1166)
Q Consensus 739 A~~y~~lGdyeeAi~~lekALel~p~n~~a~--~-------~~g~~l~l----------d~~--~~~~~~~~~~wr~~lL 797 (1166)
|..-..+..++.|.-+|.-+|..-|.+-... . ..|.-.-+ ... .....+.+..| ..+
T Consensus 251 A~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsW--fdy 328 (677)
T KOG1915|consen 251 AEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSW--FDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHH--HHH
Confidence 6666778889999999999999888762210 0 00000000 000 00001111222 333
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhh-HHHHHcCChHHHHHHHHHHHhccccCCchh
Q 039706 798 FKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAG-NEAFQAGRHSEAVEHYTAALSCTVESHPFA 876 (1166)
Q Consensus 798 A~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG-~~~~~~G~yeEAie~y~kALel~~e~~p~~ 876 (1166)
..+....|+.+.-.+.|++|+..-|...-. ..=.+-+..|.+.+ ..-+...+.+.+.+.|+.+|++-|...-..
T Consensus 329 lrL~e~~g~~~~Ire~yErAIanvpp~~ek-----r~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtF 403 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIANVPPASEK-----RYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTF 403 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHccCCchhHH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchH
Confidence 445556799999999999987654431100 00001122222221 223467788889999999999886666677
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhcc
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQ 950 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~ 950 (1166)
+.+|...|....++.+...|...+-.||-+.|.+ +.....-.+-.++++++.....|++.|+..|.+...|..
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 8888888888888888888888888888777753 333334455567777888888888888888877666633
No 176
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.76 E-value=2.3e-08 Score=88.23 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCC
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG-EIEDASKYFRMCLQSGS 673 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG-d~eeAl~~fekALel~P 673 (1166)
+..|+++|.+++.+|+|++|+.+|.++|+++|+++.+|+++|.+|..+| ++++|+.+|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567889999999999999999999999999999999999999999999 79999999999999987
No 177
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.76 E-value=1.1e-08 Score=107.40 Aligned_cols=74 Identities=28% Similarity=0.452 Sum_probs=61.9
Q ss_pred ccchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCC
Q 039706 983 PLDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDP 1060 (1166)
Q Consensus 983 ~~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~ 1060 (1166)
..+||.+||+++. ++..+|+++|++++++||||+.... +...+..+...+..|++||++|+||
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~---------------~~~e~~~a~~~s~~iN~AY~tL~~p 69 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAA---------------GDAEKRVAMQWATRANEAYQTLRDP 69 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---------------CHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 3699999999985 6789999999999999999997531 2233456677789999999999999
Q ss_pred chhcccchhhh
Q 039706 1061 SKRSRYDLEEE 1071 (1166)
Q Consensus 1061 ~kR~~YD~~~~ 1071 (1166)
.+|..|+..+.
T Consensus 70 ~~Ra~Yll~l~ 80 (176)
T PRK03578 70 LKRARYLLHLR 80 (176)
T ss_pred hhHHHHHHHhc
Confidence 99999998553
No 178
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=5.2e-07 Score=98.27 Aligned_cols=181 Identities=15% Similarity=0.081 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 039706 624 MRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA 703 (1166)
Q Consensus 624 y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~ 703 (1166)
...|+..+-+....+|++..+ ..++..|...|+-+.+..+..+++...|.+......
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~---------------------- 105 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAA---------------------- 105 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHH----------------------
Confidence 334666777778889999999 999999999999999999999887777664221100
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccch
Q 039706 704 QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSES 783 (1166)
Q Consensus 704 ~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~ 783 (1166)
........|++..|+..+.++..+.|.+..+|..+|.+|.++|+.++|...|.+++++.|..+..
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~--------------- 170 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSI--------------- 170 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchh---------------
Confidence 11113357999999999999999999999999999999999999999999999999999977553
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHH
Q 039706 784 TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYT 863 (1166)
Q Consensus 784 ~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~ 863 (1166)
..++|..|+..|+++.|..++..+....+. ......+++.+....|++.+|...-.
T Consensus 171 ----------~nNlgms~~L~gd~~~A~~lll~a~l~~~a--------------d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 171 ----------ANNLGMSLLLRGDLEDAETLLLPAYLSPAA--------------DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ----------hhhHHHHHHHcCCHHHHHHHHHHHHhCCCC--------------chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 467889999999999999999886332221 23334556777778888888876655
Q ss_pred HHH
Q 039706 864 AAL 866 (1166)
Q Consensus 864 kAL 866 (1166)
+-+
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 444
No 179
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.75 E-value=1.1e-08 Score=106.98 Aligned_cols=73 Identities=23% Similarity=0.386 Sum_probs=62.6
Q ss_pred cchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.+||.++|+++. .+..+|+++||+++.++|||+.... +...+..+...|..|++||++|+||.
T Consensus 4 ~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~---------------~~~e~~~a~~~s~~IN~AY~~L~~p~ 68 (173)
T PRK00294 4 PCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADA---------------PEREQRLALERSASLNEAYQTLKSPP 68 (173)
T ss_pred CChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---------------cHHHHHHHHHHHHHHHHHHHHhCChh
Confidence 589999999987 6689999999999999999997531 23345668889999999999999999
Q ss_pred hhcccchhhh
Q 039706 1062 KRSRYDLEEE 1071 (1166)
Q Consensus 1062 kR~~YD~~~~ 1071 (1166)
+|..|+....
T Consensus 69 ~Ra~YlL~l~ 78 (173)
T PRK00294 69 RRARYLLALS 78 (173)
T ss_pred hhHHHHHHhc
Confidence 9999998653
No 180
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.74 E-value=7e-06 Score=93.82 Aligned_cols=249 Identities=19% Similarity=0.086 Sum_probs=167.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPD-FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~-~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
|..=|.+.-.+|+++.|=.++.++-++.++ ...+++.++.+++..|++..|.....++++..|.++....+...++...
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~ 200 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRL 200 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHh
Confidence 333455666778888888888888777333 3456777788888888888888888888888887777777766666666
Q ss_pred hhHHhHHHHHHHHHHHH-------------------H-hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHH
Q 039706 690 QKAQKVSECMQRSAQLL-------------------Q-NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYE 749 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l-------------------~-~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdye 749 (1166)
+.+..+..........- . ....+..+.=..+++..-..--.++.+...+|.-+..+|+++
T Consensus 201 g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~ 280 (400)
T COG3071 201 GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHD 280 (400)
T ss_pred ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChH
Confidence 66555443333221110 0 000111111111222221122245678888999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 750 EVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 750 eAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
+|.+...++++..-+. . + +..+ -....++.+.=++.+++.+...
T Consensus 281 ~A~~~i~~~Lk~~~D~---------------~-L----------~~~~--~~l~~~d~~~l~k~~e~~l~~h-------- 324 (400)
T COG3071 281 EAQEIIEDALKRQWDP---------------R-L----------CRLI--PRLRPGDPEPLIKAAEKWLKQH-------- 324 (400)
T ss_pred HHHHHHHHHHHhccCh---------------h-H----------HHHH--hhcCCCCchHHHHHHHHHHHhC--------
Confidence 9999999999764321 1 0 1111 1234567777777777753333
Q ss_pred hhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 830 IPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
+.....+..+|..+++.+.|.+|..+|+.||+.. ..+..|..+|.++.++|+..+|.+.++.++.+
T Consensus 325 ------~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-----~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 ------PEDPLLLSTLGRLALKNKLWGKASEALEAALKLR-----PSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ------CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3334667788999999999999999999999874 45677888999999999999999999999854
No 181
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.73 E-value=1.8e-07 Score=90.31 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
+..++.+|..++..|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+.+|++++...|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC
Confidence 3567889999999999999999999999999876 578999999999999999999999998887776
No 182
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.4e-07 Score=101.33 Aligned_cols=194 Identities=15% Similarity=0.157 Sum_probs=150.5
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
..+|.+||+++..-.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|.... ++
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q---------------------Yr 81 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ---------------------YR 81 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH---------------------HH
Confidence 567999999999999999999999999999999999999999999999888775321 11
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhh--------------------hhccchHHHHHHhhhhHHHH
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLI--------------------PLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~--------------------~L~~~~~~a~~l~~lG~~~~ 850 (1166)
...+..++..+.+..|+......... ......+. .-.+....+....+.|-+.+
T Consensus 82 ----lY~AQSLY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 ----LYQAQSLYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLY 155 (459)
T ss_pred ----HHHHHHHHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheee
Confidence 23567777788888888776654221 11111111 11222345667788899999
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh----CCC-----------------
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL----DGN----------------- 909 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel----dP~----------------- 909 (1166)
+.|+|++|++-|+.|++.. ...+.+-+++|.|+++.+++..|+++....++. .|.
T Consensus 156 kegqyEaAvqkFqaAlqvs----GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVS----GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred ccccHHHHHHHHHHHHhhc----CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 9999999999999999987 778888999999999999999999998888764 232
Q ss_pred --------hHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 910 --------YLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 910 --------~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
-.+++...+.+++..++++.|.+.+.
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 13567778899999999999887654
No 183
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.73 E-value=1.1e-07 Score=91.84 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=93.8
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHH
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISR 916 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~ 916 (1166)
..++.+|..+...|++++|+..|.+++...+.. +....+++.+|.++...|++++|+..|++++..+|++ +.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 346678999999999999999999999877322 3346789999999999999999999999999998885 678999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 917 RATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+|.++..++++++|+..|+++++..|++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999999999999999999999888644
No 184
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.9e-09 Score=111.37 Aligned_cols=67 Identities=37% Similarity=0.682 Sum_probs=61.1
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.++|++|||.+.++..+|++|||++|++||||+++. +++.++|+.|.+||++|.|.+.|
T Consensus 33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~---------------------~e~k~~F~~iAtayeilkd~e~r 91 (329)
T KOG0722|consen 33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD---------------------PESKKLFVKIATAYEILKDNETR 91 (329)
T ss_pred hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC---------------------chhhhhhhhhhcccccccchhhH
Confidence 489999999999999999999999999999999873 35568999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
..||-..+
T Consensus 92 t~ydyald 99 (329)
T KOG0722|consen 92 TQYDYALD 99 (329)
T ss_pred HhHHHHhc
Confidence 99997554
No 185
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.72 E-value=1.3e-07 Score=99.11 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=83.2
Q ss_pred hccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 832 LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 832 L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
+......+..+..+|..+...|++++|+.+|++++.+.+.. +....++.++|.++..+|++++|+..+.+++.+.|.+.
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 44456677888899999999999999999999999876321 23467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCH
Q 039706 912 KAISRRATLYEMIRDY 927 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdy 927 (1166)
.++..+|.+|..+|+.
T Consensus 107 ~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 107 SALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHHcCCh
Confidence 9999999999988773
No 186
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.71 E-value=2.5e-05 Score=79.85 Aligned_cols=193 Identities=23% Similarity=0.213 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhh
Q 039706 711 SNDAEIALGVIDEALF--ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVS 788 (1166)
Q Consensus 711 ~gd~eeALe~lekALe--l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~ 788 (1166)
.+.+..++..+..++. ..+.....+...+.++..++.+.+++..+..++...+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 131 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA-------------------- 131 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchH--------------------
Confidence 5667777777777765 567777888888999999999999999999988776643111
Q ss_pred hhhHHHHHHHH-HHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 789 FRLWRCCLIFK-SYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 789 ~~~wr~~lLA~-ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
....+. ++...|+++.|+..+.+++...+. .......+...+..+...+++.+|+..+.+++.
T Consensus 132 -----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 132 -----EALLALGALYELGDYEEALELYEKALELDPE-----------LNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 122334 788999999999999987432221 012233344445557888999999999999998
Q ss_pred ccccCCch-hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 868 CTVESHPF-AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 868 l~~e~~p~-~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
.. +. ....+..++.++...+++..|+..+..++...|.....+..++..+...+.+++|...+.+++...|.
T Consensus 196 ~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LN----PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hC----cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 87 55 57889999999999999999999999999999987788888888888777899999999999998776
No 187
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.6e-08 Score=114.18 Aligned_cols=69 Identities=55% Similarity=0.741 Sum_probs=61.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|++.+.++..+|++||+++|++|||||++. . +..|+.+|++|++||++|+|+.+|
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~------------------~-~~~~~~~~~~~~ea~~~ls~~~kr 63 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPS------------------P-KEVAEAKFKEIAEAYEVLSDPKKR 63 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCC------------------c-hhhHHHHHhhhhccccccCCHHHh
Confidence 489999999999999999999999999999999752 1 245666999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
..||.++.
T Consensus 64 ~~~d~~~~ 71 (306)
T KOG0714|consen 64 KIYDQYGE 71 (306)
T ss_pred hhccccCc
Confidence 99999876
No 188
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.68 E-value=8.4e-06 Score=91.55 Aligned_cols=290 Identities=14% Similarity=0.108 Sum_probs=193.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAI----DPDF--LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALel----dP~~--~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
.-++.++..+|.|++++...-..+.. +... .+++.++++.+..+-++.+++.+-+..+.+-...+.....
T Consensus 47 G~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g---- 122 (518)
T KOG1941|consen 47 GCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG---- 122 (518)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc----
Confidence 34556667777777776654443332 2212 3567777777777777777777777766653221100000
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS------EKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~------~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
.............+.++++++.|+.|+.+.... ..++..++.++-.+.++++|+-+..+++
T Consensus 123 -------------q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 123 -------------QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred -------------hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 000001111223567899999999999875322 2577889999999999999999999999
Q ss_pred HhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHH
Q 039706 760 HFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVREL 839 (1166)
Q Consensus 760 el~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a 839 (1166)
++-....- + . ...-++...++.++.+|..+|++-.|.++.+++. +.++......-.+
T Consensus 190 ~lv~s~~l-----------~--d--~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~--------klal~~Gdra~~a 246 (518)
T KOG1941|consen 190 ELVNSYGL-----------K--D--WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM--------KLALQHGDRALQA 246 (518)
T ss_pred HHHHhcCc-----------C--c--hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH--------HHHHHhCChHHHH
Confidence 88553321 0 0 1112333445678999999999999999998862 2333344455566
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhcccc--CCchhHHHHHHHHHHHHHhhchhH-----HHHHHHHHHHhCCC---
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE--SHPFAAICFCNRAAAYKALRHITD-----AIADCNLAIALDGN--- 909 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq~ee-----Ai~~lekALeldP~--- 909 (1166)
..+.-+|.+|...|+.+.|..-|+.|...-.. +.-....++...|.|+..+.-..+ |++.-.+++++...
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~ 326 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGA 326 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhh
Confidence 77788899999999999999999999875422 222334566667777766655555 88888888887543
Q ss_pred ---hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 910 ---YLKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 910 ---~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
-.+.+.+++.+|..+|.-++-...+.++-+..
T Consensus 327 K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 327 KLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 24678899999999998888777777766553
No 189
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=9.2e-07 Score=112.14 Aligned_cols=154 Identities=16% Similarity=0.069 Sum_probs=92.2
Q ss_pred HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcC
Q 039706 726 FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLG 805 (1166)
Q Consensus 726 el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lG 805 (1166)
..+|.+..++..++.+|...+++++|++.++.+++..|+.... ++.+|.+|+..+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~-------------------------yy~~G~l~~q~~ 79 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA-------------------------LYISGILSLSRR 79 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh-------------------------HHHHHHHHHhhc
Confidence 4568888899999999999999999999999888888866443 455777888888
Q ss_pred CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHH
Q 039706 806 RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAA 885 (1166)
Q Consensus 806 d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ 885 (1166)
++.+|... .++ .......++ .++++|...+... +.+-.+++.+|.
T Consensus 80 ~~~~~~lv--~~l----------------------------~~~~~~~~~-~~ve~~~~~i~~~----~~~k~Al~~LA~ 124 (906)
T PRK14720 80 PLNDSNLL--NLI----------------------------DSFSQNLKW-AIVEHICDKILLY----GENKLALRTLAE 124 (906)
T ss_pred chhhhhhh--hhh----------------------------hhcccccch-hHHHHHHHHHHhh----hhhhHHHHHHHH
Confidence 87666555 321 122222233 3444443333322 333445555555
Q ss_pred HHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 886 AYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 886 ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
||.++|++++|...|+++|+++|+++.++.++|..|... +.++|+.++.+|+..
T Consensus 125 ~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 125 AYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555 555555555555544
No 190
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=1.3e-06 Score=102.08 Aligned_cols=128 Identities=20% Similarity=0.097 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
+-.+..++..|++++|+..++..+. ..+.+.+.+-..+.+++..++..+|++.+++++.++ |
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~--------------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~----P 371 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIA--------------AQPDNPYYLELAGDILLEANKAKEAIERLKKALALD----P 371 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----C
Confidence 3456666777777777777766522 233345555556777777777777777777777776 6
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
....++.++|.+|++.|++.+|+..++..+..+|+++..|..||.+|..+|+..+|...+-+.+.+
T Consensus 372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 667777777777777777777777777777777777777777777777777777776666665544
No 191
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.66 E-value=2.7e-07 Score=94.40 Aligned_cols=99 Identities=15% Similarity=0.027 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..+|.+|..++..|++++|+..|+-++.+||.+...|+.||.|+..+|+|++|+..|.+++.++|+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-------------- 101 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-------------- 101 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------------
Confidence 456888999999999999999999999999999999999999999999988888888887665554
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAE 763 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p 763 (1166)
++..+.+.|.|++.+|+.+.|+..|+.++....
T Consensus 102 ------------------------------------------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 102 ------------------------------------------APQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred ------------------------------------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 566777888888888888888888888887764
No 192
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.8e-07 Score=101.47 Aligned_cols=110 Identities=27% Similarity=0.313 Sum_probs=102.4
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
.+..++..|+.|++.++|..|+..|+++|+........++.+|.|+|.|.+.+|+|..|+.+|.+|+.++|.+.+++++=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 56778888999999999999999999999988777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 918 ATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
|.|++.+.++.+|+.+.+..+.++.+....
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 999999999999999999998887766443
No 193
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.65 E-value=3.4e-07 Score=95.52 Aligned_cols=112 Identities=16% Similarity=0.117 Sum_probs=93.8
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHH
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKA 913 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A 913 (1166)
.....+..+..+|..+...|+|++|+..|++++.+.+. .+..+.+|+++|.+|..+|++++|+..|++++.++|.+..+
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~ 108 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQA 108 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 34456777888899999999999999999999988632 23356799999999999999999999999999999999999
Q ss_pred HHHHHHHHH-------HhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 914 ISRRATLYE-------MIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 914 ~~~LA~ay~-------~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+..+|.+|. .+|++++|+.++++++....+...
T Consensus 109 ~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~ 148 (168)
T CHL00033 109 LNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIA 148 (168)
T ss_pred HHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 888888777777777666555443
No 194
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.65 E-value=9.8e-08 Score=87.95 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=73.7
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
..|+|++|+.+|+++++..+.+ + +...++.+|.||+++|+|++|+..+++ +..+|.+...++.+|.++..+|+|++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~-~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTN-P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGT-H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCC-h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3689999999999999988321 1 677888899999999999999999999 888999999999999999999999999
Q ss_pred HHHHHHH
Q 039706 931 ASDFHRL 937 (1166)
Q Consensus 931 i~~yekA 937 (1166)
+..|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999875
No 195
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.9e-07 Score=104.55 Aligned_cols=147 Identities=19% Similarity=0.154 Sum_probs=116.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCC-chhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGG-KMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~-k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
....|..|+..|+|..|...|++++..-.. .....-..-.........+++++.++.++++|.+|+...+++|.++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--- 287 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--- 287 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC---
Confidence 345788999999999999999997541110 0000000001111235568899999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH-HHHHHHHHHHhhhh
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA-ASDFHRLIALLTKQ 944 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA-i~~yekALeL~P~~ 944 (1166)
|.+..+++.+|.+|..+++|+.|+.+|++|++++|.+..+...+..+..+..++.+. .+.|.+++...+..
T Consensus 288 -~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 288 -PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred -CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999998888777665 77788888665443
No 196
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.61 E-value=6.3e-06 Score=92.51 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHH
Q 039706 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAI 811 (1166)
Q Consensus 732 ~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl 811 (1166)
.+++.+++..+.++-++.+++.+....+.+....+.. ++.+ ....++.++..++.+++++
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~----------~~gq----------~~l~~~~Ahlgls~fq~~L 142 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ----------LGGQ----------VSLSMGNAHLGLSVFQKAL 142 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc----------ccch----------hhhhHHHHhhhHHHHHHHH
Confidence 3678889999999999999999998888774433311 1111 1244888999999999999
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc------CCchhHHHHHHHHH
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE------SHPFAAICFCNRAA 885 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e------~~p~~a~a~~nlA~ 885 (1166)
+.|+.|+.... ......-+...+..+|..+-...+|++|+-+..+|+++-.. +......+++.++.
T Consensus 143 esfe~A~~~A~--------~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV 214 (518)
T KOG1941|consen 143 ESFEKALRYAH--------NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV 214 (518)
T ss_pred HHHHHHHHHhh--------ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence 99999854211 11111223445667799999999999999999999886521 12345667888999
Q ss_pred HHHHhhchhHHHHHHHHHHHhC------CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 886 AYKALRHITDAIADCNLAIALD------GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 886 ay~~lGq~eeAi~~lekALeld------P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
++..+|+.-+|.++|++|.++. +.++..+.-+|.+|...|+.+.|..-|+.|+.....
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 9999999999999999998873 456677788999999999999999999999876443
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=8.2e-07 Score=98.90 Aligned_cols=125 Identities=18% Similarity=0.117 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 039706 624 MRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA 703 (1166)
Q Consensus 624 y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~ 703 (1166)
.+.-+.-++..|..+|++.+.|..||.+|+.+|++..|...|.+|+++.|+++.....+.+++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL----------------- 200 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL----------------- 200 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------------
Confidence 566677788889999999999999999999999999999999999999999876554444432
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 704 QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 704 ~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
+.........++...+++++..+|.+..++..+|..++..|+|.+|+..++..+...|.+.+
T Consensus 201 --~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 201 --YYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred --HHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 11123556788999999999999999999999999999999999999999999999887654
No 198
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=0.00014 Score=84.34 Aligned_cols=190 Identities=12% Similarity=-0.026 Sum_probs=141.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHH
Q 039706 721 IDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKS 800 (1166)
Q Consensus 721 lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~a 800 (1166)
|+..+..+|.+.++|+.+-.+....|+.+.-.+.|++|+..-|....- ... .-|.-+|.-+ .-..
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ek------------r~W--~RYIYLWinY-alye 375 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEK------------RYW--RRYIYLWINY-ALYE 375 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHH------------HHH--HHHHHHHHHH-HHHH
Confidence 777888899999999999999999999999999999999765532110 000 0011112111 1112
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHH
Q 039706 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICF 880 (1166)
Q Consensus 801 y~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~ 880 (1166)
-+...+.+.+...|+.++..-|++ ....+..|+..|.-..++.+...|.+.+-.||... |.+- ++
T Consensus 376 Ele~ed~ertr~vyq~~l~lIPHk----------kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c----PK~K-lF 440 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDLIPHK----------KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC----PKDK-LF 440 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCcc----------cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC----Cchh-HH
Confidence 245688999999999987655553 22334445555888889999999999999999877 4332 23
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 881 CNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 881 ~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
-..-.+-.++++++.+...|++-|+..|.+..+|...|.+-..+|+.+.|...|+-|+..
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 333355678999999999999999999999999999999999999999999999998853
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.60 E-value=1.1e-07 Score=82.96 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV 675 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n 675 (1166)
+.+|..++..|+|++|+..|+++++.+|++..+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999999999999999999999999999999999985
No 200
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.6e-07 Score=100.46 Aligned_cols=121 Identities=27% Similarity=0.340 Sum_probs=105.8
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA 918 (1166)
+..+...|+.++...+|..||.+|.+||.++ |..+..|.|+|.||+++++++.+..+|.+|++++|+.+.+++.+|
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~n----P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICIN----PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcC----CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 4456677999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhh
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRL 971 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~L 971 (1166)
..++....|++|+..+++|..+...+.-. . ...+...|+.|+..-
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl~r~~~~~---~-----~~di~~~L~~ak~~~ 130 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSLLREQPFT---F-----GDDIPKALRDAKKKR 130 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhcCCCC---C-----cchHHHHHHHHHhCc
Confidence 99999999999999999999886554321 1 234667777777543
No 201
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=1.6e-06 Score=96.68 Aligned_cols=185 Identities=17% Similarity=0.120 Sum_probs=137.2
Q ss_pred CCCHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSE-KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~-~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
..+|.-|+..++-.+..+.... .+..++|.|++++|+|++|+..|.-+.+. +++++
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~--------------------- 91 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPA--------------------- 91 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCc---------------------
Confidence 6789999999998887765444 67889999999999999999999887763 22221
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh-----------hhhhhhccch-HHHHHHhhhhHHHHHcCChHH
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML-----------ESLIPLAGTV-RELLCRKSAGNEAFQAGRHSE 857 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l-----------e~a~~L~~~~-~~a~~l~~lG~~~~~~G~yeE 857 (1166)
.+ +..++.+++.+|.|.+|.....++....-..-+ +....+.... ...+-.+.++.+.+..-.|.+
T Consensus 92 el--~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQe 169 (557)
T KOG3785|consen 92 EL--GVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQE 169 (557)
T ss_pred cc--chhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHH
Confidence 11 356899999999999999998886331111000 0011111111 112334566777888889999
Q ss_pred HHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 858 AVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 858 Aie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
||+.|++.|.-+ |....+-.++|.||.++.-|+-+.+.+.-.|+..|+.+-|...++..++++
T Consensus 170 AIdvYkrvL~dn----~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 170 AIDVYKRVLQDN----PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHHhcC----hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 999999999766 777777788999999999999999999999999999988887777766654
No 202
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.57 E-value=7.3e-07 Score=79.50 Aligned_cols=65 Identities=26% Similarity=0.291 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
+++++|.+++..|++++|+..++++++..|....+++.+|.++...+++++|+.+|++++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 46788999999999999999999999999988888899999999988888888888888776665
No 203
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.56 E-value=0.00021 Score=72.99 Aligned_cols=239 Identities=23% Similarity=0.240 Sum_probs=172.9
Q ss_pred cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhhhHHhHH
Q 039706 621 LGRMRDALSDCMLAVAIDPD--FLRVQVRAANCHLALGEIEDASKYFRMCLQ--SGSDVCVDQKIAVEASDGLQKAQKVS 696 (1166)
Q Consensus 621 lG~y~eAI~~fekALeldP~--~~~A~~~LA~lyl~lGd~eeAl~~fekALe--l~P~n~~a~~~l~Ea~~~L~k~~~~~ 696 (1166)
.+.+..++..+..++...+. ....+..++..+...+.+..+...+..++. ..+....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 96 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAE------------------- 96 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHH-------------------
Confidence 57788888888888888886 478888999999999999999999988876 2332111
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhccCCCCCccccCcc
Q 039706 697 ECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAE-ALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQS 775 (1166)
Q Consensus 697 e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~-~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~ 775 (1166)
.+...... ....+.+..++..+..++...+.........+. ++...+++++|+..+.+++...|....
T Consensus 97 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------- 165 (291)
T COG0457 97 -ALLNLGLL--LEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNE-------- 165 (291)
T ss_pred -HHHHHHHH--HHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc--------
Confidence 11111111 112456888999999998887776555666666 899999999999999999775542000
Q ss_pred cccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCCh
Q 039706 776 MELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855 (1166)
Q Consensus 776 l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~y 855 (1166)
....+..++..+...++++.|+..+.+++...+.. ....+..++..+...+++
T Consensus 166 --------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 166 --------------LAEALLALGALLEALGRYEEALELLEKALKLNPDD-------------DAEALLNLGLLYLKLGKY 218 (291)
T ss_pred --------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------------chHHHHHhhHHHHHcccH
Confidence 01112334455778899999999999974433321 345566678899999999
Q ss_pred HHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 856 SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 856 eEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
.+|+..+..++... +.....+..++..+...+.+.+|...+.+++...|. +..++..+...
T Consensus 219 ~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 279 (291)
T COG0457 219 EEALEYYEKALELD----PDNAEALYNLALLLLELGRYEEALEALEKALELDPD----LYNLGLALLLL 279 (291)
T ss_pred HHHHHHHHHHHhhC----cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc----hhhhhHHHHHH
Confidence 99999999999987 556677778888888777899999999999999997 44444444433
No 204
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.55 E-value=0.00042 Score=83.16 Aligned_cols=331 Identities=13% Similarity=0.031 Sum_probs=202.4
Q ss_pred CCchhHHHhhhHHhhCcchhH-----HHHHHHHHhchH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHH
Q 039706 576 GDRNSEVDRGQEIKQEPNLAS-----AETIAAQEACEK---WRLSNRAATRMALGRMRDALSDCMLAVAIDP---DFLRV 644 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~-----a~~~aAIe~~e~---~ay~nrA~ayl~lG~y~eAI~~fekALeldP---~~~~A 644 (1166)
.+...+.+.-.-|.++|+... +-....|.-... -.|..+|.-|++.|.+++|...|++++..-- ++..+
T Consensus 208 Sn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~i 287 (835)
T KOG2047|consen 208 SNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQI 287 (835)
T ss_pred chhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHH
Confidence 334455555555666666443 223333332222 2267788888888888888888888887432 22222
Q ss_pred HHHHH-----HHHHHcC-------------ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 039706 645 QVRAA-----NCHLALG-------------EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLL 706 (1166)
Q Consensus 645 ~~~LA-----~lyl~lG-------------d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l 706 (1166)
+-..+ .+...++ +++-.+..|+..+...|-.. .....-++...+.+++.+..
T Consensus 288 fd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l-------NsVlLRQn~~nV~eW~kRV~--- 357 (835)
T KOG2047|consen 288 FDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL-------NSVLLRQNPHNVEEWHKRVK--- 357 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH-------HHHHHhcCCccHHHHHhhhh---
Confidence 21111 1111111 12233333444433333200 00000011111222222221
Q ss_pred HhhcCCCHHHHHHHHHHHHH-hCCCh-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCc
Q 039706 707 QNKTSNDAEIALGVIDEALF-ISSYS-----EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDS 780 (1166)
Q Consensus 707 ~~~~~gd~eeALe~lekALe-l~P~~-----~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~ 780 (1166)
...++..+-+..|.+|+. ++|.. ..+|...|..|...|+.+.|...++++++..=..
T Consensus 358 --l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~--------------- 420 (835)
T KOG2047|consen 358 --LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT--------------- 420 (835)
T ss_pred --hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc---------------
Confidence 125778888999998875 45543 4789999999999999999999999998763211
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhh---hhcc-chHHHHHHhhhhHHHHHcCChH
Q 039706 781 SESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLI---PLAG-TVRELLCRKSAGNEAFQAGRHS 856 (1166)
Q Consensus 781 ~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~---~L~~-~~~~a~~l~~lG~~~~~~G~ye 856 (1166)
+. -....|+..|..-+...+++.|+.++++|......+.+...- +... -.+.+..|...+...-..|-++
T Consensus 421 --v~----dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 421 --VE----DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred --hH----HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 11 011235667888888999999999999987644442211111 1110 1122333444477777888899
Q ss_pred HHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--CChHHHHHH---HHHHHHHhhCHHHHH
Q 039706 857 EAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD--GNYLKAISR---RATLYEMIRDYDHAA 931 (1166)
Q Consensus 857 EAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--P~~~~A~~~---LA~ay~~lGdyeeAi 931 (1166)
.-...|++.|++- -..+.+-.|.|..+..-.-+++|.+.|++.|.+. |.-.+.|.. .....+.--..+.|.
T Consensus 495 stk~vYdriidLr----iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 495 STKAVYDRIIDLR----IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 9999999999876 6677888899999999999999999999999997 444455443 333334445789999
Q ss_pred HHHHHHHHHhhh
Q 039706 932 SDFHRLIALLTK 943 (1166)
Q Consensus 932 ~~yekALeL~P~ 943 (1166)
..|++||+..|-
T Consensus 571 dLFEqaL~~Cpp 582 (835)
T KOG2047|consen 571 DLFEQALDGCPP 582 (835)
T ss_pred HHHHHHHhcCCH
Confidence 999999998883
No 205
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.53 E-value=3.9e-07 Score=102.21 Aligned_cols=64 Identities=34% Similarity=0.474 Sum_probs=54.7
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCC
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSD 1059 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd 1059 (1166)
..++|.+||+.++++.++||++||+++++||||+.... ..+++..+.|+++|++|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~-------------g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAK-------------GLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCC-------------CCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999997421 12345567899999999999999975
No 206
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.53 E-value=2.4e-06 Score=89.66 Aligned_cols=118 Identities=12% Similarity=0.052 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 606 CEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 606 ~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
...++++++|..|...|++++|+.+|++++.+.|+. ..+++.+|.+|..+|++++|+.+|++++.+.|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 344678999999999999999999999999987764 57899999999999999999999999999999876655555
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh
Q 039706 683 VEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS 731 (1166)
Q Consensus 683 ~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~ 731 (1166)
..++..+.+..........+ ...+.+|+.++++++..+|.+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A--------~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA--------EALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH--------HHHHHHHHHHHHHHHhhCchh
Confidence 44444433322221111111 233667788888888888765
No 207
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.52 E-value=4.9e-06 Score=84.88 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=89.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYS---EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKH 786 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~---~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~ 786 (1166)
..+++..+...++..+...|.. ..+.+.+|.+++..|++++|+..|+.++...|+..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-------------------- 82 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-------------------- 82 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH--------------------
Confidence 3788888888899999888877 56778899999999999999999999988654321
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHH
Q 039706 787 VSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAAL 866 (1166)
Q Consensus 787 ~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kAL 866 (1166)
+.......++.+++..|++++|+..++.. .........+..+|.++...|++++|+..|++||
T Consensus 83 --l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 83 --LKPLARLRLARILLQQGQYDEALATLQQI---------------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 11122355888889999999999988662 1112233445557888888888888888888875
No 208
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.52 E-value=1.5e-06 Score=106.23 Aligned_cols=138 Identities=12% Similarity=0.022 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHc--CC
Q 039706 607 EKWRLSNRAATRMALGR---MRDALSDCMLAVAIDPDFLRVQVRAANCHLALGE--------IEDASKYFRMCLQS--GS 673 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~---y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd--------~eeAl~~fekALel--~P 673 (1166)
+++.+|.+|..|+..+. +..|+.+|++|++++|+++.+|..++.+|..... ...|.....+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 34557889999987765 8899999999999999999999999998866432 34455555555443 22
Q ss_pred CchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHH
Q 039706 674 DVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQ 753 (1166)
Q Consensus 674 ~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~ 753 (1166)
..+.. +... .+.....|++++|...+++|+.++| +..+|..+|.++...|++++|++
T Consensus 418 ~~~~~-------------------~~al---a~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 418 VLPRI-------------------YEIL---AVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred CChHH-------------------HHHH---HHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 21110 0001 1112236999999999999999999 57899999999999999999999
Q ss_pred HHHHHHHhccCCCC
Q 039706 754 LCEQTFHFAEKNSP 767 (1166)
Q Consensus 754 ~lekALel~p~n~~ 767 (1166)
.|++|+.++|..+.
T Consensus 475 ~~~~A~~L~P~~pt 488 (517)
T PRK10153 475 AYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHhcCCCCch
Confidence 99999999997653
No 209
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=5.9e-07 Score=93.72 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=77.8
Q ss_pred chhHHHHHHHHHhchH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 039706 593 NLASAETIAAQEACEK-------WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYF 665 (1166)
Q Consensus 593 ~~A~a~~~aAIe~~e~-------~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~f 665 (1166)
.-|...|..||+.||. ..|.|||.++++++.+..||.+|.+||+++|.+.+|+.++|.+|..+..|++|+..|
T Consensus 112 eeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDy 191 (271)
T KOG4234|consen 112 EEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDY 191 (271)
T ss_pred HHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3466777888888876 448999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchhH
Q 039706 666 RMCLQSGSDVCVD 678 (1166)
Q Consensus 666 ekALel~P~n~~a 678 (1166)
+++++++|....+
T Consensus 192 Kki~E~dPs~~ea 204 (271)
T KOG4234|consen 192 KKILESDPSRREA 204 (271)
T ss_pred HHHHHhCcchHHH
Confidence 9999999985443
No 210
>PRK15331 chaperone protein SicA; Provisional
Probab=98.51 E-value=1.2e-06 Score=90.15 Aligned_cols=100 Identities=14% Similarity=0.050 Sum_probs=93.7
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
.......+..|..++..|+|++|...|+-+..++ +.+...|..+|.|+..+++|++|+..|..|..++++++...+
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d----~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD----FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 3456667778999999999999999999998888 888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHH
Q 039706 916 RRATLYEMIRDYDHAASDFHRLIA 939 (1166)
Q Consensus 916 ~LA~ay~~lGdyeeAi~~yekALe 939 (1166)
..|.||+.+|+...|+..|+.++.
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999997
No 211
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.49 E-value=3.8e-07 Score=79.60 Aligned_cols=63 Identities=21% Similarity=0.151 Sum_probs=46.5
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 882 NRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 882 nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.+|..++..|++++|+..|+++++.+|.++.+++.+|.++..+|++++|+..|++++++.|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777777777777777777777777777777777777765
No 212
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.47 E-value=3.6e-05 Score=85.58 Aligned_cols=170 Identities=7% Similarity=-0.052 Sum_probs=113.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKL---LEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKH 786 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~a---l~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~ 786 (1166)
..|+|++|+..|++++...|..+.+ .+++|.+|+++++|++|+..+++.++..|+++..
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~------------------ 105 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------------ 105 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch------------------
Confidence 4799999999999999999987644 4899999999999999999999999999988653
Q ss_pred hhhhhHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 787 VSFRLWRCCLIFKSYFTLG---------------R---LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 787 ~~~~~wr~~lLA~ay~~lG---------------d---~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
.+.++.+|.+++.++ + ..+|+..|++.+..-|+...
T Consensus 106 ----~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y---------------------- 159 (243)
T PRK10866 106 ----DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY---------------------- 159 (243)
T ss_pred ----HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh----------------------
Confidence 122455666654443 1 23455556554443333110
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHhh
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISRRATLYEMIR 925 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~LA~ay~~lG 925 (1166)
..+|...+..+- ...+.--+.+|..|.+.|.|..|+.-++.+++..|+. .++++.+..+|..+|
T Consensus 160 ------a~~A~~rl~~l~-------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg 226 (243)
T PRK10866 160 ------TTDATKRLVFLK-------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQ 226 (243)
T ss_pred ------HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcC
Confidence 111111111110 1112222356777778888888888888888777653 567788888888888
Q ss_pred CHHHHHHHHHH
Q 039706 926 DYDHAASDFHR 936 (1166)
Q Consensus 926 dyeeAi~~yek 936 (1166)
..++|......
T Consensus 227 ~~~~a~~~~~~ 237 (243)
T PRK10866 227 LNAQADKVAKI 237 (243)
T ss_pred ChHHHHHHHHH
Confidence 88887776543
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.46 E-value=2e-05 Score=85.10 Aligned_cols=163 Identities=18% Similarity=0.089 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhh
Q 039706 711 SNDAEIALGVIDEALFISSY---SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHV 787 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~---~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~ 787 (1166)
.|+|.+|+..|++++...|. .+.+++.+|.+++..++|++|+..+++.+...|..+..
T Consensus 18 ~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------------- 78 (203)
T PF13525_consen 18 QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------------- 78 (203)
T ss_dssp CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-------------------
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-------------------
Confidence 56666666666666655543 35778888899999999999999999999888876432
Q ss_pred hhhhHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChH
Q 039706 788 SFRLWRCCLIFKSYFTL-----------GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHS 856 (1166)
Q Consensus 788 ~~~~wr~~lLA~ay~~l-----------Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~ye 856 (1166)
.+.++.+|.+++.+ ....+|+..|+..+..-|+. .-..
T Consensus 79 ---~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S----------------------------~y~~ 127 (203)
T PF13525_consen 79 ---DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS----------------------------EYAE 127 (203)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS----------------------------TTHH
T ss_pred ---hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc----------------------------hHHH
Confidence 11234455554433 22345555555543322221 1111
Q ss_pred HHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHhhCHHHH
Q 039706 857 EAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 857 EAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~LA~ay~~lGdyeeA 930 (1166)
+|...+..+- ...+.--+.+|..|.+.|.|..|+..++.+|+..|+. .+++..++.+|..+|..+.|
T Consensus 128 ~A~~~l~~l~-------~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 128 EAKKRLAELR-------NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 2222111111 1112223446777888888888888888888887764 35677788888888877744
No 214
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.46 E-value=9.2e-05 Score=88.55 Aligned_cols=273 Identities=13% Similarity=0.072 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH-HHHHhhcCCCHHHHHHH
Q 039706 642 LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA-QLLQNKTSNDAEIALGV 720 (1166)
Q Consensus 642 ~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~-~~l~~~~~gd~eeALe~ 720 (1166)
...|..||..|.+.|.++.|...|++++..--.. .+-.....++..+...--... +..+. ........-+++-.+..
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv-rDFt~ifd~Ya~FEE~~~~~~-me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV-RDFTQIFDAYAQFEESCVAAK-MELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh-hhHHHHHHHHHHHHHHHHHHH-HhhhhhcccChhhhhhHHHHHHH
Confidence 4578999999999999999999999999743221 111112222222221110000 00000 00000111234444555
Q ss_pred HHHHH------------HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hccCCCCCccccCcccccCccchhhhh
Q 039706 721 IDEAL------------FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFH-FAEKNSPPLDANGQSMELDSSESTKHV 787 (1166)
Q Consensus 721 lekAL------------el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALe-l~p~n~~a~~~~g~~l~ld~~~~~~~~ 787 (1166)
|+.++ ..+|.+..-|..+ +-+..++..+-+..|.+|+. .+|..... .
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~G------------------s 385 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVG------------------S 385 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCC------------------C
Confidence 55544 4456666655554 44557889999999998875 34543321 0
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 788 SFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 788 ~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
...+ |..+|..|...|+++.|...++++....-. .-...+..|.+-|..-++..+++.|+.+.++|..
T Consensus 386 ~~~L--w~~faklYe~~~~l~~aRvifeka~~V~y~----------~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 386 PGTL--WVEFAKLYENNGDLDDARVIFEKATKVPYK----------TVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred hhhH--HHHHHHHHHhcCcHHHHHHHHHHhhcCCcc----------chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 1122 456899999999999999999997442221 1122355666678888999999999999999986
Q ss_pred ccc--------cCCch------hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 868 CTV--------ESHPF------AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 868 l~~--------e~~p~------~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
+-. +..|- ...+|...+.....+|-++.....|+++|.+.--.+....+.|..+....-+++|.+.
T Consensus 454 vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 454 VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKA 533 (835)
T ss_pred CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 531 11221 2456777788888889999999999999999888889999999999999999999999
Q ss_pred HHHHHHHhh--hhHHhh
Q 039706 934 FHRLIALLT--KQIEKS 948 (1166)
Q Consensus 934 yekALeL~P--~~~e~~ 948 (1166)
|++.+.+++ ...+.|
T Consensus 534 YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 534 YERGISLFKWPNVYDIW 550 (835)
T ss_pred HHcCCccCCCccHHHHH
Confidence 999998864 344555
No 215
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=8.4e-06 Score=83.11 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
.|..+...+..+++..+...++..+.-.|+. ..+++.+|.+++..|++++|...|+.++...|+.... .+
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~--~~----- 86 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK--PL----- 86 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH--HH-----
Confidence 4455666667999999999999999999988 6788999999999999999999999999977653110 00
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
..+..+.. ....|++++|+..++. +.-.+..+.++..+|.+|+.+|++++|+..|+++|
T Consensus 87 ---------a~l~LA~~---~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 87 ---------ARLRLARI---LLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---------HHHHHHHH---HHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 01111112 2348999999999976 44456677899999999999999999999999875
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.45 E-value=2e-06 Score=96.42 Aligned_cols=104 Identities=10% Similarity=-0.009 Sum_probs=89.9
Q ss_pred HhhhhHHH-HHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC---hHHHHHHH
Q 039706 842 RKSAGNEA-FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN---YLKAISRR 917 (1166)
Q Consensus 842 l~~lG~~~-~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~---~~~A~~~L 917 (1166)
.+..+..+ +..|+|++|+..|+..+...|.. +..+.+++++|.+|+..|++++|+..|.+++...|+ .+++++.+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34445554 56799999999999999988433 344689999999999999999999999999999877 57899999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 918 ATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|.+|..+|++++|+..|+++++.+|+...
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 99999999999999999999999988643
No 217
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.44 E-value=2.3e-07 Score=90.02 Aligned_cols=51 Identities=27% Similarity=0.468 Sum_probs=45.8
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhC
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLS 1058 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLs 1058 (1166)
.++|++||+.+.++.++|+++||++++++|||+.+ ....|++|++||++|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG------------------------s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNGG------------------------STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC------------------------CHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999953 2357899999999984
No 218
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=1e-05 Score=85.66 Aligned_cols=103 Identities=17% Similarity=0.019 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..++.||..|-.+|-+.-|.-+|.++|.+.|+-+.++..+|.-+...|+|+.|.+.|...++++|.+..+
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya---------- 135 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA---------- 135 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHH----------
Confidence 4579999999999999999999999999999999999999999999999999999999999999985321
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHH
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEK 733 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~ 733 (1166)
...+.+..+-.|+|.-|.+-+.+-.+.+|.+|-
T Consensus 136 ------------~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 136 ------------HLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ------------HhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 111222233468888888888888888888763
No 219
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.44 E-value=1.8e-06 Score=98.30 Aligned_cols=229 Identities=16% Similarity=0.064 Sum_probs=152.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
.+.++++|+.+|++...+...... .+....+...++..+....+-+.++..++..+.-.... .
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~-~------------- 100 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGE-S------------- 100 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS----C-------------
T ss_pred HHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhcccc-c-------------
Confidence 345788999999999887666442 23345566667766655456666666555443221110 0
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
...+ ....+......|++++|+..+.+. .+.+.......+|+.+++++.|...++.+-+++.+..
T Consensus 101 -----~~~~-~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~---- 165 (290)
T PF04733_consen 101 -----NEIV-QLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI---- 165 (290)
T ss_dssp -----HHHH-HHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH----
T ss_pred -----cHHH-HHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH----
Confidence 0011 111112234579999999888764 5678888899999999999999999988776543210
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHH--HHHHcC--CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhh
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFK--SYFTLG--RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAG 846 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~--ay~~lG--d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG 846 (1166)
...++. +.+..| .+.+|.-.|++.....+ .....+..++
T Consensus 166 -----------------------l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~--------------~t~~~lng~A 208 (290)
T PF04733_consen 166 -----------------------LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG--------------STPKLLNGLA 208 (290)
T ss_dssp -----------------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----------------SHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC--------------CCHHHHHHHH
Confidence 122333 334444 69999999998533221 2345567789
Q ss_pred HHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhch-hHHHHHHHHHHHhCCChHH
Q 039706 847 NEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHI-TDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 847 ~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~-eeAi~~lekALeldP~~~~ 912 (1166)
.+++.+|+|++|.+.+.+|+..+ |.++.++.|++.+...+|+. +.+.+++.+....+|+++-
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~----~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKD----PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999877 88999999999999999998 4566677887778898764
No 220
>PHA02624 large T antigen; Provisional
Probab=98.43 E-value=1.9e-07 Score=112.60 Aligned_cols=59 Identities=24% Similarity=0.443 Sum_probs=54.7
Q ss_pred cchhhhcccCCCC--CHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESSV--SVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~a--s~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.++|++||+++.+ +..+||++||++|++|||||.+ ++++|++|++||++|+|+.
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG------------------------deekfk~Ln~AYevL~d~~ 66 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG------------------------DEEKMKRLNSLYKKLQEGV 66 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC------------------------cHHHHHHHHHHHHHHhcHH
Confidence 3899999999999 9999999999999999999953 2468999999999999999
Q ss_pred hhccc
Q 039706 1062 KRSRY 1066 (1166)
Q Consensus 1062 kR~~Y 1066 (1166)
+|.+|
T Consensus 67 k~~r~ 71 (647)
T PHA02624 67 KSARQ 71 (647)
T ss_pred Hhhhc
Confidence 99999
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=98.42 E-value=6.1e-06 Score=96.96 Aligned_cols=134 Identities=13% Similarity=0.014 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCC
Q 039706 610 RLSNRAATRMALG---RMRDALSDCMLAV---AIDPDFLRVQVRAANCHLAL---------GEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 610 ay~nrA~ayl~lG---~y~eAI~~fekAL---eldP~~~~A~~~LA~lyl~l---------Gd~eeAl~~fekALel~P~ 674 (1166)
-+|.||...+..+ ....|+..|.+|+ .++|.++.+|..+|.|+... .+..+|....++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 5578888887766 4578999999999 99999999999999999865 2456899999999999999
Q ss_pred chhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 675 VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 675 n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
++.+...+.-+ + ...++++.|+..|++|+.++|+.+.+++..|.++...|+.++|++.
T Consensus 337 Da~a~~~~g~~--------------------~--~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 337 DGKILAIMGLI--------------------T--GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred CHHHHHHHHHH--------------------H--HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 86654333211 1 1256799999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC
Q 039706 755 CEQTFHFAEKN 765 (1166)
Q Consensus 755 lekALel~p~n 765 (1166)
+++++++.|..
T Consensus 395 i~~alrLsP~~ 405 (458)
T PRK11906 395 IDKSLQLEPRR 405 (458)
T ss_pred HHHHhccCchh
Confidence 99999998854
No 222
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.40 E-value=3.9e-06 Score=94.13 Aligned_cols=104 Identities=13% Similarity=0.030 Sum_probs=82.5
Q ss_pred HHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 609 WRLSNRAATR-MALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 609 ~ay~nrA~ay-l~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
..+|..|..+ +..|+|++|+..|+..+...|+. +.+++.+|.+|+..|++++|+..|++++...|++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s--------- 213 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS--------- 213 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------
Confidence 4456677776 56799999999999999999988 5899999999999999999999999999988873
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
|..+++++.+|.++..+|++++|+..|+++++..|+
T Consensus 214 --------------------------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 214 --------------------------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred --------------------------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 233455556666666666677777766666666665
Q ss_pred C
Q 039706 765 N 765 (1166)
Q Consensus 765 n 765 (1166)
.
T Consensus 250 s 250 (263)
T PRK10803 250 T 250 (263)
T ss_pred C
Confidence 4
No 223
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=2.8e-05 Score=94.29 Aligned_cols=274 Identities=14% Similarity=0.056 Sum_probs=147.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH------HHHhh
Q 039706 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA------SDGLQ 690 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea------~~~L~ 690 (1166)
.|...|.|++|++..+.-=++ ..-..|++.|.-+...++.+.|+++|+++-.. . -....++.+- +..-.
T Consensus 835 lyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h--a-fev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVH--A-FEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh--H-HHHHHHHHhChHHHHHHHHhc
Confidence 444555555555544322111 12357889999999999999999999986321 1 0011111111 11111
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
+-..+..+|. .++. ..|+.+.||.+|..|- -|+.+..+++-+|+.++|.++.++.-..
T Consensus 910 ~d~~L~~WWg---qYlE--S~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA~esgd~--------- 967 (1416)
T KOG3617|consen 910 RDESLYSWWG---QYLE--SVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIAEESGDK--------- 967 (1416)
T ss_pred cchHHHHHHH---HHHh--cccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHHHhcccH---------
Confidence 1122222222 2322 4788888888888763 3566677777788888887766543211
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC------CCchhh-hhhh--hccchH---H
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGN------GGKMLE-SLIP--LAGTVR---E 838 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~------~~k~le-~a~~--L~~~~~---~ 838 (1166)
..++.||+.|...|++.+|+..|.+|..-. ..+.++ .+.. +..... .
T Consensus 968 ---------------------AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~ 1026 (1416)
T KOG3617|consen 968 ---------------------AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVS 1026 (1416)
T ss_pred ---------------------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHH
Confidence 125668888999999999999888863310 000000 0000 000000 0
Q ss_pred H-HHHhhh-------hHHHHHcCChHHHHHHHHH-----HHhcc-ccCC-chhHHHHHHHHHHHHHhhchhHHHHHH---
Q 039706 839 L-LCRKSA-------GNEAFQAGRHSEAVEHYTA-----ALSCT-VESH-PFAAICFCNRAAAYKALRHITDAIADC--- 900 (1166)
Q Consensus 839 a-~~l~~l-------G~~~~~~G~yeEAie~y~k-----ALel~-~e~~-p~~a~a~~nlA~ay~~lGq~eeAi~~l--- 900 (1166)
+ ..+-.+ -..|.+.|.+.+|++..=+ ||++- .+.. ..++.++..-+..+....+|++|+..+
T Consensus 1027 aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1027 AARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 111111 1334444444444442211 11111 1111 234556665666777778888887754
Q ss_pred ---HHHHHhC----------------C---------ChHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 901 ---NLAIALD----------------G---------NYLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 901 ---ekALeld----------------P---------~~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
+.||.+. | .....+..+|.+++.+|.|..|.+-|.+|=
T Consensus 1107 r~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1107 REFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 4444431 1 123578889999999999999999888763
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.4e-06 Score=94.06 Aligned_cols=112 Identities=24% Similarity=0.147 Sum_probs=102.0
Q ss_pred hhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhC
Q 039706 831 PLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH---ITDAIADCNLAIALD 907 (1166)
Q Consensus 831 ~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq---~eeAi~~lekALeld 907 (1166)
.+..++.++.-|..+|.+|+..+++..|...|.+|+.+. |.++.++..+|.+++.... -.+|...++++|.+|
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 356677788889999999999999999999999999999 8999999999998876643 678999999999999
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|.++.+++.+|..++..|+|.+|+..++..+.+.|.+..
T Consensus 224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999887744
No 225
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.39 E-value=7e-05 Score=95.69 Aligned_cols=264 Identities=15% Similarity=0.034 Sum_probs=190.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ-SGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe-l~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
..+.+++-.+-.++|++.+.-+|+..-.|++.-.-++++++.++|.+.+++||. +++.... +++
T Consensus 1433 e~~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee---------------EKL 1497 (1710)
T KOG1070|consen 1433 EERDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE---------------EKL 1497 (1710)
T ss_pred hhcccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH---------------HHH
Confidence 334445555567899999999999999999999999999999999999999997 3333110 111
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcc
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQS 775 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~ 775 (1166)
. .|..+..+.. .-|.-+...+.|++|.+.+ +...+|..+..+|..-+++++|.++|+..++...+..
T Consensus 1498 N-iWiA~lNlEn--~yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~--------- 1564 (1710)
T KOG1070|consen 1498 N-IWIAYLNLEN--AYGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR--------- 1564 (1710)
T ss_pred H-HHHHHHhHHH--hhCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh---------
Confidence 1 1111111111 1355666778888887765 3456888899999999999999999999998755221
Q ss_pred cccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCCh
Q 039706 776 MELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855 (1166)
Q Consensus 776 l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~y 855 (1166)
.+ |..++..++...+-+.|...+.+|+..-|. .........-|..-|+.|+-
T Consensus 1565 --------------~v--W~~y~~fLl~~ne~~aa~~lL~rAL~~lPk------------~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1565 --------------KV--WIMYADFLLRQNEAEAARELLKRALKSLPK------------QEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred --------------hH--HHHHHHHHhcccHHHHHHHHHHHHHhhcch------------hhhHHHHHHHHHHHhhcCCc
Confidence 12 455788899999999999999998553332 23344444558888999999
Q ss_pred HHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--CChHHHHHHHHHHHHHh-hCHHHHHH
Q 039706 856 SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD--GNYLKAISRRATLYEMI-RDYDHAAS 932 (1166)
Q Consensus 856 eEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--P~~~~A~~~LA~ay~~l-GdyeeAi~ 932 (1166)
+.+..+|+-.|..+ |....+|.-+...-.+.++...+...|++++.+. |...+.++.+-.-|.+. |+-+.+..
T Consensus 1617 eRGRtlfEgll~ay----PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAY----PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred hhhHHHHHHHHhhC----ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999877 8888999888888888999999999999999875 55666666666666654 44333333
Q ss_pred HHHHHHHH
Q 039706 933 DFHRLIAL 940 (1166)
Q Consensus 933 ~yekALeL 940 (1166)
.=.+|++.
T Consensus 1693 VKarA~EY 1700 (1710)
T KOG1070|consen 1693 VKARAKEY 1700 (1710)
T ss_pred HHHHHHHH
Confidence 33344443
No 226
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.37 E-value=1e-05 Score=84.43 Aligned_cols=109 Identities=13% Similarity=0.082 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
..+|+++|.++..+|++++|+..|++++.+.|+. ..+|..+|.+|..+|++++|+.+|++++.+.|.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3456889999999999999999999999997763 4689999999999999999999999999999987655444444
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCC-------HHHHHHHHHHHHHhCCCh
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSND-------AEIALGVIDEALFISSYS 731 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd-------~eeALe~lekALel~P~~ 731 (1166)
++..+.+.. ...|+ +.+|+.+|++++..+|.+
T Consensus 115 i~~~~~~~~---------------~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 115 ICHYRGEQA---------------IEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHhhHHH---------------HHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 433332211 12344 456677777777777754
No 227
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=3.9e-06 Score=90.07 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=93.6
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccc----cCC----------chhHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV----ESH----------PFAAICFCNRAAAYKALRHITDAIADCNLAI 904 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~----e~~----------p~~a~a~~nlA~ay~~lGq~eeAi~~lekAL 904 (1166)
...+...|+.++++|+|.+|+..|..||..-. ... .....++.|.+.|++..|+|-++++.|..+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 44566779999999999999999999986431 111 2235578899999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 905 ALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 905 eldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
..+|.+.+||+.+|.++...=+..+|..+|.++|+++|....
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 999999999999999999999999999999999999887644
No 228
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.35 E-value=3.5e-07 Score=104.20 Aligned_cols=89 Identities=31% Similarity=0.536 Sum_probs=77.4
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
-|.|++||+..+++..+||++||++..|+||||.+. ...+.|.+-|+.+++|..||..|.|...|
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~---------------mvn~~rse~Ee~y~~ItkAY~~lTd~k~r 162 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP---------------MVNELRSEYEEKYKTITKAYGLLTDKKRR 162 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCC---------------CChhHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 389999999999999999999999999999999863 23566788999999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCC
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRT 1087 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~ 1087 (1166)
+.|=.++.++.++..+.|-..++.
T Consensus 163 enyl~yGtPd~pQhts~gIAlPk~ 186 (610)
T COG5407 163 ENYLNYGTPDSPQHTSEGIALPKV 186 (610)
T ss_pred HHHHhcCCCCCCccccceeecchh
Confidence 999999887777766666655554
No 229
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.30 E-value=7.1e-06 Score=80.47 Aligned_cols=95 Identities=28% Similarity=0.354 Sum_probs=86.8
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh----HHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY----LKAISRRA 918 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~----~~A~~~LA 918 (1166)
-..|..+...|+.+.|++.|.++|.+. |..+.+|+|+|.+|.-+|+.++|+.++++|+++.... ..++..+|
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~----P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLA----PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhc----ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 345888899999999999999999998 9999999999999999999999999999999997543 46799999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHh
Q 039706 919 TLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
.+|..+|+-+.|..+|+.|-++-
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhC
Confidence 99999999999999999998773
No 230
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.28 E-value=1.4e-06 Score=80.21 Aligned_cols=81 Identities=28% Similarity=0.372 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSY--SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVS 788 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~--~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~ 788 (1166)
+++|+.|+.+++++++..|. +..+++.+|.||+.+|+|++|+..+++ +...+.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~---------------------- 58 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP---------------------- 58 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH----------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH----------------------
Confidence 58999999999999999995 566788899999999999999999998 66655321
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 789 FRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 789 ~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
...+++|.+++.+|++++|+.+|+++
T Consensus 59 ---~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 ---DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp ---HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 12346799999999999999999874
No 231
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.26 E-value=1e-06 Score=91.15 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhcccchhhh
Q 039706 996 VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDLEEE 1071 (1166)
Q Consensus 996 as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~~YD~~~~ 1071 (1166)
.+..+|+++|++++.++|||+.... +...+..+...|..|++||++|+||.+|..|+..+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~---------------~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASG---------------SAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCC---------------ChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 5678999999999999999997521 122345688899999999999999999999998664
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=98.25 E-value=2.4e-05 Score=92.08 Aligned_cols=149 Identities=12% Similarity=0.040 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHHHH---HhCCChHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 711 SNDAEIALGVIDEAL---FISSYSEKLLEMKAEALFMLR---------KYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 711 ~gd~eeALe~lekAL---el~P~~~~al~~lA~~y~~lG---------dyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
....+.|+.+|.+|+ .++|....+|..+|.|++..- ...+|.+..+++++++|.+
T Consensus 271 ~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D------------- 337 (458)
T PRK11906 271 PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD------------- 337 (458)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-------------
Confidence 445678999999999 999999999999999987641 1223333444444443332
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
+.++..+|.++...++++.|
T Consensus 338 ------------------------------------------------------------a~a~~~~g~~~~~~~~~~~a 357 (458)
T PRK11906 338 ------------------------------------------------------------GKILAIMGLITGLSGQAKVS 357 (458)
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHhhcchhhH
Confidence 33344456666667778888
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH-HHHhhCHHHHHHHHHH
Q 039706 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL-YEMIRDYDHAASDFHR 936 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a-y~~lGdyeeAi~~yek 936 (1166)
+..|++|+.++ |..+.+|+.+|.++...|+.++|++.+++|++++|....+-...-.+ .+.-...++|+..|-+
T Consensus 358 ~~~f~rA~~L~----Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 358 HILFEQAKIHS----TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHhhcC----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 88888888887 88888888888888888888888888888888888876665554444 3444556677766644
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.24 E-value=2.9e-06 Score=76.74 Aligned_cols=69 Identities=17% Similarity=0.347 Sum_probs=49.5
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC-------CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALD-------GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld-------P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
|..+.++.++|.+|..+|+|++|+.+|++++++. |..+.++.++|.+|..+|++++|+..|++++++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 5566777777777777777888877777777652 22356677788888888888888888888877653
No 234
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.24 E-value=1e-05 Score=99.00 Aligned_cols=138 Identities=13% Similarity=0.052 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc--------CChHHHHH
Q 039706 792 WRCCLIFKSYFTLGR---LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA--------GRHSEAVE 860 (1166)
Q Consensus 792 wr~~lLA~ay~~lGd---~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~--------G~yeEAie 860 (1166)
|.+++.|..|+..++ +..|+.+|++++..+|+. +.++-.++.++... .++..|..
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~--------------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF--------------TYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc--------------HHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 335566766766554 889999999997766663 22222223322221 23456666
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 861 HYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 861 ~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
...+++.+. ..+..+.+|.-+|..+...|++++|+..+++|+.++|+ ..+|..+|.+|...|++++|+..|++|+.+
T Consensus 406 ~~~~a~al~--~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 406 ELDNIVALP--ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHhhhcc--cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 667766642 12556788888999999999999999999999999995 789999999999999999999999999999
Q ss_pred hhhhHH
Q 039706 941 LTKQIE 946 (1166)
Q Consensus 941 ~P~~~e 946 (1166)
+|....
T Consensus 483 ~P~~pt 488 (517)
T PRK10153 483 RPGENT 488 (517)
T ss_pred CCCCch
Confidence 988653
No 235
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=0.0001 Score=89.52 Aligned_cols=285 Identities=16% Similarity=0.072 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH--------HHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchh
Q 039706 609 WRLSNRAATRMALGRMRDALSDCM--------LAVA---IDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCV 677 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fe--------kALe---ldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~ 677 (1166)
..|-|+|....+..+.+-|.-++- +||+ .+|+.. -...|.+...+|-+++|+..|+++-..+
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~--eakvAvLAieLgMlEeA~~lYr~ckR~D----- 830 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED--EAKVAVLAIELGMLEEALILYRQCKRYD----- 830 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch--hhHHHHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence 457788877777777766655442 2222 244433 3345677788888888888888865421
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHH
Q 039706 678 DQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQ 757 (1166)
Q Consensus 678 a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lek 757 (1166)
.+..+++ ..|.|++|++..+.-=.+. -...|+++|.-+...++.+.|+++|++
T Consensus 831 -----------------------LlNKlyQ--s~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 831 -----------------------LLNKLYQ--SQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred -----------------------HHHHHHH--hcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 1111221 3677777776554422221 235678888888888999999999887
Q ss_pred HHHhccCCCCCccccCcccccCccchhhhhh----hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC-------CCchh
Q 039706 758 TFHFAEKNSPPLDANGQSMELDSSESTKHVS----FRLWRCCLIFKSYFTLGRLEEAIAALERHESGN-------GGKML 826 (1166)
Q Consensus 758 ALel~p~n~~a~~~~g~~l~ld~~~~~~~~~----~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~-------~~k~l 826 (1166)
+-...-+. -+.+..++..+..... ..+|+| .|..+...|+.+.|+.+|..|..-- -.-..
T Consensus 884 ~~~hafev-------~rmL~e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 884 AGVHAFEV-------FRMLKEYPKQIEQYVRRKRDESLYSW--WGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKT 954 (1416)
T ss_pred cCChHHHH-------HHHHHhChHHHHHHHHhccchHHHHH--HHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCc
Confidence 52111000 0011112222211110 023444 6777888999999999999975410 00112
Q ss_pred hhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhc------cccCCchhHHHH-----------HHHHHHHHH
Q 039706 827 ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSC------TVESHPFAAICF-----------CNRAAAYKA 889 (1166)
Q Consensus 827 e~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel------~~e~~p~~a~a~-----------~nlA~ay~~ 889 (1166)
.++..+.....+..+.+.+|..|...|++.+|+..|++|-.. ..++.-.+ .+| ...|.-|..
T Consensus 955 ~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d-~L~nlal~s~~~d~v~aArYyEe 1033 (1416)
T KOG3617|consen 955 DKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKD-RLANLALMSGGSDLVSAARYYEE 1033 (1416)
T ss_pred hHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHhhcCchhHHHHHHHHHH
Confidence 334445555555666677899999999999999999887443 21211111 111 111222333
Q ss_pred hh-chhHHHHHHHHH------H-----------------HhCC-ChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 890 LR-HITDAIADCNLA------I-----------------ALDG-NYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 890 lG-q~eeAi~~lekA------L-----------------eldP-~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
+| +...|+..|.+| | .++| .+++.+.+-+..+....+|++|+..+-.+
T Consensus 1034 ~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1034 LGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred cchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 43 444455444332 2 1234 35667777788888999999998765433
No 236
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.21 E-value=0.00064 Score=77.61 Aligned_cols=260 Identities=16% Similarity=0.042 Sum_probs=170.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFL-RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~-~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
+..-|++-+..|+|+.|..-|+-.+. +|.-- -.+..|-....++|..+.|+.|-+++....|.-..+....
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~At------- 194 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARAT------- 194 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHH-------
Confidence 33445555566666666666655543 33221 1111112222345666666666666666555532221111
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC---CChH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS---SYSE-----KLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~---P~~~-----~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
+-.....|+|+.||.+++...... +... .++..++..+.. -+...|.....+++++
T Consensus 195 ---------------Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL 258 (531)
T COG3898 195 ---------------LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKL 258 (531)
T ss_pred ---------------HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhc
Confidence 011234799999999998876532 3221 222333333332 3578899999999999
Q ss_pred ccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHH
Q 039706 762 AEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLC 841 (1166)
Q Consensus 762 ~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~ 841 (1166)
.|+..++ ....+.+|+..|+..++-.+++.+-+..+++.
T Consensus 259 ~pdlvPa-------------------------av~AAralf~d~~~rKg~~ilE~aWK~ePHP~---------------- 297 (531)
T COG3898 259 APDLVPA-------------------------AVVAARALFRDGNLRKGSKILETAWKAEPHPD---------------- 297 (531)
T ss_pred CCccchH-------------------------HHHHHHHHHhccchhhhhhHHHHHHhcCCChH----------------
Confidence 9987654 24467899999999999999999766555532
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
++..|....--+.++.-++++-.+. ...|++......++.+-+..|++..|....+.++.+.|. ..++..++.+-
T Consensus 298 ---ia~lY~~ar~gdta~dRlkRa~~L~-slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIe 372 (531)
T COG3898 298 ---IALLYVRARSGDTALDRLKRAKKLE-SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIE 372 (531)
T ss_pred ---HHHHHHHhcCCCcHHHHHHHHHHHH-hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHH
Confidence 2444555555566777777665543 345888999999999999999999999999999999996 45677788888
Q ss_pred HHh-hCHHHHHHHHHHHHHH
Q 039706 922 EMI-RDYDHAASDFHRLIAL 940 (1166)
Q Consensus 922 ~~l-GdyeeAi~~yekALeL 940 (1166)
... ||-.++..++-++++-
T Consensus 373 eAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 373 EAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhccCchHHHHHHHHHHhcC
Confidence 765 9999999999999864
No 237
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.00033 Score=76.81 Aligned_cols=247 Identities=12% Similarity=0.059 Sum_probs=163.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
.-|+-.|+|..+|....+.-.. +......+.+++.|+.+|.+..-+......- ..|- .
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~l--q------------------ 73 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEGK-ATPL--Q------------------ 73 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHccccccccccccccc-CChH--H------------------
Confidence 4577789999998887775443 3677788889999999999876555433221 1110 0
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccC
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFI--SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANG 773 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel--~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g 773 (1166)
++.....++. ..++.+.-+.-+.+.+.. ...+..++..-|.+|++-+++++|+..+.....+.-
T Consensus 74 --Avr~~a~~~~--~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~---------- 139 (299)
T KOG3081|consen 74 --AVRLLAEYLE--LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEA---------- 139 (299)
T ss_pred --HHHHHHHHhh--CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHH----------
Confidence 0011111111 122223333333333222 223345667778899999999999988776332210
Q ss_pred cccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC
Q 039706 774 QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG 853 (1166)
Q Consensus 774 ~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G 853 (1166)
..+-..++.++.+++-|...+++....+.+..+. ..+.+|..+ ....+
T Consensus 140 --------------------~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt---------QLA~awv~l---a~gge 187 (299)
T KOG3081|consen 140 --------------------AALNVQILLKMHRFDLAEKELKKMQQIDEDATLT---------QLAQAWVKL---ATGGE 187 (299)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH---------HHHHHHHHH---hccch
Confidence 1234467788888999999998875544432110 112222221 12335
Q ss_pred ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
.+.+|.-+|++.-+.. +..+.++...|.|++.+++|++|...++.||..++.+++++.++-.+-..+|.-.++...
T Consensus 188 k~qdAfyifeE~s~k~----~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKT----PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred hhhhHHHHHHHHhccc----CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 6889999999987644 677888999999999999999999999999999999999999999999999988777665
Q ss_pred H
Q 039706 934 F 934 (1166)
Q Consensus 934 y 934 (1166)
+
T Consensus 264 ~ 264 (299)
T KOG3081|consen 264 N 264 (299)
T ss_pred H
Confidence 4
No 238
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.18 E-value=4.6e-06 Score=73.17 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=55.7
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchh
Q 039706 618 RMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCV 677 (1166)
Q Consensus 618 yl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~ 677 (1166)
++..|+|++|+..|++++..+|++..+++.+|.||+.+|++++|...+++++..+|+++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 467899999999999999999999999999999999999999999999999999998644
No 239
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=5.4e-05 Score=80.29 Aligned_cols=200 Identities=15% Similarity=0.075 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 039706 642 LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVI 721 (1166)
Q Consensus 642 ~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~l 721 (1166)
+..++.+|.+|-.+|-..-|.-.|.+++.+.|+.+. .++.++.++. ..|+|+.|.+.|
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~--------------------vfNyLG~Yl~--~a~~fdaa~eaF 122 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE--------------------VFNYLGIYLT--QAGNFDAAYEAF 122 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH--------------------HHHHHHHHHH--hcccchHHHHHh
Confidence 456788899999999999999999999999998432 3344444443 379999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHH
Q 039706 722 DEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSY 801 (1166)
Q Consensus 722 ekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay 801 (1166)
+..++++|....++.++|..++.-|+|.-|.+.+.+-.+.+|+++- -.+|.|. -
T Consensus 123 ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf---------------------R~LWLYl-----~ 176 (297)
T COG4785 123 DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF---------------------RSLWLYL-----N 176 (297)
T ss_pred hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH---------------------HHHHHHH-----H
Confidence 9999999999999999999999999999999999998888886542 2344332 1
Q ss_pred HHcCCHHHHHHHHHH-HhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC---CchhH
Q 039706 802 FTLGRLEEAIAALER-HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES---HPFAA 877 (1166)
Q Consensus 802 ~~lGd~eeAl~~lek-Al~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~---~p~~a 877 (1166)
...-+..+|...+.+ +...+. .-+-+.. +-+-.|+..+ ...++++.+-..++ .....
T Consensus 177 E~k~dP~~A~tnL~qR~~~~d~---------------e~WG~~i---V~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LT 237 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAEKSDK---------------EQWGWNI---VEFYLGKISE-ETLMERLKADATDNTSLAEHLT 237 (297)
T ss_pred HhhCCHHHHHHHHHHHHHhccH---------------hhhhHHH---HHHHHhhccH-HHHHHHHHhhccchHHHHHHHH
Confidence 233456667665544 311111 1111110 1111222221 11222222221110 02235
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCC
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP 908 (1166)
.+|+.+|..|..+|+.++|...|+.|+..+-
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 6788899999999999999999999988653
No 240
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.17 E-value=2.5e-06 Score=89.49 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=61.9
Q ss_pred cchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.+||.++|++.. .+...+++.|+++..++|||+.... ++..+..+...-..||+||.+|+||-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~---------------~~~eq~~a~~~ss~iN~AY~tLkdPl 66 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANS---------------SAQEQRLAMQKSAEVNDALQILKDPI 66 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCC---------------CHHHHHHHHHHHHHHHHHHHHHCChH
Confidence 389999999976 8899999999999999999998531 34556678888999999999999999
Q ss_pred hhcccchhh
Q 039706 1062 KRSRYDLEE 1070 (1166)
Q Consensus 1062 kR~~YD~~~ 1070 (1166)
+|..|=..+
T Consensus 67 ~RA~YLL~L 75 (173)
T PRK01773 67 LRAEAIIAL 75 (173)
T ss_pred HHHHHHHHh
Confidence 999996644
No 241
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.15 E-value=1.3e-06 Score=101.87 Aligned_cols=105 Identities=30% Similarity=0.374 Sum_probs=98.7
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
..+...++.++..+.|+.|+..|.+||+++ |..+..+.+++.++.+.+.+..|+.++.+||+++|.+.++|+++|.
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ld----pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~ 80 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELD----PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGT 80 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcC----CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccH
Confidence 345567889999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 920 LYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 920 ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+.+.++.+.+|+.+|+....+.|+.....
T Consensus 81 a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 81 AVMALGEFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHhHHHHHHHHHHHHHhhhcCcCcHHHH
Confidence 99999999999999999999999987654
No 242
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.14 E-value=9.1e-06 Score=72.34 Aligned_cols=70 Identities=24% Similarity=0.187 Sum_probs=47.7
Q ss_pred hHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 846 GNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
..+|+..++|++|++++++++.++ |.++..|..+|.+|..+|++.+|+.+|+++++..|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD----PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC----cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 345666777777777777777766 6666777777777777777777777777777777766666555443
No 243
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.00053 Score=74.76 Aligned_cols=165 Identities=15% Similarity=0.199 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHH
Q 039706 715 EIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRC 794 (1166)
Q Consensus 715 eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~ 794 (1166)
+..+..+++-+. .+.+.++.++.-++.|.-.+..+.++++.+|...++ ..
T Consensus 166 ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~------------------------L~ 215 (366)
T KOG2796|consen 166 ESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQ------------------------LL 215 (366)
T ss_pred hhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHH------------------------HH
Confidence 555666666443 467788999999999999999999999977543221 12
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
..+|.+.++.|+.+.|..++++... ....+.........+++.+.++.-.++|.+|...|++.+..+ +
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek--------~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D----~ 283 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEK--------VTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD----P 283 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH--------HHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC----C
Confidence 4588999999999999999997532 122244444456677788888999999999999999999888 8
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH---HHHHHHHHHH
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL---KAISRRATLY 921 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~---~A~~~LA~ay 921 (1166)
.++.+-++.|.|++-+|+..+|++..+.++...|... ...+++-.+|
T Consensus 284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 8889999999999999999999999999999998743 2344454444
No 244
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.12 E-value=0.0011 Score=82.41 Aligned_cols=231 Identities=14% Similarity=0.058 Sum_probs=153.5
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHH
Q 039706 619 MALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSEC 698 (1166)
Q Consensus 619 l~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~ 698 (1166)
+..+++.+|+..+.+.++..|+..-+....|..+.++|++++|..+++..-.+.+++....
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tL------------------- 80 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTL------------------- 80 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHH-------------------
Confidence 4567899999999999999999999999999999999999999977776555555422111
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 699 MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 699 ~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
..+... ++..+++++|..+|++++..+|. .+.++.+-.+|.+.+.|.+-.+.--+..+..|+++..
T Consensus 81 -q~l~~~--y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy---------- 146 (932)
T KOG2053|consen 81 -QFLQNV--YRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY---------- 146 (932)
T ss_pred -HHHHHH--HHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch----------
Confidence 111111 23478899999999999999999 8899999999999999987666655555666655321
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHHcCCHHHHH---------HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAI---------AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl---------~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
. |..+..++...-..+.+. ...++.+...+ + + ....++..+ -.++
T Consensus 147 ------------f--WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k-~-------~s~aE~~Ly---l~iL 200 (932)
T KOG2053|consen 147 ------------F--WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-K-I-------ESEAEIILY---LLIL 200 (932)
T ss_pred ------------H--HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-c-c-------chHHHHHHH---HHHH
Confidence 1 223333333333333222 22222222111 0 0 011111122 3466
Q ss_pred HHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 850 FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
..+++|++|.+.+..-+.-- ..+.+...-......+..+++|.+-.+.+.+++..++++
T Consensus 201 ~~~~k~~eal~~l~~~la~~--l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEK--LTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HhcccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 78899999999995443211 113333333445567788999999999999999999987
No 245
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.11 E-value=1.1e-05 Score=71.76 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=59.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchh
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCV 677 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~ 677 (1166)
..+|+..++|++|+..+++++.++|+++.+|+.+|.+|..+|++.+|+..|+++++..|++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 568999999999999999999999999999999999999999999999999999999998644
No 246
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=3.6e-05 Score=90.83 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=102.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchh
Q 039706 797 IFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA 876 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~ 876 (1166)
+...+...++++.|+..+++....++. + ...++.++...++..+|+..+.++|... |.+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---------------v--~~~LA~v~l~~~~E~~AI~ll~~aL~~~----p~d 233 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---------------V--AVLLARVYLLMNEEVEAIRLLNEALKEN----PQD 233 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---------------H--HHHHHHHHHhcCcHHHHHHHHHHHHHhC----CCC
Confidence 344556678999999999996444432 1 2235788888899999999999999877 788
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
+.++...|..++..++++.|+..+++|+.+.|.....|+.||.+|..+|+|++|+..+..
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999987663
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.10 E-value=1.3e-05 Score=94.13 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=62.4
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRV---QVRAANCHLALGEIEDASKYFRMCLQSG 672 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A---~~~LA~lyl~lGd~eeAl~~fekALel~ 672 (1166)
+..+++|+|+|.+|+.+|+|++|+..|++||+++|++..+ |+++|.+|..+|++++|+.+|++|+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4445667789999999999999999999999999999865 9999999999999999999999999973
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.09 E-value=2.2e-05 Score=86.76 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=94.8
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISRRA 918 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~LA 918 (1166)
+++.+..+++.|+|.+|...|..-|+..|.. +..+.++|+||.+++.+|+|++|...|..+++-.|.. +++++.+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 6677889999999999999999999987543 6778899999999999999999999999999988765 57899999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.++..+|+.++|...|+++++.+|....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999998744
No 249
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.09 E-value=3.5e-05 Score=76.34 Aligned_cols=98 Identities=16% Similarity=0.022 Sum_probs=86.5
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC---hHHHHHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN---YLKAISRR 917 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~---~~~A~~~L 917 (1166)
.++++|.++-..|+.++|+.+|++++.... ..+....++..+|.+|..+|++++|+..+++++...|+ +..+...+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 456679999999999999999999998642 23455779999999999999999999999999999888 77888889
Q ss_pred HHHHHHhhCHHHHHHHHHHHHH
Q 039706 918 ATLYEMIRDYDHAASDFHRLIA 939 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALe 939 (1166)
+.++..+|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999987774
No 250
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.08 E-value=7.4e-06 Score=71.84 Aligned_cols=66 Identities=18% Similarity=0.063 Sum_probs=44.9
Q ss_pred HHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 850 FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
+..|+|++|+..|++++..+ |.+..+++.+|.||.+.|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 45667777777777777666 6666777777777777777777777777777777776666655554
No 251
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.07 E-value=9.4e-06 Score=95.33 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=50.2
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH---HHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI---CFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~---a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
..+..+..+.++|.+|+..|+|++|+.+|++||+++ |.+.. +|+|+|.||..+|++++|++++++||++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445567777777777777777777777777777776 55553 4777777777777777777777777776
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.06 E-value=4.6e-05 Score=77.03 Aligned_cols=106 Identities=22% Similarity=0.126 Sum_probs=92.8
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH---HHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL---KAIS 915 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~---~A~~ 915 (1166)
...++..|...++.|+|.+|++.|+......|-. +....+.+.++.+|+..++|++|+..+++-|+++|.++ -+++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3456667999999999999999999998776432 56678889999999999999999999999999999875 5799
Q ss_pred HHHHHHHHhhC---------------HHHHHHHHHHHHHHhhhhH
Q 039706 916 RRATLYEMIRD---------------YDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 916 ~LA~ay~~lGd---------------yeeAi~~yekALeL~P~~~ 945 (1166)
.+|.+++.+.. ..+|...|++.+..+|+..
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 99999999887 8899999999999999864
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.05 E-value=0.00086 Score=73.81 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc
Q 039706 606 CEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV 675 (1166)
Q Consensus 606 ~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n 675 (1166)
.++.-||+.|...+..|+|.+|+..|+.+....|.. .++.+.++.++++.+++++|+..+++-+.+.|.+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence 355668889999999999999999999988887755 5788889999999999999999999998888874
No 254
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.05 E-value=7.3e-05 Score=74.05 Aligned_cols=66 Identities=23% Similarity=0.175 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
.++|++|.++-.+|+.++|+..|++++...... ..+++.+|..|..+|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 356788888888888888888888888865433 568888888888888888888888887776665
No 255
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.00 E-value=1.6e-05 Score=71.85 Aligned_cols=71 Identities=21% Similarity=0.220 Sum_probs=60.2
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc---cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV---ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~---e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
..+..+.++|.+|...|+|++|+.+|++++++.. ...+..+.++.++|.+|..+|++++|+.++++|+++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3466788899999999999999999999998732 2334568899999999999999999999999999863
No 256
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=7.9e-05 Score=86.55 Aligned_cols=161 Identities=14% Similarity=0.033 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 039706 733 KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIA 812 (1166)
Q Consensus 733 ~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~ 812 (1166)
.+...+...|+.+.+...+......++.+..+.+++ +.+.+..++..|++.+|.+
T Consensus 207 ~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~-------------------------l~LKsq~eY~~gn~~kA~K 261 (696)
T KOG2471|consen 207 ELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMA-------------------------LLLKSQLEYAHGNHPKAMK 261 (696)
T ss_pred hhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHH-------------------------HHHHHHHHHHhcchHHHHH
Confidence 455666677777777777777776666655433221 3557888999999999999
Q ss_pred HHHHH-hcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh-cc----c---------cCCchhH
Q 039706 813 ALERH-ESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS-CT----V---------ESHPFAA 877 (1166)
Q Consensus 813 ~lekA-l~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe-l~----~---------e~~p~~a 877 (1166)
.+... +...+ ...+-+.......+.++|-++++.+.|.-++.+|.+||. .. . -......
T Consensus 262 lL~~sni~~~~------g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~ 335 (696)
T KOG2471|consen 262 LLLVSNIHKEA------GGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSM 335 (696)
T ss_pred HHHhccccccc------CccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccch
Confidence 98763 11111 111223333456678999999999999999999999995 11 0 1123457
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
.++||.|..|+..|+.-.|.++|.+++...-.++..|+++|.|.+..
T Consensus 336 eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 336 EILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999998754
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=7.1e-05 Score=82.77 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
+|+.|..++..|+|..|...|..-|+..|+. +.|++.||.+++.+|+|+.|...|..+++-.|+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-------------
Confidence 6888999999999999999999999999976 689999999999999999999999999887776
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~ 766 (1166)
.|..++.++.+|.++..+|+.++|...|+++++..|...
T Consensus 211 ----------------------------------------s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 211 ----------------------------------------SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred ----------------------------------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 355667777888888888888888888888888877654
No 258
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.98 E-value=0.00037 Score=89.39 Aligned_cols=196 Identities=14% Similarity=0.017 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cCCCCCccccCcccccCccchhhhhhhhhH
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA-EKNSPPLDANGQSMELDSSESTKHVSFRLW 792 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~-p~n~~a~~~~g~~l~ld~~~~~~~~~~~~w 792 (1166)
..+..+-+++.+..+|++.-.|..+...++.+++.++|.+..++||..- +... ..-..+|
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe-------------------eEKLNiW 1500 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREE-------------------EEKLNIW 1500 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh-------------------HHHHHHH
Confidence 3345667888999999999999999999999999999999999999642 1110 1112233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
. .+-.....-|.-+.-.+.|++|.+... -...+..+..+|...+++++|.++|+..++.-
T Consensus 1501 i--A~lNlEn~yG~eesl~kVFeRAcqycd---------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--- 1560 (1710)
T KOG1070|consen 1501 I--AYLNLENAYGTEESLKKVFERACQYCD---------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF--- 1560 (1710)
T ss_pred H--HHHhHHHhhCcHHHHHHHHHHHHHhcc---------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh---
Confidence 2 222333444566666778887633221 12345567889999999999999999999865
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhc
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN--YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSN 949 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~--~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~ 949 (1166)
.....+|...|..++...+-+.|...+.+||..-|. +.+....-|.+-++.||-+.+...|+-.+.-+|+..+.|.
T Consensus 1561 -~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~ 1638 (1710)
T KOG1070|consen 1561 -GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWS 1638 (1710)
T ss_pred -cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHH
Confidence 466789999999999999999999999999999998 8888888999999999999999999999999999999884
No 259
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=7.2e-05 Score=88.30 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=69.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchh
Q 039706 797 IFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA 876 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~ 876 (1166)
++++|...++-.+|+..+.+++...+ .....+...+..+...++|+.|+.+.++|+.+. |..
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p--------------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls----P~~ 267 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENP--------------QDSELLNLQAEFLLSKKKYELALEIAKKAVELS----PSE 267 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----chh
Confidence 55666666666666666666532222 224445556888899999999999999999988 999
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHH
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLA 903 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekA 903 (1166)
..+|+.||.+|..+|+++.|+..++.+
T Consensus 268 f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 268 FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999887744
No 260
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00025 Score=82.55 Aligned_cols=313 Identities=16% Similarity=0.094 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH-HHhCCC------C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLA-VAIDPD------F--LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ 679 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekA-LeldP~------~--~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~ 679 (1166)
.+++..+..++..|+|.+|...+... +...|. . -..|.++|.++++++.|..+..+|.+||+. .+...
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N---~c~qL 317 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRN---SCSQL 317 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHH---HHHHH
Confidence 45666899999999999999887653 222333 2 235789999999999999999999999961 00000
Q ss_pred HH-HHH-HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC----------
Q 039706 680 KI-AVE-ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRK---------- 747 (1166)
Q Consensus 680 ~~-l~E-a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGd---------- 747 (1166)
.. +.. -...+...... +..+..+. .+...|+.-.|.++|.+++...-.+|.+|..+|+|.+...+
T Consensus 318 ~~g~~~~~~~tls~nks~-eilYNcG~--~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s 394 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSM-EILYNCGL--LYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSS 394 (696)
T ss_pred hccCCCCcceehhcccch-hhHHhhhH--HHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCC
Confidence 00 000 00000011111 12222222 22348999999999999999999999999999999876421
Q ss_pred ---------------------------------------HHHHHHHHHHHHHhccCCCCCc-------------------
Q 039706 748 ---------------------------------------YEEVIQLCEQTFHFAEKNSPPL------------------- 769 (1166)
Q Consensus 748 ---------------------------------------yeeAi~~lekALel~p~n~~a~------------------- 769 (1166)
.+=|.-+++.+|-+-|.....-
T Consensus 395 ~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~ 474 (696)
T KOG2471|consen 395 LSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHE 474 (696)
T ss_pred cccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCC
Confidence 1123334444444432211000
Q ss_pred ---------cccCcccc----cCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch
Q 039706 770 ---------DANGQSME----LDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV 836 (1166)
Q Consensus 770 ---------~~~g~~l~----ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~ 836 (1166)
...+.-.. ..+.........+...+...+.+-..+|+.-.|+....+.++... + ...
T Consensus 475 e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~---------l-S~~ 544 (696)
T KOG2471|consen 475 EGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD---------L-SKI 544 (696)
T ss_pred CCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh---------h-hhH
Confidence 00000000 000000011112223334455666788999999998888543211 1 111
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc-----------------------c--cCC---------chhHHHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT-----------------------V--ESH---------PFAAICFCN 882 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~-----------------------~--e~~---------p~~a~a~~n 882 (1166)
....-++..|.++.-..+..+|+.++.--+--+ + ... .-...++++
T Consensus 545 ~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~n 624 (696)
T KOG2471|consen 545 YKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFAN 624 (696)
T ss_pred HHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHH
Confidence 223334445777788888888888776522110 0 000 012356788
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 883 RAAAYKALRHITDAIADCNLAIALDG--NYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 883 lA~ay~~lGq~eeAi~~lekALeldP--~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
+|.+|.-++++++|...+..|..+-+ ..++|....-.+-+++|+...|+..+++.
T Consensus 625 La~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 625 LAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 99999999999999999988888876 55677776667777888888888877764
No 261
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.94 E-value=0.0065 Score=69.69 Aligned_cols=267 Identities=14% Similarity=0.033 Sum_probs=183.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDPDF--LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP~~--~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
.|.+-...|+-..|...-.++-.+-..+ +-+++.-+..-+..|+++.|.+.|+..+. +|+.
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt---------------- 152 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET---------------- 152 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH----------------
Confidence 4555666778888888877776544444 34556667778888999999999998764 4441
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
..+-.-+.++.....|+.+.|+.+-+.+-...|.-+.++...-...+..|+|+.|+++++......--..
T Consensus 153 -----RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~----- 222 (531)
T COG3898 153 -----RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK----- 222 (531)
T ss_pred -----HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch-----
Confidence 0112223344455689999999999999999999999988888999999999999999987664321110
Q ss_pred cCcccccCccchhhhhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFT-LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~-lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
... -+....++-+.+... .-+...|.....++.+..++ .+-...-.+..++
T Consensus 223 ---------~~a-----eR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pd--------------lvPaav~AAralf 274 (531)
T COG3898 223 ---------DVA-----ERSRAVLLTAKAMSLLDADPASARDDALEANKLAPD--------------LVPAAVVAARALF 274 (531)
T ss_pred ---------hhH-----HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc--------------cchHHHHHHHHHH
Confidence 000 000001122222222 23456666666655333332 2223334578899
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH---HhCCChHHHHHHHHHHHHHhhCH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAI---ALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekAL---eldP~~~~A~~~LA~ay~~lGdy 927 (1166)
+.|+..++-..++.+.+.. .+|. ++.+|....--+.++.-++++- .+.|++.+..+.++..-+.-|+|
T Consensus 275 ~d~~~rKg~~ilE~aWK~e--PHP~-------ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 275 RDGNLRKGSKILETAWKAE--PHPD-------IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred hccchhhhhhHHHHHHhcC--CChH-------HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 9999999999999999876 2233 3445555555566666666654 45799999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 039706 928 DHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~ 944 (1166)
..|...-+.+..+.|..
T Consensus 346 ~~ARa~Aeaa~r~~pre 362 (531)
T COG3898 346 SAARAKAEAAAREAPRE 362 (531)
T ss_pred HHHHHHHHHHhhhCchh
Confidence 99999999888887764
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.91 E-value=0.00019 Score=72.60 Aligned_cols=70 Identities=14% Similarity=0.066 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~ 676 (1166)
++..+|+.|...+..|+|.+|+..|+.+....|.. ..+.+.||.+|+..+++++|+..+++.++++|.++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 45668899999999999999999999999988754 68999999999999999999999999999999864
No 263
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.87 E-value=0.00055 Score=71.37 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=120.3
Q ss_pred HhhCcchhHHHHHHHHHhchHHH-HHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 039706 588 IKQEPNLASAETIAAQEACEKWR-LSNRAATRMALGRMRDALSDCMLAVA-IDPDFLRVQVRAANCHLALGEIEDASKYF 665 (1166)
Q Consensus 588 ik~ep~~A~a~~~aAIe~~e~~a-y~nrA~ayl~lG~y~eAI~~fekALe-ldP~~~~A~~~LA~lyl~lGd~eeAl~~f 665 (1166)
-+++|+...-+...+++..|+.. .+.+|.++..+|++.+|...|++++. +.-.+...++.+|++++..+++..|...+
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35678877777777777777644 68899999999999999999999986 55677889999999999999999999999
Q ss_pred HHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc
Q 039706 666 RMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML 745 (1166)
Q Consensus 666 ekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l 745 (1166)
++..+..|..-.... ...+.+.+ ...|.+.+|...|+.++...|. +......+..+..+
T Consensus 148 e~l~e~~pa~r~pd~------------------~Ll~aR~l--aa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~q 206 (251)
T COG4700 148 EDLMEYNPAFRSPDG------------------HLLFARTL--AAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQ 206 (251)
T ss_pred HHHhhcCCccCCCCc------------------hHHHHHHH--HhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHh
Confidence 999998776211111 11112222 2479999999999999999886 56778889999999
Q ss_pred cCHHHHHHHHHHHHHh
Q 039706 746 RKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 746 GdyeeAi~~lekALel 761 (1166)
|+..+|..-+..+.+.
T Consensus 207 gr~~ea~aq~~~v~d~ 222 (251)
T COG4700 207 GRLREANAQYVAVVDT 222 (251)
T ss_pred cchhHHHHHHHHHHHH
Confidence 9999988777666543
No 264
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0016 Score=71.55 Aligned_cols=204 Identities=16% Similarity=0.089 Sum_probs=136.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHH--------------HHHHHHHHHHhccCCCCCccccCcc
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEE--------------VIQLCEQTFHFAEKNSPPLDANGQS 775 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyee--------------Ai~~lekALel~p~n~~a~~~~g~~ 775 (1166)
-.|.|.++|...++.-... ........+++.|+.+|+|.. |+..+...++. |.+... ....+
T Consensus 20 Y~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~-e~~~~~--~~~~l 95 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLEL-ESNKKS--ILASL 95 (299)
T ss_pred HhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhC-cchhHH--HHHHH
Confidence 3688888888776654333 667788888999999998764 33333333322 111000 00000
Q ss_pred cc--cCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC
Q 039706 776 ME--LDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG 853 (1166)
Q Consensus 776 l~--ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G 853 (1166)
.+ .+.... ...+| ...-|.+|...+++++|++.+... ..++.....-.++.+..
T Consensus 96 ~E~~a~~~~~----sn~i~-~l~aa~i~~~~~~~deAl~~~~~~-------------------~~lE~~Al~VqI~lk~~ 151 (299)
T KOG3081|consen 96 YELVADSTDG----SNLID-LLLAAIIYMHDGDFDEALKALHLG-------------------ENLEAAALNVQILLKMH 151 (299)
T ss_pred HHHHHhhccc----hhHHH-HHHhhHHhhcCCChHHHHHHHhcc-------------------chHHHHHHHHHHHHHHH
Confidence 00 000000 00122 234577899999999999998763 11222222356788899
Q ss_pred ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh----hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHH
Q 039706 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL----RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l----Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyee 929 (1166)
+++-|...++++.+++ +-.++..+|.+|..+ +++.+|.-.|+..-+..|-.+..+...|.|++.+++|++
T Consensus 152 r~d~A~~~lk~mq~id------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 152 RFDLAEKELKKMQQID------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHccc------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHH
Confidence 9999999999999876 223445566666544 458999999999888777778999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHh
Q 039706 930 AASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 930 Ai~~yekALeL~P~~~e~ 947 (1166)
|...++.+|..+++..+.
T Consensus 226 Ae~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 226 AESLLEEALDKDAKDPET 243 (299)
T ss_pred HHHHHHHHHhccCCCHHH
Confidence 999999999988877653
No 265
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.84 E-value=9.7e-06 Score=91.09 Aligned_cols=96 Identities=27% Similarity=0.423 Sum_probs=89.9
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
+..+..++..|.+++||++|+.||.++ |..+.+|..++.+++++++...|+.+|..|+.++|+....|-.++.+..
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~ln----p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELN----PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccC----CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 344667788999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHhh
Q 039706 923 MIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 923 ~lGdyeeAi~~yekALeL~P 942 (1166)
.+|+|++|..+|+.+.+++=
T Consensus 194 llg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred HhhchHHHHHHHHHHHhccc
Confidence 99999999999999998743
No 266
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.78 E-value=0.00017 Score=75.25 Aligned_cols=87 Identities=21% Similarity=0.219 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc----------hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH----------ITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq----------~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
|+.|.+.++.....+ |.++..+++=|.+++.+.+ +++|+.-|+.||.++|+..++++.+|.+|..+
T Consensus 7 FE~ark~aea~y~~n----P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN----PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 678999999998888 8899999988888887644 67789999999999999999999999999877
Q ss_pred hC-----------HHHHHHHHHHHHHHhhhhH
Q 039706 925 RD-----------YDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 925 Gd-----------yeeAi~~yekALeL~P~~~ 945 (1166)
+. |++|..+|++|+.+.|.+.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 54 6667777777777777654
No 267
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=2.3e-05 Score=84.45 Aligned_cols=68 Identities=32% Similarity=0.611 Sum_probs=57.9
Q ss_pred cchhhhcccC---CCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCC
Q 039706 984 LDMYLILGVE---SSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDP 1060 (1166)
Q Consensus 984 ~dyY~iLGl~---~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~ 1060 (1166)
.++|.+|||+ ..++..+|.++.++..++||||+... .|+ ...+.-|+.|..||+||+|+
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa------~g~------------~~~d~fFk~iqkA~evL~D~ 104 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAA------GGN------------KGCDEFFKLIQKAREVLGDR 104 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhc------cCC------------CCcHHHHHHHHHHHHHhccH
Confidence 5899999987 46889999999999999999999631 122 35678899999999999999
Q ss_pred chhcccchh
Q 039706 1061 SKRSRYDLE 1069 (1166)
Q Consensus 1061 ~kR~~YD~~ 1069 (1166)
.+|..||.-
T Consensus 105 ~~R~qyDS~ 113 (379)
T COG5269 105 KLRLQYDSN 113 (379)
T ss_pred HHHhhcccc
Confidence 999999973
No 268
>PRK15331 chaperone protein SicA; Provisional
Probab=97.74 E-value=0.0004 Score=71.86 Aligned_cols=88 Identities=9% Similarity=0.079 Sum_probs=79.6
Q ss_pred HhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhh
Q 039706 707 QNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKH 786 (1166)
Q Consensus 707 ~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~ 786 (1166)
..+..|++++|...|.-+...+|.+++.++.+|.|+..+++|++|+..|..+..+.++++.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p------------------ 107 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP------------------ 107 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc------------------
Confidence 34458999999999999999999999999999999999999999999999999998877654
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039706 787 VSFRLWRCCLIFKSYFTLGRLEEAIAALERHES 819 (1166)
Q Consensus 787 ~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~ 819 (1166)
.+..|.+|+.+|+.+.|+..|+.++.
T Consensus 108 -------~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 -------VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred -------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34589999999999999999998755
No 269
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.0023 Score=69.11 Aligned_cols=103 Identities=15% Similarity=0.031 Sum_probs=73.1
Q ss_pred hhhHHHHHc-CChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH-------HH
Q 039706 844 SAGNEAFQA-GRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL-------KA 913 (1166)
Q Consensus 844 ~lG~~~~~~-G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~-------~A 913 (1166)
.+|.+|-.. .++++||.+|++|-+... +.....-.++...|..-..+++|.+|+..|+++....-++. ..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 346665544 788888888888866432 12223345666677777789999999999999887654332 23
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
++.-|.|++...|.-.|...+++..+++|.-.+
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 455678888888988899999999988887644
No 270
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.69 E-value=0.004 Score=65.18 Aligned_cols=130 Identities=14% Similarity=0.085 Sum_probs=104.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
+.|+..+..+|++.+|..+|++++... -..+...++.+++..+..+++.+|...+++..+.++...
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~-------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r- 158 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGI-------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR- 158 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccc-------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC-
Confidence 468999999999999999999974311 112345567789999999999999999999998875433
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.+.....+|.+|..+|++.+|...|+.++...|. +.+....+..+..+|+..+|...|..+...
T Consensus 159 -~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 159 -SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred -CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3334455688999999999999999999999886 678888899999999999998877766644
No 271
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.032 Score=65.73 Aligned_cols=318 Identities=15% Similarity=0.089 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 610 RLSNRAATRMALG--RMRDALSDCMLAVAIDPDF---LRVQVRAANCHL-ALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 610 ay~nrA~ayl~lG--~y~eAI~~fekALeldP~~---~~A~~~LA~lyl-~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
++..+|..+...+ +...+|.+++..+...|.+ ++.++++|.+++ ...+++.|..++++|..+...-+..+....
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf 88 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKF 88 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhh
Confidence 3566788888888 9999999999999988866 456788887664 578999999999999876433222111111
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChH----HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE----KLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~----~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
+++ ..+..++-.. ...+..|...+.+++++....+ .+++.+|+++.-..++.-|++.+.--.
T Consensus 89 ~a~-------------SlLa~lh~~~-~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga 154 (629)
T KOG2300|consen 89 QAA-------------SLLAHLHHQL-AQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGA 154 (629)
T ss_pred HHH-------------HHHHHHHHHh-cCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccc
Confidence 111 1111111111 1255566666777776664443 345566677766777776666532111
Q ss_pred Hhc-cCCCCC-------------------------ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 039706 760 HFA-EKNSPP-------------------------LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAA 813 (1166)
Q Consensus 760 el~-p~n~~a-------------------------~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~ 813 (1166)
... +...+. ...++.+.+....+.....+.+...+.+-..-|...|+...+...
T Consensus 155 ~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~ 234 (629)
T KOG2300|consen 155 ESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPA 234 (629)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHH
Confidence 000 000000 000011111111111111122222222223345667887776666
Q ss_pred HHHHhc-----CCC-----Cchh-----hhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC--c--
Q 039706 814 LERHES-----GNG-----GKML-----ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH--P-- 874 (1166)
Q Consensus 814 lekAl~-----~~~-----~k~l-----e~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~--p-- 874 (1166)
+++... ..+ .+.+ ....-+....-.+..+..--.--...|-|++|.++-+++|....... +
T Consensus 235 lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~ 314 (629)
T KOG2300|consen 235 LKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLM 314 (629)
T ss_pred HHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccch
Confidence 665322 010 0000 00000101011122222222222466778889888888886542111 1
Q ss_pred ------hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC---CC-------hHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 875 ------FAAICFCNRAAAYKALRHITDAIADCNLAIALD---GN-------YLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 875 ------~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld---P~-------~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
.....+-++..|-.-.|++.+|++....+.+.. |. .+..++.+|.-....+.|++|...|..|+
T Consensus 315 srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~ 394 (629)
T KOG2300|consen 315 SRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEAT 394 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHH
Confidence 123456678888899999999999888777653 43 24456667777777788999999998888
Q ss_pred HHh
Q 039706 939 ALL 941 (1166)
Q Consensus 939 eL~ 941 (1166)
++.
T Consensus 395 k~t 397 (629)
T KOG2300|consen 395 KLT 397 (629)
T ss_pred Hhh
Confidence 764
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0077 Score=65.51 Aligned_cols=140 Identities=12% Similarity=0.093 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q 039706 642 LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVI 721 (1166)
Q Consensus 642 ~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~l 721 (1166)
...|...+.+|....++++|..++.+|.+-..++. ..-.+...+..+..++. ....+.++..+|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--------------slfhAAKayEqaamLak--e~~klsEvvdl~ 94 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--------------SLFHAAKAYEQAAMLAK--ELSKLSEVVDLY 94 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--------------cHHHHHHHHHHHHHHHH--HHHHhHHHHHHH
Confidence 34566778888888999999998888875332211 11111222222222222 345566667777
Q ss_pred HHHHHhC-----CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHH
Q 039706 722 DEALFIS-----SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCL 796 (1166)
Q Consensus 722 ekALel~-----P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~l 796 (1166)
++|..+. |+....-+.+|.-.+..-+.++|+++|++++.+-...... . ....++..
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~-------------~------ma~el~gk 155 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRD-------------Q------MAFELYGK 155 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchH-------------H------HHHHHHHH
Confidence 7766543 4444444455555666777888888888887764432111 0 01112334
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 039706 797 IFKSYFTLGRLEEAIAALER 816 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lek 816 (1166)
.+++|..+.++++|-..+.+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHH
Confidence 55666666666666665554
No 273
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0084 Score=64.87 Aligned_cols=173 Identities=14% Similarity=0.045 Sum_probs=97.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCChH------HHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 710 TSNDAEIALGVIDEALFISSYSE------KLLEMKAEALFML-RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~------~al~~lA~~y~~l-GdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
+..+.++|+.++++++++..+-. ..+..+|++|..- .++++||.+|+++-+........ .
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~-------------s 151 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV-------------S 151 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh-------------h
Confidence 35678888888888888765432 3455788888765 99999999999998775432110 0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
...- .+...+..-..+++|.+|+..|++.....-+..+. ....-..++..|.+++-..+.-.|...+
T Consensus 152 sANK------C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL-------Kys~KdyflkAgLChl~~~D~v~a~~AL 218 (288)
T KOG1586|consen 152 SANK------CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL-------KYSAKDYFLKAGLCHLCKADEVNAQRAL 218 (288)
T ss_pred hHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-------HhHHHHHHHHHHHHhHhcccHHHHHHHH
Confidence 0001 11234555567899999999999953322221110 1111223344566667667776666666
Q ss_pred HHHHhccccCC-chhHHHHHHHHHHHH--HhhchhHHHHHHHHHHHhCC
Q 039706 863 TAALSCTVESH-PFAAICFCNRAAAYK--ALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 863 ~kALel~~e~~-p~~a~a~~nlA~ay~--~lGq~eeAi~~lekALeldP 908 (1166)
++..+++|.-. ......+-.|..+.. ....+.+++..|+....+|.
T Consensus 219 eky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~ 267 (288)
T KOG1586|consen 219 EKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQ 267 (288)
T ss_pred HHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHH
Confidence 77666663211 111222222222221 22345566666665555543
No 274
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.60 E-value=0.054 Score=68.39 Aligned_cols=302 Identities=13% Similarity=0.023 Sum_probs=185.4
Q ss_pred HHHHHHHHHHH-HcCChHHHHHHHHHHHHhC--CCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch-hHHH
Q 039706 609 WRLSNRAATRM-ALGRMRDALSDCMLAVAID--PDFL----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVC-VDQK 680 (1166)
Q Consensus 609 ~ay~nrA~ayl-~lG~y~eAI~~fekALeld--P~~~----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~-~a~~ 680 (1166)
..++.+|.+|+ ...+++.|...+++++.+. ++.. .+.+.++.+|.+.+... |+..++++++...... ..+.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 44677888888 6788999999999998776 4433 34566788888887777 8888888887432210 0000
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC--CChHH----HHHHHHHHHHHccCHHHHHHH
Q 039706 681 IAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS--SYSEK----LLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 681 ~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~--P~~~~----al~~lA~~y~~lGdyeeAi~~ 754 (1166)
.++..+...+ ....+++..|++.++.+.... ..++. +....+.+++..+..+++++.
T Consensus 139 ----------------~~frll~~~l-~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~ 201 (608)
T PF10345_consen 139 ----------------YAFRLLKIQL-ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLEL 201 (608)
T ss_pred ----------------HHHHHHHHHH-HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 0111110111 111279999999999988765 33332 234456666777878889999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc------CCC--Cc-h
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES------GNG--GK-M 825 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~------~~~--~k-~ 825 (1166)
+++++...... +.++.. .......|.+.+--.++...|++..+...+++... ..+ .. .
T Consensus 202 l~~~~~~~~~~-----------q~~~~~--~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~ 268 (608)
T PF10345_consen 202 LQRAIAQARSL-----------QLDPSV--HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWD 268 (608)
T ss_pred HHHHHHHHhhc-----------ccCCCC--CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcC
Confidence 98886554322 012222 22344455555555567788888777776655321 111 00 0
Q ss_pred hhhhhhh-------------------ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC-------c-----
Q 039706 826 LESLIPL-------------------AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH-------P----- 874 (1166)
Q Consensus 826 le~a~~L-------------------~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~-------p----- 874 (1166)
-+..+++ ....-.+..+.--|..+...+..+.|.+++.+++..-.... +
T Consensus 269 ~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~ 348 (608)
T PF10345_consen 269 EDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSE 348 (608)
T ss_pred CCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHH
Confidence 0001111 11111244455557777788888889888888876532111 0
Q ss_pred ----------hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC---C------ChHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 875 ----------FAAICFCNRAAAYKALRHITDAIADCNLAIALD---G------NYLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 875 ----------~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld---P------~~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
....++..++.+..-++++..|......+.... | -.+..++..|..+...|+.+.|...|.
T Consensus 349 ~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 349 ASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 012344567777888899999999888777653 2 246778889999999999999999999
Q ss_pred HHHHHh
Q 039706 936 RLIALL 941 (1166)
Q Consensus 936 kALeL~ 941 (1166)
+.+-..
T Consensus 429 ~~~~~~ 434 (608)
T PF10345_consen 429 KPRFLL 434 (608)
T ss_pred hhHHhh
Confidence 655443
No 275
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.59 E-value=0.043 Score=69.10 Aligned_cols=207 Identities=16% Similarity=0.093 Sum_probs=140.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCc
Q 039706 710 TSNDAEIALGVIDEALFISSY---------SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDS 780 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~---------~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~ 780 (1166)
...++.+|-..+.++...-+. ...+...+|.+....++.++|+.+.+.++..-|.+..
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~------------- 493 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY------------- 493 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc-------------
Confidence 367788887777776554322 2356678899999999999999999999998776543
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC--ChHHH
Q 039706 781 SESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG--RHSEA 858 (1166)
Q Consensus 781 ~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G--~yeEA 858 (1166)
+.++..+..++.+.+-.|++++|+.+.+.+.+. +.......-.++.....+.++..+| .+++.
T Consensus 494 -------~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~--------a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~ 558 (894)
T COG2909 494 -------RSRIVALSVLGEAAHIRGELTQALALMQQAEQM--------ARQHDVYHLALWSLLQQSEILEAQGQVARAEQ 558 (894)
T ss_pred -------hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH--------HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 234444577899999999999999999886331 1112223344566667788888888 34444
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC----CC--hH-HHHHHHHHHHHHhhCHHHHH
Q 039706 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD----GN--YL-KAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld----P~--~~-~A~~~LA~ay~~lGdyeeAi 931 (1166)
...|...-.......+........++.++..--+++.+.....+.+++- |. .. -+++.++.++...|++++|.
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~ 638 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL 638 (894)
T ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4444443332222334444455556666555555888887777777663 22 22 23358999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 039706 932 SDFHRLIALLTKQ 944 (1166)
Q Consensus 932 ~~yekALeL~P~~ 944 (1166)
..+.+...+.-..
T Consensus 639 ~~l~~~~~l~~~~ 651 (894)
T COG2909 639 AQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHhcCC
Confidence 9999988775443
No 276
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.57 E-value=0.0017 Score=64.22 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
-+-|.++...|+++.|++.|.+++.. -+..+.+|.+.+..+.-+|+.++|++.+++|+++......
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l--------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr 112 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCL--------------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR 112 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHh--------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence 44677888999999999999998443 3445778899999999999999999999999999855555
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~ 912 (1166)
....+|+.+|.+|..+|+.+.|..+|+.|-++...++.
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 66778999999999999999999999999988765443
No 277
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=8.8e-05 Score=77.07 Aligned_cols=66 Identities=32% Similarity=0.551 Sum_probs=58.0
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
.++.|++|.+.+..+.++|++.||++.+-.||||++.. ++.|...|-.+..||..|-|+.-
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd-------------------~~rAqkAFdivkKA~k~l~n~~~ 112 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD-------------------AERAQKAFDIVKKAYKLLENDKI 112 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc-------------------HHHHHHHHHHHHHHHHHHhCHHH
Confidence 46899999999999999999999999999999999743 46899999999999999998886
Q ss_pred hcccc
Q 039706 1063 RSRYD 1067 (1166)
Q Consensus 1063 R~~YD 1067 (1166)
|.+-+
T Consensus 113 rkr~~ 117 (250)
T KOG1150|consen 113 RKRCL 117 (250)
T ss_pred HHHHH
Confidence 55543
No 278
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.55 E-value=0.016 Score=64.12 Aligned_cols=173 Identities=15% Similarity=0.080 Sum_probs=107.9
Q ss_pred cCCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYS---EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKH 786 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~---~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~ 786 (1166)
..|+|.+|+..|+.+....|.. ..+.+.++.++++.++|++|+..+++-+.+.|.++.+
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~------------------ 107 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA------------------ 107 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh------------------
Confidence 4899999999999999888754 5889999999999999999999999999999988664
Q ss_pred hhhhhHHHHHHHHHHHHc-----CC---HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 787 VSFRLWRCCLIFKSYFTL-----GR---LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 787 ~~~~~wr~~lLA~ay~~l-----Gd---~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
.+.+++.|.+++.. .+ ..+|+..++..+..-|+..... ++ ..=
T Consensus 108 ----dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~---------dA----------------~~~ 158 (254)
T COG4105 108 ----DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP---------DA----------------KAR 158 (254)
T ss_pred ----hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh---------hH----------------HHH
Confidence 12245566665432 12 2344444444433333211100 00 000
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
+..+...| +.-=..+|..|.+.|.|..|+..++.+++.-|+. .+++..+..+|..+|-.++|... .
T Consensus 159 i~~~~d~L----------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~ 227 (254)
T COG4105 159 IVKLNDAL----------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-A 227 (254)
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-H
Confidence 11111111 1112235566777777777777777777765543 45677777777777777777654 3
Q ss_pred HHHHH
Q 039706 936 RLIAL 940 (1166)
Q Consensus 936 kALeL 940 (1166)
++|..
T Consensus 228 ~vl~~ 232 (254)
T COG4105 228 KVLGA 232 (254)
T ss_pred HHHHh
Confidence 44433
No 279
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.2 Score=59.38 Aligned_cols=310 Identities=15% Similarity=0.058 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCchhHHHHH
Q 039706 609 WRLSNRAATRMALG-RMRDALSDCMLAVAIDPDFL----RVQVRAANCHLALGEIEDASKYFRMCLQS-GSDVCVDQKIA 682 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG-~y~eAI~~fekALeldP~~~----~A~~~LA~lyl~lGd~eeAl~~fekALel-~P~n~~a~~~l 682 (1166)
.++..+|.+|.... .+..|...+++||++...++ +..++||.++.-..++..|++.+.-.... ++-.....+.+
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ 168 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRML 168 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHH
Confidence 45677899999887 88999999999999876553 56788999999999999999875322221 11111111111
Q ss_pred HHHH-----HHhhhHHhHHHHHHHHHHH-----------------------HHhhcCCCHHHH---HHHHHHHHHh-CCC
Q 039706 683 VEAS-----DGLQKAQKVSECMQRSAQL-----------------------LQNKTSNDAEIA---LGVIDEALFI-SSY 730 (1166)
Q Consensus 683 ~Ea~-----~~L~k~~~~~e~~~~a~~~-----------------------l~~~~~gd~eeA---Le~lekALel-~P~ 730 (1166)
.-+. ..-.+...+......++.. ..+...|+...+ +..++..+.. .+.
T Consensus 169 ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~ 248 (629)
T KOG2300|consen 169 FTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS 248 (629)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Confidence 0000 0000111111111111111 112234444443 3334433321 111
Q ss_pred ------------hHH--HHHH----HHHHH-------HHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhh
Q 039706 731 ------------SEK--LLEM----KAEAL-------FMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTK 785 (1166)
Q Consensus 731 ------------~~~--al~~----lA~~y-------~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~ 785 (1166)
.+. .|.- -+.+| +..|-+++|+++-++++....+.... +. ...-
T Consensus 249 ~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~----------d~-~sri 317 (629)
T KOG2300|consen 249 SRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQA----------DL-MSRI 317 (629)
T ss_pred CCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccc----------cc-hhHH
Confidence 011 1111 11222 23477889999999988775443332 10 0011
Q ss_pred hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 786 HVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES---GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 786 ~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~---~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
...++...+-.++.+-.-.|++.+|+..+..+.. ..+.+ +......+..+..+|.....-+.|+.|...|
T Consensus 318 lsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~-------~Llr~~~~~ih~LlGlys~sv~~~enAe~hf 390 (629)
T KOG2300|consen 318 LSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTP-------LLLRAHEAQIHMLLGLYSHSVNCYENAEFHF 390 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCch-------HHHHHhHHHHHHHHhhHhhhcchHHHHHHHH
Confidence 1122223344566777889999999998887533 22221 2223344556677788888999999999999
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH-hCCCh----------HHHHHHHHHHHHHhhCHHHHH
Q 039706 863 TAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA-LDGNY----------LKAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALe-ldP~~----------~~A~~~LA~ay~~lGdyeeAi 931 (1166)
..|+++. +.....+.+-.|+|.+|...++-+. +.++++ +.|.+ ..+++-.|...+..+++.||.
T Consensus 391 ~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK 465 (629)
T KOG2300|consen 391 IEATKLT-ESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAK 465 (629)
T ss_pred HHHHHhh-hHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999875 2223445666789999999776443 333333 34442 346777888888999999999
Q ss_pred HHHHHHHHHh
Q 039706 932 SDFHRLIALL 941 (1166)
Q Consensus 932 ~~yekALeL~ 941 (1166)
..+++.+++.
T Consensus 466 ~~l~e~Lkma 475 (629)
T KOG2300|consen 466 RFLRETLKMA 475 (629)
T ss_pred HHHHHHHhhc
Confidence 9999999875
No 280
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0005 Score=77.31 Aligned_cols=90 Identities=26% Similarity=0.409 Sum_probs=72.8
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
.|.-|+..|...|+.+-.+... .+..|.|||++.+.+|+|..||.+|.+|+.++|.+.+++++-|.|++.+
T Consensus 96 ryk~A~~~Yt~Glk~kc~D~dl---------navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 96 RYKDAVESYTEGLKKKCADPDL---------NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred hHHHHHHHHHHHHhhcCCCccH---------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 3455666666666644332211 1235899999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCC
Q 039706 656 GEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~ 674 (1166)
.++++|..+.+..++++-+
T Consensus 167 e~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHhhhhhhhHH
Confidence 9999999999998876544
No 281
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00097 Score=72.79 Aligned_cols=138 Identities=10% Similarity=0.025 Sum_probs=112.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cC
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ES 872 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~ 872 (1166)
+.++.++.-.++|.-.+..+.+.+..++ +.+......+|.+.++.|+.+.|..+|++.-+.+. ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~-------------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~ 247 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYP-------------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG 247 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCC-------------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc
Confidence 4466677778899999999988654332 22344455679999999999999999996543321 12
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
......+..+.+.+|.-.+++..|...+.+++..||.++.+..+.|.|++.+|+..+|++.++.+++..|...
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3455678888999999999999999999999999999999999999999999999999999999999988764
No 282
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.46 E-value=0.00012 Score=86.07 Aligned_cols=98 Identities=22% Similarity=0.229 Sum_probs=85.0
Q ss_pred CCCCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039706 574 LKGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHL 653 (1166)
Q Consensus 574 ~~~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl 653 (1166)
.+.++.|+.-+-++|.++||.|.-+ .+||.+++..++|..|+.++.+||+++|...++|++.|.++.
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~-------------anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYF-------------ANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeee-------------chhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 3556788888888888888866444 459999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 654 ALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 654 ~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
.++++.+|+..|++...+.|+.....+.+.|
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 9999999999999999999997665555444
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.45 E-value=0.063 Score=62.23 Aligned_cols=50 Identities=20% Similarity=0.144 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHh------hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 875 FAAICFCNRAAAYKAL------RHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~l------Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
..+.++..+|.-...+ +..++++..|..|+.++|...++|+.+|..+..+
T Consensus 250 ~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 250 LKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 3456677777777777 7889999999999999999999999999888755
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.011 Score=64.38 Aligned_cols=173 Identities=13% Similarity=0.054 Sum_probs=120.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDF------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
|..-|.+|....+|++|..++.+|++-..++ +++|-..|.++..+..+.++..+|++|..+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~l------------- 100 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL------------- 100 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------------
Confidence 4555677888899999999999999654433 567888888888999999999999998764
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS------EKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~------~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
+..-+..+.+...+.++...+. ..+.++|+.+|++++.+-... .+.+...+++|.++.++.+|...+.+-
T Consensus 101 -Y~E~GspdtAAmaleKAak~le---nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 101 -YVECGSPDTAAMALEKAAKALE---NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred -HHHhCCcchHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 2223333444555666666664 688999999999998764322 356677888999999999998877765
Q ss_pred HHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039706 759 FHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES 819 (1166)
Q Consensus 759 Lel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~ 819 (1166)
..+.-.... -+.. ...+.....+|+...+|..|..+++...+
T Consensus 177 ~~~~~~~~~-----------y~~~--------~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 177 GVAADKCDA-----------YNSQ--------CKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hhHHHHHhh-----------cccH--------HHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 443221100 0000 00112233456667799999999988544
No 285
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.41 E-value=0.018 Score=69.89 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
+.+..+|.-|...|+..+|...|-+|-
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 566778888888888888877765543
No 286
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.40 E-value=0.19 Score=63.32 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=68.1
Q ss_pred chhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 039706 578 RNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGE 657 (1166)
Q Consensus 578 ~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd 657 (1166)
..|.....+-+++-|+..-+-.. .|.++.++|++++|..+++..-...+++...+--+-.||..+++
T Consensus 26 kkal~~~~kllkk~Pn~~~a~vL-------------kaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNALYAKVL-------------KALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHH-------------HHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh
Confidence 34445555556666765444444 78899999999999977777666778888888999999999999
Q ss_pred hHHHHHHHHHHHHcCCC
Q 039706 658 IEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 658 ~eeAl~~fekALel~P~ 674 (1166)
+++|...|++++..+|.
T Consensus 93 ~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS 109 (932)
T ss_pred hhHHHHHHHHHHhhCCc
Confidence 99999999999999998
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.40 E-value=0.033 Score=69.43 Aligned_cols=279 Identities=14% Similarity=-0.017 Sum_probs=179.5
Q ss_pred chhHHHHHHHHHhchHHHHHHHHHHHHHc-----CChHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcC-----C
Q 039706 593 NLASAETIAAQEACEKWRLSNRAATRMAL-----GRMRDALSDCMLAVA-----IDPDFLRVQVRAANCHLALG-----E 657 (1166)
Q Consensus 593 ~~A~a~~~aAIe~~e~~ay~nrA~ayl~l-----G~y~eAI~~fekALe-----ldP~~~~A~~~LA~lyl~lG-----d 657 (1166)
..+..++..+-+.-...+.+.+|.+|+.- .+.+.|+.+|+.+.. ..-.++.+.+.+|.+|.... +
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d 308 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKID 308 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcccc
Confidence 34445566556666667778888888875 589999999999977 11225668899999999853 6
Q ss_pred hHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhCCChHHHHH
Q 039706 658 IEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKT-SNDAEIALGVIDEALFISSYSEKLLE 736 (1166)
Q Consensus 658 ~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~-~gd~eeALe~lekALel~P~~~~al~ 736 (1166)
+..|+.+|.++..+...+. ...++.++.... ..++..|..+|..|... ....+.+
T Consensus 309 ~~~A~~~~~~aA~~g~~~a----------------------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~ 364 (552)
T KOG1550|consen 309 YEKALKLYTKAAELGNPDA----------------------QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIY 364 (552)
T ss_pred HHHHHHHHHHHHhcCCchH----------------------HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHH
Confidence 7889999999988764421 112222222222 35688999999998765 4567888
Q ss_pred HHHHHHHH----ccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHH-cCCHHHHH
Q 039706 737 MKAEALFM----LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT-LGRLEEAI 811 (1166)
Q Consensus 737 ~lA~~y~~----lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~-lGd~eeAl 811 (1166)
.+|.||.. ..+...|..++.++.+..+ +.+ ...++..+.. .+.+..++
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A-------------------------~~~~~~~~~~g~~~~~~~~ 417 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKGN--PSA-------------------------AYLLGAFYEYGVGRYDTAL 417 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhh-------------------------HHHHHHHHHHccccccHHH
Confidence 88888875 3578999999999987752 111 1122322222 26666666
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH-HH---cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHH
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA-FQ---AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAY 887 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~-~~---~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay 887 (1166)
..+.......- ......+..+....... .. ..+...+...|.++.. ..+..+.+.+|.+|
T Consensus 418 ~~~~~~a~~g~----------~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~------~g~~~a~~~lgd~y 481 (552)
T KOG1550|consen 418 ALYLYLAELGY----------EVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA------QGNADAILKLGDYY 481 (552)
T ss_pred HHHHHHHHhhh----------hHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh------ccCHHHHhhhccee
Confidence 55544211000 00000011111111011 11 2256677778877765 45667778888887
Q ss_pred HHh----hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHh
Q 039706 888 KAL----RHITDAIADCNLAIALDGNYLKAISRRATLYEMI---RDYDHAASDFHRLIALL 941 (1166)
Q Consensus 888 ~~l----Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l---GdyeeAi~~yekALeL~ 941 (1166)
..- .+++.|...|.+|.... +.+.+++|.++..- ..+..|..+|.++.+..
T Consensus 482 ~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 482 YYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred eecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 754 45899999999998877 89999999999742 22788888888887653
No 288
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.001 Score=71.96 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=71.4
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
-|+.++..+..+|..+|..+ .+|.|||.+|+++.+++.+..+|.+|++++|+.+++++.+|.+++..
T Consensus 25 ~y~~ai~~y~raI~~nP~~~-------------~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVA-------------SYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred hhchHHHHHHHHHhcCCCcc-------------hhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 35566666666666555533 45677999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHc
Q 039706 656 GEIEDASKYFRMCLQS 671 (1166)
Q Consensus 656 Gd~eeAl~~fekALel 671 (1166)
..|++|+..+.+|+.+
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999999765
No 289
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.35 E-value=0.0057 Score=72.56 Aligned_cols=207 Identities=15% Similarity=0.051 Sum_probs=124.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc---ccCccccc-Cccchhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD---ANGQSMEL-DSSESTK 785 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~---~~g~~l~l-d~~~~~~ 785 (1166)
+..+.+.-++...+||+++|+++.+|..+|+- ...-..+|..+|+++++.......... ..+..... .......
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 35778888999999999999999999888763 233467788888888876554322100 00000000 0000001
Q ss_pred hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHH
Q 039706 786 HVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAA 865 (1166)
Q Consensus 786 ~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kA 865 (1166)
..+. -..+|.+...+|+.++|++.++..++..+ .......+.++...+...+.|.++...+.+.
T Consensus 258 ~~y~----KrRLAmCarklGr~~EAIk~~rdLlke~p------------~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 258 LVYA----KRRLAMCARKLGRLREAIKMFRDLLKEFP------------NLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhh----HHHHHHHHHHhCChHHHHHHHHHHHhhCC------------ccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1111 25588888999999999999988643222 1223445666778888888998888877775
Q ss_pred HhccccCCchhHHHHHHHHHHHHH-hhc---------------hhHHHHHHHHHHHhCCChHHHHHHH------HHHHHH
Q 039706 866 LSCTVESHPFAAICFCNRAAAYKA-LRH---------------ITDAIADCNLAIALDGNYLKAISRR------ATLYEM 923 (1166)
Q Consensus 866 Lel~~e~~p~~a~a~~nlA~ay~~-lGq---------------~eeAi~~lekALeldP~~~~A~~~L------A~ay~~ 923 (1166)
=++ .-|..+...|..|.+..+ .++ -..|++.+.+|++.+|.-++.++.+ -.-+.+
T Consensus 322 dDi---~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilk 398 (539)
T PF04184_consen 322 DDI---SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILK 398 (539)
T ss_pred ccc---cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcC
Confidence 222 235556655555554332 121 1346788888888888877665543 122344
Q ss_pred hhCHHHHHHHHHHHH
Q 039706 924 IRDYDHAASDFHRLI 938 (1166)
Q Consensus 924 lGdyeeAi~~yekAL 938 (1166)
.|| .||+.+---.+
T Consensus 399 rGD-SEAiaYAf~hL 412 (539)
T PF04184_consen 399 RGD-SEAIAYAFFHL 412 (539)
T ss_pred CCc-HHHHHHHHHHH
Confidence 454 66666544433
No 290
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.33 E-value=0.00043 Score=55.92 Aligned_cols=43 Identities=23% Similarity=0.050 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANC 651 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~l 651 (1166)
.+++.+|.+|..+|++++|+..|+++|+.+|++..+|..+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4678899999999999999999999999999999999988863
No 291
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.31 E-value=0.0023 Score=66.95 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhccCC
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRK-----------YEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGd-----------yeeAi~~lekALel~p~n 765 (1166)
+++|+.-|++||.++|+..++++.+|.+|..++. |++|..+|++++..+|.+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5678889999999999999999999999988764 788999999999999876
No 292
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.29 E-value=0.045 Score=66.59 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc---chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG---TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~---~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
.|-..|.+|....++++|+++|++. ....+++.|.. ....+..-..-|.-+...|+++.|+.+|-+|-.+
T Consensus 663 lydkagdlfeki~d~dkale~fkkg------daf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~- 735 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKG------DAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL- 735 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcc------cHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH-
Confidence 3445677778888899999999873 11222332211 1111222223377788889999999888766321
Q ss_pred ccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 870 VESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 870 ~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
..--.+....++|.+|+..++..-... .-...|-.++.-|...|+|+-|.+.|.+
T Consensus 736 -----------~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 736 -----------IKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred -----------HHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHh
Confidence 111223344556666666655433221 1122233445555666666666655544
No 293
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.037 Score=62.22 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
.-+..+...+..|++.+|...|..++...|++..+...+|.||+..|+.+.|...+... |....+.... .
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~-----~- 205 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAH-----G- 205 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHH-----H-
Confidence 34556888999999999999999999999999999999999999999999999887653 3211110000 0
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
+ ...+..+......++. ..+++.+..+|++..+.+.+|..|...|++++|++.+-..+..+...
T Consensus 206 -----l---~a~i~ll~qaa~~~~~----~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 206 -----L---QAQIELLEQAAATPEI----QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred -----H---HHHHHHHHHHhcCCCH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 0 0001111111123333 33556777899999999999999999999999999998888776543
No 294
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.18 E-value=0.014 Score=69.45 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=43.8
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 039706 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~ 672 (1166)
...+..+.++-++...+||+++|+.+.||..||.-.. .-..+|..+|+++++..
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAg 230 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAG 230 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHH
Confidence 3345678899999999999999999999998876433 34788999999988753
No 295
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.18 E-value=0.11 Score=63.46 Aligned_cols=125 Identities=18% Similarity=0.051 Sum_probs=95.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHH
Q 039706 804 LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNR 883 (1166)
Q Consensus 804 lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nl 883 (1166)
....+.|.+.++.....- +..+..+...|..+...|+.++|++.|++++.....-......+++.+
T Consensus 246 ~~~~~~a~~lL~~~~~~y--------------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El 311 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--------------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFEL 311 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHH
Confidence 345677777777753333 334556677899999999999999999999865444445677899999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHhhCH-------HHHHHHHHHHHHHhh
Q 039706 884 AAAYKALRHITDAIADCNLAIALDGNY-LKAISRRATLYEMIRDY-------DHAASDFHRLIALLT 942 (1166)
Q Consensus 884 A~ay~~lGq~eeAi~~lekALeldP~~-~~A~~~LA~ay~~lGdy-------eeAi~~yekALeL~P 942 (1166)
|.++..+.+|++|..++.+.++.+.-. +-..+..|.||..+++. ++|...|+++-.+..
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999876543 33445678999999999 666666666655543
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.13 E-value=0.00067 Score=51.30 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPD 640 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~ 640 (1166)
.+|+++|.+|+.+|++++|+.+|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777788888888888888888777775
No 297
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.12 E-value=0.00073 Score=54.57 Aligned_cols=42 Identities=26% Similarity=0.180 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
.+|..+|.+|..+|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999999988875
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.11 E-value=0.00046 Score=52.80 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 039706 630 DCMLAVAIDPDFLRVQVRAANCHLALGEIEDASK 663 (1166)
Q Consensus 630 ~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~ 663 (1166)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999963
No 299
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.10 E-value=0.0095 Score=60.53 Aligned_cols=106 Identities=18% Similarity=0.062 Sum_probs=80.4
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccC-----Cc-------------hhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVES-----HP-------------FAAICFCNRAAAYKALRHITDAIADCNLA 903 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~-----~p-------------~~a~a~~nlA~ay~~lGq~eeAi~~lekA 903 (1166)
+...|......++...++..+.+++.+.... .. ....++..++..+...|++++|+..+.++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3334666677888999999999999876210 01 11334456777788999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 904 IALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 904 LeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
+.++|.+-.+|..+-.+|..+|++.+|+..|+++.....+....
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999887776553
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.07 E-value=0.00096 Score=50.42 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~ 909 (1166)
.+|+++|.+|..+|++++|+.+|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.95 E-value=0.0007 Score=51.81 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=28.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHH
Q 039706 899 DCNLAIALDGNYLKAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 899 ~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi 931 (1166)
+|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378888999999999999999999999988886
No 302
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.91 E-value=0.01 Score=57.87 Aligned_cols=102 Identities=18% Similarity=0.294 Sum_probs=79.5
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccc--------cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-------
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTV--------ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL------- 906 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~--------e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel------- 906 (1166)
.+..|.-.+..|-|++|...|++|+++.. +..-.++.|+..|+.++..+|+|++++...+++|..
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 33446667788999999999999998763 223356889999999999999999999988888854
Q ss_pred CCC----hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 907 DGN----YLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 907 dP~----~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+.+ .+.+.+.+|.++..+|+.++|+..|+.+-++..+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 333 3556788999999999999999999999987443
No 303
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0013 Score=81.82 Aligned_cols=52 Identities=35% Similarity=0.481 Sum_probs=44.6
Q ss_pred cchhhhcccCCC----CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhC
Q 039706 984 LDMYLILGVESS----VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLS 1058 (1166)
Q Consensus 984 ~dyY~iLGl~~~----as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLs 1058 (1166)
.+.|++|.++.+ -..+.|+++|+|+|.||||||++ +-.++|..+++||+.|.
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP-----------------------EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP-----------------------EGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc-----------------------hHHHHHHHHHHHHHHHH
Confidence 478999988743 33588999999999999999986 56689999999999998
No 304
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.3 Score=55.77 Aligned_cols=288 Identities=13% Similarity=0.104 Sum_probs=170.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAI--DPDF--------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALel--dP~~--------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
..++.......++++++..|.+++.. -|.. ..+...++.+|...|++++-....+..-..
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf---------- 77 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPF---------- 77 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH----------
Confidence 45778888888999999999999884 1222 346788999999999998877666553321
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHccCHHHHHHHH
Q 039706 682 AVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS------EKLLEMKAEALFMLRKYEEVIQLC 755 (1166)
Q Consensus 682 l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~------~~al~~lA~~y~~lGdyeeAi~~l 755 (1166)
...+.+...+ .....+..... ...+....-+..+...++..-.. ..+-..++.+|+..++|.+|+...
T Consensus 78 ----~~~v~Kakaa-KlvR~Lvd~~~-~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~ 151 (411)
T KOG1463|consen 78 ----LSSVSKAKAA-KLVRSLVDMFL-KIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALI 151 (411)
T ss_pred ----HHHhhhHHHH-HHHHHHHHHHc-cCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1111111111 11111111111 01222334444444444432211 123356788999999999999988
Q ss_pred HHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccc
Q 039706 756 EQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGT 835 (1166)
Q Consensus 756 ekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~ 835 (1166)
...+.--..... .... +....+=..+|+.+.+..+|...+..|.-... .++-.
T Consensus 152 ~~L~rElKKlDD-------------K~lL------vev~llESK~y~~l~Nl~KakasLTsART~An--------aiYcp 204 (411)
T KOG1463|consen 152 NDLLRELKKLDD-------------KILL------VEVHLLESKAYHALRNLPKAKASLTSARTTAN--------AIYCP 204 (411)
T ss_pred HHHHHHHHhccc-------------ccce------eeehhhhhHHHHHHhcchhHHHHHHHHHHhhc--------ccccC
Confidence 887754332211 1110 01123356788999999999888877532111 11111
Q ss_pred h-HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHHhhchhH--HHHHHHHHHHhCCCh
Q 039706 836 V-RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKALRHITD--AIADCNLAIALDGNY 910 (1166)
Q Consensus 836 ~-~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~lGq~ee--Ai~~lekALeldP~~ 910 (1166)
+ -++..-+.-|..+....+|.-|..+|-+|++-.. ..+..-...+-.+-.|-..++..++ ++-.-..+++.+...
T Consensus 205 PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~ 284 (411)
T KOG1463|consen 205 PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRD 284 (411)
T ss_pred HHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcc
Confidence 1 1222223347777777999999999999987431 1112233344444455556666655 555556778888888
Q ss_pred HHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHhh
Q 039706 911 LKAISRRATLYE--MIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 911 ~~A~~~LA~ay~--~lGdyeeAi~~yekALeL~P 942 (1166)
.+|+...|.++. .+.+|+.|+..|..=+.-+|
T Consensus 285 i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 285 IDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 999999999986 45678888888777665443
No 305
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.80 E-value=0.0033 Score=74.12 Aligned_cols=107 Identities=26% Similarity=0.278 Sum_probs=94.5
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhh---chhHHHHHHHHHHHhCCChHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALR---HITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lG---q~eeAi~~lekALeldP~~~~ 912 (1166)
+..++..+..|+-.+-...+..||.+|.+++... |....+|.++|.++++.+ +.-.|+.+|..|++++|...+
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~----~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k 446 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYV----PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK 446 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhc----cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH
Confidence 4456666777888888889999999999999887 889999999999998764 566799999999999999999
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
||+.|+.++..++++.+|+.+...+....|.+..
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 9999999999999999999999988888886654
No 306
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.032 Score=60.80 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=63.9
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
.+.+...+++..|+|-+++++....|... |.+..+|+.+|.++...=+..+|.+++.++|+++|.-..+..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~----~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH----PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 35567889999999999999999999988 999999999999999999999999999999999997665543
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.78 E-value=0.0027 Score=47.62 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDF 641 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~ 641 (1166)
+|+.+|.+|+.+|+|++|+.+|+++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45666777777777777777777777777653
No 308
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.2 Score=56.91 Aligned_cols=165 Identities=15% Similarity=0.020 Sum_probs=126.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhhh
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS-GSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel-~P~n~~a~~~l~Ea~~~L~k 691 (1166)
-.+..+...|++.+|-...++.|+-.|++.-++..--.+++.+|+...-...+++++-. +++-+-.
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~------------- 174 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY------------- 174 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH-------------
Confidence 34677888999999999999999999999999999999999999999999999998876 5552110
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
.+.....++.....|-|.+|.+..++++++++.+.-+...++.++...+++.++.+...+.-....
T Consensus 175 ------sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-------- 240 (491)
T KOG2610|consen 175 ------SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-------- 240 (491)
T ss_pred ------HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh--------
Confidence 111122222334579999999999999999999999999999999999999999998776532221
Q ss_pred cCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
++.....+ .|...+..|...+.|+.|++.|.+-
T Consensus 241 -------~s~mlasH------NyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 241 -------QSWMLASH------NYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred -------hhhHHHhh------hhHHHHHhhhcccchhHHHHHHHHH
Confidence 11111111 1334667788889999999999873
No 309
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.35 Score=61.50 Aligned_cols=61 Identities=23% Similarity=0.223 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 606 CEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 606 ~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
.++..|..+|.+.+..|...+||+.|-+| +++..|...-.+..+.|.|++-+.++..|.+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 34556777888888888888888777654 44556777777777778888877777776654
No 310
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.73 E-value=0.051 Score=65.18 Aligned_cols=97 Identities=19% Similarity=0.122 Sum_probs=84.8
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchh-HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFA-AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~-a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
.....|+-..|+.++..|+... |.. .....++|.++.+-+...+|-..+.++|.+....+-.++.+|.+|+.+.+
T Consensus 616 ywr~~gn~~~a~~cl~~a~~~~----p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 616 YWRAVGNSTFAIACLQRALNLA----PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred eeeecCCcHHHHHHHHHHhccC----hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 3446688899999999999776 332 34567899999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHhh
Q 039706 927 YDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 927 yeeAi~~yekALeL~P~~~e~~ 948 (1166)
.+.|++.|++|+.+.|++++..
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECE 713 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhH
Confidence 9999999999999999987643
No 311
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.72 E-value=0.42 Score=60.61 Aligned_cols=252 Identities=14% Similarity=0.031 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--chhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHH
Q 039706 642 LRVQVRAANCHLALGEIEDASKYFRMCLQSGSD--VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALG 719 (1166)
Q Consensus 642 ~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~--n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe 719 (1166)
+...+..|..+....++++|...+.++...-+. .......+.+ ..+.........++++.|++
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae---------------~~aL~a~val~~~~~e~a~~ 479 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAE---------------FQALRAQVALNRGDPEEAED 479 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHH---------------HHHHHHHHHHhcCCHHHHHH
Confidence 445566678888888999998888877653222 1111111111 11111122234899999999
Q ss_pred HHHHHHHhCCCh-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHH
Q 039706 720 VIDEALFISSYS-----EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRC 794 (1166)
Q Consensus 720 ~lekALel~P~~-----~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~ 794 (1166)
+.+.++..-|.. ..++...+.+..-.|++++|..+..++.+...... ..++..|..
T Consensus 480 lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~-------------------~~~l~~~~~ 540 (894)
T COG2909 480 LARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD-------------------VYHLALWSL 540 (894)
T ss_pred HHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-------------------cHHHHHHHH
Confidence 999999887654 35677889999999999999999999988865432 235667777
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 795 CLIFKSYFTLGRL--EEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 795 ~lLA~ay~~lGd~--eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
+..+.++..+|+. ++....+.... ...+...+.........+.++...-+++.+.......+++-...
T Consensus 541 ~~~s~il~~qGq~~~a~~~~~~~~~~----------~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~ 610 (894)
T COG2909 541 LQQSEILEAQGQVARAEQEKAFNLIR----------EQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY 610 (894)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc
Confidence 8888999999933 23333332210 01111111111111222333333333677766666666543221
Q ss_pred Cc---hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--CC---hH--HHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 873 HP---FAAICFCNRAAAYKALRHITDAIADCNLAIALD--GN---YL--KAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 873 ~p---~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--P~---~~--~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
.+ ....+++.+|.++...|++++|...+.....+- +. +. .++.-........|++++|...+.+.
T Consensus 611 ~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 611 TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 12 223344689999999999999999999887663 21 11 12222233345679999998888773
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.64 E-value=0.0033 Score=47.17 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCCC
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP~ 909 (1166)
+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 313
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.13 Score=58.34 Aligned_cols=159 Identities=12% Similarity=-0.061 Sum_probs=115.5
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-ccCCCCCccccCcccccCccchhhhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF-AEKNSPPLDANGQSMELDSSESTKHVS 788 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel-~p~n~~a~~~~g~~l~ld~~~~~~~~~ 788 (1166)
..|++.+|...++++|.-.|.+.-++..--.+++.+|+...-...+++++.. +++.+- ..|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~------------------~sY 176 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC------------------YSY 176 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH------------------HHH
Confidence 4788889999999999999999888888888999999999988888887754 222211 111
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhc
Q 039706 789 FRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSC 868 (1166)
Q Consensus 789 ~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel 868 (1166)
. .-.++..+...|-|++|.+...++++. +..+.++...++.++...+++.++.+...+--..
T Consensus 177 v----~GmyaFgL~E~g~y~dAEk~A~ralqi--------------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~ 238 (491)
T KOG2610|consen 177 V----HGMYAFGLEECGIYDDAEKQADRALQI--------------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD 238 (491)
T ss_pred H----HHHHHhhHHHhccchhHHHHHHhhccC--------------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc
Confidence 1 234666778889999999999887443 3345677777788889999999999887765332
Q ss_pred cccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 039706 869 TVESHPFAAICFCNRAAAYKALRHITDAIADCNLAI 904 (1166)
Q Consensus 869 ~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekAL 904 (1166)
-....-....-|..-|.+|..-+.|+.|++.|++-+
T Consensus 239 Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 239 WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 111111223345567888888899999999998765
No 314
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.041 Score=58.46 Aligned_cols=105 Identities=11% Similarity=0.085 Sum_probs=82.4
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh-HHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY-LKAIS 915 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~-~~A~~ 915 (1166)
.-....+.++..++..+++++|+..++.++.... .....+.+-.++|.+..++|++++|+..++..-. +.. +..-.
T Consensus 87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~e 163 (207)
T COG2976 87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTK-DENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAE 163 (207)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHH
Confidence 3355667789999999999999999999996531 1234456677899999999999999999886542 222 23355
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 916 RRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 916 ~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.+|.++...|+-++|+..|+++++..+..
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 68999999999999999999999876443
No 315
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.52 E-value=1.4 Score=55.72 Aligned_cols=318 Identities=13% Similarity=0.004 Sum_probs=174.9
Q ss_pred hCcchhHHHHHHHHHhchH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHc
Q 039706 590 QEPNLASAETIAAQEACEK--------WRLSNRAATRMALGRMRDALSDCMLAVAIDPD----FLRVQVRA--ANCHLAL 655 (1166)
Q Consensus 590 ~ep~~A~a~~~aAIe~~e~--------~ay~nrA~ayl~lG~y~eAI~~fekALeldP~----~~~A~~~L--A~lyl~l 655 (1166)
.+.+.|..++..|+..|.. .+.+.++.+|.+.+... |+..++++|+.--+ .+...+++ ...++..
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~ 152 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH 152 (608)
T ss_pred CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc
Confidence 3455677788888877753 22355688888888777 99999999986544 22222333 3333344
Q ss_pred CChHHHHHHHHHHHHcCC--CchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC----
Q 039706 656 GEIEDASKYFRMCLQSGS--DVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS---- 729 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P--~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P---- 729 (1166)
+++..|++.++.+..+.. .++. ...+..+..++.....+..+++++.+++++....
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~------------------~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPA------------------VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHH------------------HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 799999999998887542 2111 1111111222222335666677777776643221
Q ss_pred ------ChHHHHHHH--HHHHHHccCHHHHHHHHH---HHHHhccCCC--CCccccCccc-cc------C---ccchh--
Q 039706 730 ------YSEKLLEMK--AEALFMLRKYEEVIQLCE---QTFHFAEKNS--PPLDANGQSM-EL------D---SSEST-- 784 (1166)
Q Consensus 730 ------~~~~al~~l--A~~y~~lGdyeeAi~~le---kALel~p~n~--~a~~~~g~~l-~l------d---~~~~~-- 784 (1166)
....++..+ -.+++..|+++.+...++ +.+....+.. ..|...+.+. .. + +....
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl 294 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWL 294 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeec
Confidence 123334333 335566777766655544 4444333322 0111111110 00 0 00000
Q ss_pred hhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCC-------c---hhhhhhhhc--cchHHHHHHhhhhHHHHHc
Q 039706 785 KHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGG-------K---MLESLIPLA--GTVRELLCRKSAGNEAFQA 852 (1166)
Q Consensus 785 ~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~-------k---~le~a~~L~--~~~~~a~~l~~lG~~~~~~ 852 (1166)
......+..|..-|..++..+..++|.+++++++..-.. . .+..+.... ...-....+..++...+-.
T Consensus 295 ~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~ 374 (608)
T PF10345_consen 295 PKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIR 374 (608)
T ss_pred CHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHC
Confidence 000111233444566777778777888888886541110 0 000000000 0011233445568888999
Q ss_pred CChHHHHHHHHHHHhccccC-----CchhHHHHHHHHHHHHHhhchhHHHHHHH--------HHHHhCCC---hHHHHHH
Q 039706 853 GRHSEAVEHYTAALSCTVES-----HPFAAICFCNRAAAYKALRHITDAIADCN--------LAIALDGN---YLKAISR 916 (1166)
Q Consensus 853 G~yeEAie~y~kALel~~e~-----~p~~a~a~~nlA~ay~~lGq~eeAi~~le--------kALeldP~---~~~A~~~ 916 (1166)
++|..|......+....... ....+.+++..|..+...|+.+.|+..|. .+....+. ..-+.++
T Consensus 375 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LN 454 (608)
T PF10345_consen 375 GDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALN 454 (608)
T ss_pred cCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHH
Confidence 99999999998887654211 23457788999999999999999999998 33333333 2345566
Q ss_pred HHHHHHHhhC
Q 039706 917 RATLYEMIRD 926 (1166)
Q Consensus 917 LA~ay~~lGd 926 (1166)
+..++...+.
T Consensus 455 l~~I~~~~~~ 464 (608)
T PF10345_consen 455 LAIILQYESS 464 (608)
T ss_pred HHHHhHhhcc
Confidence 7777775554
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.50 E-value=1.8 Score=50.19 Aligned_cols=137 Identities=13% Similarity=-0.011 Sum_probs=93.7
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHH
Q 039706 729 SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLE 808 (1166)
Q Consensus 729 P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~e 808 (1166)
......+...+.+..+.|.++.|...+.++....+..... .+. .....++++...|+..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~----------~~~-----------v~~e~akllw~~g~~~ 201 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL----------LPR-----------VFLEYAKLLWAQGEQE 201 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC----------Ccc-----------hHHHHHHHHHHcCCHH
Confidence 3556788999999999999999999999988765433210 000 1234678889999999
Q ss_pred HHHHHHHHHhcCCCCch--------hhhh------------hhhccchHHHHHHhhhhHHHHHc------CChHHHHHHH
Q 039706 809 EAIAALERHESGNGGKM--------LESL------------IPLAGTVRELLCRKSAGNEAFQA------GRHSEAVEHY 862 (1166)
Q Consensus 809 eAl~~lekAl~~~~~k~--------le~a------------~~L~~~~~~a~~l~~lG~~~~~~------G~yeEAie~y 862 (1166)
+|+..++..+....... +... .........+..+..+|...... +.+++++..|
T Consensus 202 ~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~ 281 (352)
T PF02259_consen 202 EAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYY 281 (352)
T ss_pred HHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 99999988655111110 0000 01111223355666677777777 8999999999
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHh
Q 039706 863 TAALSCTVESHPFAAICFCNRAAAYKAL 890 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA~ay~~l 890 (1166)
.+|+.++ |....+|+..|..+..+
T Consensus 282 ~~a~~~~----~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 282 KEATKLD----PSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHhC----hhHHHHHHHHHHHHHHH
Confidence 9999988 77778888888776544
No 317
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.50 E-value=0.11 Score=63.39 Aligned_cols=124 Identities=18% Similarity=0.036 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
....+.|...++..++..|+..-.++..|+++...|+.++|++.+++++......
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~------------------------- 300 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW------------------------- 300 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-------------------------
Confidence 4566777777777777778777777777777777777777777777766321100
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
++. ....+..+|..+.-..+|++|..+|.+.++.+
T Consensus 301 -------------------------------------------~Ql-~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s- 335 (468)
T PF10300_consen 301 -------------------------------------------KQL-HHLCYFELAWCHMFQHDWEEAAEYFLRLLKES- 335 (468)
T ss_pred -------------------------------------------HhH-HHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-
Confidence 000 12234556788888888888888888888754
Q ss_pred cCCchhHHHHHHHHHHHHHhhch-------hHHHHHHHHHHHh
Q 039706 871 ESHPFAAICFCNRAAAYKALRHI-------TDAIADCNLAIAL 906 (1166)
Q Consensus 871 e~~p~~a~a~~nlA~ay~~lGq~-------eeAi~~lekALel 906 (1166)
.-..+...|..|.|+..+++. ++|.+.+.++-.+
T Consensus 336 --~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 336 --KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred --ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 234566677788889999988 6777777666544
No 318
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.50 E-value=0.14 Score=60.19 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=63.5
Q ss_pred HHhhcCCCHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 706 LQNKTSNDAEIALGVIDEALFI----SSYSEKLLEMKAEALFM---LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 706 l~~~~~gd~eeALe~lekALel----~P~~~~al~~lA~~y~~---lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
+.++...+|+.-+.+++.+-.+ -+....+...+|.++.+ .|+.++|+..+..++.......+
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~----------- 217 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP----------- 217 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh-----------
Confidence 3355677888888888776655 35567888999999999 99999999999997654332211
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHH---------cCCHHHHHHHHHHHhcCCC
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFT---------LGRLEEAIAALERHESGNG 822 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~---------lGd~eeAl~~lekAl~~~~ 822 (1166)
..+.++|.+|-. ...+++|+..|.++....+
T Consensus 218 -------------d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 218 -------------DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred -------------HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 013455665532 2247788888888755443
No 319
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.46 E-value=3.4 Score=50.18 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=70.7
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHH-HHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 844 SAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAA-AYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 844 ~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~-ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
..-+...+..-...|...|.+|-+.. .....+|..-|. -|...++..-|...|+..|...++.+..-+....-+.
T Consensus 371 ~~mn~irR~eGlkaaR~iF~kaR~~~----r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 371 QYMNFIRRAEGLKAARKIFKKAREDK----RTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhcc----CCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 33455556667788888888886543 111233332232 3668899999999999999999999888888888889
Q ss_pred HhhCHHHHHHHHHHHHHH
Q 039706 923 MIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 923 ~lGdyeeAi~~yekALeL 940 (1166)
.+++-..|...|++++..
T Consensus 447 ~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTS 464 (656)
T ss_pred HhCcchhHHHHHHHHHhc
Confidence 999999999999999976
No 320
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.44 E-value=0.09 Score=53.35 Aligned_cols=114 Identities=20% Similarity=0.211 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH---HHHH-HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHH
Q 039706 644 VQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ---KIAV-EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALG 719 (1166)
Q Consensus 644 A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~---~~l~-Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe 719 (1166)
.+...|......++.+.++..+++++.+........ ..+. .....+.. ....+...+... ....|++++|+.
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~--~~~~~~~~l~~~--~~~~~~~~~a~~ 83 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRE--LYLDALERLAEA--LLEAGDYEEALR 83 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHH--HHHHHHHHHHHH--HHHTT-HHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHH--HHHHHHHHHHHH--HHhccCHHHHHH
Confidence 344556666777888888888888888754321110 0010 11111111 011122222222 235899999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 720 VIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 720 ~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
.+++++.++|.+..++..+..+|..+|++.+|+..|+++...
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988655
No 321
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.36 E-value=0.73 Score=52.45 Aligned_cols=135 Identities=17% Similarity=0.061 Sum_probs=91.0
Q ss_pred HHcCChHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcC----CCchhHHHHHHHH
Q 039706 619 MALGRMRDALSDCMLAVAID----PDF----LRVQVRAANCHLALG-EIEDASKYFRMCLQSG----SDVCVDQKIAVEA 685 (1166)
Q Consensus 619 l~lG~y~eAI~~fekALeld----P~~----~~A~~~LA~lyl~lG-d~eeAl~~fekALel~----P~n~~a~~~l~Ea 685 (1166)
...|+++.|..++.++-.+. |+. ...++..|..++..+ +++.|..++++++++- +..... ....+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~-~~~~e- 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLS-PDGSE- 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccC-CcHHH-
Confidence 46789999999999886544 433 456788888888999 9999999999999862 110000 00000
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA 762 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~ 762 (1166)
.+..-+...+..++.......+++|+.+++.+-...|+.+.++.+.-.++...++.+++.+.+.+++...
T Consensus 82 -------lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 82 -------LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred -------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 0111111222222322233456678888888878889988888888888888999999999999988653
No 322
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.32 E-value=0.0036 Score=70.99 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=75.6
Q ss_pred hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhh
Q 039706 708 NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHV 787 (1166)
Q Consensus 708 ~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~ 787 (1166)
....|.++.||+++..+|.++|....+|..++.++++++++..||..|..++.++|+....
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~------------------- 184 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKG------------------- 184 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccc-------------------
Confidence 3458999999999999999999999999999999999999999999999999999876543
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 788 SFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 788 ~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
|...+.+...+|++++|...++.+
T Consensus 185 ------ykfrg~A~rllg~~e~aa~dl~~a 208 (377)
T KOG1308|consen 185 ------YKFRGYAERLLGNWEEAAHDLALA 208 (377)
T ss_pred ------cchhhHHHHHhhchHHHHHHHHHH
Confidence 233677888899999999999886
No 323
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.22 E-value=0.057 Score=61.53 Aligned_cols=131 Identities=12% Similarity=0.006 Sum_probs=97.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH-cCChHHHHHHHHHHHhccccCCc
Q 039706 796 LIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ-AGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 796 lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~-~G~yeEAie~y~kALel~~e~~p 874 (1166)
.+.....+.+..+.|..+|.+|+..... ....|...|.+.+. .++.+.|...|+.+++.. +
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~--------------~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f----~ 67 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRC--------------TYHVYVAYALMEYYCNKDPKRARKIFERGLKKF----P 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS---------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH----T
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCC--------------CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC----C
Confidence 3446666677799999999998532221 12234444666566 566666999999999987 7
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH---HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL---KAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~---~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.+..+|......+..+++.+.|...|++++..-|... ..|......-...|+.+.....++++.++.|+.
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 7888888888889999999999999999998876655 567777777778899999999999999988874
No 324
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=1.1 Score=55.11 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=28.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 633 LAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 633 kALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
+-++-+| +++.|..+|...+..-.++-|...|-++-.
T Consensus 684 qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 684 QFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred HHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 3345455 678999999999888888999888877643
No 325
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.17 E-value=0.012 Score=71.03 Aligned_cols=61 Identities=33% Similarity=0.451 Sum_probs=50.0
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhC
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLS 1058 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLs 1058 (1166)
.-++-+.|..-.+..+||++|||+.|.+||||..+. ......+..|++.|-.+.+||+...
T Consensus 389 s~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~-------------gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 389 SGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQK-------------GASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred cCcccCchhhccCHHHHHHHHHhhhheeCcccccCC-------------cccHHHHHHHHHHHHHHHHHHHhhh
Confidence 335556677778899999999999999999999753 1356778999999999999997654
No 326
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.13 E-value=3.6 Score=49.96 Aligned_cols=61 Identities=18% Similarity=0.099 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
.+|+.+-.-+-.. -++++...|++.+..-|..+.+|.......+...+|+.-...|.+||.
T Consensus 21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 21 DSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455555444333 777777777777777777777777777777777777777777777765
No 327
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.013 Score=62.26 Aligned_cols=55 Identities=27% Similarity=0.524 Sum_probs=46.6
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH-HhC
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYA-VLS 1058 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~-vLs 1058 (1166)
-..||.+|||...++..+++.+|.++|.++|||-... +....+|.+|.+||. ||+
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~---------------------~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE---------------------EADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc---------------------cccHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999998541 123357999999994 887
No 328
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.53 Score=59.94 Aligned_cols=215 Identities=13% Similarity=0.081 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHH-
Q 039706 640 DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIAL- 718 (1166)
Q Consensus 640 ~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeAL- 718 (1166)
+.+.+|.++|.+.++.|...+|++.|-+|= +|. ......++.....+++.+..++..+..-.. ....+.++
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikad--Dps---~y~eVi~~a~~~~~~edLv~yL~MaRkk~~---E~~id~eLi 1173 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPS---NYLEVIDVASRTGKYEDLVKYLLMARKKVR---EPYIDSELI 1173 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcH---HHHHHHHHHHhcCcHHHHHHHHHHHHHhhc---CccchHHHH
Confidence 446789999999999999999999998752 343 222222333333333333333322221111 11111111
Q ss_pred ---HHHHHHHH-----hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 719 ---GVIDEALF-----ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 719 ---e~lekALe-----l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
....+.-+ ..|+.+. ....|.-++..+.|+.|.-+|..
T Consensus 1174 ~AyAkt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~--------------------------------- 1219 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSN--------------------------------- 1219 (1666)
T ss_pred HHHHHhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHHH---------------------------------
Confidence 00111110 1222222 22344555555555555544432
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCc-hhhhhh-----hhc-----cchHHHHHHhhhhHHHHHcCChHHHH
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGK-MLESLI-----PLA-----GTVRELLCRKSAGNEAFQAGRHSEAV 859 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k-~le~a~-----~L~-----~~~~~a~~l~~lG~~~~~~G~yeEAi 859 (1166)
+..+..++..+.++|+|..|....++|-....=+ ..-.|+ .+. ...-.++.+-.+.+.|...|-|++-|
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHH
Confidence 2224568888999999999999888863211000 000000 000 01112334445566777888888888
Q ss_pred HHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHH
Q 039706 860 EHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCN 901 (1166)
Q Consensus 860 e~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~le 901 (1166)
.+++.+|.+. ......+..+|.+|.+- ++++-.+.++
T Consensus 1300 sl~Ea~LGLE----RAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1300 SLLEAGLGLE----RAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred HHHHhhhchh----HHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 8888888766 55556666777666543 3444444443
No 329
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.00 E-value=0.65 Score=58.07 Aligned_cols=235 Identities=11% Similarity=0.000 Sum_probs=144.9
Q ss_pred hchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCch
Q 039706 605 ACEKWRLSNRAATRMALG-----RMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG---EIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG-----~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG---d~eeAl~~fekALel~P~n~ 676 (1166)
...+.+.+.+|.+|+... ++..|+..|.++..+ .++.+.+.+|.+|..-. ++..|.++|..|.+..-.
T Consensus 285 ~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-- 360 (552)
T KOG1550|consen 285 KGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-- 360 (552)
T ss_pred hcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh--
Confidence 334556788999999853 788899999998876 46678999999998766 578999999998765422
Q ss_pred hHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH--hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc-cCHHHHHH
Q 039706 677 VDQKIAVEASDGLQKAQKVSECMQRSAQLLQ--NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML-RKYEEVIQ 753 (1166)
Q Consensus 677 ~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~--~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l-GdyeeAi~ 753 (1166)
..+..+..++. .....+...|..++.++.+.. .+.+.+.++.++..- +++..+..
T Consensus 361 --------------------~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~ 418 (552)
T KOG1550|consen 361 --------------------LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALA 418 (552)
T ss_pred --------------------HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHH
Confidence 11112222222 123568899999999999887 334444444444333 77777777
Q ss_pred HHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCchhhhh
Q 039706 754 LCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT----LGRLEEAIAALERHESGNGGKMLESL 829 (1166)
Q Consensus 754 ~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~----lGd~eeAl~~lekAl~~~~~k~le~a 829 (1166)
.+....++.-..... ... + +......+.. ..+.+.+...+.++..
T Consensus 419 ~~~~~a~~g~~~~q~---------------~a~-----~-l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---------- 467 (552)
T KOG1550|consen 419 LYLYLAELGYEVAQS---------------NAA-----Y-LLDQSEEDLFSRGVISTLERAFSLYSRAAA---------- 467 (552)
T ss_pred HHHHHHHhhhhHHhh---------------HHH-----H-HHHhccccccccccccchhHHHHHHHHHHh----------
Confidence 666555443222111 000 0 0000000111 1244555555555311
Q ss_pred hhhccchHHHHHHhhhhHHHHHc----CChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH---hhchhHHHHHHHH
Q 039706 830 IPLAGTVRELLCRKSAGNEAFQA----GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA---LRHITDAIADCNL 902 (1166)
Q Consensus 830 ~~L~~~~~~a~~l~~lG~~~~~~----G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~---lGq~eeAi~~lek 902 (1166)
.....+...+|..|+.- .+++.|...|..|... . +...+++|.++.. ..++..|..++.+
T Consensus 468 ------~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~-----~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 468 ------QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ-----G--AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred ------ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh-----h--hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 11233344456666543 4699999999999753 2 7888899988863 1227889999999
Q ss_pred HHHhCCC
Q 039706 903 AIALDGN 909 (1166)
Q Consensus 903 ALeldP~ 909 (1166)
+.+.+..
T Consensus 535 ~~~~~~~ 541 (552)
T KOG1550|consen 535 ASEEDSR 541 (552)
T ss_pred HHhcCch
Confidence 9887654
No 330
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91 E-value=0.42 Score=51.00 Aligned_cols=117 Identities=10% Similarity=0.102 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCChH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhH
Q 039706 716 IALGVIDEALFISSYSE---KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLW 792 (1166)
Q Consensus 716 eALe~lekALel~P~~~---~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~w 792 (1166)
+.+..+++....++... ...+.+|..+...+++++|+..++.++....+. .+...
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De----------------------~lk~l 127 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE----------------------NLKAL 127 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH----------------------HHHHH
Confidence 33444444444443332 334567777778888888888887777442211 11122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
.-.+|+.+.+.+|.+++|+..+.... ...-........|.++...|+-.+|+..|++|+...
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~---------------~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIK---------------EESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccc---------------cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 23457777888888888887776521 111112222335777777777777777777777654
No 331
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.85 E-value=0.68 Score=54.60 Aligned_cols=127 Identities=11% Similarity=-0.066 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHc-CCCchhH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAI----DPDFLRVQVRAANCHLA---LGEIEDASKYFRMCLQS-GSDVCVD 678 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALel----dP~~~~A~~~LA~lyl~---lGd~eeAl~~fekALel-~P~n~~a 678 (1166)
.+....++=.+|....+|+.=+...+..-.+ -++.....+.+|-++-+ .|+.++|+..+..++.. .+.++..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3344577788899999999888888876665 34567788899999999 99999999999996654 3333333
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC
Q 039706 679 QKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRK 747 (1166)
Q Consensus 679 ~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGd 747 (1166)
..++..++..+-. .. ........++|+..|.++.++.|+ ...-.++|.++...|.
T Consensus 220 ~gL~GRIyKD~~~---------~s----~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFL---------ES----NFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHH---------Hc----CccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 3333333322200 00 000122366777777777777743 2333445555555554
No 332
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.74 E-value=0.68 Score=51.36 Aligned_cols=230 Identities=13% Similarity=0.141 Sum_probs=126.8
Q ss_pred cCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHH
Q 039706 621 LGRMRDALSDCMLAVAIDPDF----LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVS 696 (1166)
Q Consensus 621 lG~y~eAI~~fekALeldP~~----~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~ 696 (1166)
....++|+..|++++++.+.- .+|+-++..+++++++|++-+..|.+.|..-.. . +...+ ..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS-A--------VTrNy-----SE 105 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS-A--------VTRNY-----SE 105 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-H--------Hhccc-----cH
Confidence 458899999999999999865 468899999999999999999999988752110 0 00000 00
Q ss_pred HHHHHHHHHHHhh-----cCCCHHHHHHHHHHHHHhCCChHHHH----HHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 697 ECMQRSAQLLQNK-----TSNDAEIALGVIDEALFISSYSEKLL----EMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 697 e~~~~a~~~l~~~-----~~gd~eeALe~lekALel~P~~~~al----~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
.++..+..+.... -+.-|+..+..+..| .+..+| ..++.+|+..++|.+-...+.++-........
T Consensus 106 KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdA-----KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 106 KSINSILDYISTSKNMDLLQEFYETTLDALKDA-----KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh-----hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1111111111100 011233334433333 223333 46899999999999888887776655443321
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHH-hhhh
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCR-KSAG 846 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l-~~lG 846 (1166)
....+--...+..|.+--..|-.+.+-..-..+|++++.... +++ .+.-.-.. ---|
T Consensus 181 -------------edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKS------AIP---HPlImGvIRECGG 238 (440)
T KOG1464|consen 181 -------------EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKS------AIP---HPLIMGVIRECGG 238 (440)
T ss_pred -------------chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhc------cCC---chHHHhHHHHcCC
Confidence 111110011112223333456666666666677777654221 111 11111111 1126
Q ss_pred HHHHHcCChHHHHHHHHHHHhcc-ccCCchhHHHH--HHHHHHHHHhh
Q 039706 847 NEAFQAGRHSEAVEHYTAALSCT-VESHPFAAICF--CNRAAAYKALR 891 (1166)
Q Consensus 847 ~~~~~~G~yeEAie~y~kALel~-~e~~p~~a~a~--~nlA~ay~~lG 891 (1166)
..+++.|+|++|-..|=+|++-. ....|....|+ .-+|..+++.|
T Consensus 239 KMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 239 KMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred ccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 77889999999999888888643 23345555554 34444444433
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.66 E-value=0.022 Score=42.76 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
.+|+.+|.+|..+|++++|+..|++++++.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3556666666666666666666666666655
No 334
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.7 Score=52.32 Aligned_cols=62 Identities=13% Similarity=0.013 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN--YLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~--~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
|.+..+-+.+|..|...|++++|++.+-..+..+-. +..+...+-.++...|.-+.+...|+
T Consensus 233 Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 233 PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 555555666666666666666666666555555432 23444444455555553333333333
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.58 E-value=0.018 Score=43.22 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~ 909 (1166)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888888888888888888888888888874
No 336
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=1.9 Score=48.35 Aligned_cols=284 Identities=11% Similarity=0.083 Sum_probs=156.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh----CC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAI----DP----DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALel----dP----~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
.+|.-....+++++|+..|.++|.. +. ....+...++.+|...|++..-.+......+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~------------- 74 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREA------------- 74 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH-------------
Confidence 3566777889999999999999865 21 22357789999999999987655554432221
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS------EKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~------~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
...+.+... ...+..+...+ .+....++.-+..++..++..-.. ..+-..++.+|++.|+|.+|+......
T Consensus 75 -m~~ftk~k~-~KiirtLiekf-~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 75 -MEDFTKPKI-TKIIRTLIEKF-PYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred -HHHhcchhH-HHHHHHHHHhc-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 111111110 01111111111 122455666666666666544221 133356788899999999999988877
Q ss_pred HHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHH
Q 039706 759 FHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRE 838 (1166)
Q Consensus 759 Lel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~ 838 (1166)
+.--.....- +..+ ..+.+-..+|+...+..++...+..|.-.... ...+..-.
T Consensus 152 l~ElKk~DDK-----------~~Li--------~vhllESKvyh~irnv~KskaSLTaArt~Ans-------~YCPpqlq 205 (421)
T COG5159 152 LHELKKYDDK-----------INLI--------TVHLLESKVYHEIRNVSKSKASLTAARTLANS-------AYCPPQLQ 205 (421)
T ss_pred HHHHHhhcCc-----------ccee--------ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhc-------cCCCHHHH
Confidence 7543322110 0001 11233567788888888777777654211100 01111112
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC--CchhHHHHHHHHHHHHHhhchhH--HHHHHHHHHH-hCCChHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES--HPFAAICFCNRAAAYKALRHITD--AIADCNLAIA-LDGNYLKA 913 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~--~p~~a~a~~nlA~ay~~lGq~ee--Ai~~lekALe-ldP~~~~A 913 (1166)
+..-+.-|.......+|.-|..+|-+|++--... +......+-.+-.....+++.++ |+-.-..+++ .+...+++
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~a 285 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRA 285 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHH
Confidence 2222334777788889999999999998743211 11111111112222223344333 3322333444 45566778
Q ss_pred HHHHHHHHH--HhhCHHHHHHHHHHHH
Q 039706 914 ISRRATLYE--MIRDYDHAASDFHRLI 938 (1166)
Q Consensus 914 ~~~LA~ay~--~lGdyeeAi~~yekAL 938 (1166)
+...+.+|. .+.+|..|+..|..-+
T Consensus 286 m~avaea~~NRsL~df~~aL~qY~~el 312 (421)
T COG5159 286 MLAVAEAFGNRSLKDFSDALAQYSDEL 312 (421)
T ss_pred HHHHHHHhCCCcHhhHHHHHHHhhHHh
Confidence 888888875 4567777777776654
No 337
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.56 E-value=0.22 Score=56.80 Aligned_cols=133 Identities=14% Similarity=-0.050 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA-LGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~-lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
|........+.+..+.|...|.+|++..+-...+|...|.+-+. .++.+.|...|+.+++..|.+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~------------ 71 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD------------ 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH------------
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH------------
Confidence 44455566666679999999999996666678999999999777 56666699999999998777432
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE---KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~---~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
++..+...+. ..++.+.|..+|++++..-|... .+|......-...|+.+....+.+++.++.|..
T Consensus 72 --------~~~~Y~~~l~--~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 72 --------FWLEYLDFLI--KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp --------HHHHHHHHHH--HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred --------HHHHHHHHHH--HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 2222223332 36889999999999998876554 677788888888999999999999999987763
No 338
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.51 E-value=7.7 Score=46.37 Aligned_cols=52 Identities=8% Similarity=-0.060 Sum_probs=47.4
Q ss_pred HHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 884 AAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 884 A~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
|.-++..|+|.++.-+..-..+++| .+.++..+|.+++...+|++|..++..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3446789999999999999999999 899999999999999999999998865
No 339
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=1.3 Score=53.69 Aligned_cols=106 Identities=10% Similarity=-0.063 Sum_probs=63.3
Q ss_pred HHHHHHHcCChHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 614 RAATRMALGRMRD--ALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 614 rA~ayl~lG~y~e--AI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
.-..+...++++. ..+.+.....+.|..+--.+..|.++...|+.+.|+..++.++. +. +.+
T Consensus 237 ~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~--------------~kQ 300 (546)
T KOG3783|consen 237 FISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IR--------------MKQ 300 (546)
T ss_pred HHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HH--------------HHH
Confidence 3344444444433 33334444557899988888999999999998888888888765 21 111
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKA 739 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA 739 (1166)
... .-.+..+.... -+.+|.+|-..+..+...+..+.-.|..++
T Consensus 301 ~~~-l~~fE~aw~~v---~~~~~~~aad~~~~L~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 301 VKS-LMVFERAWLSV---GQHQYSRAADSFDLLRDESDWSHAFYTYFA 344 (546)
T ss_pred HHH-HHHHHHHHHHH---HHHHHHHHhhHHHHHHhhhhhhHHHHHHHH
Confidence 111 11222222222 245677777777777777766666665555
No 340
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.16 E-value=0.57 Score=55.40 Aligned_cols=177 Identities=13% Similarity=0.008 Sum_probs=113.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHH
Q 039706 723 EALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYF 802 (1166)
Q Consensus 723 kALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~ 802 (1166)
..|..+|...+.+..++.++..+|+++.|.+.+++||-..... +.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~-----------------------------------~~ 75 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA-----------------------------------FH 75 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------------------------------HH
Confidence 3567899999999999999999999999999999998442210 00
Q ss_pred HcCCHHHHHHHHHHHh-cCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHH
Q 039706 803 TLGRLEEAIAALERHE-SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFC 881 (1166)
Q Consensus 803 ~lGd~eeAl~~lekAl-~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~ 881 (1166)
..|.... ...... ...-.....+.....++......+.+.|-|..|+++.+-.+.+++..+|.-..+
T Consensus 76 ---------~~F~~~~~~~~~g~-~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll-- 143 (360)
T PF04910_consen 76 ---------PSFSPFRSNLTSGN-CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLL-- 143 (360)
T ss_pred ---------HHhhhhhcccccCc-cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHH--
Confidence 0000000 000000 000000011112223334446677899999999999999999996655544333
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHhCC-C----hHHHHHHHHHHHHHhhCH---------------HHHHHHHHHHHHHh
Q 039706 882 NRAAAYKALRHITDAIADCNLAIALDG-N----YLKAISRRATLYEMIRDY---------------DHAASDFHRLIALL 941 (1166)
Q Consensus 882 nlA~ay~~lGq~eeAi~~lekALeldP-~----~~~A~~~LA~ay~~lGdy---------------eeAi~~yekALeL~ 941 (1166)
.+-....+.++|+--+..++....... + .+..-+.+|.++..+++- +.|...+++|+..+
T Consensus 144 ~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 144 FIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 334444566777777777776554211 1 234567788888888888 89999999999999
Q ss_pred hhhHH
Q 039706 942 TKQIE 946 (1166)
Q Consensus 942 P~~~e 946 (1166)
|.-..
T Consensus 224 P~vl~ 228 (360)
T PF04910_consen 224 PWVLV 228 (360)
T ss_pred HHHHH
Confidence 98755
No 341
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.15 E-value=4.8 Score=48.03 Aligned_cols=200 Identities=14% Similarity=0.142 Sum_probs=112.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC
Q 039706 652 HLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK-VSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY 730 (1166)
Q Consensus 652 yl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~-~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~ 730 (1166)
..+.++...|.+++.-...++|......+.+.. ...+++.-- -...+.+...+ +..++.+-..+-+
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls-~~~lq~Iv~~DD~~~Tklr~y------------L~lwe~~qs~DiD 374 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKILDPRISVSEKLLLS-PKVLQDIVCEDDESYTKLRDY------------LNLWEEIQSYDID 374 (549)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcC-HHHHHHHHhcchHHHHHHHHH------------HHHHHHHHhhccc
Confidence 357789999999999888899987654443211 111111100 01112222222 2223332222222
Q ss_pred ---hHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCC
Q 039706 731 ---SEKLLEMKAEALFMLRK-YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGR 806 (1166)
Q Consensus 731 ---~~~al~~lA~~y~~lGd-yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd 806 (1166)
-...+..-|.-|.+.|. -++|++.++.+++..+.+... .... . .+-...
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec---------------~n~v-------~-----~fvKq~ 427 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIEC---------------ENIV-------F-----LFVKQA 427 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHH---------------HHHH-------H-----HHHHHH
Confidence 23455667788888887 788999999888876643211 0000 0 011111
Q ss_pred HHHHHH-----HH---HHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH
Q 039706 807 LEEAIA-----AL---ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 807 ~eeAl~-----~l---ekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
|.+|+. .+ +..+...+ ..++.....++.....-|.-++..|+|.++.-+-.=..+++ | .+.
T Consensus 428 Y~qaLs~~~~~rLlkLe~fi~e~g------l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia----P-S~~ 496 (549)
T PF07079_consen 428 YKQALSMHAIPRLLKLEDFITEVG------LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA----P-SPQ 496 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcC------CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----C-cHH
Confidence 222221 11 11111000 01111122233334445677889999999988777777777 6 889
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHH
Q 039706 879 CFCNRAAAYKALRHITDAIADCNL 902 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lek 902 (1166)
+|..+|.|++..++|++|..++..
T Consensus 497 ~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 497 AYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHh
Confidence 999999999999999999999874
No 342
>PRK10941 hypothetical protein; Provisional
Probab=95.11 E-value=0.11 Score=58.72 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
...+.|+-.+|.+.++++.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|+.+|+..++..|++...
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34566778889999999999999999999999999999999999999999999999999999999988664
No 343
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.98 E-value=0.9 Score=44.79 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=64.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039706 739 AEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHE 818 (1166)
Q Consensus 739 A~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl 818 (1166)
|.-.+.-|-|++|...|++++......+.. ....+.-+....+..|+.++..+|+|++++....++
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~e-------------EaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a- 81 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAE-------------EAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA- 81 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TT-------------S---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH-
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChH-------------hhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH-
Confidence 444556688999999999999887665432 111122223333455777888888888887776654
Q ss_pred cCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHH
Q 039706 819 SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIA 898 (1166)
Q Consensus 819 ~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~ 898 (1166)
+.+|++-=+++.+....-..+.+++|.++..+|+.++|+.
T Consensus 82 ----------------------------------------L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~ 121 (144)
T PF12968_consen 82 ----------------------------------------LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALK 121 (144)
T ss_dssp ----------------------------------------HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ----------------------------------------HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHH
Confidence 2222222222211111122344567777788888888888
Q ss_pred HHHHHHHh
Q 039706 899 DCNLAIAL 906 (1166)
Q Consensus 899 ~lekALel 906 (1166)
.|+.+-++
T Consensus 122 ~fr~agEM 129 (144)
T PF12968_consen 122 EFRMAGEM 129 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
No 344
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.96 E-value=1.1 Score=55.05 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=27.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekA 668 (1166)
.++.+.|+|.. +...++.-.+..+ -...|.+-..-|++++|.+.|-.+
T Consensus 713 ~AFVrc~dY~G-ik~vkrl~~i~s~----~~q~aei~~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 713 HAFVRCGDYAG-IKLVKRLRTIHSK----EQQRAEISAFYGEFEEAEKLYLDA 760 (1189)
T ss_pred hhhhhhccccc-hhHHHHhhhhhhH----HHHhHhHhhhhcchhHhhhhhhcc
Confidence 45666677653 4444444333322 234566666678888888877543
No 345
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.83 E-value=8.6 Score=43.75 Aligned_cols=55 Identities=20% Similarity=0.082 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHh----CC------CC----HHHHHHHHHHHHHcCChHHHHH
Q 039706 609 WRLSNRAATRMALG-RMRDALSDCMLAVAI----DP------DF----LRVQVRAANCHLALGEIEDASK 663 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG-~y~eAI~~fekALel----dP------~~----~~A~~~LA~lyl~lGd~eeAl~ 663 (1166)
..+|+.|...+..+ +++.|+..+++|+++ .+ +. ..++..++.+|+..+.++...+
T Consensus 36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 34799999999999 999999999999887 22 11 4567888999998887654433
No 346
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.76 E-value=0.053 Score=41.86 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+|..+|.+|..+|+|++|+.+|+++|.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4667777777777777777777776655433
No 347
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.73 E-value=0.55 Score=54.93 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=81.2
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc-------CCc--hh-----HHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE-------SHP--FA-----AICFCNRAAAYKALRHITDAIADCNLAI 904 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e-------~~p--~~-----a~a~~nlA~ay~~lGq~eeAi~~lekAL 904 (1166)
++..+.-|..++++++|..|+--|..||++-.. ..+ .+ ..+--.+..||+++++.+.|+....+.|
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 344455577888899999999989888886520 111 11 2233468899999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 905 ALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 905 eldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.++|.+..-++..|.++..+.+|.+|...+--|.-+
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887766644
No 348
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.71 E-value=2.8 Score=47.60 Aligned_cols=182 Identities=13% Similarity=-0.036 Sum_probs=119.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML----RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTK 785 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l----GdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~ 785 (1166)
...++..|+..+..+-.. ........++.+|..- .++.+|+..|+.+.... ++.
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--~~~------------------ 110 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--LAE------------------ 110 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--cHH------------------
Confidence 357788888888877652 2235667777777664 46788888888554331 111
Q ss_pred hhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc-----C--C
Q 039706 786 HVSFRLWRCCLIFKSYFT----LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA-----G--R 854 (1166)
Q Consensus 786 ~~~~~~wr~~lLA~ay~~----lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~-----G--~ 854 (1166)
..+.||..|.. ..++.+|..+|+++........ ....+.+|..|..- - +
T Consensus 111 -------a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------------~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 111 -------ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------------ALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred -------HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------------HHHHHHHHHHHHcChhhhcccHH
Confidence 13457777766 4489999999999744322210 22233344444332 1 3
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh-----
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR----- 925 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG----- 925 (1166)
...|+..|.+|-... +..+.+++|.+|.. ..++.+|+.+|.+|.+... ..+.+.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 171 DKKALYLYRKAAELG------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred HHhHHHHHHHHHHhc------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchh
Confidence 347999999987643 66788888888764 3478999999999999876 88888888 666555
Q ss_pred ----------CHHHHHHHHHHHHHHhh
Q 039706 926 ----------DYDHAASDFHRLIALLT 942 (1166)
Q Consensus 926 ----------dyeeAi~~yekALeL~P 942 (1166)
+...|..++..+....+
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 66777777777665433
No 349
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.061 Score=51.28 Aligned_cols=53 Identities=38% Similarity=0.530 Sum_probs=44.2
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 985 DMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 985 dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.--.||||.+..+.+.||+++|+.-+..|||+-+.. -.-..|+||+++|....
T Consensus 57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP------------------------YlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP------------------------YLASKINEAKDLLEGTS 109 (112)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH------------------------HHHHHHHHHHHHHhccc
Confidence 345689999999999999999999999999997642 34568999999997543
No 350
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.049 Score=62.42 Aligned_cols=105 Identities=24% Similarity=0.256 Sum_probs=88.8
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccc-----------c----CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTV-----------E----SHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~-----------e----~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
..+.|+..++.++|..|..-|.+++..-. + .......++.+++.+-+.++.+..|+..+..+++.
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 34558889999999999999998876421 0 11223456778999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 907 DGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 907 dP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
++...+++++++..|..+.++++|+++++.+....|.+..
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 9999999999999999999999999999999998888755
No 351
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.62 E-value=0.12 Score=43.89 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAAN 650 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~ 650 (1166)
.+|.+|..++++|+|.+|..+++.+|+++|++..+......
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 45667778888888888888888888888887776654443
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.57 E-value=0.046 Score=40.47 Aligned_cols=31 Identities=39% Similarity=0.511 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+++.+|.+|..+|++++|+..|+++++.+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666655554
No 353
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.46 E-value=3.8 Score=57.19 Aligned_cols=87 Identities=14% Similarity=0.061 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHh---ccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHH
Q 039706 855 HSEAVEHYTAALS---CTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 855 yeEAie~y~kALe---l~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi 931 (1166)
..+-|-.+++++- .++......+.+|...|.+....|+++.|-.++-.|.+.. -+.++..+|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 4455555555542 2234456778999999999999999999999999998877 5789999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 039706 932 SDFHRLIALLTK 943 (1166)
Q Consensus 932 ~~yekALeL~P~ 943 (1166)
..+++.++++-.
T Consensus 1723 ~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1723 SVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHhhcc
Confidence 999999966433
No 354
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=8.3 Score=43.21 Aligned_cols=132 Identities=11% Similarity=0.057 Sum_probs=103.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG-EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG-d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
++....+-..|+..-..+|.++|.+..+|..+-.|+..++ +..+-+.++..+++-+|.|...+..-
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR------------- 118 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR------------- 118 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH-------------
Confidence 3455667788999999999999999988877777776654 67888899999999888864433221
Q ss_pred HHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 696 SECMQRSAQLLQNKTSNDAE-IALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~e-eALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
..++. ..|++. .-++....+|..+..+..+|..+-.++...+.|+.-+.++.+.|+.+-.|..+|.
T Consensus 119 -------r~ive--~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 119 -------RVIVE--LLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred -------HHHHH--HhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 11111 134555 6688888999999999999999999999999999999999999998877766654
No 355
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.34 E-value=0.16 Score=43.01 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
.+++.+|..+.++|+|.+|..+++.+|+++|++..+......+-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 46788899999999999999999999999999888776554443
No 356
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.34 E-value=0.22 Score=54.49 Aligned_cols=92 Identities=23% Similarity=0.182 Sum_probs=69.5
Q ss_pred HHHcCChHHHHHHHHHHHhccc---cCCchhHHHHHHHHHHHHHhhchh-------HHHHHHHHHHHhCC------ChHH
Q 039706 849 AFQAGRHSEAVEHYTAALSCTV---ESHPFAAICFCNRAAAYKALRHIT-------DAIADCNLAIALDG------NYLK 912 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~---e~~p~~a~a~~nlA~ay~~lGq~e-------eAi~~lekALeldP------~~~~ 912 (1166)
+.....+++|++.|.-||-... ......+.++..+|++|..+++.+ .|+..|.+|++... +...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3445688899999998876442 223355788899999999888844 56666666665432 2356
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.++.+|.++.++|++++|+.+|.+++..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 7888999999999999999999999954
No 357
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.34 E-value=0.55 Score=61.81 Aligned_cols=189 Identities=16% Similarity=0.118 Sum_probs=137.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 039706 735 LEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAAL 814 (1166)
Q Consensus 735 l~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~l 814 (1166)
....+......+.+.+|.+ +-+++.+..+.... -... ....|..++.++..++++++|+..-
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~----------~h~~-------~~~~~~~La~l~~~~~d~~~Ai~~~ 996 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGV----------LHPE-------VASKYRSLAKLSNRLGDNQEAIAQQ 996 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhh----------cchh-------HHHHHHHHHHHHhhhcchHHHHHhc
Confidence 3455566666777777777 55555443211100 0001 1223567999999999999999988
Q ss_pred HHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc----ccCCchhHHHHHHHHHHHHHh
Q 039706 815 ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT----VESHPFAAICFCNRAAAYKAL 890 (1166)
Q Consensus 815 ekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~----~e~~p~~a~a~~nlA~ay~~l 890 (1166)
.++.-... ...-...+.....+.+++...+..++...|+..+.+++.+. .+.+|.-+....+++.++..+
T Consensus 997 ~ka~ii~e------R~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v 1070 (1236)
T KOG1839|consen 997 RKACIISE------RVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV 1070 (1236)
T ss_pred ccceeeec------hhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH
Confidence 87522111 11123345667778888888899999999999999998764 245788888999999999999
Q ss_pred hchhHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 891 RHITDAIADCNLAIALDG--------NYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 891 Gq~eeAi~~lekALeldP--------~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
++++.|+.+++.|+++.- .....+..++.++..++++..|+...+....+++.....
T Consensus 1071 ~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~ 1135 (1236)
T KOG1839|consen 1071 EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGP 1135 (1236)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCC
Confidence 999999999999998752 234567778999999999999999999999888887654
No 358
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.31 E-value=0.07 Score=39.47 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPD 640 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~ 640 (1166)
+++++|.+|..+|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455555555555555555555555555554
No 359
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.18 E-value=20 Score=44.48 Aligned_cols=107 Identities=12% Similarity=-0.008 Sum_probs=86.6
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC-CChHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD-GNYLKAISR 916 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld-P~~~~A~~~ 916 (1166)
+...|.....--...|+++...-.|++++--- ......|.+.+.-....|+..-|-..+.++.++. |..+..++.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c----A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC----ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH----hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 34445555566678899999999999998644 5667889888888888899999988888888875 667777888
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 917 RATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
-+..-...|++..|...|+++.+-.|..++..
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~ 403 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVV 403 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhH
Confidence 88888899999999999999998887766543
No 360
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.16 E-value=0.52 Score=44.47 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHHhhhH
Q 039706 627 ALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV--CVDQKIAVEASDGLQKA 692 (1166)
Q Consensus 627 AI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n--~~a~~~l~Ea~~~L~k~ 692 (1166)
.+..++++++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ...++.+.++...+...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4678899999999999999999999999999999999999999988764 44555555555555443
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.13 E-value=2 Score=49.93 Aligned_cols=52 Identities=23% Similarity=0.139 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 714 AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 714 ~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
.+..+.+|++||+.+|.+..++..+-.+..+..+-++..+.+++++...|..
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~ 98 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGS 98 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Confidence 3456788999999999999999999999999999999999999999988764
No 362
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.07 E-value=1.1 Score=53.07 Aligned_cols=163 Identities=14% Similarity=0.055 Sum_probs=99.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CCchhHHHHHH--HHHHHhhhHH--hHHHHHHHHH
Q 039706 633 LAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG-----SDVCVDQKIAV--EASDGLQKAQ--KVSECMQRSA 703 (1166)
Q Consensus 633 kALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~-----P~n~~a~~~l~--Ea~~~L~k~~--~~~e~~~~a~ 703 (1166)
..|..+|-+..++++++.++..+|+++.|.+.+++||-.- |.......... .....+.... ....++.+..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 3467899999999999999999999999999999998531 11000000000 0000000111 1111122222
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhCCC-hHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCcc
Q 039706 704 QLLQNKTSNDAEIALGVIDEALFISSY-SEK-LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSS 781 (1166)
Q Consensus 704 ~~l~~~~~gd~eeALe~lekALel~P~-~~~-al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~ 781 (1166)
.. ..+.|-+..|+++.+-++.++|. ++- +++.+=...++.++|+=-+..++........+.
T Consensus 111 ~~--L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~--------------- 173 (360)
T PF04910_consen 111 QS--LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNW--------------- 173 (360)
T ss_pred HH--HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhh---------------
Confidence 22 34689999999999999999998 664 455555556677888888888876654211110
Q ss_pred chhhhhhhhhHHHHHHHHHHHHcCCH---------------HHHHHHHHHH
Q 039706 782 ESTKHVSFRLWRCCLIFKSYFTLGRL---------------EEAIAALERH 817 (1166)
Q Consensus 782 ~~~~~~~~~~wr~~lLA~ay~~lGd~---------------eeAl~~lekA 817 (1166)
.... ....+-++.+++.+++- +.|...+++|
T Consensus 174 -~~~l----Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~A 219 (360)
T PF04910_consen 174 -LSLL----PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKA 219 (360)
T ss_pred -hhhC----ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHH
Confidence 0000 01124577788888887 7888888876
No 363
>PRK10941 hypothetical protein; Provisional
Probab=94.06 E-value=0.34 Score=54.82 Aligned_cols=68 Identities=15% Similarity=-0.001 Sum_probs=63.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
+.|+=.+|+..++++.|+.+.+.++.++|+.+.-+..+|.+|.++|.+..|+..++..++..|+.+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 57788899999999999999999999999999999999999999999999999999999999986543
No 364
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.00 E-value=0.12 Score=57.94 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=70.5
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
.+......+....+.|+.++|..+|+.|+.++ |.++.++...|.....-++.-+|-.+|-+||.+.|.+.+|+.++
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlala----P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALA----PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcC----CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 34444556677789999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred HHHH
Q 039706 918 ATLY 921 (1166)
Q Consensus 918 A~ay 921 (1166)
+...
T Consensus 191 ~RT~ 194 (472)
T KOG3824|consen 191 ARTT 194 (472)
T ss_pred hccc
Confidence 7654
No 365
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.97 E-value=18 Score=43.29 Aligned_cols=187 Identities=12% Similarity=0.027 Sum_probs=109.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHH
Q 039706 721 IDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKS 800 (1166)
Q Consensus 721 lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~a 800 (1166)
+++++..-|..+++|+.....+...++-+.|+...++++...|... ..++..
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~----------------------------~~lse~ 342 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLT----------------------------MFLSEY 342 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchh----------------------------eeHHHH
Confidence 4445555566666777777777777777777777777666555311 224555
Q ss_pred HHHcCCHHHHHHHHHHHhc----------------CCCCchhhhhhhh--ccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 801 YFTLGRLEEAIAALERHES----------------GNGGKMLESLIPL--AGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 801 y~~lGd~eeAl~~lekAl~----------------~~~~k~le~a~~L--~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
|-...+-+....+|+++.+ .+.+. +...++ ....+...++.-.-+.-.+..-.+.|...|
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~--e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F 420 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNF--EYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLF 420 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCc--cccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555555555555322 00000 000000 000011111121233444555677788888
Q ss_pred HHHHhccccCCchhHHHHHHHH-HHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 863 TAALSCTVESHPFAAICFCNRA-AAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA-~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
.++-+.. -....+|..-| .-|...+++.-|-..|+..+...|+.+......-.-+..+++-..|...|+.+++..
T Consensus 421 ~k~rk~~----~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~ 496 (660)
T COG5107 421 IKLRKEG----IVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERL 496 (660)
T ss_pred HHHhccC----CCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH
Confidence 8886543 12222332222 236678999999999999999999887666666667788999999999999888653
No 366
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.95 E-value=0.48 Score=53.39 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=61.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
+.|.-....|+.++|...|+.|+.++|++++++..+|.....-.+.-+|-++|-+||.++|.+..+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 456677889999999999999999999999999999999999999999999999999999997654
No 367
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=3.8 Score=45.73 Aligned_cols=170 Identities=11% Similarity=0.013 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR-KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG-dyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
...-..|+.+.+.+|.++|.+..+|..+-.++..++ +..+-++++.++++-.|+|-..
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQv--------------------- 114 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQV--------------------- 114 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhH---------------------
Confidence 345577888999999999999888888777777664 5677888999999888887543
Q ss_pred hhHHHHHHHHHHHHcCCHH-HHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhc
Q 039706 790 RLWRCCLIFKSYFTLGRLE-EAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSC 868 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~e-eAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel 868 (1166)
|.+ .-.+...+|+.. .-+...+.++..+.. .-.++.+. -.++..-+.|+.-+.+..+.|+.
T Consensus 115 --WHH--Rr~ive~l~d~s~rELef~~~~l~~DaK------------NYHaWshR--qW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 115 --WHH--RRVIVELLGDPSFRELEFTKLMLDDDAK------------NYHAWSHR--QWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred --HHH--HHHHHHHhcCcccchHHHHHHHHhcccc------------chhhhHHH--HHHHHHHhhHHHHHHHHHHHHHH
Confidence 322 122333444544 444555544332221 12233333 45556666788888888888887
Q ss_pred cccCCchhHHHHHHHHHHHHH------hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 039706 869 TVESHPFAAICFCNRAAAYKA------LRHITDAIADCNLAIALDGNYLKAISRRATLYEM 923 (1166)
Q Consensus 869 ~~e~~p~~a~a~~nlA~ay~~------lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~ 923 (1166)
+ ..+-.+|..+--+... .-..+.-+.+..+.|.+.|++..+|..|.-++..
T Consensus 177 D----i~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 177 D----IRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred h----hhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 6 3333444433211111 1234455677778888889988888888777664
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.57 E-value=0.11 Score=36.58 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPD 640 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~ 640 (1166)
+|+++|.+|+.++++++|+..|+++++++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3556666666666666666666666666654
No 369
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.52 E-value=5 Score=49.38 Aligned_cols=79 Identities=10% Similarity=-0.014 Sum_probs=42.9
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
.+..+.+...+.-|.+.|.+.-.+. .+-..+...++|.+|....++--++- ...|+..|+-+...
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD~k------------siVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGDLK------------SLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhccHH------------HHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhh
Confidence 3444445555555666665542211 12234556677777766655432222 23556666666667
Q ss_pred hCHHHHHHHHHHHH
Q 039706 925 RDYDHAASDFHRLI 938 (1166)
Q Consensus 925 GdyeeAi~~yekAL 938 (1166)
.++++|.+.|.+|=
T Consensus 818 DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAG 831 (1081)
T ss_pred hhHHHHHHHHHHhc
Confidence 77777777666553
No 370
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.42 E-value=1.8 Score=45.97 Aligned_cols=100 Identities=14% Similarity=0.024 Sum_probs=75.4
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC--ChHH----
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG--NYLK---- 912 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP--~~~~---- 912 (1166)
...+..+|..|.+.|++++|+++|.++.+.. .........+.++-.+....+++..+..++.+|-.+-. .+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4567778999999999999999999988754 22234456777888888999999999999999877642 2222
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIA 939 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALe 939 (1166)
.....|..++..++|.+|...|-.++.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 233456777778889888888876653
No 371
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.37 E-value=0.13 Score=39.69 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVA 636 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALe 636 (1166)
|.++|.+|..+|+|++|+.+|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
No 372
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.29 E-value=3.4 Score=48.14 Aligned_cols=166 Identities=11% Similarity=-0.000 Sum_probs=101.1
Q ss_pred HHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 039706 582 VDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDA 661 (1166)
Q Consensus 582 ~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeA 661 (1166)
.++.+.+..+|++..+.+.-+ +..+..........-....-.+..+..|++||+.+|++...++.+-.++....+.++.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li-~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELI-EFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHH-HHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 466777888888777665421 1111110000000111122246678899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHh-h--hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC----------
Q 039706 662 SKYFRMCLQSGSDVCVDQKIAVEASDGL-Q--KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS---------- 728 (1166)
Q Consensus 662 l~~fekALel~P~n~~a~~~l~Ea~~~L-~--k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~---------- 728 (1166)
.+-+++++..+|.+..-|..+......- . .+..+...+. +++..+.....-.
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~---------------~~l~~L~~~~~~~~~~~~~~~~~ 149 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE---------------KCLRALSRRRSGRMTSHPDLPEL 149 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH---------------HHHHHHHHhhccccccccchhhH
Confidence 9999999999998765554433322210 0 1112222222 2222222221111
Q ss_pred -CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Q 039706 729 -SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAE 763 (1166)
Q Consensus 729 -P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p 763 (1166)
.....++..+...+...|-.+.|+..++-.++++=
T Consensus 150 e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 150 EEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 11235566777888889999999999999998854
No 373
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.09 E-value=0.14 Score=35.92 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCC
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP 908 (1166)
+|.++|.++..++++++|+..+.++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555544
No 374
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=0.11 Score=52.95 Aligned_cols=73 Identities=29% Similarity=0.488 Sum_probs=53.0
Q ss_pred ccchhhhcccC--CCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCC
Q 039706 983 PLDMYLILGVE--SSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDP 1060 (1166)
Q Consensus 983 ~~dyY~iLGl~--~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~ 1060 (1166)
+.+||.+.|.. ......-....|..-..+.|||+.....+ .....|.+.-..|++||.+|.||
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~---------------~~~d~a~eqSa~lnkAY~TLk~p 71 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFA---------------GDTDQASEQSAELNKAYDTLKDP 71 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCccccccccc---------------ccchhHHHHHHHHHHHHHHHHhH
Confidence 35789988744 34445555557788888999999653211 11246778899999999999999
Q ss_pred chhcccchhh
Q 039706 1061 SKRSRYDLEE 1070 (1166)
Q Consensus 1061 ~kR~~YD~~~ 1070 (1166)
-+|++|=..+
T Consensus 72 L~RA~Yilkl 81 (168)
T KOG3192|consen 72 LARARYLLKL 81 (168)
T ss_pred HHHHHHHHHH
Confidence 9999996543
No 375
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.57 E-value=0.15 Score=55.29 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=56.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~ 676 (1166)
......++.+.|.+.|.+|+.+-|.+...|+++|....+.|+++.|.+.|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456678999999999999999999999999999999999999999999999999999853
No 376
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=0.79 Score=56.08 Aligned_cols=102 Identities=10% Similarity=0.038 Sum_probs=86.0
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
+.+.|.-+|+.++|..+++.|...+...+ ......+....+++.||+.+.+.+.|+++++.|-+.+|..+-..+..-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 44567888999999999999999987543 1223447788999999999999999999999999999999988888888
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 920 LYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 920 ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+....+.-++|+...........+
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhhhcc
Confidence 888899999999998887765444
No 377
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.51 E-value=1.1 Score=43.91 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=69.2
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc-----------hhHHHHHHHHHHHhCCChHHH
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH-----------ITDAIADCNLAIALDGNYLKA 913 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq-----------~eeAi~~lekALeldP~~~~A 913 (1166)
++..++..|++-+|++..+..+....+. ...+.++...|.++..+.. .-.|++.+.++..+.|..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~-~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED-ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC-CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 4677899999999999999999876322 2223566667777766543 446899999999999998777
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
++.+|.-+-....|++++.--+++|.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 777777666666666666666666543
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.47 E-value=1.2 Score=54.05 Aligned_cols=130 Identities=16% Similarity=0.162 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 792 WRCCLIFKSYFT-LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 792 wr~~lLA~ay~~-lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
|.+..++..|.+ .|+..+|+.++..++...+. ...-..++.+|.++++.|...+|--.+..|+.-.
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~------------h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA- 279 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSR------------HNKDIALLSLATVLHRAGFSADAAVILHAALDDA- 279 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCc------------ccccchhhhHHHHHHHcccccchhheeehhccCC-
Confidence 556667777655 69999999999997543222 2223345678999999999999999999888765
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 871 ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 871 e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
+....-++.++.++..++.+...+..|..+.+.+|....+.-.++.+-.-+.+..++++-..+.
T Consensus 280 ---~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~ 343 (886)
T KOG4507|consen 280 ---DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRS 343 (886)
T ss_pred ---ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556668999999999999999999999999999987666555544444344444444433333
No 379
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.45 E-value=11 Score=42.83 Aligned_cols=136 Identities=10% Similarity=-0.056 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCch-hHH
Q 039706 609 WRLSNRAATRMAL----GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA----LGEIEDASKYFRMCLQSGSDVC-VDQ 679 (1166)
Q Consensus 609 ~ay~nrA~ayl~l----G~y~eAI~~fekALeldP~~~~A~~~LA~lyl~----lGd~eeAl~~fekALel~P~n~-~a~ 679 (1166)
.+.+.++..|..- .++.+|+..|..+ .+..++.+.+.||.+|.. ..++.+|..+|+++.+..-... ...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 4566677777654 3688899999944 456788899999999987 4599999999999998754321 000
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH----ccCHHHHHHHH
Q 039706 680 KIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFM----LRKYEEVIQLC 755 (1166)
Q Consensus 680 ~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~----lGdyeeAi~~l 755 (1166)
..+... +.. .. ......-+...|+..|.++-... ++.+...+|.+|.. ..++.+|+..|
T Consensus 152 ~~l~~~-------------~~~-g~-~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy 214 (292)
T COG0790 152 YRLGLA-------------YLS-GL-QALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWY 214 (292)
T ss_pred HHHHHH-------------HHc-Ch-hhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHH
Confidence 000000 000 00 00001123357888888887765 67788888888865 45899999999
Q ss_pred HHHHHhcc
Q 039706 756 EQTFHFAE 763 (1166)
Q Consensus 756 ekALel~p 763 (1166)
.++.+...
T Consensus 215 ~~Aa~~g~ 222 (292)
T COG0790 215 KKAAEQGD 222 (292)
T ss_pred HHHHHCCC
Confidence 99987643
No 380
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.22 E-value=52 Score=43.77 Aligned_cols=55 Identities=18% Similarity=0.010 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 623 RMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 623 ~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
.+.+|+..|++. .-.|.-+--|+..|.+|.++|+|++-+++|..|++..|..+.-
T Consensus 534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 577888888774 4467777889999999999999999999999999988876543
No 381
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.19 E-value=5.7 Score=45.50 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC---ccccCcccccCccchhhhhh
Q 039706 712 NDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP---LDANGQSMELDSSESTKHVS 788 (1166)
Q Consensus 712 gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a---~~~~g~~l~ld~~~~~~~~~ 788 (1166)
.+..+-|.....||+++|.++.++..+|+-- .--..+|..+++++|+........ ....+... ......+..
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~---da~~rRDtn 272 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH---EAQLRRDTN 272 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch---hhhhhcccc
Confidence 4455667777789999999999998887632 233566777777777653321110 00000000 000111112
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039706 789 FRLWRCCLIFKSYFTLGRLEEAIAALERHES 819 (1166)
Q Consensus 789 ~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~ 819 (1166)
...+.-..++.+..++|+..+|++.++....
T Consensus 273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 2233346789999999999999999988644
No 382
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.18 E-value=0.33 Score=60.87 Aligned_cols=108 Identities=27% Similarity=0.355 Sum_probs=96.0
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh--hchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL--RHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l--Gq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
+......|+.+++.++|.+|.-.|..++.+-|..+...+.+..+++.||+.+ ++|..++..++.|+...|....+++.
T Consensus 53 a~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~ 132 (748)
T KOG4151|consen 53 ALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLK 132 (748)
T ss_pred HHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhh
Confidence 4445567999999999999999999999998877888899999999998865 68999999999999999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 917 RATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
++.+|..++.++-|++++.-.....|.+.+
T Consensus 133 r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 133 RARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 999999999999999998877777777744
No 383
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.76 E-value=0.39 Score=57.44 Aligned_cols=78 Identities=24% Similarity=0.233 Sum_probs=64.3
Q ss_pred HHHHHHHHhchH--HHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 597 AETIAAQEACEK--WRLSNRAATRMAL---GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 597 a~~~aAIe~~e~--~ay~nrA~ayl~l---G~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
..+..|+...+. ..|.|||.++++. |+.-.|+.+|..|++++|...+||++|++++..++++.+|+.+...+...
T Consensus 395 ~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 395 SHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred HHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 344455544433 4478899999885 57788999999999999999999999999999999999999998877777
Q ss_pred CCC
Q 039706 672 GSD 674 (1166)
Q Consensus 672 ~P~ 674 (1166)
.|.
T Consensus 475 ~Pt 477 (758)
T KOG1310|consen 475 FPT 477 (758)
T ss_pred Cch
Confidence 774
No 384
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.69 E-value=27 Score=43.47 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPD------FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~------~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
..+.|.|.-+++..+|..|++.|...+..-|. +++....++.||+.+.+.+.|+++++.|-+.+|.++......
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 44678899999999999999999999987664 467888999999999999999999999999999876544443
No 385
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.59 E-value=3.3 Score=54.97 Aligned_cols=173 Identities=12% Similarity=0.043 Sum_probs=117.2
Q ss_pred CCCHHHHHH------HHHHH-HHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccch
Q 039706 711 SNDAEIALG------VIDEA-LFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSES 783 (1166)
Q Consensus 711 ~gd~eeALe------~lekA-Lel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~ 783 (1166)
.+.+.+|.+ .+... -.+.|.....|..++.++..++++++|+....++.-+..... ..+....
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~----------g~ds~~t 1014 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL----------GKDSPNT 1014 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc----------cCCCHHH
Confidence 556666666 44433 234688889999999999999999999999888765543321 1222222
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHH
Q 039706 784 TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYT 863 (1166)
Q Consensus 784 ~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~ 863 (1166)
...+..++...+..++...|+..+.+++....- ......+.-+....+++.++...++++.|+.+.+
T Consensus 1015 -------~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L------s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le 1081 (1236)
T KOG1839|consen 1015 -------KLAYGNLALYEFAVKNLSGALKSLNRALKLKLL------SSGEDHPPTALSFINLELLLLGVEEADTALRYLE 1081 (1236)
T ss_pred -------HHHhhHHHHHHHhccCccchhhhHHHHHHhhcc------ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 233566788888888999999998886442211 1111234445555666777888899999999999
Q ss_pred HHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 864 AALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 864 kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
.|+++.. ...-..+.++..+|.++..++++..|+...+....+
T Consensus 1082 ~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1082 SALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 9998653 122345667777777777777777777777666554
No 386
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.44 E-value=9 Score=42.89 Aligned_cols=125 Identities=13% Similarity=0.001 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc----CCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHES----GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~----~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
..+|.+|+..++|.+-.+.+.+.-. .++...+. .....++.|-..-..|..+.+-..-..+|+++|.+..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k------KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKS 222 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK------KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKS 222 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh------ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhc
Confidence 4588999999988877777666322 22222221 2222234444445667777777777788999987652
Q ss_pred c-CCchh-HHHHHHHHHHHHHhhchhHHHHHHHHHHHhC-----CChHH--HHHHHHHHHHHhh
Q 039706 871 E-SHPFA-AICFCNRAAAYKALRHITDAIADCNLAIALD-----GNYLK--AISRRATLYEMIR 925 (1166)
Q Consensus 871 e-~~p~~-a~a~~nlA~ay~~lGq~eeAi~~lekALeld-----P~~~~--A~~~LA~ay~~lG 925 (1166)
. .+|.- ..+.-.=|..+++.|+|++|..+|=.|.+.. |.... -|+-+|..+++.|
T Consensus 223 AIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 223 AIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 1 12222 1222223556788899999999999988753 33322 3444566665554
No 387
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.42 E-value=1.2 Score=45.05 Aligned_cols=80 Identities=10% Similarity=0.075 Sum_probs=60.7
Q ss_pred HHHhhhhHHHHHcC---ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 840 LCRKSAGNEAFQAG---RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G---~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
...+++++++.... +..+.|.+++..+.- ......-.+.|.+|..++++++|+.|+.+++..|+..|++..+...
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34455566666554 456788899999862 2334556788889999999999999999999999999999888765
Q ss_pred HHHHH
Q 039706 917 RATLY 921 (1166)
Q Consensus 917 LA~ay 921 (1166)
.-.+.
T Consensus 111 k~~ie 115 (149)
T KOG3364|consen 111 KETIE 115 (149)
T ss_pred HHHHH
Confidence 54444
No 388
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.35 E-value=2.3 Score=46.58 Aligned_cols=108 Identities=15% Similarity=-0.034 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCC-------hHHHHHHHHHHHhccc--cCCch
Q 039706 805 GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGR-------HSEAVEHYTAALSCTV--ESHPF 875 (1166)
Q Consensus 805 Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~-------yeEAie~y~kALel~~--e~~p~ 875 (1166)
-.+++|++.|.-|+... .+.-......+..++.+|++|...++ +..|++.|.+|++... ...-.
T Consensus 91 Rt~~~ai~~YkLAll~~-------~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCA-------QIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred CCHHHHHHHHHHHHHHH-------HHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 35667777776653210 00011122345556666777777776 4556667777765442 12234
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH-HHHHHHHH
Q 039706 876 AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL-KAISRRAT 919 (1166)
Q Consensus 876 ~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~-~A~~~LA~ 919 (1166)
...+++.+|.++.++|++++|+.+|.+++....... ..+..+|.
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 567888999999999999999999999997643322 34444443
No 389
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.32 E-value=33 Score=39.62 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=43.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
..-+...+..+..+-|.....||+++|..+.+|..+|.--.. -..+|...|++||+.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~--Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEAT--TIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhh--hHHHHHHHHHHHHHH
Confidence 344445566777888999999999999999999988865433 367888888888864
No 390
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.26 E-value=17 Score=48.21 Aligned_cols=130 Identities=14% Similarity=0.065 Sum_probs=87.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----C---ChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLAL----G---EIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~l----G---d~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
-.+++....|+.|+..|++...--|.- .+|.+++|..++.+ | .+++|+..|++... .|..
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------- 551 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGA--------- 551 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCC---------
Confidence 456777888999999999999888865 46889999888754 2 36666666665432 2221
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc-----CHHHHHHHHHHHH
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR-----KYEEVIQLCEQTF 759 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG-----dyeeAi~~lekAL 759 (1166)
-+..++.++.+...++|++-+..|.-|++..|..+.+-..+-.+-+++. .-..|....--++
T Consensus 552 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (932)
T PRK13184 552 -------------PLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLAL 618 (932)
T ss_pred -------------chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333455555667899999999999999999888755544444333332 2334555555666
Q ss_pred HhccCCCC
Q 039706 760 HFAEKNSP 767 (1166)
Q Consensus 760 el~p~n~~ 767 (1166)
...|....
T Consensus 619 ~~~~~~~~ 626 (932)
T PRK13184 619 WIAPEKIS 626 (932)
T ss_pred HhCccccc
Confidence 66666543
No 391
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.10 E-value=13 Score=39.38 Aligned_cols=117 Identities=13% Similarity=0.035 Sum_probs=81.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
....+.+....|+...|+..|..+-...+.+ .+..-.+.+..+..+...|-|++-....+.. ..+.+
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt~~P----------~~~rd~ARlraa~lLvD~gsy~dV~srvepL---a~d~n 163 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADTSIP----------QIGRDLARLRAAYLLVDNGSYDDVSSRVEPL---AGDGN 163 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccCCCc----------chhhHHHHHHHHHHHhccccHHHHHHHhhhc---cCCCC
Confidence 3557788889999999999998864433322 1111122333577788889888766555443 22455
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
|....+.-.||.+-++.|++.+|...|..... +..-+....+++.+.+.+
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 77777888889999999999999999988766 666677777787776543
No 392
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.75 E-value=2.7 Score=41.12 Aligned_cols=102 Identities=15% Similarity=0.067 Sum_probs=72.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHh
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDPDFLRV---QVRAANCHLALGEIEDASKYFRMCLQS-GSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP~~~~A---~~~LA~lyl~lGd~eeAl~~fekALel-~P~n~~a~~~l~Ea~~~L 689 (1166)
+|..++..|++-+|++..+..+...++...+ +...|.++..+ +... +|+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l------------A~~ten~d~-------------- 55 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL------------AKKTENPDV-------------- 55 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH------------HHhccCchH--------------
Confidence 6778888888888888888888888776543 33444444332 2222 3320
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
.. --.-.|++.+.++..+.|..+..++.+|.-+-...-|++++.-++++|.+
T Consensus 56 -----------k~---------~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 56 -----------KF---------RYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -----------HH---------HHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 00 01224788999999999999999999988887788889999988888865
No 393
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.72 E-value=1.3 Score=41.68 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=48.7
Q ss_pred HHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 858 AVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY--LKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 858 Aie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~--~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
.+..++++++.+ |.+..+.+.+|.++...|++++|++.+-.++..++++ ..+...+-.++..+|.-+.-+..|+
T Consensus 7 ~~~al~~~~a~~----P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAAN----PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHS----TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 345666677666 7777788888888888888888888888888777665 4555666666666666554555554
Q ss_pred HHH
Q 039706 936 RLI 938 (1166)
Q Consensus 936 kAL 938 (1166)
+-+
T Consensus 83 RkL 85 (90)
T PF14561_consen 83 RKL 85 (90)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 394
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.60 E-value=2.6 Score=50.12 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=89.2
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
..|+.-.|-..+..+|...|..+....+.+.+...+|.|+.|.+.+..+-.+-..-..+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~--------------------- 359 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST--------------------- 359 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH---------------------
Confidence 47899899999999999999999999999999999999999998876554432211100
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
...+-+.++.+|++++|+...+-.+. ..+...+...-.+.....+|-+++|.-++++.+.++
T Consensus 360 ----~~~~~r~~~~l~r~~~a~s~a~~~l~--------------~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 360 ----LRCRLRSLHGLARWREALSTAEMMLS--------------NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred ----HHHHHHhhhchhhHHHHHHHHHHHhc--------------cccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 12244667889999999988876532 222223333334555667788999999999999887
Q ss_pred c
Q 039706 870 V 870 (1166)
Q Consensus 870 ~ 870 (1166)
+
T Consensus 422 ~ 422 (831)
T PRK15180 422 P 422 (831)
T ss_pred C
Confidence 4
No 395
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.49 E-value=0.24 Score=53.92 Aligned_cols=59 Identities=20% Similarity=0.155 Sum_probs=36.1
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
...+.++.+.|.+.|.+|+.+. |..+..|+.+|....+.|+++.|.+.|++.|+++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~la----p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA----PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC----chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4445566666666666666655 5566666666666666666666666666666666554
No 396
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.05 E-value=13 Score=41.41 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 644 VQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 644 A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
-++.+|.++.+.++|++++.++++++..+++
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 3567888888899999999999998888765
No 397
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.84 E-value=3.2 Score=43.98 Aligned_cols=61 Identities=33% Similarity=0.466 Sum_probs=51.3
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVL 1057 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vL 1057 (1166)
.+.|.+|++.......+|+++|+++...+|||+.... ....+..+.+++.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~-------------~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAK-------------GLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHh-------------cCCHHHHHHHHHHHHHHHHHHHhc
Confidence 5889999999999999999999999999999997521 123455678999999999999743
No 398
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.81 E-value=7.5 Score=44.32 Aligned_cols=85 Identities=21% Similarity=0.119 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
+|..-+...+++++ .....++..++..+...++++.++..+++.+.++|.+-.+|..+-.+|+..|+...|+..
T Consensus 136 ~f~~WV~~~R~~l~------e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~ 209 (280)
T COG3629 136 RFDEWVLEQRRALE------ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRA 209 (280)
T ss_pred hHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHH
Confidence 36666666667765 456778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 039706 934 FHRLIALLTKQ 944 (1166)
Q Consensus 934 yekALeL~P~~ 944 (1166)
|+++-++..+.
T Consensus 210 y~~l~~~~~ed 220 (280)
T COG3629 210 YRQLKKTLAEE 220 (280)
T ss_pred HHHHHHHhhhh
Confidence 99998874443
No 399
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.59 E-value=18 Score=47.23 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVA----IDPDFLRVQVRAANCHLALGEI--EDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALe----ldP~~~~A~~~LA~lyl~lGd~--eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
|..++..|...|++++|++.+..... .++.....+-..-..+..++.- +-..++-.-.+.-+|..... ++
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~--If-- 582 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQ--IF-- 582 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhhee--ee--
Confidence 56677777777777777777777766 3444445555544455555544 55555555555555542110 00
Q ss_pred HHHHhhhHHh-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Q 039706 685 ASDGLQKAQK-VSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY-SEKLLEMKAEALF 743 (1166)
Q Consensus 685 a~~~L~k~~~-~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~-~~~al~~lA~~y~ 743 (1166)
..... ....+ .....+.+.......-++.+++.++...-. ...++..++..|.
T Consensus 583 -----t~~~~~~~~si-s~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 583 -----TSEDKQEAESI-SRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred -----eccChhhhccC-CHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 00000 00000 011222233456677788888888876644 3444444444444
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.17 E-value=2.5 Score=39.89 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=44.1
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCc-----hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHP-----FAAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p-----~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
...+.++|.+|++.+.+.++....... ....++.++|.++...|++++|+..+++|+.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 346789999999999888876532211 235567778888888888888888888888774
No 401
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.06 E-value=15 Score=38.94 Aligned_cols=131 Identities=11% Similarity=-0.054 Sum_probs=90.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDF--LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~--~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
|.-|.-+...+..++|+..|..+-+-.-.. .-+.++.|.++.+.|+...|+.+|..+-.-.|- +..
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~----------- 129 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQI----------- 129 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cch-----------
Confidence 444556667789999999998876654433 457789999999999999999999987764432 110
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEAL-FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFH 760 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekAL-el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALe 760 (1166)
..-+.++...+.....|-|++....++.+- ..+|.-..+...+|.+-++.|++..|...|.++..
T Consensus 130 ------~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 130 ------GRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ------hhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 001111222222234677777666555432 23455667888999999999999999999998875
No 402
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.74 E-value=6.9 Score=47.64 Aligned_cols=154 Identities=18% Similarity=0.100 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYS-EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~-~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
.+++++++..+... ++-|.- .......+..+..+|-++.|++..+.--
T Consensus 274 ~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------------------------ 322 (443)
T PF04053_consen 274 RGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------------------------ 322 (443)
T ss_dssp TT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------------------------
T ss_pred cCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------------------------
Confidence 46677766665421 112222 3445666777777888888876643110
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
..-.+...+|+++.|++..++. .....|..+|..++..|+++-|.++|.++=.
T Consensus 323 ------~rFeLAl~lg~L~~A~~~a~~~-------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-- 375 (443)
T PF04053_consen 323 ------HRFELALQLGNLDIALEIAKEL-------------------DDPEKWKQLGDEALRQGNIELAEECYQKAKD-- 375 (443)
T ss_dssp ------HHHHHHHHCT-HHHHHHHCCCC-------------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT---
T ss_pred ------HHhHHHHhcCCHHHHHHHHHhc-------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--
Confidence 1223456788888888766442 1344678889999999999999888888743
Q ss_pred ccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 870 VESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 870 ~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
+..+..+|...|+.+.-.+..+.|....- +...-.+++.+|+.++.+..+.++
T Consensus 376 ----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 ----------FSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ----------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 23344566667776554444444443322 122334456677777777766554
No 403
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.66 E-value=14 Score=45.45 Aligned_cols=134 Identities=15% Similarity=0.056 Sum_probs=77.3
Q ss_pred CChHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCchhHHHHHHH
Q 039706 622 GRMRDALSDCMLAVAI------------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS-----GSDVCVDQKIAVE 684 (1166)
Q Consensus 622 G~y~eAI~~fekALel------------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel-----~P~n~~a~~~l~E 684 (1166)
.-|++|...|.-|+.. .|-+...++++|.+...+|+.+-|....+++|-. .|..........-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3455666666666543 4777899999999999999999999988888751 2221100000000
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH-HHccCHHHHHHHHHHH
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY-SEKLLEMKAEAL-FMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~-~~~al~~lA~~y-~~lGdyeeAi~~lekA 758 (1166)
-+... ......-++.+... .....|-|..|+++..-++.++|. ++.....+..+| ++..+|+=-|+.++..
T Consensus 332 ~y~~~-eNR~FyL~l~r~m~--~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 332 PYIYP-ENRQFYLALFRYMQ--SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cccch-hhHHHHHHHHHHHH--HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00000 00001111111111 123589999999999999999997 665544444444 3445666555555544
No 404
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.54 E-value=46 Score=37.65 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHHHccCHHHHHHHHH
Q 039706 730 YSEKLLEMKAEALFMLRKYEEVIQLCE 756 (1166)
Q Consensus 730 ~~~~al~~lA~~y~~lGdyeeAi~~le 756 (1166)
.++.++..+|..|++.+++.+|..++-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 467899999999999999999887763
No 405
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.15 E-value=46 Score=39.57 Aligned_cols=139 Identities=10% Similarity=-0.038 Sum_probs=92.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc--chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCc
Q 039706 799 KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG--TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHP 874 (1166)
Q Consensus 799 ~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~--~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p 874 (1166)
..++...++.+|.+.-+..+..- +..-.. +.-.+..|+.+...|-..++...-...+...+.... ....
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i-------~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e 206 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASI-------SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEE 206 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH-------HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcch
Confidence 34455688999988877642210 000000 111233445556677777886666666665555432 1223
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHH----hCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIA----LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALe----ldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
..+.+.+.+-.+|+.-+.|+.|-....++.- .+...+..++.+|.+...+.+|..|.+++-+|+...|.+
T Consensus 207 ~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 207 GQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 4466677788899999999999988887651 122456678889999999999999999999999998874
No 406
>PRK11619 lytic murein transglycosylase; Provisional
Probab=88.03 E-value=92 Score=40.01 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=32.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 621 LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 621 lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
.+++..-+..+ ...|......+.++.++...|+.++|.....++-..
T Consensus 112 ~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~ 158 (644)
T PRK11619 112 REDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLT 158 (644)
T ss_pred ccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 44555544422 224788888888899999999988887777766543
No 407
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.84 E-value=0.84 Score=35.35 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
++.++|.+|..+|++++|+.++++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 34445555555555555555555555443
No 408
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.46 E-value=47 Score=47.31 Aligned_cols=118 Identities=9% Similarity=-0.044 Sum_probs=70.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCC--CC-HHH-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDP--DF-LRV-QVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP--~~-~~A-~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
+|.+-+..+.|..|+.++++- ...+ .+ ..+ +..+=.+|...++++.-.-.+.. ...+|.
T Consensus 1389 La~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s--------------- 1451 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS--------------- 1451 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc---------------
Confidence 344555566666666666663 1111 11 122 23333366666666655544432 111222
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
...+.+.....|+|..|..+|++++..+|+....+...-...+..+.+...+...+-..
T Consensus 1452 -----------l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1452 -----------LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred -----------HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 11223334457999999999999999999987777777777778888888877655443
No 409
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.28 E-value=23 Score=43.73 Aligned_cols=185 Identities=13% Similarity=0.000 Sum_probs=104.9
Q ss_pred ccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----
Q 039706 745 LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES----- 819 (1166)
Q Consensus 745 lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~----- 819 (1166)
..-|++|...|.-++...+.+.... ++ ... .+.+..+..++.++..+|+.+.|...+++++-
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~-----lL-~ss-------PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a 317 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLI-----LL-ISS-------PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRA 317 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceee-----ee-ccC-------CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 4568888888888877655443220 11 111 12233356788999999999998888888643
Q ss_pred --CCCCchhhhhh---hhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchh
Q 039706 820 --GNGGKMLESLI---PLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHIT 894 (1166)
Q Consensus 820 --~~~~k~le~a~---~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~e 894 (1166)
..-......|. ....+.....++...-..+.+.|-|..|.++.+-.+++++..+|.-.. +.+-...++..+|+
T Consensus 318 ~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l--~~ID~~ALrareYq 395 (665)
T KOG2422|consen 318 LHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGIL--YLIDIYALRAREYQ 395 (665)
T ss_pred hccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHH--HHHHHHHHHHHhHH
Confidence 11000000000 011111222333334556678999999999999999999554443322 11222223444455
Q ss_pred HHHHHHHHH-----HHhCCChHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHhhhhH
Q 039706 895 DAIADCNLA-----IALDGNYLKAISRRATLYEMIRD---YDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 895 eAi~~lekA-----LeldP~~~~A~~~LA~ay~~lGd---yeeAi~~yekALeL~P~~~ 945 (1166)
=-|..++.. |.+-|+.+.. ..+|..|..... .+.|..++.+|+.+.|..+
T Consensus 396 wiI~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl 453 (665)
T KOG2422|consen 396 WIIELSNEPENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHPLVL 453 (665)
T ss_pred HHHHHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHH
Confidence 444444443 3344654422 335555655544 6789999999999999543
No 410
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.02 E-value=39 Score=40.59 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=48.7
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
+..+.+|+-...-+...++-+.|+....+++...|. ..+.++.+|....+-++-..+|+++.+-..
T Consensus 299 ~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~ 364 (660)
T COG5107 299 YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLK 364 (660)
T ss_pred hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHH
Confidence 555666766666667778888888888888877776 677888888888887777777777665433
No 411
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.59 E-value=4.9 Score=41.95 Aligned_cols=86 Identities=12% Similarity=-0.150 Sum_probs=72.8
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA 918 (1166)
+..+..........++.+++...+...--+. |..+.+-..-|.++...|+|.+|+..++.+.+-.|..+.+-..++
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLR----P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLR----PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 3345556677778889999988887776666 888888888999999999999999999999998999998888899
Q ss_pred HHHHHhhCHH
Q 039706 919 TLYEMIRDYD 928 (1166)
Q Consensus 919 ~ay~~lGdye 928 (1166)
.|+..++|..
T Consensus 86 ~CL~~~~D~~ 95 (160)
T PF09613_consen 86 LCLYALGDPS 95 (160)
T ss_pred HHHHHcCChH
Confidence 9999998854
No 412
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.43 E-value=1.4 Score=34.07 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
+.++.++|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 468899999999999999999999999875
No 413
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=22 Score=40.27 Aligned_cols=105 Identities=13% Similarity=0.018 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc-cC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV-ES 872 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~-e~ 872 (1166)
-+.+..+|+..|.|.+|+..+...+. ....+...+.....+.....+|....+..++...++.|-.... ..
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~--------ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y 199 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLH--------ELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY 199 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH--------HHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC
Confidence 35577889999999999998877422 2223333344455556667788888888888888877754431 11
Q ss_pred Cch--hHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 873 HPF--AAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 873 ~p~--~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
.|. .+.+-..-|..+..-.+|.-|-.+|-.|++-
T Consensus 200 CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 200 CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 121 1222223355556667888888888888764
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.34 E-value=2.7 Score=39.69 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=50.0
Q ss_pred HHHHhhchhHHHHHHHHHHHhCC---------ChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 886 AYKALRHITDAIADCNLAIALDG---------NYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 886 ay~~lGq~eeAi~~lekALeldP---------~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
-..+.++|..|++.+.+.+.... ....+++.+|.++...|++++|+..+++|+++..+..+
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 34578999999998888886632 23567889999999999999999999999999766644
No 415
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.82 E-value=1e+02 Score=41.39 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=33.9
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAI 904 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekAL 904 (1166)
..+...+..++++-+|.+...+.+.- +..+.+ .|.+...|.+|+..+..+-
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd-----~~~av~------ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD-----PEEAVA------LLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC-----HHHHHH------HHhhHhHHHHHHHHHHhcc
Confidence 44567778888999998888887742 333333 3455567778877766554
No 416
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=85.50 E-value=68 Score=36.02 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhccc----cCCchhHHHHHHHHHHHH-HhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHH
Q 039706 855 HSEAVEHYTAALSCTV----ESHPFAAICFCNRAAAYK-ALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 855 yeEAie~y~kALel~~----e~~p~~a~a~~nlA~ay~-~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyee 929 (1166)
.+.|.+.|+.|+++.. ..+|....+..|.+..|+ -+++.++|+....+|+.-.- +.+- .+ -++
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai---------~~ld-~l--~ee 211 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI---------AELD-TL--GEE 211 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------HHhh-cc--Chh
Confidence 3467778888877642 233444455566666555 45888888887777765321 1110 01 023
Q ss_pred HHHHHHHHHHHhhhhHHhhc
Q 039706 930 AASDFHRLIALLTKQIEKSN 949 (1166)
Q Consensus 930 Ai~~yekALeL~P~~~e~~~ 949 (1166)
...+-..++++..+|+..|.
T Consensus 212 ~y~dstlImqLLrDNL~lW~ 231 (244)
T smart00101 212 SYKDSTLIMQLLRDNLTLWT 231 (244)
T ss_pred hhHHHHHHHHHHHHHHHhcc
Confidence 33445556667777777663
No 417
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.46 E-value=11 Score=40.78 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=33.6
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeA 896 (1166)
+.....+|..| ...+-++|+.+|.++|++.......++.++..+|.+|.++++++.|
T Consensus 141 ~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 33344444333 3556667777777777666444455666666666666666666655
No 418
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.38 E-value=1.2e+02 Score=40.88 Aligned_cols=24 Identities=8% Similarity=-0.169 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHH
Q 039706 881 CNRAAAYKALRHITDAIADCNLAI 904 (1166)
Q Consensus 881 ~nlA~ay~~lGq~eeAi~~lekAL 904 (1166)
..++.-+..++++-+|-......+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHh
Confidence 445556667777777766665554
No 419
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.34 E-value=1.9 Score=48.43 Aligned_cols=70 Identities=16% Similarity=0.076 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
....++=.+|...++++.|..+.++.+.++|.++.-+.-+|.+|..+|.+.-|+.+++..++..|+....
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 3455666778889999999999999999999999999999999999999999999999999999887653
No 420
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=85.15 E-value=81 Score=40.71 Aligned_cols=144 Identities=9% Similarity=-0.119 Sum_probs=69.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDP-------DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP-------~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
-+.++...+.|+.-...|.+||..-- ..+++|...-..|+..-..++-+.++...+... - +.......+
T Consensus 196 ~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~---D~~~~~~~~ 271 (881)
T KOG0128|consen 196 FGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-L---DEDTRGWDL 271 (881)
T ss_pred ccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-c---hhhhhHHHH
Confidence 34445556777777888888876321 124455555555655555566666666666543 1 111111111
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHH-------HHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIAL-------GVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeAL-------e~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
....+..... .....++.|+ ..+++.+...|.-...|..+-..-...|..-.-...+++++
T Consensus 272 ~~~sk~h~~~------------~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 272 SEQSKAHVYD------------VETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred HHHHhcchHH------------HHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1111000000 0112222222 23334444444444555555566666676666666666766
Q ss_pred HhccCCCCCccccC
Q 039706 760 HFAEKNSPPLDANG 773 (1166)
Q Consensus 760 el~p~n~~a~~~~g 773 (1166)
.-.+.....|..++
T Consensus 340 ~E~~~~~~~wi~y~ 353 (881)
T KOG0128|consen 340 AEMVLDRALWIGYG 353 (881)
T ss_pred HhccccHHHHhhhh
Confidence 66555544444443
No 421
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.89 E-value=12 Score=45.72 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=55.4
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHH
Q 039706 618 RMALGRMRDALSDCMLAVAIDPDFL-RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVS 696 (1166)
Q Consensus 618 yl~lG~y~eAI~~fekALeldP~~~-~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~ 696 (1166)
.+..+++++++..... -++-|.-+ .-...++..+..+|-.+.|++..+. |+
T Consensus 271 av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~~---------------------- 322 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----PD---------------------- 322 (443)
T ss_dssp HHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------HH----------------------
T ss_pred HHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----hH----------------------
Confidence 3456777776666531 22233333 3355666777777877777764321 11
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 697 ECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 697 e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
.+...++ ..|+.+.|++... ..+++..|..+|.+.+..|+++-|..+|+++
T Consensus 323 ---~rFeLAl---~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 323 ---HRFELAL---QLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp ---HHHHHHH---HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred ---HHhHHHH---hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 1112222 2566666665332 2346778889999999999999998888775
No 422
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=84.86 E-value=44 Score=41.73 Aligned_cols=236 Identities=14% Similarity=0.056 Sum_probs=117.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
..|+..|.+++|....-- -+--+ -|..||.-.+..=+++-|.+.|.++..+.
T Consensus 564 ~q~Ieag~f~ea~~iacl--gVv~~---DW~~LA~~ALeAL~f~~ARkAY~rVRdl~----------------------- 615 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACL--GVTDT---DWRELAMEALEALDFETARKAYIRVRDLR----------------------- 615 (1081)
T ss_pred hhhhhccchhhhhccccc--ceecc---hHHHHHHHHHhhhhhHHHHHHHHHHhccH-----------------------
Confidence 357777888877553321 11112 25566666666667888888888764320
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcc
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQS 775 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~ 775 (1166)
++.....+-.....|.. |+ -.++|.++...|++.||..+|.+.=..+.
T Consensus 616 --~L~li~EL~~~k~rge~--------------P~----~iLlA~~~Ay~gKF~EAAklFk~~G~enR------------ 663 (1081)
T KOG1538|consen 616 --YLELISELEERKKRGET--------------PN----DLLLADVFAYQGKFHEAAKLFKRSGHENR------------ 663 (1081)
T ss_pred --HHHHHHHHHHHHhcCCC--------------ch----HHHHHHHHHhhhhHHHHHHHHHHcCchhh------------
Confidence 11111111111111221 11 13467777777888888777754311100
Q ss_pred cccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCCh
Q 039706 776 MELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855 (1166)
Q Consensus 776 l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~y 855 (1166)
+...+.-.|.+-+++-|+..|.-++-..+.++-.. .... +..-+..+..+...|+.
T Consensus 664 ---------AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~------------WAr~---~kePkaAAEmLiSaGe~ 719 (1081)
T KOG1538|consen 664 ---------ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD------------WARN---IKEPKAAAEMLISAGEH 719 (1081)
T ss_pred ---------HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH------------Hhhh---cCCcHHHHHHhhcccch
Confidence 00011112234455666666666665555554100 0000 00112236667778888
Q ss_pred HHHHHHH------HHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHH
Q 039706 856 SEAVEHY------TAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 856 eEAie~y------~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyee 929 (1166)
.+|+... +-++++...........+..++.-+..+..+.-|-+.|.+.=. ...+-+++...++|.+
T Consensus 720 ~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~e 791 (1081)
T KOG1538|consen 720 VKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDE 791 (1081)
T ss_pred hhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchH
Confidence 8887643 2233332111133334444455555556666666666654321 2234556677888888
Q ss_pred HHHHHHHHHHHhhh
Q 039706 930 AASDFHRLIALLTK 943 (1166)
Q Consensus 930 Ai~~yekALeL~P~ 943 (1166)
|...-++.-++.|+
T Consensus 792 AFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 792 AFALAEKHPEFKDD 805 (1081)
T ss_pred hHhhhhhCcccccc
Confidence 88877665555444
No 423
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.75 E-value=6.2 Score=41.96 Aligned_cols=102 Identities=17% Similarity=0.008 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
+..+|..|...|++++|++.|.++...... ....+..++.+-.+.+..++|..+..+..+|-.+.....
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-----------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTS-----------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 356899999999999999999997443222 123455566677888899999999999999876542211
Q ss_pred --chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 874 --PFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 874 --p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
.....+....|..++..++|..|...|-.++.-
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 122334555677788889999999888776543
No 424
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=84.68 E-value=1.5 Score=34.72 Aligned_cols=33 Identities=6% Similarity=0.187 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
++|..||.+-+..++|++|+.+|++++++..+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999999999999875443
No 425
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.54 E-value=29 Score=36.38 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ 679 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~ 679 (1166)
+.....+-+..++.+++...+.-+--+.|.....-..-|.+++..|++.+|+..|+.+..-.|..+...
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~k 81 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAK 81 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHH
Confidence 456667777888999999999988899999999999999999999999999999999888777755433
No 426
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=83.33 E-value=19 Score=44.60 Aligned_cols=99 Identities=18% Similarity=0.056 Sum_probs=81.4
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHH-HHHHhCCChHHHHHHH------
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCN-LAIALDGNYLKAISRR------ 917 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~le-kALeldP~~~~A~~~L------ 917 (1166)
+...+...+....|+.....++..+ +..+.++.++|.+....|....|+..+. .+....|.+......+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVN----PENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQL 148 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcC----cccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHH
Confidence 5666777888888999999999988 8889999999999888887666665554 4889999988776666
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 918 ATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
+..+..+++..+|...++++..+.|++.+.
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 888888888999999999999999888543
No 427
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.73 E-value=5.5 Score=45.38 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
.++..++..+...|+++.++..+++.+.++|.+-.+|.++-..|+..|+...|+..|++.-.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999998655
No 428
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.63 E-value=6.7 Score=39.82 Aligned_cols=72 Identities=13% Similarity=0.025 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcC---ChHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHH
Q 039706 609 WRLSNRAATRMALG---RMRDALSDCMLAVA-IDPDF-LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQK 680 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG---~y~eAI~~fekALe-ldP~~-~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~ 680 (1166)
...+++|.++.... +.++.|.+++..++ ..|.. -+..+.||..++++++|+.|+.+...+|+..|++..+..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 33577777777654 56778999999996 55544 467789999999999999999999999999999765443
No 429
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=82.62 E-value=13 Score=44.86 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=25.3
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
+..+...|..|.+.|+...|+.+|..|+.+.
T Consensus 370 af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 370 AFHMVLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3444556889999999999999999998765
No 430
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.40 E-value=20 Score=40.13 Aligned_cols=62 Identities=15% Similarity=-0.050 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 627 ALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 627 AI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
|+.+|.+|+.+.|.+...|.++|.++...|+.-.|+-+|-+++-..--.+.++..+..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999996543334444444444333
No 431
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=82.28 E-value=1.1e+02 Score=35.87 Aligned_cols=105 Identities=14% Similarity=0.025 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc-cC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV-ES 872 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~-e~ 872 (1166)
-..+..+|+..++|.+|+......+ .+..++......++.+.....+|+...+..+|...++.|-.... -.
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~--------rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY 202 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLL--------RELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY 202 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc
Confidence 3567889999999999999988752 22223333333445555667889999999999999888865331 00
Q ss_pred -Cc-hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 873 -HP-FAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 873 -~p-~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
+| ..+.+=..-|..+..-.+|..|..+|-+|++-
T Consensus 203 cpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 203 CPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred cCHHHHHHHHHhccceeecccccchHHHHHHHHHcc
Confidence 11 22233334466677778999999999998874
No 432
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=82.03 E-value=1.6e+02 Score=38.26 Aligned_cols=273 Identities=10% Similarity=-0.039 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 039706 627 ALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLL 706 (1166)
Q Consensus 627 AI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l 706 (1166)
=|.-++.-+.+++.....++.|-.++...|++++-...-..+-++.|..+..|..+......+.
T Consensus 98 ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt---------------- 161 (881)
T KOG0128|consen 98 EIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMT---------------- 161 (881)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc----------------
Confidence 3455566667778788888888888888888887777777766777766555544433221111
Q ss_pred HhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccC
Q 039706 707 QNKTSNDAEIALGVIDEALFISSYSEKLLEMKAE-------ALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELD 779 (1166)
Q Consensus 707 ~~~~~gd~eeALe~lekALel~P~~~~al~~lA~-------~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld 779 (1166)
..++-..+...+++++.-. .++.+|...+. .+...++++....+|.++|....... +
T Consensus 162 ---~s~~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~------------t 225 (881)
T KOG0128|consen 162 ---QSEERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHI------------T 225 (881)
T ss_pred ---cCcchhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhh------------c
Confidence 1355566666677776433 22333333333 33445677888888888876432110 0
Q ss_pred ccchhhhhhhhhHH-HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 780 SSESTKHVSFRLWR-CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 780 ~~~~~~~~~~~~wr-~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
+ -..+|. +..+-.+|...-..++-+.++...+...-+. .........+...-.......+++.|
T Consensus 226 -----~--G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~--------~~~~~~~~~~sk~h~~~~~~~~~~~a 290 (881)
T KOG0128|consen 226 -----E--GAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDE--------DTRGWDLSEQSKAHVYDVETKKLDDA 290 (881)
T ss_pred -----c--cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchh--------hhhHHHHHHHHhcchHHHHhccHHHH
Confidence 0 012232 2334455666666667777776654322110 00000000000000111222333444
Q ss_pred HHHHHHHHhccc---cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH-HhhCHHHHHHHH
Q 039706 859 VEHYTAALSCTV---ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE-MIRDYDHAASDF 934 (1166)
Q Consensus 859 ie~y~kALel~~---e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~-~lGdyeeAi~~y 934 (1166)
+..+.+.+.... ...+.....|..+-.-....|....-...+++++.-.+.....|...+..+- .++-.+.+...+
T Consensus 291 ~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~ 370 (881)
T KOG0128|consen 291 LKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVH 370 (881)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhccccccccccccccc
Confidence 333322221110 0002233334334444455566666666777777766666666666554432 333334444555
Q ss_pred HHHHHHhhhhHH
Q 039706 935 HRLIALLTKQIE 946 (1166)
Q Consensus 935 ekALeL~P~~~e 946 (1166)
-+++...|-..+
T Consensus 371 ~ra~R~cp~tgd 382 (881)
T KOG0128|consen 371 PRAVRSCPWTGD 382 (881)
T ss_pred chhhcCCchHHH
Confidence 555555444433
No 433
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=81.81 E-value=2.2 Score=49.39 Aligned_cols=127 Identities=16% Similarity=0.078 Sum_probs=88.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCC---Cchhhhh-hhh-ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc
Q 039706 797 IFKSYFTLGRLEEAIAALERHESGNG---GKMLESL-IPL-AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE 871 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~~~---~k~le~a-~~L-~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e 871 (1166)
.+.-.+..++++.|+.-|.+++..-. ....... -.+ ...........+++...++.+.+..|+..-..++..+
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~-- 305 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDE-- 305 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccC--
Confidence 34456778888888888887654111 0000000 000 0111123344557788889999999999888888866
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
+....+++.++..+..+.++++|++++..+....|++......+..+-....++
T Consensus 306 --~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 306 --RSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred --hhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 778889999999999999999999999999999999887776666555554443
No 434
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=81.23 E-value=3.8 Score=48.29 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
--.+..||+.+++.+.|+....+.|.++|.+..-+++.|.|+..+.+|.+|...+.-+.-
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999999887766543
No 435
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.18 E-value=1.6e+02 Score=36.95 Aligned_cols=119 Identities=13% Similarity=-0.054 Sum_probs=90.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchh
Q 039706 797 IFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA 876 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~ 876 (1166)
....-...|+++...-.|++++-... .-.+.|...+......|+..-|-..+..+.++. .+..
T Consensus 303 yLdf~i~~g~~~~~~~l~ercli~cA--------------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~---~k~~ 365 (577)
T KOG1258|consen 303 YLDFEITLGDFSRVFILFERCLIPCA--------------LYDEFWIKYARWMESSGDVSLANNVLARACKIH---VKKT 365 (577)
T ss_pred HhhhhhhcccHHHHHHHHHHHHhHHh--------------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc---CCCC
Confidence 34455678999999999999732111 123334444555566689999988888888775 2445
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHH
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAAS 932 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~ 932 (1166)
+.+...-|..-...|++..|...++++..--|+...+-...+.....+|..+.+..
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 55666667777788999999999999998889999999999999999999998886
No 436
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.02 E-value=9.5 Score=35.17 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=44.8
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
....|.-++...+.++|+..++++|+.... .+....++-.+..+|...|+|.+++++.-+=+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466677888888888888888876633 3445556666777788888888887776555443
No 437
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=80.39 E-value=7.2 Score=44.02 Aligned_cols=67 Identities=13% Similarity=-0.030 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
-++=.+|+..++++.|+.+.++.+.++|..+.-+.-.|.+|.++|.+.-|+..++..++..|+.+.+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 4556788999999999999999999999999999999999999999999999999999999986543
No 438
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.28 E-value=52 Score=43.25 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=36.0
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 618 RMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 618 yl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
++++.++..-++..+..|...+ -|..|+.+|...|++++|++.+.....-
T Consensus 484 llrlen~~c~vee~e~~L~k~~----~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 484 LLRLENNHCDVEEIETVLKKSK----KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred hhhccCCCcchHHHHHHHHhcc----cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3344444445556666665544 4778899999999999999999998763
No 439
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.86 E-value=37 Score=37.34 Aligned_cols=63 Identities=13% Similarity=0.021 Sum_probs=57.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchh
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCV 677 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~ 677 (1166)
...++..+...+||...+.-++.+|.+......+-.+|.-.|+|++|..-++-+-++.|+...
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 346778899999999999999999999999999999999999999999999999999998543
No 440
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.34 E-value=76 Score=37.89 Aligned_cols=108 Identities=11% Similarity=-0.039 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhc-cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLA-GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~-~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
|+.+..+|-..++...-...+...+. ...|. .....+.....+-..|...+.|+.|-....++.--....
T Consensus 172 ~fy~~l~~E~~~~l~~~rs~l~~~lr---------tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~s 242 (493)
T KOG2581|consen 172 YFYLYLSYELEGRLADIRSFLHALLR---------TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAAS 242 (493)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHH---------HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccc
Confidence 34466777788886665555544221 01121 222334444445567778888999988777765322223
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
+...+..++.+|.+..-+.+|..|.+++-.|+...|++
T Consensus 243 nne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 243 NNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred cHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 34567778889999999999999999999999999974
No 441
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.04 E-value=2.4e+02 Score=42.35 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 876 AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 876 ~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
.++.+...|..+.++|+.++|-..|..|++++-..+++|...|.-+.
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~ 2857 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLD 2857 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35556666666677777777777777777776666666666665544
No 442
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=78.98 E-value=34 Score=42.43 Aligned_cols=125 Identities=15% Similarity=0.062 Sum_probs=84.0
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHH
Q 039706 622 GRMRDALSDCMLAVAIDPDFLRVQVR--AANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECM 699 (1166)
Q Consensus 622 G~y~eAI~~fekALeldP~~~~A~~~--LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~ 699 (1166)
+.-..|+..+..-+.++|.+.+.++. +...+..++....|...+..++..+|.++.....+..+...
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~----------- 113 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALEL----------- 113 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHH-----------
Confidence 33444677777777788888776544 47777788888888889999999999876654444332211
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHH------HHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 700 QRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMK------AEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 700 ~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~l------A~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
.......++...+.+....|.+......+ +..+..+++..++...+++++.+.|.++.
T Consensus 114 ----------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 114 ----------DGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred ----------hhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 01122223333344666777776665555 88888888889999999999988887744
No 443
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.47 E-value=9 Score=46.38 Aligned_cols=59 Identities=15% Similarity=0.008 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHhCCChHHHHH
Q 039706 853 GRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH-ITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 853 G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq-~eeAi~~lekALeldP~~~~A~~ 915 (1166)
+.|.+--..|.++|..+ |.++.+|..-|.-.+..+. .+.|.+.+.++|+.+|+.+..|.
T Consensus 119 ~~~~~v~ki~~~~l~~H----p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 119 KTYGEVKKIFAAMLAKH----PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred cchhHHHHHHHHHHHhC----CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 33555555555555554 5555555544444444443 55555555555555555554443
No 444
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.33 E-value=1.5 Score=46.37 Aligned_cols=55 Identities=29% Similarity=0.444 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhcccch
Q 039706 999 ADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSRYDL 1068 (1166)
Q Consensus 999 ~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~~YD~ 1068 (1166)
...+..|+.+..++|||+.... +......+-..+..++.||.+|.||-+|..|=.
T Consensus 18 ~~l~~~~~~~~~~~~~dr~~~~---------------~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 18 DALKLQYRELQRAYHPDRFGKA---------------SEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred hHhhhhHHHHHHhhCccccccc---------------chHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4567789999999999997632 233445577889999999999999999999843
No 445
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.92 E-value=1.3e+02 Score=38.71 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=25.3
Q ss_pred CCChHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 728 SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 728 ~P~~~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
+..+..+...+|.+|+..++|..|+..|.++.
T Consensus 501 ~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 501 NSESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred hccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 34444666679999999999999999987654
No 446
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=77.81 E-value=73 Score=38.55 Aligned_cols=173 Identities=16% Similarity=0.093 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCC-------
Q 039706 734 LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGR------- 806 (1166)
Q Consensus 734 al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd------- 806 (1166)
....+|.+++.+++|+-|...|+.+.+-...+ .+|. ++ .-..-.+|.+++..+.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~-----------------~~-A~~~Em~alsl~~~~~~~~~k~~ 270 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND-KAWK-----------------YL-AGAQEMAALSLLMQGQSISAKIR 270 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-hhHH-----------------HH-HhHHHHHHHHHHhcCCCCccccc
Confidence 44568999999999999999998776543221 1111 00 1111233444444432
Q ss_pred -------HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCch---h
Q 039706 807 -------LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPF---A 876 (1166)
Q Consensus 807 -------~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~---~ 876 (1166)
++.|...|.++-... ..............+.++...+.|.+|...+-++.......... .
T Consensus 271 ~~~~~~~le~A~~~Y~~~~~~~----------~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~ 340 (414)
T PF12739_consen 271 KDEIEPYLENAYYTYLKSALPR----------CSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGS 340 (414)
T ss_pred cccHHHHHHHHHHHHHhhhccc----------cccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 233333343310000 00000112233344666778888888888777776541011122 4
Q ss_pred HHHHHHHHHHH--HHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 877 AICFCNRAAAY--KALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 877 a~a~~nlA~ay--~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
+.++-..|.|| ........-..-++ .++--+..-|.-|.+.|+...|+..|.+|+.++.
T Consensus 341 alllE~~a~~~~~~~~~~~~~~~~r~R-------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 341 ALLLEQAAYCYASLRSNRPSPGLTRFR-------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHhhcccccCCCCccchhhH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 45555566666 11100000000000 1122233347788999999999999999998876
No 447
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.45 E-value=17 Score=33.61 Aligned_cols=58 Identities=26% Similarity=0.268 Sum_probs=46.4
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Q 039706 706 LQNKTSNDAEIALGVIDEALFISSYSE---KLLEMKAEALFMLRKYEEVIQLCEQTFHFAE 763 (1166)
Q Consensus 706 l~~~~~gd~eeALe~lekALel~P~~~---~al~~lA~~y~~lGdyeeAi~~lekALel~p 763 (1166)
+..+...+.++|+..+.++|+..++.+ .++-.++.+|...|+|.+++.+..+-+.+..
T Consensus 14 lkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 14 LKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334468899999999999999887665 4556777899999999999998877776644
No 448
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.36 E-value=23 Score=41.04 Aligned_cols=82 Identities=10% Similarity=0.060 Sum_probs=47.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH---hccCCC----CCccccCccc-ccCccchhhhhhhhhHHHHHHHHHHHHcCCH
Q 039706 736 EMKAEALFMLRKYEEVIQLCEQTFH---FAEKNS----PPLDANGQSM-ELDSSESTKHVSFRLWRCCLIFKSYFTLGRL 807 (1166)
Q Consensus 736 ~~lA~~y~~lGdyeeAi~~lekALe---l~p~n~----~a~~~~g~~l-~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~ 807 (1166)
+..|.+++..++|.+....+..+-. ...+.. .+....|.++ +-+-..-....|-++...+.+|.-|+...++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 4678888999999887666554432 221111 0101112111 1111112223455555556789999999999
Q ss_pred HHHHHHHHHH
Q 039706 808 EEAIAALERH 817 (1166)
Q Consensus 808 eeAl~~lekA 817 (1166)
+.|+-.++++
T Consensus 142 ~~ArVEfnRa 151 (449)
T COG3014 142 AKARVEFNRA 151 (449)
T ss_pred hhhHHHHHHH
Confidence 9999999986
No 449
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.78 E-value=86 Score=40.54 Aligned_cols=113 Identities=9% Similarity=0.107 Sum_probs=67.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHhhhH
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDF-LRVQVRAANCHLALGEIEDASKYFRMCLQ-SGSDVCVDQKIAVEASDGLQKA 692 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~-~~A~~~LA~lyl~lGd~eeAl~~fekALe-l~P~n~~a~~~l~Ea~~~L~k~ 692 (1166)
-..+.+...|.-|+...+. ..++++. ...+...|.-++..|++++|...|.+++. ++|. ++...+-+.
T Consensus 341 L~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s---------~Vi~kfLda 410 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS---------EVIKKFLDA 410 (933)
T ss_pred HHHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH---------HHHHHhcCH
Confidence 3456666777888776654 3445544 35677889999999999999999999886 3443 122222222
Q ss_pred HhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHH
Q 039706 693 QKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCE 756 (1166)
Q Consensus 693 ~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~le 756 (1166)
+....+ ..+++.+.+..-.+.+-...+-.||.++++.++-.+..+
T Consensus 411 q~IknL-------------------t~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 411 QRIKNL-------------------TSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHHHH-------------------HHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHh
Confidence 222111 122233333322233334456688999998887655543
No 450
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.73 E-value=1.1e+02 Score=37.66 Aligned_cols=157 Identities=14% Similarity=-0.002 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CC--CchhHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS-GS--DVCVDQKIAVE 684 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel-~P--~n~~a~~~l~E 684 (1166)
..+|+.++.+|... ..++=....++.++.+=+....-..|+..|.. ++...|..+|.+|+.. -| .+...+..+..
T Consensus 99 kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeK 176 (711)
T COG1747 99 KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEK 176 (711)
T ss_pred HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 36688999999998 55667788899999988888777888888877 8999999999999873 22 11111111111
Q ss_pred HHH-----------HhhhHHhHH---HHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH-----
Q 039706 685 ASD-----------GLQKAQKVS---ECMQRSAQLLQ-NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFM----- 744 (1166)
Q Consensus 685 a~~-----------~L~k~~~~~---e~~~~a~~~l~-~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~----- 744 (1166)
+.. .+.+.+.-. .........+. +....+|.+||..+.-.|+.+..+..++..+...+..
T Consensus 177 L~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~ 256 (711)
T COG1747 177 LPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGH 256 (711)
T ss_pred HHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccc
Confidence 111 111111100 00111111111 3347889999999999999998888777777666655
Q ss_pred ---------------ccCHHHHHHHHHHHHHhccCCC
Q 039706 745 ---------------LRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 745 ---------------lGdyeeAi~~lekALel~p~n~ 766 (1166)
-.++.+|+..|++.+..+..+.
T Consensus 257 ~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 257 SQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred hhHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence 4567888999998888776553
No 451
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.12 E-value=1e+02 Score=34.57 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=42.5
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhcccc-C-CchhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE-S-HPFAAICFCNRAAAYKALRHITDAIADCNLA 903 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e-~-~p~~a~a~~nlA~ay~~lGq~eeAi~~lekA 903 (1166)
.....+|..|+..|+|++|+.+|+.+...... . ......++..+..|+..+|+.++.+..+-+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33456788888999999999988888654311 1 1223455666777788888877777665444
No 452
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.62 E-value=1.8e+02 Score=35.13 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
+..|.+++..+|+|..|++.++...- .....+ -.-....+..++..|-+|+..++|.+|+..|...|-.-..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl-~~~~l~-----~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r-- 196 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDL-NKKGLY-----TKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR-- 196 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCc-ccchhh-----ccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34567789999999999999987421 111000 1112233456777899999999999999999998743200
Q ss_pred chhHHHHHHHHHHHH-HhhchhHHHHHHHHHHHhCCC
Q 039706 874 PFAAICFCNRAAAYK-ALRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~-~lGq~eeAi~~lekALeldP~ 909 (1166)
....+..+..-|- -.+..++....+.-++.+.|.
T Consensus 197 --~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 197 --TKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred --hhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 0001111111111 235566677777777777774
No 453
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.23 E-value=12 Score=42.59 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCL 669 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekAL 669 (1166)
+...+..|...|.+.+|++.+++++.++|-+...+..+-.+|..+|+--.|...|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45678889999999999999999999999999999999999999999999998888743
No 454
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.93 E-value=12 Score=42.65 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
.+...+..|...|.+.+|++++++++.++|-+...+..+-.+|..+||--.|+..|++.-+....
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vlea 345 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 44456778899999999999999999999999999999999999999999999999988766443
No 455
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.91 E-value=19 Score=37.21 Aligned_cols=81 Identities=11% Similarity=-0.125 Sum_probs=64.8
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 039706 844 SAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEM 923 (1166)
Q Consensus 844 ~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~ 923 (1166)
..........+..++...+...--+. |..+.+-.--|.++...|+|.+|+..++...+-.+..+.+.-.++.|+..
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLr----P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLR----PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC----CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 33444555788888877777665555 77788888889999999999999999999988888878888888999999
Q ss_pred hhCHH
Q 039706 924 IRDYD 928 (1166)
Q Consensus 924 lGdye 928 (1166)
+||.+
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 88854
No 456
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=73.30 E-value=1.3e+02 Score=34.96 Aligned_cols=143 Identities=15% Similarity=0.022 Sum_probs=91.7
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCc------------hhHHHHHH
Q 039706 620 ALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ----SGSDV------------CVDQKIAV 683 (1166)
Q Consensus 620 ~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe----l~P~n------------~~a~~~l~ 683 (1166)
..+++.+.+..+++.+...|-+.+.++..+.++.++| ++.+...+...+. .-|.- ......+.
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL 189 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWL 189 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHH
Confidence 6678899999999999999999999999999999999 5666666554443 22220 01111111
Q ss_pred HHHHHhh---------hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHccCHHHH
Q 039706 684 EASDGLQ---------KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY---SEKLLEMKAEALFMLRKYEEV 751 (1166)
Q Consensus 684 Ea~~~L~---------k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~---~~~al~~lA~~y~~lGdyeeA 751 (1166)
.-...-. ..............+......+..+.|+..++..+..... ....++.+|+++...|.++-|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA 269 (301)
T TIGR03362 190 AQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELA 269 (301)
T ss_pred HhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1000000 0000001111222233334578999999999987654332 235667889999999999999
Q ss_pred HHHHHHHHHhcc
Q 039706 752 IQLCEQTFHFAE 763 (1166)
Q Consensus 752 i~~lekALel~p 763 (1166)
...|+.+.+...
T Consensus 270 ~~ll~~L~~~~~ 281 (301)
T TIGR03362 270 QQLYAALDQQIQ 281 (301)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 457
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.46 E-value=20 Score=43.10 Aligned_cols=130 Identities=13% Similarity=0.046 Sum_probs=94.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHH
Q 039706 618 RMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSE 697 (1166)
Q Consensus 618 yl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e 697 (1166)
....|+...|-+-...+|...|..+......+.+...+|+|+.|.+.+.-+-..-... .....
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-----------------~~~~~ 361 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-----------------DSTLR 361 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-----------------chHHH
Confidence 3467899999999999999999999988999999999999999998876443321110 00111
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCc
Q 039706 698 CMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 698 ~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~ 769 (1166)
+. .......++|..|+...+-.|.-.-..+++....|-....+|-+++|.-++.+++.+.|.....|
T Consensus 362 ~~-----~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 362 CR-----LRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HH-----HHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 11 11123467888888887777766666677777667777788889999999999999988655443
No 458
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.22 E-value=16 Score=39.60 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC----hHHHHHHHHHHHHHhhCHHHH
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN----YLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~----~~~A~~~LA~ay~~lGdyeeA 930 (1166)
-++|...|-++-. ...-..+.+.+.+|..|. ..+.++|+..+.++|++.+. +++.+..|+.+|..+++++.|
T Consensus 122 d~~A~~~fL~~E~---~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEG---TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcC---CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3556666655432 223456778888887666 67889999999999999643 589999999999999999998
Q ss_pred HH
Q 039706 931 AS 932 (1166)
Q Consensus 931 i~ 932 (1166)
.-
T Consensus 198 Yi 199 (203)
T PF11207_consen 198 YI 199 (203)
T ss_pred hh
Confidence 64
No 459
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.91 E-value=73 Score=33.10 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCch
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVC 676 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~ 676 (1166)
......-+...+..++...+...--+.|+.......-|.++...|++.+|+..|+....-.+..+
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 34445555688999999888888889999999999999999999999999999999877665533
No 460
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=71.86 E-value=42 Score=40.60 Aligned_cols=149 Identities=22% Similarity=0.200 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCC------------------------chhhh-------------hhh-hccch
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGG------------------------KMLES-------------LIP-LAGTV 836 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~------------------------k~le~-------------a~~-L~~~~ 836 (1166)
..++--|...|.|+.|+.++.+.+-.-.- +.+.. ..+ +....
T Consensus 122 S~laadhvAAGsFetAm~LLnrQiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l 201 (422)
T PF06957_consen 122 SSLAADHVAAGSFETAMQLLNRQIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPLSL 201 (422)
T ss_dssp --SHHHHHHCT-HHHHHHHHHHHC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB----H
T ss_pred CCcHHHHHHhCCHHHHHHHHHHHhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcCCH
Confidence 44667789999999999999984320000 00000 001 11233
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc----cCCchhHHH--H------HHHHHHHHHhhchh---HHHHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV----ESHPFAAIC--F------CNRAAAYKALRHIT---DAIADCN 901 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~----e~~p~~a~a--~------~nlA~ay~~lGq~e---eAi~~le 901 (1166)
..+...+..|..++..|++.+|+..|+.+|..-+ ++......+ + |.+|.. +.+.+-+ ...+.-+
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~-iEl~Rr~l~~~~~~~~k 280 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLS-IELERRELPKDPVEDQK 280 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHCTS-TTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhhHH
Confidence 4455566689999999999999999999986532 221111111 1 122221 2222211 2223333
Q ss_pred HHHHh---------CCChHHHHHHHHH-HHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 902 LAIAL---------DGNYLKAISRRAT-LYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 902 kALel---------dP~~~~A~~~LA~-ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
+.+++ .|.+...-++.|. +.++.++|.-|...-++.|++.|..
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 44433 4444444444444 3457899999999999999886643
No 461
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.47 E-value=4.9 Score=28.64 Aligned_cols=21 Identities=19% Similarity=-0.042 Sum_probs=10.2
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDC 631 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~f 631 (1166)
++++|.++..+|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344455555555555554443
No 462
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=70.70 E-value=6.4 Score=31.16 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
.+|..+|.+-+..++|++|+.+|.++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35666777777777777777777777765
No 463
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=69.49 E-value=11 Score=42.09 Aligned_cols=62 Identities=18% Similarity=0.073 Sum_probs=52.8
Q ss_pred HHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 039706 858 AVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEM 923 (1166)
Q Consensus 858 Aie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~ 923 (1166)
|+.+|.+|+.+. |.....|+.+|.++...++.-+|+-+|-+++...--.+.|..++..++.+
T Consensus 1 A~~~Y~~A~~l~----P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL----PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-----TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC----CCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 788999999998 99999999999999999999999999999997765568888888888877
No 464
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=69.40 E-value=5.2 Score=28.50 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 039706 643 RVQVRAANCHLALGEIEDASKYFR 666 (1166)
Q Consensus 643 ~A~~~LA~lyl~lGd~eeAl~~fe 666 (1166)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 578899999999999999999875
No 465
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=69.17 E-value=23 Score=36.42 Aligned_cols=53 Identities=23% Similarity=0.101 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIE 659 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~e 659 (1166)
-......+|...+..|+|.-|+..++.++..+|++..+...++.+|.++|.-.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 34567889999999999999999999999999999999999999998876543
No 466
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.07 E-value=3.7e+02 Score=35.38 Aligned_cols=106 Identities=17% Similarity=0.183 Sum_probs=63.0
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccc----cCCchhHH--HHHHHHHHHH-----Hh-------hchhHH--HH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV----ESHPFAAI--CFCNRAAAYK-----AL-------RHITDA--IA 898 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~----e~~p~~a~--a~~nlA~ay~-----~l-------Gq~eeA--i~ 898 (1166)
+...+..|..+...|++.+|+++|+.+|-.-+ ++....+. -+..++.-|. .+ ...+++ ++
T Consensus 991 l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElA 1070 (1202)
T KOG0292|consen 991 LNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELA 1070 (1202)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHH
Confidence 44556778889999999999999999875432 22222222 2222232222 11 112233 22
Q ss_pred HHHHHHHhCCChH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 899 DCNLAIALDGNYL-KAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 899 ~lekALeldP~~~-~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.|=.-..+.|-+. -++..--.++.+++++..|...-.+.+++-|..
T Consensus 1071 aYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1071 AYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence 2222234455443 344444557789999999999999999987764
No 467
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=68.35 E-value=50 Score=38.42 Aligned_cols=90 Identities=20% Similarity=0.154 Sum_probs=68.8
Q ss_pred cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--CCChHHHHHHHHHHHHHhhCHHH
Q 039706 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--DGNYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 852 ~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--dP~~~~A~~~LA~ay~~lGdyee 929 (1166)
.-+|..-..+|.....+. .++.+-.|++.+....--...++...+....- -..|...+-.+|.++.++|+.++
T Consensus 309 dtDW~~I~aLYdaL~~~a-----pSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~e 383 (415)
T COG4941 309 DTDWPAIDALYDALEQAA-----PSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEE 383 (415)
T ss_pred CCChHHHHHHHHHHHHhC-----CCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHH
Confidence 346777777777766654 34566678888887777777888877766554 23566678889999999999999
Q ss_pred HHHHHHHHHHHhhhhHH
Q 039706 930 AASDFHRLIALLTKQIE 946 (1166)
Q Consensus 930 Ai~~yekALeL~P~~~e 946 (1166)
|...|++++.+.++..+
T Consensus 384 Ar~aydrAi~La~~~ae 400 (415)
T COG4941 384 ARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHHHHhcCChHH
Confidence 99999999999776655
No 468
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.71 E-value=52 Score=37.26 Aligned_cols=107 Identities=11% Similarity=-0.031 Sum_probs=62.0
Q ss_pred HcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc-cCCchhHHHHH
Q 039706 803 TLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV-ESHPFAAICFC 881 (1166)
Q Consensus 803 ~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~-e~~p~~a~a~~ 881 (1166)
..++|++|++.+... +..+++.+++..|.++..-.++.-. ...+.+....-
T Consensus 2 ~~kky~eAidLL~~G----------------------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~ 53 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG----------------------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIA 53 (260)
T ss_dssp HTT-HHHHHHHHHHH----------------------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHH
T ss_pred ccccHHHHHHHHHHH----------------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 467888888888774 5566777777777665555444321 11223333334
Q ss_pred HHHHHHHHhhchh-HHHHHHHHHHHhC------CChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 882 NRAAAYKALRHIT-DAIADCNLAIALD------GNYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 882 nlA~ay~~lGq~e-eAi~~lekALeld------P~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
++..++.....-+ +-....++|++-. -.++..+..+|..|.+.+++.+|..+|-..
T Consensus 54 rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 54 RLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 5565655554322 2334444554432 246889999999999999999999887543
No 469
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.50 E-value=2.9e+02 Score=35.29 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=15.2
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.-++..|+|++|++.+++.- +.|.+
T Consensus 513 f~~~~~g~~~~AL~~i~~L~-liP~~ 537 (613)
T PF04097_consen 513 FDLYHAGQYEQALDIIEKLD-LIPLD 537 (613)
T ss_dssp HHHHHTT-HHHHHHHHHHTT--S-S-
T ss_pred HHHHHcCCHHHHHHHHHhCC-CCCCC
Confidence 34567899999998887643 66644
No 470
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.15 E-value=41 Score=41.76 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=62.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH
Q 039706 799 KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 799 ~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
.+..++|+++.|..+..++ .....|..+|.+....+++..|.++|.+|-.+.
T Consensus 645 elal~lgrl~iA~~la~e~-------------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--------- 696 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-------------------NSEVKWRQLGDAALSAGELPLASECFLRARDLG--------- 696 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-------------------cchHHHHHHHHHHhhcccchhHHHHHHhhcchh---------
Confidence 3456889999998887764 234567888999999999999999999996543
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHH-HHHHHhhCHHHHHHHHHHH
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRA-TLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA-~ay~~lGdyeeAi~~yekA 937 (1166)
.|-.++...|+-+.-...-..+-+... .++| .+|...|+++++++.+...
T Consensus 697 ---~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 697 ---SLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---hhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 111233334443321111111111111 1222 3577888888888776654
No 471
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=65.64 E-value=16 Score=28.46 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCChHHHHHH--HHHHHHhCCC
Q 039706 611 LSNRAATRMALGRMRDALSD--CMLAVAIDPD 640 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~--fekALeldP~ 640 (1166)
++..|..+...|+|++|+.. |.-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44556666666666666666 3355555554
No 472
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=64.80 E-value=2.1e+02 Score=31.86 Aligned_cols=54 Identities=11% Similarity=0.139 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHh-----CCChH---HHHHHHHHHH-HHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 893 ITDAIADCNLAIAL-----DGNYL---KAISRRATLY-EMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 893 ~eeAi~~lekALel-----dP~~~---~A~~~LA~ay-~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.+.|...|++|+.+ .|.++ ...++.+..| ..+++.++|+...++|+...-...+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 46677788887765 35444 3344455544 5689999999999888876555544
No 473
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=64.43 E-value=21 Score=42.85 Aligned_cols=103 Identities=12% Similarity=0.083 Sum_probs=64.1
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccc-----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTV-----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~-----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
..+..++.-.|+|..|++.++.. +++. .-.+....++|..|-+|+.+++|.+|+..|..+|-.--.....+..+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~ 204 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR 204 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34567788899999999987643 2221 12355677899999999999999999999998875321111111112
Q ss_pred HHHHHH-hhCHHHHHHHHHHHHHHhhhhHH
Q 039706 918 ATLYEM-IRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 918 A~ay~~-lGdyeeAi~~yekALeL~P~~~e 946 (1166)
..-|.. .+..++....+--++.+.|...+
T Consensus 205 ~~q~d~i~K~~eqMyaLlAic~~l~p~~ld 234 (404)
T PF10255_consen 205 SYQYDQINKKNEQMYALLAICLSLCPQRLD 234 (404)
T ss_pred cchhhHHHhHHHHHHHHHHHHHHhCCCCCC
Confidence 112221 23445555555556666665543
No 474
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.22 E-value=3.6e+02 Score=33.41 Aligned_cols=71 Identities=17% Similarity=0.016 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCchhHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGE-IEDASKYFRMCLQSGSDVCVDQK 680 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd-~eeAl~~fekALel~P~n~~a~~ 680 (1166)
.|.+...-..+.+.|.+--..|.++|..+|+++..|...|.-.+..+. .+.|...|.++|+.+|+++.-+.
T Consensus 107 lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 107 LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 344444444445558888899999999999999999999998888776 99999999999999999765443
No 475
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=63.19 E-value=17 Score=28.34 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhCHHHHHHH
Q 039706 913 AISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
.++.+|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 345555555555555555555
No 476
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.60 E-value=2.6e+02 Score=33.61 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=68.4
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--------CChHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD--------GNYLK 912 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--------P~~~~ 912 (1166)
.+..+|.-|...|+++.|++.|-++-..- .+.......|.|+-.+-..+++|..-..+..+|...- .-.++
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYC-TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 45667889999999999999999965433 1223345567777777778899888777777776541 01234
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
+...-|.+.+.+++|..|..+|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55666777777889999998876543
No 477
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.44 E-value=96 Score=36.00 Aligned_cols=110 Identities=14% Similarity=0.073 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHH
Q 039706 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAI 811 (1166)
Q Consensus 732 ~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl 811 (1166)
......+|.+|.+.++|..|.+.+.-. |. +........-.++..+..+|.+|...++..+|.
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I----~~--------------~tg~~~~d~~~kl~l~iriarlyLe~~d~veae 164 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGI----PL--------------DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAE 164 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcc----Cc--------------ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 356788999999999999998776422 11 222222233445566788999999999999999
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
.+..++.-..... ....-....-.-.|.++-..++|-||...|.+...
T Consensus 165 ~~inRaSil~a~~--------~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 165 AYINRASILQAES--------SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHhhhcc--------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999852211110 00000111112235556666778788777776654
No 478
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.42 E-value=1.2e+02 Score=36.47 Aligned_cols=128 Identities=20% Similarity=0.167 Sum_probs=71.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC-CCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESG-NGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~-~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
...+..++..++|..|...+...... .+... -........|..+...-+|.+|.++++..+....
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-----------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~--- 200 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREE-----------YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDK--- 200 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh---
Confidence 45677788999999999999996543 11110 1223334456777889999999999999886430
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC------h--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN------Y--LKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~------~--~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
+ +......+..+-..-++...+...+..... . ..-++.-|.--...|+|+.|+..+=+++++.
T Consensus 201 ~-----l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 201 A-----LNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred h-----hHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0 000111112222222222222222222111 1 1112222333345788999999999999874
No 479
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=58.36 E-value=4e+02 Score=32.13 Aligned_cols=130 Identities=6% Similarity=-0.035 Sum_probs=91.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHH
Q 039706 622 GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGE--IEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECM 699 (1166)
Q Consensus 622 G~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd--~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~ 699 (1166)
.-.++-+.....+|+.+|+...+|+.+..++.+.+. +..-++..+++++.+|.+-.++..-.-+
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV-------------- 154 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV-------------- 154 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH--------------
Confidence 356777888999999999999999999999998764 6788899999999999875544321111
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc------cC------HHHHHHHHHHHHHhccCCCC
Q 039706 700 QRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML------RK------YEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 700 ~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l------Gd------yeeAi~~lekALel~p~n~~ 767 (1166)
.-..........+=+++.+++|.-++.+..+|..+..++-.+ |. ...-++....|+-.+|++..
T Consensus 155 ----~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS 230 (421)
T KOG0529|consen 155 ----VEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQS 230 (421)
T ss_pred ----HHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccc
Confidence 001111123466678888899988999988988887776632 31 23345555666666777666
Q ss_pred Cc
Q 039706 768 PL 769 (1166)
Q Consensus 768 a~ 769 (1166)
+|
T Consensus 231 ~W 232 (421)
T KOG0529|consen 231 CW 232 (421)
T ss_pred ee
Confidence 54
No 480
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.33 E-value=4.7e+02 Score=32.54 Aligned_cols=65 Identities=6% Similarity=-0.020 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 622 GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 622 G~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
-++.--...|.++|... .+-.+|+.++.||... ..++-...+++..+.+-++...-..++..+..
T Consensus 80 ~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 80 HKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK 144 (711)
T ss_pred hHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 34444456788887754 5667899999999987 66677778888887766655444444444444
No 481
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=57.30 E-value=3.7e+02 Score=31.29 Aligned_cols=165 Identities=12% Similarity=0.019 Sum_probs=87.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hccCCCCCccccCcccccCccchhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFH----FAEKNSPPLDANGQSMELDSSESTK 785 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALe----l~p~n~~a~~~~g~~l~ld~~~~~~ 785 (1166)
..+++.+.++.+++.+..+|.-.+.++..+.++.++| ++.+...+...+. .-|.... +...|+....
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~-------L~F~DGtPFa- 181 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLE-------LKFSDGTPFA- 181 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhh-------cccCCCCCCC-
Confidence 3678899999999999999999999999999999999 5555554444333 2232111 1111222111
Q ss_pred hhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHH
Q 039706 786 HVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAA 865 (1166)
Q Consensus 786 ~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kA 865 (1166)
....+.|. ...........- ..................+..+...+..++|+..++..
T Consensus 182 d~~T~~WL---------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~ 239 (301)
T TIGR03362 182 DDETRAWL---------------------AQHATRSNAASV-APVAEVGEESDWEELREEARALAAEGGLEAALQRLQQR 239 (301)
T ss_pred CHHHHHHH---------------------Hhcccccccccc-cccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 11112221 110000000000 00000000011222223456667777888888888776
Q ss_pred HhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 866 LSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 866 Lel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
+... ............++.++...|+++-|+..|....+.
T Consensus 240 ~~~~-~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 240 LAQA-REPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred cccC-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5432 112333444556677777778888888877776654
No 482
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.88 E-value=2.5e+02 Score=36.19 Aligned_cols=56 Identities=9% Similarity=0.087 Sum_probs=42.7
Q ss_pred cCCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhccCC
Q 039706 710 TSNDAEIALGVIDEALFIS-SYSEKLLEMKAEALFML---------RKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~-P~~~~al~~lA~~y~~l---------GdyeeAi~~lekALel~p~n 765 (1166)
..|+-++|+...-.+++.. |-.++.+.+-|++|-.+ +..+.|+..|+++.+..|..
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 4788999999888888764 55567777777777553 45678899999999887754
No 483
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.62 E-value=37 Score=43.66 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVA 636 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALe 636 (1166)
+-..|.-++..|++++|...|-++|.
T Consensus 371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 371 HRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 34468888999999999999999886
No 484
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.45 E-value=8.7e+02 Score=37.14 Aligned_cols=41 Identities=15% Similarity=0.077 Sum_probs=31.9
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCN 882 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~n 882 (1166)
.+..+...|..+.+.|++++|-..|..|++++ .....+|..
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~----~~l~KaW~~ 2851 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQID----DGLGKAWAE 2851 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHH----hhhHHHHHH
Confidence 45566677999999999999999999999987 333444443
No 485
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=56.26 E-value=57 Score=32.77 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=53.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 039706 735 LEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAAL 814 (1166)
Q Consensus 735 l~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~l 814 (1166)
+.++|...++.+++-.+|-.|++|+.+..+.... ............+..+.+||..+...|+.+-.++++
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~----------~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYL 73 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDES----------NEIELEDLLTISVISCHNLADFWRSQGDSDYELKYL 73 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccc----------ccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHH
Confidence 5677888888899999999999998876543211 112223334445556788999999999999999999
Q ss_pred HHH
Q 039706 815 ERH 817 (1166)
Q Consensus 815 ekA 817 (1166)
+-|
T Consensus 74 qlA 76 (140)
T PF10952_consen 74 QLA 76 (140)
T ss_pred HHH
Confidence 876
No 486
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=55.49 E-value=1.1e+02 Score=33.76 Aligned_cols=56 Identities=9% Similarity=0.124 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCC
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~ 766 (1166)
.+...+||...+.-++..|.+...+..+-.+|+-.|+|++|...++-+-.+.|+..
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 57788999999999999999999999999999999999999999998888877653
No 487
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.12 E-value=50 Score=33.98 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCH
Q 039706 698 CMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKY 748 (1166)
Q Consensus 698 ~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdy 748 (1166)
.+..+...+ ..|++.-|+++++.++..+|++..+...++.+|..++.-
T Consensus 73 vl~~A~~~~---~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 73 VLERAQAAL---AAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHH---HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 344444444 389999999999999999999999999999999887643
No 488
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=54.99 E-value=1.4e+02 Score=37.16 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=44.4
Q ss_pred hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhh
Q 039706 708 NKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHV 787 (1166)
Q Consensus 708 ~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~ 787 (1166)
..-...|..|+-.|-.+-++.|.. .-..++.+|.+++......-.. .+
T Consensus 270 ~ghl~~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n----------------~H- 317 (618)
T PF05053_consen 270 MGHLARYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNN----------------HH- 317 (618)
T ss_dssp TTTTTT-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT-------------------
T ss_pred cCchhhCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcC----------------Cc-
Confidence 334677889998888888887742 1233455555555543321100 01
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 788 SFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 788 ~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
++.|..+|-.|++.++|.+|+..+..+
T Consensus 318 ---vYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 318 ---VYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp ---SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ---cccceehhhHHHHHHHHHHHHHHHHHH
Confidence 123566888899999999999998875
No 489
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=53.79 E-value=15 Score=42.16 Aligned_cols=76 Identities=8% Similarity=0.004 Sum_probs=49.0
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHH-HHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCN-RAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~n-lA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
.++..|...+.-..+.+-|.+--..|.++++.. |.++.+|.. -+.-|...++++.|...+.++|.++|..+..|+
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh----P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH----PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 334444444555566666777777777777766 777777654 333455667777777777777777777776654
Q ss_pred H
Q 039706 916 R 916 (1166)
Q Consensus 916 ~ 916 (1166)
.
T Consensus 181 e 181 (435)
T COG5191 181 E 181 (435)
T ss_pred H
Confidence 3
No 490
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.85 E-value=6.8e+02 Score=33.10 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=40.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFL-RVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~-~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
.+|+..|+|++|+++++.. |+.. .++...|..|++.++|..|.++|-+.++
T Consensus 366 k~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 6789999999999888654 4332 4778889999999999999988876543
No 491
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=52.67 E-value=31 Score=39.68 Aligned_cols=68 Identities=13% Similarity=-0.042 Sum_probs=55.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDFLRVQVR-AANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~~~A~~~-LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
+.--.+.+-|.+--..|.++++.+|.+++.|.. -+.-|...++++.|...|.++|.++|+++.-|..+
T Consensus 114 ~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 114 AAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 333344567778888999999999999999976 56677888999999999999999999987655443
No 492
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.20 E-value=2.9e+02 Score=33.08 Aligned_cols=60 Identities=12% Similarity=-0.111 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH--HcCChHHHHHHHHHHHHc
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFL--RVQVRAANCHL--ALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~--~A~~~LA~lyl--~lGd~eeAl~~fekALel 671 (1166)
..++..++..++|..|...+..++..-|... ..+..++.+|. ..-++.+|...+++++..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4578889999999999999999988533333 45566655554 467899999999988764
No 493
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.00 E-value=20 Score=29.31 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHH
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIA 939 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALe 939 (1166)
.+.+|.+|..+|+++.|...+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36799999999999999999999994
No 494
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=51.89 E-value=84 Score=43.36 Aligned_cols=87 Identities=15% Similarity=0.029 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHh----CCCh--HHHHHHHHHHHHHcc--------------------CHHHHHHHHHHHHHhccCC
Q 039706 712 NDAEIALGVIDEALFI----SSYS--EKLLEMKAEALFMLR--------------------KYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 712 gd~eeALe~lekALel----~P~~--~~al~~lA~~y~~lG--------------------dyeeAi~~lekALel~p~n 765 (1166)
..+++|+.+|.++... .|.- .++....+.++..+. .-.++...+.+++.+....
T Consensus 359 ~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~ 438 (1185)
T PF08626_consen 359 DLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD 438 (1185)
T ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh
Confidence 3467888888888632 2322 355566677766666 5666777777776543321
Q ss_pred CCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 766 SPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 766 ~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
.. ..-++.+|..+|.+|..+|-..++.=+++.+
T Consensus 439 l~-------------------~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l 471 (1185)
T PF08626_consen 439 LS-------------------VEDQIRIYSGLASVYGSLGFHRKKAFVLREL 471 (1185)
T ss_pred CC-------------------HHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 11 1223445677888999888887777666664
No 495
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=50.34 E-value=25 Score=39.08 Aligned_cols=95 Identities=18% Similarity=0.064 Sum_probs=54.5
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCch----h-----HHHHHHHHHHHHHhhchhHHHHHHHHHHHh-----CCChHHH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPF----A-----AICFCNRAAAYKALRHITDAIADCNLAIAL-----DGNYLKA 913 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~----~-----a~a~~nlA~ay~~lGq~eeAi~~lekALel-----dP~~~~A 913 (1166)
-++..|+|+.|++...-||+.+... |. + +.-...-+......|+.-+. ..+.....+ -|+.+.+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~-Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTM-PDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCC-CccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHH
Confidence 3578999999999999999876211 11 1 11222223333344442111 112222222 1554444
Q ss_pred --HHHHHHHHH---------HhhCHHHHHHHHHHHHHHhhhh
Q 039706 914 --ISRRATLYE---------MIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 914 --~~~LA~ay~---------~lGdyeeAi~~yekALeL~P~~ 944 (1166)
|...|..++ ..++...|+.+|++|++++|+.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 444566553 3467889999999999997664
No 496
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.13 E-value=49 Score=41.19 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHH
Q 039706 717 ALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCL 796 (1166)
Q Consensus 717 ALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~l 796 (1166)
.+.+.++||++.++.. .+-++.+++|+++.|.++..++-.. ..|..
T Consensus 626 ~~g~~e~AL~~s~D~d----~rFelal~lgrl~iA~~la~e~~s~------------------------------~Kw~~ 671 (794)
T KOG0276|consen 626 SQGMKEQALELSTDPD----QRFELALKLGRLDIAFDLAVEANSE------------------------------VKWRQ 671 (794)
T ss_pred hccchHhhhhcCCChh----hhhhhhhhcCcHHHHHHHHHhhcch------------------------------HHHHH
Confidence 3445566677766543 3456778899999998776554211 12567
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 039706 797 IFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekA 817 (1166)
||.+....+++..|.+++.++
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHhhcccchhHHHHHHhh
Confidence 999999999999999999986
No 497
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=50.01 E-value=7.3e+02 Score=32.59 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccc-----CCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhC
Q 039706 998 VADIKRGYRKAALRHHPDKAGQSLVR-----SDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLS 1058 (1166)
Q Consensus 998 ~~eIkkaYrklAlk~HPDK~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLs 1058 (1166)
..++|..|.-+-..+||++....+.. ++.++. ...|..-..-.+-+.|+.++..|+..+
T Consensus 386 ~qe~kdLY~iLEveF~PL~l~k~lq~ll~~ls~~~~~--~QYI~sLq~v~~~RllqQvSqiY~sIs 449 (988)
T KOG2072|consen 386 DQEVKDLYNILEVEFHPLKLCKKLQPLLDKLSESPDK--SQYIPSLQDVIILRLLQQVSQIYESIS 449 (988)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCc--cccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 35688888888888898886432210 111111 122333344567889999999998776
No 498
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=48.82 E-value=1.9e+02 Score=34.67 Aligned_cols=115 Identities=11% Similarity=-0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcC--ChHHHHHHHH--HHHHcCCCchhHHHHHH
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDP-----DFLRVQVRAANCHLALG--EIEDASKYFR--MCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP-----~~~~A~~~LA~lyl~lG--d~eeAl~~fe--kALel~P~n~~a~~~l~ 683 (1166)
.++..++..++|..|+..|..++...+ .....+..++.+|..-. ++++|..+++ ..-.+............
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~ 214 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELE 214 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHH
Q ss_pred HHHHHhhhHHhH-----------------HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 039706 684 EASDGLQKAQKV-----------------SECMQRSAQLLQNKTSNDAEIALGVIDEALFI 727 (1166)
Q Consensus 684 Ea~~~L~k~~~~-----------------~e~~~~a~~~l~~~~~gd~eeALe~lekALel 727 (1166)
.+.......... .-....+..+......|+|+.|+..+-+++++
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 215 DVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
No 499
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.47 E-value=94 Score=34.77 Aligned_cols=63 Identities=13% Similarity=0.004 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN------YLKAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~------~~~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
.....+...+|.-|+.+|+|++|+.+|+.+...... ....+..+..|+..+|+.+..+...-+
T Consensus 175 R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 175 RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344556678999999999999999999999755321 245677788899999998887766443
No 500
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.40 E-value=28 Score=28.49 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=11.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 039706 648 AANCHLALGEIEDASKYFRMCL 669 (1166)
Q Consensus 648 LA~lyl~lGd~eeAl~~fekAL 669 (1166)
+|.+|..+|+++.|...++.++
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 4444555555555555555444
Done!