Query 039706
Match_columns 1166
No_of_seqs 931 out of 5337
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 21:34:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y4t_A DNAJ homolog subfamily 100.0 9.5E-39 3.3E-43 372.9 42.1 405 591-1069 41-450 (450)
2 1w3b_A UDP-N-acetylglucosamine 100.0 4.3E-28 1.5E-32 278.7 35.8 293 576-946 14-306 (388)
3 3ieg_A DNAJ homolog subfamily 100.0 2E-27 7E-32 265.8 39.3 323 576-948 18-343 (359)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.2E-28 1.1E-32 279.8 31.4 298 608-948 67-376 (388)
5 3ieg_A DNAJ homolog subfamily 99.9 7.1E-25 2.4E-29 245.1 38.8 276 608-948 3-309 (359)
6 3fp2_A TPR repeat-containing p 99.9 2.4E-25 8.3E-30 265.2 33.6 313 591-948 40-415 (537)
7 3hym_B Cell division cycle pro 99.9 2.7E-25 9.1E-30 246.5 30.1 279 609-948 23-307 (330)
8 2gw1_A Mitochondrial precursor 99.9 3.1E-25 1.1E-29 262.0 30.6 313 576-946 21-407 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.7E-24 5.7E-29 258.0 35.8 333 575-947 39-498 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 2.5E-24 8.7E-29 250.9 33.2 322 575-945 40-415 (450)
11 1fch_A Peroxisomal targeting s 99.9 3.5E-25 1.2E-29 250.7 24.7 298 575-945 39-364 (368)
12 3cv0_A Peroxisome targeting si 99.9 1.7E-24 6E-29 239.6 25.5 272 610-946 23-321 (327)
13 2xpi_A Anaphase-promoting comp 99.9 2.3E-23 7.8E-28 252.3 37.2 334 575-948 214-587 (597)
14 4eqf_A PEX5-related protein; a 99.9 1.5E-24 5E-29 246.9 24.0 269 610-941 67-357 (365)
15 3hym_B Cell division cycle pro 99.9 1.1E-23 3.9E-28 233.3 27.7 285 575-928 36-322 (330)
16 2gw1_A Mitochondrial precursor 99.9 1.4E-23 4.8E-28 247.8 27.5 320 577-948 55-486 (514)
17 2xpi_A Anaphase-promoting comp 99.9 6.1E-23 2.1E-27 248.5 31.3 346 576-943 99-507 (597)
18 1fch_A Peroxisomal targeting s 99.9 1.5E-23 5.2E-28 237.2 24.2 282 616-945 33-319 (368)
19 4g1t_A Interferon-induced prot 99.9 2E-22 6.9E-27 237.0 31.6 287 609-946 52-369 (472)
20 4g1t_A Interferon-induced prot 99.9 3.2E-23 1.1E-27 243.8 23.9 300 609-948 95-467 (472)
21 4eqf_A PEX5-related protein; a 99.9 8.9E-23 3E-27 232.1 25.6 266 628-946 47-316 (365)
22 3uq3_A Heat shock protein STI1 99.9 5.4E-22 1.8E-26 211.8 29.0 237 607-944 4-240 (258)
23 2h6f_A Protein farnesyltransfe 99.9 1.4E-22 4.6E-27 236.8 23.9 249 609-923 98-365 (382)
24 3sf4_A G-protein-signaling mod 99.9 3.6E-21 1.2E-25 219.6 34.0 293 609-944 10-340 (406)
25 4a1s_A PINS, partner of inscut 99.9 2.9E-21 9.9E-26 222.6 33.3 295 609-946 49-378 (411)
26 3u4t_A TPR repeat-containing p 99.9 5.9E-22 2E-26 214.8 25.6 244 609-948 4-258 (272)
27 3ro2_A PINS homolog, G-protein 99.9 4.3E-21 1.5E-25 211.2 31.2 291 610-943 7-335 (338)
28 2h6f_A Protein farnesyltransfe 99.9 2.3E-22 7.7E-27 234.9 18.6 249 634-948 89-356 (382)
29 2pl2_A Hypothetical conserved 99.9 6.1E-21 2.1E-25 203.8 22.8 197 608-938 5-212 (217)
30 3cv0_A Peroxisome targeting si 99.9 7.8E-21 2.7E-25 210.2 23.3 271 577-910 37-319 (327)
31 3sf4_A G-protein-signaling mod 99.9 1.9E-20 6.6E-25 213.5 26.1 311 575-937 23-373 (406)
32 3mkr_A Coatomer subunit epsilo 99.9 1.9E-20 6.6E-25 210.0 22.8 262 615-947 6-271 (291)
33 1xnf_A Lipoprotein NLPI; TPR, 99.8 4.1E-20 1.4E-24 199.9 17.5 251 618-934 15-269 (275)
34 2q7f_A YRRB protein; TPR, prot 99.8 9.7E-20 3.3E-24 193.2 19.6 220 607-925 22-241 (243)
35 2pzi_A Probable serine/threoni 99.8 5E-20 1.7E-24 230.5 18.5 247 709-1012 402-659 (681)
36 3vtx_A MAMA; tetratricopeptide 99.8 5.4E-19 1.8E-23 181.4 20.2 174 730-946 3-176 (184)
37 1ouv_A Conserved hypothetical 99.8 4.7E-18 1.6E-22 185.9 28.4 229 608-947 6-258 (273)
38 3uq3_A Heat shock protein STI1 99.8 1.6E-18 5.6E-23 184.7 24.0 207 608-921 38-257 (258)
39 2xm6_A Protein corresponding t 99.8 4.7E-17 1.6E-21 194.4 39.2 327 590-948 57-443 (490)
40 3ro2_A PINS homolog, G-protein 99.8 1E-17 3.4E-22 184.2 28.6 258 643-945 6-297 (338)
41 4a1s_A PINS, partner of inscut 99.8 3E-18 1E-22 197.4 25.3 261 639-944 45-336 (411)
42 2vq2_A PILW, putative fimbrial 99.8 1.5E-17 5.1E-22 173.5 27.7 209 608-947 8-218 (225)
43 3mkr_A Coatomer subunit epsilo 99.8 5.5E-18 1.9E-22 190.0 26.0 245 611-934 37-288 (291)
44 3vtx_A MAMA; tetratricopeptide 99.8 5.4E-18 1.8E-22 173.9 23.6 171 608-911 5-175 (184)
45 2ho1_A Type 4 fimbrial biogene 99.8 4.3E-18 1.5E-22 182.5 23.0 209 608-947 37-245 (252)
46 4abn_A Tetratricopeptide repea 99.8 8.1E-19 2.8E-23 210.1 18.9 216 622-937 82-318 (474)
47 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.5E-17 8.7E-22 177.9 28.5 249 577-900 21-269 (275)
48 3u4t_A TPR repeat-containing p 99.8 1.9E-18 6.3E-23 187.2 19.4 240 576-924 18-268 (272)
49 2ho1_A Type 4 fimbrial biogene 99.8 3.7E-17 1.3E-21 175.2 28.3 197 589-916 50-248 (252)
50 2q7f_A YRRB protein; TPR, prot 99.8 2.9E-18 9.8E-23 181.8 18.9 197 709-948 34-230 (243)
51 3ulq_A Response regulator aspa 99.8 4.3E-18 1.5E-22 196.0 21.8 259 609-944 104-372 (383)
52 3nf1_A KLC 1, kinesin light ch 99.8 6.5E-18 2.2E-22 185.3 21.9 260 610-943 29-310 (311)
53 4i17_A Hypothetical protein; T 99.8 2.8E-17 9.5E-22 174.8 25.5 103 607-765 6-109 (228)
54 2pl2_A Hypothetical conserved 99.8 3.5E-18 1.2E-22 182.4 18.3 175 730-948 3-188 (217)
55 1hz4_A MALT regulatory protein 99.8 1.2E-16 4.1E-21 182.6 32.0 292 609-943 15-325 (373)
56 2xm6_A Protein corresponding t 99.8 5.9E-16 2E-20 184.9 39.4 286 597-939 28-359 (490)
57 4gyw_A UDP-N-acetylglucosamine 99.8 3.6E-18 1.2E-22 214.6 19.5 179 727-948 4-182 (723)
58 3qky_A Outer membrane assembly 99.8 2.5E-17 8.6E-22 179.3 23.8 217 605-931 12-252 (261)
59 2ooe_A Cleavage stimulation fa 99.7 2.3E-16 7.9E-21 190.3 30.3 331 586-950 4-430 (530)
60 2ond_A Cleavage stimulation fa 99.7 6.7E-17 2.3E-21 181.4 23.7 238 625-946 33-276 (308)
61 4abn_A Tetratricopeptide repea 99.7 5.6E-17 1.9E-21 194.1 23.9 193 712-948 82-295 (474)
62 3q15_A PSP28, response regulat 99.7 5.5E-17 1.9E-21 186.9 22.2 258 610-945 103-370 (378)
63 4gyw_A UDP-N-acetylglucosamine 99.7 4.1E-17 1.4E-21 205.0 22.4 173 605-910 6-178 (723)
64 2ooe_A Cleavage stimulation fa 99.7 3E-16 1E-20 189.3 28.4 188 715-944 255-458 (530)
65 4i17_A Hypothetical protein; T 99.7 6.8E-17 2.3E-21 171.8 19.1 189 711-947 20-216 (228)
66 1qqe_A Vesicular transport pro 99.7 5.4E-16 1.9E-20 173.0 20.9 188 732-946 77-275 (292)
67 1ouv_A Conserved hypothetical 99.7 5E-15 1.7E-19 161.7 27.4 217 591-916 21-261 (273)
68 2vq2_A PILW, putative fimbrial 99.7 1.2E-15 4E-20 159.1 20.2 179 727-946 3-183 (225)
69 3ulq_A Response regulator aspa 99.7 5.9E-15 2E-19 169.8 28.0 284 611-937 15-332 (383)
70 3qky_A Outer membrane assembly 99.7 1.2E-15 4.2E-20 165.9 20.8 188 725-946 8-230 (261)
71 3e4b_A ALGK; tetratricopeptide 99.7 5.4E-16 1.9E-20 184.5 17.5 286 592-939 19-350 (452)
72 1qqe_A Vesicular transport pro 99.7 2.7E-15 9.2E-20 167.3 21.6 231 615-921 44-284 (292)
73 2ond_A Cleavage stimulation fa 99.7 2.3E-15 8E-20 168.8 21.1 239 608-919 50-305 (308)
74 3dra_A Protein farnesyltransfe 99.7 1.5E-14 5.1E-19 163.8 26.5 248 615-948 39-296 (306)
75 3as5_A MAMA; tetratricopeptide 99.6 3E-15 1E-19 150.5 17.5 173 731-946 7-179 (186)
76 3edt_B KLC 2, kinesin light ch 99.6 4.7E-15 1.6E-19 159.6 20.2 206 710-940 13-281 (283)
77 2pzi_A Probable serine/threoni 99.6 1.6E-15 5.3E-20 189.9 17.4 174 619-892 402-583 (681)
78 2yhc_A BAMD, UPF0169 lipoprote 99.6 2.8E-14 9.6E-19 152.6 23.7 125 608-767 4-131 (225)
79 3urz_A Uncharacterized protein 99.6 1E-14 3.4E-19 154.5 19.7 186 609-910 5-190 (208)
80 3lz8_A Putative chaperone DNAJ 99.6 6.4E-17 2.2E-21 184.0 2.6 136 984-1147 28-168 (329)
81 3q15_A PSP28, response regulat 99.6 1.6E-13 5.3E-18 158.0 29.9 204 707-936 110-328 (378)
82 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.5E-14 5E-19 154.8 19.8 68 880-947 150-220 (225)
83 1hz4_A MALT regulatory protein 99.6 2.2E-13 7.5E-18 155.4 29.0 284 610-942 55-351 (373)
84 3urz_A Uncharacterized protein 99.6 8.1E-15 2.8E-19 155.2 15.7 185 732-944 4-190 (208)
85 2ifu_A Gamma-SNAP; membrane fu 99.6 1.3E-14 4.6E-19 162.9 18.3 192 711-945 29-228 (307)
86 3nf1_A KLC 1, kinesin light ch 99.6 5.4E-14 1.8E-18 154.0 22.0 237 592-909 43-310 (311)
87 2ifu_A Gamma-SNAP; membrane fu 99.6 2E-14 7E-19 161.4 18.7 235 620-929 3-250 (307)
88 4gco_A Protein STI-1; structur 99.6 1.2E-14 4.1E-19 142.3 14.4 111 834-948 8-118 (126)
89 3e4b_A ALGK; tetratricopeptide 99.6 1.9E-14 6.6E-19 171.1 19.0 288 593-941 55-388 (452)
90 3as5_A MAMA; tetratricopeptide 99.6 5.6E-14 1.9E-18 141.2 18.8 164 609-819 9-172 (186)
91 3edt_B KLC 2, kinesin light ch 99.6 2.1E-14 7E-19 154.5 16.2 138 608-764 43-201 (283)
92 4ga2_A E3 SUMO-protein ligase 99.6 4.5E-15 1.5E-19 149.3 10.3 134 797-948 3-137 (150)
93 1xi4_A Clathrin heavy chain; a 99.6 8.1E-13 2.8E-17 170.1 33.0 289 612-948 989-1317(1630)
94 4ga2_A E3 SUMO-protein ligase 99.6 4.9E-15 1.7E-19 149.1 9.8 147 737-926 2-149 (150)
95 3qou_A Protein YBBN; thioredox 99.6 7.1E-14 2.4E-18 155.9 19.0 170 728-940 113-284 (287)
96 2l6l_A DNAJ homolog subfamily 99.6 2.6E-15 8.7E-20 153.5 6.6 139 983-1160 9-148 (155)
97 1xi4_A Clathrin heavy chain; a 99.5 9E-13 3.1E-17 169.7 30.3 265 605-937 1102-1381(1630)
98 2r5s_A Uncharacterized protein 99.5 2.8E-14 9.7E-19 146.4 12.2 164 609-817 7-170 (176)
99 3dss_A Geranylgeranyl transfer 99.5 2.7E-12 9.2E-17 146.5 28.2 252 614-948 35-312 (331)
100 3qou_A Protein YBBN; thioredox 99.5 1.6E-13 5.5E-18 153.0 17.7 168 605-817 114-281 (287)
101 2yua_A Williams-beuren syndrom 99.5 1.5E-14 5.3E-19 136.6 7.0 72 983-1074 16-87 (99)
102 2r5s_A Uncharacterized protein 99.5 5.8E-14 2E-18 144.1 11.4 164 733-940 7-173 (176)
103 2vsy_A XCC0866; transferase, g 99.5 3.5E-13 1.2E-17 164.1 20.0 160 711-947 2-164 (568)
104 3dra_A Protein farnesyltransfe 99.5 1.6E-12 5.4E-17 147.2 23.5 151 595-767 52-221 (306)
105 2ctr_A DNAJ homolog subfamily 99.5 3.1E-14 1.1E-18 131.6 7.4 69 983-1072 6-74 (88)
106 4f3v_A ESX-1 secretion system 99.5 4E-13 1.4E-17 149.7 16.8 211 710-943 18-240 (282)
107 3gyz_A Chaperone protein IPGC; 99.5 9.2E-14 3.1E-18 141.1 10.6 109 832-944 29-137 (151)
108 2hr2_A Hypothetical protein; a 99.5 4.2E-13 1.5E-17 137.0 15.5 113 836-948 8-139 (159)
109 3rkv_A Putative peptidylprolyl 99.5 6E-13 2E-17 134.3 16.1 111 836-946 8-132 (162)
110 1p5q_A FKBP52, FK506-binding p 99.5 5.2E-15 1.8E-19 169.2 0.8 150 792-945 148-299 (336)
111 2qfc_A PLCR protein; TPR, HTH, 99.5 1.7E-12 5.8E-17 144.2 20.5 188 729-943 72-269 (293)
112 4gco_A Protein STI-1; structur 99.5 7.5E-13 2.6E-17 129.4 15.5 117 604-742 9-125 (126)
113 1wjz_A 1700030A21RIK protein; 99.4 5.5E-14 1.9E-18 131.4 5.9 75 983-1071 15-89 (94)
114 2ej7_A HCG3 gene; HCG3 protein 99.4 8.8E-14 3E-18 126.7 7.0 70 983-1071 8-77 (82)
115 2dmx_A DNAJ homolog subfamily 99.4 4.4E-14 1.5E-18 131.6 5.0 70 983-1071 8-77 (92)
116 2vsy_A XCC0866; transferase, g 99.4 9.7E-13 3.3E-17 160.1 18.0 165 621-918 2-169 (568)
117 1hdj_A Human HSP40, HDJ-1; mol 99.4 8.1E-14 2.8E-18 125.5 6.2 67 984-1071 3-69 (77)
118 2dn9_A DNAJ homolog subfamily 99.4 6.7E-14 2.3E-18 126.6 5.2 69 983-1071 6-74 (79)
119 4gcn_A Protein STI-1; structur 99.4 9E-13 3.1E-17 128.8 13.7 103 837-943 6-115 (127)
120 2ctp_A DNAJ homolog subfamily 99.4 1E-13 3.5E-18 125.1 6.0 68 983-1071 6-73 (78)
121 3upv_A Heat shock protein STI1 99.4 2.4E-12 8E-17 123.9 15.8 104 838-945 3-106 (126)
122 3sz7_A HSC70 cochaperone (SGT) 99.4 2.1E-12 7.2E-17 130.5 16.0 110 835-948 7-116 (164)
123 2och_A Hypothetical protein DN 99.4 8.3E-14 2.8E-18 124.1 4.9 66 983-1071 7-72 (73)
124 3dss_A Geranylgeranyl transfer 99.4 8.8E-12 3E-16 142.3 22.8 199 703-944 34-271 (331)
125 2o37_A Protein SIS1; HSP40, J- 99.4 1.1E-13 3.7E-18 129.0 5.7 66 984-1072 8-73 (92)
126 2vgx_A Chaperone SYCD; alterna 99.4 1.5E-12 5E-17 130.8 14.3 109 834-946 16-124 (148)
127 2c2l_A CHIP, carboxy terminus 99.4 2.5E-12 8.5E-17 143.0 17.4 194 608-939 4-198 (281)
128 4f3v_A ESX-1 secretion system 99.4 1.1E-12 3.6E-17 146.3 14.3 229 611-917 10-247 (282)
129 2cug_A Mkiaa0962 protein; DNAJ 99.4 1.3E-13 4.3E-18 127.5 5.5 68 983-1071 16-83 (88)
130 3u3w_A Transcriptional activat 99.4 6E-12 2.1E-16 139.8 20.1 183 735-944 78-270 (293)
131 2lgw_A DNAJ homolog subfamily 99.4 1.2E-13 4.2E-18 130.3 5.2 69 984-1071 2-70 (99)
132 3q7a_A Farnesyltransferase alp 99.4 1.1E-11 3.7E-16 142.3 22.2 241 614-945 60-337 (349)
133 2ctq_A DNAJ homolog subfamily 99.4 1.5E-13 5.1E-18 132.8 5.6 69 983-1071 19-87 (112)
134 1bq0_A DNAJ, HSP40; chaperone, 99.4 9.4E-14 3.2E-18 132.2 3.4 69 984-1072 3-71 (103)
135 3rjv_A Putative SEL1 repeat pr 99.4 7.3E-12 2.5E-16 133.1 18.3 176 715-941 3-198 (212)
136 2xcb_A PCRH, regulatory protei 99.4 6.8E-12 2.3E-16 124.1 16.6 110 833-946 12-121 (142)
137 2fo7_A Synthetic consensus TPR 99.4 2.1E-11 7.2E-16 115.2 19.2 134 609-764 2-135 (136)
138 2ctw_A DNAJ homolog subfamily 99.4 3E-13 1E-17 129.9 6.1 70 983-1072 16-85 (109)
139 1b89_A Protein (clathrin heavy 99.4 4.2E-13 1.4E-17 157.6 8.4 262 607-936 31-307 (449)
140 2fo7_A Synthetic consensus TPR 99.4 1.1E-11 3.6E-16 117.3 15.7 132 794-943 4-135 (136)
141 1hh8_A P67PHOX, NCF-2, neutrop 99.4 6.2E-12 2.1E-16 131.3 14.9 130 794-944 9-154 (213)
142 3gyz_A Chaperone protein IPGC; 99.3 7E-12 2.4E-16 127.2 14.2 99 610-764 38-136 (151)
143 3u3w_A Transcriptional activat 99.3 9.3E-11 3.2E-15 130.2 23.6 172 709-907 86-267 (293)
144 1dce_A Protein (RAB geranylger 99.3 1.2E-12 4E-17 160.4 8.3 189 712-943 43-270 (567)
145 2qsa_A DNAJ homolog DNJ-2; J-d 99.3 5.3E-13 1.8E-17 128.3 4.0 72 983-1071 14-86 (109)
146 3q49_B STIP1 homology and U bo 99.3 2.8E-11 9.7E-16 117.0 16.1 103 838-944 8-110 (137)
147 3mv2_B Coatomer subunit epsilo 99.3 1.8E-11 6.3E-16 138.0 16.6 253 616-946 21-288 (310)
148 1a17_A Serine/threonine protei 99.3 3.8E-11 1.3E-15 119.3 17.1 134 792-943 14-149 (166)
149 2qfc_A PLCR protein; TPR, HTH, 99.3 1.8E-10 6.3E-15 127.8 24.3 172 709-907 86-267 (293)
150 2vgx_A Chaperone SYCD; alterna 99.3 5.5E-12 1.9E-16 126.7 10.6 120 719-915 8-127 (148)
151 1a17_A Serine/threonine protei 99.3 1.2E-10 4.1E-15 115.6 18.9 135 608-764 13-149 (166)
152 1hxi_A PEX5, peroxisome target 99.3 1.3E-11 4.6E-16 119.5 11.5 101 841-945 19-119 (121)
153 2e2e_A Formate-dependent nitri 99.3 9.6E-12 3.3E-16 126.7 10.6 128 801-946 20-150 (177)
154 1p5q_A FKBP52, FK506-binding p 99.3 7.9E-11 2.7E-15 134.4 19.3 133 607-761 146-294 (336)
155 2xcb_A PCRH, regulatory protei 99.3 1.4E-11 4.8E-16 121.8 11.4 129 719-924 5-133 (142)
156 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 6.8E-12 2.3E-16 149.5 10.3 166 711-938 247-413 (457)
157 2fbn_A 70 kDa peptidylprolyl i 99.3 1.6E-11 5.6E-16 127.9 11.9 136 799-948 12-159 (198)
158 2hr2_A Hypothetical protein; a 99.3 5E-11 1.7E-15 121.8 14.5 113 607-768 10-138 (159)
159 1b89_A Protein (clathrin heavy 99.3 4.1E-12 1.4E-16 149.3 7.3 260 617-942 12-274 (449)
160 4b4t_Q 26S proteasome regulato 99.3 5E-11 1.7E-15 138.2 16.4 220 610-906 6-245 (434)
161 3gw4_A Uncharacterized protein 99.3 8.3E-11 2.9E-15 121.0 16.3 171 742-945 2-181 (203)
162 1hh8_A P67PHOX, NCF-2, neutrop 99.2 9.3E-11 3.2E-15 122.3 16.9 133 608-765 6-154 (213)
163 4b4t_Q 26S proteasome regulato 99.2 1.2E-10 4E-15 135.0 19.2 208 710-944 16-249 (434)
164 3upv_A Heat shock protein STI1 99.2 1.6E-10 5.4E-15 111.0 16.9 116 608-745 4-125 (126)
165 4gcn_A Protein STI-1; structur 99.2 8E-11 2.7E-15 114.9 14.8 108 609-731 9-116 (127)
166 2ys8_A RAB-related GTP-binding 99.2 4.1E-12 1.4E-16 117.8 5.3 61 984-1065 27-87 (90)
167 3gw4_A Uncharacterized protein 99.2 3.9E-10 1.3E-14 116.0 20.1 172 710-908 4-178 (203)
168 3hho_A CO-chaperone protein HS 99.2 3.6E-12 1.2E-16 132.4 4.8 74 983-1071 3-78 (174)
169 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 8.7E-12 3E-16 148.6 8.5 114 835-948 264-388 (457)
170 1fpo_A HSC20, chaperone protei 99.2 3.9E-12 1.3E-16 131.7 4.7 72 985-1071 2-75 (171)
171 3ro3_A PINS homolog, G-protein 99.2 2.2E-10 7.5E-15 111.8 16.6 145 791-943 9-161 (164)
172 3rjv_A Putative SEL1 repeat pr 99.2 3.6E-10 1.2E-14 119.9 19.5 174 595-819 5-196 (212)
173 3q7a_A Farnesyltransferase alp 99.2 5.6E-10 1.9E-14 128.1 22.3 160 595-768 73-244 (349)
174 3apq_A DNAJ homolog subfamily 99.2 5.3E-12 1.8E-16 134.7 4.9 68 984-1071 2-69 (210)
175 1gh6_A Large T antigen; tumor 99.2 1.6E-12 5.6E-17 125.4 0.6 63 984-1070 8-72 (114)
176 2fbn_A 70 kDa peptidylprolyl i 99.2 1.1E-11 3.6E-16 129.3 6.7 167 711-938 17-184 (198)
177 2e2e_A Formate-dependent nitri 99.2 6.1E-11 2.1E-15 120.7 12.2 130 617-767 19-150 (177)
178 3bvo_A CO-chaperone protein HS 99.2 6.5E-12 2.2E-16 133.8 4.9 73 983-1070 42-116 (207)
179 2vyi_A SGTA protein; chaperone 99.2 4.2E-10 1.4E-14 106.1 16.7 120 607-748 11-130 (131)
180 2lni_A Stress-induced-phosphop 99.2 1.1E-10 3.9E-15 111.1 12.7 109 835-947 12-120 (133)
181 1dce_A Protein (RAB geranylger 99.2 3.9E-11 1.3E-15 147.0 11.3 208 617-909 37-270 (567)
182 1elw_A TPR1-domain of HOP; HOP 99.2 1.7E-10 5.8E-15 107.0 12.9 106 839-948 4-109 (118)
183 2vyi_A SGTA protein; chaperone 99.2 2.8E-10 9.5E-15 107.4 14.2 116 794-927 15-130 (131)
184 2lni_A Stress-induced-phosphop 99.2 2.1E-10 7.1E-15 109.2 13.2 117 792-926 17-133 (133)
185 2c2l_A CHIP, carboxy terminus 99.2 8.6E-11 2.9E-15 130.5 11.9 170 729-946 1-170 (281)
186 3rkv_A Putative peptidylprolyl 99.2 2E-10 6.9E-15 115.6 13.5 128 793-928 13-149 (162)
187 2dba_A Smooth muscle cell asso 99.2 1.7E-10 5.9E-15 112.2 12.6 109 836-948 25-136 (148)
188 2qwo_B Putative tyrosine-prote 99.2 8.5E-12 2.9E-16 115.4 3.0 59 984-1059 33-91 (92)
189 1ihg_A Cyclophilin 40; ppiase 99.2 2.5E-10 8.6E-15 132.4 15.9 111 838-948 222-344 (370)
190 1hxi_A PEX5, peroxisome target 99.2 2.2E-10 7.5E-15 110.9 12.9 99 611-765 20-118 (121)
191 3sz7_A HSC70 cochaperone (SGT) 99.2 2.1E-10 7.2E-15 115.7 13.2 112 793-922 13-124 (164)
192 1faf_A Large T antigen; J doma 99.1 1.1E-11 3.9E-16 111.9 3.1 61 984-1068 11-73 (79)
193 2pf4_E Small T antigen; PP2A, 99.1 7.7E-12 2.6E-16 128.8 2.0 64 984-1071 11-76 (174)
194 3ro3_A PINS homolog, G-protein 99.1 9.1E-10 3.1E-14 107.3 16.8 151 732-909 9-161 (164)
195 2xev_A YBGF; tetratricopeptide 99.1 4.9E-10 1.7E-14 107.1 14.4 104 842-946 5-111 (129)
196 1iur_A KIAA0730 protein; DNAJ 99.1 2E-11 6.8E-16 112.5 4.2 63 984-1065 16-78 (88)
197 1n4c_A Auxilin; four helix bun 99.1 1.3E-11 4.5E-16 127.8 3.0 66 984-1066 117-182 (182)
198 4e6h_A MRNA 3'-END-processing 99.1 1.6E-08 5.4E-13 126.1 31.3 198 717-942 328-535 (679)
199 2if4_A ATFKBP42; FKBP-like, al 99.1 3.1E-11 1.1E-15 138.0 6.1 156 731-946 178-334 (338)
200 1zu2_A Mitochondrial import re 99.1 1.3E-10 4.6E-15 118.4 9.6 94 850-947 13-127 (158)
201 1elr_A TPR2A-domain of HOP; HO 99.1 6.7E-10 2.3E-14 104.9 13.9 102 838-943 3-111 (131)
202 3k9i_A BH0479 protein; putativ 99.1 1.9E-10 6.3E-15 109.8 9.2 96 851-947 2-97 (117)
203 3ag7_A Putative uncharacterize 99.1 2.6E-11 9E-16 115.6 3.2 64 984-1061 41-104 (106)
204 1na0_A Designed protein CTPR3; 99.1 3.4E-09 1.2E-13 98.9 17.4 117 608-746 9-125 (125)
205 2kck_A TPR repeat; tetratricop 99.1 1.3E-10 4.6E-15 106.9 7.5 102 839-944 6-110 (112)
206 2if4_A ATFKBP42; FKBP-like, al 99.1 1.2E-10 4.2E-15 133.0 8.5 109 836-948 176-301 (338)
207 1ihg_A Cyclophilin 40; ppiase 99.1 1.1E-09 3.8E-14 127.0 16.3 136 794-933 226-363 (370)
208 1na0_A Designed protein CTPR3; 99.1 2.2E-09 7.4E-14 100.3 14.9 112 795-924 13-124 (125)
209 1elw_A TPR1-domain of HOP; HOP 99.1 4.4E-09 1.5E-13 97.3 16.8 113 608-742 4-116 (118)
210 3q49_B STIP1 homology and U bo 99.1 1.6E-09 5.6E-14 104.5 14.2 117 607-745 8-129 (137)
211 1wao_1 Serine/threonine protei 99.0 9.4E-11 3.2E-15 140.5 5.4 137 609-767 7-156 (477)
212 3uo3_A J-type CO-chaperone JAC 99.0 5.1E-11 1.8E-15 124.3 1.9 66 982-1070 9-81 (181)
213 1wao_1 Serine/threonine protei 99.0 8E-11 2.7E-15 141.2 2.7 135 795-947 10-157 (477)
214 2guz_A Mitochondrial import in 99.0 1.4E-10 4.7E-15 102.7 3.2 57 984-1064 14-71 (71)
215 2xev_A YBGF; tetratricopeptide 99.0 1E-08 3.4E-13 97.8 16.4 118 610-746 4-124 (129)
216 2kck_A TPR repeat; tetratricop 99.0 1.8E-09 6.1E-14 99.2 9.6 103 609-765 7-110 (112)
217 2dba_A Smooth muscle cell asso 99.0 5.1E-09 1.7E-13 101.6 13.2 115 793-922 30-144 (148)
218 1elr_A TPR2A-domain of HOP; HO 98.9 6.8E-09 2.3E-13 97.9 13.3 118 794-926 7-127 (131)
219 2l6j_A TPR repeat-containing p 98.9 5.1E-10 1.7E-14 103.8 5.0 95 838-936 3-103 (111)
220 2kat_A Uncharacterized protein 98.9 7.3E-09 2.5E-13 97.9 13.1 87 856-946 2-88 (115)
221 1zu2_A Mitochondrial import re 98.9 2.5E-09 8.6E-14 109.0 9.4 100 620-765 14-124 (158)
222 3mv2_B Coatomer subunit epsilo 98.9 2.8E-08 9.6E-13 112.1 18.6 232 611-915 48-291 (310)
223 3k9i_A BH0479 protein; putativ 98.9 4.1E-09 1.4E-13 100.4 9.1 98 803-915 2-99 (117)
224 3apo_A DNAJ homolog subfamily 98.9 2.3E-10 8E-15 145.2 -0.2 68 984-1071 21-88 (780)
225 4e6h_A MRNA 3'-END-processing 98.8 1.1E-07 3.6E-12 118.7 21.3 197 719-945 365-575 (679)
226 3n71_A Histone lysine methyltr 98.8 5.8E-08 2E-12 116.7 16.0 141 798-944 316-468 (490)
227 1na3_A Designed protein CTPR2; 98.8 4.6E-08 1.6E-12 87.2 11.2 84 838-925 8-91 (91)
228 2kc7_A BFR218_protein; tetratr 98.7 2.2E-08 7.5E-13 91.6 8.1 91 843-945 4-95 (99)
229 3ma5_A Tetratricopeptide repea 98.7 4.7E-08 1.6E-12 90.8 9.1 74 873-946 3-76 (100)
230 2uy1_A Cleavage stimulation fa 98.7 2.5E-05 8.5E-10 93.9 34.5 307 591-937 29-380 (493)
231 3n71_A Histone lysine methyltr 98.6 3.6E-07 1.2E-11 109.8 17.6 130 839-973 309-450 (490)
232 2l6j_A TPR repeat-containing p 98.6 2.3E-07 7.7E-12 85.7 12.1 68 608-675 4-71 (111)
233 1na3_A Designed protein CTPR2; 98.6 3E-07 1E-11 81.8 12.4 76 608-683 9-84 (91)
234 2kat_A Uncharacterized protein 98.6 3.7E-07 1.3E-11 86.0 12.9 82 580-674 4-85 (115)
235 2kc7_A BFR218_protein; tetratr 98.6 2.9E-07 1E-11 84.0 11.4 67 612-678 4-71 (99)
236 3ma5_A Tetratricopeptide repea 98.6 1.6E-07 5.3E-12 87.3 9.6 70 605-674 4-73 (100)
237 3qwp_A SET and MYND domain-con 98.4 2.1E-06 7.3E-11 101.4 16.1 105 842-946 290-406 (429)
238 3qww_A SET and MYND domain-con 98.3 1.8E-06 6.3E-11 102.1 12.1 101 846-946 305-417 (433)
239 1klx_A Cysteine rich protein B 98.3 3.1E-06 1.1E-10 83.7 11.0 110 805-940 9-126 (138)
240 3u64_A Protein TP_0956; tetrat 98.3 4E-05 1.4E-09 85.0 20.2 86 855-944 179-273 (301)
241 3ly7_A Transcriptional activat 98.2 1.1E-05 3.7E-10 92.8 15.7 135 608-765 196-343 (372)
242 3bee_A Putative YFRE protein; 98.2 4.2E-06 1.4E-10 77.6 9.0 71 873-943 2-75 (93)
243 3qwp_A SET and MYND domain-con 98.2 1.5E-05 5E-10 94.3 15.1 120 800-925 296-427 (429)
244 3ly7_A Transcriptional activat 98.1 2.4E-05 8.2E-10 89.9 15.8 70 874-944 274-343 (372)
245 3bee_A Putative YFRE protein; 98.1 1.2E-05 4E-10 74.6 10.9 67 608-674 6-75 (93)
246 1klx_A Cysteine rich protein B 98.1 1.5E-05 5.3E-10 78.6 11.7 120 746-918 9-136 (138)
247 2v5f_A Prolyl 4-hydroxylase su 98.1 2.1E-05 7.1E-10 73.9 11.2 79 840-918 6-87 (104)
248 2uy1_A Cleavage stimulation fa 98.1 0.00034 1.2E-08 84.0 24.5 107 839-947 213-356 (493)
249 3qww_A SET and MYND domain-con 98.0 3.4E-05 1.2E-09 91.3 13.3 105 803-913 310-423 (433)
250 1pc2_A Mitochondria fission pr 97.9 4.6E-05 1.6E-09 77.0 11.6 89 855-947 14-107 (152)
251 2v5f_A Prolyl 4-hydroxylase su 97.8 0.00016 5.6E-09 67.6 12.0 68 611-678 8-82 (104)
252 3u64_A Protein TP_0956; tetrat 97.8 0.00077 2.6E-08 74.8 18.3 86 713-823 178-272 (301)
253 1pc2_A Mitochondria fission pr 97.6 0.0002 6.9E-09 72.3 10.6 74 608-681 32-110 (152)
254 2guz_B Mitochondrial import in 97.4 0.00011 3.8E-09 63.4 4.5 50 985-1058 5-57 (65)
255 4g26_A Pentatricopeptide repea 97.0 0.019 6.6E-07 68.9 19.9 166 734-940 28-204 (501)
256 1nzn_A CGI-135 protein, fissio 96.7 0.0061 2.1E-07 59.5 10.1 90 854-947 16-110 (126)
257 4g26_A Pentatricopeptide repea 96.7 0.06 2.1E-06 64.6 20.6 160 611-818 29-202 (501)
258 3ffl_A Anaphase-promoting comp 96.7 0.0059 2E-07 62.2 9.6 98 839-936 20-147 (167)
259 3txn_A 26S proteasome regulato 96.6 0.09 3.1E-06 61.1 20.7 208 643-893 20-236 (394)
260 3ffl_A Anaphase-promoting comp 96.5 0.0077 2.6E-07 61.4 9.5 120 608-758 20-148 (167)
261 1nzn_A CGI-135 protein, fissio 96.3 0.016 5.4E-07 56.6 9.8 74 608-681 35-113 (126)
262 4h7y_A Dual specificity protei 96.0 0.047 1.6E-06 54.7 11.8 115 636-765 7-127 (161)
263 2ctt_A DNAJ homolog subfamily 95.9 0.0014 4.8E-08 61.9 0.1 38 1119-1156 1-39 (104)
264 4h7y_A Dual specificity protei 95.8 0.063 2.2E-06 53.8 11.4 105 841-946 15-129 (161)
265 3mkq_A Coatomer beta'-subunit; 95.7 0.3 1E-05 60.7 20.5 99 617-758 608-707 (814)
266 4b4t_P 26S proteasome regulato 95.7 2.2 7.6E-05 50.2 26.5 204 622-868 30-247 (445)
267 3o48_A Mitochondria fission 1 95.5 0.088 3E-06 51.7 10.9 72 611-682 43-118 (134)
268 1zbp_A Hypothetical protein VP 95.4 0.19 6.5E-06 55.1 14.5 131 616-767 5-135 (273)
269 3o48_A Mitochondria fission 1 95.2 0.12 3.9E-06 50.8 10.9 80 839-922 40-123 (134)
270 1y8m_A FIS1; mitochondria, unk 95.1 0.16 5.6E-06 50.4 11.6 72 609-680 40-115 (144)
271 1y8m_A FIS1; mitochondria, unk 94.9 0.14 4.9E-06 50.8 10.7 79 839-920 39-120 (144)
272 3txn_A 26S proteasome regulato 94.8 0.74 2.5E-05 53.4 18.3 124 795-926 103-235 (394)
273 2ff4_A Probable regulatory pro 94.7 0.17 5.8E-06 58.6 12.6 107 840-946 116-240 (388)
274 3mkq_A Coatomer beta'-subunit; 94.5 0.5 1.7E-05 58.7 17.1 44 611-665 632-675 (814)
275 4gns_B Protein CSD3, chitin bi 94.2 0.23 7.8E-06 62.3 12.8 61 877-937 337-397 (754)
276 4b4t_P 26S proteasome regulato 93.8 0.92 3.1E-05 53.5 16.6 103 795-905 141-246 (445)
277 3kae_A CDC27, possible protein 93.8 3 0.0001 42.5 17.5 200 711-943 15-240 (242)
278 2ff4_A Probable regulatory pro 93.7 0.85 2.9E-05 52.7 15.7 113 645-761 118-234 (388)
279 4fhn_B Nucleoporin NUP120; pro 93.2 3.4 0.00012 54.4 22.2 54 613-670 817-870 (1139)
280 3mkq_B Coatomer subunit alpha; 92.3 6.1 0.00021 40.6 17.7 48 616-668 13-60 (177)
281 3kae_A CDC27, possible protein 91.5 11 0.00036 38.6 17.7 153 605-764 59-240 (242)
282 1qsa_A Protein (soluble lytic 91.4 23 0.0008 43.3 24.9 71 597-671 56-131 (618)
283 4gns_B Protein CSD3, chitin bi 91.3 0.42 1.5E-05 59.9 9.4 61 608-668 337-397 (754)
284 1zbp_A Hypothetical protein VP 91.2 1.8 6.1E-05 47.5 13.0 57 709-765 8-64 (273)
285 1ya0_A SMG-7 transcript varian 88.6 7 0.00024 46.7 16.6 78 610-687 154-231 (497)
286 4b4t_S RPN3, 26S proteasome re 87.7 2.8 9.6E-05 50.1 12.2 195 710-929 148-359 (523)
287 1qsa_A Protein (soluble lytic 86.2 36 0.0012 41.6 21.3 124 611-762 9-132 (618)
288 1ya0_A SMG-7 transcript varian 85.6 2 6.8E-05 51.4 9.5 80 841-924 154-233 (497)
289 2wpv_A GET4, UPF0363 protein Y 85.5 11 0.00037 42.3 14.8 27 909-935 132-158 (312)
290 3mkq_B Coatomer subunit alpha; 85.3 8.8 0.0003 39.4 12.9 43 711-758 18-60 (177)
291 4b4t_R RPN7, 26S proteasome re 85.3 2.2 7.7E-05 49.8 9.7 99 841-940 133-237 (429)
292 4b4t_S RPN3, 26S proteasome re 83.5 1.8 6.2E-05 51.7 7.8 139 617-766 145-304 (523)
293 3lpz_A GET4 (YOR164C homolog); 81.9 20 0.00067 40.5 15.1 27 908-934 133-159 (336)
294 4fhn_B Nucleoporin NUP120; pro 80.9 11 0.00037 49.6 14.6 132 794-926 845-986 (1139)
295 3spa_A Mtrpol, DNA-directed RN 79.6 9 0.00031 49.4 12.4 100 839-939 127-229 (1134)
296 4b4t_R RPN7, 26S proteasome re 78.1 7.8 0.00027 45.2 10.7 102 795-907 135-238 (429)
297 1o9d_A 14-3-3-like protein C; 75.4 80 0.0028 34.2 16.8 44 643-686 9-55 (260)
298 2br9_A 14-3-3E, 14-3-3 protein 74.2 77 0.0026 33.8 16.1 44 643-686 6-50 (234)
299 3mv2_A Coatomer subunit alpha; 72.4 66 0.0022 36.0 15.5 147 797-943 34-239 (325)
300 3mkr_B Coatomer subunit alpha; 72.3 81 0.0028 35.2 16.2 106 837-943 100-230 (320)
301 3pmq_A Decaheme cytochrome C M 70.8 0.72 2.5E-05 56.7 -0.7 43 1123-1165 168-214 (669)
302 3ubw_A 14-3-3E, 14-3-3 protein 69.2 1.3E+02 0.0045 32.5 18.4 45 642-686 31-76 (261)
303 3spa_A Mtrpol, DNA-directed RN 68.1 24 0.00081 45.7 12.0 100 794-906 130-230 (1134)
304 3lpz_A GET4 (YOR164C homolog); 65.6 1.8E+02 0.0061 32.7 26.3 130 794-925 139-296 (336)
305 1exk_A DNAJ protein; extended 62.0 2 6.9E-05 37.8 0.6 21 1136-1156 1-22 (79)
306 3iqu_A 14-3-3 protein sigma; s 61.2 1.7E+02 0.0059 31.2 15.5 66 735-817 126-202 (236)
307 4gq2_M Nucleoporin NUP120; bet 58.6 75 0.0026 40.9 14.6 111 612-728 814-927 (950)
308 2npm_A 14-3-3 domain containin 56.8 2.2E+02 0.0075 30.8 18.3 46 609-654 29-78 (260)
309 2wpv_A GET4, UPF0363 protein Y 55.4 2.5E+02 0.0086 31.1 24.2 26 730-755 132-157 (312)
310 2qx5_A Nucleoporin NIC96; mRNA 52.7 2.3E+02 0.0078 34.9 16.7 30 914-944 539-570 (661)
311 2crb_A Nuclear receptor bindin 47.3 42 0.0014 30.7 6.5 36 911-946 15-50 (97)
312 2o8p_A 14-3-3 domain containin 43.6 3.2E+02 0.011 28.9 20.3 53 853-905 139-196 (227)
313 4gq2_M Nucleoporin NUP120; bet 43.1 1.5E+02 0.0053 38.0 13.8 24 794-817 843-866 (950)
314 1wy6_A Hypothetical protein ST 42.4 2.7E+02 0.0091 27.6 11.8 62 698-761 93-154 (172)
315 2cfu_A SDSA1; SDS-hydrolase, l 34.6 48 0.0016 40.8 6.9 51 608-658 449-499 (658)
316 1wy6_A Hypothetical protein ST 33.7 1.9E+02 0.0066 28.6 9.3 54 887-940 101-154 (172)
317 4ady_A RPN2, 26S proteasome re 32.8 9E+02 0.031 31.0 20.5 163 610-818 415-587 (963)
318 3t5v_B Nuclear mRNA export pro 31.7 3.3E+02 0.011 31.8 13.0 62 614-675 182-254 (455)
319 2crb_A Nuclear receptor bindin 31.5 57 0.002 29.8 4.9 26 610-635 17-42 (97)
320 3esl_A Checkpoint serine/threo 31.4 2.6E+02 0.009 29.1 10.7 68 872-940 75-144 (202)
321 2ra1_A Surface layer protein; 30.2 3.4E+02 0.012 30.9 11.9 36 911-946 173-208 (412)
322 3u84_A Menin; MLL, JUND, ledgf 29.2 1.6E+02 0.0056 33.9 9.1 76 707-817 269-344 (550)
323 2w2u_A Hypothetical P60 katani 28.2 2.2E+02 0.0076 25.2 8.3 32 915-946 23-54 (83)
324 4a5x_A MITD1, MIT domain-conta 28.2 3.2E+02 0.011 24.3 9.6 27 841-867 18-44 (86)
325 3uzd_A 14-3-3 protein gamma; s 26.9 6.1E+02 0.021 27.1 23.0 44 643-686 5-49 (248)
326 3t5v_B Nuclear mRNA export pro 26.3 1.1E+02 0.0036 36.1 7.5 28 913-940 222-249 (455)
327 3lvg_A Clathrin heavy chain 1; 26.0 0.0083 2.9E-07 70.5 -26.6 60 606-670 52-111 (624)
328 2dl1_A Spartin; SPG20, MIT, st 25.7 1.3E+02 0.0046 28.5 6.6 78 884-976 10-96 (116)
329 3rau_A Tyrosine-protein phosph 25.2 7.6E+02 0.026 27.7 14.5 33 913-945 254-286 (363)
330 2v6y_A AAA family ATPase, P60 24.9 2.3E+02 0.008 24.9 7.8 32 915-946 15-46 (83)
331 3t5x_A PCI domain-containing p 24.8 1E+02 0.0034 32.0 6.3 34 609-642 15-48 (203)
332 3re2_A Predicted protein; meni 24.8 2.3E+02 0.0079 32.2 9.2 74 709-817 249-322 (472)
333 4a5x_A MITD1, MIT domain-conta 24.7 2.9E+02 0.01 24.6 8.4 32 914-945 19-50 (86)
334 1wfd_A Hypothetical protein 15 23.4 2.1E+02 0.0071 25.9 7.3 20 846-865 22-41 (93)
335 1wfd_A Hypothetical protein 15 22.3 3.3E+02 0.011 24.5 8.4 32 915-946 19-50 (93)
336 3tvt_B PINS, partner of inscut 22.3 24 0.00083 27.3 0.6 22 15-36 4-27 (50)
337 2v6y_A AAA family ATPase, P60 22.0 1.2E+02 0.004 26.9 5.3 21 846-866 18-38 (83)
338 2w2u_A Hypothetical P60 katani 21.6 1.2E+02 0.004 27.0 5.1 27 841-867 21-47 (83)
339 2cpt_A SKD1 protein, vacuolar 21.4 3.2E+02 0.011 25.8 8.5 63 911-976 18-81 (117)
340 3mv2_A Coatomer subunit alpha; 21.2 8.8E+02 0.03 27.0 14.2 112 612-730 118-239 (325)
341 2rpa_A Katanin P60 ATPase-cont 20.6 3E+02 0.01 24.2 7.5 34 913-946 14-47 (78)
342 2rpa_A Katanin P60 ATPase-cont 20.3 3.4E+02 0.012 23.9 7.7 26 645-670 15-40 (78)
343 3lcz_A YCZA, inhibitor of trap 20.3 25 0.00086 28.8 0.4 13 1148-1160 25-38 (53)
344 2ijq_A Hypothetical protein; s 20.2 2.7E+02 0.0094 27.9 8.1 59 612-670 36-103 (161)
No 1
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=9.5e-39 Score=372.88 Aligned_cols=405 Identities=21% Similarity=0.285 Sum_probs=323.4
Q ss_pred CcchhHHHHHHHHHhch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 591 EPNLASAETIAAQEACE--KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668 (1166)
Q Consensus 591 ep~~A~a~~~aAIe~~e--~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekA 668 (1166)
++..|...+..+++..+ ..+|+.+|.+|+.+|++++|+..|+++++++|++..++..+|.+|..+|++++|+.+|+++
T Consensus 41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45556667777766544 5778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCch---hHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc
Q 039706 669 LQSGSDVC---VDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML 745 (1166)
Q Consensus 669 Lel~P~n~---~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l 745 (1166)
++++|.+. ..+..+..+ ......+..+.. ....|++++|+..|++++.+.|.+..++..+|.+|..+
T Consensus 121 ~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~a~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 121 LKSNPSENEEKEAQSQLIKS-------DEMQRLRSQALN---AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE 190 (450)
T ss_dssp HTSCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HhcCCCChhhHHHHHHHHHH-------HHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 99999865 333333222 111112222222 23479999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCch
Q 039706 746 RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKM 825 (1166)
Q Consensus 746 GdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~ 825 (1166)
|++++|+..|++++...|.+.. .+..+|.+|...|++++|+..|++++...+...
T Consensus 191 g~~~~A~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 245 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKNDNTE-------------------------AFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245 (450)
T ss_dssp TCGGGGHHHHHHHHHHHCSCHH-------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH
Confidence 9999999999999999886532 256799999999999999999999876554421
Q ss_pred hhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 039706 826 LESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905 (1166)
Q Consensus 826 le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALe 905 (1166)
. .............+..+|..+...|++++|+.+|++++.+.+........+|.++|.++..+|++++|+..|++++.
T Consensus 246 ~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 246 R--CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11111222334445667999999999999999999999988443223356899999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhhHHhhhhccCccc
Q 039706 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLD 985 (1166)
Q Consensus 906 ldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~~e~~~rk~~~~d 985 (1166)
++|+++.+|..+|.+|..+|++++|+..|++++++.|++.... ..+..++..++... ..+
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------------~~l~~~~~~~~~~~-------~~~ 383 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR-------------EGLEKAQRLLKQSQ-------KRD 383 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH-------------HHHHHHHHHHHHHH-------SCC
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH-------------HHHHHHHHHhhccc-------chh
Confidence 9999999999999999999999999999999999998876543 22333433333221 348
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchhcc
Q 039706 986 MYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKRSR 1065 (1166)
Q Consensus 986 yY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR~~ 1065 (1166)
+|.+||+.+.++..+++++|+++++++|||+.+. ++.++.++++|++|++||++|+||.+|+.
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~-----------------~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN-----------------EEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS-----------------HHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC-----------------chHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 9999999999999999999999999999999752 23357899999999999999999999999
Q ss_pred cchh
Q 039706 1066 YDLE 1069 (1166)
Q Consensus 1066 YD~~ 1069 (1166)
||.+
T Consensus 447 yd~g 450 (450)
T 2y4t_A 447 FDDG 450 (450)
T ss_dssp ----
T ss_pred ccCC
Confidence 9973
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.3e-28 Score=278.71 Aligned_cols=293 Identities=18% Similarity=0.098 Sum_probs=168.4
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
+++.|+..+.+.+..+|++..+.. .+|.+++..|++++|+..+++++..+|.+..+|..+|.+|...
T Consensus 14 ~~~~A~~~~~~~~~~~p~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQEPDNTGVLL-------------LLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHH-------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHH-------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 346667777777777777654443 3677777778888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHH
Q 039706 656 GEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLL 735 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al 735 (1166)
|++++|+..|++++.++|++...+..+..++. ..|++++|+..|+++++++|+...++
T Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----------------------~~g~~~~A~~~~~~al~~~p~~~~~~ 138 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALV----------------------AAGDMEGAVQAYVSALQYNPDLYCVR 138 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------------------HHSCSSHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHH----------------------HcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 88888888888888777775443333222222 23555555555555555555555555
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 039706 736 EMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALE 815 (1166)
Q Consensus 736 ~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~le 815 (1166)
..+|.++..+|++++|+..|++++...|.+.. .+..+|.+|...|++++|+..|+
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------------------~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAV-------------------------AWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH-------------------------HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-------------------------HHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555555555555555555543311 12335555555555555555555
Q ss_pred HHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH
Q 039706 816 RHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD 895 (1166)
Q Consensus 816 kAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee 895 (1166)
+++...+ .....+..+|.++...|++++|+..|++++.++ |.+..++.++|.+|..+|++++
T Consensus 194 ~al~~~p--------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 194 KAVTLDP--------------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS----PNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp HHHHHCT--------------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCC--------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cCCHHHHHHHHHHHHHcCCHHH
Confidence 5432221 123334444555555555555555555555554 4445555555555555555555
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 896 AIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 896 Ai~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|+..|+++++++|+++.++..+|.+|...|++++|+..|++++++.|.+.+
T Consensus 256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 306 (388)
T 1w3b_A 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306 (388)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH
Confidence 555555555555555555555555555555555555555555555554443
No 3
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=2e-27 Score=265.75 Aligned_cols=323 Identities=16% Similarity=0.221 Sum_probs=262.7
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
.++.|+..+.+++..+|++. .+++++|.+|+.+|++++|+..|+++++++|++..++..+|.+|..+
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~-------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 18 QLADALSQFHAAVDGDPDNY-------------IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCH-------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccH-------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 34556666666666665543 45677999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCC---CchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChH
Q 039706 656 GEIEDASKYFRMCLQSGS---DVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE 732 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P---~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~ 732 (1166)
|++++|+..|++++++.| .+...+..+.. .......+..+.. ....|++++|+..+++++...|.++
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~a~~---~~~~~~~~~A~~~~~~~~~~~~~~~ 154 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK-------ADEMQRLRSQALD---AFDGADYTAAITFLDKILEVCVWDA 154 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHH-------HHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHhCCCch
Confidence 999999999999999999 65443333222 2222222222222 3358999999999999999999999
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 039706 733 KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIA 812 (1166)
Q Consensus 733 ~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~ 812 (1166)
.++..+|.++..+|++++|+..+++++.+.|.+.. .+..+|.+|...|++++|+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------------------~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE-------------------------AFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHH-------------------------HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------------------------HHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999998876432 25679999999999999999
Q ss_pred HHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc
Q 039706 813 ALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH 892 (1166)
Q Consensus 813 ~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq 892 (1166)
.+++++...+.... ..........+.....+|..+...|++++|+..|++++...+........++..+|.+|..+|+
T Consensus 210 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 210 EVRECLKLDQDHKR--CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhCccchH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence 99998765544211 1112222233445567799999999999999999999998854333334668889999999999
Q ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 893 ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 893 ~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++++.|++.+.+
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999876543
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.2e-28 Score=279.85 Aligned_cols=298 Identities=15% Similarity=0.152 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+|+.+|.+|...|++++|+..|++++.++|++..+|..+|.+|...|++++|+..|+++++++|++...+..+..++.
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35677799999999999999999999999999999999999999999999999999999999999998777666666665
Q ss_pred HhhhHHhHHHHHHHHHH------------HHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQ------------LLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLC 755 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~------------~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~l 755 (1166)
.+++...+...+..+.. ...+...|++++|+..|++++.++|....++..+|.++...|++++|+..+
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555444443333211 111335777888888888888888888888888888888888888888888
Q ss_pred HHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccc
Q 039706 756 EQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGT 835 (1166)
Q Consensus 756 ekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~ 835 (1166)
++++.+.|++.. .+..+|.+|...|++++|+..|++++...+.
T Consensus 227 ~~al~~~p~~~~-------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------ 269 (388)
T 1w3b_A 227 LRALSLSPNHAV-------------------------VHGNLACVYYEQGLIDLAIDTYRRAIELQPH------------ 269 (388)
T ss_dssp HHHHHHCTTCHH-------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------------
T ss_pred HHHHhhCcCCHH-------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------
Confidence 888877765421 2456788888888888888888887554333
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
....+..+|.++...|++++|+.+|++++++. |.+..+|.++|.++..+|++++|+..|+++++++|++..++.
T Consensus 270 --~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 270 --FPDAYCNLANALKEKGSVAEAEDCYNTALRLC----PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp --CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 23456777888888888888888888888887 777888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 916 RRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 916 ~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
.+|.+|..+|++++|+..|++++++.|+..+..
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~ 376 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence 888888888888888888888888887766544
No 5
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=7.1e-25 Score=245.11 Aligned_cols=276 Identities=15% Similarity=0.110 Sum_probs=237.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
...++.+|.+++..|+|++|+..|++++..+|.+..+++.+|.+|..+|++++|+..|+++++++|++...+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------ 76 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ------ 76 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHH------
Confidence 45678899999999999999999999999999999999999999999999999999999999999986432211
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC---ChHHHHHHH------------HHHHHHccCHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS---YSEKLLEMK------------AEALFMLRKYEEVI 752 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P---~~~~al~~l------------A~~y~~lGdyeeAi 752 (1166)
.+.+ +...|++++|+..|++++.+.| .+..++..+ |.++...|++++|+
T Consensus 77 --------------l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 77 --------------RGHL--LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp --------------HHHH--HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------HHHH--HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 1111 1246999999999999999999 888888777 79999999999999
Q ss_pred HHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 753 QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 753 ~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
..+++++...|.+.. .+..+|.+|...|++++|+..+++++...+.
T Consensus 141 ~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------- 186 (359)
T 3ieg_A 141 TFLDKILEVCVWDAE-------------------------LRELRAECFIKEGEPRKAISDLKAASKLKSD--------- 186 (359)
T ss_dssp HHHHHHHHHCTTCHH-------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC---------
T ss_pred HHHHHHHHhCCCchH-------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------
Confidence 999999999886422 2467999999999999999999998654433
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHH------------HHHHHHHHhhchhHHHHHH
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFC------------NRAAAYKALRHITDAIADC 900 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~------------nlA~ay~~lGq~eeAi~~l 900 (1166)
....+..+|.++...|++++|+..|++++.+. |....++. .+|.++...|++++|+..+
T Consensus 187 -----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 187 -----NTEAFYKISTLYYQLGDHELSLSEVRECLKLD----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257 (359)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34567788999999999999999999999988 55444433 4588999999999999999
Q ss_pred HHHHHhCCChH----HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 901 NLAIALDGNYL----KAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 901 ekALeldP~~~----~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
++++.+.|++. .++..+|.+|..+|++++|+..|++++++.|.+...+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 309 (359)
T 3ieg_A 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309 (359)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHH
Confidence 99999999977 4567799999999999999999999999988776543
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=2.4e-25 Score=265.20 Aligned_cols=313 Identities=15% Similarity=0.045 Sum_probs=233.3
Q ss_pred CcchhHHHHHHHHHhch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 591 EPNLASAETIAAQEACE--KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668 (1166)
Q Consensus 591 ep~~A~a~~~aAIe~~e--~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekA 668 (1166)
+.+.|...+..++...| ..+|+++|.+|+.+|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+ +
T Consensus 40 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~ 118 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-V 118 (537)
T ss_dssp CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-H
T ss_pred cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-H
Confidence 45566677777766543 46678888888888888888888888888888888888888888888888888888885 6
Q ss_pred HHcCCCchhHHH-------HHHHHHHHhhhHHhH---------------H--------------------------HHHH
Q 039706 669 LQSGSDVCVDQK-------IAVEASDGLQKAQKV---------------S--------------------------ECMQ 700 (1166)
Q Consensus 669 Lel~P~n~~a~~-------~l~Ea~~~L~k~~~~---------------~--------------------------e~~~ 700 (1166)
+.+.|+...... ...++...+...... . .+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (537)
T 3fp2_A 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD 198 (537)
T ss_dssp HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHH
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHH
Confidence 766665432210 000111111110000 0 0000
Q ss_pred HHHHHHH------hhcCCCHHHHHHHHHHHHHhCCChHH-------HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 701 RSAQLLQ------NKTSNDAEIALGVIDEALFISSYSEK-------LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 701 ~a~~~l~------~~~~gd~eeALe~lekALel~P~~~~-------al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
.....+. ....+++++|+..|+++++..|.+.. ++..+|.++...|++++|+..+++++.+.|. ..
T Consensus 199 ~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 277 (537)
T 3fp2_A 199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PN 277 (537)
T ss_dssp HHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-ch
Confidence 0000000 01135899999999999999999755 5778888999999999999999999999774 11
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
.+..+|.+|...|++++|+..+++++...+ .....+..+|.
T Consensus 278 -------------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~l~~ 318 (537)
T 3fp2_A 278 -------------------------SYIFLALTLADKENSQEFFKFFQKAVDLNP--------------EYPPTYYHRGQ 318 (537)
T ss_dssp -------------------------HHHHHHHHTCCSSCCHHHHHHHHHHHHHCT--------------TCHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHhcCHHHHHHHHHHHhccCC--------------CCHHHHHHHHH
Confidence 245689999999999999999999754332 34556788899
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
++...|++++|+..|++++.+. |....+|.++|.+|..+|++++|+..|+++++++|.++.++..+|.+|..+|++
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSLN----PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 9999999999999999999988 778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHhh
Q 039706 928 DHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e~~ 948 (1166)
++|+..|++++++.|......
T Consensus 395 ~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHHHHHHHHHHHHHHHCSSCS
T ss_pred HHHHHHHHHHHHcCCcchhhH
Confidence 999999999999998876543
No 7
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.7e-25 Score=246.47 Aligned_cols=279 Identities=11% Similarity=0.002 Sum_probs=244.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..+..+|..++..|+|++|+..|++++..+|.+..++..++.++..+|++++|+..++++++.+|.+...+..+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------ 96 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV------ 96 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH------
Confidence 34566899999999999999999999999999999999999999999999999999999999999865432222
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSN-DAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~g-d~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
+.. +...| ++++|+.+|++++.+.|....++..+|.++..+|++++|+..+++++.+.|....
T Consensus 97 --------------~~~--~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 160 (330)
T 3hym_B 97 --------------GCY--YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL 160 (330)
T ss_dssp --------------HHH--HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH
T ss_pred --------------HHH--HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHH
Confidence 111 22467 9999999999999999999999999999999999999999999999999886532
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
. +..+|.+|...|++++|+..+++++...+. ....+..+|.
T Consensus 161 ~-------------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~l~~ 201 (330)
T 3hym_B 161 P-------------------------MLYIGLEYGLTNNSKLAERFFSQALSIAPE--------------DPFVMHEVGV 201 (330)
T ss_dssp H-------------------------HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--------------CHHHHHHHHH
T ss_pred H-------------------------HHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--------------ChHHHHHHHH
Confidence 1 455899999999999999999998654443 3566778899
Q ss_pred HHHHcCChHHHHHHHHHHHhccccC-----CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVES-----HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~-----~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
++...|++++|+.+|++++.+.+.. .+....+|.++|.+|..+|++++|+..|+++++++|+++.++..+|.+|.
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 281 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS 281 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHH
Confidence 9999999999999999999976321 15567899999999999999999999999999999999999999999999
Q ss_pred HhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 923 MIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 923 ~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
.+|++++|+..|++++++.|++...+
T Consensus 282 ~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 282 LMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp HHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred HhccHHHHHHHHHHHHccCCCchHHH
Confidence 99999999999999999988876544
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.1e-25 Score=261.98 Aligned_cols=313 Identities=13% Similarity=0.043 Sum_probs=253.0
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL 655 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l 655 (1166)
.++.|+..+.+++..+|+ ..+|+++|.+|+.+|++++|+..|+++++++|++..+++.+|.+|..+
T Consensus 21 ~~~~A~~~~~~al~~~p~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 21 KYDDAIKYYNWALELKED--------------PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCcc--------------HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 456666666666666653 245778999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh-----------------------------------------
Q 039706 656 GEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK----------------------------------------- 694 (1166)
Q Consensus 656 Gd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~----------------------------------------- 694 (1166)
|++++|+..|++++.+.|.+...................
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 999999999999999998654433222221111110000
Q ss_pred -------------------HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-----h--C-------CChHHHHHHHHHH
Q 039706 695 -------------------VSECMQRSAQLLQNKTSNDAEIALGVIDEALF-----I--S-------SYSEKLLEMKAEA 741 (1166)
Q Consensus 695 -------------------~~e~~~~a~~~l~~~~~gd~eeALe~lekALe-----l--~-------P~~~~al~~lA~~ 741 (1166)
....+..+...+.....|++++|+..|++++. + . |....++..+|.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 11111111112212237999999999999999 5 3 5567899999999
Q ss_pred HHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 039706 742 LFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGN 821 (1166)
Q Consensus 742 y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~ 821 (1166)
+...|++++|+..+++++...|. . ..+..+|.+|...|++++|+..+++++...
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~-~-------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR-V-------------------------NSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC-H-------------------------HHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc-H-------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 99999999999999999998774 1 124668999999999999999999986544
Q ss_pred CCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHH
Q 039706 822 GGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCN 901 (1166)
Q Consensus 822 ~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~le 901 (1166)
+. ....+..+|.++...|++++|+.+|++++.+. |.+..++..+|.+|..+|++++|+..|+
T Consensus 301 ~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 301 SN--------------NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD----PENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp TT--------------CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC----SSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred cC--------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----hhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33 23456778999999999999999999999987 7778899999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 902 LAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 902 kALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+++.++|.++.++..+|.+|..+|++++|+..|++++++.|....
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 999999999999999999999999999999999999999888743
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=1.7e-24 Score=257.95 Aligned_cols=333 Identities=15% Similarity=0.067 Sum_probs=248.5
Q ss_pred CCCchhHHHhhhHHhhCcchhHHHH-------------------HHHHHh--chHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039706 575 KGDRNSEVDRGQEIKQEPNLASAET-------------------IAAQEA--CEKWRLSNRAATRMALGRMRDALSDCML 633 (1166)
Q Consensus 575 ~~~~~a~~~~~~aik~ep~~A~a~~-------------------~aAIe~--~e~~ay~nrA~ayl~lG~y~eAI~~fek 633 (1166)
..++.|+..+.+++..+|++..+++ ..+++. ....+++.+|.+|..+|++++|+..|+
T Consensus 39 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~- 117 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS- 117 (537)
T ss_dssp TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-
T ss_pred ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence 4578899999999999998765443 233333 334778999999999999999999995
Q ss_pred HHHhCCCCHHHH--------------------------------------------------------------------
Q 039706 634 AVAIDPDFLRVQ-------------------------------------------------------------------- 645 (1166)
Q Consensus 634 ALeldP~~~~A~-------------------------------------------------------------------- 645 (1166)
++.++|+....+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence 887777654322
Q ss_pred HHH--------HHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH-------HHhhhHHhHHHHHHHHH-------
Q 039706 646 VRA--------ANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS-------DGLQKAQKVSECMQRSA------- 703 (1166)
Q Consensus 646 ~~L--------A~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~-------~~L~k~~~~~e~~~~a~------- 703 (1166)
..+ +......|++++|+..|+++++..|++...+..+..++ ....+...+...+..+.
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~ 277 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN 277 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCch
Confidence 111 22223346899999999999999999765433333222 22222233333222221
Q ss_pred ----HHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccC
Q 039706 704 ----QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELD 779 (1166)
Q Consensus 704 ----~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld 779 (1166)
....+...|++++|+..|++++...|.++.++..+|.++..+|++++|+..+++++.+.|.+..
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------ 345 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY------------ 345 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------------
Confidence 1122446899999999999999999999999999999999999999999999999999886532
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHH
Q 039706 780 SSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAV 859 (1166)
Q Consensus 780 ~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAi 859 (1166)
.+..+|.+|...|++++|+..+++++...+ .....+..+|.++...|++++|+
T Consensus 346 -------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 346 -------------PYIQLACLLYKQGKFTESEAFFNETKLKFP--------------TLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp -------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------TCTHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------CChHHHHHHHHHHHHhCCHHHHH
Confidence 146689999999999999999999754333 23455677799999999999999
Q ss_pred HHHHHHHhccccCCc--hhHHHHHHHHHHHHHh----------hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 860 EHYTAALSCTVESHP--FAAICFCNRAAAYKAL----------RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 860 e~y~kALel~~e~~p--~~a~a~~nlA~ay~~l----------Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
.+|++++.+.+.... .....++.+|.+|..+ |++++|+..|+++++++|++..++..+|.+|..+|++
T Consensus 399 ~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 999999998743222 2234477889999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHh
Q 039706 928 DHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e~ 947 (1166)
++|+..|++++++.|...+.
T Consensus 479 ~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 479 DEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHHHhCCCcHHH
Confidence 99999999999999887654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.5e-24 Score=250.86 Aligned_cols=322 Identities=11% Similarity=0.049 Sum_probs=256.9
Q ss_pred CCCchhHHHhhhHHhhCcchhHHHH-------------------HHHHHhc--hHHHHHHHHHHHHHcCChHHHHHHHHH
Q 039706 575 KGDRNSEVDRGQEIKQEPNLASAET-------------------IAAQEAC--EKWRLSNRAATRMALGRMRDALSDCML 633 (1166)
Q Consensus 575 ~~~~~a~~~~~~aik~ep~~A~a~~-------------------~aAIe~~--e~~ay~nrA~ayl~lG~y~eAI~~fek 633 (1166)
..++.|+..+.+++...|++..+++ ..+++.. ...+++.+|.+|..+|++++|+..|++
T Consensus 40 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 119 (450)
T 2y4t_A 40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 119 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4568888889999888887655433 2333332 357789999999999999999999999
Q ss_pred HHHhCCCCH---HHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHH
Q 039706 634 AVAIDPDFL---RVQVRA------------ANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSEC 698 (1166)
Q Consensus 634 ALeldP~~~---~A~~~L------------A~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~ 698 (1166)
++.++|.+. .++..+ |.++...|++++|+..|++++.+.|.+...+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---------------- 183 (450)
T 2y4t_A 120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR---------------- 183 (450)
T ss_dssp HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH----------------
T ss_pred HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH----------------
Confidence 999999998 888877 5669999999999999999999999854322211
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 699 MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 699 ~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
+.+ +...|++++|+..|++++...|.++.++..+|.+|..+|++++|+..+++++.+.|.+...+..+.
T Consensus 184 ----~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~----- 252 (450)
T 2y4t_A 184 ----AEC--FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK----- 252 (450)
T ss_dssp ----HHH--HHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-----
T ss_pred ----HHH--HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHH-----
Confidence 111 224799999999999999999999999999999999999999999999999999886533210000
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
..........+|.++...|++++|+.+|++++...+.. .......+..+|.++...|++++|
T Consensus 253 --------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~----------~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 253 --------QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI----------AEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp --------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS----------HHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc----------hHHHHHHHHHHHHHHHHCCCHHHH
Confidence 00011122445899999999999999999986544331 011245677889999999999999
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH------------Hhh-
Q 039706 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE------------MIR- 925 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~------------~lG- 925 (1166)
+..|++++.+. |.++.+|+.+|.+|..+|++++|+.+|+++++++|++..++..++.++. .+|
T Consensus 315 ~~~~~~a~~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 315 IRVCSEVLQME----PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHhC----cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999999988 8889999999999999999999999999999999999999999996644 344
Q ss_pred ----CHHHHHHHHHH-HHHHhhhhH
Q 039706 926 ----DYDHAASDFHR-LIALLTKQI 945 (1166)
Q Consensus 926 ----dyeeAi~~yek-ALeL~P~~~ 945 (1166)
+.+++...|++ +++..|+..
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred CccCCHHHHHHHHHHHHHHhCCCCC
Confidence 55677888886 777777653
No 11
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=3.5e-25 Score=250.71 Aligned_cols=298 Identities=14% Similarity=0.056 Sum_probs=245.9
Q ss_pred CCCchhHH-HhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039706 575 KGDRNSEV-DRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHL 653 (1166)
Q Consensus 575 ~~~~~a~~-~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl 653 (1166)
..++.++. .+.+++...|++... ....++++|.+|+..|++++|+..|+++++++|.+..+++.+|.+|.
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLR---------DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTT---------TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCccc---------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34555665 666666666654311 12346779999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHH
Q 039706 654 ALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEK 733 (1166)
Q Consensus 654 ~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~ 733 (1166)
.+|++++|+.+|+++++++|.+...+.. .+.. +...|++++|+..+++++.+.|....
T Consensus 110 ~~g~~~~A~~~~~~al~~~~~~~~~~~~--------------------l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~ 167 (368)
T 1fch_A 110 ENEQELLAISALRRCLELKPDNQTALMA--------------------LAVS--FTNESLQRQACEILRDWLRYTPAYAH 167 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHH--------------------HHHH--HHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred HCcCHHHHHHHHHHHHhcCCCCHHHHHH--------------------HHHH--HHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 9999999999999999999986432221 1111 22479999999999999999998876
Q ss_pred HHH----------------HHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHH
Q 039706 734 LLE----------------MKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLI 797 (1166)
Q Consensus 734 al~----------------~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lL 797 (1166)
++. .++.++ ..|++++|+..+++++.+.|.... ...+..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~-----------------------~~~~~~l 223 (368)
T 1fch_A 168 LVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSID-----------------------PDVQCGL 223 (368)
T ss_dssp GCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCC-----------------------HHHHHHH
T ss_pred HHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCccc-----------------------HHHHHHH
Confidence 664 456666 999999999999999999886321 1225679
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhH
Q 039706 798 FKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA 877 (1166)
Q Consensus 798 A~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a 877 (1166)
|.+|...|++++|+..|++++...+ .....+..+|.++...|++++|+.+|++++.+. |...
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~~ 285 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRP--------------NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ----PGYI 285 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcH
Confidence 9999999999999999999754332 335677888999999999999999999999988 8889
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh-----------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 878 ICFCNRAAAYKALRHITDAIADCNLAIALDGNY-----------LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 878 ~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~-----------~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
.+++++|.+|..+|++++|+..|++++.+.|+. ..+|..+|.+|..+|++++|...++++++..++..
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 364 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhc
Confidence 999999999999999999999999999999988 89999999999999999999999999998876654
No 12
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.93 E-value=1.7e-24 Score=239.57 Aligned_cols=272 Identities=13% Similarity=0.065 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
.++.+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+.+|++++++.|.+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------- 94 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA-------- 94 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH--------
Confidence 357799999999999999999999999999999999999999999999999999999999999985432211
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHH--------------HH-HHHHccCHHHHHHH
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMK--------------AE-ALFMLRKYEEVIQL 754 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~l--------------A~-~y~~lGdyeeAi~~ 754 (1166)
.+.. +...|++++|+..+++++...|....++..+ +. ++...|++++|+..
T Consensus 95 ------------la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 95 ------------LAVS--HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp ------------HHHH--HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHH
T ss_pred ------------HHHH--HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 1111 2347999999999999999999988777776 66 68899999999999
Q ss_pred HHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc
Q 039706 755 CEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG 834 (1166)
Q Consensus 755 lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~ 834 (1166)
+++++...|.+. ..+..+|.+|...|++++|+.++++++...+
T Consensus 161 ~~~~~~~~~~~~-------------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------------ 203 (327)
T 3cv0_A 161 LHAALEMNPNDA-------------------------QLHASLGVLYNLSNNYDSAAANLRRAVELRP------------ 203 (327)
T ss_dssp HHHHHHHSTTCH-------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHhhCCCCH-------------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------------
Confidence 999999987542 1246789999999999999999999754332
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC-----
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN----- 909 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~----- 909 (1166)
.....+..+|.++...|++++|+.+|++++.+. |....+|.++|.+|..+|++++|+..|++++.+.|.
T Consensus 204 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 277 (327)
T 3cv0_A 204 --DDAQLWNKLGATLANGNRPQEALDAYNRALDIN----PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277 (327)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred --CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence 335567788999999999999999999999988 788899999999999999999999999999999999
Q ss_pred -------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 910 -------YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 910 -------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
...++..+|.+|..+|++++|...++++++..|+..+
T Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 8999999999999999999999999999999888754
No 13
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=2.3e-23 Score=252.27 Aligned_cols=334 Identities=13% Similarity=0.020 Sum_probs=236.3
Q ss_pred CCCchhHHHhhhHHhhCcchhHHHHHHHHHhc---------------------h----HHHHHHHHHHHHHcCChHHHHH
Q 039706 575 KGDRNSEVDRGQEIKQEPNLASAETIAAQEAC---------------------E----KWRLSNRAATRMALGRMRDALS 629 (1166)
Q Consensus 575 ~~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~---------------------e----~~ay~nrA~ayl~lG~y~eAI~ 629 (1166)
..++.|+..+.+.+..+|++..+....+.-.. . ...|..++..|...|++++|+.
T Consensus 214 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 44578888999999999887665443221000 0 0011222333344444444444
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHH-------
Q 039706 630 DCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRS------- 702 (1166)
Q Consensus 630 ~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a------- 702 (1166)
.|++++.. |.+..++..+|.+|...|++++|+..|+++++.+|.+...+..+..++...++...+...+..+
T Consensus 294 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 372 (597)
T 2xpi_A 294 YLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372 (597)
T ss_dssp HHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCccc
Confidence 44444444 3444444444444444444444444444444444444333333333333222222222211111
Q ss_pred -----HHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccc
Q 039706 703 -----AQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSME 777 (1166)
Q Consensus 703 -----~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ 777 (1166)
.....+...|++++|+.+|++++++.|.+..++..++.+|...|++++|+..|++++...|.+..
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------- 442 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL---------- 442 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH----------
Confidence 00111335899999999999999999999999999999999999999999999999998875432
Q ss_pred cCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHH
Q 039706 778 LDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSE 857 (1166)
Q Consensus 778 ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeE 857 (1166)
.+..++.+|...|++++|+.+|++++...+ .....+..+|.++...|++++
T Consensus 443 ---------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 443 ---------------PYLFLGMQHMQLGNILLANEYLQSSYALFQ--------------YDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp ---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--------------CCHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------CChHHHHHHHHHHHHhCCHHH
Confidence 145689999999999999999999744322 234567788999999999999
Q ss_pred HHHHHHHHHhcccc--CCchh-HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHH
Q 039706 858 AVEHYTAALSCTVE--SHPFA-AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDF 934 (1166)
Q Consensus 858 Aie~y~kALel~~e--~~p~~-a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~y 934 (1166)
|+++|++++++.+. ..|.. ..+|..+|.+|...|++++|+..|+++++++|+++.+|..+|.+|...|++++|+..|
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999998532 13554 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHhh
Q 039706 935 HRLIALLTKQIEKS 948 (1166)
Q Consensus 935 ekALeL~P~~~e~~ 948 (1166)
++++++.|++....
T Consensus 574 ~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 574 HESLAISPNEIMAS 587 (597)
T ss_dssp HHHHHHCTTCHHHH
T ss_pred HHHHhcCCCChHHH
Confidence 99999999886644
No 14
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=1.5e-24 Score=246.85 Aligned_cols=269 Identities=14% Similarity=0.041 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
.|+++|.+++..|++++|+..|++++.++|++..+|+.+|.+|..+|++++|+.+|+++++++|.+...+..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------- 138 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMA-------- 138 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH--------
Confidence 367799999999999999999999999999999999999999999999999999999999999986432222
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHH----------HHHHHHccCHHHHHHHHHHHH
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMK----------AEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~l----------A~~y~~lGdyeeAi~~lekAL 759 (1166)
.+.+ +...|++++|+.+|++++.+.|....++..+ |.++..+|++++|+.+|++++
T Consensus 139 ------------l~~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 204 (365)
T 4eqf_A 139 ------------LAVS--YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204 (365)
T ss_dssp ------------HHHH--HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred ------------HHHH--HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 1222 2247999999999999999999877666555 999999999999999999999
Q ss_pred HhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHH
Q 039706 760 HFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVREL 839 (1166)
Q Consensus 760 el~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a 839 (1166)
.+.|..... ..+..+|.+|...|++++|+.+|++++...+ ...
T Consensus 205 ~~~p~~~~~-----------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------------~~~ 247 (365)
T 4eqf_A 205 HQNGDMIDP-----------------------DLQTGLGVLFHLSGEFNRAIDAFNAALTVRP--------------EDY 247 (365)
T ss_dssp HHSCSSCCH-----------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------TCH
T ss_pred HhCcCccCH-----------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------CCH
Confidence 998863211 1246799999999999999999999854333 335
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC----------
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN---------- 909 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~---------- 909 (1166)
..+..+|.++...|++++|+.+|++++++. |..+.+|+++|.+|..+|++++|+.+|+++++++|.
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 323 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQ----PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHP 323 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchh
Confidence 677888999999999999999999999998 888999999999999999999999999999999987
Q ss_pred --hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHh
Q 039706 910 --YLKAISRRATLYEMIRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 910 --~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~ 941 (1166)
...+|..++.++..+|+.+.|...+++.+...
T Consensus 324 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 324 AISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp ---CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence 36789999999999999999888777655443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=233.30 Aligned_cols=285 Identities=11% Similarity=-0.012 Sum_probs=234.6
Q ss_pred CCCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039706 575 KGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA 654 (1166)
Q Consensus 575 ~~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~ 654 (1166)
..++.|+..+.+.+..+|.+.. ++..++.+++.+|++++|+..++++++.+|.+..+++.+|.++..
T Consensus 36 g~~~~A~~~~~~~l~~~p~~~~-------------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKDPFHAS-------------CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTT-------------THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCChh-------------hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 3445566666666666555443 345588999999999999999999999999999999999999999
Q ss_pred cC-ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHH
Q 039706 655 LG-EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEK 733 (1166)
Q Consensus 655 lG-d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~ 733 (1166)
+| ++++|+.+|++++.++|.+...+..+ +.. +...|++++|+..|++++.+.|....
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l--------------------~~~--~~~~~~~~~A~~~~~~a~~~~~~~~~ 160 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAY--------------------GHS--FAVESEHDQAMAAYFTAAQLMKGCHL 160 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHH--------------------HHH--HHHHTCHHHHHHHHHHHHHHTTTCSH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHH--------------------HHH--HHHccCHHHHHHHHHHHHHhccccHH
Confidence 99 99999999999999999865432222 111 12469999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 039706 734 LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAA 813 (1166)
Q Consensus 734 al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~ 813 (1166)
++..+|.+|..+|++++|+..+++++...|.+.. .+..+|.+|...|++++|+.+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------------------~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF-------------------------VMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH-------------------------HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH-------------------------HHHHHHHHHHHcccHHHHHHH
Confidence 9999999999999999999999999999876422 246799999999999999999
Q ss_pred HHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhch
Q 039706 814 LERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHI 893 (1166)
Q Consensus 814 lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ 893 (1166)
+++++...+... .....+.....+..+|.++...|++++|+.+|++++++. |.+..+|.++|.+|..+|++
T Consensus 216 ~~~a~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~~ 286 (330)
T 3hym_B 216 FLDALEKIKAIG-----NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI----PQNASTYSAIGYIHSLMGNF 286 (330)
T ss_dssp HHHHHHHHTTTS-----CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhhhcc-----ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC----ccchHHHHHHHHHHHHhccH
Confidence 999754221100 000012334567788999999999999999999999988 78899999999999999999
Q ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHHH-HHhhCHH
Q 039706 894 TDAIADCNLAIALDGNYLKAISRRATLY-EMIRDYD 928 (1166)
Q Consensus 894 eeAi~~lekALeldP~~~~A~~~LA~ay-~~lGdye 928 (1166)
++|+.+|+++++++|++..++..++.++ ..+|+.+
T Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 287 ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999999998 4566543
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-23 Score=247.77 Aligned_cols=320 Identities=13% Similarity=0.070 Sum_probs=222.8
Q ss_pred CchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------------
Q 039706 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF--------------- 641 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~--------------- 641 (1166)
++.|+..+.+++..+|++. .+|+.+|.+|..+|++++|+..|++++.++|..
T Consensus 55 ~~~A~~~~~~al~~~p~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (514)
T 2gw1_A 55 LKKVVEMSTKALELKPDYS-------------KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121 (514)
T ss_dssp HHHHHHHHHHHHHHCSCCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccChHHH-------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH
Confidence 4555555555555555543 445668999999999999999999998887632
Q ss_pred ----------------------------------------------------------------HHHHHHHHHHHHH---
Q 039706 642 ----------------------------------------------------------------LRVQVRAANCHLA--- 654 (1166)
Q Consensus 642 ----------------------------------------------------------------~~A~~~LA~lyl~--- 654 (1166)
..+++.+|.+++.
T Consensus 122 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (514)
T 2gw1_A 122 AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS 201 (514)
T ss_dssp HHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh
Confidence 6677888888776
Q ss_pred cCChHHHHHHHHHHHH-----c--CCCch-------hHHHHHHHHHHHhhhHHhHHHHHHHHH-----------HHHHhh
Q 039706 655 LGEIEDASKYFRMCLQ-----S--GSDVC-------VDQKIAVEASDGLQKAQKVSECMQRSA-----------QLLQNK 709 (1166)
Q Consensus 655 lGd~eeAl~~fekALe-----l--~P~n~-------~a~~~l~Ea~~~L~k~~~~~e~~~~a~-----------~~l~~~ 709 (1166)
.|++++|+..|++++. + .|.+. ..+..+..++...++...+...+..+. ....+.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~ 281 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMA 281 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHH
Confidence 8899999999999988 5 55432 112222222222222222221111110 011123
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
..|++++|+..+++++...|.+..++..+|.++..+|++++|+..+++++.+.|.+..
T Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------------- 339 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF---------------------- 339 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH----------------------
T ss_pred HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHH----------------------
Confidence 3566666666666666666666666666666666666666666666666665554321
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT 869 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~ 869 (1166)
.+..+|.+|...|++++|+..+++++...+ .....+..+|.++...|++++|+.+|++++.+.
T Consensus 340 ---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 340 ---PYIQLACLAYRENKFDDCETLFSEAKRKFP--------------EAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp ---HHHHHHHHTTTTTCHHHHHHHHHHHHHHST--------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHcc--------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 245577778888888888888887643222 223456778999999999999999999999987
Q ss_pred ccCCc--hhHHHHHHHHHHHHH---hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 870 VESHP--FAAICFCNRAAAYKA---LRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 870 ~e~~p--~~a~a~~nlA~ay~~---lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
+.... ....+|+++|.++.. +|++++|+..|++++.++|+++.++..+|.+|..+|++++|+..|++++++.|++
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 32211 114489999999999 9999999999999999999999999999999999999999999999999999988
Q ss_pred HHhh
Q 039706 945 IEKS 948 (1166)
Q Consensus 945 ~e~~ 948 (1166)
.+.+
T Consensus 483 ~~~~ 486 (514)
T 2gw1_A 483 EEKL 486 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 17
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.91 E-value=6.1e-23 Score=248.49 Aligned_cols=346 Identities=12% Similarity=0.012 Sum_probs=234.1
Q ss_pred CCchhHHHhhhHHhhCcchhHH------------------HHHHHH-HhchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 576 GDRNSEVDRGQEIKQEPNLASA------------------ETIAAQ-EACEKWRLSNRAATRMALGRMRDALSDCMLAVA 636 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a------------------~~~aAI-e~~e~~ay~nrA~ayl~lG~y~eAI~~fekALe 636 (1166)
.++.|+..+.+.+...|+.... .+..++ ......+++.+|.+|...|++++|+..|++
T Consensus 99 ~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--- 175 (597)
T 2xpi_A 99 QYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGE--- 175 (597)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCS---
T ss_pred CchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhc---
Confidence 4566777777777666654221 111111 122346788999999999999999999986
Q ss_pred hCCCC-------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH--
Q 039706 637 IDPDF-------------------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV-- 695 (1166)
Q Consensus 637 ldP~~-------------------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~-- 695 (1166)
..|.. ..+|+.+|.+|...|++++|+..|+++++.+|.+...+..+..+..........
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 255 (597)
T 2xpi_A 176 TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV 255 (597)
T ss_dssp SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHH
T ss_pred cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHH
Confidence 45554 889999999999999999999999999999998766544433211100000000
Q ss_pred ------------HHHHHHHHH--HHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 696 ------------SECMQRSAQ--LLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 696 ------------~e~~~~a~~--~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
......... ...+...|++++|+..|++++.. |.+..++..++.+|...|++++|+..|++++..
T Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp HHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 000000000 00012345555666666555554 445555556666666666666666666666655
Q ss_pred ccCCCCCccccCcccccCccchhhh---------hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 762 AEKNSPPLDANGQSMELDSSESTKH---------VSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 762 ~p~n~~a~~~~g~~l~ld~~~~~~~---------~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
.|.+...+..++.++...+...... .......+..++.+|...|++++|+.+|++++..
T Consensus 335 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------ 402 (597)
T 2xpi_A 335 DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM------------ 402 (597)
T ss_dssp CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------
Confidence 5554443322211110000000000 0000123466889999999999999999987432
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~ 912 (1166)
.+.....+..+|..+...|++++|++.|++++.+. |.+..+|..+|.+|...|++++|+..|+++++++|.++.
T Consensus 403 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 476 (597)
T 2xpi_A 403 --DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF----QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL 476 (597)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 22345567788999999999999999999999887 778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+|..+|.+|...|++++|+..|++++++.|+
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999654
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=1.5e-23 Score=237.23 Aligned_cols=282 Identities=11% Similarity=0.042 Sum_probs=221.8
Q ss_pred HHHHHcCChHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 616 ATRMALGRMRDALS-DCMLAVAIDPDFL----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~-~fekALeldP~~~----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
.++..+|+|++|+. .|++++.+.|.++ .+++.+|.+|...|++++|+.+|+++++++|.+...+..+
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------- 104 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL-------- 104 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH--------
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH--------
Confidence 37778899999999 9999999998774 6799999999999999999999999999999864322211
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
+.+ +...|++++|+..|++++.+.|.+..++..+|.+|..+|++++|+..+++++.+.|.+...+.
T Consensus 105 ------------~~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 170 (368)
T 1fch_A 105 ------------GTT--QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170 (368)
T ss_dssp ------------HHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred ------------HHH--HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 111 234799999999999999999999999999999999999999999999999999987765432
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
..+...... .. ...+..++.++ ..|++++|+..|++++...+. ......+..+|.++.
T Consensus 171 ~~~~~~~~~--~~-------~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~------------~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 171 PAEEGAGGA--GL-------GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPT------------SIDPDVQCGLGVLFN 228 (368)
T ss_dssp ------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTT------------SCCHHHHHHHHHHHH
T ss_pred HHHHHhhhh--cc-------cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcC------------cccHHHHHHHHHHHH
Confidence 211110000 00 00012355555 899999999999997543332 114567778899999
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
..|++++|+.+|++++.+. |..+.+|+++|.+|..+|++++|+..|+++++++|.++.++..+|.+|..+|++++|
T Consensus 229 ~~g~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVR----PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988 888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhH
Q 039706 931 ASDFHRLIALLTKQI 945 (1166)
Q Consensus 931 i~~yekALeL~P~~~ 945 (1166)
+..|++++++.|+..
T Consensus 305 ~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 305 VEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCCCC
Confidence 999999999999873
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=2e-22 Score=237.00 Aligned_cols=287 Identities=16% Similarity=0.062 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAI---------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ 679 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALel---------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~ 679 (1166)
..|.++|.+|..+|++++|+..|++|+++ +|....+|.++|.+|..+|++++|+.+|++++++.+......
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 55777999999999999999999999987 678889999999999999999999999999998643211000
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH---ccCHHHHHHHHH
Q 039706 680 KIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFM---LRKYEEVIQLCE 756 (1166)
Q Consensus 680 ~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~---lGdyeeAi~~le 756 (1166)
. . .....+...+..+.....++|++|+.+|+++++++|+++.++..++.++.. .+++++|+..++
T Consensus 132 ~-----------~-~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 132 R-----------I-ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp C-----------C-CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred c-----------h-hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 0 0 000111111222223346789999999999999999999999999988665 467789999999
Q ss_pred HHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch
Q 039706 757 QTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV 836 (1166)
Q Consensus 757 kALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~ 836 (1166)
++++++|.+... .......++.++...+++++|+.++++++... +
T Consensus 200 ~al~l~p~~~~~---------------------~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--------------~ 244 (472)
T 4g1t_A 200 QAIRLNPDNQYL---------------------KVLLALKLHKMREEGEEEGEGEKLVEEALEKA--------------P 244 (472)
T ss_dssp HHHHHCSSCHHH---------------------HHHHHHHHHHCC------CHHHHHHHHHHHHC--------------S
T ss_pred HHhhcCCcchHH---------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--------------c
Confidence 999998865322 00111223334455678899999999974433 3
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh-------------------hchhHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL-------------------RHITDAI 897 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l-------------------Gq~eeAi 897 (1166)
.....+..+|.++...|++++|+..|++|+++. |.++.+++++|.+|... ..+++|+
T Consensus 245 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 320 (472)
T 4g1t_A 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI----PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV 320 (472)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH
Confidence 345667788999999999999999999999998 88999999999998654 4578899
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 898 ADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 898 ~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
..+++++.++|.+..++..+|.+|..+|++++|+..|++++++.|....
T Consensus 321 ~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999999999999999999998766543
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=3.2e-23 Score=243.78 Aligned_cols=300 Identities=16% Similarity=0.091 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCchhH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAID--------PDFLRVQVRAANCHLALG--EIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeld--------P~~~~A~~~LA~lyl~lG--d~eeAl~~fekALel~P~n~~a 678 (1166)
..|.|+|.+|..+|++++|+.+|++++++. +..+.++..+|.++...| +|++|+.+|+++++++|+++..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~ 174 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence 468899999999999999999999999874 456788999998887765 6999999999999999998877
Q ss_pred HHHHHHHHHHhhhH---HhHHHHHHHH--------------HHHHH--hhcCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 679 QKIAVEASDGLQKA---QKVSECMQRS--------------AQLLQ--NKTSNDAEIALGVIDEALFISSYSEKLLEMKA 739 (1166)
Q Consensus 679 ~~~l~Ea~~~L~k~---~~~~e~~~~a--------------~~~l~--~~~~gd~eeALe~lekALel~P~~~~al~~lA 739 (1166)
+..+..+...+... ..+...+..+ +..+. ....+++++|+.+|++++.+.|....++..+|
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg 254 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 66555554333222 1222211111 11111 22357889999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHH-----------------
Q 039706 740 EALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYF----------------- 802 (1166)
Q Consensus 740 ~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~----------------- 802 (1166)
.+|...|++++|+..+++++++.|++..+ +..+|.+|.
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------------~~~lg~~y~~~~~~~~~~~~~~~~~~ 309 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYIPNNAYL-------------------------HCQIGCCYRAKVFQVMNLRENGMYGK 309 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHH-------------------------HHHHHHHHHHHHHHHHHC------CH
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCChHHH-------------------------HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999976443 222333332
Q ss_pred --HcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHH
Q 039706 803 --TLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICF 880 (1166)
Q Consensus 803 --~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~ 880 (1166)
..+.+++|+..++++....+ .....+..+|.++...|+|++|+.+|+++|.+++.. .....++
T Consensus 310 ~~~~~~~~~A~~~~~~a~~~~~--------------~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~-~~~~~~~ 374 (472)
T 4g1t_A 310 RKLLELIGHAVAHLKKADEAND--------------NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP-VAKQLLH 374 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT--------------TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH-HHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhhcCC--------------chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC-hHHHHHH
Confidence 23346677777777643322 233456678999999999999999999999987221 1223456
Q ss_pred HHHHHH-HHHhhchhHHHHHHHHHHHh------------------------CCChHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 881 CNRAAA-YKALRHITDAIADCNLAIAL------------------------DGNYLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 881 ~nlA~a-y~~lGq~eeAi~~lekALel------------------------dP~~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
+++|.+ +..+|++++|+.+|.+||++ +|.++.+|..+|.+|..+|++++|+.+|+
T Consensus 375 ~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666654 45789999999999998876 46667789999999999999999999999
Q ss_pred HHHHHhhhhHHhh
Q 039706 936 RLIALLTKQIEKS 948 (1166)
Q Consensus 936 kALeL~P~~~e~~ 948 (1166)
+||++.|..+.+.
T Consensus 455 kALe~~~~~p~a~ 467 (472)
T 4g1t_A 455 RGLESGSLIPSAS 467 (472)
T ss_dssp -------------
T ss_pred HHHhcCCCCCcHh
Confidence 9999988876543
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=8.9e-23 Score=232.10 Aligned_cols=266 Identities=12% Similarity=0.060 Sum_probs=210.0
Q ss_pred HHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 039706 628 LSDCMLAVAIDPDFL----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSA 703 (1166)
Q Consensus 628 I~~fekALeldP~~~----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~ 703 (1166)
+..+.+++...+.++ ..++.+|.++...|++++|+.+|+++++++|.+...+. ..+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------------------~lg 106 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQ--------------------FLG 106 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH--------------------HHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHH--------------------HHH
Confidence 344555555555544 45999999999999999999999999999998643222 122
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccch
Q 039706 704 QLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSES 783 (1166)
Q Consensus 704 ~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~ 783 (1166)
.. +...|++++|+..|++++.++|.+..++..+|.+|..+|++++|+.+|++++.+.|.+...+..++.
T Consensus 107 ~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~--------- 175 (365)
T 4eqf_A 107 IT--QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG--------- 175 (365)
T ss_dssp HH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------
T ss_pred HH--HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhcc---------
Confidence 22 2247999999999999999999999999999999999999999999999999999876544221110
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHH
Q 039706 784 TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYT 863 (1166)
Q Consensus 784 ~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~ 863 (1166)
....+..+|.+|...|++++|+.+|++++...+. ......+..+|.++...|++++|+.+|+
T Consensus 176 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 237 (365)
T 4eqf_A 176 ------SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD------------MIDPDLQTGLGVLFHLSGEFNRAIDAFN 237 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHSCS------------SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC------------ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0111345789999999999999999998554332 1135567788999999999999999999
Q ss_pred HHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 864 AALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 864 kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+++++. |.++.+|+++|.+|..+|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..|++++++.|+
T Consensus 238 ~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 238 AALTVR----PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 999998 8889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHH
Q 039706 944 QIE 946 (1166)
Q Consensus 944 ~~e 946 (1166)
...
T Consensus 314 ~~~ 316 (365)
T 4eqf_A 314 SRN 316 (365)
T ss_dssp C--
T ss_pred cCC
Confidence 654
No 22
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.4e-22 Score=211.85 Aligned_cols=237 Identities=20% Similarity=0.210 Sum_probs=204.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
...+|+.+|.+++..|+|++|+..|+++++++ .+..++..+|.+|..+|++++|+.+|++++++.|....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------- 73 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA--------- 73 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc---------
Confidence 34567889999999999999999999999999 99999999999999999999999999999887654210
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCC
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~ 766 (1166)
++. ..+.++..+|.++..+|++++|+..+++++.+.|.
T Consensus 74 --------------------------~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-- 111 (258)
T 3uq3_A 74 --------------------------DYK--------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-- 111 (258)
T ss_dssp --------------------------CHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--
T ss_pred --------------------------chH--------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--
Confidence 000 12466778888888899999999999888887652
Q ss_pred CCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhh
Q 039706 767 PPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAG 846 (1166)
Q Consensus 767 ~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG 846 (1166)
+.++..+|++++|+..+++++. ..+.....+..+|
T Consensus 112 -------------------------------~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~~~~~~ 146 (258)
T 3uq3_A 112 -------------------------------ADILTKLRNAEKELKKAEAEAY--------------VNPEKAEEARLEG 146 (258)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHH--------------CCHHHHHHHHHHH
T ss_pred -------------------------------hHHHHHHhHHHHHHHHHHHHHH--------------cCcchHHHHHHHH
Confidence 2346677888899988888632 3445567788889
Q ss_pred HHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 847 NEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 847 ~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
.+++..|++++|+.+|++++.+. |.+..+|+++|.+|..+|++++|+..|+++++++|+++.++..+|.+|..+|+
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 039706 927 YDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 927 yeeAi~~yekALeL~P~~ 944 (1166)
+++|+..|++++++.|+.
T Consensus 223 ~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 223 YASALETLDAARTKDAEV 240 (258)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhh
Confidence 999999999999999543
No 23
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=1.4e-22 Score=236.83 Aligned_cols=249 Identities=9% Similarity=-0.022 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGE-IEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd-~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
.+|+++|.++...|++++|+..|+++|.++|++..+|+.+|.+|..+|+ +++|+.+|++++.++|++...+..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~--- 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV--- 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH---
Confidence 3455589999999999999999999999999999999999999999997 999999999999999997554333222
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
++ ...|++++|+..|+++|+++|.+..+|..+|.++..+|++++|+.+|+++|+++|.+..
T Consensus 175 -----------------~~--~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~ 235 (382)
T 2h6f_A 175 -----------------LV--EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS 235 (382)
T ss_dssp -----------------HH--HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred -----------------HH--HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence 21 23589999999999999999999999999999999999999999999999999997643
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHH-cCCHHHH-----HHHHHHHhcCCCCchhhhhhhhccchHHHHH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT-LGRLEEA-----IAALERHESGNGGKMLESLIPLAGTVRELLC 841 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~-lGd~eeA-----l~~lekAl~~~~~k~le~a~~L~~~~~~a~~ 841 (1166)
+ |..+|.+|.. .|.+++| +.+|++++... +.....
T Consensus 236 a-------------------------~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--------------P~~~~a 276 (382)
T 2h6f_A 236 V-------------------------WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--------------PHNESA 276 (382)
T ss_dssp H-------------------------HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--------------TTCHHH
T ss_pred H-------------------------HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--------------CCCHHH
Confidence 3 4668888988 5554666 35566653322 223444
Q ss_pred HhhhhHHHHHcC--ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhh---------chhHHHHHHHHH-HHhCCC
Q 039706 842 RKSAGNEAFQAG--RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALR---------HITDAIADCNLA-IALDGN 909 (1166)
Q Consensus 842 l~~lG~~~~~~G--~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lG---------q~eeAi~~lekA-LeldP~ 909 (1166)
|..+|.++...| ++++|++.+.++ +.+ |....++..+|.+|..++ .+++|+..|+++ ++++|.
T Consensus 277 ~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~----p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 277 WNYLKGILQDRGLSKYPNLLNQLLDL-QPS----HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHTTTCGGGCHHHHHHHHHH-TTT----CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHccCccchHHHHHHHHHh-ccC----CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch
Confidence 555566666655 466666666665 444 566666666666666663 246666667666 666666
Q ss_pred hHHHHHHHHHHHHH
Q 039706 910 YLKAISRRATLYEM 923 (1166)
Q Consensus 910 ~~~A~~~LA~ay~~ 923 (1166)
....|..++.++..
T Consensus 352 r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 352 RKEYWRYIGRSLQS 365 (382)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666665554
No 24
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.89 E-value=3.6e-21 Score=219.63 Aligned_cols=293 Identities=14% Similarity=0.095 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDF----LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~----~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
.+++.+|.+++..|++++|+..|++++.+.|.+ ..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 80 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------- 80 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---------
Confidence 356789999999999999999999999999998 4689999999999999999999999998753211
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHccC-----------
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS------EKLLEMKAEALFMLRK----------- 747 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~------~~al~~lA~~y~~lGd----------- 747 (1166)
.........+...+.. +...|++++|+.++++++.+.|.. ..++..+|.+|..+|+
T Consensus 81 -----~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 153 (406)
T 3sf4_A 81 -----GDQLGEAKASGNLGNT--LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153 (406)
T ss_dssp -----TCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------C
T ss_pred -----cccHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhh
Confidence 0011111222222222 235899999999999999987643 4589999999999999
Q ss_pred ---------HHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039706 748 ---------YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHE 818 (1166)
Q Consensus 748 ---------yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl 818 (1166)
+++|+.++++++.+.+..... ......+..+|.+|...|++++|+.++++++
T Consensus 154 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 154 EFPEEVRDALQAAVDFYEENLSLVTALGDR-------------------AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccCc-------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999999886543211 1123346779999999999999999999974
Q ss_pred cCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc--CCchhHHHHHHHHHHHHHhhchhHH
Q 039706 819 SGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE--SHPFAAICFCNRAAAYKALRHITDA 896 (1166)
Q Consensus 819 ~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq~eeA 896 (1166)
.. ..........+..+..+|.++...|++++|+.+|++++.+.+. ..+..+.++.++|.+|..+|++++|
T Consensus 215 ~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 215 LI--------AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HH--------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HH--------HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 31 1112223344667888999999999999999999999988632 2223377899999999999999999
Q ss_pred HHHHHHHHHhCCCh------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 897 IADCNLAIALDGNY------LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 897 i~~lekALeldP~~------~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
+.+|++++.+.+.. ..++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 99999999986543 6789999999999999999999999999997665
No 25
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.89 E-value=2.9e-21 Score=222.58 Aligned_cols=295 Identities=15% Similarity=0.142 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFL----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
..++.+|.+++..|+|++|+..|+++++++|++. .+++.+|.+|..+|++++|+.+|++++.+...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---------- 118 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS---------- 118 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------
Confidence 4467799999999999999999999999999986 58999999999999999999999999875211
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh------CCChHHHHHHHHHHHHHccC-----------
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFI------SSYSEKLLEMKAEALFMLRK----------- 747 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel------~P~~~~al~~lA~~y~~lGd----------- 747 (1166)
.........++...+.+ +...|++++|+.+|++++.+ .+....++..+|.+|..+|+
T Consensus 119 ----~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 192 (411)
T 4a1s_A 119 ----MNDRLGEAKSSGNLGNT--LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192 (411)
T ss_dssp ----TTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred ----ccCchHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhh
Confidence 00011111222222222 23589999999999999998 55667899999999999999
Q ss_pred ------HHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 039706 748 ------YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGN 821 (1166)
Q Consensus 748 ------yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~ 821 (1166)
+++|+.++++++.+.+.... .....+.+..+|.+|...|++++|+.++++++...
T Consensus 193 ~~a~~~~~~A~~~~~~al~~~~~~~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 193 DDVKEALTRAVEFYQENLKLMRDLGD-------------------RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99999999999987654321 01223446779999999999999999999974321
Q ss_pred CCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC--CchhHHHHHHHHHHHHHhhchhHHHHH
Q 039706 822 GGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES--HPFAAICFCNRAAAYKALRHITDAIAD 899 (1166)
Q Consensus 822 ~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~--~p~~a~a~~nlA~ay~~lGq~eeAi~~ 899 (1166)
.........+..+..+|.++...|++++|+.+|++++.+.+.. ......++.++|.+|..+|++++|+.+
T Consensus 254 --------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (411)
T 4a1s_A 254 --------REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEY 325 (411)
T ss_dssp --------HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1122233345678889999999999999999999999987422 224478899999999999999999999
Q ss_pred HHHHHHhCCC------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 900 CNLAIALDGN------YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 900 lekALeldP~------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|++++.+.+. ...++..+|.+|..+|++++|+.+|++++++.++..+
T Consensus 326 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 9999998544 3568999999999999999999999999998766533
No 26
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=5.9e-22 Score=214.78 Aligned_cols=244 Identities=16% Similarity=0.056 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..++++|.+++..|++++|+..|+++++++|.+..+++.+|.+|..+|++++|+.+|++++. .|.+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~----------- 71 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK----------- 71 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-----------
Confidence 45688999999999999999999999999999999999999999999999999999999998 333211
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
....++..+|.++..+|++++|+..+++++++.|.+..
T Consensus 72 -----------------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~- 109 (272)
T 3u4t_A 72 -----------------------------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD- 109 (272)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH-
Confidence 02345566677777777777777777777776665422
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
.+..+|.+|...|++++|+.+|++++...+ .....+..+|..
T Consensus 110 ------------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------------~~~~~~~~l~~~ 151 (272)
T 3u4t_A 110 ------------------------MYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--------------TDPKVFYELGQA 151 (272)
T ss_dssp ------------------------HHHHHHHHHHHTTCHHHHHHHHGGGCCSSC--------------CCHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHccCHHHHHHHHHHHhhcCC--------------CcHHHHHHHHHH
Confidence 134567777777777777777776643322 234455666755
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhC---CC-----hHHHHHHH
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH---ITDAIADCNLAIALD---GN-----YLKAISRR 917 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq---~eeAi~~lekALeld---P~-----~~~A~~~L 917 (1166)
++..+++++|+.+|++++++. |.+..+++.+|.++..+++ +++|+..|++++++. |+ ...++..+
T Consensus 152 ~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (272)
T 3u4t_A 152 YYYNKEYVKADSSFVKVLELK----PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 555669999999999999887 7778889999999999998 888999999999886 44 34688889
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 918 ATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|.+|..+|++++|+.+|+++++++|++...+
T Consensus 228 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 228 AYYYTINRDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence 9999999999999999999999999887654
No 27
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.89 E-value=4.3e-21 Score=211.19 Aligned_cols=291 Identities=15% Similarity=0.099 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDF----LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~----~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
.++.+|.+++..|++++|+..|+++++++|.+ ..++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------- 76 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI---------- 76 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc----------
Confidence 45678999999999999999999999999998 4788999999999999999999999998753210
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHccC------------
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS------EKLLEMKAEALFMLRK------------ 747 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~------~~al~~lA~~y~~lGd------------ 747 (1166)
.........+...+.. +...|++++|+.++++++.+.+.. ..++..+|.++..+|+
T Consensus 77 ----~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3ro2_A 77 ----GDQLGEAKASGNLGNT--LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150 (338)
T ss_dssp ----TCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----
T ss_pred ----cccHHHHHHHHHHHHH--HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhh
Confidence 1111111222222222 235899999999999999886533 4588999999999999
Q ss_pred --------HHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039706 748 --------YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES 819 (1166)
Q Consensus 748 --------yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~ 819 (1166)
+++|+..+++++.+.+.... .......+..+|.+|...|++++|+.++++++.
T Consensus 151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 151 FPEDVRNALQAAVDLYEENLSLVTALGD-------------------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCC-------------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999987553211 112233467799999999999999999999743
Q ss_pred CCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc--CCchhHHHHHHHHHHHHHhhchhHHH
Q 039706 820 GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE--SHPFAAICFCNRAAAYKALRHITDAI 897 (1166)
Q Consensus 820 ~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq~eeAi 897 (1166)
. ..........+..+..+|.++...|++++|+.+|++++.+.+. ..+....++..+|.+|..+|++++|+
T Consensus 212 ~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 212 I--------AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp H--------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred H--------HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 1 1122223444667888999999999999999999999987632 22334778999999999999999999
Q ss_pred HHHHHHHHhCCCh------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 898 ADCNLAIALDGNY------LKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 898 ~~lekALeldP~~------~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
.++++++.+.+.. ..++..+|.+|..+|++++|+..|++++++.++
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9999999986543 568999999999999999999999999988654
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.88 E-value=2.3e-22 Score=234.95 Aligned_cols=249 Identities=11% Similarity=-0.014 Sum_probs=218.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCC
Q 039706 634 AVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSND 713 (1166)
Q Consensus 634 ALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd 713 (1166)
+|.++|++..+|..+|.++..+|++++|+..|+++|.++|++...+..+.. ++ ...|+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~--------------------~l--~~~g~ 146 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRV--------------------LL--KSLQK 146 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH--------------------HH--HHTTC
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHH--------------------HH--HHccc
Confidence 467789999999999999999999999999999999999997554333222 21 23675
Q ss_pred -HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhH
Q 039706 714 -AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLW 792 (1166)
Q Consensus 714 -~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~w 792 (1166)
+++|+..|+++|.++|.+..+|..+|.+|..+|++++|+..|+++|.++|++..+
T Consensus 147 d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a------------------------ 202 (382)
T 2h6f_A 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA------------------------ 202 (382)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH------------------------
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHH------------------------
Confidence 9999999999999999999999999999999999999999999999999976432
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH-cCChHHH-----HHHHHHHH
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ-AGRHSEA-----VEHYTAAL 866 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~-~G~yeEA-----ie~y~kAL 866 (1166)
|..+|.++..+|++++|+.+|++++.. .+....+|..+|.++.. .+.+++| +.+|++||
T Consensus 203 -~~~lg~~~~~~g~~~eAl~~~~~al~l--------------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al 267 (382)
T 2h6f_A 203 -WQHRQWVIQEFKLWDNELQYVDQLLKE--------------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267 (382)
T ss_dssp -HHHHHHHHHHHTCCTTHHHHHHHHHHH--------------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCChHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 567999999999999999999998443 34456778888999999 5555888 59999999
Q ss_pred hccccCCchhHHHHHHHHHHHHHhh--chhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh--------C-HHHHHHHHH
Q 039706 867 SCTVESHPFAAICFCNRAAAYKALR--HITDAIADCNLAIALDGNYLKAISRRATLYEMIR--------D-YDHAASDFH 935 (1166)
Q Consensus 867 el~~e~~p~~a~a~~nlA~ay~~lG--q~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG--------d-yeeAi~~ye 935 (1166)
.++ |.+..+|++++.++..+| ++++|++.+.++ +++|++..++..+|.+|..++ + +++|+..|+
T Consensus 268 ~l~----P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 268 KLV----PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp HHS----TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHC----CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 998 899999999999999988 699999999998 999999999999999999985 3 599999999
Q ss_pred HH-HHHhhhhHHhh
Q 039706 936 RL-IALLTKQIEKS 948 (1166)
Q Consensus 936 kA-LeL~P~~~e~~ 948 (1166)
++ ++++|...+.|
T Consensus 343 ~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 343 ILAKEKDTIRKEYW 356 (382)
T ss_dssp HHHHTTCGGGHHHH
T ss_pred HHHHHhCchhHHHH
Confidence 99 99999887766
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=6.1e-21 Score=203.82 Aligned_cols=197 Identities=16% Similarity=0.062 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
+++++++|.+++..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---------- 74 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---------- 74 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----------
Confidence 4567889999999999999999999999999999999999999999999999999999888887776543
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc-----------cCHHHHHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML-----------RKYEEVIQLCE 756 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l-----------GdyeeAi~~le 756 (1166)
++..+|.++..+ |++++|+..|+
T Consensus 75 ----------------------------------------------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 108 (217)
T 2pl2_A 75 ----------------------------------------------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK 108 (217)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHH
Confidence 333344444443 77777888877
Q ss_pred HHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch
Q 039706 757 QTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV 836 (1166)
Q Consensus 757 kALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~ 836 (1166)
++++++|++.
T Consensus 109 ~al~~~P~~~---------------------------------------------------------------------- 118 (217)
T 2pl2_A 109 DAERVNPRYA---------------------------------------------------------------------- 118 (217)
T ss_dssp HHHHHCTTCH----------------------------------------------------------------------
T ss_pred HHHHhCcccH----------------------------------------------------------------------
Confidence 7777776542
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
..+..+|.++...|++++|+..|+++++++ .++.+++++|.+|..+|++++|+..|+++++++|+++.++..
T Consensus 119 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 190 (217)
T 2pl2_A 119 ---PLHLQRGLVYALLGERDKAEASLKQALALE-----DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVR 190 (217)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 223344777777788888888888888765 356788889999999999999999999999999999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHH
Q 039706 917 RATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~yekAL 938 (1166)
+|.++..+|++++|+..|+++-
T Consensus 191 la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 191 YASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTC---------------
T ss_pred HHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999998888764
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=7.8e-21 Score=210.20 Aligned_cols=271 Identities=10% Similarity=-0.016 Sum_probs=215.6
Q ss_pred CchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 039706 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG 656 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG 656 (1166)
++.|+..+.+++...|++. .+++.+|.++...|++++|+..|+++++++|.+..++..+|.+|..+|
T Consensus 37 ~~~A~~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 37 LAEAALAFEAVCQAAPERE-------------EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 4555556666666555533 455669999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHH
Q 039706 657 EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLE 736 (1166)
Q Consensus 657 d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~ 736 (1166)
++++|+..|++++...|.+......+...... .......+.. +.....|++++|+..+++++...|.+..++.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 176 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVD------IDDLNVQSED-FFFAAPNEYRECRTLLHAALEMNPNDAQLHA 176 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC---------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH------HHHHHHHHHh-HHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 99999999999999999865433322111000 0000000011 0133578899999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039706 737 MKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER 816 (1166)
Q Consensus 737 ~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lek 816 (1166)
.+|.++..+|++++|+..+++++...|.+.. .+..+|.+|...|++++|+..+++
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQ-------------------------LWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------------------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHH-------------------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999875422 246789999999999999999999
Q ss_pred HhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCch------------hHHHHHHHH
Q 039706 817 HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPF------------AAICFCNRA 884 (1166)
Q Consensus 817 Al~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~------------~a~a~~nlA 884 (1166)
++...+ .....+..+|.++...|++++|+.+|++++.+. |. ...+|..+|
T Consensus 232 a~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~l~ 293 (327)
T 3cv0_A 232 ALDINP--------------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ----VGGTTPTGEASREATRSMWDFFR 293 (327)
T ss_dssp HHHHCT--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----TTSCC-----CCTHHHHHHHHHH
T ss_pred HHHcCC--------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CccccccccchhhcCHHHHHHHH
Confidence 754332 235567788999999999999999999999988 55 788999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 885 AAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 885 ~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
.++..+|++++|+..++++++..|+.
T Consensus 294 ~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 294 MLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 99999999999999999988876543
No 31
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.9e-20 Score=213.55 Aligned_cols=311 Identities=12% Similarity=0.048 Sum_probs=233.8
Q ss_pred CCCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHH
Q 039706 575 KGDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAI------DPDFLRVQVRA 648 (1166)
Q Consensus 575 ~~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALel------dP~~~~A~~~L 648 (1166)
..++.|+..+.+++...|++.... ..+|+.+|.+|+..|++++|+..|++++.+ .|....++..+
T Consensus 23 g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVGTEDLKTL---------SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp TCHHHHHHHHHHHHHHCCSCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 345677777777777776643211 245788999999999999999999999987 45567899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCC---------------
Q 039706 649 ANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSND--------------- 713 (1166)
Q Consensus 649 A~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd--------------- 713 (1166)
|.+|..+|++++|+.+|++++.+.|..... ......+...+.++ ...|+
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~~~l~~~~--~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDK--------------VGEARALYNLGNVY--HAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------------HHHHHHHHHHHHHH--HHHHHTCC-------CCCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------------cchHHHHHHHHHHH--HHcCCcccccccchhhhhhh
Confidence 999999999999999999999875542110 00111122222221 23466
Q ss_pred -----HHHHHHHHHHHHHh------CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 714 -----AEIALGVIDEALFI------SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 714 -----~eeALe~lekALel------~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
+++|+.++++++.+ .+....++..+|.+|..+|++++|+.++++++.+.+.....
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------- 223 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-------------- 223 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc--------------
Confidence 89999999999887 34456789999999999999999999999999998764321
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHY 862 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y 862 (1166)
......+..+|.+|...|++++|+.++++++.. ..........+..+..+|.++...|++++|+.+|
T Consensus 224 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 224 -----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLL--------ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 112334677999999999999999999997431 1112223344677888999999999999999999
Q ss_pred HHHHhccccC--CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC------CChHHHHHHHHHHHHHhhCHHHHHHHH
Q 039706 863 TAALSCTVES--HPFAAICFCNRAAAYKALRHITDAIADCNLAIALD------GNYLKAISRRATLYEMIRDYDHAASDF 934 (1166)
Q Consensus 863 ~kALel~~e~--~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld------P~~~~A~~~LA~ay~~lGdyeeAi~~y 934 (1166)
++++.+.+.. .+....++..+|.+|..+|++++|+.++++++++. +....++..+|.+|..+|+...+...+
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 9999886322 34457799999999999999999999999999984 445788999999999999886544444
Q ss_pred HHH
Q 039706 935 HRL 937 (1166)
Q Consensus 935 ekA 937 (1166)
...
T Consensus 371 ~~~ 373 (406)
T 3sf4_A 371 MSE 373 (406)
T ss_dssp ---
T ss_pred HHH
Confidence 433
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.9e-20 Score=209.97 Aligned_cols=262 Identities=11% Similarity=0.047 Sum_probs=210.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHH
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPDF-LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQ 693 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~~-~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~ 693 (1166)
...++..|+|+.|+..++++...+|++ .++.+.++++|+.+|++++|+..++.. +|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~----------------- 65 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL----------------- 65 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhH-----------------
Confidence 345778999999999999988888887 468899999999999999999877541 22211
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccc
Q 039706 694 KVSECMQRSAQLLQNKTSNDAEIALGVIDEALFI--SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 694 ~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel--~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~ 771 (1166)
..+..+..++ ...+++++|+..+++++.. +|.++.+++.+|.+|...|++++|+..|++ |.+.
T Consensus 66 ---~a~~~la~~~--~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~----- 130 (291)
T 3mkr_A 66 ---QAVRMFAEYL--ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL----- 130 (291)
T ss_dssp ---HHHHHHHHHH--HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH-----
T ss_pred ---HHHHHHHHHH--cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH-----
Confidence 1112222222 2478999999999999976 599999999999999999999999999987 3221
Q ss_pred cCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH
Q 039706 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ 851 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~ 851 (1166)
..+..+|.+|..+|++++|+..|++++...+... ...........+..
T Consensus 131 --------------------~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~------------~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 131 --------------------ECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT------------LTQLATAWVSLAAG 178 (291)
T ss_dssp --------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------------HHHHHHHHHHHHHC
T ss_pred --------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH------------HHHHHHHHHHHHhC
Confidence 1245689999999999999999999865443321 01111111233345
Q ss_pred cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHH-H
Q 039706 852 AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDH-A 930 (1166)
Q Consensus 852 ~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyee-A 930 (1166)
.|++++|+.+|+++++.. |.++.+|+++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++.+ |
T Consensus 179 ~~~~~eA~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKC----SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp TTHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred chHHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 589999999999999987 88899999999999999999999999999999999999999999999999999986 5
Q ss_pred HHHHHHHHHHhhhhHHh
Q 039706 931 ASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 931 i~~yekALeL~P~~~e~ 947 (1166)
..++++++++.|++...
T Consensus 255 ~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 255 NRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhCCCChHH
Confidence 68899999999998664
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=4.1e-20 Score=199.87 Aligned_cols=251 Identities=11% Similarity=-0.054 Sum_probs=177.7
Q ss_pred HHHcCChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHH
Q 039706 618 RMALGRMRDALSDCMLAVAID----PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQ 693 (1166)
Q Consensus 618 yl~lG~y~eAI~~fekALeld----P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~ 693 (1166)
+...|++++|+..|+++++.. |.+..+++.+|.+|..+|++++|+.+|+++++++|.+...+..+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l----------- 83 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL----------- 83 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH-----------
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHH-----------
Confidence 334567778888888887763 45567777888888888888888888888888777753322111
Q ss_pred hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccC
Q 039706 694 KVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANG 773 (1166)
Q Consensus 694 ~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g 773 (1166)
+.+ +...|++++|+.+|++++.+.|.+..++..+|.+|..+|++++|+..+++++.+.|.+...
T Consensus 84 ---------a~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~----- 147 (275)
T 1xnf_A 84 ---------GIY--LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR----- 147 (275)
T ss_dssp ---------HHH--HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----
T ss_pred ---------HHH--HHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHH-----
Confidence 111 1236778888888888888888888888888888888888888888888888887754210
Q ss_pred cccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC
Q 039706 774 QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG 853 (1166)
Q Consensus 774 ~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G 853 (1166)
..+..++...|++++|+..+++++...+.. . ....++..+...+
T Consensus 148 ---------------------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~ 191 (275)
T 1xnf_A 148 ---------------------SLWLYLAEQKLDEKQAKEVLKQHFEKSDKE--------------Q-WGWNIVEFYLGNI 191 (275)
T ss_dssp ---------------------HHHHHHHHHHHCHHHHHHHHHHHHHHSCCC--------------S-THHHHHHHHTTSS
T ss_pred ---------------------HHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--------------h-HHHHHHHHHHHhc
Confidence 112223356688888888887764433221 0 0122466677778
Q ss_pred ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
++++|+..+.+++...+...+....+|..+|.+|..+|++++|+..|++++.++|.+...+ +.++..++++++|+..
T Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDD 268 (275)
T ss_dssp CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHH
Confidence 8889999999998876433345578999999999999999999999999999999775443 7788899999999888
Q ss_pred H
Q 039706 934 F 934 (1166)
Q Consensus 934 y 934 (1166)
|
T Consensus 269 ~ 269 (275)
T 1xnf_A 269 L 269 (275)
T ss_dssp -
T ss_pred H
Confidence 7
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.83 E-value=9.7e-20 Score=193.22 Aligned_cols=220 Identities=15% Similarity=0.127 Sum_probs=139.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
.+.+|+.+|.+++..|++++|+..|++++..+|.+..+++.+|.+|..+|++++|+..|++++++.|.+...+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----- 96 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG----- 96 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHH-----
Confidence 345678899999999999999999999999999999999999999999999999999999988877763221111
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCC
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~ 766 (1166)
...+ +...|++++|+..++++++..|.+..++..+|.++..+|++++|+..+++++.+.|.+
T Consensus 97 ---------------la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~- 158 (243)
T 2q7f_A 97 ---------------AGNV--YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND- 158 (243)
T ss_dssp ---------------HHHH--HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-
T ss_pred ---------------HHHH--HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-
Confidence 0111 1124556666666666666666555556666666666666666666665555554421
Q ss_pred CCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhh
Q 039706 767 PPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAG 846 (1166)
Q Consensus 767 ~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG 846 (1166)
...+..+|
T Consensus 159 ------------------------------------------------------------------------~~~~~~l~ 166 (243)
T 2q7f_A 159 ------------------------------------------------------------------------TEARFQFG 166 (243)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 12233456
Q ss_pred HHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh
Q 039706 847 NEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR 925 (1166)
Q Consensus 847 ~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG 925 (1166)
.++...|++++|+..|++++... |....+|..+|.+|..+|++++|+..|+++++++|++..++..++.+....+
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQD----PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 67777778888888888887776 6677788888888888888888888888888888888888888777665443
No 35
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=5e-20 Score=230.51 Aligned_cols=247 Identities=13% Similarity=0.004 Sum_probs=195.5
Q ss_pred hcCCCHHHHHHHHHHHH--------HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCc
Q 039706 709 KTSNDAEIALGVIDEAL--------FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDS 780 (1166)
Q Consensus 709 ~~~gd~eeALe~lekAL--------el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~ 780 (1166)
...+++++|++.|++++ +.+|.+..+++.+|.+|+.+|++++|+..|+++++++|++..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a------------ 469 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL------------ 469 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH------------
Confidence 45899999999999999 8999999999999999999999999999999999999976432
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHH
Q 039706 781 SESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860 (1166)
Q Consensus 781 ~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie 860 (1166)
+..+|.+|..+|++++|+..|++++..++ .....+.++|.++...|+|++ +.
T Consensus 470 -------------~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------------~~~~~~~~lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 470 -------------VWYRAVAELLTGDYDSATKHFTEVLDTFP--------------GELAPKLALAATAELAGNTDE-HK 521 (681)
T ss_dssp -------------HHHHHHHHHHHTCHHHHHHHHHHHHHHST--------------TCSHHHHHHHHHHHHHTCCCT-TC
T ss_pred -------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------CChHHHHHHHHHHHHcCChHH-HH
Confidence 56799999999999999999999855443 335667888999999999999 99
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH-HHHHHHHHH
Q 039706 861 HYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA-ASDFHRLIA 939 (1166)
Q Consensus 861 ~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA-i~~yekALe 939 (1166)
+|++|++++ |.+..+|+++|.+|..+|++++|+.+|++|++++|++..+++++|.+|+..++.++| ...+++|++
T Consensus 522 ~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 597 (681)
T 2pzi_A 522 FYQTVWSTN----DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAAR 597 (681)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHH
T ss_pred HHHHHHHhC----CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 999999998 889999999999999999999999999999999999999999999999888876666 677777777
Q ss_pred HhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhhHHhhhhccCccchhhhcccCCCCCH--HHHHHHHHHHHhcc
Q 039706 940 LLTKQIEKSNQSGVSDRSINLANDLRQARMRLTAVEEEARKDIPLDMYLILGVESSVSV--ADIKRGYRKAALRH 1012 (1166)
Q Consensus 940 L~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~~e~~~rk~~~~dyY~iLGl~~~as~--~eIkkaYrklAlk~ 1012 (1166)
..+..... ..+...+...+..+...+.. ....+||.+||++..... .+|+++||++|..-
T Consensus 598 ~l~~~~~~------~~~~~~l~~~ll~~~l~~~~-------~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~ 659 (681)
T 2pzi_A 598 RVEALPPT------EPRVLQIRALVLGGALDWLK-------DNKASTNHILGFPFTSHGLRLGVEASLRSLARVA 659 (681)
T ss_dssp HHHTSCTT------STTHHHHHHHHHHHHHHHHT-------SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhCCCC------cHHHHHHHHHHHHHHHHHHH-------ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 65443211 11112222233333222221 112349999999766654 77999999999973
No 36
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.81 E-value=5.4e-19 Score=181.40 Aligned_cols=174 Identities=14% Similarity=0.175 Sum_probs=155.4
Q ss_pred ChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHH
Q 039706 730 YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEE 809 (1166)
Q Consensus 730 ~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~ee 809 (1166)
+++.+|+.+|.+|..+|+|++|+..|+++++++|++..+ +..+|.+|..+|++++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------------~~~la~~~~~~~~~~~ 57 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET-------------------------LLKLGKTYMDIGLPND 57 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------------------------HHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------------------------HHHHHHHHHHCCCHHH
Confidence 456789999999999999999999999999998876432 4678999999999999
Q ss_pred HHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH
Q 039706 810 AIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA 889 (1166)
Q Consensus 810 Al~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~ 889 (1166)
|+..++++....+ .....+..+|..+...++++.|+..+.+++.+. |.+..++..+|.+|..
T Consensus 58 a~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~----~~~~~~~~~lg~~~~~ 119 (184)
T 3vtx_A 58 AIESLKKFVVLDT--------------TSAEAYYILGSANFMIDEKQAAIDALQRAIALN----TVYADAYYKLGLVYDS 119 (184)
T ss_dssp HHHHHHHHHHHCC--------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc--------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHH
Confidence 9999998744333 234556677999999999999999999999988 8889999999999999
Q ss_pred hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 890 LRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 890 lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+|++++|+..|+++++++|.++.+|+.+|.+|..+|++++|+..|++|++++|++..
T Consensus 120 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 120 MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 999999999999999999999999999999999999999999999999999998754
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.81 E-value=4.7e-18 Score=185.87 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA----LGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~----lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
+.+++.+|.+|+..|++++|+..|+++++ |++..+++.+|.+|.. .+++++|+.+|+++++++
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----------- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----------- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----------
Confidence 44566677788888888888888888777 6677778888888877 777777777777766532
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH----ccCHHHHHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFM----LRKYEEVIQLCEQTF 759 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~----lGdyeeAi~~lekAL 759 (1166)
++.++..+|.+|.. .+++++|+.+|++++
T Consensus 73 -----------------------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 105 (273)
T 1ouv_A 73 -----------------------------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC 105 (273)
T ss_dssp -----------------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred -----------------------------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH
Confidence 34455566666666 667777777776666
Q ss_pred HhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHhcCCCCchhhhhhhhccc
Q 039706 760 HFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT----LGRLEEAIAALERHESGNGGKMLESLIPLAGT 835 (1166)
Q Consensus 760 el~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~----lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~ 835 (1166)
+.. +. ..+..+|.+|.. .+++++|+.+|++++...
T Consensus 106 ~~~--~~-------------------------~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------- 144 (273)
T 1ouv_A 106 DLK--YA-------------------------EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-------------- 144 (273)
T ss_dssp HTT--CH-------------------------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------------
T ss_pred HcC--Cc-------------------------cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--------------
Confidence 542 10 113456666666 677777777777653311
Q ss_pred hHHHHHHhhhhHHHHH----cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhC
Q 039706 836 VRELLCRKSAGNEAFQ----AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA----LRHITDAIADCNLAIALD 907 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~----~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeld 907 (1166)
....+..+|.++.. .+++++|+.+|+++++.. .+.+++++|.+|.. .+++++|+.+|+++++..
T Consensus 145 --~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 145 --DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred --cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 13345566777777 888888888888888753 45788889999999 899999999999999886
Q ss_pred CChHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 908 GNYLKAISRRATLYEM----IRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~----lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
| +.+++.+|.+|.. .+++++|+.+|++++++.|.....
T Consensus 217 ~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 217 N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 6 7888999999998 899999999999999887776553
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.6e-18 Score=184.75 Aligned_cols=207 Identities=15% Similarity=0.155 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF-------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQK 680 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~-------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~ 680 (1166)
..+|+++|.+|+.+|++++|+..|++++.++|.. ..++..+|.+|..+|++++|+.+|++++.+.|...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---- 113 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD---- 113 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH----
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH----
Confidence 4667889999999999999999999999999887 79999999999999999999999999999988610
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 039706 681 IAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFH 760 (1166)
Q Consensus 681 ~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALe 760 (1166)
. ....+++++|+..+++++...|....++..+|.++..+|++++|+..+++++.
T Consensus 114 -----------------~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 114 -----------------I---------LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167 (258)
T ss_dssp -----------------H---------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------H---------HHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 0 11246788899999999999999889999999999999999999999999888
Q ss_pred hccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHH
Q 039706 761 FAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELL 840 (1166)
Q Consensus 761 l~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~ 840 (1166)
+.|.+. .
T Consensus 168 ~~~~~~-------------------------------------------------------------------------~ 174 (258)
T 3uq3_A 168 RAPEDA-------------------------------------------------------------------------R 174 (258)
T ss_dssp HCTTCH-------------------------------------------------------------------------H
T ss_pred cCcccH-------------------------------------------------------------------------H
Confidence 776431 1
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC------CChHHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD------GNYLKAI 914 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld------P~~~~A~ 914 (1166)
.+..+|.++...|++++|+.+|++++.++ |....+|+.+|.+|..+|++++|+..|+++++++ |.+..++
T Consensus 175 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~ 250 (258)
T 3uq3_A 175 GYSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHH
Confidence 12334667777777888888888888777 7778889999999999999999999999999998 8888888
Q ss_pred HHHHHHH
Q 039706 915 SRRATLY 921 (1166)
Q Consensus 915 ~~LA~ay 921 (1166)
..++.++
T Consensus 251 ~~l~~~~ 257 (258)
T 3uq3_A 251 QLYYKAS 257 (258)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 7776653
No 39
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=4.7e-17 Score=194.38 Aligned_cols=327 Identities=14% Similarity=0.006 Sum_probs=183.3
Q ss_pred hCcchhHHHHHHHHHhchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHH
Q 039706 590 QEPNLASAETIAAQEACEKWRLSNRAATRMA----LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA----LGEIEDA 661 (1166)
Q Consensus 590 ~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~----lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~----lGd~eeA 661 (1166)
.++..|..++..|++...+.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.||.+|.. .+++++|
T Consensus 57 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A 134 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAES 134 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3344445555555555555566666666666 66666666666666553 355666666666666 5566666
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHH----hhhHHhHHHHHHH------------HHHHHHh--hcCCCHHHHHHHHHH
Q 039706 662 SKYFRMCLQSGSDVCVDQKIAVEASDG----LQKAQKVSECMQR------------SAQLLQN--KTSNDAEIALGVIDE 723 (1166)
Q Consensus 662 l~~fekALel~P~n~~a~~~l~Ea~~~----L~k~~~~~e~~~~------------a~~~l~~--~~~gd~eeALe~lek 723 (1166)
+.+|+++++.+ +......+..++.. ..+..++..++.. ++.++.. ...+++++|+.+|++
T Consensus 135 ~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 135 VKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 66666665542 23333333333322 1112222222211 1111110 014566666666666
Q ss_pred HHHhCCChHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhccCCCCCccccCccccc----Cccchhhhhhh------
Q 039706 724 ALFISSYSEKLLEMKAEALFM----LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL----DSSESTKHVSF------ 789 (1166)
Q Consensus 724 ALel~P~~~~al~~lA~~y~~----lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l----d~~~~~~~~~~------ 789 (1166)
+++. .++.++..+|.+|.. .+++++|+.+|+++++... ..+...++.++.. .........++
T Consensus 213 a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 213 SATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN--SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 6554 245566666666665 5666666666666655421 1111111100000 00000000000
Q ss_pred -hhHHHHHHHHHHHHc-----CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC---ChHHHHH
Q 039706 790 -RLWRCCLIFKSYFTL-----GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG---RHSEAVE 860 (1166)
Q Consensus 790 -~~wr~~lLA~ay~~l-----Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G---~yeEAie 860 (1166)
....+..+|.+|... +++++|+.+|+++... .....+..+|.+|...| ++++|+.
T Consensus 289 ~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----------------~~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 289 GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----------------GDATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 001134466666665 6666666666665321 12345566788887755 7888888
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH----hhCHHHHHH
Q 039706 861 HYTAALSCTVESHPFAAICFCNRAAAYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEM----IRDYDHAAS 932 (1166)
Q Consensus 861 ~y~kALel~~e~~p~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~----lGdyeeAi~ 932 (1166)
+|+++++. .++.+++++|.+|.. .+++++|+.+|++|++.. ++.+++.+|.+|.. .+++++|+.
T Consensus 353 ~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 353 WFRKAAAK------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88888874 356788888888888 788888888888888764 57888888888888 788888888
Q ss_pred HHHHHHHHh---hhhHHhh
Q 039706 933 DFHRLIALL---TKQIEKS 948 (1166)
Q Consensus 933 ~yekALeL~---P~~~e~~ 948 (1166)
+|+++++.. |.+....
T Consensus 425 ~~~~A~~~~~~~~~~~~a~ 443 (490)
T 2xm6_A 425 WFDTASTNDMNLFGTENRN 443 (490)
T ss_dssp HHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHCCCCCcCCHHHH
Confidence 888888887 4354443
No 40
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.80 E-value=1e-17 Score=184.24 Aligned_cols=258 Identities=16% Similarity=0.150 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 039706 643 RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVID 722 (1166)
Q Consensus 643 ~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~le 722 (1166)
..++.+|.++...|++++|+.+|++++++.|.+.... ...+...+.. +...|++++|+.+++
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------~~~~~~l~~~--~~~~g~~~~A~~~~~ 67 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL----------------SAIYSQLGNA--YFYLHDYAKALEYHH 67 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHH----------------HHHHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHH----------------HHHHHHHHHH--HHHcCCHHHHHHHHH
Confidence 4678889999999999999999999999998853211 1111222222 234899999999999
Q ss_pred HHHHh------CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHH
Q 039706 723 EALFI------SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCL 796 (1166)
Q Consensus 723 kALel------~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~l 796 (1166)
+++.+ .|....++..+|.+|..+|++++|+..+++++.+.+..... ....+.+..
T Consensus 68 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~~~~~~~~ 128 (338)
T 3ro2_A 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------VGEARALYN 128 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------HHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-------------------hHHHHHHHH
Confidence 99887 44557889999999999999999999999999988754321 112334577
Q ss_pred HHHHHHHcCC--------------------HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChH
Q 039706 797 IFKSYFTLGR--------------------LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHS 856 (1166)
Q Consensus 797 LA~ay~~lGd--------------------~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~ye 856 (1166)
+|.+|...|+ +++|+.++++++. ...........+..+..+|.++...|+++
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (338)
T 3ro2_A 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS--------LVTALGDRAAQGRAFGNLGNTHYLLGNFR 200 (338)
T ss_dssp HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH--------HHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH--------HHHhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999 9999999988632 12222334455677888999999999999
Q ss_pred HHHHHHHHHHhcccc--CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHhhCHH
Q 039706 857 EAVEHYTAALSCTVE--SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY------LKAISRRATLYEMIRDYD 928 (1166)
Q Consensus 857 EAie~y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~------~~A~~~LA~ay~~lGdye 928 (1166)
+|+.+|++++.+.+. ..+....++.++|.+|..+|++++|+..+++++.+.+.. ..++..+|.+|..+|+++
T Consensus 201 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (338)
T 3ro2_A 201 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 280 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHH
Confidence 999999999987632 223445689999999999999999999999999987655 778999999999999999
Q ss_pred HHHHHHHHHHHHhhhhH
Q 039706 929 HAASDFHRLIALLTKQI 945 (1166)
Q Consensus 929 eAi~~yekALeL~P~~~ 945 (1166)
+|+..|++++++.+...
T Consensus 281 ~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 281 KAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999987653
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.80 E-value=3e-18 Score=197.40 Aligned_cols=261 Identities=14% Similarity=0.133 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHH
Q 039706 639 PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIAL 718 (1166)
Q Consensus 639 P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeAL 718 (1166)
+.....++.+|.++...|++++|+.+|++++++.|.+..... .++...+.. +...|++++|+
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------~~~~~lg~~--~~~~g~~~~A~ 106 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLS----------------AIYSQLGNA--YFYLGDYNKAM 106 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHH----------------HHHHHHHHH--HHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHH----------------HHHHHHHHH--HHHCCCHHHHH
Confidence 344567889999999999999999999999999988543111 111122222 22479999999
Q ss_pred HHHHHHHHh------CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhH
Q 039706 719 GVIDEALFI------SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLW 792 (1166)
Q Consensus 719 e~lekALel------~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~w 792 (1166)
.++++++.+ .|....++..+|.+|..+|++++|+.++++++.+.+.... ......
T Consensus 107 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------~~~~~~ 167 (411)
T 4a1s_A 107 QYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-------------------RLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------HHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-------------------hHHHHH
Confidence 999999988 5677889999999999999999999999999988654211 011233
Q ss_pred HHHHHHHHHHHcCC-----------------HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCCh
Q 039706 793 RCCLIFKSYFTLGR-----------------LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855 (1166)
Q Consensus 793 r~~lLA~ay~~lGd-----------------~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~y 855 (1166)
.+..+|.+|...|+ +++|+.++++++. ....+......+..+..+|.+++..|++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK--------LMRDLGDRGAQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH--------HHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 45779999999999 9999999988632 2222333455677888999999999999
Q ss_pred HHHHHHHHHHHhcccc--CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHhhCH
Q 039706 856 SEAVEHYTAALSCTVE--SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY------LKAISRRATLYEMIRDY 927 (1166)
Q Consensus 856 eEAie~y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~------~~A~~~LA~ay~~lGdy 927 (1166)
++|+.+|++++.+.+. .......++.++|.+|..+|++++|+.+|++++.+.+.. ..++..+|.+|..+|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999998732 122334589999999999999999999999999998743 78899999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 039706 928 DHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~ 944 (1166)
++|+.+|++++++.+..
T Consensus 320 ~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 320 NTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC
Confidence 99999999999997765
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=1.5e-17 Score=173.52 Aligned_cols=209 Identities=14% Similarity=0.001 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+|+.+|.+++..|++++|+..|+++++++|.+..++..+|.+|..+|++++|+.+|++++.+.|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------- 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD------------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------------
Confidence 3456667888888888888888888888888888888888888887777777777777776655443
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML-RKYEEVIQLCEQTFHFAEKNS 766 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l-GdyeeAi~~lekALel~p~n~ 766 (1166)
+..++..+|.++..+ |++++|+..+++++. .|..+
T Consensus 75 -------------------------------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~ 110 (225)
T 2vq2_A 75 -------------------------------------------SAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYP 110 (225)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCS
T ss_pred -------------------------------------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCc
Confidence 344556677777778 888888888877776 22211
Q ss_pred CCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhh
Q 039706 767 PPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAG 846 (1166)
Q Consensus 767 ~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG 846 (1166)
. ....+..+|
T Consensus 111 ~----------------------------------------------------------------------~~~~~~~l~ 120 (225)
T 2vq2_A 111 T----------------------------------------------------------------------PYIANLNKG 120 (225)
T ss_dssp C----------------------------------------------------------------------HHHHHHHHH
T ss_pred c----------------------------------------------------------------------hHHHHHHHH
Confidence 1 112223346
Q ss_pred HHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHhh
Q 039706 847 NEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG-NYLKAISRRATLYEMIR 925 (1166)
Q Consensus 847 ~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP-~~~~A~~~LA~ay~~lG 925 (1166)
.++...|++++|+.+|++++... |.+..++..+|.++..+|++++|+..+++++.+.| .+..++..++.++...|
T Consensus 121 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 121 ICSAKQGQFGLAEAYLKRSLAAQ----PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC----CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 66666777777777777777766 66677888888888888888888888888888888 88888888888888888
Q ss_pred CHHHHHHHHHHHHHHhhhhHHh
Q 039706 926 DYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 926 dyeeAi~~yekALeL~P~~~e~ 947 (1166)
++++|...++.++++.|++...
T Consensus 197 ~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 197 NAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHH
Confidence 8888888888888887776553
No 43
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=5.5e-18 Score=189.96 Aligned_cols=245 Identities=11% Similarity=-0.012 Sum_probs=199.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCchhHHHHHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS--GSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel--~P~n~~a~~~l~Ea~~~ 688 (1166)
.+.++.+|+.+|++++|+..++. .+|....++..++..|...+++++|++.|++++.. +|++...+..+
T Consensus 37 ~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~l------ 107 (291)
T 3mkr_A 37 DVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMA------ 107 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHH------
T ss_pred HHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHH------
Confidence 34478999999999999998876 36777889999999999999999999999999875 58864322211
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
+.+ +...|++++|+..|++ |.++.++..+|.+|..+|++++|+..+++++..+|+...
T Consensus 108 --------------a~~--~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~- 165 (291)
T 3mkr_A 108 --------------ASI--YFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL- 165 (291)
T ss_dssp --------------HHH--HHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-
T ss_pred --------------HHH--HHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH-
Confidence 111 2247999999999988 899999999999999999999999999999999875310
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHH----HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhh
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIF----KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKS 844 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA----~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~ 844 (1166)
..++ ..+...|++++|+..|++++... +.....+..
T Consensus 166 --------------------------~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--------------p~~~~~~~~ 205 (291)
T 3mkr_A 166 --------------------------TQLATAWVSLAAGGEKLQDAYYIFQEMADKC--------------SPTLLLLNG 205 (291)
T ss_dssp --------------------------HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--------------CCCHHHHHH
T ss_pred --------------------------HHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--------------CCcHHHHHH
Confidence 1122 22334589999999999974433 334667888
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH-HHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD-AIADCNLAIALDGNYLKAISRRATLYEM 923 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee-Ai~~lekALeldP~~~~A~~~LA~ay~~ 923 (1166)
+|.++...|++++|+..|+++|.++ |.++.+|.++|.++..+|++.+ |..+++++++++|+++.+.- +..+
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~----p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~ 277 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKD----SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAK 277 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHH
Confidence 9999999999999999999999998 9999999999999999999987 56899999999999987653 4566
Q ss_pred hhCHHHHHHHH
Q 039706 924 IRDYDHAASDF 934 (1166)
Q Consensus 924 lGdyeeAi~~y 934 (1166)
.+.|++|+.-|
T Consensus 278 ~~~fd~~~~~~ 288 (291)
T 3mkr_A 278 ENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66677666655
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.80 E-value=5.4e-18 Score=173.93 Aligned_cols=171 Identities=14% Similarity=0.162 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
+..|+++|.+|..+|+|++|+..|+++|+++|++..++..+|.+|..+|++++|+..+.+++...|.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------------- 71 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------------- 71 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-------------
Confidence 4568889999999999999999999999999999999999999999999999998888887766555
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
...++..+|.++...++++.|+..+.+++.+.|.+..
T Consensus 72 -------------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 108 (184)
T 3vtx_A 72 -------------------------------------------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYAD 108 (184)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -------------------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 3445556667777777777777777777766654311
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
.+..+|.
T Consensus 109 -------------------------------------------------------------------------~~~~lg~ 115 (184)
T 3vtx_A 109 -------------------------------------------------------------------------AYYKLGL 115 (184)
T ss_dssp -------------------------------------------------------------------------HHHHHHH
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1122355
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
++...|++++|++.|+++++++ |.++.+|+++|.+|..+|++++|+.+|++||+++|+++
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 116 VYDSMGEHDKAIEAYEKTISIK----PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHhCCchhHHHHHHHHHHhc----chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 6666666666666777777666 66677777777777777777777777777777777654
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=4.3e-18 Score=182.51 Aligned_cols=209 Identities=18% Similarity=0.098 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+|+.+|.+|+..|++++|+..|++++.++|.+..+++.+|.+|...|++++|+.+|++++++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------
Confidence 46678888888888888888888888888888888888888888888887777777777665543
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
|.+..++..+|.+|..+|++++|+.++++++. .+..
T Consensus 102 -----------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~-- 137 (252)
T 2ho1_A 102 -----------------------------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLY-- 137 (252)
T ss_dssp -----------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTC--
T ss_pred -----------------------------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccC--
Confidence 33455677788888888888888888877765 1111
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
+.....+..+|.
T Consensus 138 --------------------------------------------------------------------~~~~~~~~~la~ 149 (252)
T 2ho1_A 138 --------------------------------------------------------------------PERSRVFENLGL 149 (252)
T ss_dssp --------------------------------------------------------------------TTHHHHHHHHHH
T ss_pred --------------------------------------------------------------------cccHHHHHHHHH
Confidence 011222334577
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
++...|++++|+.+|++++.+. |....++..+|.+|..+|++++|+..+++++...|.+..++..++.+|..+|++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLN----RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR 225 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH
Confidence 7777888888888888888877 677888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHh
Q 039706 928 DHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 928 eeAi~~yekALeL~P~~~e~ 947 (1166)
++|+..+++++++.|++...
T Consensus 226 ~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 226 DTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHHHHCCCCHHH
Confidence 99999999999998887653
No 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=8.1e-19 Score=210.11 Aligned_cols=216 Identities=11% Similarity=0.020 Sum_probs=183.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHH
Q 039706 622 GRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEI-EDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQ 700 (1166)
Q Consensus 622 G~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~-eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~ 700 (1166)
.++++|+..+.+++...|....+++.+|.+|..+|++ ++|+.+|+++++++|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p--------------------------- 134 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP--------------------------- 134 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT---------------------------
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC---------------------------
Confidence 3467777778877778888888888888888888888 888887777666554
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCc
Q 039706 701 RSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDS 780 (1166)
Q Consensus 701 ~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~ 780 (1166)
.++.++..+|.+|..+|++++|+.+|+++++++|+ .
T Consensus 135 -----------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~-------------- 170 (474)
T 4abn_A 135 -----------------------------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K-------------- 170 (474)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--------------
T ss_pred -----------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--------------
Confidence 45567788899999999999999999999988764 1
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHc---------CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH
Q 039706 781 SESTKHVSFRLWRCCLIFKSYFTL---------GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ 851 (1166)
Q Consensus 781 ~~~~~~~~~~~wr~~lLA~ay~~l---------Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~ 851 (1166)
..+..+|.+|..+ |++++|+..|++++... +.....+..+|.+|..
T Consensus 171 -----------~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~ 225 (474)
T 4abn_A 171 -----------VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------------VLDGRSWYILGNAYLS 225 (474)
T ss_dssp -----------HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHH
Confidence 1245688888888 99999999999985433 3345677888999999
Q ss_pred c--------CChHHHHHHHHHHHhccccCCc---hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 852 A--------GRHSEAVEHYTAALSCTVESHP---FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 852 ~--------G~yeEAie~y~kALel~~e~~p---~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
. |++++|+.+|++|+.++ | .++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.+
T Consensus 226 ~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 301 (474)
T 4abn_A 226 LYFNTGQNPKISQQALSAYAQAEKVD----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL 301 (474)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHC----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhccccchHHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9 99999999999999998 7 8999999999999999999999999999999999999999999999
Q ss_pred HHHhhCHHHHHHHHHHH
Q 039706 921 YEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 921 y~~lGdyeeAi~~yekA 937 (1166)
+..+|++++|+..+.++
T Consensus 302 ~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 302 LEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999876543
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.79 E-value=2.5e-17 Score=177.91 Aligned_cols=249 Identities=13% Similarity=-0.015 Sum_probs=192.2
Q ss_pred CchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 039706 577 DRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG 656 (1166)
Q Consensus 577 ~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG 656 (1166)
++.|+..+.++++..+... +....+|+.+|.+|+..|++++|+..|++++.++|.+..++..+|.+|..+|
T Consensus 21 ~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 21 QEVILARMEQILASRALTD---------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccccC---------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc
Confidence 4556666666655432111 1234567889999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHH
Q 039706 657 EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLE 736 (1166)
Q Consensus 657 d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~ 736 (1166)
++++|+.+|+++++++|.+...+..+ +.+ +...|++++|+..|++++.+.|.+.....
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~l--------------------a~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNR--------------------GIA--LYYGGRDKLAQDDLLAFYQDDPNDPFRSL 149 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHH--------------------HHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHH--------------------HHH--HHHhccHHHHHHHHHHHHHhCCCChHHHH
Confidence 99999999999999999864322221 111 22479999999999999999999987776
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039706 737 MKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER 816 (1166)
Q Consensus 737 ~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lek 816 (1166)
..+.+ ...|++++|+..+.+++...|.+.. ...++.++...++.++|+..+++
T Consensus 150 ~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 150 WLYLA-EQKLDEKQAKEVLKQHFEKSDKEQW--------------------------GWNIVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp HHHHH-HHHHCHHHHHHHHHHHHHHSCCCST--------------------------HHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHH-HHhcCHHHHHHHHHHHHhcCCcchH--------------------------HHHHHHHHHHhcCHHHHHHHHHH
Confidence 66544 6779999999999999998775432 12366778888999999999998
Q ss_pred HhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHH
Q 039706 817 HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896 (1166)
Q Consensus 817 Al~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeA 896 (1166)
++...+. ..+.....+..+|.++...|++++|+.+|++++.++ |.+.. ..+.++..+|++++|
T Consensus 203 ~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~---~~~~~~~~l~~~~~a 265 (275)
T 1xnf_A 203 DATDNTS----------LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN----VHNFV---EHRYALLELSLLGQD 265 (275)
T ss_dssp HCCSHHH----------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CTTCH---HHHHHHHHHHHHHHC
T ss_pred Hhccccc----------ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----chhHH---HHHHHHHHHHHHHhh
Confidence 7332111 122336778889999999999999999999999987 54433 347789999999999
Q ss_pred HHHH
Q 039706 897 IADC 900 (1166)
Q Consensus 897 i~~l 900 (1166)
+..|
T Consensus 266 ~~~~ 269 (275)
T 1xnf_A 266 QDDL 269 (275)
T ss_dssp ----
T ss_pred HHHH
Confidence 9988
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=1.9e-18 Score=187.20 Aligned_cols=240 Identities=11% Similarity=-0.026 Sum_probs=168.3
Q ss_pred CCchhHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHH
Q 039706 576 GDRNSEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF----LRVQVRAANC 651 (1166)
Q Consensus 576 ~~~~a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~----~~A~~~LA~l 651 (1166)
.++.|+..+.++++.+|++.. +++++|.+|+.+|++++|+..|++++. .|.+ ..+|..+|.+
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~-------------~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPY-------------IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCST-------------THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHH-------------HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 456666667777766666543 456699999999999999999999999 4433 5669999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh
Q 039706 652 HLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS 731 (1166)
Q Consensus 652 yl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~ 731 (1166)
|..+|++++|+.+|+++++++|.+...+..+ +.+ +...|++++|+.+|++++.+.|.+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l--------------------~~~--~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI--------------------GSY--FYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH--------------------HHH--HHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHH--------------------HHH--HHHccCHHHHHHHHHHHhhcCCCc
Confidence 9999999999999999998888753321111 111 123567777777777777777777
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHH
Q 039706 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAI 811 (1166)
Q Consensus 732 ~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl 811 (1166)
+.++..+|..++..+++++|+..+++++++.|.+
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---------------------------------------------- 175 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI---------------------------------------------- 175 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc----------------------------------------------
Confidence 7777777744444457777777777776666543
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCC---hHHHHHHHHHHHhccccCC----chhHHHHHHHH
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGR---HSEAVEHYTAALSCTVESH----PFAAICFCNRA 884 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~---yeEAie~y~kALel~~e~~----p~~a~a~~nlA 884 (1166)
...+..+|.++...++ +++|+..|++++++..... .....+|..+|
T Consensus 176 ---------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 176 ---------------------------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp ---------------------------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred ---------------------------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 1222333555555566 7777777777777642111 12347889999
Q ss_pred HHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 885 AAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 885 ~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
.+|..+|++++|+.+|+++++++|++..++-.++.+....
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 9999999999999999999999999999999888776543
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.78 E-value=3.7e-17 Score=175.22 Aligned_cols=197 Identities=12% Similarity=-0.028 Sum_probs=150.4
Q ss_pred hhCcchhHHHHHHHHHhch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 039706 589 KQEPNLASAETIAAQEACE--KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFR 666 (1166)
Q Consensus 589 k~ep~~A~a~~~aAIe~~e--~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fe 666 (1166)
..+++.|...+..+++..+ ..+++.+|.+|...|++++|+..|+++++++|.+..++..+|.+|..+|++++|+.+|+
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 129 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456778888888887654 57799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc
Q 039706 667 MCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR 746 (1166)
Q Consensus 667 kALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG 746 (1166)
+++. .+ ..|....++..+|.++..+|
T Consensus 130 ~~~~-~~-----------------------------------------------------~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 130 EASQ-DT-----------------------------------------------------LYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHTT-CT-----------------------------------------------------TCTTHHHHHHHHHHHHHHTT
T ss_pred HHHh-Cc-----------------------------------------------------cCcccHHHHHHHHHHHHHcC
Confidence 8876 11 22344566777888888888
Q ss_pred CHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh
Q 039706 747 KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML 826 (1166)
Q Consensus 747 dyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l 826 (1166)
++++|+..+++++...|.+..
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~----------------------------------------------------------- 176 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQPS----------------------------------------------------------- 176 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCHH-----------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhcCcccHH-----------------------------------------------------------
Confidence 888888888888877664311
Q ss_pred hhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 827 ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 827 e~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
.+..+|.++...|++++|+.+|++++... |....++..++.++..+|++++|+..+++++++
T Consensus 177 --------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 177 --------------VALEMADLLYKEREYVPARQYYDLFAQGG----GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp --------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11223555556666666666666666655 556667777777777777777777777777777
Q ss_pred CCChHHHHHH
Q 039706 907 DGNYLKAISR 916 (1166)
Q Consensus 907 dP~~~~A~~~ 916 (1166)
.|+++.++..
T Consensus 239 ~p~~~~~~~~ 248 (252)
T 2ho1_A 239 YPGSLEYQEF 248 (252)
T ss_dssp CTTSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 7777665543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=2.9e-18 Score=181.84 Aligned_cols=197 Identities=10% Similarity=0.005 Sum_probs=171.8
Q ss_pred hcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhh
Q 039706 709 KTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVS 788 (1166)
Q Consensus 709 ~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~ 788 (1166)
...|++++|+..|++++...|.+..++..+|.++..+|++++|+..+++++.+.|.+.
T Consensus 34 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------------- 91 (243)
T 2q7f_A 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA---------------------- 91 (243)
T ss_dssp --------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------------------
T ss_pred HHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch----------------------
Confidence 3579999999999999999999999999999999999999999999999999977542
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhc
Q 039706 789 FRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSC 868 (1166)
Q Consensus 789 ~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel 868 (1166)
..+..+|.+|...|++++|+..+++++...+. ....+..+|.++...|++++|+.+|++++.+
T Consensus 92 ---~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 92 ---TAYYGAGNVYVVKEMYKEAKDMFEKALRAGME--------------NGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC--------------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 12466899999999999999999997543332 2445777899999999999999999999998
Q ss_pred cccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 869 TVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 869 ~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
. |....++..+|.++..+|++++|+..+++++.++|.++.++..+|.+|..+|++++|+..|++++++.|++....
T Consensus 155 ~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 155 N----ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp C----TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred C----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 8 778899999999999999999999999999999999999999999999999999999999999999999887654
No 51
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=4.3e-18 Score=196.04 Aligned_cols=259 Identities=11% Similarity=0.019 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAI------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALel------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
..++.+|..++..|+|++|+..|++|+.+ .+..+.++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------- 176 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH------- 176 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------
Confidence 34566999999999999999999999987 23356889999999999999999999999988754331
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 039706 683 VEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA 762 (1166)
Q Consensus 683 ~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~ 762 (1166)
+++ .+....++..+|.+|..+|++++|+.++++++.+.
T Consensus 177 -----------------------------~~~-------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 214 (383)
T 3ulq_A 177 -----------------------------EAY-------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMA 214 (383)
T ss_dssp -----------------------------STT-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------ccc-------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 110 01123567889999999999999999999999987
Q ss_pred cCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHH
Q 039706 763 EKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCR 842 (1166)
Q Consensus 763 p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l 842 (1166)
+..... ......+..+|.+|..+|++++|+.++++++.. .......+..+..+
T Consensus 215 ~~~~~~-------------------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 215 EAEKQP-------------------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV--------FEESNILPSLPQAY 267 (383)
T ss_dssp HHTTCH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHTTCGGGHHHHH
T ss_pred HHcCCh-------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------HHhhccchhHHHHH
Confidence 754321 112334577999999999999999999997431 11112224557788
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhcccc-CCchhHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVE-SHPFAAICFCNRAAAYKALRH---ITDAIADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e-~~p~~a~a~~nlA~ay~~lGq---~eeAi~~lekALeldP~~~~A~~~LA 918 (1166)
..+|.++...|++++|+.+|++++.+.+. ..+.....+..+|.+|...|+ +.+|+..++++ ...|....++..+|
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la 346 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 89999999999999999999999987532 124444456789999999998 88888888876 44456677899999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.+|..+|++++|+.+|++++++..+.
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999886543
No 52
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=6.5e-18 Score=185.29 Aligned_cols=260 Identities=15% Similarity=0.034 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAI--------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALel--------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
+|+.+|.+|+..|++++|+..|++++++ .|....++..+|.+|..+|++++|+.+|++++.+...
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------- 101 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK------- 101 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------
Confidence 4566999999999999999999999995 6777899999999999999999999999998763100
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 039706 682 AVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEAL-FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFH 760 (1166)
Q Consensus 682 l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekAL-el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALe 760 (1166)
.. ...|....++..+|.+|..+|++++|+.++++++.
T Consensus 102 ------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 139 (311)
T 3nf1_A 102 ------------------------------------------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 139 (311)
T ss_dssp ------------------------------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred ------------------------------------------HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 00 01233456788899999999999999999999998
Q ss_pred hccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh--ccchHH
Q 039706 761 FAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL--AGTVRE 838 (1166)
Q Consensus 761 l~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L--~~~~~~ 838 (1166)
+....... +. ....+.+..+|.+|...|++++|+.++++++.. .... ...+..
T Consensus 140 ~~~~~~~~----------~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~ 194 (311)
T 3nf1_A 140 IREKVLGK----------DH-------PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI--------YQTKLGPDDPNV 194 (311)
T ss_dssp HHHHHHCT----------TC-------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------HHHTSCTTCHHH
T ss_pred HHHHhcCC----------CC-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHhCCCCHHH
Confidence 75221000 00 112234567999999999999999999997431 1111 124456
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc-----CCch------hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE-----SHPF------AAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e-----~~p~------~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
...+..+|.++...|++++|+.+|++++.+.+. ..+. ....+..++..+...+.+.+|+..+.+++...
T Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 274 (311)
T 3nf1_A 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS 274 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC
Confidence 777888999999999999999999999986421 1122 23344445555667778888999999999999
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
|..+.++..+|.+|..+|++++|+..|++++++.|+
T Consensus 275 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998765
No 53
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=2.8e-17 Score=174.79 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDP-DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP-~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
++.+|+++|.+++..|+|++|+..|+++++++| .+..+++.+|.++..+|++++|+.+|+++++++|
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------ 73 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY------------ 73 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc------------
Confidence 346778888889999999999999999998888 8888888888888888888888888877665554
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
.+..++..+|.+|..+|++++|+..+++++++.|++
T Consensus 74 --------------------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 74 --------------------------------------------NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN 109 (228)
T ss_dssp --------------------------------------------SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred --------------------------------------------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 455677888999999999999999999999998865
No 54
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=3.5e-18 Score=182.37 Aligned_cols=175 Identities=18% Similarity=0.176 Sum_probs=126.6
Q ss_pred ChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHH
Q 039706 730 YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEE 809 (1166)
Q Consensus 730 ~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~ee 809 (1166)
.++.++..+|.++...|++++|+..|+++++++|++..+ +..+|.++...|++++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-------------------------~~~lg~~~~~~g~~~~ 57 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA-------------------------LYWLARTQLKLGLVNP 57 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH-------------------------HHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------------------------HHHHHHHHHHcCCHHH
Confidence 334445555555555555555555555555554443221 2334555555555555
Q ss_pred HHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc-----------CChHHHHHHHHHHHhccccCCchhHH
Q 039706 810 AIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA-----------GRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 810 Al~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~-----------G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
|+..|++++... +.....+..+|.++... |++++|+..|+++++++ |.++.
T Consensus 58 A~~~~~~al~~~--------------P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----P~~~~ 119 (217)
T 2pl2_A 58 ALENGKTLVART--------------PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN----PRYAP 119 (217)
T ss_dssp HHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC----TTCHH
T ss_pred HHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC----cccHH
Confidence 555555542221 22233344445555555 99999999999999998 88999
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+|+++|.+|..+|++++|+..|+++++++ +++.+++.+|.+|..+|++++|+..|++++++.|++....
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 188 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999999999999999 9999999999999999999999999999999999887654
No 55
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.77 E-value=1.2e-16 Score=182.57 Aligned_cols=292 Identities=14% Similarity=0.024 Sum_probs=220.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFL-----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~-----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
.++..+|.+++..|++++|+..+++++...|... .++..+|.+|...|++++|+..+++++.+.|......
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 90 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH---- 90 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH----
Confidence 4467789999999999999999999999887552 3688999999999999999999999998754321110
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC--------CChHHHHHHHHHHHHHccCHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS--------SYSEKLLEMKAEALFMLRKYEEVIQLC 755 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~--------P~~~~al~~lA~~y~~lGdyeeAi~~l 755 (1166)
.......... ..+...|++++|+.++++++.+. |....++..+|.++..+|++++|+.++
T Consensus 91 ----------~~~~~~~~la--~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (373)
T 1hz4_A 91 ----------YALWSLIQQS--EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 158 (373)
T ss_dssp ----------HHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------HHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 0001111111 12335899999999999999875 345677888999999999999999999
Q ss_pred HHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccc
Q 039706 756 EQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGT 835 (1166)
Q Consensus 756 ekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~ 835 (1166)
++++.+.+..... . ....+..+|.++...|++++|+.++++++....... . ..
T Consensus 159 ~~al~~~~~~~~~-------------~-------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~------~-~~ 211 (373)
T 1hz4_A 159 RSGIEVLSSYQPQ-------------Q-------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK------Y-HS 211 (373)
T ss_dssp HHHHHHTTTSCGG-------------G-------GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC------C-CH
T ss_pred HHHHHHhhccCcH-------------H-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC------c-ch
Confidence 9999987753211 0 112356789999999999999999999753211100 0 00
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC------
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN------ 909 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~------ 909 (1166)
.........++.++...|++++|+.++.+++...+.........+..+|.++..+|++++|+..+++++...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 291 (373)
T 1hz4_A 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 291 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhh
Confidence 01111222345668899999999999999998663322233446788999999999999999999999987542
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 910 YLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 910 ~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
...++..+|.+|..+|++++|...|++++.+.+.
T Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 292 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 2358889999999999999999999999988664
No 56
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=5.9e-16 Score=184.88 Aligned_cols=286 Identities=10% Similarity=-0.031 Sum_probs=180.7
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 039706 597 AETIAAQEACEKWRLSNRAATRMA----LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA----LGEIEDASKYFRMC 668 (1166)
Q Consensus 597 a~~~aAIe~~e~~ay~nrA~ayl~----lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~----lGd~eeAl~~fekA 668 (1166)
..+..+.+.-.+.+++.+|.+|.. .+++++|+..|+++++. .++.+++.||.+|.. .+++++|+.+|+++
T Consensus 28 ~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 105 (490)
T 2xm6_A 28 EQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA 105 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 344455566677888889999999 99999999999999986 689999999999999 99999999999999
Q ss_pred HHcCCCchhHHHHHHHHHHH----hhhHHhHHHHHHHH------------HHHHHh--hcCCCHHHHHHHHHHHHHhCCC
Q 039706 669 LQSGSDVCVDQKIAVEASDG----LQKAQKVSECMQRS------------AQLLQN--KTSNDAEIALGVIDEALFISSY 730 (1166)
Q Consensus 669 Lel~P~n~~a~~~l~Ea~~~----L~k~~~~~e~~~~a------------~~~l~~--~~~gd~eeALe~lekALel~P~ 730 (1166)
++.. +......+..++.. ..+..++..++..+ +.++.. ...+++++|+.+|+++++. .
T Consensus 106 ~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~ 181 (490)
T 2xm6_A 106 ALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--G 181 (490)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 9864 44455555555443 23333333333322 222221 1268999999999999886 5
Q ss_pred hHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHH---
Q 039706 731 SEKLLEMKAEALFM----LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT--- 803 (1166)
Q Consensus 731 ~~~al~~lA~~y~~----lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~--- 803 (1166)
++.++..+|.+|.. .+++++|+.+|+++++... +.+ +..+|.+|..
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a-------------------------~~~lg~~y~~g~g 234 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD--ELG-------------------------QLHLADMYYFGIG 234 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHH-------------------------HHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC--HHH-------------------------HHHHHHHHHcCCC
Confidence 78999999999999 9999999999999987532 111 2345555555
Q ss_pred -cCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH----cCChHHHHHHHHHHHhccccCCchhHH
Q 039706 804 -LGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ----AGRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 804 -lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~----~G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
.+++++|+.+|+++.... ....+..+|.++.. .+++++|+.+|+++++. .++.
T Consensus 235 ~~~~~~~A~~~~~~a~~~~----------------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~------~~~~ 292 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQG----------------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ------GNSD 292 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTT----------------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT------TCHH
T ss_pred CCCCHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc------CCHH
Confidence 566666666666653211 11223334444444 44455555555544432 1233
Q ss_pred HHHHHHHHHHHh-----hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh---CHHHHHHHHHHHHH
Q 039706 879 CFCNRAAAYKAL-----RHITDAIADCNLAIALDGNYLKAISRRATLYEMIR---DYDHAASDFHRLIA 939 (1166)
Q Consensus 879 a~~nlA~ay~~l-----Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG---dyeeAi~~yekALe 939 (1166)
+++++|.+|... +++++|+.+|+++++. .++.+++.+|.+|...| ++++|+.+|+++++
T Consensus 293 a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 293 GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 444444444444 4444455554444443 23344444444444422 44444444444444
No 57
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=3.6e-18 Score=214.62 Aligned_cols=179 Identities=18% Similarity=0.190 Sum_probs=164.2
Q ss_pred hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCC
Q 039706 727 ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGR 806 (1166)
Q Consensus 727 l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd 806 (1166)
..|++++++.++|.+|..+|++++|+.+|+++++++|++..+ +..+|.+|..+|+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a-------------------------~~nLg~~l~~~g~ 58 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA-------------------------HSNLASVLQQQGK 58 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH-------------------------HHHHHHHHHHTTC
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------------------------HHHHHHHHHHcCC
Confidence 468999999999999999999999999999999999976432 5679999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHH
Q 039706 807 LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAA 886 (1166)
Q Consensus 807 ~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~a 886 (1166)
+++|+.+|++++.. .+..+.++.++|.++...|++++|+++|++||+++ |.++.+|+++|.+
T Consensus 59 ~~eA~~~~~~Al~l--------------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~----P~~~~a~~~Lg~~ 120 (723)
T 4gyw_A 59 LQEALMHYKEAIRI--------------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN----PAFADAHSNLASI 120 (723)
T ss_dssp HHHHHHHHHHHHHH--------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHH
Confidence 99999999998543 34457788899999999999999999999999998 8999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 887 YKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 887 y~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|..+|++++|+..|++||+++|+++.++.++|.+|..++++++|++.|++++++.|+..+..
T Consensus 121 ~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~~~ 182 (723)
T 4gyw_A 121 HKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKN 182 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999987653
No 58
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=2.5e-17 Score=179.34 Aligned_cols=217 Identities=11% Similarity=0.001 Sum_probs=170.7
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
...+..++++|..++..|+|++|+..|++++..+|.+ ..+++.+|.+|+.+|++++|+..|++++++.|++
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~------ 85 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID------ 85 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC------
Confidence 3445667889999999999999999999999999988 8899999999999999999999999998888762
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH--------ccCHHHHHH
Q 039706 682 AVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFM--------LRKYEEVIQ 753 (1166)
Q Consensus 682 l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~--------lGdyeeAi~ 753 (1166)
|..+.+++.+|.+++. +|++++|+.
T Consensus 86 -----------------------------------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~ 118 (261)
T 3qky_A 86 -----------------------------------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIE 118 (261)
T ss_dssp -----------------------------------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHH
T ss_pred -----------------------------------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence 2334667888899998 999999999
Q ss_pred HHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhc
Q 039706 754 LCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLA 833 (1166)
Q Consensus 754 ~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~ 833 (1166)
.|++++...|++..+ . .|+..+...
T Consensus 119 ~~~~~l~~~p~~~~~-------------------------~--------------~a~~~~~~~---------------- 143 (261)
T 3qky_A 119 AFQLFIDRYPNHELV-------------------------D--------------DATQKIREL---------------- 143 (261)
T ss_dssp HHHHHHHHCTTCTTH-------------------------H--------------HHHHHHHHH----------------
T ss_pred HHHHHHHHCcCchhH-------------------------H--------------HHHHHHHHH----------------
Confidence 999999999876432 0 000001110
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh----------hchhHHHHHHHHH
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL----------RHITDAIADCNLA 903 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l----------Gq~eeAi~~lekA 903 (1166)
.......++.+|.+|+..|+|++|+..|++++...|.. +....+++.+|.+|..+ |++++|+..|+++
T Consensus 144 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 144 -RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT-PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 00112235667999999999999999999999987332 34678999999999988 9999999999999
Q ss_pred HHhCCChH---HHHHHHHHHHHHhhCHHHHH
Q 039706 904 IALDGNYL---KAISRRATLYEMIRDYDHAA 931 (1166)
Q Consensus 904 LeldP~~~---~A~~~LA~ay~~lGdyeeAi 931 (1166)
++.+|+++ .++..++.++..+++++++.
T Consensus 222 ~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 222 LQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999884 56666777777777665543
No 59
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2.3e-16 Score=190.33 Aligned_cols=331 Identities=11% Similarity=-0.007 Sum_probs=219.6
Q ss_pred hHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 039706 586 QEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYF 665 (1166)
Q Consensus 586 ~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~f 665 (1166)
+++..+|.+..+... ++. +...|++++|...|+++++..|.+..+|..++.++...|++++|...|
T Consensus 4 ~al~~~P~~~~~w~~-------------l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~ 69 (530)
T 2ooe_A 4 KKLEENPYDLDAWSI-------------LIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLF 69 (530)
T ss_dssp HHHHHCTTCHHHHHH-------------HHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHhhhCCCCHHHHHH-------------HHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 455566665544444 565 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchhHHHHHHHHH-HHhhhHHhH---------------------HHHHHHHHHHHHh-------hcCCCHHH
Q 039706 666 RMCLQSGSDVCVDQKIAVEAS-DGLQKAQKV---------------------SECMQRSAQLLQN-------KTSNDAEI 716 (1166)
Q Consensus 666 ekALel~P~n~~a~~~l~Ea~-~~L~k~~~~---------------------~e~~~~a~~~l~~-------~~~gd~ee 716 (1166)
++++...|+ ...+..+.... ........+ ...+..+..+... ...++++.
T Consensus 70 ~ral~~~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 148 (530)
T 2ooe_A 70 QRCLMKVLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITA 148 (530)
T ss_dssp HHHTTTCCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHH
T ss_pred HHHHhcCCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHH
Confidence 999999995 33333332211 111111110 1122222222211 01578999
Q ss_pred HHHHHHHHHHhCCChH--HHHHHHHHHH-------------HHccCHHHHHHHHHH------HHHh-----ccCCC----
Q 039706 717 ALGVIDEALFISSYSE--KLLEMKAEAL-------------FMLRKYEEVIQLCEQ------TFHF-----AEKNS---- 766 (1166)
Q Consensus 717 ALe~lekALel~P~~~--~al~~lA~~y-------------~~lGdyeeAi~~lek------ALel-----~p~n~---- 766 (1166)
|+..|++++. .|... .+|...+... ...++|.+|...+.. .++. .|...
T Consensus 149 a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 149 VRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 9999999999 56532 3333222211 124567777766655 2221 11100
Q ss_pred ---CCccccCcccccCcc---ch----hh--hhh--------hhhHHHHHHHHHHHH-------cCCHH-------HHHH
Q 039706 767 ---PPLDANGQSMELDSS---ES----TK--HVS--------FRLWRCCLIFKSYFT-------LGRLE-------EAIA 812 (1166)
Q Consensus 767 ---~a~~~~g~~l~ld~~---~~----~~--~~~--------~~~wr~~lLA~ay~~-------lGd~e-------eAl~ 812 (1166)
..|..+......++. .. .. ..+ .....|..+|..+.. .|+++ +|+.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 000000000000000 00 00 000 012234557777765 79987 9999
Q ss_pred HHHHHhc-CCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhH-HHHHHHHHHHHHh
Q 039706 813 ALERHES-GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA-ICFCNRAAAYKAL 890 (1166)
Q Consensus 813 ~lekAl~-~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a-~a~~nlA~ay~~l 890 (1166)
.|++++. ..+ .....+..+|..+...|++++|+..|++++++. |.+. .+|.+++.++..+
T Consensus 308 ~~~~Al~~~~p--------------~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 308 IYERAISTLLK--------------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE----DIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp HHHHHTTTTCS--------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS----SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc--------------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc----ccCchHHHHHHHHHHHHh
Confidence 9999854 222 335567778999999999999999999999987 5553 6999999999999
Q ss_pred hchhHHHHHHHHHHHhCCChHHHHHHHHHH-HHHhhCHHHHHHHHHHHHHHhhhhHHhhcc
Q 039706 891 RHITDAIADCNLAIALDGNYLKAISRRATL-YEMIRDYDHAASDFHRLIALLTKQIEKSNQ 950 (1166)
Q Consensus 891 Gq~eeAi~~lekALeldP~~~~A~~~LA~a-y~~lGdyeeAi~~yekALeL~P~~~e~~~~ 950 (1166)
|++++|+..|++|++..|.....+...+.+ +...|++++|+..|+++++..|++.+.+..
T Consensus 370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~ 430 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLA 430 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999888888777766 446999999999999999999998776643
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=6.7e-17 Score=181.37 Aligned_cols=238 Identities=10% Similarity=-0.009 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 039706 625 RDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQ 704 (1166)
Q Consensus 625 ~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~ 704 (1166)
++|+..|+++|.++|.++.+|+.+|.++...++. +...-+ ..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~----------l~~~g~-----------------~~----------- 74 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL----------LAEKGD-----------------MN----------- 74 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HHHTSC-----------------CH-----------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh----------hhhccc-----------------hh-----------
Confidence 7899999999999999999999999998765321 000000 00
Q ss_pred HHHhhcCCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccch
Q 039706 705 LLQNKTSNDAEIALGVIDEALF-ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSES 783 (1166)
Q Consensus 705 ~l~~~~~gd~eeALe~lekALe-l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~ 783 (1166)
...+.+++|+..|++|+. +.|.+..+|..+|.++..+|++++|+..|++++++.|.+..
T Consensus 75 ----~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------------- 134 (308)
T 2ond_A 75 ----NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---------------- 134 (308)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH----------------
T ss_pred ----hcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc----------------
Confidence 001234677777777777 57777788888888888888888888888888877665421
Q ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH-HcCChHHHHHHH
Q 039706 784 TKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF-QAGRHSEAVEHY 862 (1166)
Q Consensus 784 ~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~-~~G~yeEAie~y 862 (1166)
. .|..++.++...|++++|+..|++++...+.. ...+...+...+ ..|++++|+.+|
T Consensus 135 ------~--~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~--------------~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 135 ------L--VYIQYMKFARRAEGIKSGRMIFKKAREDARTR--------------HHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp ------H--HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC--------------THHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred ------H--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--------------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 13456777778888888888888876544321 122222233322 269999999999
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh---CCC-hHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 863 TAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL---DGN-YLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 863 ~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel---dP~-~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
+++|++. |.++.+|.++|.++..+|++++|+..|++++.. .|+ ...+|..++..+...|++++|...+++++
T Consensus 193 ~~al~~~----p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 193 ELGLKKY----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHH----TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHhC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998 888999999999999999999999999999995 554 78899999999999999999999999999
Q ss_pred HHhhhhHH
Q 039706 939 ALLTKQIE 946 (1166)
Q Consensus 939 eL~P~~~e 946 (1166)
++.|++.+
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 99998654
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.74 E-value=5.6e-17 Score=194.12 Aligned_cols=193 Identities=17% Similarity=0.136 Sum_probs=175.7
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 712 NDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKY-EEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 712 gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdy-eeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
..+++|+..+++++...|..+.+++.+|.+|..+|+| ++|+.+|+++++++|.+..
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~----------------------- 138 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE----------------------- 138 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH-----------------------
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH-----------------------
Confidence 4477888899999999999999999999999999999 9999999999999886532
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc---------CChHHHHHH
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA---------GRHSEAVEH 861 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~---------G~yeEAie~ 861 (1166)
.+..+|.+|+..|++++|+.+|++++...+. ...+..+|.++... |++++|+.+
T Consensus 139 --a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~ 201 (474)
T 4abn_A 139 --AWNQLGEVYWKKGDVTSAHTCFSGALTHCKN---------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201 (474)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC---------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHH
Confidence 2567999999999999999999998554432 35677789999999 999999999
Q ss_pred HHHHHhccccCCchhHHHHHHHHHHHHHh--------hchhHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHhhCHHHH
Q 039706 862 YTAALSCTVESHPFAAICFCNRAAAYKAL--------RHITDAIADCNLAIALDG---NYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 862 y~kALel~~e~~p~~a~a~~nlA~ay~~l--------Gq~eeAi~~lekALeldP---~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
|++|++++ |.++.+|+++|.+|..+ |++++|+.+|++|++++| .++.+|+.+|.+|..+|++++|
T Consensus 202 ~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A 277 (474)
T 4abn_A 202 AKLAVQMD----VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEA 277 (474)
T ss_dssp HHHHHHHC----TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhC----CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 99999998 88999999999999999 999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHhh
Q 039706 931 ASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 931 i~~yekALeL~P~~~e~~ 948 (1166)
+..|++++++.|++.+.+
T Consensus 278 ~~~~~~al~l~p~~~~a~ 295 (474)
T 4abn_A 278 LEGFSQAAALDPAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 999999999999987654
No 62
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=5.5e-17 Score=186.88 Aligned_cols=258 Identities=14% Similarity=0.052 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAID------PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeld------P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
+|+.+|..++..|+|++|+..|++|+.+. +..+.+++.+|.+|..+|++++|+.++++++.+.+..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-------- 174 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-------- 174 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC--------
Confidence 56789999999999999999999999873 2346789999999999999999999999988754321
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAE 763 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p 763 (1166)
+++ .+....++..+|.+|..+|++++|+.++++++.+.+
T Consensus 175 ----------------------------~~~-------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 213 (378)
T 3q15_A 175 ----------------------------PLY-------------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213 (378)
T ss_dssp ----------------------------TTC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------------------CCc-------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 100 001245677899999999999999999999998866
Q ss_pred CCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHh
Q 039706 764 KNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRK 843 (1166)
Q Consensus 764 ~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~ 843 (1166)
..... ......+..+|.+|..+|++++|+.++++++.. .... ..+..+..+.
T Consensus 214 ~~~~~-------------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~--------~~~~-~~~~~~~~~~ 265 (378)
T 3q15_A 214 DIQND-------------------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV--------SREK-VPDLLPKVLF 265 (378)
T ss_dssp HTTCH-------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HHHH-CGGGHHHHHH
T ss_pred HcCCH-------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------HHhh-CChhHHHHHH
Confidence 43221 122334577999999999999999999997431 1111 2333477888
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHhcccc-CCchhHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 844 SAGNEAFQAGRHSEAVEHYTAALSCTVE-SHPFAAICFCNRAAAYKALRH---ITDAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 844 ~lG~~~~~~G~yeEAie~y~kALel~~e-~~p~~a~a~~nlA~ay~~lGq---~eeAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
.+|.++...|++++|+.+|++++.+... ..+.....+..++.+|...++ +.+|+..+++. ...|....++..+|.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHH
Confidence 8999999999999999999999998642 224445566778888888888 88888888762 334556678889999
Q ss_pred HHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 920 LYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 920 ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
+|..+|++++|+.+|++++++..+..
T Consensus 345 ~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998865543
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.74 E-value=4.1e-17 Score=204.99 Aligned_cols=173 Identities=14% Similarity=0.184 Sum_probs=138.3
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
+..+.+|+++|.+|..+|++++|+..|++||+++|++..+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---------- 75 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---------- 75 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------
Confidence 3445678889999999999999999999999999999999999999999999999888888887766554
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
++.++.++|.+|..+|++++|++.|+++++++|+
T Consensus 76 ----------------------------------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~ 109 (723)
T 4gyw_A 76 ----------------------------------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109 (723)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ----------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4566778888888888888888888888888775
Q ss_pred CCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhh
Q 039706 765 NSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKS 844 (1166)
Q Consensus 765 n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~ 844 (1166)
+.. ++.+
T Consensus 110 ~~~-------------------------------------------------------------------------a~~~ 116 (723)
T 4gyw_A 110 FAD-------------------------------------------------------------------------AHSN 116 (723)
T ss_dssp CHH-------------------------------------------------------------------------HHHH
T ss_pred CHH-------------------------------------------------------------------------HHHH
Confidence 421 2334
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
+|.+|...|++++|+++|++||+++ |.++.+|+++|.+|..+|++++|++.+++++++.|+.
T Consensus 117 Lg~~~~~~g~~~eAi~~~~~Al~l~----P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 117 LASIHKDSGNIPEAIASYRTALKLK----PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 4667777777777777778888777 7778888888888888888888888888888776654
No 64
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=3e-16 Score=189.30 Aligned_cols=188 Identities=11% Similarity=0.007 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hccCCCCCccccCcccccC
Q 039706 715 EIALGVIDEALFISSYSEKLLEMKAEALFM-------LRKYE-------EVIQLCEQTFH-FAEKNSPPLDANGQSMELD 779 (1166)
Q Consensus 715 eeALe~lekALel~P~~~~al~~lA~~y~~-------lGdye-------eAi~~lekALe-l~p~n~~a~~~~g~~l~ld 779 (1166)
..|+..|++++...|.++.+|+.+|.++.. +|+++ +|+..|++++. +.|++..
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~------------ 322 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML------------ 322 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH------------
Confidence 478889999999999999999999999987 79987 99999999997 6775421
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHH
Q 039706 780 SSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAV 859 (1166)
Q Consensus 780 ~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAi 859 (1166)
.+..++.++...|++++|+..|++++...+.. ....|...|..+.+.|++++|+
T Consensus 323 -------------l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 323 -------------LYFAYADYEESRMKYEKVHSIYNRLLAIEDID-------------PTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp -------------HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHhcCCHHHHHHHHHHHhCccccC-------------chHHHHHHHHHHHHhcCHHHHH
Confidence 24568889999999999999999986654431 0235677788889999999999
Q ss_pred HHHHHHHhccccCCchhHHHHHHHHHH-HHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 039706 860 EHYTAALSCTVESHPFAAICFCNRAAA-YKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLI 938 (1166)
Q Consensus 860 e~y~kALel~~e~~p~~a~a~~nlA~a-y~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekAL 938 (1166)
..|++|++.. |....++...+.+ +..+|++++|+..|+++++.+|+++.+|..++.++..+|++++|...|++++
T Consensus 377 ~~~~~Al~~~----~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 377 MIFKKAREDA----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHHHTCT----TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcc----CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 9999999876 5555666655554 4468999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh
Q 039706 939 ALLTKQ 944 (1166)
Q Consensus 939 eL~P~~ 944 (1166)
...|.+
T Consensus 453 ~~~~~~ 458 (530)
T 2ooe_A 453 TSGSLP 458 (530)
T ss_dssp HSCCSC
T ss_pred hccCCC
Confidence 875543
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.73 E-value=6.8e-17 Score=171.75 Aligned_cols=189 Identities=13% Similarity=0.055 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISS-YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P-~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
.|++++|+..|++++.+.| .+..+++.+|.++..+|++++|+..|++++.+.|.+.
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------- 76 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA----------------------- 76 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH-----------------------
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH-----------------------
Confidence 5555555555555555555 5555555555555555555555555555555544321
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHH-----HHHhhhhHHHHHcCChHHHHHHHHH
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVREL-----LCRKSAGNEAFQAGRHSEAVEHYTA 864 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a-----~~l~~lG~~~~~~G~yeEAie~y~k 864 (1166)
..+..+|.+|..+|++++|+..|++++. +.+..... ..+..+|.++...|++++|+.+|++
T Consensus 77 --~~~~~l~~~~~~~~~~~~A~~~~~~al~------------~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 142 (228)
T 4i17_A 77 --NAYIGKSAAYRDMKNNQEYIATLTEGIK------------AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH 142 (228)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcccHHHHHHHHHHHHH------------HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence 1133455555555555555555555421 11111111 3355555555555555555555555
Q ss_pred HHhccccCCch--hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 865 ALSCTVESHPF--AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 865 ALel~~e~~p~--~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
+++++ |. .+.+|+++|.+|..+|+ ..++++..+.+.....+ .+......+.|++|+.+|++++++.|
T Consensus 143 al~~~----p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 143 ATDVT----SKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HTTSS----CHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhcC----CCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 55554 55 55555555555544433 22344444443332222 23333444555999999999999999
Q ss_pred hhHHh
Q 039706 943 KQIEK 947 (1166)
Q Consensus 943 ~~~e~ 947 (1166)
++.+.
T Consensus 212 ~~~~~ 216 (228)
T 4i17_A 212 NRTEI 216 (228)
T ss_dssp TCHHH
T ss_pred CCHHH
Confidence 88664
No 66
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.69 E-value=5.4e-16 Score=172.97 Aligned_cols=188 Identities=9% Similarity=-0.021 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHc-CCHHHH
Q 039706 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTL-GRLEEA 810 (1166)
Q Consensus 732 ~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~l-Gd~eeA 810 (1166)
..++..+|.+|..+|++++|+.+|++++.+.+..... ......+..+|.+|... |++++|
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~-------------------~~~a~~~~~lg~~~~~~lg~~~~A 137 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF-------------------RRGANFKFELGEILENDLHDYAKA 137 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------HHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH-------------------HHHHHHHHHHHHHHHHhhcCHHHH
Confidence 4577889999999999999999999999998754221 11123356799999996 999999
Q ss_pred HHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc---hhHHHHHHHHHHH
Q 039706 811 IAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP---FAAICFCNRAAAY 887 (1166)
Q Consensus 811 l~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p---~~a~a~~nlA~ay 887 (1166)
+.+|++++...+. ..........+..+|.++...|+|++|+.+|++++.+.+.... ....+|.++|.+|
T Consensus 138 ~~~~~~Al~~~~~--------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 209 (292)
T 1qqe_A 138 IDCYELAGEWYAQ--------DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (292)
T ss_dssp HHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence 9999997542111 1111223566888999999999999999999999998754322 2234789999999
Q ss_pred HHhhchhHHHHHHHHHHHhCCChHHH-----HHHHHHHHH--HhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 888 KALRHITDAIADCNLAIALDGNYLKA-----ISRRATLYE--MIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 888 ~~lGq~eeAi~~lekALeldP~~~~A-----~~~LA~ay~--~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
..+|++++|+.+|+++++++|.+..+ +..++.++. ..+++++|+..|++++.++|....
T Consensus 210 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 99999999999999999999987654 445566664 457899999999999888776643
No 67
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=5e-15 Score=161.73 Aligned_cols=217 Identities=14% Similarity=0.056 Sum_probs=170.8
Q ss_pred CcchhHHHHHHHHHhchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH
Q 039706 591 EPNLASAETIAAQEACEKWRLSNRAATRMA----LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLA----LGEIEDAS 662 (1166)
Q Consensus 591 ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~----lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~----lGd~eeAl 662 (1166)
+++.|...+..|+++.+..+++++|.+|.. .+++++|+..|+++++++ ++.+++.+|.+|.. .+++++|+
T Consensus 21 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~ 98 (273)
T 1ouv_A 21 DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKAL 98 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHH
Confidence 455666777788887788899999999999 999999999999999986 89999999999999 89999998
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 663 KYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEAL 742 (1166)
Q Consensus 663 ~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y 742 (1166)
.+|+++++++ ++.++..+|.+|
T Consensus 99 ~~~~~a~~~~----------------------------------------------------------~~~a~~~lg~~~ 120 (273)
T 1ouv_A 99 QYYSKACDLK----------------------------------------------------------YAEGCASLGGIY 120 (273)
T ss_dssp HHHHHHHHTT----------------------------------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHcC----------------------------------------------------------CccHHHHHHHHH
Confidence 8888876542 234556667777
Q ss_pred HH----ccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHH----cCCHHHHHHHH
Q 039706 743 FM----LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFT----LGRLEEAIAAL 814 (1166)
Q Consensus 743 ~~----lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~----lGd~eeAl~~l 814 (1166)
.. .+++++|+.+|+++++..+. ..+..+|.+|.. .+++++|+.+|
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~~~~---------------------------~a~~~lg~~~~~~~~~~~~~~~A~~~~ 173 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDLNDG---------------------------DGCTILGSLYDAGRGTPKDLKKALASY 173 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTTCH---------------------------HHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHhcCcH---------------------------HHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77 77777777777777765310 113457777777 77888888888
Q ss_pred HHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH----cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH-
Q 039706 815 ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ----AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA- 889 (1166)
Q Consensus 815 ekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~----~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~- 889 (1166)
++++... ....+..+|.++.. .+++++|+.+|+++++.. + ..+++++|.+|..
T Consensus 174 ~~a~~~~----------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 174 DKACDLK----------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----N--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHHTT----------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----C--HHHHHHHHHHHHTT
T ss_pred HHHHHCC----------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----C--HHHHHHHHHHHHcC
Confidence 7763321 23456667888888 999999999999999865 3 6788999999999
Q ss_pred ---hhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 890 ---LRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 890 ---lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
.+++++|+.+|++|+++.|..+..++.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999876655543
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=1.2e-15 Score=159.12 Aligned_cols=179 Identities=14% Similarity=0.061 Sum_probs=155.3
Q ss_pred hCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCC
Q 039706 727 ISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGR 806 (1166)
Q Consensus 727 l~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd 806 (1166)
..|.++.++..+|.++...|++++|+..+++++...|.+.. .+..+|.+|...|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~~~~~~ 57 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL-------------------------AWLVRAEIYQYLKV 57 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------------------------HHHHHHHHHHHTTC
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH-------------------------HHHHHHHHHHHcCC
Confidence 45778889999999999999999999999999998875421 24568999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc-CChHHHHHHHHHHHhccccCCchhHHHHHHHHH
Q 039706 807 LEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA-GRHSEAVEHYTAALSCTVESHPFAAICFCNRAA 885 (1166)
Q Consensus 807 ~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~-G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ 885 (1166)
+++|+.++++++...+ .....+..+|.++... |++++|+.+|++++. . ...|....++.++|.
T Consensus 58 ~~~A~~~~~~a~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 58 NDKAQESFRQALSIKP--------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D-PTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-TTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCC--------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-cCCcchHHHHHHHHH
Confidence 9999999999754332 2345677789999999 999999999999998 2 223777899999999
Q ss_pred HHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh-hhHH
Q 039706 886 AYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT-KQIE 946 (1166)
Q Consensus 886 ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P-~~~e 946 (1166)
++..+|++++|+..|+++++.+|.+..++..+|.+|..+|++++|+..|++++++.| ....
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999988 5544
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.68 E-value=5.9e-15 Score=169.76 Aligned_cols=284 Identities=12% Similarity=-0.013 Sum_probs=199.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHHHHHH----HHHHHHcCChHHHH-----------HHHHHHHHcC
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDP---DFLRVQVRA----ANCHLALGEIEDAS-----------KYFRMCLQSG 672 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP---~~~~A~~~L----A~lyl~lGd~eeAl-----------~~fekALel~ 672 (1166)
..+-...++..+++++|+..++.+...-+ .+...++.. .+....++.+..+. ..++++-. .
T Consensus 15 ~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~ 93 (383)
T 3ulq_A 15 KINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-K 93 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-c
Confidence 34556678889999999999998865432 244333222 22222233333333 33332211 1
Q ss_pred CCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC---C---ChHHHHHHHHHHHHHcc
Q 039706 673 SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS---S---YSEKLLEMKAEALFMLR 746 (1166)
Q Consensus 673 P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~---P---~~~~al~~lA~~y~~lG 746 (1166)
| ........++............|++++|+.+|++++.+. + ....++..+|.+|..+|
T Consensus 94 ~----------------~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~ 157 (383)
T 3ulq_A 94 Q----------------ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK 157 (383)
T ss_dssp T----------------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred C----------------CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 111111222222223333446899999999999999872 3 35689999999999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchh
Q 039706 747 KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKML 826 (1166)
Q Consensus 747 dyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~l 826 (1166)
++++|+.++++++.+.+..... .......+..+|.+|..+|++++|+.+|++++..
T Consensus 158 ~~~~A~~~~~~al~~~~~~~~~------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 213 (383)
T 3ulq_A 158 QTYFSMDYARQAYEIYKEHEAY------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM------ 213 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTCSTT------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred CHHHHHHHHHHHHHHHHhCccc------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------
Confidence 9999999999999998765321 0112344678999999999999999999997431
Q ss_pred hhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc-CC-chhHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 039706 827 ESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE-SH-PFAAICFCNRAAAYKALRHITDAIADCNLAI 904 (1166)
Q Consensus 827 e~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e-~~-p~~a~a~~nlA~ay~~lGq~eeAi~~lekAL 904 (1166)
..........+..+.++|.++...|++++|+.+|++|+.+... .. |..+.++.++|.+|..+|++++|+.++++++
T Consensus 214 --~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 214 --AEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2222334455678889999999999999999999999986532 22 6778999999999999999999999999999
Q ss_pred Hh-----CCChHHHHHHHHHHHHHhhC---HHHHHHHHHHH
Q 039706 905 AL-----DGNYLKAISRRATLYEMIRD---YDHAASDFHRL 937 (1166)
Q Consensus 905 el-----dP~~~~A~~~LA~ay~~lGd---yeeAi~~yekA 937 (1166)
++ +|.....+..+|.+|...|+ +.+|+..++++
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 292 AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 98 45555557789999999999 55555555443
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.68 E-value=1.2e-15 Score=165.94 Aligned_cols=188 Identities=12% Similarity=0.071 Sum_probs=155.8
Q ss_pred HHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHc
Q 039706 725 LFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTL 804 (1166)
Q Consensus 725 Lel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~l 804 (1166)
..+.|.++..++.+|.+++..|+|++|+..|++++...|.++.. ...++.+|.+|+.+
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----------------------~~a~~~lg~~~~~~ 65 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWA----------------------ADAQFYLARAYYQN 65 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTH----------------------HHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch----------------------HHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999998865321 11246799999999
Q ss_pred CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH--------cCChHHHHHHHHHHHhccccCCchh
Q 039706 805 GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ--------AGRHSEAVEHYTAALSCTVESHPFA 876 (1166)
Q Consensus 805 Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~--------~G~yeEAie~y~kALel~~e~~p~~ 876 (1166)
|++++|+..|++++...|. .+.....++.+|.+++. .|++++|+..|++++...|.. +..
T Consensus 66 ~~~~~A~~~~~~~l~~~p~-----------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~ 133 (261)
T 3qky_A 66 KEYLLAASEYERFIQIYQI-----------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH-ELV 133 (261)
T ss_dssp TCHHHHHHHHHHHHHHCTT-----------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC-TTH
T ss_pred CcHHHHHHHHHHHHHHCCC-----------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc-hhH
Confidence 9999999999997654332 12335667788999999 999999999999999988432 222
Q ss_pred HHHH--------------HHHHHHHHHhhchhHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHh----------hCHHH
Q 039706 877 AICF--------------CNRAAAYKALRHITDAIADCNLAIALDGN---YLKAISRRATLYEMI----------RDYDH 929 (1166)
Q Consensus 877 a~a~--------------~nlA~ay~~lGq~eeAi~~lekALeldP~---~~~A~~~LA~ay~~l----------Gdyee 929 (1166)
..++ +++|.+|..+|++++|+..|++++...|+ ...+++.+|.+|..+ |++++
T Consensus 134 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (261)
T 3qky_A 134 DDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRR 213 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHH
Confidence 2232 88999999999999999999999999998 678999999999988 99999
Q ss_pred HHHHHHHHHHHhhhhHH
Q 039706 930 AASDFHRLIALLTKQIE 946 (1166)
Q Consensus 930 Ai~~yekALeL~P~~~e 946 (1166)
|+..|+++++.+|++..
T Consensus 214 A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 214 AVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHCCCChH
Confidence 99999999999998754
No 71
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=5.4e-16 Score=184.46 Aligned_cols=286 Identities=12% Similarity=-0.041 Sum_probs=194.1
Q ss_pred cchhHHHHHHHHHhchHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----ChHHHHH
Q 039706 592 PNLASAETIAAQEACEKWRLSNRAATRMALGRM---RDALSDCMLAVAIDPDFLRVQVRAANCHLALG-----EIEDASK 663 (1166)
Q Consensus 592 p~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y---~eAI~~fekALeldP~~~~A~~~LA~lyl~lG-----d~eeAl~ 663 (1166)
+..|...+..+++...+.+++++|.+|+..|++ ++|+..|+++++. ++.+++.+|.++...+ ++++|+.
T Consensus 19 ~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~ 95 (452)
T 3e4b_A 19 TVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAES 95 (452)
T ss_dssp HHHHHHHHHHHHHHTCCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 344556677777777778889999999999999 9999999999976 7789999999877776 8899999
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhhhHHh---HHHH------------HHHHHHHHHhhcCC----CHHHHHHHHHHH
Q 039706 664 YFRMCLQSGSDVCVDQKIAVEASDGLQKAQK---VSEC------------MQRSAQLLQNKTSN----DAEIALGVIDEA 724 (1166)
Q Consensus 664 ~fekALel~P~n~~a~~~l~Ea~~~L~k~~~---~~e~------------~~~a~~~l~~~~~g----d~eeALe~lekA 724 (1166)
+|++++..++.. ....+..++........ .... ...++.++ ...+ ..+.|..++..+
T Consensus 96 ~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y--~~~~~~~~~~~~a~~~~~~a 171 (452)
T 3e4b_A 96 LLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLY--RTQGTYDQHLDDVERICKAA 171 (452)
T ss_dssp HHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHH--HHHTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH--HcCCCcccCHHHHHHHHHHH
Confidence 999999865443 44444444443332111 1111 11111121 1223 455555666666
Q ss_pred HHhCCChHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHH
Q 039706 725 LFISSYSEKLLEMKAEALFMLR---KYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSY 801 (1166)
Q Consensus 725 Lel~P~~~~al~~lA~~y~~lG---dyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay 801 (1166)
...+|. +++.+|.+|...| ++++|+..|++++...+.... .++.+|.+|
T Consensus 172 ~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~-------------------------~~~~Lg~~y 223 (452)
T 3e4b_A 172 LNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ-------------------------RVDSVARVL 223 (452)
T ss_dssp TTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH-------------------------HHHHHHHHH
T ss_pred HcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH-------------------------HHHHHHHHH
Confidence 555555 8999999999999 999999999999988764321 125588888
Q ss_pred HHc----CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH-H--HHcCChHHHHHHHHHHHhccccCCc
Q 039706 802 FTL----GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE-A--FQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 802 ~~l----Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~-~--~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
... +++++|+.+|+++. +.....+..+|.+ + ...+++++|+.+|++|++ .
T Consensus 224 ~~g~~~~~d~~~A~~~~~~aa-----------------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~------~ 280 (452)
T 3e4b_A 224 GDATLGTPDEKTAQALLEKIA-----------------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA------A 280 (452)
T ss_dssp TCGGGSSCCHHHHHHHHHHHG-----------------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH------T
T ss_pred hCCCCCCCCHHHHHHHHHHHc-----------------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH------C
Confidence 665 79999999999973 2345566777887 4 478999999999999997 4
Q ss_pred hhHHHHHHHHHHHHHhh-----chhHHHHHHHHHHHhCCChHHHHHHHHHHHHH----hhCHHHHHHHHHHHHH
Q 039706 875 FAAICFCNRAAAYKALR-----HITDAIADCNLAIALDGNYLKAISRRATLYEM----IRDYDHAASDFHRLIA 939 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lG-----q~eeAi~~lekALeldP~~~~A~~~LA~ay~~----lGdyeeAi~~yekALe 939 (1166)
.++.+++++|.+|. .| ++++|+.+|++|+ +.++.+++++|.+|.. ..++++|+.+|+++.+
T Consensus 281 g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 281 DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 47889999999998 66 9999999999999 8999999999999987 4499999999999985
No 72
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.66 E-value=2.7e-15 Score=167.33 Aligned_cols=231 Identities=11% Similarity=-0.028 Sum_probs=160.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 615 AATRMALGRMRDALSDCMLAVAIDPD------FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 615 A~ayl~lG~y~eAI~~fekALeldP~------~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
|.+|..+|+|++|+.+|.+|+.+.+. ...+|..+|.+|..+|++++|+.+|++++++.|.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~-------------- 109 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH-------------- 109 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------------
Confidence 55666777777777777777776432 1456777777777777777777777777654321
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML-RKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l-GdyeeAi~~lekALel~p~n~~ 767 (1166)
.|++..+ ..++..+|.+|..+ |++++|+.+|++++++.|....
T Consensus 110 ----------------------~g~~~~~--------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 110 ----------------------RGQFRRG--------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp ----------------------TTCHHHH--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------------------cCCHHHH--------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 1222222 34577899999996 9999999999999999885421
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
. ......+..+|.+|..+|++++|+.+|++++...+.... ........+..+|.
T Consensus 154 ~-------------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~lg~ 207 (292)
T 1qqe_A 154 V-------------------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL-------SQWSLKDYFLKKGL 207 (292)
T ss_dssp H-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT-------TGGGHHHHHHHHHH
T ss_pred h-------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc-------ccHHHHHHHHHHHH
Confidence 1 011123567899999999999999999998765544211 01123446778899
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCc-hhHHHHHHHHHHHH--HhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHP-FAAICFCNRAAAYK--ALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p-~~a~a~~nlA~ay~--~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
++...|++++|+.+|++++.++|.... .....+..++.++. ..+++++|+..|++++.++|.+..++..+-..+
T Consensus 208 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 208 CQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999999999999999998843211 12234555666664 457799999999999999998877777665554
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=2.3e-15 Score=168.81 Aligned_cols=239 Identities=8% Similarity=-0.087 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHH-------HcCCh-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 039706 608 KWRLSNRAATRM-------ALGRM-------RDALSDCMLAVA-IDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG 672 (1166)
Q Consensus 608 ~~ay~nrA~ayl-------~lG~y-------~eAI~~fekALe-ldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~ 672 (1166)
+.+|+++|..+. ..|++ ++|+..|++|++ ++|++..+|..+|.++..+|++++|...|++++++.
T Consensus 50 ~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 129 (308)
T 2ond_A 50 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 129 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Confidence 345666777765 45886 999999999999 799999999999999999999999999999999999
Q ss_pred CCchh-HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH-ccCHHH
Q 039706 673 SDVCV-DQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFM-LRKYEE 750 (1166)
Q Consensus 673 P~n~~-a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~-lGdyee 750 (1166)
|.+.. .+. ....++ ...|++++|+..|+++++..|....++...+.+... +|++++
T Consensus 130 p~~~~~~~~--------------------~~~~~~--~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 130 DIDPTLVYI--------------------QYMKFA--RRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp SSCTHHHHH--------------------HHHHHH--HHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred ccCccHHHH--------------------HHHHHH--HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 87532 111 111111 135788889999999998888887777766655443 689999
Q ss_pred HHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhh
Q 039706 751 VIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLI 830 (1166)
Q Consensus 751 Ai~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~ 830 (1166)
|+..|++++++.|++.. .+..++..+..+|++++|+.+|++++....
T Consensus 188 A~~~~~~al~~~p~~~~-------------------------~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-------- 234 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPE-------------------------YVLAYIDYLSHLNEDNNTRVLFERVLTSGS-------- 234 (308)
T ss_dssp HHHHHHHHHHHHTTCHH-------------------------HHHHHHHHHHTTCCHHHHHHHHHHHHHSSS--------
T ss_pred HHHHHHHHHHhCCCcHH-------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhccC--------
Confidence 99999999988875422 134567777788888888888888744210
Q ss_pred hhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 831 PLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 831 ~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
+.+ ......+...+..+...|++++|+.++++++++.|+ +..... ++.+ ..-.+.+.++|.+
T Consensus 235 -l~p-~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~----~~~~~~-~~~~-----------~~r~~~l~~~P~~ 296 (308)
T 2ond_A 235 -LPP-EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE----EYEGKE-TALL-----------VDRYKFMDLYPCS 296 (308)
T ss_dssp -SCG-GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT----TTSSCH-HHHH-----------HTTTCBTTBCSSC
T ss_pred -CCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc----ccccch-HHHH-----------HHHHHhcccCCCC
Confidence 000 012334555577777788888888888888887732 221111 1111 1111556677888
Q ss_pred HHHHHHHHH
Q 039706 911 LKAISRRAT 919 (1166)
Q Consensus 911 ~~A~~~LA~ 919 (1166)
+.++..+|.
T Consensus 297 ~~~ln~lgY 305 (308)
T 2ond_A 297 ASELKALGY 305 (308)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhcCC
Confidence 877776653
No 74
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.65 E-value=1.5e-14 Score=163.77 Aligned_cols=248 Identities=10% Similarity=0.046 Sum_probs=197.7
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhh
Q 039706 615 AATRMALGRM-RDALSDCMLAVAIDPDFLRVQVRAANCHLALG--EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQK 691 (1166)
Q Consensus 615 A~ayl~lG~y-~eAI~~fekALeldP~~~~A~~~LA~lyl~lG--d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k 691 (1166)
..+.+..|.+ ++|+..+.++|.++|++..+|..++.++..++ ++++|+..+.++|..+|.+...+.....+...+..
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 3445556666 68999999999999999999999999999999 99999999999999999987665443332211100
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhccCCCCCc
Q 039706 692 AQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYE--EVIQLCEQTFHFAEKNSPPL 769 (1166)
Q Consensus 692 ~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdye--eAi~~lekALel~p~n~~a~ 769 (1166)
. ....+++++++..++++++.+|.+..+|..++.++..+++++ ++++++.++++.+|.|..+
T Consensus 119 -------------~--l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sA- 182 (306)
T 3dra_A 119 -------------L--NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSA- 182 (306)
T ss_dssp -------------H--TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHH-
T ss_pred -------------h--ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHH-
Confidence 0 001278999999999999999999999999999999999999 9999999999999877433
Q ss_pred cccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 770 DANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 770 ~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
|. ..+.++..++.. .
T Consensus 183 ----------------------W~--~R~~ll~~l~~~--------------------------------------~--- 197 (306)
T 3dra_A 183 ----------------------WS--HRFFLLFSKKHL--------------------------------------A--- 197 (306)
T ss_dssp ----------------------HH--HHHHHHHSSGGG--------------------------------------C---
T ss_pred ----------------------HH--HHHHHHHhcccc--------------------------------------c---
Confidence 22 222222222110 0
Q ss_pred HHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH-HHHHHHHHHHhC---CChHHHHHHHHHHHHHhh
Q 039706 850 FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD-AIADCNLAIALD---GNYLKAISRRATLYEMIR 925 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee-Ai~~lekALeld---P~~~~A~~~LA~ay~~lG 925 (1166)
....+++++++++++|.++ |.+..+|+.++.++..+|+..+ +...+.+++.++ |.++.++..+|.+|.++|
T Consensus 198 -~~~~~~eEl~~~~~aI~~~----p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 198 -TDNTIDEELNYVKDKIVKC----PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp -CHHHHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred -hhhhHHHHHHHHHHHHHhC----CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 0012788999999999998 9999999999999999998555 556888888776 888999999999999999
Q ss_pred CHHHHHHHHHHHHH-HhhhhHHhh
Q 039706 926 DYDHAASDFHRLIA-LLTKQIEKS 948 (1166)
Q Consensus 926 dyeeAi~~yekALe-L~P~~~e~~ 948 (1166)
++++|++.|+.+.+ ++|-...-|
T Consensus 273 ~~~~A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CHHHHHHHHHHHHhccChHHHHHH
Confidence 99999999999997 788877665
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.64 E-value=3e-15 Score=150.55 Aligned_cols=173 Identities=17% Similarity=0.122 Sum_probs=149.4
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHH
Q 039706 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEA 810 (1166)
Q Consensus 731 ~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeA 810 (1166)
...++..+|.++...|++++|+..+++++...|.+. ..+..+|.+|...|++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~A 61 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV-------------------------DVALHLGIAYVKTGAVDRG 61 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH-------------------------HHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh-------------------------HHHHHHHHHHHHcCCHHHH
Confidence 356778889999999999999999998887766431 1245688899999999999
Q ss_pred HHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh
Q 039706 811 IAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL 890 (1166)
Q Consensus 811 l~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l 890 (1166)
+.++++++...+ .....+..+|.++...|++++|+.+|++++... |....++..+|.++..+
T Consensus 62 ~~~~~~~~~~~~--------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~ 123 (186)
T 3as5_A 62 TELLERSLADAP--------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN----PINFNVRFRLGVALDNL 123 (186)
T ss_dssp HHHHHHHHHHCT--------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCC--------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----cHhHHHHHHHHHHHHHc
Confidence 999998744322 234566778999999999999999999999987 77889999999999999
Q ss_pred hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 891 RHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 891 Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|++++|+..+++++...|.++.++..+|.+|..+|++++|+..|++++++.|++..
T Consensus 124 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999999999999999999999999999999999999999999999887643
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.64 E-value=4.7e-15 Score=159.56 Aligned_cols=206 Identities=16% Similarity=0.007 Sum_probs=166.1
Q ss_pred cCCCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCcc
Q 039706 710 TSNDAEIALGVIDEALFI--------SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSS 781 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel--------~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~ 781 (1166)
..+++++|+.+|++++++ .|....++..+|.+|..+|++++|+.++++++.+....... +.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~~- 81 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK----------DH- 81 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT----------TC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC----------cc-
Confidence 467888888888888874 25667899999999999999999999999999885321000 00
Q ss_pred chhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh--ccchHHHHHHhhhhHHHHHcCChHHHH
Q 039706 782 ESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL--AGTVRELLCRKSAGNEAFQAGRHSEAV 859 (1166)
Q Consensus 782 ~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L--~~~~~~a~~l~~lG~~~~~~G~yeEAi 859 (1166)
......+..+|.+|...|++++|+.+|++++.. .... ...+..+..+..+|.++...|++++|+
T Consensus 82 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 82 ------PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI--------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp ------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 112234577999999999999999999997431 1111 113566788899999999999999999
Q ss_pred HHHHHHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-----------------------------
Q 039706 860 EHYTAALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL----------------------------- 906 (1166)
Q Consensus 860 e~y~kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel----------------------------- 906 (1166)
.+|++++.+.. ...+....++.++|.+|..+|++++|+..+++++.+
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 99999998721 124788899999999999999999999999999986
Q ss_pred --------------------CCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 907 --------------------DGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 907 --------------------dP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.|..+.++..+|.+|..+|++++|+..|++++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2556778999999999999999999999999864
No 77
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.63 E-value=1.6e-15 Score=189.85 Aligned_cols=174 Identities=11% Similarity=-0.021 Sum_probs=118.6
Q ss_pred HHcCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 619 MALGRMRDALSDCMLAV--------AIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 619 l~lG~y~eAI~~fekAL--------eldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
+..|++++|+..|++++ +++|++..+++.+|.+|..+|++++|+..|+++++++|++...+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-------- 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYR-------- 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHH--------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHH--------
Confidence 78899999999999999 99999999999999999999999999999999888777643221111
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLD 770 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~ 770 (1166)
+.+ +...|++++|+..|+++++++|.++.++..+|.+|..+|++++ +..|+++++++|.+
T Consensus 474 ------------g~~--~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~----- 533 (681)
T 2pzi_A 474 ------------AVA--ELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV----- 533 (681)
T ss_dssp ------------HHH--HHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC-----
T ss_pred ------------HHH--HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch-----
Confidence 001 1123555555555555555555555555555555555555555 55555555554432
Q ss_pred ccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHH
Q 039706 771 ANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAF 850 (1166)
Q Consensus 771 ~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~ 850 (1166)
...+.++|.++.
T Consensus 534 --------------------------------------------------------------------~~a~~~lg~~~~ 545 (681)
T 2pzi_A 534 --------------------------------------------------------------------ISAAFGLARARS 545 (681)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Confidence 334555677888
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhc
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRH 892 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq 892 (1166)
..|++++|+.+|++|++++ |.+..+|+++|.+|...++
T Consensus 546 ~~g~~~~A~~~~~~al~l~----P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVPPTS----RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTTCHHHHHHHHHTSCTTS----TTHHHHHHHHHHHTC----
T ss_pred HcCCHHHHHHHHHhhcccC----cccHHHHHHHHHHHHccCC
Confidence 8888888888888888877 8888888888888877555
No 78
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.62 E-value=2.8e-14 Score=152.56 Aligned_cols=125 Identities=7% Similarity=-0.122 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
+.+++++|..++..|+|++|+..|++++...|.. ..+++.+|.+|+.+|++++|+..|++++++.|++......
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a--- 80 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV--- 80 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH---
Confidence 4568899999999999999999999999999976 4799999999999999999999999999999986431110
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
+...+..+.. . .+.....+..++.++..+|++++|+..|+++++..|+
T Consensus 81 --------------~~~~g~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 128 (225)
T 2yhc_A 81 --------------MYMRGLTNMA--L----------------DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN 128 (225)
T ss_dssp --------------HHHHHHHHHH--H----------------HC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred --------------HHHHHHHHHh--h----------------hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence 0011111000 0 0111123445666777788888888888888888886
Q ss_pred CCC
Q 039706 765 NSP 767 (1166)
Q Consensus 765 n~~ 767 (1166)
...
T Consensus 129 ~~~ 131 (225)
T 2yhc_A 129 SQY 131 (225)
T ss_dssp CTT
T ss_pred Chh
Confidence 643
No 79
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.62 E-value=1e-14 Score=154.46 Aligned_cols=186 Identities=12% Similarity=0.046 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..++.+|..++..|+|++|+..|+++++++|++..+|+.++. . .....
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----~----------------~~~~~----------- 52 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----D----------------KNSEI----------- 52 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----C----------------TTSHH-----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----c----------------chhhh-----------
Confidence 456778999999999999999999999999999888876431 0 00000
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
........+.+ +...|++++|+..|+++++++|.++.++..+|.+|..+|++++|+..|+++++++|++..+
T Consensus 53 ------~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a 124 (208)
T 3urz_A 53 ------SSKLATELALA--YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA 124 (208)
T ss_dssp ------HHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred ------hHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 00000111111 2246777778888888888888888888889999999999999999999999888865332
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE 848 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~ 848 (1166)
+..+|.+|+..|+.
T Consensus 125 -------------------------~~~lg~~~~~~~~~----------------------------------------- 138 (208)
T 3urz_A 125 -------------------------NIFLGNYYYLTAEQ----------------------------------------- 138 (208)
T ss_dssp -------------------------HHHHHHHHHHHHHH-----------------------------------------
T ss_pred -------------------------HHHHHHHHHHHhHH-----------------------------------------
Confidence 34455555443321
Q ss_pred HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 849 AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 849 ~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
....|+..|.+++... ....+++++|.++..+|++++|+.+|++|++++|+.
T Consensus 139 -----~~~~~~~~~~~~~~~~-----~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 139 -----EKKKLETDYKKLSSPT-----KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -----HHHHHHHHHC---CCC-----HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred -----HHHHHHHHHHHHhCCC-----chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 1223444454444321 223356667777777777777777777777777763
No 80
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.62 E-value=6.4e-17 Score=184.03 Aligned_cols=136 Identities=28% Similarity=0.372 Sum_probs=28.5
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||+++++.++||+|||++|++||||+++. ..|+++|++|++||++|+||.+|
T Consensus 28 ~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~---------------------~~a~~~f~~i~~Ay~vL~d~~~R 86 (329)
T 3lz8_A 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE---------------------NDAEAKFKDLAEAWEVLKDEQRR 86 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------hHHHHHHHHHHHHHHHhhhhhhh
Confidence 499999999999999999999999999999999752 36788999999999999999999
Q ss_pred cccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccC-----CCCCCCCceEEeeeeeeeccccccc
Q 039706 1064 SRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYD-----NSAARGDIYSISFNLRIASNKRCYR 1138 (1166)
Q Consensus 1064 ~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----~~~~rG~~~~~~~~lsf~ea~~G~~ 1138 (1166)
+.||.+..........++.+ .+. . .|+..+....|..+|++.+ ...++|.++.+.+.|+|+|+++|++
T Consensus 87 ~~YD~~~~~~~~~~~~~~~~---~~~--~--~f~~~~f~diF~~~Fg~~g~~~~~~~~~~g~Dl~~~l~vsleea~~G~~ 159 (329)
T 3lz8_A 87 AEYDQLWQHRNDPGFGRQRQ---THE--Q--SYSQQDFDDIFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQT 159 (329)
T ss_dssp ---------------------------------------------------------CCCCCCEEEEECCCTTGGGSCEE
T ss_pred cccchhhccccCCCcccccc---ccc--C--CcCCCchhhhhHhhhcCcCCCCCCCCcCCCCCEEEEEecchhhhhhccc
Confidence 99999743211000000000 000 0 0110001112334443321 1235689999999999999999999
Q ss_pred ceeeceeee
Q 039706 1139 PFVTIREFM 1147 (1166)
Q Consensus 1139 K~i~~~~~~ 1147 (1166)
+.|.+...+
T Consensus 160 k~i~i~~~v 168 (329)
T 3lz8_A 160 RTISYNLPV 168 (329)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEe
Confidence 999998554
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.61 E-value=1.6e-13 Score=157.97 Aligned_cols=204 Identities=13% Similarity=0.061 Sum_probs=162.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCc
Q 039706 707 QNKTSNDAEIALGVIDEALFISS------YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDS 780 (1166)
Q Consensus 707 ~~~~~gd~eeALe~lekALel~P------~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~ 780 (1166)
.....|++++|+.+|++|+.+.+ ....++..+|.+|..+|++++|+.++++++.+.+.....
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~------------ 177 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY------------ 177 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC------------
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc------------
Confidence 34568999999999999998742 346789999999999999999999999999998764321
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHH
Q 039706 781 SESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860 (1166)
Q Consensus 781 ~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie 860 (1166)
. ......+..+|.+|..+|++++|+.+|++++. ...........+..+.++|.++...|++++|+.
T Consensus 178 ~------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 178 S------IRTIQSLFVIAGNYDDFKHYDKALPHLEAALE--------LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp H------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred h------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------HHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0 01233457799999999999999999999743 222222334556788899999999999999999
Q ss_pred HHHHHHhccc-cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHhhC---HHHHH
Q 039706 861 HYTAALSCTV-ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL-----DGNYLKAISRRATLYEMIRD---YDHAA 931 (1166)
Q Consensus 861 ~y~kALel~~-e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel-----dP~~~~A~~~LA~ay~~lGd---yeeAi 931 (1166)
+|++++.+.. ...|..+.+++++|.+|..+|++++|+.++++++++ ++.....+..++.+|...++ +.+|+
T Consensus 244 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9999998432 123667899999999999999999999999999998 45566677888888888888 56666
Q ss_pred HHHHH
Q 039706 932 SDFHR 936 (1166)
Q Consensus 932 ~~yek 936 (1166)
..+++
T Consensus 324 ~~~~~ 328 (378)
T 3q15_A 324 SYFEK 328 (378)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.61 E-value=1.5e-14 Score=154.81 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHhCCChH---HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 880 FCNRAAAYKALRHITDAIADCNLAIALDGNYL---KAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 880 ~~nlA~ay~~lGq~eeAi~~lekALeldP~~~---~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
...+|.+|...|++.+|+..|+++++..|+.+ .+++.+|.+|..+|++++|+..+++++...|+..+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 36789999999999999999999999999875 789999999999999999999999999887777653
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.60 E-value=2.2e-13 Score=155.45 Aligned_cols=284 Identities=11% Similarity=-0.044 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDF------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
++.++|.+|...|++++|+..+++++.+.|.. ..++..+|.++..+|++++|+.+|++++.+.+.....
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~----- 129 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE----- 129 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT-----
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-----
Confidence 57889999999999999999999999986643 2457889999999999999999999999864221000
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY-----SEKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~-----~~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
........+...... +...|++++|+.++++++.+.+. ...++..+|.++...|++++|+.+++++
T Consensus 130 -------~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 130 -------QLPMHEFLVRIRAQL--LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp -------TSTHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -------cCcHHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000001111112222 23479999999999999998764 3567889999999999999999999999
Q ss_pred HHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHH
Q 039706 759 FHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRE 838 (1166)
Q Consensus 759 Lel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~ 838 (1166)
+.+.+..... ..........++.++...|++++|+.++++++...+.. ....
T Consensus 201 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~----------~~~~ 252 (373)
T 1hz4_A 201 ENLLGNGKYH------------------SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN----------NHFL 252 (373)
T ss_dssp HHHHTTSCCC------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT----------CGGG
T ss_pred HHHHhccCcc------------------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc----------chhh
Confidence 9885532110 00001111234566889999999999999976533221 0011
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC--chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH--PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~--p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
...+..+|.++...|++++|+..+++++...+... .....++..+|.++..+|++++|+..+.+++.+.+...
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g----- 327 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG----- 327 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-----
Confidence 22356679999999999999999999998753211 12345888999999999999999999999998764311
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 917 RATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 917 LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
....+...| +.....+++++...|
T Consensus 328 ~~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 328 FISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp CCHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHHHcc--HHHHHHHHHHHhCCC
Confidence 112223333 556666777766554
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.60 E-value=8.1e-15 Score=155.20 Aligned_cols=185 Identities=10% Similarity=0.023 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHH
Q 039706 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAI 811 (1166)
Q Consensus 732 ~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl 811 (1166)
+..++.+|..++..|++++|+..|++++.++|++..++...+... .. .........+|.+|...|++++|+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~---~~------~~~~~~~~~lg~~~~~~g~~~~A~ 74 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDK---NS------EISSKLATELALAYKKNRNYDKAY 74 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCT---TS------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcc---hh------hhhHHHHHHHHHHHHHCCCHHHHH
Confidence 455666677777777777777777777777665543321111000 00 000111245899999999999999
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhh
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALR 891 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lG 891 (1166)
..|++++... +.....+..+|.++...|++++|+.+|+++++++ |.++.+|+++|.+|..++
T Consensus 75 ~~~~~al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 75 LFYKELLQKA--------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE----ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHh
Confidence 9999985433 3456778889999999999999999999999998 899999999999998776
Q ss_pred c--hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 892 H--ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 892 q--~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
+ ...|+..+.+++...| ...+++.+|.++..+|+|++|+.+|++++++.|+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 5 5567788888765433 23478889999999999999999999999999874
No 85
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.59 E-value=1.3e-14 Score=162.86 Aligned_cols=192 Identities=15% Similarity=0.003 Sum_probs=153.3
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
.++++.|+.+|.++ +.+|..+|+|++|+..|.+++.+.+..... ...
T Consensus 29 ~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~~ 75 (307)
T 2ifu_A 29 KPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSL-------------------FHA 75 (307)
T ss_dssp SCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------HHH
T ss_pred CCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH-------------------HHH
Confidence 47888898888876 567889999999999999999987754221 111
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
...+..+|.+|..+|++++|+.+|++++.. ...+......+..+.++|.+|.. |++++|+.+|++|+.+.+
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVM--------YVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--------HHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 233567899999999999999999997431 11122223446778889999998 999999999999999874
Q ss_pred cCC--chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 871 ESH--PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY------LKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 871 e~~--p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~------~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
... .....++.++|.+|..+|+|++|+.+|++++.+.|.. ..+++.+|.++..+|++++|+..|++++ +.|
T Consensus 147 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 147 NEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred hCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 321 2346789999999999999999999999999986543 3578899999999999999999999999 888
Q ss_pred hhH
Q 039706 943 KQI 945 (1166)
Q Consensus 943 ~~~ 945 (1166)
...
T Consensus 226 ~~~ 228 (307)
T 2ifu_A 226 GFS 228 (307)
T ss_dssp TST
T ss_pred CCC
Confidence 654
No 86
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=5.4e-14 Score=154.03 Aligned_cols=237 Identities=16% Similarity=0.043 Sum_probs=149.5
Q ss_pred cchhHHHHHHHHHh----------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Q 039706 592 PNLASAETIAAQEA----------CEKWRLSNRAATRMALGRMRDALSDCMLAVAI--------DPDFLRVQVRAANCHL 653 (1166)
Q Consensus 592 p~~A~a~~~aAIe~----------~e~~ay~nrA~ayl~lG~y~eAI~~fekALel--------dP~~~~A~~~LA~lyl 653 (1166)
++.+...+..+++. ....+++.+|.+|..+|++++|+..|++++.+ .|....++..+|.+|.
T Consensus 43 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (311)
T 3nf1_A 43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 122 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 34455555555552 22366889999999999999999999999988 4666889999999999
Q ss_pred HcCChHHHHHHHHHHHHcC-----CCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh-
Q 039706 654 ALGEIEDASKYFRMCLQSG-----SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFI- 727 (1166)
Q Consensus 654 ~lGd~eeAl~~fekALel~-----P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel- 727 (1166)
.+|++++|+.+|++++++. ++.+ .....+...+.+ +...|++++|+.+|++++.+
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~la~~--~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 123 KRGKYKEAEPLCKRALEIREKVLGKDHP-----------------DVAKQLNNLALL--CQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHH--HHTTTCHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHHhcCCCCh-----------------HHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999998753 1110 011111112222 22466777777777777766
Q ss_pred -------CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHH
Q 039706 728 -------SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKS 800 (1166)
Q Consensus 728 -------~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~a 800 (1166)
.|....++..+|.+|..+|++++|+.++++++.+.+..... ..++.
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~------------------- 236 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG--------SVDDE------------------- 236 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--------CCCcc-------------------
Confidence 55556666777777777777777777777776654421000 00000
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHH
Q 039706 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICF 880 (1166)
Q Consensus 801 y~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~ 880 (1166)
..........+...+..+...+.+.+|+..+.+++... |..+.++
T Consensus 237 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 281 (311)
T 3nf1_A 237 -------------------------------NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS----PTVTTTL 281 (311)
T ss_dssp --------------------------------CCHHHHHHHHHHC-------CCSCCCC---------C----HHHHHHH
T ss_pred -------------------------------hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC----chHHHHH
Confidence 00001112233344566677788888999999988766 8889999
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHhCCC
Q 039706 881 CNRAAAYKALRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 881 ~nlA~ay~~lGq~eeAi~~lekALeldP~ 909 (1166)
.++|.+|..+|++++|+.+|++++++.|.
T Consensus 282 ~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 282 KNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998774
No 87
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.59 E-value=2e-14 Score=161.38 Aligned_cols=235 Identities=12% Similarity=-0.031 Sum_probs=170.5
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHH
Q 039706 620 ALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECM 699 (1166)
Q Consensus 620 ~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~ 699 (1166)
..|++.+|+..+++|.+..+.. + +...+++++|..+|.++..+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---~------~~~~~~~~~A~~~~~~a~~~---------------------------- 45 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---F------MKWKPDYDSAASEYAKAAVA---------------------------- 45 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---S------SSCSCCHHHHHHHHHHHHHH----------------------------
T ss_pred ccchHHHHHHHHHHHHHHcccc---c------cCCCCCHHHHHHHHHHHHHH----------------------------
Confidence 4577888888888888776642 1 11147788888887765321
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccC
Q 039706 700 QRSAQLLQNKTSNDAEIALGVIDEALFISSY------SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANG 773 (1166)
Q Consensus 700 ~~a~~~l~~~~~gd~eeALe~lekALel~P~------~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g 773 (1166)
+...++|++|+.+|.+++.+.+. ...++..+|.+|..+|++++|+.+|++++.+.+.....
T Consensus 46 --------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~----- 112 (307)
T 2ifu_A 46 --------FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP----- 112 (307)
T ss_dssp --------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH-----
T ss_pred --------HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH-----
Confidence 12368888888888888877542 24688899999999999999999999999987643211
Q ss_pred cccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC
Q 039706 774 QSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG 853 (1166)
Q Consensus 774 ~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G 853 (1166)
......+..+|.+|.. |++++|+.+|++++...+ ........+..+.++|.++...|
T Consensus 113 --------------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~--------~~~~~~~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 113 --------------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE--------NEERLRQAAELIGKASRLLVRQQ 169 (307)
T ss_dssp --------------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH--------hCCChhHHHHHHHHHHHHHHHcC
Confidence 1112335679999988 999999999999743211 11112234677889999999999
Q ss_pred ChHHHHHHHHHHHhccccCC--chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH-----HHHHHHHHHHHhhC
Q 039706 854 RHSEAVEHYTAALSCTVESH--PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK-----AISRRATLYEMIRD 926 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~--p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~-----A~~~LA~ay~~lGd 926 (1166)
+|++|+.+|++++.+.+... +....++.++|.++..+|++++|+.+|++++ ++|.+.. .+..++.++ ..++
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d 247 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQD 247 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTC
T ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcC
Confidence 99999999999999874322 2234588899999999999999999999999 9997643 334444444 4455
Q ss_pred HHH
Q 039706 927 YDH 929 (1166)
Q Consensus 927 yee 929 (1166)
.+.
T Consensus 248 ~~~ 250 (307)
T 2ifu_A 248 EEQ 250 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 88
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.58 E-value=1.2e-14 Score=142.27 Aligned_cols=111 Identities=27% Similarity=0.419 Sum_probs=105.9
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHH
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKA 913 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A 913 (1166)
.++..+..++++|+.+++.|+|++|+.+|++||+++ |.++.+|+++|.+|..+|++++|+.+|++||+++|+++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 456778889999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|+.+|.+|..+|++++|+.+|+++++++|++.+..
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~ 118 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 99999999999999999999999999999987754
No 89
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=1.9e-14 Score=171.08 Aligned_cols=288 Identities=14% Similarity=-0.008 Sum_probs=200.4
Q ss_pred chhHHHHHHHHHhchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHH
Q 039706 593 NLASAETIAAQEACEKWRLSNRAATRMALG-----RMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIED---ASKY 664 (1166)
Q Consensus 593 ~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG-----~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~ee---Al~~ 664 (1166)
..|...+..|++. .+.+++++|.++...+ ++++|+..|++++... +..+++.||.+|...+...+ |...
T Consensus 55 ~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~ 131 (452)
T 3e4b_A 55 KQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQ 131 (452)
T ss_dssp -----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 4555666667766 6778888999777766 7889999999998854 45589999999998776544 4444
Q ss_pred HHHHHHcCCCchhHHHHHHHHHHHhhhHHhHH---------------HHHHHHHHHHHhhcCC---CHHHHHHHHHHHHH
Q 039706 665 FRMCLQSGSDVCVDQKIAVEASDGLQKAQKVS---------------ECMQRSAQLLQNKTSN---DAEIALGVIDEALF 726 (1166)
Q Consensus 665 fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~---------------e~~~~a~~~l~~~~~g---d~eeALe~lekALe 726 (1166)
+.++..... ......+..++.......... .++..++.++. ..| ++++|+.+|++++.
T Consensus 132 ~~~a~~~g~--~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~--~~g~~~~~~~A~~~~~~aa~ 207 (452)
T 3e4b_A 132 ISQWQAAGY--PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQ--KKQQPEQQAELLKQMEAGVS 207 (452)
T ss_dssp HHHHHHHTC--TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCcccHHHHHHHHHHHHH
Confidence 444443322 222333333222222111100 11222222222 367 99999999999999
Q ss_pred hCCChHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHH-H
Q 039706 727 ISSYSEKLLEMKAEALFML----RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKS-Y 801 (1166)
Q Consensus 727 l~P~~~~al~~lA~~y~~l----GdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~a-y 801 (1166)
..|.....++.+|.+|... +++++|+.+|+++. |.++.+ ++.+|.+ |
T Consensus 208 ~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a-------------------------~~~Lg~~~~ 259 (452)
T 3e4b_A 208 RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPAS-------------------------WVSLAQLLY 259 (452)
T ss_dssp TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHH-------------------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHH-------------------------HHHHHHHHH
Confidence 9999999999999999776 79999999999987 554332 4568887 4
Q ss_pred --HHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC-----ChHHHHHHHHHHHhccccCCc
Q 039706 802 --FTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG-----RHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 802 --~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G-----~yeEAie~y~kALel~~e~~p 874 (1166)
...+++++|+.+|+++... .....+..+|.+|. .| ++++|+.+|++|+ +
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa~~----------------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-------~ 315 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGRAA----------------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-------G 315 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-------T
T ss_pred hCCCCCCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-------C
Confidence 4689999999999997322 23556777899888 56 9999999999998 3
Q ss_pred hhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHh
Q 039706 875 FAAICFCNRAAAYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEM----IRDYDHAASDFHRLIALL 941 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~----lGdyeeAi~~yekALeL~ 941 (1166)
.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+++.+|.+|.. ..++.+|+.+|++|.+.-
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 467899999999887 3489999999999987 4578899999999985 469999999999998653
No 90
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=5.6e-14 Score=141.21 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+|+.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|+++++..|.+...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------- 81 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV------- 81 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-------
Confidence 4577899999999999999999999999999999999999999999999999999999999999875432211
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
.... ....|++++|+.++++++...|.+..++..+|.++..+|++++|+..+++++...|.+.
T Consensus 82 -------------~a~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-- 144 (186)
T 3as5_A 82 -------------LGLT--YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG-- 144 (186)
T ss_dssp -------------HHHH--HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--
T ss_pred -------------HHHH--HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch--
Confidence 1111 12369999999999999999999999999999999999999999999999999877542
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHES 819 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~ 819 (1166)
..+..+|.+|...|++++|+.++++++.
T Consensus 145 -----------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 145 -----------------------KVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1246799999999999999999999755
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.57 E-value=2.1e-14 Score=154.50 Aligned_cols=138 Identities=18% Similarity=0.066 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CC
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAI--------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSG-----SD 674 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALel--------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~-----P~ 674 (1166)
..+++++|.+|..+|++++|+..|++++.+ +|....++..+|.+|..+|++++|+.+|++++.+. ++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 466888999999999999999999999988 46678899999999999999999999999999862 21
Q ss_pred chhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHcc
Q 039706 675 VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFI--------SSYSEKLLEMKAEALFMLR 746 (1166)
Q Consensus 675 n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel--------~P~~~~al~~lA~~y~~lG 746 (1166)
++ .....+...+.. +...|++++|+.++++++.+ .|....++..+|.+|..+|
T Consensus 123 ~~-----------------~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 123 HP-----------------DVAKQLNNLALL--CQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp CH-----------------HHHHHHHHHHHH--HHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred Ch-----------------HHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 11 111122222222 23589999999999999998 7777889999999999999
Q ss_pred CHHHHHHHHHHHHHhccC
Q 039706 747 KYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 747 dyeeAi~~lekALel~p~ 764 (1166)
++++|+.++++++.+.+.
T Consensus 184 ~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998654
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.57 E-value=4.5e-15 Score=149.35 Aligned_cols=134 Identities=10% Similarity=-0.021 Sum_probs=119.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchh
Q 039706 797 IFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA 876 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~ 876 (1166)
||.++...|++++|+..++++ +...+.....++.+|.+|+..|+|++|+++|+++|+++ |.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a--------------~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~----p~~ 64 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGS--------------TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ----ERD 64 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHH--------------SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC
T ss_pred hHHHHHHcChHHHHHHHHHHh--------------cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC
Confidence 778888899999999999997 33445566777889999999999999999999999998 899
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH-HHHHHHHhhhhHHhh
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD-FHRLIALLTKQIEKS 948 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~-yekALeL~P~~~e~~ 948 (1166)
+.+|+++|.+|..+|++++|+..|+++++++|+++.+++.+|.+|..+|++++|... +++|++++|++....
T Consensus 65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999887765 599999999987643
No 93
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.57 E-value=8.1e-13 Score=170.14 Aligned_cols=289 Identities=11% Similarity=0.010 Sum_probs=191.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHH----------------HHH---------HHHHHHHcCChHH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPD------FLRV----------------QVR---------AANCHLALGEIED 660 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~------~~~A----------------~~~---------LA~lyl~lGd~ee 660 (1166)
.-.+.+|+..|.+.+|++.|++++ ++|. +... +.. +|.++..+|.+++
T Consensus 989 s~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEE 1067 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHH
Confidence 556788999999999999999998 5665 2111 111 3888899999999
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHH------HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHH
Q 039706 661 ASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVS------ECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKL 734 (1166)
Q Consensus 661 Al~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~------e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~a 734 (1166)
|...|+++.. ...+...+.+....+.++.+.. ..|..++.++ ...|++++|+..|.++ +++..
T Consensus 1068 Af~IYkKa~~----~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAq--l~~G~~kEAIdsYiKA-----dD~sa 1136 (1630)
T 1xi4_A 1068 AFAIFRKFDV----NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQ--LQKGMVKEAIDSYIKA-----DDPSS 1136 (1630)
T ss_pred HHHHHHHcCC----HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHH--HhCCCHHHHHHHHHhc-----CChHH
Confidence 9999999741 1222233332222232222211 2333334333 3589999999999776 77888
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccc-ccCc-cchhhhh-hhhhHHHHHHHHHHHHcCCHHHHH
Q 039706 735 LEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSM-ELDS-SESTKHV-SFRLWRCCLIFKSYFTLGRLEEAI 811 (1166)
Q Consensus 735 l~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l-~ld~-~~~~~~~-~~~~wr~~lLA~ay~~lGd~eeAl 811 (1166)
+..+|.++.++|+|++|+++|..+.+..+..... ..++.++ .++. ....... ......+..+|..++..|+|++|+
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id-t~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKARESYVE-TELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccccccc-HHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 8999999999999999999999988876432100 0011000 0000 0000000 000112345777888888888888
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhh
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALR 891 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lG 891 (1166)
.+|.++ ..|..+|.++.+.|+|++|++++++|.. ..+|.+.+.++...|
T Consensus 1216 ~~Y~kA----------------------~ny~rLA~tLvkLge~q~AIEaarKA~n---------~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1216 LLYNNV----------------------SNFGRLASTLVHLGEYQAAVDGARKANS---------TRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHhh----------------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC---------HHHHHHHHHHHhhhh
Confidence 888763 2455667888888888888888888743 357777788888888
Q ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 892 HITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 892 q~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+|..|..+... +..+| +.+..++..|...|.|++|+..|++++.+.+.+....
T Consensus 1265 Ef~LA~~cgl~-Iiv~~---deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred HHHHHHHHHHh-hhcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence 88888876653 44444 4555888999999999999999999999988876654
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.56 E-value=4.9e-15 Score=149.10 Aligned_cols=147 Identities=12% Similarity=-0.042 Sum_probs=126.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039706 737 MKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALER 816 (1166)
Q Consensus 737 ~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lek 816 (1166)
.+|.++...|++++|+..+++++...|+++.. ++.+|.+|+..|++++|+.+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~-------------------------~~~la~~y~~~~~~~~A~~~~~~ 56 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIK-------------------------GFYFAKLYYEAKEYDLAKKYICT 56 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTT-------------------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHH-------------------------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 46788888999999999999999887765432 46799999999999999999999
Q ss_pred HhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHH
Q 039706 817 HESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDA 896 (1166)
Q Consensus 817 Al~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeA 896 (1166)
++.. .+.....+..+|.++...|++++|+.+|+++++++ |.++.+|+++|.+|..+|++++|
T Consensus 57 al~~--------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 57 YINV--------------QERDPKAHRFLGLLYELEENTDKAVECYRRSVELN----PTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHH--------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHh--------------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHH
Confidence 8443 34456788889999999999999999999999998 89999999999999999999987
Q ss_pred HHH-HHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 897 IAD-CNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 897 i~~-lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
+.. +++|++++|+++.++..++.++...|+
T Consensus 119 a~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 119 AKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 765 599999999999999999999988775
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.55 E-value=7.1e-14 Score=155.85 Aligned_cols=170 Identities=15% Similarity=0.121 Sum_probs=151.5
Q ss_pred CCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCH
Q 039706 728 SSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRL 807 (1166)
Q Consensus 728 ~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~ 807 (1166)
.|.....++.+|..+...|++++|+..|++++.++|++..+ +..+|.+|...|++
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a-------------------------~~~la~~~~~~g~~ 167 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEI-------------------------GLLLAETLIALNRS 167 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHH-------------------------HHHHHHHHHHTTCH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhH-------------------------HHHHHHHHHHCCCH
Confidence 48899999999999999999999999999999999976432 46799999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHH
Q 039706 808 EEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAY 887 (1166)
Q Consensus 808 eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay 887 (1166)
++|+..|++++...+. ....+...+..+...+++++|+..|++++.++ |.+..+++++|.+|
T Consensus 168 ~~A~~~l~~~~~~~p~--------------~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~----P~~~~~~~~la~~l 229 (287)
T 3qou_A 168 EDAEAVLXTIPLQDQD--------------TRYQGLVAQIELLXQAADTPEIQQLQQQVAEN----PEDAALATQLALQL 229 (287)
T ss_dssp HHHHHHHTTSCGGGCS--------------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC----TTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhhcc--------------hHHHHHHHHHHHHhhcccCccHHHHHHHHhcC----CccHHHHHHHHHHH
Confidence 9999999986443332 23445556777888999999999999999998 99999999999999
Q ss_pred HHhhchhHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 888 KALRHITDAIADCNLAIALDGNY--LKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 888 ~~lGq~eeAi~~lekALeldP~~--~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
..+|++++|+..|.++++++|++ ..++..++.+|..+|+.++|+..|++++..
T Consensus 230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999 899999999999999999999999999864
No 96
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.55 E-value=2.6e-15 Score=153.49 Aligned_cols=139 Identities=25% Similarity=0.461 Sum_probs=99.2
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||++.++.++||++||++++++||||.+.. ...+.++.|.+.|++|++||++|+||.+
T Consensus 9 ~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~--------------~~~~~~~~a~~~f~~i~~Ay~~L~dp~~ 74 (155)
T 2l6l_A 9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTD--------------VPAGTVEECVQKFIEIDQAWKILGNEET 74 (155)
T ss_dssp CSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCC--------------CTTHHHHHHHHHHHHHHHHHHHSSSHHH
T ss_pred CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------CchhHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 35999999999999999999999999999999998632 1124456788999999999999999999
Q ss_pred hcccchhhhhhhhhccCCCCCCCCCCCCCCCCCccCCchhhhhhhhhcccCCCCCCCCceEEeeeeeeecccccccceee
Q 039706 1063 RSRYDLEEETRNTQKKQNGSNTSRTHAYAQNYPFERSSSRRQWREVRRSYDNSAARGDIYSISFNLRIASNKRCYRPFVT 1142 (1166)
Q Consensus 1063 R~~YD~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~rG~~~~~~~~lsf~ea~~G~~K~i~ 1142 (1166)
|+.||..+....... .+ ... ..+.++ ...|++....|.+.|+||+.|.+..... ..|
T Consensus 75 R~~Yd~~~~~~~~~~--~~---~~~----~~~~~~----~m~~~e~~~~f~~~CrCG~~f~i~~~~l----~~~------ 131 (155)
T 2l6l_A 75 KREYDLQRCEDDLRN--VG---PVD----AQVYLE----EMSWNEGDHSFYLSCRCGGKYSVSKDEA----EEV------ 131 (155)
T ss_dssp HCHHHHHHHHHHHHT--TC---SSS----EEEETT----TSEEETTTTEEEEECSSSCEEEEETTHH----HHC------
T ss_pred HHHHHHHcchhhccc--cc---ccc----ceeeHH----HhccccCCcEEEEcCCCCCeEEecHHHh----CCC------
Confidence 999998775432221 11 000 111111 2346555567888999999987654321 122
Q ss_pred ceeeeee-eecceeeeeec
Q 039706 1143 IREFMAC-ACQWRYQIVES 1160 (1166)
Q Consensus 1143 ~~~~~~C-~C~G~~q~~~~ 1160 (1166)
..+.| .|.=.++++..
T Consensus 132 --~~v~C~sCSl~~~v~~~ 148 (155)
T 2l6l_A 132 --SLISCDTCSLIIELLHY 148 (155)
T ss_dssp --CEEECSSSSCEEEEECC
T ss_pred --CEEECCCCceEEEEEEc
Confidence 34679 99988877643
No 97
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.54 E-value=9e-13 Score=169.71 Aligned_cols=265 Identities=14% Similarity=0.086 Sum_probs=181.3
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
...+.+|+++|.++...|++++|+..|.+| +++.+|+++|.++.++|++++|+++|..|++..++...+.. +..
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~-Laf 1175 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE-LIF 1175 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH-HHH
Confidence 345678999999999999999999999886 88899999999999999999999999999988765322111 222
Q ss_pred HHHHhhhHHhHHHH--------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHH
Q 039706 685 ASDGLQKAQKVSEC--------MQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCE 756 (1166)
Q Consensus 685 a~~~L~k~~~~~e~--------~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~le 756 (1166)
++..+.+...+..+ +...+.. ....|+|++|+.+|.++ ..|..+|.+|.++|++++|++.++
T Consensus 1176 aYAKl~rleele~fI~~~n~ad~~~iGd~--le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFINGPNNAHIQQVGDR--CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred HHHhhcCHHHHHHHHhCCCHHHHHHHHHH--HHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 22222222211111 1111111 22356666666666654 355556666666666666666666
Q ss_pred HHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch
Q 039706 757 QTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV 836 (1166)
Q Consensus 757 kALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~ 836 (1166)
++... . .|...+.++...|+|..|..+.... .
T Consensus 1246 KA~n~-----~-------------------------aWkev~~acve~~Ef~LA~~cgl~I------------------i 1277 (1630)
T 1xi4_A 1246 KANST-----R-------------------------TWKEVCFACVDGKEFRLAQMCGLHI------------------V 1277 (1630)
T ss_pred HhCCH-----H-------------------------HHHHHHHHHhhhhHHHHHHHHHHhh------------------h
Confidence 55211 0 1233455555566666665554321 1
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHH--HhhchhHHHHHHHHHHHhCC-----C
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYK--ALRHITDAIADCNLAIALDG-----N 909 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~--~lGq~eeAi~~lekALeldP-----~ 909 (1166)
..+..+..++..|...|.|++|+.+|+.+|.++ +.+...|..+|.+|. +.++..++++.|...+.+.| .
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le----raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e 1353 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE 1353 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHH
Confidence 123344467888899999999999999999888 778888877777766 55778889999998888877 7
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 910 YLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 910 ~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
.+..|..+..+|.+-++|+.|+..+-..
T Consensus 1354 ~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1354 QAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 7888999999999999999998655444
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.53 E-value=2.8e-14 Score=146.44 Aligned_cols=164 Identities=13% Similarity=0.040 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
..++.+|..++..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++.+.| ++.....+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~---- 81 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK---- 81 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH----
Confidence 34677999999999999999999999999999999999999999999999999999999999988 5422111100
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
+. ... .+....|+..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|.....
T Consensus 82 ----------~~----~~~---~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 144 (176)
T 2r5s_A 82 ----------LE----LHQ---QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDG 144 (176)
T ss_dssp ----------HH----HHH---HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTT
T ss_pred ----------HH----HHh---hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChH
Confidence 00 000 1122357999999999999999999999999999999999999999999998865321
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
..+..++.+|..+|+.++|+..|+++
T Consensus 145 -----------------------~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 145 -----------------------EVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp -----------------------HHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 11456899999999999999999986
No 99
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.52 E-value=2.7e-12 Score=146.52 Aligned_cols=252 Identities=11% Similarity=0.049 Sum_probs=178.8
Q ss_pred HHHHHHHcCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 614 RAATRMALGRMR-DALSDCMLAVAIDPDFLRVQVRAANCHLALGE----------IEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 614 rA~ayl~lG~y~-eAI~~fekALeldP~~~~A~~~LA~lyl~lGd----------~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
........|.+. +|+..+.++|.++|++..+|..++.++..++. +++++..+..++..+|.+...+...
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR 114 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 114 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344455678876 79999999999999999999999999998876 6788888888888888765443222
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC-HHHHHHHHHHHHHh
Q 039706 683 VEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRK-YEEVIQLCEQTFHF 761 (1166)
Q Consensus 683 ~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGd-yeeAi~~lekALel 761 (1166)
..++.......+++++.+++++++++|.+..+|..++.++..++. ++++++++.++++.
T Consensus 115 --------------------~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 115 --------------------CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp --------------------HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred --------------------HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 111111111257788888888888888888888888888888887 57888888888888
Q ss_pred ccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHH
Q 039706 762 AEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLC 841 (1166)
Q Consensus 762 ~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~ 841 (1166)
+|.+..+ | ..++.++..+.....+ +.
T Consensus 175 ~p~N~SA-----------------------W--~~R~~ll~~l~~~~~~-----------~~------------------ 200 (331)
T 3dss_A 175 NFSNYSS-----------------------W--HYRSCLLPQLHPQPDS-----------GP------------------ 200 (331)
T ss_dssp CSCCHHH-----------------------H--HHHHHHHHHHSCCC---------------------------------
T ss_pred CCCCHHH-----------------------H--HHHHHHHHHhhhcccc-----------cc------------------
Confidence 7766433 2 2233333332210000 00
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh-----------hchhHHHHHHHHHHHhCCCh
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL-----------RHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l-----------Gq~eeAi~~lekALeldP~~ 910 (1166)
.+ -...+.++++++++.++|.++ |.+..+|+.+..++... +.++++++.+.+++++.|++
T Consensus 201 ---~~--~~~~~~~~eEle~~~~ai~~~----P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 201 ---QG--RLPENVLLKELELVQNAFFTD----PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ---cc--ccchHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 00 001145889999999999998 99999997665555544 67899999999999999999
Q ss_pred HHHHHHHHHHHH---HhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 911 LKAISRRATLYE---MIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 911 ~~A~~~LA~ay~---~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
.-++..++.+.. ..+.+++....|.++++++|-...-+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 665555554433 25778899999999999999876544
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.51 E-value=1.6e-13 Score=152.97 Aligned_cols=168 Identities=14% Similarity=0.038 Sum_probs=141.5
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHH
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVE 684 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~E 684 (1166)
+.....++.+|..++..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++..+|+.....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~----- 188 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG----- 188 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH-----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH-----
Confidence 334456778999999999999999999999999999999999999999999999999999999999999632110
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 685 ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 685 a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
.... +.....++...|+..|++++..+|+++.+++.+|.+|..+|++++|+..|++++..+|.
T Consensus 189 ---------------~~~~--~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 189 ---------------LVAQ--IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp ---------------HHHH--HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------------HHHH--HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 0011 11112456778999999999999999999999999999999999999999999999886
Q ss_pred CCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 765 NSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 765 n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
+... ..+..++.+|..+|+.++|+..|+++
T Consensus 252 ~~~~-----------------------~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 252 AADG-----------------------QTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp GGGG-----------------------HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccc-----------------------hHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 5211 12456899999999999999999986
No 101
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-14 Score=136.57 Aligned_cols=72 Identities=32% Similarity=0.514 Sum_probs=64.0
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||.+.++.++|+++||+++++||||+++.. ..+.++|++|++||+||+||.+
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~~L~d~~~ 75 (99)
T 2yua_A 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS--------------------AEAAERFTRISQAYVVLGSATL 75 (99)
T ss_dssp SSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC--------------------SHHHHHHHHHHHHHHHTTSHHH
T ss_pred ccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------HHHHHHHHHHHHHHHHHCCHHH
Confidence 46999999999999999999999999999999998531 3578899999999999999999
Q ss_pred hcccchhhhhhh
Q 039706 1063 RSRYDLEEETRN 1074 (1166)
Q Consensus 1063 R~~YD~~~~~~~ 1074 (1166)
|+.||..+....
T Consensus 76 R~~YD~~l~~~e 87 (99)
T 2yua_A 76 RRKYDRGLLSDE 87 (99)
T ss_dssp HHHHHHTCCCHH
T ss_pred HHHHHHhccccc
Confidence 999998665433
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.50 E-value=5.8e-14 Score=144.10 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 039706 733 KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIA 812 (1166)
Q Consensus 733 ~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~ 812 (1166)
..++.+|.+++..|++++|+..|+++++++|++..+ +..+|.+|...|++++|+.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a-------------------------~~~la~~~~~~g~~~~A~~ 61 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDV-------------------------KLAKADCLLETKQFELAQE 61 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHH-------------------------HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH-------------------------HHHHHHHHHHCCCHHHHHH
Confidence 445666777777777777777777777776655322 3456777777777777777
Q ss_pred HHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHH-HHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhh
Q 039706 813 ALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNE-AFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALR 891 (1166)
Q Consensus 813 ~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~-~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lG 891 (1166)
.+++++...+ . ...+...+.+ +...+...+|+..|++++.++ |.+..+++++|.++..+|
T Consensus 62 ~~~~a~~~~p-~--------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~----P~~~~~~~~la~~~~~~g 122 (176)
T 2r5s_A 62 LLATIPLEYQ-D--------------NSYKSLIAKLELHQQAAESPELKRLEQELAAN----PDNFELACELAVQYNQVG 122 (176)
T ss_dssp HHTTCCGGGC-C--------------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhccC-C--------------hHHHHHHHHHHHHhhcccchHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcc
Confidence 7766533222 1 0111111212 122234456899999999998 889999999999999999
Q ss_pred chhHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 892 HITDAIADCNLAIALDGNY--LKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 892 q~eeAi~~lekALeldP~~--~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
++++|+..|+++++++|++ ..++..+|.+|..+|++++|+..|++++..
T Consensus 123 ~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 123 RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 9999999999999999986 669999999999999999999999999853
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.49 E-value=3.5e-13 Score=164.07 Aligned_cols=160 Identities=14% Similarity=0.020 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
.|++++|+..|+++++++|.+..++..+|.+|..+|++++|+..|+++++++|++..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----------------------- 58 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE----------------------- 58 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH-----------------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------------
Confidence 367888888888888888888888888888888888888888888888887765421
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
.+..+ |.++...|++++|+.+|+++++++
T Consensus 59 --~~~~l------------------------------------------------g~~~~~~g~~~~A~~~~~~al~~~- 87 (568)
T 2vsy_A 59 --AVARL------------------------------------------------GRVRWTQQRHAEAAVLLQQASDAA- 87 (568)
T ss_dssp --HHHHH------------------------------------------------HHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --HHHHH------------------------------------------------HHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 12234 555555555555555566666555
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHhhhhHHh
Q 039706 871 ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI---RDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 871 e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l---GdyeeAi~~yekALeL~P~~~e~ 947 (1166)
|.+..+|+++|.+|..+|++++|+..|+++++++|++..++..+|.+|..+ |++++|+..|++++++.|.....
T Consensus 88 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 88 ---PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence 555566666666666666666666666666666666666666666666666 66666666666666666655443
No 104
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.49 E-value=1.6e-12 Score=147.20 Aligned_cols=151 Identities=11% Similarity=-0.046 Sum_probs=127.1
Q ss_pred hHHHHHHHHHhchH--HHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CChHHHHH
Q 039706 595 ASAETIAAQEACEK--WRLSNRAATRMALG--RMRDALSDCMLAVAIDPDFLRVQVRAANCH----LAL---GEIEDASK 663 (1166)
Q Consensus 595 A~a~~~aAIe~~e~--~ay~nrA~ayl~lG--~y~eAI~~fekALeldP~~~~A~~~LA~ly----l~l---Gd~eeAl~ 663 (1166)
+...+..+|..+|. .+|+.|+.++..++ ++++|+..+.++|.++|++..+|..++.++ ..+ +++++++.
T Consensus 52 aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 52 ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 44555555555543 56778999999999 999999999999999999999999999999 777 89999999
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHH--HHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 664 YFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAE--IALGVIDEALFISSYSEKLLEMKAEA 741 (1166)
Q Consensus 664 ~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~e--eALe~lekALel~P~~~~al~~lA~~ 741 (1166)
.+.++++.+|.+..++....- ++. ..+.++ ++++.++++++.+|.+..+|..++.+
T Consensus 132 ~~~~~l~~~pkny~aW~~R~~--------------------vl~--~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 132 ILEAMLSSDPKNHHVWSYRKW--------------------LVD--TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHH--------------------HHH--HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHH--------------------HHH--HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999998665433221 121 245566 99999999999999999999999999
Q ss_pred HHHccC------HHHHHHHHHHHHHhccCCCC
Q 039706 742 LFMLRK------YEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 742 y~~lGd------yeeAi~~lekALel~p~n~~ 767 (1166)
+..+++ ++++++++.+++..+|.+..
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S 221 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPS 221 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCcc
Confidence 999998 99999999999999998754
No 105
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.1e-14 Score=131.56 Aligned_cols=69 Identities=43% Similarity=0.627 Sum_probs=63.3
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||++|||.+.++.++|+++||+++++||||+++. ..++++|++|++||++|+||.+
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------------------~~a~~~f~~i~~Ay~~L~d~~~ 64 (88)
T 2ctr_A 6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS---------------------PDAEAKFREIAEAYETLSDANR 64 (88)
T ss_dssp CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS---------------------HHHHHHHHHHHHHHHHHHSSHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hHHHHHHHHHHHHHHHHCCHHH
Confidence 4589999999999999999999999999999999752 4688999999999999999999
Q ss_pred hcccchhhhh
Q 039706 1063 RSRYDLEEET 1072 (1166)
Q Consensus 1063 R~~YD~~~~~ 1072 (1166)
|+.||..+..
T Consensus 65 R~~Yd~~~~~ 74 (88)
T 2ctr_A 65 RKEYDTLGHS 74 (88)
T ss_dssp HHHHHHTCHH
T ss_pred HHHHHHhCcc
Confidence 9999997754
No 106
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.47 E-value=4e-13 Score=149.72 Aligned_cols=211 Identities=12% Similarity=-0.029 Sum_probs=172.6
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHhccCCCCCccc-cCcccccCcc
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMK-------AEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDA-NGQSMELDSS 781 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~l-------A~~y~~lGdyeeAi~~lekALel~p~n~~a~~~-~g~~l~ld~~ 781 (1166)
..+++..|+..|.+++.++|...++|..+ +.++..++++.+++..+++.+.+.|....++.. .+..-.+...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 37999999999999999999999999999 899999999999999999999999988776554 3322001111
Q ss_pred chhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHH
Q 039706 782 ESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEH 861 (1166)
Q Consensus 782 ~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~ 861 (1166)
... +--....++.+|...|+|++|++.|+.+.. ..+..+ ..+.+|.++++.++|++|+.+
T Consensus 98 v~~-----r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------------~~p~~~-~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 98 VTS-----PLAITMGFAACEAAQGNYADAMEALEAAPV--------------AGSEHL-VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp CSS-----HHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------------TTCHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred cCC-----HhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------cCCchH-HHHHHHHHHHHcCCHHHHHHH
Confidence 111 111234578889999999999999988532 233445 677789999999999999999
Q ss_pred HHHHHhccccCCch-hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--CC-hHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 862 YTAALSCTVESHPF-AAICFCNRAAAYKALRHITDAIADCNLAIALD--GN-YLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 862 y~kALel~~e~~p~-~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--P~-~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
|+.++... .+. ...+++++|.++..+|++++|+.+|++++... |. ..++++.+|.++..+|+.++|...|+++
T Consensus 158 l~~a~~~~---d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 158 VKSAGKWP---DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HTTGGGCS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhhccC---CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99887642 133 24689999999999999999999999998654 55 7789999999999999999999999999
Q ss_pred HHHhhh
Q 039706 938 IALLTK 943 (1166)
Q Consensus 938 LeL~P~ 943 (1166)
+...|.
T Consensus 235 ~a~~P~ 240 (282)
T 4f3v_A 235 QTTHPE 240 (282)
T ss_dssp HHHSCC
T ss_pred HhcCCc
Confidence 999988
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.47 E-value=9.2e-14 Score=141.09 Aligned_cols=109 Identities=16% Similarity=0.042 Sum_probs=103.2
Q ss_pred hccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH
Q 039706 832 LAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL 911 (1166)
Q Consensus 832 L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~ 911 (1166)
+...+..+..++.+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|+|++|+..|+++++++|+++
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 33456778889999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.+|+++|.+|..+|++++|+..|++++++.|+.
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999998765
No 108
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.47 E-value=4.2e-13 Score=137.05 Aligned_cols=113 Identities=19% Similarity=0.248 Sum_probs=101.9
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC--------CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES--------HPFAAICFCNRAAAYKALRHITDAIADCNLAIAL- 906 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~--------~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel- 906 (1166)
...+..++++|+.++..|+|++|+..|++||+++|.. .|.++.+|+|+|.++..+|+|++|+.+|++||++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 4467778899999999999999999999999999541 1234569999999999999999999999999999
Q ss_pred ------CCChHHHH----HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 907 ------DGNYLKAI----SRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 907 ------dP~~~~A~----~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+|++..+| +++|.++..+|++++|+.+|++++++.|++....
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 99999999 9999999999999999999999999999976543
No 109
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.47 E-value=6e-13 Score=134.26 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=101.0
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--------cC------CchhHHHHHHHHHHHHHhhchhHHHHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--------ES------HPFAAICFCNRAAAYKALRHITDAIADCN 901 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--------e~------~p~~a~a~~nlA~ay~~lGq~eeAi~~le 901 (1166)
...+..+..+|+.++..|+|++|+.+|++||.+.+ .. .|....+|+++|.||..+|+|++|+.+|+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34577788899999999999999999999999811 00 27788999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 902 LAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 902 kALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
++|.++|.++.+|+.+|.+|..+|++++|+.+|++++++.|++.+
T Consensus 88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 132 (162)
T 3rkv_A 88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132 (162)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH
Confidence 999999999999999999999999999999999999999999863
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.47 E-value=5.2e-15 Score=169.17 Aligned_cols=150 Identities=16% Similarity=0.048 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCch-hhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 792 WRCCLIFKSYFTLGRLEEAIAALERHESGNGGKM-LESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 792 wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~-le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
..+..+|.+|+..|++++|+..|++++...+... +............+..+.++|.+++..|+|++|+.+|++||.++
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3457799999999999999999999877544421 00011111223346788899999999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH-HHHHHHHHHHhhhhH
Q 039706 871 ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA-ASDFHRLIALLTKQI 945 (1166)
Q Consensus 871 e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA-i~~yekALeL~P~~~ 945 (1166)
|.++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..++++++| ...|++++...+...
T Consensus 227 ---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 299 (336)
T 1p5q_A 227 ---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEE 299 (336)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 889999999999999999999999999999999999999999999999999999999 567888887655543
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.46 E-value=1.7e-12 Score=144.24 Aligned_cols=188 Identities=11% Similarity=0.062 Sum_probs=146.4
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHH
Q 039706 729 SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLE 808 (1166)
Q Consensus 729 P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~e 808 (1166)
|.....+...+..++..|+|++|+..+.++++..+.... ....+..+..+|.+|...|+++
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 132 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-------------------FQQFLQWQYYVAAYVLKKVDYE 132 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-------------------HHHHHHHHHHHHHHHHTSSCHH
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-------------------HHHHHHHHHHHHHHHhcCCCHH
Confidence 344456677889999999999999999999988653211 0111122355888899999999
Q ss_pred HHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc---cCCchhHHHHHHHHH
Q 039706 809 EAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV---ESHPFAAICFCNRAA 885 (1166)
Q Consensus 809 eAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~---e~~p~~a~a~~nlA~ 885 (1166)
+|+.++++++..... .......+..+..+|.+|...|+|++|+.+|++|+.+.. ........+++++|.
T Consensus 133 ~A~~~~~~al~~~~~--------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 133 YCILELKKLLNQQLT--------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HHHHHHHHHHTTCCC--------SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHH
Confidence 999999998653322 112223466788999999999999999999999996532 111123379999999
Q ss_pred HHHHhhchhHHHHHHHHHHHhCCC------hHHHHHHHHHHHHHhhCHHHH-HHHHHHHHHHhhh
Q 039706 886 AYKALRHITDAIADCNLAIALDGN------YLKAISRRATLYEMIRDYDHA-ASDFHRLIALLTK 943 (1166)
Q Consensus 886 ay~~lGq~eeAi~~lekALeldP~------~~~A~~~LA~ay~~lGdyeeA-i~~yekALeL~P~ 943 (1166)
+|..+|+|++|+.++++++.+.+. ...+++.+|.+|..+|++++| ..+|++|+.+...
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998643 378999999999999999999 7889999988644
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.46 E-value=7.5e-13 Score=129.39 Aligned_cols=117 Identities=18% Similarity=0.110 Sum_probs=100.8
Q ss_pred HhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 604 EACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 604 e~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
++..+.+|.++|.+|+..|+|++|+..|+++|+++|.+..+|+.+|.+|..+|++++|+..|+++++++|++...+..+
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l- 87 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK- 87 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH-
Confidence 3444456677999999999999999999999999999999999999999999999999999999999999965432222
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEAL 742 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y 742 (1166)
+.+ +...|++++|+..|+++++++|.+..++..++.|+
T Consensus 88 -------------------g~~--~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 88 -------------------AAC--LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp -------------------HHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred -------------------HHH--HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 222 23479999999999999999999999999988874
No 113
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.44 E-value=5.5e-14 Score=131.41 Aligned_cols=75 Identities=31% Similarity=0.558 Sum_probs=65.9
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||.+.++.++||++|++++++||||+++.. ...+.+..++++|++|++||++|+||.+
T Consensus 15 ~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~--------------~~~~~~~~~~~~f~~i~~Ay~~L~d~~~ 80 (94)
T 1wjz_A 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSAD--------------VPAGTMEECMQKFIEIDQAWKILGNEET 80 (94)
T ss_dssp CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTT--------------CCHHHHHHHHHHHHHHHHHHHHHSSSSH
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------CChhhhHHHHHHHHHHHHHHHHHCCHHH
Confidence 46999999999999999999999999999999997521 1234457889999999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 81 R~~YD~~l~ 89 (94)
T 1wjz_A 81 KKKYDLQRS 89 (94)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHcc
Confidence 999999764
No 114
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=8.8e-14 Score=126.74 Aligned_cols=70 Identities=46% Similarity=0.679 Sum_probs=63.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||++.++.++|+++|++++++||||+.+.. .+.++++|++|++||++|+||.+
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------------------~~~a~~~f~~i~~Ay~~L~d~~~ 68 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN-------------------KEEAERRFKQVAEAYEVLSDAKK 68 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT-------------------HHHHHHHHHHHHHHHHHHSSTTH
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------------------HHHHHHHHHHHHHHHHHHCCHHH
Confidence 36899999999999999999999999999999997521 24788999999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 69 R~~YD~~g~ 77 (82)
T 2ej7_A 69 RDIYDRYGS 77 (82)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHcCc
Confidence 999998654
No 115
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.4e-14 Score=131.60 Aligned_cols=70 Identities=51% Similarity=0.758 Sum_probs=63.2
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||++.++.++|+++|++++++||||+.+.. .+.++++|++|++||++|+||.+
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------------------~~~a~~~f~~i~~Ay~~L~d~~~ 68 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN-------------------KEEAEKKFKLVSEAYEVLSDSKK 68 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC-------------------SHHHHHHHHHHHHHHHHHHSHHH
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc-------------------HHHHHHHHHHHHHHHHHHCCHHH
Confidence 35899999999999999999999999999999997631 24788999999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 69 R~~Yd~~~~ 77 (92)
T 2dmx_A 69 RSLYDRAGC 77 (92)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHhCc
Confidence 999999764
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.44 E-value=9.7e-13 Score=160.13 Aligned_cols=165 Identities=15% Similarity=0.078 Sum_probs=106.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHH
Q 039706 621 LGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQ 700 (1166)
Q Consensus 621 lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~ 700 (1166)
.|++++|+..|+++++++|++..+++.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------------------------- 55 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-------------------------- 55 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT--------------------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------
Confidence 478899999999999999999999999999999999999999888887766554
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCc
Q 039706 701 RSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDS 780 (1166)
Q Consensus 701 ~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~ 780 (1166)
+..++..+|.+|..+|++++|+.+|+++++++|++..
T Consensus 56 ------------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------- 92 (568)
T 2vsy_A 56 ------------------------------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG------------- 92 (568)
T ss_dssp ------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------------
T ss_pred ------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH-------------
Confidence 4456677788888888888888888888877664311
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHH
Q 039706 781 SESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVE 860 (1166)
Q Consensus 781 ~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie 860 (1166)
.+..+|.++...|++++|++
T Consensus 93 ------------------------------------------------------------~~~~la~~~~~~g~~~~A~~ 112 (568)
T 2vsy_A 93 ------------------------------------------------------------IALWLGHALEDAGQAEAAAA 112 (568)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHcCCHHHHHH
Confidence 11223555566666666666
Q ss_pred HHHHHHhccccCCchhHHHHHHHHHHHHHh---hchhHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 861 HYTAALSCTVESHPFAAICFCNRAAAYKAL---RHITDAIADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 861 ~y~kALel~~e~~p~~a~a~~nlA~ay~~l---Gq~eeAi~~lekALeldP~~~~A~~~LA 918 (1166)
+|+++++++ |.+..++.++|.++..+ |++++|+..|+++++.+|....++..++
T Consensus 113 ~~~~al~~~----p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 113 AYTRAHQLL----PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 666666666 66666777777777777 7777777777777777777666666555
No 117
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.44 E-value=8.1e-14 Score=125.46 Aligned_cols=67 Identities=52% Similarity=0.739 Sum_probs=61.8
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||++.++.++|+++|++++++||||+.+. ..+++.|+.|++||++|+||.+|
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~~L~d~~~R 61 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---------------------PGAEEKFKEIAEAYDVLSDPRKR 61 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---------------------TTHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHHCCHHHH
Confidence 489999999999999999999999999999999752 25788999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||..+.
T Consensus 62 ~~Yd~~~~ 69 (77)
T 1hdj_A 62 EIFDRYGE 69 (77)
T ss_dssp HHHHHTCG
T ss_pred HHHHHHcc
Confidence 99999765
No 118
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=6.7e-14 Score=126.58 Aligned_cols=69 Identities=41% Similarity=0.589 Sum_probs=62.5
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||++.++.++|+++|++++++||||+.+.. +.++++|++|++||++|+||.+
T Consensus 6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~~L~d~~~ 65 (79)
T 2dn9_A 6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD--------------------PKAKEKFSQLAEAYEVLSDEVK 65 (79)
T ss_dssp CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC--------------------TTHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------HHHHHHHHHHHHHHHHHCCHHH
Confidence 46899999999999999999999999999999998631 3578899999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 66 R~~YD~~g~ 74 (79)
T 2dn9_A 66 RKQYDAYGS 74 (79)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhccC
Confidence 999998653
No 119
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.43 E-value=9e-13 Score=128.79 Aligned_cols=103 Identities=23% Similarity=0.380 Sum_probs=95.7
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh------
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY------ 910 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~------ 910 (1166)
..+.++.++|+.+++.|+|++|+.+|++||+++ |.++.+|+++|.+|..+|++++|+.+|+++|+++|++
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~----p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD----PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 456778899999999999999999999999998 8899999999999999999999999999999998865
Q ss_pred -HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 911 -LKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 911 -~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
..+|.++|.+|..+|++++|+..|++++++.|+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 468999999999999999999999999998764
No 120
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=125.11 Aligned_cols=68 Identities=47% Similarity=0.704 Sum_probs=62.3
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||++.++.++|+++|++++++||||+.+. ..+.+.|++|++||++|+||.+
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------------------~~~~~~f~~i~~Ay~~L~d~~~ 64 (78)
T 2ctp_A 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA---------------------PGATEAFKAIGTAYAVLSNPEK 64 (78)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS---------------------HHHHHHHHHHHHHHHHHTSHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHHCCHHH
Confidence 4689999999999999999999999999999999752 3578899999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 65 R~~YD~~~~ 73 (78)
T 2ctp_A 65 RKQYDQFGS 73 (78)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHcCc
Confidence 999998664
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.4e-12 Score=123.88 Aligned_cols=104 Identities=30% Similarity=0.371 Sum_probs=98.6
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
.+..+..+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 45677888999999999999999999999998 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 918 ATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
|.+|..+|++++|+..|++++++.|+..
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~~p~~~ 106 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTKDAEVN 106 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhCcccC
Confidence 9999999999999999999999995543
No 122
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.42 E-value=2.1e-12 Score=130.48 Aligned_cols=110 Identities=33% Similarity=0.325 Sum_probs=103.5
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
....+..+..+|.+++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 82 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW 82 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34567788889999999999999999999999998 88899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+.+|.+|..+|++++|+.+|++++++.|++.+.+
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 9999999999999999999999999999886543
No 123
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.42 E-value=8.3e-14 Score=124.07 Aligned_cols=66 Identities=44% Similarity=0.684 Sum_probs=59.3
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||++.++.++|+++|++++++||||+.+. +.+.|+.|++||++|+||.+
T Consensus 7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~-----------------------~~~~f~~i~~Ay~~L~d~~~ 63 (73)
T 2och_A 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD-----------------------GAEQFKQISQAYEVLSDEKK 63 (73)
T ss_dssp CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT-----------------------CHHHHHHHHHHHHHHTSHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC-----------------------HHHHHHHHHHHHHHHCCHHH
Confidence 3589999999999999999999999999999999752 24689999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 64 R~~YD~~g~ 72 (73)
T 2och_A 64 RQIYDQGGE 72 (73)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhcCC
Confidence 999998653
No 124
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.42 E-value=8.8e-12 Score=142.27 Aligned_cols=199 Identities=13% Similarity=0.050 Sum_probs=165.9
Q ss_pred HHHHHhhcCCCHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhccCCCCCccc
Q 039706 703 AQLLQNKTSNDAE-IALGVIDEALFISSYSEKLLEMKAEALFMLRK----------YEEVIQLCEQTFHFAEKNSPPLDA 771 (1166)
Q Consensus 703 ~~~l~~~~~gd~e-eALe~lekALel~P~~~~al~~lA~~y~~lGd----------yeeAi~~lekALel~p~n~~a~~~ 771 (1166)
..++.....|++. +|+.+++++|.++|.+..+|..++.++..++. +++++..+..++..+|++..+
T Consensus 34 ~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~a--- 110 (331)
T 3dss_A 34 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGT--- 110 (331)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH---
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHH---
Confidence 3333334466665 79999999999999999999999999998887 789999999999999987432
Q ss_pred cCcccccCccchhhhhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHH
Q 039706 772 NGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLG--RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEA 849 (1166)
Q Consensus 772 ~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lG--d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~ 849 (1166)
|...+.++..++ .+++++.++.+++. ..+....+|...+.++
T Consensus 111 ----------------------W~hR~wlL~~l~~~~~~~EL~~~~k~l~--------------~dprNy~AW~~R~~vl 154 (331)
T 3dss_A 111 ----------------------WHHRCWLLSRLPEPNWARELELCARFLE--------------ADERNFHCWDYRRFVA 154 (331)
T ss_dssp ----------------------HHHHHHHHHHCSSCCHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHhccCcccHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHH
Confidence 344566677777 48999999999744 3344456666678899
Q ss_pred HHcCC-hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh--------------hchhHHHHHHHHHHHhCCChHHHH
Q 039706 850 FQAGR-HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL--------------RHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 850 ~~~G~-yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l--------------Gq~eeAi~~lekALeldP~~~~A~ 914 (1166)
...+. ++++++++.++|..+ |.+..+|++++.++..+ +.++++++++.++|.++|++..+|
T Consensus 155 ~~l~~~~~eel~~~~~~I~~~----p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW 230 (331)
T 3dss_A 155 AQAAVAPAEELAFTDSLITRN----FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 230 (331)
T ss_dssp HHTTCCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHhCcCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 99998 699999999999998 99999999999999988 779999999999999999999999
Q ss_pred HHHHHHHHHh-----------hCHHHHHHHHHHHHHHhhhh
Q 039706 915 SRRATLYEMI-----------RDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 915 ~~LA~ay~~l-----------GdyeeAi~~yekALeL~P~~ 944 (1166)
+.+..++... +.+++++..+++++++.|++
T Consensus 231 ~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 231 FYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp HHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 8666555544 56899999999999999876
No 125
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.1e-13 Score=129.00 Aligned_cols=66 Identities=44% Similarity=0.711 Sum_probs=60.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||.+.++.++|+++|++++++||||+++. ..++|++|++||++|+||.+|
T Consensus 8 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----------------------~~~~f~~i~~Ay~~L~d~~~R 64 (92)
T 2o37_A 8 TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG-----------------------DTEKFKEISEAFEILNDPQKR 64 (92)
T ss_dssp CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC-----------------------CHHHHHHHHHHHHHHTSHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------------------hHHHHHHHHHHHHHHCCHHHH
Confidence 589999999999999999999999999999999752 235899999999999999999
Q ss_pred cccchhhhh
Q 039706 1064 SRYDLEEET 1072 (1166)
Q Consensus 1064 ~~YD~~~~~ 1072 (1166)
+.||..+..
T Consensus 65 ~~YD~~~~~ 73 (92)
T 2o37_A 65 EIYDQYGLE 73 (92)
T ss_dssp HHHHHHCHH
T ss_pred HHHHHHCHH
Confidence 999997753
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.41 E-value=1.5e-12 Score=130.83 Aligned_cols=109 Identities=16% Similarity=0.071 Sum_probs=103.0
Q ss_pred cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHH
Q 039706 834 GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKA 913 (1166)
Q Consensus 834 ~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A 913 (1166)
..+.....+..+|..++..|+|++|+..|++++.++ |.++.+|+++|.+|..+|++++|+..|++++.++|+++.+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 91 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 345677788889999999999999999999999998 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
++.+|.+|..+|++++|+..|++++++.|.+.+
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 999999999999999999999999999997654
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.41 E-value=2.5e-12 Score=142.97 Aligned_cols=194 Identities=10% Similarity=0.033 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+++.+|.+++..|+|++|+..|++++.++|++..+++.+|.+|..+|++++|+..|+++++++|+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------- 70 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------------- 70 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------
Confidence 4567789999999999999999999999999999999999999999999999999888887766554
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
+..+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 71 -------------------------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 107 (281)
T 2c2l_A 71 -------------------------------------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107 (281)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh
Confidence 4567788999999999999999999999999997643
Q ss_pred CccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhH
Q 039706 768 PLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGN 847 (1166)
Q Consensus 768 a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~ 847 (1166)
.+. ..+|.... ..++...
T Consensus 108 ~~~------------------~~~~~~~~----------~~~~~~~---------------------------------- 125 (281)
T 2c2l_A 108 NFG------------------DDIPSALR----------IAKKKRW---------------------------------- 125 (281)
T ss_dssp CCC------------------SHHHHHHH----------HHHHHHH----------------------------------
T ss_pred hHH------------------HHHHHHHH----------HHHHHHH----------------------------------
Confidence 200 00011000 0000000
Q ss_pred HHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh-hC
Q 039706 848 EAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI-RD 926 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l-Gd 926 (1166)
........ +....+...++..+ .|++++|++.++++++++|.+......++.++... +.
T Consensus 126 --------------~~~~~~~~----~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 185 (281)
T 2c2l_A 126 --------------NSIEERRI----HQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKY 185 (281)
T ss_dssp --------------HHHHHTCC----CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHH----hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHH
Confidence 00001111 23333334444433 68999999999999999999888888888777766 66
Q ss_pred HHHHHHHHHHHHH
Q 039706 927 YDHAASDFHRLIA 939 (1166)
Q Consensus 927 yeeAi~~yekALe 939 (1166)
+++|...|+++.+
T Consensus 186 ~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 186 MADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHHSSC
T ss_pred HHHHHHHHHhhhc
Confidence 8888888887754
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.41 E-value=1.1e-12 Score=146.32 Aligned_cols=229 Identities=10% Similarity=-0.082 Sum_probs=169.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRA-------ANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~L-------A~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
++.+|.-+ .-+++..|+..|.+++.++|+...+|+.+ +.++..++++.+++..+++++.+.|.....+..+
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~- 87 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI- 87 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC-
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc-
Confidence 34556665 58999999999999999999999999999 8999999999999999999999988732211000
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 039706 684 EASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS-SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA 762 (1166)
Q Consensus 684 Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~-P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~ 762 (1166)
.|-|-+ |..- -.-.+++..+|.+|...|+|++|++.|..++...
T Consensus 88 ---------------------------~g~y~~--------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~ 132 (282)
T 4f3v_A 88 ---------------------------GGLYGD--------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG 132 (282)
T ss_dssp ---------------------------CTTTCC--------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT
T ss_pred ---------------------------CCcccc--------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 000000 0000 0124567778888888888888888887766544
Q ss_pred cCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHH
Q 039706 763 EKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCR 842 (1166)
Q Consensus 763 p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l 842 (1166)
|... ..+.+|.+++..+++++|+.+|+++.... ........+
T Consensus 133 p~~~--------------------------~~~~~a~l~~~~~r~~dA~~~l~~a~~~~------------d~~~~~~a~ 174 (282)
T 4f3v_A 133 SEHL--------------------------VAWMKAVVYGAAERWTDVIDQVKSAGKWP------------DKFLAGAAG 174 (282)
T ss_dssp CHHH--------------------------HHHHHHHHHHHTTCHHHHHHHHTTGGGCS------------CHHHHHHHH
T ss_pred CchH--------------------------HHHHHHHHHHHcCCHHHHHHHHHHhhccC------------CcccHHHHH
Confidence 3211 13557788888889998888887642211 111123466
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCch-hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPF-AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~-~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
+.+|.++..+|++++|+.+|++++... ..|. ...+++++|.|+.++|+.++|+..|++++..+|+ ..++..|
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~--~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSP--AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTST--TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 778999999999999999999998532 1133 6779999999999999999999999999999998 7766555
No 129
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=1.3e-13 Score=127.46 Aligned_cols=68 Identities=43% Similarity=0.646 Sum_probs=62.5
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||.+.++.++|+++||+++++||||+++. ..+++.|++|++||++|+||.+
T Consensus 16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------------------~~~~~~f~~i~~Ay~~L~d~~~ 74 (88)
T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD---------------------PGAEDRFIQISKAYEILSNEEK 74 (88)
T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS---------------------TTHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHHHCCHHH
Confidence 4699999999999999999999999999999999762 3578899999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 75 R~~YD~~g~ 83 (88)
T 2cug_A 75 RTNYDHYGS 83 (88)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHcCC
Confidence 999999764
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.41 E-value=6e-12 Score=139.80 Aligned_cols=183 Identities=11% Similarity=0.070 Sum_probs=143.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 039706 735 LEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAAL 814 (1166)
Q Consensus 735 l~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~l 814 (1166)
+...+..++..++|++|+..+++++...+..+. ....+..+..+|.++...+++++|+.+|
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~Ai~~~ 138 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-------------------FQQFLQWQYYVAAYVLKKVDYEYCILEL 138 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHH-------------------HHHHHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChH-------------------HHHHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 344578889999999999999999886543211 0011122345788888889999999999
Q ss_pred HHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc---cCCchhHHHHHHHHHHHHHhh
Q 039706 815 ERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV---ESHPFAAICFCNRAAAYKALR 891 (1166)
Q Consensus 815 ekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~---e~~p~~a~a~~nlA~ay~~lG 891 (1166)
++++..... .......+..+..+|.+|...|+|++|+.+|++|+++.. ...+..+.+++++|.+|..+|
T Consensus 139 ~~al~~~~~--------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 3u3w_A 139 KKLLNQQLT--------GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp HHHHHTCCC--------CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcc--------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh
Confidence 998663222 111223466788999999999999999999999996432 234566779999999999999
Q ss_pred chhHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHhhhh
Q 039706 892 HITDAIADCNLAIALDGNY------LKAISRRATLYEMIR-DYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 892 q~eeAi~~lekALeldP~~------~~A~~~LA~ay~~lG-dyeeAi~~yekALeL~P~~ 944 (1166)
+|++|+.++++|+++.+.. +.+++.+|.+|..+| ++++|+..|++|+.+....
T Consensus 211 ~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 211 RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999986443 789999999999999 5799999999999986643
No 131
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=130.26 Aligned_cols=69 Identities=49% Similarity=0.657 Sum_probs=62.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||.+.++.++||++|++++++||||+.+.. .+.+++.|++|++||++|+||.+|
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-------------------~~~a~~~f~~I~~AY~vL~d~~~R 62 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN-------------------KEFAEKKFKEVAEAYEVLSDKHKR 62 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC-------------------CHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc-------------------HHHHHHHHHHHHHHHHHHCCHHHH
Confidence 3899999999999999999999999999999997631 246889999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||..+.
T Consensus 63 ~~YD~~g~ 70 (99)
T 2lgw_A 63 EIYDRYGR 70 (99)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhCc
Confidence 99999765
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.40 E-value=1.1e-11 Score=142.27 Aligned_cols=241 Identities=12% Similarity=0.026 Sum_probs=179.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhH
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG-EIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKA 692 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG-d~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~ 692 (1166)
+..++...+..++|+..+.++|.++|++..+|..++.++..++ .+++++..+.++|..+|.+...+....-
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w-------- 131 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL-------- 131 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH--------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH--------
Confidence 4445555667789999999999999999999999999999999 5999999999999999997655433222
Q ss_pred HhHHHHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHH--------HHHHHHHHHHHhcc
Q 039706 693 QKVSECMQRSAQLLQNKTSN-DAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYE--------EVIQLCEQTFHFAE 763 (1166)
Q Consensus 693 ~~~~e~~~~a~~~l~~~~~g-d~eeALe~lekALel~P~~~~al~~lA~~y~~lGdye--------eAi~~lekALel~p 763 (1166)
++... .+ +++++++.++++|+++|.+..+|..++.++..++.++ ++++++.++++.+|
T Consensus 132 ------------lL~~l-~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp 198 (349)
T 3q7a_A 132 ------------LLDRI-SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG 198 (349)
T ss_dssp ------------HHHHH-CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT
T ss_pred ------------HHHHh-cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC
Confidence 22111 13 6789999999999999999999999999999999888 99999999999988
Q ss_pred CCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHh
Q 039706 764 KNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRK 843 (1166)
Q Consensus 764 ~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~ 843 (1166)
.|..+ | ...+.++..++.+.
T Consensus 199 ~N~SA-----------------------W--~~R~~lL~~l~~~~----------------------------------- 218 (349)
T 3q7a_A 199 RNNSA-----------------------W--GWRWYLRVSRPGAE----------------------------------- 218 (349)
T ss_dssp TCHHH-----------------------H--HHHHHHHTTSTTCC-----------------------------------
T ss_pred CCHHH-----------------------H--HHHHHHHHhccccc-----------------------------------
Confidence 76433 2 22333333322200
Q ss_pred hhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhch--------------------hHHHHHHHHH
Q 039706 844 SAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHI--------------------TDAIADCNLA 903 (1166)
Q Consensus 844 ~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~--------------------eeAi~~lekA 903 (1166)
+ ....+++++++++++|.++ |.+..+|+++..++...|+. ..-...|...
T Consensus 219 --~----~~~~~~eELe~~~~aI~~~----P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
T 3q7a_A 219 --T----SSRSLQDELIYILKSIHLI----PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM 288 (349)
T ss_dssp --C----CHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred --c----chHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence 0 0012678999999999988 88999999988888887764 2333333333
Q ss_pred HHhC------CChHHHHHHHHHHHHHhhCHHHHHHHHHHHH-HHhhhhH
Q 039706 904 IALD------GNYLKAISRRATLYEMIRDYDHAASDFHRLI-ALLTKQI 945 (1166)
Q Consensus 904 Leld------P~~~~A~~~LA~ay~~lGdyeeAi~~yekAL-eL~P~~~ 945 (1166)
+... +....++..+|.+|...++.++|+..|+.+. +.+|-..
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~ 337 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRA 337 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHH
Confidence 3322 4678899999999999999999999998876 4444433
No 133
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=132.75 Aligned_cols=69 Identities=30% Similarity=0.488 Sum_probs=63.1
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..+||.+|||.+.++.++||++||+++++|||||++.. ..++++|++|++||++|+||.+
T Consensus 19 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~~ 78 (112)
T 2ctq_A 19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN--------------------PKAVETFQKLQKAKEILTNEES 78 (112)
T ss_dssp CCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC--------------------STHHHHHHHHHHHHHHHHSHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHHHCCHHH
Confidence 46999999999999999999999999999999998621 3688999999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|+.||..+.
T Consensus 79 R~~YD~~~~ 87 (112)
T 2ctq_A 79 RARYDHWRR 87 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999999775
No 134
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.39 E-value=9.4e-14 Score=132.15 Aligned_cols=69 Identities=41% Similarity=0.681 Sum_probs=62.7
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||++|||++.++.++||++||+++++||||+++.. ..++++|++|++||++|+||.+|
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~~L~d~~~R 62 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD--------------------KEAEAKFKEIKEAYEVLTDSQKR 62 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT--------------------CTHHHHHHHHTTTTTSTTCSHHH
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHHHCCHHHH
Confidence 4899999999999999999999999999999998621 35788999999999999999999
Q ss_pred cccchhhhh
Q 039706 1064 SRYDLEEET 1072 (1166)
Q Consensus 1064 ~~YD~~~~~ 1072 (1166)
+.||..+..
T Consensus 63 ~~YD~~~~~ 71 (103)
T 1bq0_A 63 AAYDQYGHA 71 (103)
T ss_dssp HHTTTSTTT
T ss_pred HHHHHHhhh
Confidence 999997753
No 135
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.39 E-value=7.3e-12 Score=133.07 Aligned_cols=176 Identities=8% Similarity=-0.098 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHH
Q 039706 715 EIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRC 794 (1166)
Q Consensus 715 eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~ 794 (1166)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++.. ++ ..+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~-------------------------~a~ 53 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DG-------------------------DAL 53 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CH-------------------------HHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH-------------------------HHH
Confidence 3578888888876 688999999999999999999999999998752 11 124
Q ss_pred HHHHHHHHHcC----CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHH----cCChHHHHHHHHHHH
Q 039706 795 CLIFKSYFTLG----RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQ----AGRHSEAVEHYTAAL 866 (1166)
Q Consensus 795 ~lLA~ay~~lG----d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~----~G~yeEAie~y~kAL 866 (1166)
..+|.+|.. + ++++|+.+|+++... .....+..+|.+|.. .+++++|+.+|++|+
T Consensus 54 ~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 116 (212)
T 3rjv_A 54 ALLAQLKIR-NPQQADYPQARQLAEKAVEA----------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAA 116 (212)
T ss_dssp HHHHHHTTS-STTSCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 668888887 7 999999999997322 235567788999987 899999999999999
Q ss_pred hccccCCc--hhHHHHHHHHHHHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh-h-----CHHHHHHHH
Q 039706 867 SCTVESHP--FAAICFCNRAAAYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEMI-R-----DYDHAASDF 934 (1166)
Q Consensus 867 el~~e~~p--~~a~a~~nlA~ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l-G-----dyeeAi~~y 934 (1166)
+.. + ..+.+++++|.+|.. .+++++|+.+|++++++ |.++.+++.+|.+|... | ++++|+.+|
T Consensus 117 ~~~----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~ 191 (212)
T 3rjv_A 117 RDS----ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWL 191 (212)
T ss_dssp SST----TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHH
T ss_pred HcC----CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence 876 4 458999999999999 88999999999999999 77788999999999865 3 899999999
Q ss_pred HHHHHHh
Q 039706 935 HRLIALL 941 (1166)
Q Consensus 935 ekALeL~ 941 (1166)
+++++.-
T Consensus 192 ~~A~~~g 198 (212)
T 3rjv_A 192 NVSCLEG 198 (212)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 9999873
No 136
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.38 E-value=6.8e-12 Score=124.08 Aligned_cols=110 Identities=21% Similarity=0.144 Sum_probs=103.3
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~ 912 (1166)
...+.....+..+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+..|++++.++|+++.
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD----HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 3455667788889999999999999999999999998 889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+++.+|.+|..+|++++|+..|++++++.|.+.+
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999999999997654
No 137
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.38 E-value=2.1e-11 Score=115.16 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+|+.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+.+|++++...|.+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------- 73 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY-------- 73 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH--------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHH--------
Confidence 357889999999999999999999999999999999999999999999999999999999999887532211
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
..... ....|++++|+..+++++...|....++..+|.++..+|++++|+..+++++...|.
T Consensus 74 ------------~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 74 ------------NLGNA--YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp ------------HHHHH--HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred ------------HHHHH--HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 11111 235799999999999999999999999999999999999999999999999998774
No 138
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=3e-13 Score=129.94 Aligned_cols=70 Identities=39% Similarity=0.609 Sum_probs=63.3
Q ss_pred ccchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 983 PLDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
..++|.+|||.+.++.++||++|++++++||||+++.. +.+.++|++|++||++|+||.+
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~vL~d~~~ 75 (109)
T 2ctw_A 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN--------------------PEAADKFKEINNAHAILTDATK 75 (109)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC--------------------HHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHHHcCHHH
Confidence 46899999999999999999999999999999998621 3688999999999999999999
Q ss_pred hcccchhhhh
Q 039706 1063 RSRYDLEEET 1072 (1166)
Q Consensus 1063 R~~YD~~~~~ 1072 (1166)
|+.||..+..
T Consensus 76 R~~YD~~g~~ 85 (109)
T 2ctw_A 76 RNIYDKYGSL 85 (109)
T ss_dssp HHHHHHTCHH
T ss_pred HHHHHHhccc
Confidence 9999997653
No 139
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.37 E-value=4.2e-13 Score=157.65 Aligned_cols=262 Identities=14% Similarity=0.095 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
++.+|+.+|.+++..|++++|+..|.++ .+..+|..++.++..+|++++|+.+++.+++..++ +.....+..++
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y 104 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHH
Confidence 3467899999999999999999999774 45668999999999999999999999999875333 11111222233
Q ss_pred HHhhhHHhHHH--------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 687 DGLQKAQKVSE--------CMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 687 ~~L~k~~~~~e--------~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
..+++...+.. .+...+.. ....|.|++|+.+|.++ ..|..+|.+|.++|+|++|++.++++
T Consensus 105 ~Klg~l~e~e~f~~~pn~~a~~~IGd~--~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 105 AKTNRLAELEEFINGPNNAHIQQVGDR--CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp ----CHHHHTTTTTCC------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHcCCcHHHHHHHHHH--HHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 33332222221 12222222 22366777777777655 35666777777777777777777766
Q ss_pred HHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHH
Q 039706 759 FHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRE 838 (1166)
Q Consensus 759 Lel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~ 838 (1166)
. ++ ..|..+..++...|+++.|..+... +...+..
T Consensus 175 ~--~~----------------------------~~Wk~v~~aCv~~~ef~lA~~~~l~---------------L~~~ad~ 209 (449)
T 1b89_A 175 N--ST----------------------------RTWKEVCFACVDGKEFRLAQMCGLH---------------IVVHADE 209 (449)
T ss_dssp T--CH----------------------------HHHHHHHHHHHHTTCHHHHHHTTTT---------------TTTCHHH
T ss_pred C--Cc----------------------------hhHHHHHHHHHHcCcHHHHHHHHHH---------------HHhCHhh
Confidence 1 11 1133455666677777777443322 1122222
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHH--HhhchhHHHHHHHHHHHhCC-----ChH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYK--ALRHITDAIADCNLAIALDG-----NYL 911 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~--~lGq~eeAi~~lekALeldP-----~~~ 911 (1166)
+..+...|.+.|++++|+.+|+++|.++ +....+|..+|.+|. +.++..++++.|...+.+.| ..+
T Consensus 210 ---l~~lv~~Yek~G~~eEai~lLe~aL~le----~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~ 282 (449)
T 1b89_A 210 ---LEELINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA 282 (449)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHTTST----TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHCCCHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 2245677888888888888888888877 667777877777775 55678888888887777777 777
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
..|..+..+|...++|+.|+..+-.
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHh
Confidence 7888888888888888888875543
No 140
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=1.1e-11 Score=117.27 Aligned_cols=132 Identities=24% Similarity=0.299 Sum_probs=118.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
+..+|.++...|++++|+..+++++...+ .....+..+|.++...|++++|+.+|++++...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP--------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC--------------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----
Confidence 45689999999999999999999744322 234566778999999999999999999999987
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
|....++..+|.++...|++++|+..+++++...|.+..++..+|.+|...|++++|+..|++++.+.|.
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7778899999999999999999999999999999999999999999999999999999999999998775
No 141
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.35 E-value=6.2e-12 Score=131.28 Aligned_cols=130 Identities=12% Similarity=0.044 Sum_probs=118.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
++.+|.+++..|++++|+..|++++. . ....+..+|.++...|++++|+.+|++++.++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~--------------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQD--------------P---HSRICFNIGCMYTILKNMTEAEKAFTRSINRD---- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSS--------------C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcC--------------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 56789999999999999999998631 1 24577888999999999999999999999998
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH----------------HHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL----------------KAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~----------------~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
|..+.+|+++|.+|..+|++++|+.+|++++++.|.+. .+++.+|.+|..+|++++|+..|+++
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88899999999999999999999999999999877655 99999999999999999999999999
Q ss_pred HHHhhhh
Q 039706 938 IALLTKQ 944 (1166)
Q Consensus 938 LeL~P~~ 944 (1166)
+++.|+.
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9998875
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.34 E-value=7e-12 Score=127.19 Aligned_cols=99 Identities=10% Similarity=0.031 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGL 689 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L 689 (1166)
+++++|.+++.+|+|++|+..|++++.++|.++.+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P---------------- 101 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK---------------- 101 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC----------------
Confidence 3455677777777777777777777777777777777777777777777777777666665555
Q ss_pred hhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 690 QKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 690 ~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
.++.+++.+|.+|..+|++++|+..|++++++.|+
T Consensus 102 ----------------------------------------~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 102 ----------------------------------------NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp ----------------------------------------SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ----------------------------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 45566777777777777777777777777777653
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.33 E-value=9.3e-11 Score=130.17 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=136.5
Q ss_pred hcCCCHHHHHHHHHHHHHhCCChHH------HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 709 KTSNDAEIALGVIDEALFISSYSEK------LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 709 ~~~gd~eeALe~lekALel~P~~~~------al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
...+++++|+..+++++...+..+. ++..+|.++...+++++|+.++++++.+.+.....
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-------------- 151 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-------------- 151 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT--------------
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH--------------
Confidence 3489999999999999998776544 34458888888899999999999999976543221
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh-ccchHHHHHHhhhhHHHHHcCChHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL-AGTVRELLCRKSAGNEAFQAGRHSEAVEH 861 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L-~~~~~~a~~l~~lG~~~~~~G~yeEAie~ 861 (1166)
+..+..+..+|.+|..+|++++|+.+|++++. ....+ ......+..+.++|.+|...|+|++|+.+
T Consensus 152 -----~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 152 -----YQNLYIENAIANIYAENGYLKKGIDLFEQILK--------QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp -----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11223467799999999999999999999843 11111 23345566889999999999999999999
Q ss_pred HHHHHhcccc--CCchhHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHhC
Q 039706 862 YTAALSCTVE--SHPFAAICFCNRAAAYKALRH-ITDAIADCNLAIALD 907 (1166)
Q Consensus 862 y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq-~eeAi~~lekALeld 907 (1166)
|++|+++.+. .....+.+|+++|.+|..+|+ +++|+.+|++|+.+.
T Consensus 219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999998742 234458899999999999995 699999999999763
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=1.2e-12 Score=160.44 Aligned_cols=189 Identities=14% Similarity=0.046 Sum_probs=164.6
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhccCCCCCccccCcccccCcc
Q 039706 712 NDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRK----------YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSS 781 (1166)
Q Consensus 712 gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGd----------yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~ 781 (1166)
...++|++.++++|.++|++..+|..++.++..+++ +++|+..++++++.+|++..+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~a------------- 109 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGT------------- 109 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH-------------
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHH-------------
Confidence 345688999999999999999999999999999999 999999999999999987432
Q ss_pred chhhhhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC-ChHHH
Q 039706 782 ESTKHVSFRLWRCCLIFKSYFTLG--RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG-RHSEA 858 (1166)
Q Consensus 782 ~~~~~~~~~~wr~~lLA~ay~~lG--d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G-~yeEA 858 (1166)
|...+.++..++ ++++|+..+.+++.. +++...+|..++.++...+ .+++|
T Consensus 110 ------------W~hR~w~l~~l~~~~~~~el~~~~k~l~~--------------d~~N~~aW~~R~~~l~~l~~~~~~e 163 (567)
T 1dce_A 110 ------------WHHRCWLLSRLPEPNWARELELCARFLEA--------------DERNFHCWDYRRFVAAQAAVAPAEE 163 (567)
T ss_dssp ------------HHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------------CTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred ------------HHHHHHHHHHcccccHHHHHHHHHHHHhh--------------ccccccHHHHHHHHHHHcCCChHHH
Confidence 445677778888 779999999998443 3344566777799999999 99999
Q ss_pred HHHHHHHHhccccCCchhHHHHHHHHHHHHHh--------------hchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 859 VEHYTAALSCTVESHPFAAICFCNRAAAYKAL--------------RHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 859 ie~y~kALel~~e~~p~~a~a~~nlA~ay~~l--------------Gq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
+++++++|+.+ |.+..+|++++.++..+ +.+++|++++.+||.++|++..+|+.++.++...
T Consensus 164 l~~~~~~I~~~----p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 164 LAFTDSLITRN----FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp HHHHHTTTTTT----CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHC----CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcC
Confidence 99999999988 99999999999999986 7789999999999999999999999999999999
Q ss_pred hCHHH------------HHHHHHHHHHHhhh
Q 039706 925 RDYDH------------AASDFHRLIALLTK 943 (1166)
Q Consensus 925 Gdyee------------Ai~~yekALeL~P~ 943 (1166)
+++++ |+..|.+++.+.|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 240 EPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred CCccceeeeeeccCCceEEEEeccceecccc
Confidence 98777 66667777777765
No 145
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.32 E-value=5.3e-13 Score=128.25 Aligned_cols=72 Identities=31% Similarity=0.485 Sum_probs=64.6
Q ss_pred ccchhhhcccCCCC-CHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 983 PLDMYLILGVESSV-SVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 983 ~~dyY~iLGl~~~a-s~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
..+||.+|||++.+ +.++|+++||+++++||||+.+. ...++.+++.|++|++||++|+||.
T Consensus 14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~-----------------~~~~~~a~~~f~~i~~AY~~L~d~~ 76 (109)
T 2qsa_A 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN-----------------KEEKLLAEERFRVIATAYETLKDDE 76 (109)
T ss_dssp TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS-----------------HHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----------------ccccHHHHHHHHHHHHHHHHHCCHH
Confidence 35999999999999 99999999999999999999752 2335678999999999999999999
Q ss_pred hhcccchhhh
Q 039706 1062 KRSRYDLEEE 1071 (1166)
Q Consensus 1062 kR~~YD~~~~ 1071 (1166)
+|+.||..+.
T Consensus 77 ~R~~YD~~~~ 86 (109)
T 2qsa_A 77 AKTNYDYYLD 86 (109)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999999764
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.31 E-value=2.8e-11 Score=117.02 Aligned_cols=103 Identities=29% Similarity=0.425 Sum_probs=98.5
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
.+..+..+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+.+|++++.++|+++.+++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC----cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 46677888999999999999999999999998 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 918 ATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 918 A~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
|.+|..+|++++|+..|++++++.|+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 999999999999999999999999984
No 147
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=1.8e-11 Score=138.04 Aligned_cols=253 Identities=13% Similarity=0.083 Sum_probs=180.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHh
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDF-LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQK 694 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~-~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~ 694 (1166)
.-++-+|+|..+|.... ++.|.. ....+.+.++|+.+|++... ..+. +.
T Consensus 21 kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~-~~----------------- 70 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTS-KL----------------- 70 (310)
T ss_dssp HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSS-TT-----------------
T ss_pred HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCC-HH-----------------
Confidence 45677899999998543 345544 45677888999999998742 1111 10
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCc
Q 039706 695 VSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQ 774 (1166)
Q Consensus 695 ~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~ 774 (1166)
..++..+..++ .++ |+..+++.+...+.....+..+|.++...|++++|+..|.+.+...|.. .
T Consensus 71 -~~a~~~la~~~----~~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-~------- 134 (310)
T 3mv2_B 71 -GKVLDLYVQFL----DTK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE-G------- 134 (310)
T ss_dssp -HHHHHHHHHHH----TTT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-T-------
T ss_pred -HHHHHHHHHHh----ccc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-C-------
Confidence 00111122222 122 7888999888766666777899999999999999999999998776521 0
Q ss_pred ccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC-
Q 039706 775 SMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG- 853 (1166)
Q Consensus 775 ~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G- 853 (1166)
.+..+.+++.+|..+|+.+.|.+.+++.....++. + .....+...+..+++.+..|
T Consensus 135 ---------------~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~-------~-~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 135 ---------------TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT-------V-SGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp ---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH-------H-HHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc-------c-ccchHHHHHHHHHHHHHHhCC
Confidence 01124568899999999999999998853322200 0 00122333343455566666
Q ss_pred -ChHHHHHHHHHHHhccccCCch--hHHHHHHHHHHHHHhhchhHHHHHHHHHHHh----------CCChHHHHHHHHHH
Q 039706 854 -RHSEAVEHYTAALSCTVESHPF--AAICFCNRAAAYKALRHITDAIADCNLAIAL----------DGNYLKAISRRATL 920 (1166)
Q Consensus 854 -~yeEAie~y~kALel~~e~~p~--~a~a~~nlA~ay~~lGq~eeAi~~lekALel----------dP~~~~A~~~LA~a 920 (1166)
++.+|+..|+++.+.. |. ....+++ +++++|++++|...++.++++ +|+++.++.+++.+
T Consensus 192 ~~~q~A~~~f~El~~~~----p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l 264 (310)
T 3mv2_B 192 ETATSNFYYYEELSQTF----PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL 264 (310)
T ss_dssp STTTHHHHHHHHHHTTS----CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC----CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence 9999999999987755 44 3445554 899999999999999988877 58899999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 921 YEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 921 y~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
...+|+ +|.++++++.++.|++.-
T Consensus 265 ~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 265 ALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHhCh--HHHHHHHHHHHhCCCChH
Confidence 999998 899999999999998854
No 148
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.31 E-value=3.8e-11 Score=119.27 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc
Q 039706 792 WRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE 871 (1166)
Q Consensus 792 wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e 871 (1166)
..+..+|.+++..|++++|+..|++++...+ .....+..+|.++...|+|++|+.+|++++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-- 77 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP--------------SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-- 77 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 3457799999999999999999999754332 235667788999999999999999999999988
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH--HHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR--RATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~--LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
|.+..+|+++|.++..+|++++|+..|++++.++|.+..++.. ++..+...|++++|+..++++..+.+.
T Consensus 78 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 78 --KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 7888999999999999999999999999999999999988855 455588899999999999998877654
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.31 E-value=1.8e-10 Score=127.77 Aligned_cols=172 Identities=13% Similarity=0.063 Sum_probs=134.3
Q ss_pred hcCCCHHHHHHHHHHHHHhCCChH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccc
Q 039706 709 KTSNDAEIALGVIDEALFISSYSE------KLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSE 782 (1166)
Q Consensus 709 ~~~gd~eeALe~lekALel~P~~~------~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~ 782 (1166)
...++|++|+..+.+++...+... .+++.+|.++...|++++|+..+++++.+.+.....
T Consensus 86 ~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------- 151 (293)
T 2qfc_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-------------- 151 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT--------------
T ss_pred HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch--------------
Confidence 358999999999999999887543 446678899999999999999999999887653221
Q ss_pred hhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch-HHHHHHhhhhHHHHHcCChHHHHHH
Q 039706 783 STKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV-RELLCRKSAGNEAFQAGRHSEAVEH 861 (1166)
Q Consensus 783 ~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~-~~a~~l~~lG~~~~~~G~yeEAie~ 861 (1166)
+..+..+..+|.+|..+|++++|+.+|++++.. ........ ..+..+.++|.+|...|+|++|+.+
T Consensus 152 -----~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~--------~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~ 218 (293)
T 2qfc_A 152 -----YQNLYIENAIANIYAENGYLKKGIDLFEQILKQ--------LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp -----THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH
Confidence 112234577999999999999999999997521 01111111 1236788999999999999999999
Q ss_pred HHHHHhcccc--CCchhHHHHHHHHHHHHHhhchhHH-HHHHHHHHHhC
Q 039706 862 YTAALSCTVE--SHPFAAICFCNRAAAYKALRHITDA-IADCNLAIALD 907 (1166)
Q Consensus 862 y~kALel~~e--~~p~~a~a~~nlA~ay~~lGq~eeA-i~~lekALeld 907 (1166)
|++++.+... .....+.+|+++|.+|..+|++++| ..+|++|+.+.
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999987631 2233588999999999999999999 78899998753
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.30 E-value=5.5e-12 Score=126.67 Aligned_cols=120 Identities=17% Similarity=0.044 Sum_probs=98.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHH
Q 039706 719 GVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIF 798 (1166)
Q Consensus 719 e~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA 798 (1166)
..|++++.++|.+..+++.+|.+++..|+|++|+..|++++.++|.+.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------- 55 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS-------------------------------- 55 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--------------------------------
Confidence 456778888888888888888888888888888888888888877542
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH
Q 039706 799 KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 799 ~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
..+..+|.++...|+|++|+.+|++++.++ |.++.
T Consensus 56 -----------------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~ 90 (148)
T 2vgx_A 56 -----------------------------------------RFFLGLGACRQAMGQYDLAIHSYSYGAVMD----IXEPR 90 (148)
T ss_dssp -----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTH
T ss_pred -----------------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCch
Confidence 123345777788888888888888898888 88888
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
+|+++|.+|..+|++++|+..|+++++++|+++....
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 9999999999999999999999999999888765543
No 151
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.28 E-value=1.2e-10 Score=115.62 Aligned_cols=135 Identities=11% Similarity=0.000 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
...|+.+|.+++..|++++|+..|++++.++|.+..+++.+|.++..+|++++|+.+|++++.++|.+...+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 85 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY------- 85 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH-------
Confidence 3567889999999999999999999999999999999999999999999999999999999999998543221
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHH--HHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMK--AEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~l--A~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
..+.+ +...|++++|+.+|++++.+.|.+..++..+ +..+..+|++++|+..+.++..+.+.
T Consensus 86 -------------~~a~~--~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 86 -------------RRAAS--NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp -------------HHHHH--HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHH--HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 11112 2347999999999999999999998888554 44588899999999999998876544
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.28 E-value=1.3e-11 Score=119.47 Aligned_cols=101 Identities=13% Similarity=-0.003 Sum_probs=91.7
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
.+..+|..++..|++++|+..|++++.++ |.++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35667999999999999999999999998 88999999999999999999999999999999999999999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 921 YEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 921 y~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
|..+|++++|+..|++++++.|...
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999988763
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.27 E-value=9.6e-12 Score=126.69 Aligned_cols=128 Identities=20% Similarity=0.163 Sum_probs=110.8
Q ss_pred HHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHH
Q 039706 801 YFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICF 880 (1166)
Q Consensus 801 y~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~ 880 (1166)
+...|++++|+..+++++...+ .....+..+|.+++..|++++|+.+|++++.++ |.+..++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p--------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~ 81 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP--------------QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR----GENAELY 81 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC--------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CSCHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCC--------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHH
Confidence 4567899999999999744333 335677888999999999999999999999998 7788999
Q ss_pred HHHHHH-HHHhhch--hHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 881 CNRAAA-YKALRHI--TDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 881 ~nlA~a-y~~lGq~--eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.++|.+ +...|++ ++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++++.|.+..
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 999999 8899999 99999999999999999999999999999999999999999999999888643
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.27 E-value=7.9e-11 Score=134.44 Aligned_cols=133 Identities=17% Similarity=0.120 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDF---------------LRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~---------------~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
...+|+++|.+|+.+|+|++|+..|++|+.++|.+ ..+|+++|.+|+.+|++++|+.+|++++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556779999999999999999999999999999 699999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHH
Q 039706 672 GSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEV 751 (1166)
Q Consensus 672 ~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeA 751 (1166)
+|++...+.. .+.+ +...|++++|+..|+++++++|.+..++..++.++..++++++|
T Consensus 226 ~p~~~~a~~~--------------------lg~~--~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSNNEKGLSR--------------------RGEA--HLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTTCHHHHHH--------------------HHHH--HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHH--------------------HHHH--HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9986433221 1222 23479999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHh
Q 039706 752 -IQLCEQTFHF 761 (1166)
Q Consensus 752 -i~~lekALel 761 (1166)
...|.+++..
T Consensus 284 ~~~~~~~~~~~ 294 (336)
T 1p5q_A 284 EKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 5577777654
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.27 E-value=1.4e-11 Score=121.83 Aligned_cols=129 Identities=12% Similarity=0.010 Sum_probs=98.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHH
Q 039706 719 GVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIF 798 (1166)
Q Consensus 719 e~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA 798 (1166)
..|++++.++|.+...++.+|.+++..|+|++|+..|++++.++|.+.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-------------------------------- 52 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA-------------------------------- 52 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--------------------------------
Confidence 356677778888888888888888888888888888888888777542
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH
Q 039706 799 KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI 878 (1166)
Q Consensus 799 ~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~ 878 (1166)
..+..+|.++...|+|++|+.+|++++.++ |.++.
T Consensus 53 -----------------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~ 87 (142)
T 2xcb_A 53 -----------------------------------------RYFLGLGACRQSLGLYEQALQSYSYGALMD----INEPR 87 (142)
T ss_dssp -----------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTH
T ss_pred -----------------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcH
Confidence 123345777788888888888888888888 78888
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
+|+++|.+|..+|++++|+..|+++++++|+++.....+..+...+
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999888776655544444433
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.26 E-value=6.8e-12 Score=149.49 Aligned_cols=166 Identities=12% Similarity=0.039 Sum_probs=135.8
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
.+++++|+..|+.++...|.....+..+|.+|+.+|+|++|+..|++++.+.|.+... .
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~----------~----------- 305 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL----------S----------- 305 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC----------C-----------
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC----------C-----------
Confidence 4667778888888888889999999999999999999999999999999999876431 0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
.+.... .....+..+.++|.+|+++++|++|+.+|++||.++
T Consensus 306 ----------------~~~~~~---------------------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 306 ----------------EKESKA---------------------SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp ----------------HHHHHH---------------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred ----------------hHHHHH---------------------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 000000 011234567788999999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH-HHHHH
Q 039706 871 ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD-FHRLI 938 (1166)
Q Consensus 871 e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~-yekAL 938 (1166)
|.+..+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..++++++|... |++++
T Consensus 348 ---p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 ---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999988754 44433
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.26 E-value=1.6e-11 Score=127.89 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=106.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc-h--
Q 039706 799 KSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP-F-- 875 (1166)
Q Consensus 799 ~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p-~-- 875 (1166)
.....+|++++|.+.+... .......+..+..+|..++..|+|++|+.+|++++.+.+.... .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 77 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYT--------------DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77 (198)
T ss_dssp ----------CCCSGGGCC--------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH
T ss_pred hhhhhhhhccccCchhhCC--------------HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh
Confidence 3445566777666665432 2334556778889999999999999999999999998732210 0
Q ss_pred ---------hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 876 ---------AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 876 ---------~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
...+|+++|.+|..+|++++|+.+|++++.++|.+..+++.+|.+|..+|++++|+..|++++++.|.+..
T Consensus 78 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 13899999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred hh
Q 039706 947 KS 948 (1166)
Q Consensus 947 ~~ 948 (1166)
..
T Consensus 158 ~~ 159 (198)
T 2fbn_A 158 IR 159 (198)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 158
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.25 E-value=5e-11 Score=121.75 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPD-------FLR-----VQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~-------~~~-----A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
....+.++|..++.+|+|++|+..|++||+++|+ +.. +|.++|.++..+|+|++|+.+|.++|+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~---- 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH---- 85 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence 3455788999999999999999999999999999 544 999999999999999999999988764
Q ss_pred chhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHH----HHHHHHHHHccCHHH
Q 039706 675 VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLL----EMKAEALFMLRKYEE 750 (1166)
Q Consensus 675 n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al----~~lA~~y~~lGdyee 750 (1166)
.|+++++++|++..+| +++|.+|..+|++++
T Consensus 86 ---------------------------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eE 120 (159)
T 2hr2_A 86 ---------------------------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAE 120 (159)
T ss_dssp ---------------------------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------------------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHH
Confidence 2566677889998999 999999999999999
Q ss_pred HHHHHHHHHHhccCCCCC
Q 039706 751 VIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 751 Ai~~lekALel~p~n~~a 768 (1166)
|+..|++++++.|.+...
T Consensus 121 Al~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 121 AMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHhcCCCcHHH
Confidence 999999999999987654
No 159
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.25 E-value=4.1e-12 Score=149.26 Aligned_cols=260 Identities=12% Similarity=0.051 Sum_probs=96.2
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHH
Q 039706 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVS 696 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~ 696 (1166)
.....|++++|++.++++ +.+.+|..+|.+++..|++++|++.|.++- +|. .......+..
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~--D~~---~y~~V~~~ae--------- 72 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--DPS---SYMEVVQAAN--------- 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCC--CHH---HHHHHHHHHH---------
Confidence 344678899999999998 334699999999999999999999998752 222 1111111111
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccc
Q 039706 697 ECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSM 776 (1166)
Q Consensus 697 e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l 776 (1166)
..|++++|+.+++.+++..+. +.+...++.+|.++|++.++.+.++. |+ ..+|...|..+
T Consensus 73 -------------~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~~ 132 (449)
T 1b89_A 73 -------------TSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDRC 132 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTTC-----C-------------
T ss_pred -------------hCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHHH
Confidence 245566666655555553222 44455555556666666655544431 21 11222222211
Q ss_pred ccCcc-chhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCCh
Q 039706 777 ELDSS-ESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRH 855 (1166)
Q Consensus 777 ~ld~~-~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~y 855 (1166)
.-.+. .-+...|..+..|..+|.++..+|++++|++.++++ .....|+..+.++...|+|
T Consensus 133 ~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA-------------------~~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 133 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-------------------NSTRTWKEVCFACVDGKEF 193 (449)
T ss_dssp ----CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH-------------------TCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc-------------------CCchhHHHHHHHHHHcCcH
Confidence 11000 011111111222456778888888888888888775 1245566667788888888
Q ss_pred HHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH--HhhCHHHHHHH
Q 039706 856 SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE--MIRDYDHAASD 933 (1166)
Q Consensus 856 eEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~--~lGdyeeAi~~ 933 (1166)
+.|..+... |.+. |.. ...+..+|.+.|++++|+.+++++|.+++.+..++..+|.+|. +.++..++++.
T Consensus 194 ~lA~~~~l~-L~~~----ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~ 265 (449)
T 1b89_A 194 RLAQMCGLH-IVVH----ADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 265 (449)
T ss_dssp HHHHHTTTT-TTTC----HHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhC----Hhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 888666654 2233 333 3346677888888888888888888888888888888888776 45677777777
Q ss_pred HHHHHHHhh
Q 039706 934 FHRLIALLT 942 (1166)
Q Consensus 934 yekALeL~P 942 (1166)
|...+.+.|
T Consensus 266 ~~~~ini~k 274 (449)
T 1b89_A 266 FWSRVNIPK 274 (449)
T ss_dssp HSTTSCHHH
T ss_pred HHHHhcCcH
Confidence 777776665
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.25 E-value=5e-11 Score=138.16 Aligned_cols=220 Identities=8% Similarity=-0.002 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFL-----------------RVQVRAANCHLALGEIEDASKYFRMCLQSG 672 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~-----------------~A~~~LA~lyl~lGd~eeAl~~fekALel~ 672 (1166)
+....|..+...|+|++|+..|.++++..|... .++..+|.+|..+|++++|..+|.+++.+.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999887642 468888999999999999999888877643
Q ss_pred CCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHH
Q 039706 673 SDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVI 752 (1166)
Q Consensus 673 P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi 752 (1166)
+.... .. ....++..++.++...|++++|+
T Consensus 86 ~~~~~--------------~~------------------------------------~~~~~~~~l~~~~~~~~~~~~a~ 115 (434)
T 4b4t_Q 86 MQFAK--------------SK------------------------------------TVKVLKTLIEKFEQVPDSLDDQI 115 (434)
T ss_dssp HTSCH--------------HH------------------------------------HHHHHHHHHHHHCSCCSCHHHHH
T ss_pred HHccc--------------hH------------------------------------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 22100 00 00123344566666778888888
Q ss_pred HHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhh
Q 039706 753 QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPL 832 (1166)
Q Consensus 753 ~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L 832 (1166)
.++++++.+.+..... +.+...+..+|.+|...|++++|+..+++++. .+...
T Consensus 116 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--------~~~~~ 168 (434)
T 4b4t_Q 116 FVCEKSIEFAKREKRV-------------------FLKHSLSIKLATLHYQKKQYKDSLALINDLLR--------EFKKL 168 (434)
T ss_dssp HHHHHHHHHHHHSSCC-------------------SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HHTTS
T ss_pred HHHHHHHHHHHHhCcc-------------------HHHHHHHHHHHHHHHHccChHHHHHHHHHHHH--------HHHhc
Confidence 8888888776543221 11122345688888889999999888888632 22223
Q ss_pred ccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC-C--chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 039706 833 AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES-H--PFAAICFCNRAAAYKALRHITDAIADCNLAIAL 906 (1166)
Q Consensus 833 ~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~-~--p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel 906 (1166)
......+..+..+|.+|...|+|.+|..+|++++.+.+.. . ...+.++..+|..+...++|.+|..+|.+++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445567788888999999999999999999998875321 1 234677888899999999999999999999875
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.25 E-value=8.3e-11 Score=121.03 Aligned_cols=171 Identities=12% Similarity=0.054 Sum_probs=130.1
Q ss_pred HHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Q 039706 742 LFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGN 821 (1166)
Q Consensus 742 y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~ 821 (1166)
++..|++++|+..++.+.. +|. ...+.+..+|.+|...|++++|+.++++++.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-- 54 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPA------------------------TASGARFMLGYVYAFMDRFDEARASFQALQQ-- 54 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STT------------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred ccccccHHHHHHHHHHhcC-ChH------------------------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--
Confidence 4567899999885544422 221 1123356799999999999999999999733
Q ss_pred CCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC--c-hhHHHHHHHHHHHHHhhchhHHHH
Q 039706 822 GGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH--P-FAAICFCNRAAAYKALRHITDAIA 898 (1166)
Q Consensus 822 ~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~--p-~~a~a~~nlA~ay~~lGq~eeAi~ 898 (1166)
.+.........+..+..+|.++...|++++|+.+|++++.+..... + ....+++++|.++..+|++++|+.
T Consensus 55 ------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (203)
T 3gw4_A 55 ------QAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ 128 (203)
T ss_dssp ------HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ------HHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 2222334456677888999999999999999999999999843211 2 567889999999999999999999
Q ss_pred HHHHHHHhCCC------hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 899 DCNLAIALDGN------YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 899 ~lekALeldP~------~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
++++++.+.+. ...++..+|.+|..+|++++|+..|++++++.....
T Consensus 129 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 129 EYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 99999987421 244678999999999999999999999999876543
No 162
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.25 E-value=9.3e-11 Score=122.28 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
...++++|.+++..|+|++|+..|++++ +| +..+++.+|.+|..+|++++|+.+|++++.++|.+...+.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------- 75 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF------- 75 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH-------
Confidence 3457899999999999999999999995 44 7899999999999999999999999999999998543221
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChH----------------HHHHHHHHHHHHccCHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSE----------------KLLEMKAEALFMLRKYEEV 751 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~----------------~al~~lA~~y~~lGdyeeA 751 (1166)
..+.+ +...|++++|+..|++++++.|.+. .++..+|.+|..+|++++|
T Consensus 76 -------------~lg~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 76 -------------QRGML--YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp -------------HHHHH--HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------HHHHH--HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 11222 2347999999999999999877655 9999999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 039706 752 IQLCEQTFHFAEKN 765 (1166)
Q Consensus 752 i~~lekALel~p~n 765 (1166)
+..+++++.+.|..
T Consensus 141 ~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 141 EEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcCccc
Confidence 99999999998854
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.2e-10 Score=135.02 Aligned_cols=208 Identities=12% Similarity=-0.001 Sum_probs=165.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCcccc
Q 039706 710 TSNDAEIALGVIDEALFISSYS-----------------EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDAN 772 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~-----------------~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~ 772 (1166)
..|+|++|+..|.+++...|.. ..++..+|.+|..+|+|++|++++.+++.+.+....+
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~---- 91 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS---- 91 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH----
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch----
Confidence 4799999999999999987753 2468899999999999999999999999887653221
Q ss_pred CcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHc
Q 039706 773 GQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQA 852 (1166)
Q Consensus 773 g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~ 852 (1166)
.........++.++...|++++|+.++++++. ...........+..+..+|.++...
T Consensus 92 ---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~~~~~~la~~~~~~ 148 (434)
T 4b4t_Q 92 ---------------KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE--------FAKREKRVFLKHSLSIKLATLHYQK 148 (434)
T ss_dssp ---------------HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH--------HHHHSSCCSSHHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------HHHHhCccHHHHHHHHHHHHHHHHc
Confidence 00111234577888889999999999998633 1222223334566778889999999
Q ss_pred CChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHH
Q 039706 853 GRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN-------YLKAISRRATLYEM 923 (1166)
Q Consensus 853 G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~-------~~~A~~~LA~ay~~ 923 (1166)
|+|.+|+.++++++.... ...+....++.+++.+|..+|++++|...+++++.+.+. ....+..+|.++..
T Consensus 149 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (434)
T 4b4t_Q 149 KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE 228 (434)
T ss_dssp TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 999999999999987642 345677889999999999999999999999999987422 24567788999999
Q ss_pred hhCHHHHHHHHHHHHHHhhhh
Q 039706 924 IRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 924 lGdyeeAi~~yekALeL~P~~ 944 (1166)
.++|.+|..+|.++++..+..
T Consensus 229 ~~~y~~A~~~~~~a~~~~~~~ 249 (434)
T 4b4t_Q 229 DKDYKTAFSYFFESFESYHNL 249 (434)
T ss_dssp SSCHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHhhhh
Confidence 999999999999999886654
No 164
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.6e-10 Score=110.98 Aligned_cols=116 Identities=11% Similarity=-0.008 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
+..|+++|..++..|+|++|+..|+++++++|++..+|+.+|.+|..+|++++|+.+|+++++++|++...+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----- 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK----- 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH-----
Confidence 456788999999999999999999999999999999999999999999999999999999999999864332211
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC------CChHHHHHHHHHHHHHc
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS------SYSEKLLEMKAEALFML 745 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~------P~~~~al~~lA~~y~~l 745 (1166)
+.+ +...|++++|+..|+++++++ |.+..++..++.+...+
T Consensus 79 ---------------g~~--~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 79 ---------------ATA--QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp ---------------HHH--HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred ---------------HHH--HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 111 224799999999999999999 88988888888876553
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.24 E-value=8e-11 Score=114.86 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.++.++|.+++..|+|++|+..|++||+++|+++.+|..+|.+|..+|++++|+.+|+++++++|++...+..+..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~-- 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM-- 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH--
Confidence 457889999999999999999999999999999999999999999999999999999999999887654443333322
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS 731 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~ 731 (1166)
...+.++ ...+++++|+.+|+++|...|+.
T Consensus 87 -----------~~lg~~~--~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 87 -----------SRAGNAF--QKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp -----------HHHHHHH--HHTTCHHHHHHHHHHHHHHSCCH
T ss_pred -----------HHHHHHH--HHcCCHHHHHHHHHHHHhhCcCH
Confidence 2222222 34899999999999999998863
No 166
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.1e-12 Score=117.80 Aligned_cols=61 Identities=31% Similarity=0.456 Sum_probs=56.0
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||.+.++.++||++||+++++|||||++. ..++++|++|++||++|+||.+|
T Consensus 27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~---------------------~~~~~~f~~i~~Ay~~L~d~~~R 85 (90)
T 2ys8_A 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA---------------------PGSEDAFKAVVNARTALLKNIKS 85 (90)
T ss_dssp SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC---------------------TTHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHHCCcccc
Confidence 599999999999999999999999999999999852 35778899999999999999988
Q ss_pred cc
Q 039706 1064 SR 1065 (1166)
Q Consensus 1064 ~~ 1065 (1166)
+.
T Consensus 86 ~~ 87 (90)
T 2ys8_A 86 GP 87 (90)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 167
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.23 E-value=3.9e-10 Score=116.01 Aligned_cols=172 Identities=12% Similarity=0.021 Sum_probs=132.1
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhh
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSF 789 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~ 789 (1166)
..|++++|+..++.+....+....++..+|.++..+|++++|+.++++++.+....... ..
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------~~ 64 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH-------------------TA 64 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH-------------------HH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc-------------------HH
Confidence 36899999996655544333678899999999999999999999999999986643211 11
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch-HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhc
Q 039706 790 RLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV-RELLCRKSAGNEAFQAGRHSEAVEHYTAALSC 868 (1166)
Q Consensus 790 ~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~-~~a~~l~~lG~~~~~~G~yeEAie~y~kALel 868 (1166)
....+..+|.+|...|++++|+.++++++.. ........ ..+..+..+|.++...|++++|+.+|++++.+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEEREL--------LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2344677999999999999999999997431 11122122 45677888999999999999999999999987
Q ss_pred ccc--CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC
Q 039706 869 TVE--SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG 908 (1166)
Q Consensus 869 ~~e--~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP 908 (1166)
... .....+.++.++|.++..+|++++|+..+++++++..
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 532 2223456789999999999999999999999998753
No 168
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.23 E-value=3.6e-12 Score=132.37 Aligned_cols=74 Identities=22% Similarity=0.361 Sum_probs=64.0
Q ss_pred ccchhhhcccCCCCC--HHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCC
Q 039706 983 PLDMYLILGVESSVS--VADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDP 1060 (1166)
Q Consensus 983 ~~dyY~iLGl~~~as--~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~ 1060 (1166)
..+||.+|||++.++ ..+|+++||+++++|||||++.. ....+..|...|+.|++||++|+||
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~---------------~~~e~~~a~~~f~~In~AY~vL~dp 67 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATA---------------SERDRLMAVQQAAQINDAYQTLKDP 67 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTS---------------CHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---------------cHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 469999999999887 99999999999999999998632 2334556889999999999999999
Q ss_pred chhcccchhhh
Q 039706 1061 SKRSRYDLEEE 1071 (1166)
Q Consensus 1061 ~kR~~YD~~~~ 1071 (1166)
.+|..||..+.
T Consensus 68 ~~R~~Yd~~l~ 78 (174)
T 3hho_A 68 LRRAEYLLSLQ 78 (174)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcc
Confidence 99999998664
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.23 E-value=8.7e-12 Score=148.57 Aligned_cols=114 Identities=24% Similarity=0.378 Sum_probs=99.0
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC-----------CchhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES-----------HPFAAICFCNRAAAYKALRHITDAIADCNLA 903 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~-----------~p~~a~a~~nlA~ay~~lGq~eeAi~~lekA 903 (1166)
.+..+..++.+|+.++..|+|++|+.+|++||.+++.. .+....+|+++|.||.++|+|++|+.+|++|
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45567788899999999999999999999999988322 1122789999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 904 IALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 904 LeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
|+++|+++.+|+++|.+|..+|+|++|+.+|++++++.|.+...+
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~ 388 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHH
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999999999999876544
No 170
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.23 E-value=3.9e-12 Score=131.74 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=63.8
Q ss_pred chhhhcccCCCC--CHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 985 DMYLILGVESSV--SVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 985 dyY~iLGl~~~a--s~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
+||.+|||++.+ +..+|+++||+++++|||||++.. +...+..|...|+.|++||+||+||.+
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~---------------~~~e~~~a~~~f~~In~AY~vL~dp~~ 66 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASG---------------SQAEQLAAVQQSATINQAWQTLRHPLM 66 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTS---------------CHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCC---------------CHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 799999999999 999999999999999999998631 234456788999999999999999999
Q ss_pred hcccchhhh
Q 039706 1063 RSRYDLEEE 1071 (1166)
Q Consensus 1063 R~~YD~~~~ 1071 (1166)
|..||..+.
T Consensus 67 R~~Yd~~l~ 75 (171)
T 1fpo_A 67 RAEYLLSLH 75 (171)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999998653
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.22 E-value=2.2e-10 Score=111.76 Aligned_cols=145 Identities=16% Similarity=0.125 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
.+.+..+|.+|+..|++++|+.++++++.. ..........+..+..+|.++...|++++|+.+|++++.+.+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLI--------AKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------HHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344677999999999999999999997431 111222334456788899999999999999999999998763
Q ss_pred c--CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 871 E--SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG------NYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 871 e--~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP------~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
. ..+....++.++|.++..+|++++|+.++++++.+.+ ....++..+|.+|..+|++++|+..+++++++..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 2 2233477899999999999999999999999998742 3367889999999999999999999999998865
Q ss_pred h
Q 039706 943 K 943 (1166)
Q Consensus 943 ~ 943 (1166)
+
T Consensus 161 ~ 161 (164)
T 3ro3_A 161 E 161 (164)
T ss_dssp T
T ss_pred H
Confidence 4
No 172
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=3.6e-10 Score=119.95 Aligned_cols=174 Identities=11% Similarity=-0.031 Sum_probs=140.1
Q ss_pred hHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHH
Q 039706 595 ASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALG----EIEDASKYFRMCLQ 670 (1166)
Q Consensus 595 A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lG----d~eeAl~~fekALe 670 (1166)
+...+..|.+.-.+.+++++|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+++++
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 4456777778888899999999999999999999999999875 689999999999998 7 99999999999976
Q ss_pred cCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH--hhcCCCHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHH--
Q 039706 671 SGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQ--NKTSNDAEIALGVIDEALFISS--YSEKLLEMKAEALFM-- 744 (1166)
Q Consensus 671 l~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~--~~~~gd~eeALe~lekALel~P--~~~~al~~lA~~y~~-- 744 (1166)
.. +... +..+..++. ....+++++|+.+|+++++..+ ..+.+++.+|.+|..
T Consensus 82 ~g--~~~a--------------------~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~ 139 (212)
T 3rjv_A 82 AG--SKSG--------------------EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGV 139 (212)
T ss_dssp TT--CHHH--------------------HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTS
T ss_pred CC--CHHH--------------------HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCC
Confidence 43 2221 122222221 1126899999999999999988 458999999999999
Q ss_pred --ccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHc-C-----CHHHHHHHHHH
Q 039706 745 --LRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTL-G-----RLEEAIAALER 816 (1166)
Q Consensus 745 --lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~l-G-----d~eeAl~~lek 816 (1166)
.+++++|+.+|++++++ +.+.. .+..||.+|... | ++++|+.+|++
T Consensus 140 g~~~d~~~A~~~~~~A~~~-~~~~~-------------------------a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~ 193 (212)
T 3rjv_A 140 HGPEDDVKASEYFKGSSSL-SRTGY-------------------------AEYWAGMMFQQGEKGFIEPNKQKALHWLNV 193 (212)
T ss_dssp SSSCCHHHHHHHHHHHHHT-SCTTH-------------------------HHHHHHHHHHHCBTTTBCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc-CCCHH-------------------------HHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence 89999999999999987 33221 146688888764 3 89999999999
Q ss_pred Hhc
Q 039706 817 HES 819 (1166)
Q Consensus 817 Al~ 819 (1166)
+..
T Consensus 194 A~~ 196 (212)
T 3rjv_A 194 SCL 196 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 173
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.21 E-value=5.6e-10 Score=128.10 Aligned_cols=160 Identities=9% Similarity=-0.057 Sum_probs=131.1
Q ss_pred hHHHHHHHHHhchH--HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHH
Q 039706 595 ASAETIAAQEACEK--WRLSNRAATRMALG-RMRDALSDCMLAVAIDPDFLRVQVRAANCHLAL-G-EIEDASKYFRMCL 669 (1166)
Q Consensus 595 A~a~~~aAIe~~e~--~ay~nrA~ayl~lG-~y~eAI~~fekALeldP~~~~A~~~LA~lyl~l-G-d~eeAl~~fekAL 669 (1166)
+...+..+|...|. .+|+.|+.++..++ .+++|+..+.++|..+|++..+|..++.++..+ + ++++++..+.+++
T Consensus 73 AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 73 ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 55555666665554 56788999999999 599999999999999999999999999999998 8 9999999999999
Q ss_pred HcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccC--
Q 039706 670 QSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRK-- 747 (1166)
Q Consensus 670 el~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGd-- 747 (1166)
+.+|.+..++....-+...+...... ....+.+++++++++++.+|.+..+|..++.++..+++
T Consensus 153 ~~dpkNy~AW~~R~wvl~~l~~~~~~--------------~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 153 LPDPKNYHTWAYLHWLYSHFSTLGRI--------------SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHTTCC--------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC
T ss_pred HhCCCCHHHHHHHHHHHHHhcccccc--------------chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 99999877665443333333221100 01224689999999999999999999999999999987
Q ss_pred -----HHHHHHHHHHHHHhccCCCCC
Q 039706 748 -----YEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 748 -----yeeAi~~lekALel~p~n~~a 768 (1166)
++++++++.+++.++|.+..+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P~n~Sa 244 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIPHNVSA 244 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 799999999999999987554
No 174
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.21 E-value=5.3e-12 Score=134.65 Aligned_cols=68 Identities=37% Similarity=0.599 Sum_probs=62.3
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||+++++.++||++||+++++|||||++.. ..+.++|+.|++||++|+||.+|
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~--------------------~~~~~~f~~i~~Ay~~L~~~~~r 61 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--------------------PNAHGDFLKINRAYEVLKDEDLR 61 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC--------------------TTHHHHHHHHHHHHHHHTSHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------hHHHHHHHHHHHHHHHhCCHHHH
Confidence 3899999999999999999999999999999998531 36889999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||..+.
T Consensus 62 ~~yd~~~~ 69 (210)
T 3apq_A 62 KKYDKYGE 69 (210)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhcc
Confidence 99999765
No 175
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.20 E-value=1.6e-12 Score=125.41 Aligned_cols=63 Identities=27% Similarity=0.366 Sum_probs=57.4
Q ss_pred cchhhhcccCCCCCH--HHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESSVSV--ADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~--~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.++|.+|||.+.++. .+||++||++++++||||.+. +++|++|++||+||+||.
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~------------------------~e~f~~I~~AYevL~d~~ 63 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------------------------EEKMKKMNTLYKKMEDGV 63 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------------------------TTTTHHHHHHHHHHHHHH
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc------------------------HHHHHHHHHHHHHHCCHH
Confidence 489999999999998 999999999999999999751 257999999999999999
Q ss_pred hhcccchhh
Q 039706 1062 KRSRYDLEE 1070 (1166)
Q Consensus 1062 kR~~YD~~~ 1070 (1166)
+|++||.++
T Consensus 64 ~R~~~~~~~ 72 (114)
T 1gh6_A 64 KYAHQPDFG 72 (114)
T ss_dssp HSCCSSCCS
T ss_pred HHHHhhhcc
Confidence 999999754
No 176
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.20 E-value=1.1e-11 Score=129.33 Aligned_cols=167 Identities=11% Similarity=0.036 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
.++++.|.+.++......+.....+..+|.+++..|+|++|+..|++++.+.|.++...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------------------- 75 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--------------------- 75 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC---------------------
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc---------------------
Confidence 45566666666555555555666777777777777777777777777777766543210
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV 870 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~ 870 (1166)
.+ .+..... .-....+.++|.+++..|+|++|+.+|++++.++
T Consensus 76 ------~~-----------~~~~~~~-------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 76 ------DQ-----------ILLDKKK-------------------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp ------CH-----------HHHHHHH-------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred ------hh-----------hHHHHHH-------------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 00 0000000 0124567788999999999999999999999998
Q ss_pred cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHH-HHHHHHH
Q 039706 871 ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAA-SDFHRLI 938 (1166)
Q Consensus 871 e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi-~~yekAL 938 (1166)
|.+..+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..++++.++. ..|.+++
T Consensus 119 ---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 ---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp ---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred ---cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999999999999999999988887 4455544
No 177
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.20 E-value=6.1e-11 Score=120.72 Aligned_cols=130 Identities=15% Similarity=0.120 Sum_probs=108.0
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHH
Q 039706 617 TRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVS 696 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~ 696 (1166)
.+...|++++|+..|++++..+|.+..+|+.+|.+|...|++++|+.+|+++++++|.+...+..
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------------- 83 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA--------------- 83 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHH---------------
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH---------------
Confidence 35677899999999999999999999999999999999999999999999999999986432211
Q ss_pred HHHHHHHHHHHhhcCCCH--HHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 697 ECMQRSAQLLQNKTSNDA--EIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 697 e~~~~a~~~l~~~~~gd~--eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
.+.++ +...+++ ++|+.+|++++.++|.+..++..+|.+|..+|++++|+..|++++.+.|.+..
T Consensus 84 -----la~~l-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 84 -----LATVL-YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp -----HHHHH-HHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred -----HHHHH-HHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 11110 1236888 99999999999999999999999999999999999999999999999997643
No 178
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.20 E-value=6.5e-12 Score=133.78 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=63.5
Q ss_pred ccchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCC
Q 039706 983 PLDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDP 1060 (1166)
Q Consensus 983 ~~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~ 1060 (1166)
..+||.+|||++. ++..+|+++||+++++|||||++.. .+..+..|.++|++|++||+||+||
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~---------------~~~e~~~a~~~f~~In~AY~vLsdp 106 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQR---------------SQTEKDFSEKHSTLVNDAYKTLLAP 106 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTS---------------CHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---------------CHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 3689999999986 7899999999999999999998631 2344567889999999999999999
Q ss_pred chhcccchhh
Q 039706 1061 SKRSRYDLEE 1070 (1166)
Q Consensus 1061 ~kR~~YD~~~ 1070 (1166)
.+|+.||..+
T Consensus 107 ~~R~~Yd~~l 116 (207)
T 3bvo_A 107 LSRGLYLLKL 116 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999854
No 179
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.19 E-value=4.2e-10 Score=106.11 Aligned_cols=120 Identities=17% Similarity=0.074 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
....++.+|.+++..|++++|+..|++++.++|.+..++..+|.++..+|++++|+.+|++++.+.|.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG------ 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH------
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH------
Confidence 44667889999999999999999999999999999999999999999999999999999999999998533221
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCH
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKY 748 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdy 748 (1166)
..+.+ +...|++++|+.+|++++.+.|.+..++..++.++..+|++
T Consensus 85 --------------~~~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 --------------RMGLA--LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp --------------HHHHH--HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred --------------HHHHH--HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 11111 23479999999999999999999999999999999998875
No 180
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-10 Score=111.10 Aligned_cols=109 Identities=32% Similarity=0.504 Sum_probs=101.9
Q ss_pred chHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 835 TVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 835 ~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
.+.....+..+|..++..|+|++|+.+|++++.+. |.+..+++++|.+|..+|++++|+.+|++++.++|.+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 87 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY 87 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHH
Confidence 44567788889999999999999999999999987 77899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHh
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~ 947 (1166)
+.+|.+|..+|++++|+..|++++++.|.+...
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 120 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHH
Confidence 999999999999999999999999998887554
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=3.9e-11 Score=147.01 Aligned_cols=208 Identities=10% Similarity=0.024 Sum_probs=153.8
Q ss_pred HHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 617 TRMALGRM-RDALSDCMLAVAIDPDFLRVQVRAANCHLALGE----------IEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 617 ayl~lG~y-~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd----------~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
.+...|.+ ++|+..+.++|.++|++..+|..++.++..+++ +++|+..+.++++.+|.+..+|...
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR--- 113 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR--- 113 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH---
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH---
Confidence 34555655 677999999999999999999999999999988 8888888888888888865443221
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhc
Q 039706 686 SDGLQKAQKVSECMQRSAQLLQNKTSN--DAEIALGVIDEALFISSYSEKLLEMKAEALFMLR-KYEEVIQLCEQTFHFA 762 (1166)
Q Consensus 686 ~~~L~k~~~~~e~~~~a~~~l~~~~~g--d~eeALe~lekALel~P~~~~al~~lA~~y~~lG-dyeeAi~~lekALel~ 762 (1166)
.-++. ..+ +|++|++.++++++++|.+..+|..++.++..++ .++++++++.++++.+
T Consensus 114 -----------------~w~l~--~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 114 -----------------CWLLS--RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp -----------------HHHHH--TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred -----------------HHHHH--HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 11222 234 6788888888888888888888888888888888 8888888888888887
Q ss_pred cCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHH
Q 039706 763 EKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCR 842 (1166)
Q Consensus 763 p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l 842 (1166)
|.+..+ |..++.++..+....+| ...
T Consensus 175 p~n~sa-------------------------W~~r~~ll~~l~~~~~~-----------~~~------------------ 200 (567)
T 1dce_A 175 FSNYSS-------------------------WHYRSCLLPQLHPQPDS-----------GPQ------------------ 200 (567)
T ss_dssp CCCHHH-------------------------HHHHHHHHHHHSCCCCS-----------SSC------------------
T ss_pred CCCccH-------------------------HHHHHHHHHhhcccccc-----------ccc------------------
Confidence 766433 23344444433221000 000
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH------------HHHHHHHHHHhCCC
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD------------AIADCNLAIALDGN 909 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee------------Ai~~lekALeldP~ 909 (1166)
+ ....+.+++|++++.+||.++ |.+..+|++++.++...+++++ |+..|++++.++|.
T Consensus 201 ---~--~~~~~~~~eel~~~~~ai~~~----P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 201 ---G--RLPENVLLKELELVQNAFFTD----PNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp ---C--SSCHHHHHHHHHHHHHHHHHC----SSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred ---c--cccHHHHHHHHHHHHHHHhhC----CCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 0 001245899999999999998 8899999999999999998777 77778888888875
No 182
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.18 E-value=1.7e-10 Score=107.01 Aligned_cols=106 Identities=22% Similarity=0.346 Sum_probs=99.1
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA 918 (1166)
+..+..+|..++..|++++|+.+|++++... |.+..++.++|.++..+|++++|+..+++++.++|.++.++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4567778999999999999999999999988 778899999999999999999999999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
.+|..+|++++|+..|++++++.|.+...+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999988775543
No 183
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.17 E-value=2.8e-10 Score=107.38 Aligned_cols=116 Identities=15% Similarity=0.061 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
+..+|.+++..|++++|+..+++++...+ .....+..+|.++...|++++|+.+|.+++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---- 76 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNP--------------ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---- 76 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC--------------CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC----
Confidence 44566667777777777777766533222 223445556666777777777777777777665
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCH
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDY 927 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdy 927 (1166)
|.+..+++.+|.++..+|++++|+..+++++.++|.+..++..+|.++..+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 555666677777777777777777777777777776667777777777666654
No 184
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.16 E-value=2.1e-10 Score=109.24 Aligned_cols=117 Identities=14% Similarity=0.057 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc
Q 039706 792 WRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE 871 (1166)
Q Consensus 792 wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e 871 (1166)
..+..+|.+++..|++++|+..|++++...+. ....+..+|.++...|++++|+.+|++++.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 80 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--------------DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-- 80 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--
Confidence 34577999999999999999999998554432 35667888999999999999999999999988
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
|.+..+++++|.+|..+|++++|+..|++++.++|.+..++..++.++..+|+
T Consensus 81 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 --PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred --CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999999999999999999999999998764
No 185
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.16 E-value=8.6e-11 Score=130.53 Aligned_cols=170 Identities=15% Similarity=0.058 Sum_probs=123.7
Q ss_pred CChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHH
Q 039706 729 SYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLE 808 (1166)
Q Consensus 729 P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~e 808 (1166)
|..+..+..+|.+++..|+|++|+..|++++.+.|.+.. .+..+|.+|..+|+++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------------------~~~~la~~~~~~~~~~ 55 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV-------------------------YYTNRALCYLKMQQPE 55 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-------------------------HHHHHHHHHHHTTCHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH-------------------------HHHHHHHHHHHhcCHH
Confidence 456778888999999999999999999999998876432 2467889999999999
Q ss_pred HHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHH
Q 039706 809 EAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYK 888 (1166)
Q Consensus 809 eAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~ 888 (1166)
+|+..+++++...+ .....+..+|.++...|++++|+..|++++.+++ .+...+........
T Consensus 56 ~A~~~~~~al~~~p--------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p----~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 56 QALADCRRALELDG--------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK----EQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHHHHHTTSCT--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HTTCCCCSHHHHHH
T ss_pred HHHHHHHHHHHhCC--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----cchhhHHHHHHHHH
Confidence 99999998855443 3355677889999999999999999999999884 33222111111111
Q ss_pred HhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 889 ALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 889 ~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+..++...........|....+...++.++ .|++++|+..|++++++.|.+..
T Consensus 118 ---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~ 170 (281)
T 2c2l_A 118 ---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGH 170 (281)
T ss_dssp ---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHH
T ss_pred ---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhh
Confidence 122222333333345677777777777765 79999999999999999887654
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.16 E-value=2e-10 Score=115.58 Aligned_cols=128 Identities=15% Similarity=0.027 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcC--------CCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHH
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESG--------NGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTA 864 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~--------~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~k 864 (1166)
.+..+|..++..|++++|+..|++++.. .+.... .....+..+..+.++|.+++..|+|++|+.+|++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE----WVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH----HHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH----HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3567999999999999999999998542 111000 0011445677889999999999999999999999
Q ss_pred HHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChH-HHHHHHHHHHHHhhCHH
Q 039706 865 ALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYL-KAISRRATLYEMIRDYD 928 (1166)
Q Consensus 865 ALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~-~A~~~LA~ay~~lGdye 928 (1166)
+|.++ |.++.+|+.+|.+|..+|++++|+.+|++++.++|++. .+...++.+...++++.
T Consensus 89 al~~~----p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 89 VLKRE----ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcC----CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998 88999999999999999999999999999999999998 66777777776655443
No 187
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-10 Score=112.16 Aligned_cols=109 Identities=29% Similarity=0.344 Sum_probs=100.8
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchh---HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFA---AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLK 912 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~---a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~ 912 (1166)
...+..+..+|..++..|+|++|+.+|++++.+. |.. ..+|+++|.+|..+|++++|+.+|++++.++|.++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence 4457778889999999999999999999999987 555 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+++.+|.+|..+|++++|+..|++++++.|++.+.+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 999999999999999999999999999988876543
No 188
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.16 E-value=8.5e-12 Score=115.42 Aligned_cols=59 Identities=25% Similarity=0.380 Sum_probs=51.2
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCC
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSD 1059 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd 1059 (1166)
.++|.+|||.+.++..+||+|||++|++|||||++.. +..+.|+.+|++|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~-----------------~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQ-----------------PYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTS-----------------TTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----------------hhHhHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999998631 1124689999999999999964
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.16 E-value=2.5e-10 Score=132.39 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=99.5
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc------------CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE------------SHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e------------~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALe 905 (1166)
.+..+..+|..++..|+|++|+.+|++||.+.+. ..|....+|+++|.+|..+|+|++|+.+|++||+
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3455777899999999999999999999983211 2378899999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 906 LDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 906 ldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
++|+++.+|+.+|.+|..+|++++|+.+|++|+++.|.+....
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~ 344 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ 344 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999999999999876543
No 190
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.15 E-value=2.2e-10 Score=110.87 Aligned_cols=99 Identities=5% Similarity=-0.126 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
++.+|.+++..|++++|+..|+++++++|++..+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---------------- 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---------------- 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------
Confidence 4678999999999999999999999999999999999999999999999999998887776665
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
++.++..+|.+|..+|++++|+..|+++++++|.+
T Consensus 84 ----------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 84 ----------------------------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ----------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 44556677777777777777777777777777654
No 191
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.15 E-value=2.1e-10 Score=115.69 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
.+..+|.+|+..|++++|+.+|++++...+ .....+..+|.+++..|+|++|+.+|++++.++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--- 75 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAP--------------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--- 75 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---
Confidence 356799999999999999999999854333 346678889999999999999999999999998
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
|.+..+|+++|.+|..+|++++|+.+|+++++++|++..+|+.++....
T Consensus 76 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 76 -PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999998877776543
No 192
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.15 E-value=1.1e-11 Score=111.92 Aligned_cols=61 Identities=18% Similarity=0.376 Sum_probs=54.9
Q ss_pred cchhhhcccCCC--CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESS--VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~--as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.++|.+|||++. ++..+||++||+++++||||+.+ ..++|++|++||++|+|+.
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~------------------------~~~~f~~i~~AYe~L~~~~ 66 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG------------------------SHALMQELNSLWGTFKTEV 66 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC------------------------CHHHHHHHHHHHHHHhhHH
Confidence 379999999999 99999999999999999999964 1367999999999999999
Q ss_pred hhcccch
Q 039706 1062 KRSRYDL 1068 (1166)
Q Consensus 1062 kR~~YD~ 1068 (1166)
+|..++.
T Consensus 67 ~r~~~~~ 73 (79)
T 1faf_A 67 YNLRMNL 73 (79)
T ss_dssp HHHTTCC
T ss_pred HHHHHhc
Confidence 9988654
No 193
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.14 E-value=7.7e-12 Score=128.80 Aligned_cols=64 Identities=27% Similarity=0.389 Sum_probs=55.8
Q ss_pred cchhhhcccCCCCC--HHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESSVS--VADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~as--~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.++|++|||++.++ .++||+|||++|+++||||++. +++|++|++||++|+||.
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~------------------------~e~F~~I~~AYevLsdp~ 66 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------------------------EEKMKKMNTLYKKMEDGV 66 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C------------------------CTTTTHHHHHHHHHHHHH
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC------------------------HHHHHHHHHHHHHhCCHH
Confidence 48999999999998 6999999999999999999752 247999999999999999
Q ss_pred hhcccchhhh
Q 039706 1062 KRSRYDLEEE 1071 (1166)
Q Consensus 1062 kR~~YD~~~~ 1071 (1166)
+|+.||.++.
T Consensus 67 kR~~YD~~G~ 76 (174)
T 2pf4_E 67 KYAHQPDFGG 76 (174)
T ss_dssp HHHTSCGGGG
T ss_pred HHHHHhccCC
Confidence 9999999764
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.14 E-value=9.1e-10 Score=107.33 Aligned_cols=151 Identities=14% Similarity=0.094 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHH
Q 039706 732 EKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAI 811 (1166)
Q Consensus 732 ~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl 811 (1166)
..++..+|.++...|++++|+.++++++.+.+..... ......+..+|.+|...|++++|+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~g~~~~A~ 69 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK-------------------AAERIAYSNLGNAYIFLGEFETAS 69 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc-------------------hHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4678899999999999999999999999987653211 122334577999999999999999
Q ss_pred HHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc--cCCchhHHHHHHHHHHHHH
Q 039706 812 AALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV--ESHPFAAICFCNRAAAYKA 889 (1166)
Q Consensus 812 ~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~--e~~p~~a~a~~nlA~ay~~ 889 (1166)
.++++++.. ..........+..+..+|.++...|++++|+.+|++++.+.. ...+..+.++.++|.+|..
T Consensus 70 ~~~~~a~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 70 EYYKKTLLL--------ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp HHHHHHHHH--------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------HHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 999997431 111222334466788899999999999999999999998753 2234557789999999999
Q ss_pred hhchhHHHHHHHHHHHhCCC
Q 039706 890 LRHITDAIADCNLAIALDGN 909 (1166)
Q Consensus 890 lGq~eeAi~~lekALeldP~ 909 (1166)
+|++++|+.++++++++...
T Consensus 142 ~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HTCHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999987543
No 195
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.14 E-value=4.9e-10 Score=107.07 Aligned_cols=104 Identities=10% Similarity=0.026 Sum_probs=94.0
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHHHH
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISRRA 918 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~LA 918 (1166)
++.+|..++..|+|++|+..|++++...+.. +....+++.+|.+|..+|++++|+..|++++.++|++ +.+++.+|
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNG-VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 4567999999999999999999999987322 3334799999999999999999999999999999999 89999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 919 TLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 919 ~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.+|..+|++++|+..|+++++..|+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence 9999999999999999999999988754
No 196
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.13 E-value=2e-11 Score=112.49 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=55.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.++|.+|||..+++.++||++||+++++||||+++.. .+.|+++|++|++||++|+|...|
T Consensus 16 ~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~-------------------~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-------------------HDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC-------------------HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-------------------hHHHHHHHHHHHHHHHHHHhhccc
Confidence 4899999999999999999999999999999997631 246889999999999999998777
Q ss_pred cc
Q 039706 1064 SR 1065 (1166)
Q Consensus 1064 ~~ 1065 (1166)
..
T Consensus 77 ~~ 78 (88)
T 1iur_A 77 DQ 78 (88)
T ss_dssp SS
T ss_pred cc
Confidence 33
No 197
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.13 E-value=1.3e-11 Score=127.83 Aligned_cols=66 Identities=26% Similarity=0.432 Sum_probs=58.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.++|.+|||.+.++..+||++||+++++|||||++.. .....|+++|++|++||++|+||.+|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~-----------------~~e~~A~~~F~~I~eAYevLsD~~kR 179 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ-----------------PYEQYAKMIFMELNDAWSEFENQGQK 179 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSC-----------------TTHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCc-----------------chHHHHHHHHHHHHHHHHHHCCHHhh
Confidence 4899999999999999999999999999999998631 11135889999999999999999999
Q ss_pred ccc
Q 039706 1064 SRY 1066 (1166)
Q Consensus 1064 ~~Y 1066 (1166)
+.|
T Consensus 180 ~~Y 182 (182)
T 1n4c_A 180 PLY 182 (182)
T ss_dssp CCC
T ss_pred hhC
Confidence 988
No 198
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.13 E-value=1.6e-08 Score=126.14 Aligned_cols=198 Identities=9% Similarity=-0.063 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHH
Q 039706 717 ALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVI-QLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCC 795 (1166)
Q Consensus 717 ALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi-~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~ 795 (1166)
....|+++|...|..+.+|+..|..+...|+.++|+ ..|++++...|... ..+.
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~-------------------------~Lwl 382 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA-------------------------VLAF 382 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH-------------------------HHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH-------------------------HHHH
Confidence 457799999999999999999999999999999997 99999998877531 1134
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCch--hhhhhh-----hc-cchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 796 LIFKSYFTLGRLEEAIAALERHESGNGGKM--LESLIP-----LA-GTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 796 lLA~ay~~lGd~eeAl~~lekAl~~~~~k~--le~a~~-----L~-~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
.++..+...|++++|...|++++..-+... +....+ +. ........|...+....+.+..+.|...|.+|++
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 577888899999999999999753210000 000000 00 0001234566667778888999999999999998
Q ss_pred ccccCCchhHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhh
Q 039706 868 CTVESHPFAAICFCNRAAAYKALRH-ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLT 942 (1166)
Q Consensus 868 l~~e~~p~~a~a~~nlA~ay~~lGq-~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P 942 (1166)
..+ +....+|...|.+....+. ++.|...|+++|+..|+.+..|...+......|+.+.|...|++|+...|
T Consensus 463 ~~~---~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 463 LKK---LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp TGG---GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred hcC---CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 621 3345667666776666654 89999999999999999999999999999999999999999999998876
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.12 E-value=3.1e-11 Score=137.99 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHH
Q 039706 731 SEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEA 810 (1166)
Q Consensus 731 ~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeA 810 (1166)
....+..+|.+++..|+|++|+..|++++.+.|.+. .+...+++.++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~---------------------------------~~~~~~~~~~~ 224 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF---------------------------------MFQLYGKYQDM 224 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH---------------------------------HHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch---------------------------------hhhhcccHHHH
Confidence 345678899999999999999999999998876421 11123333444
Q ss_pred HHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHh
Q 039706 811 IAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKAL 890 (1166)
Q Consensus 811 l~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~l 890 (1166)
...+. ...+.++|.+|+..++|++|+.+|+++|.++ |.+..+|+++|.+|..+
T Consensus 225 ~~~l~-----------------------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~a~~~~ 277 (338)
T 2if4_A 225 ALAVK-----------------------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE----EKNPKALFRRGKAKAEL 277 (338)
T ss_dssp HHHHH-----------------------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTT
T ss_pred HHHHH-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHc
Confidence 33321 1256778999999999999999999999998 88899999999999999
Q ss_pred hchhHHHHHHHHHHHhCCChHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 891 RHITDAIADCNLAIALDGNYLKAISRRATLY-EMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 891 Gq~eeAi~~lekALeldP~~~~A~~~LA~ay-~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
|++++|+.+|+++++++|++..++..++.+. ...+.+++|...|++++.+.|.+..
T Consensus 278 g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 278 GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp TCHHHHHHHHHHTTC------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 9999999999999999999999999999984 4567788899999999999887643
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.11 E-value=1.3e-10 Score=118.41 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=87.1
Q ss_pred HHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchh----------HHHHHHHHHHHhCCChHHHHHHHHH
Q 039706 850 FQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHIT----------DAIADCNLAIALDGNYLKAISRRAT 919 (1166)
Q Consensus 850 ~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~e----------eAi~~lekALeldP~~~~A~~~LA~ 919 (1166)
-+.+.|++|+..|+++++++ |.++.+|+++|.++..+++++ +|+..|++||+++|++..+|+++|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~----P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 45678999999999999999 999999999999999998864 9999999999999999999999999
Q ss_pred HHHHhh-----------CHHHHHHHHHHHHHHhhhhHHh
Q 039706 920 LYEMIR-----------DYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 920 ay~~lG-----------dyeeAi~~yekALeL~P~~~e~ 947 (1166)
+|..+| ++++|+.+|++|++++|++...
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 999885 8999999999999999987543
No 201
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.11 E-value=6.7e-10 Score=104.92 Aligned_cols=102 Identities=24% Similarity=0.294 Sum_probs=95.2
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh-------
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY------- 910 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~------- 910 (1166)
.+..+..+|..++..|++++|+.+|++++.+. |.++.+++++|.+|..+|++++|+.+|++++.+.|.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 35567788999999999999999999999988 7788999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 911 LKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 911 ~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
..+++.+|.+|..+|++++|+..|++++++.|+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999999998773
No 202
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.09 E-value=1.9e-10 Score=109.80 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=84.3
Q ss_pred HcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHH
Q 039706 851 QAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHA 930 (1166)
Q Consensus 851 ~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeA 930 (1166)
..|++++|+.+|+++|++.+ ..|....+|+++|.+|..+|++++|+..|+++++++|+++.+++.+|.+|..+|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 36899999999999999820 02889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHh
Q 039706 931 ASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 931 i~~yekALeL~P~~~e~ 947 (1166)
+..|++++++.|.+.+.
T Consensus 81 ~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhCCCcHHH
Confidence 99999999998887553
No 203
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.09 E-value=2.6e-11 Score=115.56 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=54.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCc
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPS 1061 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~ 1061 (1166)
.+||.+||+.. ++..+||++||++|++|||||++.. ....+.+..|+++|++|++||++|+|+.
T Consensus 41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~-------------~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQK-------------GASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHT-------------TCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCc-------------ccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 58999999996 9999999999999999999997521 0123456678999999999999999986
No 204
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.08 E-value=3.4e-09 Score=98.94 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
..+|+.+|.++...|++++|+..|++++..+|.+..+++.+|.++...|++++|+.+|++++.+.|.+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------- 81 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY------- 81 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH-------
Confidence 4567889999999999999999999999999999999999999999999999999999999999887533211
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR 746 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG 746 (1166)
..... +...+++++|+.++++++.+.|.+..++..++.++..+|
T Consensus 82 -------------~la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 82 -------------NLGNA--YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -------------HHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred -------------HHHHH--HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 11111 224799999999999999999999999999999987754
No 205
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.08 E-value=1.3e-10 Score=106.89 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=95.1
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCC--hHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGN--YLKAISR 916 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~--~~~A~~~ 916 (1166)
...+..+|.+++..|++++|+.+|++++.+. |....+|+++|.++..+|++++|+..|+++++++|. +..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD----PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 3456778999999999999999999999988 778899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHh-hCHHHHHHHHHHHHHHhhhh
Q 039706 917 RATLYEMI-RDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 917 LA~ay~~l-GdyeeAi~~yekALeL~P~~ 944 (1166)
+|.+|..+ |++++|+..|++++...|..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999876653
No 206
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.08 E-value=1.2e-10 Score=133.01 Aligned_cols=109 Identities=24% Similarity=0.325 Sum_probs=93.1
Q ss_pred hHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhH-----------------HHHHHHHHHHHHhhchhHHHH
Q 039706 836 VRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAA-----------------ICFCNRAAAYKALRHITDAIA 898 (1166)
Q Consensus 836 ~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a-----------------~a~~nlA~ay~~lGq~eeAi~ 898 (1166)
+..+..++.+|+.++..|+|++|+.+|++|+.+. |.+. .+|+++|.||..+|+|++|+.
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM----GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS----CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3456667888999999999999999999999987 5554 489999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhh
Q 039706 899 DCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKS 948 (1166)
Q Consensus 899 ~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~ 948 (1166)
+|+++|+++|++..+|+++|.+|..+|++++|+.+|++++++.|.+....
T Consensus 252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~ 301 (338)
T 2if4_A 252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301 (338)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999999999999999999999999876654
No 207
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.07 E-value=1.1e-09 Score=126.96 Aligned_cols=136 Identities=17% Similarity=0.129 Sum_probs=113.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCc--hhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGK--MLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE 871 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k--~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e 871 (1166)
+..+|..|+..|++++|+..|++++...+.. ...........+..+..+.++|.+|+..++|++|+.+|++||+++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--
Confidence 4668999999999999999999985411100 000000011345567889999999999999999999999999988
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHH
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASD 933 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ 933 (1166)
|.++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..++++++|...
T Consensus 304 --p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 --PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999998887654
No 208
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.06 E-value=2.2e-09 Score=100.29 Aligned_cols=112 Identities=23% Similarity=0.255 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
..+|.++...|++++|+..+++++...+ .....+..+|.++...|++++|+.+|++++.+. |
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~ 74 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDP--------------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----P 74 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----T
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCc--------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----C
Confidence 4456666666666666666666532211 123344455666666666666666666666655 4
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHh
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMI 924 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~l 924 (1166)
....+++++|.+|..+|++++|+..+++++.++|.+..++..++.++..+
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 45556666666666666666666666666666666666666666665543
No 209
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.06 E-value=4.4e-09 Score=97.34 Aligned_cols=113 Identities=18% Similarity=0.092 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
...++.+|.+++..|++++|+..|++++.++|.+..+++.+|.++..+|++++|+.+|++++.+.|.+...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------- 76 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS------- 76 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH-------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH-------
Confidence 3567889999999999999999999999999999999999999999999999999999999999998543221
Q ss_pred HhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 688 GLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEAL 742 (1166)
Q Consensus 688 ~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y 742 (1166)
..+.. +...|++++|+..+++++++.|.++.++..++.+.
T Consensus 77 -------------~~a~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 77 -------------RKAAA--LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp -------------HHHHH--HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -------------HHHHH--HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 11111 22479999999999999999999999998888765
No 210
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.05 E-value=1.6e-09 Score=104.50 Aligned_cols=117 Identities=13% Similarity=0.039 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 607 EKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 607 e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
....|+.+|.+++..|+|++|+..|++++.++|.+..+++.+|.+|..+|++++|+.+|++++.++|++...+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----- 82 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF----- 82 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-----
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH-----
Confidence 345678899999999999999999999999999999999999999999999999999999999988875432211
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHHc
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY-----SEKLLEMKAEALFML 745 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~-----~~~al~~lA~~y~~l 745 (1166)
.+.+ +...|++++|+..|++++.+.|. ...+...+..+....
T Consensus 83 ---------------l~~~--~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 83 ---------------LGQC--QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp ---------------HHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred ---------------HHHH--HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12367788888888888877776 555555555554433
No 211
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.03 E-value=9.4e-11 Score=140.54 Aligned_cols=137 Identities=12% Similarity=0.009 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+|+++|.+|+..|+|++|+..|++|++++|++..+|..+|.+|..+|++++|+.+|+++++++|++...+..+
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l------ 80 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR------ 80 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH------
Confidence 34677899999999999999999999999999999999999999999999999999999999999864432221
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH--HHHccCHHHHHHHHH----------
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEA--LFMLRKYEEVIQLCE---------- 756 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~--y~~lGdyeeAi~~le---------- 756 (1166)
+.+ +...|++++|+..|++++++.|.+..++..++.+ +..+|++++|+..++
T Consensus 81 --------------g~~--~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 144 (477)
T 1wao_1 81 --------------AAS--NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 144 (477)
T ss_dssp --------------HHH--HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCT
T ss_pred --------------HHH--HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhh
Confidence 111 2247999999999999999999999999999988 889999999999999
Q ss_pred -HHHHhccCCCC
Q 039706 757 -QTFHFAEKNSP 767 (1166)
Q Consensus 757 -kALel~p~n~~ 767 (1166)
+++.+.|....
T Consensus 145 ~~al~~~~~~~~ 156 (477)
T 1wao_1 145 IESMTIEDEYSG 156 (477)
T ss_dssp TSSCCCCTTCCS
T ss_pred hhhccccccccc
Confidence 55555555433
No 212
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.02 E-value=5.1e-11 Score=124.26 Aligned_cols=66 Identities=27% Similarity=0.524 Sum_probs=58.4
Q ss_pred Cccchhhhc------ccCC-CCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHH
Q 039706 982 IPLDMYLIL------GVES-SVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAY 1054 (1166)
Q Consensus 982 ~~~dyY~iL------Gl~~-~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy 1054 (1166)
...+||.+| |+++ +++..+|+++||+++++|||||++. +...|+.|++||
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----------------------a~~~f~~i~~AY 65 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-----------------------GSEQSSTLNQAY 65 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-----------------------CSSGGGSHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-----------------------HHHHHHHHHHHH
Confidence 346999999 4664 8999999999999999999999862 446799999999
Q ss_pred HHhCCCchhcccchhh
Q 039706 1055 AVLSDPSKRSRYDLEE 1070 (1166)
Q Consensus 1055 ~vLsd~~kR~~YD~~~ 1070 (1166)
+||+||.+|..||..+
T Consensus 66 ~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 66 HTLKDPLRRSQYMLKL 81 (181)
T ss_dssp HHHHSHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHH
Confidence 9999999999999966
No 213
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.00 E-value=8e-11 Score=141.15 Aligned_cols=135 Identities=13% Similarity=0.062 Sum_probs=114.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCc
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHP 874 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p 874 (1166)
..+|.+|+..|++++|+.+|++++... +..+..+.++|.++...|+|++|+.+|++|++++ |
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p 71 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN--------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----K 71 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC----T
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C
Confidence 346777889999999999999985433 3346778889999999999999999999999998 8
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH--HHHhhCHHHHHHHHH-----------HHHHHh
Q 039706 875 FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL--YEMIRDYDHAASDFH-----------RLIALL 941 (1166)
Q Consensus 875 ~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a--y~~lGdyeeAi~~ye-----------kALeL~ 941 (1166)
.++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.+ +..+|++++|+..++ +++++.
T Consensus 72 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~ 151 (477)
T 1wao_1 72 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIE 151 (477)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccc
Confidence 8899999999999999999999999999999999999999999998 889999999999999 777776
Q ss_pred hhhHHh
Q 039706 942 TKQIEK 947 (1166)
Q Consensus 942 P~~~e~ 947 (1166)
|.....
T Consensus 152 ~~~~~~ 157 (477)
T 1wao_1 152 DEYSGP 157 (477)
T ss_dssp TTCCSC
T ss_pred cccccc
Confidence 665443
No 214
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.99 E-value=1.4e-10 Score=102.68 Aligned_cols=57 Identities=28% Similarity=0.349 Sum_probs=50.6
Q ss_pred cchhhhcccCC-CCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCch
Q 039706 984 LDMYLILGVES-SVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSK 1062 (1166)
Q Consensus 984 ~dyY~iLGl~~-~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~k 1062 (1166)
.++|.+|||++ .++.++|+++||+++++||||+.+ ..++|++|++||++|+|+..
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g------------------------~~~~f~~i~~Aye~L~~~~~ 69 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG------------------------SPFLATKINEAKDFLEKRGI 69 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC------------------------CHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC------------------------CHHHHHHHHHHHHHHhhhhh
Confidence 48999999998 799999999999999999999954 12489999999999999877
Q ss_pred hc
Q 039706 1063 RS 1064 (1166)
Q Consensus 1063 R~ 1064 (1166)
|+
T Consensus 70 rk 71 (71)
T 2guz_A 70 SK 71 (71)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 215
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.98 E-value=1e-08 Score=97.85 Aligned_cols=118 Identities=10% Similarity=-0.042 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFL---RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEAS 686 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~---~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~ 686 (1166)
+++++|.+++..|+|++|+..|++++..+|++. .+++.+|.+|..+|++++|+.+|++++...|++....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~------- 76 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAA------- 76 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH-------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccH-------
Confidence 468899999999999999999999999999998 8999999999999999999999999999999853210
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc
Q 039706 687 DGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR 746 (1166)
Q Consensus 687 ~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG 746 (1166)
..+...+.+ +...|++++|+..|++++...|.++.+...+..+....+
T Consensus 77 ----------~~~~~la~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 77 ----------GGLLKLGLS--QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp ----------HHHHHHHHH--HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred ----------HHHHHHHHH--HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 111111222 224789999999999999999988877766665554443
No 216
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.96 E-value=1.8e-09 Score=99.23 Aligned_cols=103 Identities=15% Similarity=0.129 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDG 688 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~ 688 (1166)
.+++.+|.+++..|++++|+..|+++++++|.+..+++.+|.+|..+|++++|+.+|++++++.|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------- 73 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE------------- 73 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT-------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-------------
Confidence 3445577777777777777777777777777777777777777777777777777776666554430
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccCC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFML-RKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~l-GdyeeAi~~lekALel~p~n 765 (1166)
....++..+|.++..+ |++++|+.++++++...|..
T Consensus 74 -----------------------------------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 74 -----------------------------------------YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred -----------------------------------------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 0556677777888888 88888888888887777654
No 217
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5.1e-09 Score=101.64 Aligned_cols=115 Identities=11% Similarity=0.060 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC
Q 039706 793 RCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES 872 (1166)
Q Consensus 793 r~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~ 872 (1166)
.+..+|..++..|++++|+.+|++++...+.. ......+..+|.++...++|++|+.+|++++.++
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 95 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATP-----------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--- 95 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-----------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---
Confidence 35678999999999999999999986655431 1135677888999999999999999999999988
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYE 922 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~ 922 (1166)
|.+..+|+++|.+|..+|++++|+.+|++++.++|++..++..++.+..
T Consensus 96 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 96 -GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp -SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred -ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 7789999999999999999999999999999999999999988887754
No 218
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.94 E-value=6.8e-09 Score=97.94 Aligned_cols=118 Identities=11% Similarity=0.102 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
+..+|.+++..|++++|+.+|++++...+ .....+..+|.++...|++++|+.+|++++.+.+...
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDP--------------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc
Confidence 56799999999999999999999754332 2356677889999999999999999999999873221
Q ss_pred chh---HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 874 PFA---AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 874 p~~---a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
+.. ..+++++|.+|..+|++++|+.+|++++.+.| +..++..++.++..+++
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 111 88999999999999999999999999999999 58888888888776654
No 219
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=5.1e-10 Score=103.83 Aligned_cols=95 Identities=21% Similarity=0.279 Sum_probs=87.4
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh------H
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY------L 911 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~------~ 911 (1166)
.+..+..+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+.+|+++++++|++ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 35667788999999999999999999999998 8889999999999999999999999999999999998 8
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 912 KAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 912 ~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
.+++.+|.++..+|++++|+..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9999999999999998888776554
No 220
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.93 E-value=7.3e-09 Score=97.86 Aligned_cols=87 Identities=14% Similarity=0.079 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 856 SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 856 eEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
++|+..|++++..+ |.++.+|+++|.+|..+|++++|+..|++++.++|.+..+|+.+|.+|..+|++++|+..|+
T Consensus 2 ~~a~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQG----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46899999999988 88899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHH
Q 039706 936 RLIALLTKQIE 946 (1166)
Q Consensus 936 kALeL~P~~~e 946 (1166)
+++++.|...+
T Consensus 78 ~al~~~~~~~~ 88 (115)
T 2kat_A 78 SGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHhcccccc
Confidence 99999887643
No 221
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.91 E-value=2.5e-09 Score=109.01 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=88.2
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHH
Q 039706 620 ALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECM 699 (1166)
Q Consensus 620 ~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~ 699 (1166)
++++|++|+..|+++++++|+++.+|+++|.++..+++++.+.....
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~--------------------------------- 60 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ--------------------------------- 60 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH---------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh---------------------------------
Confidence 45679999999999999999999999999999999988876655321
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhccCC
Q 039706 700 QRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLR-----------KYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 700 ~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lG-----------dyeeAi~~lekALel~p~n 765 (1166)
.+++|+..|++||+++|+...+|+.+|.+|..+| ++++|+.+|+++++++|++
T Consensus 61 -------------~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 61 -------------MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp -------------HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred -------------HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 2578899999999999999999999999999885 8999999999999999975
No 222
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=2.8e-08 Score=112.09 Aligned_cols=232 Identities=13% Similarity=-0.011 Sum_probs=162.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
.+.+..+|+.+|+|.... .++....+...++..+. ++ |+..|++.+...+......
T Consensus 48 ~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~----------- 103 (310)
T 3mv2_B 48 LFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYEL----------- 103 (310)
T ss_dssp HHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHH-----------
T ss_pred HHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHH-----------
Confidence 355678899999988531 23334445555555542 32 8888888876643321111
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISS--YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P--~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
..++.++ ...|++++|+.++.+.|..+| .+.+++..++.+|+.+|+.+.|.+.++++.+.+|+...+
T Consensus 104 ---------~~la~i~--~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~ 172 (310)
T 3mv2_B 104 ---------YLLATAQ--AILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG 172 (310)
T ss_dssp ---------HHHHHHH--HHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred ---------HHHHHHH--HHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc
Confidence 1122222 236999999999999999987 899999999999999999999999999998886620000
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHH--HHHHHHcC--CHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhh
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLI--FKSYFTLG--RLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKS 844 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lL--A~ay~~lG--d~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~ 844 (1166)
.. .+ ...+ +.+.+..| ++.+|...|+++....+. ......+++
T Consensus 173 ------------~d-------~~--l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~------------~~~~~lLln 219 (310)
T 3mv2_B 173 ------------DN-------EM--ILNLAESYIKFATNKETATSNFYYYEELSQTFPT------------WKTQLGLLN 219 (310)
T ss_dssp ------------HH-------HH--HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS------------HHHHHHHHH
T ss_pred ------------ch-------HH--HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC------------cccHHHHHH
Confidence 00 00 1223 33355566 999999999996443332 112223332
Q ss_pred hhHHHHHcCChHHHHHHHHHHHhccccC------CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 845 AGNEAFQAGRHSEAVEHYTAALSCTVES------HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 845 lG~~~~~~G~yeEAie~y~kALel~~e~------~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
++..+|+|++|...++.+++..|+. .|.++.++.|+..+...+|+ +|.++++++.+.+|+++.+.-
T Consensus 220 ---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 220 ---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp ---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 7899999999999999888764321 27799999999999999997 899999999999999986543
No 223
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.88 E-value=4.1e-09 Score=100.40 Aligned_cols=98 Identities=14% Similarity=-0.002 Sum_probs=82.2
Q ss_pred HcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHH
Q 039706 803 TLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCN 882 (1166)
Q Consensus 803 ~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~n 882 (1166)
.+|++++|+.+|++++.... ..+.....+..+|.+++..|+|++|+.+|+++++++ |.++.++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~-----------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~ 66 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL-----------QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF----PNHQALRVF 66 (117)
T ss_dssp -----CCCHHHHHHHHSSCC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCC-----------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchHHHHH
Confidence 46889999999999844211 135667888999999999999999999999999998 888999999
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 883 RAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 883 lA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
+|.+|..+|++++|+..|++++.+.|+++.+..
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999887654
No 224
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.86 E-value=2.3e-10 Score=145.16 Aligned_cols=68 Identities=37% Similarity=0.599 Sum_probs=40.6
Q ss_pred cchhhhcccCCCCCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhCCCchh
Q 039706 984 LDMYLILGVESSVSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLSDPSKR 1063 (1166)
Q Consensus 984 ~dyY~iLGl~~~as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLsd~~kR 1063 (1166)
.+||.+|||++.++.++||++||+++++|||||++.. ..|+++|++|++||++|+||.+|
T Consensus 21 ~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~--------------------~~~~~~f~~i~~ay~~L~~~~~r 80 (780)
T 3apo_A 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--------------------PNAHGDFLKINRAYEVLKDEDLR 80 (780)
T ss_dssp --CHHHHTCCTTCCHHHHHHHHCC-------------------------------------------CTHHHHHHSHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------hHHHHHHHHHHHHHHHHcChHHH
Confidence 5999999999999999999999999999999997521 35788999999999999999999
Q ss_pred cccchhhh
Q 039706 1064 SRYDLEEE 1071 (1166)
Q Consensus 1064 ~~YD~~~~ 1071 (1166)
+.||.++.
T Consensus 81 ~~yd~~~~ 88 (780)
T 3apo_A 81 KKYDKYGE 88 (780)
T ss_dssp HHHTTC--
T ss_pred HHHHhhcc
Confidence 99999775
No 225
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.81 E-value=1.1e-07 Score=118.68 Aligned_cols=197 Identities=6% Similarity=-0.074 Sum_probs=135.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccC--------CCCCccccCcccccCccchhh--hhh
Q 039706 719 GVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEK--------NSPPLDANGQSMELDSSESTK--HVS 788 (1166)
Q Consensus 719 e~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~--------n~~a~~~~g~~l~ld~~~~~~--~~~ 788 (1166)
..|++|+...|.+..++..++.+....|++++|..+|++++...+. .+.. ...+.. ...
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~-----------~~~~~~~~~~~ 433 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN-----------ESAINQLKSKL 433 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC-----------HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc-----------hhhhhhhccch
Confidence 4444455555555666666677777777777777777777654210 0000 000000 001
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcC-ChHHHHHHHHHHHh
Q 039706 789 FRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAG-RHSEAVEHYTAALS 867 (1166)
Q Consensus 789 ~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G-~yeEAie~y~kALe 867 (1166)
..+ |...+......|..+.|...|.+|+...+. .. ...+...+.+.+..+ +++.|...|+.+|+
T Consensus 434 ~~v--Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~-----------~~--~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 434 TYV--YCVYMNTMKRIQGLAASRKIFGKCRRLKKL-----------VT--PDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp HHH--HHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-----------SC--THHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----------CC--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 112 344667777889999999999998543110 00 112233355555554 59999999999999
Q ss_pred ccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 868 CTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG---NYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 868 l~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP---~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
.. |.....|...+......|+.+.|...|++|+...| .....|......-...|+.+.+...++++++..|+.
T Consensus 499 ~~----p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 499 YF----ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HC----CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 87 77788888888888899999999999999999988 456777778888888999999999999999999986
Q ss_pred H
Q 039706 945 I 945 (1166)
Q Consensus 945 ~ 945 (1166)
.
T Consensus 575 ~ 575 (679)
T 4e6h_A 575 N 575 (679)
T ss_dssp C
T ss_pred c
Confidence 3
No 226
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.76 E-value=5.8e-08 Score=116.70 Aligned_cols=141 Identities=9% Similarity=-0.057 Sum_probs=116.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc----ccCC
Q 039706 798 FKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT----VESH 873 (1166)
Q Consensus 798 A~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~----~e~~ 873 (1166)
+..+..+|+|++|+..+++++..... .--...+..+..+.++|.+|..+|+|++|+.+|+++|++. ...+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEP------VFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTT------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHH------hcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34566899999999999997542111 0012355678889999999999999999999999999875 3678
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-----C---CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIAL-----D---GNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel-----d---P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
|..+..++++|.+|..+|+|++|+..|++|+++ . |...+.+..++.++..++.|++|...|+++.+..-++
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999987 2 4445677889999999999999999999997654333
No 227
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.75 E-value=4.6e-08 Score=87.16 Aligned_cols=84 Identities=25% Similarity=0.247 Sum_probs=74.9
Q ss_pred HHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHH
Q 039706 838 ELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRR 917 (1166)
Q Consensus 838 ~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~L 917 (1166)
.+..+..+|..++..+++++|+.+|++++.+. |.+..+|+++|.+|..+|++++|+..|+++++++|.+..++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 45667778999999999999999999999887 77788999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 039706 918 ATLYEMIR 925 (1166)
Q Consensus 918 A~ay~~lG 925 (1166)
|.++..+|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99987764
No 228
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.72 E-value=2.2e-08 Score=91.60 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=81.0
Q ss_pred hhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHH-HHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039706 843 KSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAI-CFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLY 921 (1166)
Q Consensus 843 ~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~-a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay 921 (1166)
+.+|..++..|+|++|+..|+++++++ |.+.. +|+++|.+|..+|++++|+..|+++++++|++..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence 456889999999999999999999988 88888 99999999999999999999999999999999988754
Q ss_pred HHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 922 EMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 922 ~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
+.+.+|+..|++++.+.|.+.
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHCCS
T ss_pred ---HHHHHHHHHHHHHhccCcccc
Confidence 677888899998888877653
No 229
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.68 E-value=4.7e-08 Score=90.82 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=69.0
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|...+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999887644
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=2.5e-05 Score=93.95 Aligned_cols=307 Identities=11% Similarity=-0.069 Sum_probs=184.7
Q ss_pred CcchhHHHHHHHHHhchH-HHHHHHHHHHHHcC-ChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH----HcCChHHH
Q 039706 591 EPNLASAETIAAQEACEK-WRLSNRAATRMALG-RMRDALSDCMLAVAI---DPDFLRVQVRAANCHL----ALGEIEDA 661 (1166)
Q Consensus 591 ep~~A~a~~~aAIe~~e~-~ay~nrA~ayl~lG-~y~eAI~~fekALel---dP~~~~A~~~LA~lyl----~lGd~eeA 661 (1166)
+.+.+..-+..|+..+|. ..|..........+ ..+.....|+.|+.. +|.....|...+..+. ..++.+.+
T Consensus 29 ~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v 108 (493)
T 2uy1_A 29 DYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI 108 (493)
T ss_dssp CHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence 344555666677776653 23333343333444 234556778888874 7888888888887754 35678899
Q ss_pred HHHHHHHHHcCCCchhH--HHHHHHHHHHh----------------hhHH----hHHH--------HHHHHHHHHHhhcC
Q 039706 662 SKYFRMCLQSGSDVCVD--QKIAVEASDGL----------------QKAQ----KVSE--------CMQRSAQLLQNKTS 711 (1166)
Q Consensus 662 l~~fekALel~P~n~~a--~~~l~Ea~~~L----------------~k~~----~~~e--------~~~~a~~~l~~~~~ 711 (1166)
...|++||.. |..... +..+....... .... .+.. .+..+.........
T Consensus 109 R~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 109 RNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 9999999985 542211 11111100000 0000 0000 11111111110000
Q ss_pred C--C---HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhh
Q 039706 712 N--D---AEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKH 786 (1166)
Q Consensus 712 g--d---~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~ 786 (1166)
+ + ...+...|+++|...|..+.+|+..+..+...|+.++|...|++++.. |....
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~------------------- 247 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF------------------- 247 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH-------------------
T ss_pred cCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH-------------------
Confidence 1 1 345678999999999999999999999999999999999999999999 75421
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHH
Q 039706 787 VSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAAL 866 (1166)
Q Consensus 787 ~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kAL 866 (1166)
+|.. |....+.++....+..+........ . .+.........|...+..+.+.+..+.|...|.+|
T Consensus 248 ----l~~~------y~~~~e~~~~~~~l~~~~~~~~~~~--~--~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A- 312 (493)
T 2uy1_A 248 ----LSLY------YGLVMDEEAVYGDLKRKYSMGEAES--A--EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL- 312 (493)
T ss_dssp ----HHHH------HHHHTTCTHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-
T ss_pred ----HHHH------HHhhcchhHHHHHHHHHHHhhccch--h--hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 1111 1111111111111111110000000 0 00001112234555566667788899999999999
Q ss_pred hccccCCchhHHHHHHHHHHHHHhh-chhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 867 SCTVESHPFAAICFCNRAAAYKALR-HITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 867 el~~e~~p~~a~a~~nlA~ay~~lG-q~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
... +....+|...|......+ +.+.|...|+.+++..|+.+..+...+.....+|+.+.|...|+++
T Consensus 313 ~~~----~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 313 GNE----GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp TTS----CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred hCC----CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 422 234567777777777777 5999999999999999999888888888888999999999999987
No 231
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.64 E-value=3.6e-07 Score=109.78 Aligned_cols=130 Identities=12% Similarity=0.006 Sum_probs=102.3
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--------
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL-------- 906 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel-------- 906 (1166)
+......+..+..+|+|++|+..|+++|++.. ..+|..+.++.++|.+|..+|+|++|+.+++++|++
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 33445566678889999999999999998753 567888999999999999999999999999999987
Q ss_pred CCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCCCchhhhhHHHHHHHHhhhhhh
Q 039706 907 DGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSGVSDRSINLANDLRQARMRLTA 973 (1166)
Q Consensus 907 dP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~~~dr~~~i~~~Lr~Aq~~Lk~ 973 (1166)
+|+-+..+.+||.+|..+|+|++|+..|++|+++........ .....++...+.+++..+..
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~-----Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS-----HPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-----SHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHHHHHH
Confidence 355567899999999999999999999999999976654322 11123344455555554443
No 232
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.62 E-value=2.3e-07 Score=85.70 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV 675 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n 675 (1166)
..+|+++|.+++..|+|++|+..|+++++++|.+..+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 45678899999999999999999999999999999999999999999999999999999999999986
No 233
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.62 E-value=3e-07 Score=81.77 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAV 683 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~ 683 (1166)
..+++++|.+++..|++++|+..|++++.++|.+..+++.+|.+|..+|++++|+.+|+++++++|.+...+..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999998765544443
No 234
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.60 E-value=3.7e-07 Score=86.04 Aligned_cols=82 Identities=12% Similarity=0.040 Sum_probs=71.8
Q ss_pred hHHHhhhHHhhCcchhHHHHHHHHHhchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 039706 580 SEVDRGQEIKQEPNLASAETIAAQEACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIE 659 (1166)
Q Consensus 580 a~~~~~~aik~ep~~A~a~~~aAIe~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~e 659 (1166)
++..+.+++..+|++. .+|+++|.+|+..|++++|+..|++++.++|.+..+|+.+|.+|..+|+++
T Consensus 4 a~~~~~~al~~~p~~~-------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 4 ITERLEAMLAQGTDNM-------------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp HHHHHHHHHTTTCCCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhCCCcH-------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH
Confidence 4455666666666644 456779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 039706 660 DASKYFRMCLQSGSD 674 (1166)
Q Consensus 660 eAl~~fekALel~P~ 674 (1166)
+|+.+|++++.+.|.
T Consensus 71 ~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 71 GARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999998775
No 235
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.58 E-value=2.9e-07 Score=83.99 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLR-VQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~-A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
+++|.+++..|+|++|+..|+++++++|.+.. +++.+|.+|..+|++++|+.+|+++++++|++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 67899999999999999999999999999999 99999999999999999999999999999986543
No 236
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.58 E-value=1.6e-07 Score=87.28 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=64.4
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
+..+.+++++|.+|+.+|+|++|+..|+++++++|++..+|+.+|.+|..+|++++|+..|++++++.|.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3445677889999999999999999999999999999999999999999999999999999999987654
No 237
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.42 E-value=2.1e-06 Score=101.44 Aligned_cols=105 Identities=8% Similarity=-0.024 Sum_probs=90.4
Q ss_pred HhhhhHHHHHcCChHHHHHHHHHHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--------CCC
Q 039706 842 RKSAGNEAFQAGRHSEAVEHYTAALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--------DGN 909 (1166)
Q Consensus 842 l~~lG~~~~~~G~yeEAie~y~kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--------dP~ 909 (1166)
.......+..+|+|++|+..|+++|++.. ..+|..+.++.++|.+|..+|+|++|+.+++++|++ +|.
T Consensus 290 ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 290 SLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 33445567789999999999999998742 567888999999999999999999999999999987 345
Q ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 910 YLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 910 ~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
-+..++++|.+|..+|+|++|+..|++|+++......
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG 406 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 406 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence 5678999999999999999999999999999766543
No 238
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.32 E-value=1.8e-06 Score=102.09 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=87.1
Q ss_pred hHHHHHcCChHHHHHHHHHHHhccc----cCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHh--------CCChHHH
Q 039706 846 GNEAFQAGRHSEAVEHYTAALSCTV----ESHPFAAICFCNRAAAYKALRHITDAIADCNLAIAL--------DGNYLKA 913 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kALel~~----e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALel--------dP~~~~A 913 (1166)
+......|+|++|+..|+++|++.. ..+|..+.++.++|.+|..+|+|++|+.+|+++|++ +|+-+..
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 3334456899999999999998653 567888999999999999999999999999999987 3555678
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+.+||.+|..+|+|++|+..|++|+++......
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG 417 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHG 417 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999766543
No 239
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.28 E-value=3.1e-06 Score=83.68 Aligned_cols=110 Identities=12% Similarity=-0.045 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHH
Q 039706 805 GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRA 884 (1166)
Q Consensus 805 Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA 884 (1166)
+++++|+.+|+++...... .+. +|.+|...+.+++|+.+|++|.+. .++.+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--------------~a~----lg~~y~~g~~~~~A~~~~~~Aa~~------g~~~a~~~Lg 64 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--------------FGC----LSLVSNSQINKQKLFQYLSKACEL------NSGNGCRFLG 64 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--------------THH----HHHHTCTTSCHHHHHHHHHHHHHT------TCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--------------hhh----HHHHHHcCCCHHHHHHHHHHHHcC------CCHHHHHHHH
Confidence 4688999999997443221 111 688888888999999999999984 4678999999
Q ss_pred HHHHH----hhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHH
Q 039706 885 AAYKA----LRHITDAIADCNLAIALDGNYLKAISRRATLYEM----IRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 885 ~ay~~----lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~----lGdyeeAi~~yekALeL 940 (1166)
.+|.. .+++++|+.+|++|.+. .++.+++++|.+|.. .+++++|+.+|+++.+.
T Consensus 65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 65 DFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99999 89999999999999987 679999999999999 99999999999999976
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.26 E-value=4e-05 Score=85.05 Aligned_cols=86 Identities=12% Similarity=-0.003 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHhccccCCch--hHHHHHHHHHHHHHh-----hchhHHHHHHHHHHHhCCCh-HHHHHHHHHHHHH-hh
Q 039706 855 HSEAVEHYTAALSCTVESHPF--AAICFCNRAAAYKAL-----RHITDAIADCNLAIALDGNY-LKAISRRATLYEM-IR 925 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~--~a~a~~nlA~ay~~l-----Gq~eeAi~~lekALeldP~~-~~A~~~LA~ay~~-lG 925 (1166)
..+|...+++||+++ |. +..+|..+|.+|..+ |+.++|.++|++||+++|+. +.+++..|..|.. ++
T Consensus 179 l~~A~a~lerAleLD----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDLW----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 568899999999999 66 677999999999996 99999999999999999985 9999999999988 59
Q ss_pred CHHHHHHHHHHHHHHhhhh
Q 039706 926 DYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 926 dyeeAi~~yekALeL~P~~ 944 (1166)
++++|...+++++...|..
T Consensus 255 d~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHHcCCCCC
Confidence 9999999999999987774
No 241
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.24 E-value=1.1e-05 Score=92.78 Aligned_cols=135 Identities=10% Similarity=0.010 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHH------HcCCC
Q 039706 608 KWRLSNRAATRMALGR---MRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEI----EDASKYFRMCL------QSGSD 674 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~---y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~----eeAl~~fekAL------el~P~ 674 (1166)
++-+|.+|..++..+. +.+|+.+|++|++++|+++.+|..++.+|.....+ ......+..++ .++|.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 4667889999888754 58999999999999999999999999998732111 01111111111 12222
Q ss_pred chhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHH
Q 039706 675 VCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQL 754 (1166)
Q Consensus 675 n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~ 754 (1166)
.+. ++...... ....|++++|+..+++|+.++|. ..++..+|.++...|++++|++.
T Consensus 276 ~a~--------------------~~~alal~--~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~ 332 (372)
T 3ly7_A 276 LSI--------------------IYQIKAVS--ALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADA 332 (372)
T ss_dssp CHH--------------------HHHHHHHH--HHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHH--------------------HHHHHHHH--HHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 111 11111111 12359999999999999999975 67889999999999999999999
Q ss_pred HHHHHHhccCC
Q 039706 755 CEQTFHFAEKN 765 (1166)
Q Consensus 755 lekALel~p~n 765 (1166)
|.+|+.++|..
T Consensus 333 ~~~AlrL~P~~ 343 (372)
T 3ly7_A 333 YLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHSCSH
T ss_pred HHHHHhcCCCc
Confidence 99999999854
No 242
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.19 E-value=4.2e-06 Score=77.63 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=66.3
Q ss_pred CchhHHHHHHHHHHHHHhhc---hhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 873 HPFAAICFCNRAAAYKALRH---ITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq---~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
.|.++.++..+|.+++..++ .++|...+++||+++|+++.+++.+|.+++..|+|++|+..|+++++..|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 37888999999999987766 799999999999999999999999999999999999999999999998877
No 243
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.16 E-value=1.5e-05 Score=94.28 Aligned_cols=120 Identities=16% Similarity=0.052 Sum_probs=95.8
Q ss_pred HHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc----ccCCch
Q 039706 800 SYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT----VESHPF 875 (1166)
Q Consensus 800 ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~----~e~~p~ 875 (1166)
-+...|++++|+..+++++...... --...+..+..+.++|.+|..+|+|++|+.+|+++|.+. +..+|.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~------lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSER------LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCC------CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCc------CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 3567899999999999986533221 012345668888999999999999999999999999865 467899
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHh-----CCCh---HHHHHHHHHHHHHhh
Q 039706 876 AAICFCNRAAAYKALRHITDAIADCNLAIAL-----DGNY---LKAISRRATLYEMIR 925 (1166)
Q Consensus 876 ~a~a~~nlA~ay~~lGq~eeAi~~lekALel-----dP~~---~~A~~~LA~ay~~lG 925 (1166)
.+..++++|.+|..+|++++|+..|++|+++ .|++ ..++.+|+.+...++
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987 3444 455566776665543
No 244
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.14 E-value=2.4e-05 Score=89.94 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=49.0
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhh
Q 039706 874 PFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
|..+.+|..+|.++...|++++|+..+++|+.++|+ ..+|..+|.++...|++++|+..|++|+.+.|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 566666666666666667777777777777777764 4566667777777777777777777777777765
No 245
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.14 E-value=1.2e-05 Score=74.59 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 039706 608 KWRLSNRAATRMALGR---MRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSD 674 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~---y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~ 674 (1166)
+..++.+|.+++..++ ..+|...+++||+++|+++.+++.+|.+++..|+|++|+.+|+++++.+|.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4456668999887666 799999999999999999999999999999999999999999999999998
No 246
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.10 E-value=1.5e-05 Score=78.61 Aligned_cols=120 Identities=12% Similarity=-0.037 Sum_probs=97.3
Q ss_pred cCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCch
Q 039706 746 RKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKM 825 (1166)
Q Consensus 746 GdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~ 825 (1166)
+++++|+.+|+++.+... +.+ . +|.+|...+.+++|+.+|+++...
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a--------------------------~-lg~~y~~g~~~~~A~~~~~~Aa~~----- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFG--------------------------C-LSLVSNSQINKQKLFQYLSKACEL----- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTH--------------------------H-HHHHTCTTSCHHHHHHHHHHHHHT-----
T ss_pred cCHHHHHHHHHHHHcCCC--Hhh--------------------------h-HHHHHHcCCCHHHHHHHHHHHHcC-----
Confidence 468899999999987642 211 2 788888888999999999997332
Q ss_pred hhhhhhhccchHHHHHHhhhhHHHHH----cCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHH----hhchhHHH
Q 039706 826 LESLIPLAGTVRELLCRKSAGNEAFQ----AGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKA----LRHITDAI 897 (1166)
Q Consensus 826 le~a~~L~~~~~~a~~l~~lG~~~~~----~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~----lGq~eeAi 897 (1166)
.....+.++|.+|.. .+++++|+.+|++|.+. .++.+++++|.+|.. .+++++|+
T Consensus 55 -----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 117 (138)
T 1klx_A 55 -----------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAV 117 (138)
T ss_dssp -----------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred -----------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHH
Confidence 235667888999999 89999999999999974 467899999999999 89999999
Q ss_pred HHHHHHHHhCCChHHHHHHHH
Q 039706 898 ADCNLAIALDGNYLKAISRRA 918 (1166)
Q Consensus 898 ~~lekALeldP~~~~A~~~LA 918 (1166)
.+|++|.+.. ++.+...++
T Consensus 118 ~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 118 KTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHCC--CHHHHHHHh
Confidence 9999999884 456665554
No 247
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.07 E-value=2.1e-05 Score=73.88 Aligned_cols=79 Identities=13% Similarity=-0.063 Sum_probs=69.0
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhccccC---CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHH
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES---HPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISR 916 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~---~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~ 916 (1166)
.....+|..++..++|..|+.+|++|+...... ......++.++|.+|.++|+++.|+..++++++++|++..++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 345568999999999999999999999875321 34678899999999999999999999999999999999999888
Q ss_pred HH
Q 039706 917 RA 918 (1166)
Q Consensus 917 LA 918 (1166)
++
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 248
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.06 E-value=0.00034 Score=84.03 Aligned_cols=107 Identities=7% Similarity=-0.167 Sum_probs=74.2
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCch------------------------------------hHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPF------------------------------------AAICFCN 882 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~------------------------------------~a~a~~n 882 (1166)
...|...+..+...|+.++|...|++|+.. |..... ...+|..
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 445666688888999999999999999987 543210 1123444
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHhhhhHHh
Q 039706 883 RAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIR-DYDHAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 883 lA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lG-dyeeAi~~yekALeL~P~~~e~ 947 (1166)
.+..+.+.+..+.|...|.+| ...+.....|...|.+....+ +.+.|...|+.+++..|+..+.
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 444455667788888888888 333334566666677666666 5888999999999887776543
No 249
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.97 E-value=3.4e-05 Score=91.26 Aligned_cols=105 Identities=11% Similarity=-0.051 Sum_probs=85.4
Q ss_pred HcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc----ccCCchhHH
Q 039706 803 TLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT----VESHPFAAI 878 (1166)
Q Consensus 803 ~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~----~e~~p~~a~ 878 (1166)
..|+|++|+..+++++..... .--...+..+..+.++|.+|..+|+|++|+.+|+++|++. ...+|..+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSS------VFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTT------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhC------ccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 357899999999997542111 0012345678889999999999999999999999999875 367899999
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHh-----CCChHHH
Q 039706 879 CFCNRAAAYKALRHITDAIADCNLAIAL-----DGNYLKA 913 (1166)
Q Consensus 879 a~~nlA~ay~~lGq~eeAi~~lekALel-----dP~~~~A 913 (1166)
.++|+|.+|..+|+|++|+..|++|+++ .|+++..
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999999999999999999987 3666543
No 250
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.94 E-value=4.6e-05 Score=76.96 Aligned_cols=89 Identities=8% Similarity=-0.009 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhh---chhHHHHHHHHHHHhC-C-ChHHHHHHHHHHHHHhhCHHH
Q 039706 855 HSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALR---HITDAIADCNLAIALD-G-NYLKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 855 yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lG---q~eeAi~~lekALeld-P-~~~~A~~~LA~ay~~lGdyee 929 (1166)
...+.+.|.+.+..+ +.+..+.+++|+++.+.. +.++|+..++.+++.+ | ...++++.+|..|+++++|++
T Consensus 14 l~~~~~~y~~e~~~~----~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccC----CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 455677788887765 678899999999999977 7889999999999999 7 678999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHh
Q 039706 930 AASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 930 Ai~~yekALeL~P~~~e~ 947 (1166)
|+.+++++|++.|++.++
T Consensus 90 A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 999999999999988664
No 251
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.79 E-value=0.00016 Score=67.64 Aligned_cols=68 Identities=9% Similarity=-0.106 Sum_probs=61.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAID-------PDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeld-------P~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
.+.+|..++..++|..|+..|++|++.. +....++..+|.+|.++|+++.|+.++++++++.|++...
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4679999999999999999999999863 3457899999999999999999999999999999997554
No 252
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.75 E-value=0.00077 Score=74.83 Aligned_cols=86 Identities=9% Similarity=-0.000 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhccCC-CCCccccCcccccCccchh
Q 039706 713 DAEIALGVIDEALFISSY--SEKLLEMKAEALFML-----RKYEEVIQLCEQTFHFAEKN-SPPLDANGQSMELDSSEST 784 (1166)
Q Consensus 713 d~eeALe~lekALel~P~--~~~al~~lA~~y~~l-----GdyeeAi~~lekALel~p~n-~~a~~~~g~~l~ld~~~~~ 784 (1166)
....|...++++++++|. +..+|..+|.+|... |+.++|..+|+++|+++|+. ...
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~---------------- 241 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDH---------------- 241 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHH----------------
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchH----------------
Confidence 468899999999999999 567999999999996 99999999999999999964 321
Q ss_pred hhhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHhcCCCC
Q 039706 785 KHVSFRLWRCCLIFKSYFT-LGRLEEAIAALERHESGNGG 823 (1166)
Q Consensus 785 ~~~~~~~wr~~lLA~ay~~-lGd~eeAl~~lekAl~~~~~ 823 (1166)
++.+|..|+. .|++++|..++++++..++.
T Consensus 242 ---------~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 242 ---------HITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp ---------HHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3457777777 59999999999998775554
No 253
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.64 E-value=0.0002 Score=72.27 Aligned_cols=74 Identities=18% Similarity=0.031 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 608 KWRLSNRAATRMALG---RMRDALSDCMLAVAID-P-DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG---~y~eAI~~fekALeld-P-~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
..+.++.|.++.+.. +.++|+..++.+++.+ | ...++++.+|..|+++|+|++|+++++++|+++|++..+..+
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 455677999999988 7779999999999999 7 678999999999999999999999999999999997654433
No 254
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00011 Score=63.40 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=43.3
Q ss_pred chhhhcccCCC---CCHHHHHHHHHHHHhccCCCCCCcccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHhC
Q 039706 985 DMYLILGVESS---VSVADIKRGYRKAALRHHPDKAGQSLVRSDNGDDGLWKEIGAEVHKDAEKLFKMIAEAYAVLS 1058 (1166)
Q Consensus 985 dyY~iLGl~~~---as~~eIkkaYrklAlk~HPDK~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~F~~I~eAy~vLs 1058 (1166)
.-|.||||.+. ++.++|+++||++...+||||.+. ...+..|++|+++|.
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS------------------------~yl~~ki~~Ake~l~ 57 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS------------------------FYLQSKVYRAAERLK 57 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC------------------------HHHHHHHHHHHHHHH
Confidence 46889999998 899999999999999999999653 256788999999884
No 255
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.01 E-value=0.019 Score=68.91 Aligned_cols=166 Identities=9% Similarity=-0.008 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHc---------
Q 039706 734 LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTL--------- 804 (1166)
Q Consensus 734 al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~l--------- 804 (1166)
++..+-..+.+.|++++|+++|++..+..-. +.. ..|..+-.++...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~---------------pd~---------~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQ---------------LSQ---------YHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC---------------CCH---------HHHHHHHHHHTTCCCCSSSSCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC---------------CCH---------hHHHHHHHHHHhCCchhhhhhc
Confidence 4555567888999999999999988765211 110 0122232333332
Q ss_pred CCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHH
Q 039706 805 GRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRA 884 (1166)
Q Consensus 805 Gd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA 884 (1166)
+.+++|+..|++.....- ..+...+..+-..|.+.|++++|+++|++..... -..+..+|..+-
T Consensus 84 ~~l~~A~~lf~~M~~~G~-------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---~~Pd~~tyn~lI 147 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKV-------------VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG---IQPRLRSYGPAL 147 (501)
T ss_dssp HHHHHHHHHHHHHHHTTC-------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CCCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCccceehHHH
Confidence 347889999887533211 1124456667788999999999999999987643 133567788888
Q ss_pred HHHHHhhchhHHHHHHHHHHHhC--CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 885 AAYKALRHITDAIADCNLAIALD--GNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 885 ~ay~~lGq~eeAi~~lekALeld--P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.+|.+.|++++|+..+++..+.. | +...|..+-.+|.+.|+.++|...|++..+.
T Consensus 148 ~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 148 FGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 89999999999999999988764 4 4678888999999999999999999987643
No 256
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.75 E-value=0.0061 Score=59.49 Aligned_cols=90 Identities=9% Similarity=-0.018 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhH---HHHHHHHHHHhC-C-ChHHHHHHHHHHHHHhhCHH
Q 039706 854 RHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITD---AIADCNLAIALD-G-NYLKAISRRATLYEMIRDYD 928 (1166)
Q Consensus 854 ~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~ee---Ai~~lekALeld-P-~~~~A~~~LA~ay~~lGdye 928 (1166)
....+...|.+++..+ +....+.+++|+++.+..+..+ +|..++..+..+ | ..-+.++.+|..++++|+|.
T Consensus 16 ~l~~~~~~y~~e~~~~----~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccC----CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 4455667777777655 5677888999999988776555 999999988877 5 56788999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHh
Q 039706 929 HAASDFHRLIALLTKQIEK 947 (1166)
Q Consensus 929 eAi~~yekALeL~P~~~e~ 947 (1166)
+|+.+++.+|++.|.+.++
T Consensus 92 ~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCCCHHH
Confidence 9999999999999988664
No 257
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.69 E-value=0.06 Score=64.61 Aligned_cols=160 Identities=9% Similarity=-0.005 Sum_probs=113.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHc--CCCchh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAID--PDFLRVQVRAANCHLALGE---------IEDASKYFRMCLQS--GSDVCV 677 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeld--P~~~~A~~~LA~lyl~lGd---------~eeAl~~fekALel--~P~n~~ 677 (1166)
+...-..+.+.|++++|+..|++..+.. | +...|..+-.++...+. ++.|.+.|++.... .|+..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~- 106 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA- 106 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH-
Confidence 4444567789999999999999998753 4 45566666566654443 68899999887764 45411
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHccCHHHHHHHHH
Q 039706 678 DQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS-SYSEKLLEMKAEALFMLRKYEEVIQLCE 756 (1166)
Q Consensus 678 a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~-P~~~~al~~lA~~y~~lGdyeeAi~~le 756 (1166)
.+..+...+ ...|++++|+.+|++..... .-+...|..+-..|.+.|++++|.++++
T Consensus 107 --------------------tyn~lI~~~--~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 107 --------------------TFTNGARLA--VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp --------------------HHHHHHHHH--HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------HHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 111111221 24699999999999987753 2356678888899999999999999999
Q ss_pred HHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039706 757 QTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHE 818 (1166)
Q Consensus 757 kALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl 818 (1166)
+..+..-. +. ...|..+..+|...|+.++|.++|++..
T Consensus 165 ~M~~~G~~---------------Pd---------~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 165 HMVESEVV---------------PE---------EPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHTTCC---------------CC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCC---------------CC---------HHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 98764211 11 1124567788999999999999999853
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.66 E-value=0.0059 Score=62.21 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=77.7
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccC-----CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC------
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES-----HPFAAICFCNRAAAYKALRHITDAIADCNLAIALD------ 907 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~-----~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld------ 907 (1166)
.+.++.....++..+.|+.|+-.+..++.+...+ ....+.++..+|.+++..++|..|+..|++||.+.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566778899999999999999988775211 11345688899999999999999999999998652
Q ss_pred C-------------------ChHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 039706 908 G-------------------NYLKAISRRATLYEMIRDYDHAASDFHR 936 (1166)
Q Consensus 908 P-------------------~~~~A~~~LA~ay~~lGdyeeAi~~yek 936 (1166)
+ ...+..+.+|.||.+++++.+|+..++.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1 1236889999999999999999998764
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.63 E-value=0.09 Score=61.10 Aligned_cols=208 Identities=13% Similarity=0.045 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 039706 643 RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVID 722 (1166)
Q Consensus 643 ~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~le 722 (1166)
.+.+.||.+|...|++++-...+......-+..+.+ +..+.+..+...+.. ..+..+.-++...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka---------------k~~k~v~~l~~~~~~-~~~~~~~~~~~~~ 83 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA---------------KAAKLVRSLVDMFLD-MDAGTGIEVQLCK 83 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH---------------HHHHHHHHHHHHHTT-SCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH---------------HHHHHHHHHHHHHhc-CCCcHHHHHHHHH
Confidence 456788899999999888888877654332211110 011111112112111 1233333344444
Q ss_pred HHHHhCCCh----HH--HHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHH
Q 039706 723 EALFISSYS----EK--LLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCL 796 (1166)
Q Consensus 723 kALel~P~~----~~--al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~l 796 (1166)
++++..-.. .. +-..+|.+|+..|+|.+|+..+.++++..... |.. ...+..+.+
T Consensus 84 ~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-------------dd~------~~llev~ll 144 (394)
T 3txn_A 84 DCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-------------DDK------NLLVEVQLL 144 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-------------SCT------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-------------ccc------hhHHHHHHH
Confidence 444332211 11 23478999999999999999999998765432 111 122334556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccch-HHHHHHhhhhHHHH-HcCChHHHHHHHHHHHhccc-cCC
Q 039706 797 IFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTV-RELLCRKSAGNEAF-QAGRHSEAVEHYTAALSCTV-ESH 873 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~-~~a~~l~~lG~~~~-~~G~yeEAie~y~kALel~~-e~~ 873 (1166)
-..+|..++++.++..+|.++... ...+...+ -.+.....-|..++ ..++|.+|..+|-+++.-.. ...
T Consensus 145 e~~~~~~~~n~~k~k~~l~~a~~~--------~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~ 216 (394)
T 3txn_A 145 ESKTYHALSNLPKARAALTSARTT--------ANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDS 216 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------HHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhh--------hccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccccc
Confidence 778899999999999999987331 11111111 22333444588888 89999999999999875321 111
Q ss_pred chhHHHHHHHHHHHHHhhch
Q 039706 874 PFAAICFCNRAAAYKALRHI 893 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~ 893 (1166)
|....+...++.|-+..++.
T Consensus 217 ~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 217 VKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHcCCH
Confidence 32233444456666655553
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.54 E-value=0.0077 Score=61.36 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAID---PDF------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVD 678 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeld---P~~------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a 678 (1166)
-|+++.....++..+.|+.|+.....++.+. |+. .++++.+|.+++..++|..|...|++||++...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~---- 95 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA---- 95 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH----
Confidence 3778888999999999999999999877764 332 458899999999999999999999999874211
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 679 QKIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 679 ~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
+.+...... ... ....+.. ...+ +...++.+.+|.||..++++++|+..++.+
T Consensus 96 ----------l~k~~s~~~-------~~~--~~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 96 ----------LSKTSKVRP-------STG--NSASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------C------------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ----------HhcCCCccc-------ccc--ccCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 000000000 000 0000000 0111 446789999999999999999999997643
No 261
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.31 E-value=0.016 Score=56.58 Aligned_cols=74 Identities=18% Similarity=0.003 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCChHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 608 KWRLSNRAATRMALGRMRD---ALSDCMLAVAID-P-DFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~e---AI~~fekALeld-P-~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
..+-++.|.++....+... +|..++..+..+ | ..-+.++.||..++++|+|++|+.+++.+|+..|++..+..+
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3556778889988887666 999999999877 5 567899999999999999999999999999999997654433
No 262
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.04 E-value=0.047 Score=54.69 Aligned_cols=115 Identities=7% Similarity=-0.127 Sum_probs=89.7
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhh
Q 039706 636 AIDPDFLRVQVRAANCHLALGEI------EDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKVSECMQRSAQLLQNK 709 (1166)
Q Consensus 636 eldP~~~~A~~~LA~lyl~lGd~------eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~ 709 (1166)
-+.|++++.|......+...|+. +.-+..|++|+..-|-.. ..........+..+....
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k------------~~~wrrYI~LWIrYA~~~--- 71 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK------------YGQNESFARIQVRFAELK--- 71 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG------------GTTCHHHHHHHHHHHHHH---
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc------------cccHHHHHHHHHHHHHHH---
Confidence 46899999999999999999999 899999999998766521 111222223333333332
Q ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 710 TSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 710 ~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
..++.+.|.+.|+.++.+....+.+|...|..-.++|+...|...+.+++.+.|..
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 24789999999999999888889999999999999999999999999999988753
No 263
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.89 E-value=0.0014 Score=61.94 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=33.0
Q ss_pred CCceEEeeeeeeecccccccceeeceeeeee-eecceee
Q 039706 1119 GDIYSISFNLRIASNKRCYRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1119 G~~~~~~~~lsf~ea~~G~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
|.+..+.+.|+|+|+++|+++.|.+.+.+.| +|+|+|-
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~ 39 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGN 39 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCcc
Confidence 4677888999999999999999999988888 8877663
No 264
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.79 E-value=0.063 Score=53.79 Aligned_cols=105 Identities=12% Similarity=-0.035 Sum_probs=81.7
Q ss_pred HHhhhhHHHHHcCCh------HHHHHHHHHHHhcccc----CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh
Q 039706 841 CRKSAGNEAFQAGRH------SEAVEHYTAALSCTVE----SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY 910 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~y------eEAie~y~kALel~~e----~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~ 910 (1166)
.|......+.+.|+. ++-++.|++|+..-|. .......+|...|.. ..+++.++|.+.|+.|+.+....
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkF 93 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKF 93 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTB
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHH
Confidence 333334444455666 7778899999886532 122345566666644 67899999999999999998889
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 911 LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 911 ~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+..|...|.--..+|+...|...+.+|+.+.|+..+
T Consensus 94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 999999999999999999999999999998877644
No 265
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.74 E-value=0.3 Score=60.69 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=58.6
Q ss_pred HHHHcCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 617 TRMALGRMRDALS-DCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 617 ayl~lG~y~eAI~-~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
..+..+++++|.. .+.. -| +...+..++..+...|.+++|++..+. |.
T Consensus 608 ~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~~--------------------- 656 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISPD-----QD--------------------- 656 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-----HH---------------------
T ss_pred HHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCCC-----cc---------------------
Confidence 3456788888866 3310 11 011225666777778888877765421 00
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
..+..+ ...|+++.|++.... ..+...|..+|..++..++++.|+.+|.++
T Consensus 657 ----~~f~~~---l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 657 ----QKFELA---LKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp ----HHHHHH---HHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----hheehh---hhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 001111 125777777765432 355678888888888888888888887765
No 266
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.67 E-value=2.2 Score=50.16 Aligned_cols=204 Identities=9% Similarity=0.001 Sum_probs=118.9
Q ss_pred CChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 622 GRMRDALSDCMLAVAI------DPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 622 G~y~eAI~~fekALel------dP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
+++++|++.+...-+. -+...++...+..++...++++...+++....+....... + +
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~-------a---------i 93 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL-------S---------I 93 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH-------H---------H
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH-------H---------H
Confidence 6677888766443322 1345788888999999999999888877654433221100 0 0
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCC-------ChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCC
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISS-------YSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPP 768 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P-------~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a 768 (1166)
......+..++......+.+.-+..++..-.... ....+...+|.+|...|+|.+|...+.....-.-..
T Consensus 94 ~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--- 170 (445)
T 4b4t_P 94 QYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--- 170 (445)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS---
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---
Confidence 1111111112211111122222222211111111 123566789999999999999999998876432111
Q ss_pred ccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhcc-chHHHHHHhhhhH
Q 039706 769 LDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAG-TVRELLCRKSAGN 847 (1166)
Q Consensus 769 ~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~-~~~~a~~l~~lG~ 847 (1166)
+.. ..++..+....++|+..+++.+|...+.++.. ....... ..-.+..+...|.
T Consensus 171 ----------~~~------~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~--------~~~~~~~~~~lk~~~~~~~~~ 226 (445)
T 4b4t_P 171 ----------MEM------SEKIQFILEQMELSILKGDYSQATVLSRKILK--------KTFKNPKYESLKLEYYNLLVK 226 (445)
T ss_dssp ----------SCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HHHHSSCCHHHHHHHHHHHHH
T ss_pred ----------ccH------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------hhcccCCcHHHHHHHHHHHHH
Confidence 111 11233345677889999999999999998621 0111111 1223455666789
Q ss_pred HHHHcCChHHHHHHHHHHHhc
Q 039706 848 EAFQAGRHSEAVEHYTAALSC 868 (1166)
Q Consensus 848 ~~~~~G~yeEAie~y~kALel 868 (1166)
.+...++|.+|..+|.+++..
T Consensus 227 ~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 227 ISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhc
Confidence 999999999999999999864
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.45 E-value=0.088 Score=51.66 Aligned_cols=72 Identities=11% Similarity=-0.099 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHH
Q 039706 611 LSNRAATRMALGR---MRDALSDCMLAVAIDPD-FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIA 682 (1166)
Q Consensus 611 y~nrA~ayl~lG~---y~eAI~~fekALeldP~-~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l 682 (1166)
-++.|.++.+-.+ ..++|..++..++.+|. .-+.++.+|..++++|+|++|+.+.+.+|+..|++..+..+.
T Consensus 43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 4677888887764 45799999999999985 478999999999999999999999999999999986654443
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.38 E-value=0.19 Score=55.05 Aligned_cols=131 Identities=13% Similarity=0.101 Sum_probs=88.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhhHHhH
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQKAQKV 695 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~k~~~~ 695 (1166)
..+++.|..++|+..+...|+.+|.+......+..+|.-.|+++.|.+-++.+.+++|+....-. .+..+-..+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~----~yr~lI~aE~~ 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS----QLRHLVKAAQA 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH----HHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHH----HHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999998432111 11111111000
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCC
Q 039706 696 SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSP 767 (1166)
Q Consensus 696 ~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~ 767 (1166)
-...+. -+... .+-..|.........|......|+.++|...-.++++..|....
T Consensus 81 ------R~~vfa---G~~~P--------~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 81 ------RKDFAQ---GAATA--------KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ------HHHHTT---SCCCE--------ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ------HHHHHc---CCCCC--------CCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 000000 00000 00001222233445566677789999999999999999876544
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.21 E-value=0.12 Score=50.83 Aligned_cols=80 Identities=9% Similarity=-0.020 Sum_probs=62.0
Q ss_pred HHHHhhhhHHHHHcCCh---HHHHHHHHHHHhccccCCc-hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHH
Q 039706 839 LLCRKSAGNEAFQAGRH---SEAVEHYTAALSCTVESHP-FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAI 914 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~y---eEAie~y~kALel~~e~~p-~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~ 914 (1166)
....++.|+.+.+..+. .++|..++..+... | ..-.+++.+|..+.++|+|.+|+.+++.+|++.|++..|.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~----~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 34455667777777654 46888888888755 4 4678899999999999999999999999999999998887
Q ss_pred HHHHHHHH
Q 039706 915 SRRATLYE 922 (1166)
Q Consensus 915 ~~LA~ay~ 922 (1166)
..+..+-.
T Consensus 116 ~Lk~~Ie~ 123 (134)
T 3o48_A 116 ALKSMVED 123 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.07 E-value=0.16 Score=50.38 Aligned_cols=72 Identities=11% Similarity=-0.123 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHH
Q 039706 609 WRLSNRAATRMALGR---MRDALSDCMLAVAIDPD-FLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQK 680 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~---y~eAI~~fekALeldP~-~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~ 680 (1166)
..-|+.|.++..-.+ ..++|..++..+...|. .-+.++.||..++++|+|++|+.+.+.+|+..|++..+..
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 334778888888765 45799999999999985 4678999999999999999999999999999999755443
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.90 E-value=0.14 Score=50.76 Aligned_cols=79 Identities=9% Similarity=-0.025 Sum_probs=58.3
Q ss_pred HHHHhhhhHHHHHcCCh---HHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRH---SEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAIS 915 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~y---eEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~ 915 (1166)
....++.|+.+.+..+- .++|.+++..+...+ ...-.++|.+|..++++|+|.+|..+++..|++.|++..|..
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~---~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC---STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34445567777776654 468888888887541 246678888999999999999999999999999998877766
Q ss_pred HHHHH
Q 039706 916 RRATL 920 (1166)
Q Consensus 916 ~LA~a 920 (1166)
.+..+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.84 E-value=0.74 Score=53.42 Aligned_cols=124 Identities=13% Similarity=-0.008 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc--C
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE--S 872 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e--~ 872 (1166)
..+|..|+..|+|.+|+..+.+... .+..+......++.+.....+|...+++.++...|++|...... .
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~--------~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLR--------ELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--------HHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH--------HHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 4689999999999999999988633 22222233445667777788999999999999999999876421 1
Q ss_pred Cc-hhHHHHHHHHHHHH-HhhchhHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHhhC
Q 039706 873 HP-FAAICFCNRAAAYK-ALRHITDAIADCNLAIALD-----GNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 873 ~p-~~a~a~~nlA~ay~-~lGq~eeAi~~lekALeld-----P~~~~A~~~LA~ay~~lGd 926 (1166)
+| ..+.+...-|..++ ..++|.+|..+|-.++.-. |....++..++.+-+..++
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 22 34666777888899 8999999999999987543 2223344445555555555
No 273
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.71 E-value=0.17 Score=58.65 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=83.4
Q ss_pred HHHhhhhHHHHHcCChHHHHHHHHHHHhccccC-------Cc-----------hhHHHHHHHHHHHHHhhchhHHHHHHH
Q 039706 840 LCRKSAGNEAFQAGRHSEAVEHYTAALSCTVES-------HP-----------FAAICFCNRAAAYKALRHITDAIADCN 901 (1166)
Q Consensus 840 ~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~-------~p-----------~~a~a~~nlA~ay~~lGq~eeAi~~le 901 (1166)
..+...|......++.++|+..|.+|+.+.... .+ ....+...++.++..+|++.+|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444555666789999999999999875210 00 011233456777889999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 902 LAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 902 kALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
.++..+|-+-.+|..+-.+|...|+..+|+..|+++.+..-+.+.
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG 240 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG 240 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999887655543
No 274
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.48 E-value=0.5 Score=58.69 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYF 665 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~f 665 (1166)
+...+..+...|.+++|+...+ .... ...+++.+|++++|.+..
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~--------~~~~---~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISP--------DQDQ---KFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCC--------CHHH---HHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHheecCC--------Ccch---heehhhhcCCHHHHHHHH
Confidence 3444455556666666665442 1111 123345566666666654
No 275
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.18 E-value=0.23 Score=62.27 Aligned_cols=61 Identities=10% Similarity=-0.018 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 039706 877 AICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRL 937 (1166)
Q Consensus 877 a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekA 937 (1166)
..++...+..+...|+|+-|+...++|+.+.|.....|+.|+.+|..+|+|+.|+-.+.-+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4466667888889999999999999999999999999999999999999999999876654
No 276
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.92 Score=53.48 Aligned_cols=103 Identities=10% Similarity=-0.064 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcc-c--c
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCT-V--E 871 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~-~--e 871 (1166)
..|+.+|...|++.+|...+..... ...........+..+......++..++|..|...++++.... . .
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~--------Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQV--------ETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--------HHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--------HHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 4567777777777777777776421 111122333445566666777777777777777777764211 1 1
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIA 905 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALe 905 (1166)
........+...|..+...++|.+|-.+|..++.
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1112344555666677777777777777766654
No 277
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.84 E-value=3 Score=42.48 Aligned_cols=200 Identities=13% Similarity=0.048 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhh
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFR 790 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~ 790 (1166)
-.+|+.++-.-.- +.|..++..+.++..++-.|.|..|+-.+... | .. ..
T Consensus 15 Y~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~l------N----------------T~-Ts---- 64 (242)
T 3kae_A 15 YRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHKL------N----------------TC-TS---- 64 (242)
T ss_dssp TTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHTC------C----------------BH-HH----
T ss_pred cccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHhc------c----------------hH-HH----
Confidence 4677766543322 34555577888999999999999988765321 1 01 11
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhc----CCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHH
Q 039706 791 LWRCCLIFKSYFTLGRLEEAIAALERHES----GNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAAL 866 (1166)
Q Consensus 791 ~wr~~lLA~ay~~lGd~eeAl~~lekAl~----~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kAL 866 (1166)
.+.-+.+|..+.++..|+..++..+. .+|+..+....-+......-..+..+|..+.+.|+-+|||.+|....
T Consensus 65 ---~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 65 ---KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 23356789999999999999999874 23332222222222223334455667999999999999999999988
Q ss_pred hccccCCchhHHHHHH-------------HHHHHHHhhchhHHHH--------HHHHHHHhCCChHHHH-HHHHHHHHHh
Q 039706 867 SCTVESHPFAAICFCN-------------RAAAYKALRHITDAIA--------DCNLAIALDGNYLKAI-SRRATLYEMI 924 (1166)
Q Consensus 867 el~~e~~p~~a~a~~n-------------lA~ay~~lGq~eeAi~--------~lekALeldP~~~~A~-~~LA~ay~~l 924 (1166)
...+-..+..-.+|-| ++.--.+...+..... ..++-...-|.....+ ...|.-|..+
T Consensus 142 ~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~l 221 (242)
T 3kae_A 142 GKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNL 221 (242)
T ss_dssp HHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHT
T ss_pred CCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhc
Confidence 7662111111111111 0000000011111111 1112222234443322 3456778899
Q ss_pred hCHHHHHHHHHHHHHHhhh
Q 039706 925 RDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 925 GdyeeAi~~yekALeL~P~ 943 (1166)
|..++....|...-..+|.
T Consensus 222 g~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 222 GMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp TCHHHHHHHHHHHHHHSTT
T ss_pred ccchhHHHHHHHHHhcCCC
Confidence 9999999999998888775
No 278
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.67 E-value=0.85 Score=52.70 Aligned_cols=113 Identities=16% Similarity=0.154 Sum_probs=75.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH---HHHHH-HHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHH
Q 039706 645 QVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ---KIAVE-ASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGV 720 (1166)
Q Consensus 645 ~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~---~~l~E-a~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~ 720 (1166)
+...|......|+.+.|...+.+|+.+.......- ..+.. ....+... ...+....... ....|++.+|+..
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~--~~~a~~~~~~~--~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVED--KVLAHTAKAEA--EIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHH--HHHHHHHHHHH--HHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHH--HHHHHHHHHHH--HHHCCCHHHHHHH
Confidence 34445555567899999999999999754321110 00111 11111111 01111111111 2348999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 721 IDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 721 lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
+..++..+|.+..++..+..+|...|+..+|+..|+++...
T Consensus 194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887653
No 279
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.24 E-value=3.4 Score=54.41 Aligned_cols=54 Identities=9% Similarity=-0.052 Sum_probs=42.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 613 NRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 613 nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
.+...++..+.++-|.. .+...|.++...+.+|.+|+..|++++|..+|+++-.
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 35556777788876644 4566788888889999999999999999999998753
No 280
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.26 E-value=6.1 Score=40.60 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=41.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 616 ATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668 (1166)
Q Consensus 616 ~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekA 668 (1166)
...+..|+++.|.+.++.. +....|.++|...+..|+++-|..+|+++
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3456789999999988765 67789999999999999999999999875
No 281
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.45 E-value=11 Score=38.55 Aligned_cols=153 Identities=8% Similarity=-0.017 Sum_probs=93.1
Q ss_pred hchHHHHHHHHHHHHHcCChHHHHHHHHHHHH--h---------------CCCCHH-HHHHHHHHHHHcCChHHHHHHHH
Q 039706 605 ACEKWRLSNRAATRMALGRMRDALSDCMLAVA--I---------------DPDFLR-VQVRAANCHLALGEIEDASKYFR 666 (1166)
Q Consensus 605 ~~e~~ay~nrA~ayl~lG~y~eAI~~fekALe--l---------------dP~~~~-A~~~LA~lyl~lGd~eeAl~~fe 666 (1166)
..-..+.|..+.||..+.+|..|+..++..|+ . ||.+-+ .+..+|.++.+.|+.++|+.+|.
T Consensus 59 lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 59 LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 33345567789999999999999999999983 2 244444 45788999999999999999999
Q ss_pred HHHHcCCCchhHHHHHHHHHH-HhhhHHhH---------HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHH-
Q 039706 667 MCLQSGSDVCVDQKIAVEASD-GLQKAQKV---------SECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLL- 735 (1166)
Q Consensus 667 kALel~P~n~~a~~~l~Ea~~-~L~k~~~~---------~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al- 735 (1166)
......|-.+....++.+-.. .-...+.+ .+.+.....+... ..+ ..+++-...-|.-....
T Consensus 139 ~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~--~s~-----~~ikkY~n~iPGiGSY~v 211 (242)
T 3kae_A 139 RSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHES--LSP-----SLVKKYMEHVPGIGSYFI 211 (242)
T ss_dssp HHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHH--CCH-----HHHHHHHTSTTTHHHHHH
T ss_pred hhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHh--ccH-----HHHHHHHHhCCCchhHHH
Confidence 999888764332222211000 00000000 0001100000000 000 22233333446554433
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhccC
Q 039706 736 EMKAEALFMLRKYEEVIQLCEQTFHFAEK 764 (1166)
Q Consensus 736 ~~lA~~y~~lGdyeeAi~~lekALel~p~ 764 (1166)
...|..|+.+|-.++...+|..+-..+|.
T Consensus 212 a~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 212 SNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 45678899999999999999999888874
No 282
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.41 E-value=23 Score=43.30 Aligned_cols=71 Identities=13% Similarity=0.008 Sum_probs=45.7
Q ss_pred HHHHHHHHhchHHHHH----HHHHHHH-HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 039706 597 AETIAAQEACEKWRLS----NRAATRM-ALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQS 671 (1166)
Q Consensus 597 a~~~aAIe~~e~~ay~----nrA~ayl-~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel 671 (1166)
..+...|...+.|... ++...++ ..+++..-+..+.. .|......+..+.++...|+-.+|.....++-..
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 3555555555554432 2232222 35677766665543 3788888899999999999988888877766553
No 283
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.30 E-value=0.42 Score=59.86 Aligned_cols=61 Identities=18% Similarity=0.089 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMC 668 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekA 668 (1166)
...+...|..++..|+|+-|+.+.++|+..-|.....|+.||.||..+|+|+.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3456778999999999999999999999999999999999999999999999999887765
No 284
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.17 E-value=1.8 Score=47.45 Aligned_cols=57 Identities=18% Similarity=0.111 Sum_probs=53.5
Q ss_pred hcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCC
Q 039706 709 KTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKN 765 (1166)
Q Consensus 709 ~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n 765 (1166)
...+..++|++.+...++..|.+...+..+.++|+-.|+|+.|...++.+.+++|..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 357999999999999999999999999999999999999999999999999998853
No 285
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=88.62 E-value=7 Score=46.66 Aligned_cols=78 Identities=12% Similarity=-0.073 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASD 687 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~ 687 (1166)
.+..+|........+..|..+|.+|+.+.|++..+|.+||.++...|+.-+|+-+|.+++......+.++..+..+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 366789998889999999999999999999999999999999999999999999999999865555555555544443
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.69 E-value=2.8 Score=50.05 Aligned_cols=195 Identities=13% Similarity=0.012 Sum_probs=81.2
Q ss_pred cCCCHHHHHHHHHHHH-----------HhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCccccc
Q 039706 710 TSNDAEIALGVIDEAL-----------FISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMEL 778 (1166)
Q Consensus 710 ~~gd~eeALe~lekAL-----------el~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~l 778 (1166)
..+++++|..+-..++ .+++-...+|+.++.++..+|+....+........+.+....+ .+...++.
T Consensus 148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~--~rta~lr~ 225 (523)
T 4b4t_S 148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKF--LKIASLKH 225 (523)
T ss_dssp -------------------------------------------------------CHHHHHHHHTHHHHH--HHHCCSCS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHH--HHHHhccc
Confidence 4567777776655443 1234456777777777877777665433222222211110000 00111222
Q ss_pred CccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHH
Q 039706 779 DSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEA 858 (1166)
Q Consensus 779 d~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEA 858 (1166)
|....+ -.+.++-+.|...+.+++|..+..++..... ...+...+..++.+|.++.-.++|.+|
T Consensus 226 D~~~qa-------~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~---------~~sn~q~~rY~YY~GRI~a~q~~Y~eA 289 (523)
T 4b4t_S 226 DNETKA-------MLINLILRDFLNNGEVDSASDFISKLEYPHT---------DVSSSLEARYFFYLSKINAIQLDYSTA 289 (523)
T ss_dssp SSCHHH-------HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTT---------TSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcchhH-------HHHHHHHHHHHccCcHHHHHHHHhcCcCCcc---------cCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 322111 1235577889999999999999999732211 112234466677789999999999999
Q ss_pred HHHHHHHHhccccCCc---hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHhhCHHH
Q 039706 859 VEHYTAALSCTVESHP---FAAICFCNRAAAYKALRHITDAIADCNLAIALDGNY---LKAISRRATLYEMIRDYDH 929 (1166)
Q Consensus 859 ie~y~kALel~~e~~p---~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~---~~A~~~LA~ay~~lGdyee 929 (1166)
.+++..|+...+.... ....++-.+-.+-+-+|++.+--- | ..+.. ...|..++.++ +.|+..+
T Consensus 290 ~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~l-f-----~q~~l~~~L~pY~~Lv~Av-r~GdL~~ 359 (523)
T 4b4t_S 290 NEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSF-F-----HQSNMQKSLLPYYHLTKAV-KLGDLKK 359 (523)
T ss_dssp HHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHH-H-----TTTSCHHHHHHHHHHHHHH-HHTCHHH
T ss_pred HHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHH-h-----hchhHHHHHHHHHHHHHHH-HcCCHHH
Confidence 9999999987642211 123343334444445677554111 1 12222 23467777775 5576543
No 287
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=86.20 E-value=36 Score=41.62 Aligned_cols=124 Identities=10% Similarity=-0.108 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Q 039706 611 LSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEASDGLQ 690 (1166)
Q Consensus 611 y~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea~~~L~ 690 (1166)
.+..|...+..|++..+...... +.-.|- ..|.....+...++.... ..+...|...|+.+....+-.
T Consensus 9 ~~~~a~~a~~~~~~~~~~~l~~~-l~~~pL--~~yl~y~~l~~~l~~~~~--~ev~~Fl~~~~~~p~~~~Lr~------- 76 (618)
T 1qsa_A 9 RYAQIKQAWDNRQMDVVEQMMPG-LKDYPL--YPYLEYRQITDDLMNQPA--VTVTNFVRANPTLPPARTLQS------- 76 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGG-GTTSTT--HHHHHHHHHHHTGGGCCH--HHHHHHHHHCTTCHHHHHHHH-------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-hcCCCc--HHHHHHHHHHhCcccCCH--HHHHHHHHHCCCChhHHHHHH-------
Confidence 45567778888888776655433 222333 344444444444432111 134444555666443222111
Q ss_pred hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Q 039706 691 KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFA 762 (1166)
Q Consensus 691 k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~ 762 (1166)
.....+. ..++|..-+..+.. .|.+.......+.++...|+-.+|......+....
T Consensus 77 ----------~~l~~l~--~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 77 ----------RFVNELA--RREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp ----------HHHHHHH--HTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred ----------HHHHHHH--hCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 1111111 25677776665543 37888889999999999999888888777766443
No 288
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=85.61 E-value=2 Score=51.37 Aligned_cols=80 Identities=16% Similarity=0.056 Sum_probs=71.7
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATL 920 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~a 920 (1166)
.+..+|++..-...+..|..+|.+|+.+. |.....|+.+|.+....|+.-+|+-+|-++|....-++.+..++..+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~----P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV----PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC----CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 45567999998999999999999999999 99999999999999999999999999999998877788888888888
Q ss_pred HHHh
Q 039706 921 YEMI 924 (1166)
Q Consensus 921 y~~l 924 (1166)
+...
T Consensus 230 f~~~ 233 (497)
T 1ya0_A 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 289
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.45 E-value=11 Score=42.26 Aligned_cols=27 Identities=7% Similarity=-0.299 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHhhCHHHHHHHHH
Q 039706 909 NYLKAISRRATLYEMIRDYDHAASDFH 935 (1166)
Q Consensus 909 ~~~~A~~~LA~ay~~lGdyeeAi~~ye 935 (1166)
.++..+..+|..|...+++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 467888888999988888888888774
No 290
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=85.32 E-value=8.8 Score=39.43 Aligned_cols=43 Identities=7% Similarity=-0.032 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 039706 711 SNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQT 758 (1166)
Q Consensus 711 ~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekA 758 (1166)
.|+++.|++..+.+ ++...|..+|...+..|+++-|+.+|+++
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 56677776665543 45566777777777777777777776654
No 291
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.27 E-value=2.2 Score=49.83 Aligned_cols=99 Identities=11% Similarity=-0.042 Sum_probs=77.5
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCC--Ch----HHHH
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALDG--NY----LKAI 914 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP--~~----~~A~ 914 (1166)
.+..+|..|+..|++++|+++|.++...... ......++..+..++...++|..|..++.++..+.. .+ ....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556799999999999999999999875422 244567888888899999999999999999976631 12 2334
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
...|.++...++|.+|...|-.++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 45677788899999999999887654
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.50 E-value=1.8 Score=51.67 Aligned_cols=139 Identities=8% Similarity=-0.029 Sum_probs=51.9
Q ss_pred HHHHcCChHHHHHHHHHHH-----------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHHHHHH
Q 039706 617 TRMALGRMRDALSDCMLAV-----------AIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKIAVEA 685 (1166)
Q Consensus 617 ayl~lG~y~eAI~~fekAL-----------eldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~l~Ea 685 (1166)
.++..++|++|..+...++ .+|+-.+++|+..+.++..+|+.............+.|. +..+
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~-------Ll~~ 217 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRST-------MMKF 217 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTH-------HHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHH-------HHHH
Confidence 4556788999988877665 135566788998888888888877654332222221111 0000
Q ss_pred HH--Hhh-hHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCCh-------HHHHHHHHHHHHHccCHHHHHHHH
Q 039706 686 SD--GLQ-KAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYS-------EKLLEMKAEALFMLRKYEEVIQLC 755 (1166)
Q Consensus 686 ~~--~L~-k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~-------~~al~~lA~~y~~lGdyeeAi~~l 755 (1166)
+. .+. ........+..+.+.+ ...+.|++|..++.++. .|.. ..+++.+|.++...++|.+|.+++
T Consensus 218 ~rta~lr~D~~~qa~l~nllLRnY--L~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L 293 (523)
T 4b4t_S 218 LKIASLKHDNETKAMLINLILRDF--LNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYI 293 (523)
T ss_dssp HHHCCSCSSSCHHHHHHHHHHHHH--HHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcccCcchhHHHHHHHHHHH--HccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 00 000 0000112223322222 23688999999999884 3321 466788999999999999999999
Q ss_pred HHHHHhccCCC
Q 039706 756 EQTFHFAEKNS 766 (1166)
Q Consensus 756 ekALel~p~n~ 766 (1166)
..|+...|...
T Consensus 294 ~~A~rkap~~~ 304 (523)
T 4b4t_S 294 IAAIRKAPHNS 304 (523)
T ss_dssp HHHTSSCSCSS
T ss_pred HHHHHhCCcch
Confidence 99998887654
No 293
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.94 E-value=20 Score=40.52 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHHHhhCHHHHHHHH
Q 039706 908 GNYLKAISRRATLYEMIRDYDHAASDF 934 (1166)
Q Consensus 908 P~~~~A~~~LA~ay~~lGdyeeAi~~y 934 (1166)
-.+++.+..+|.+|.+.+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 357888999999999999999998887
No 294
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.88 E-value=11 Score=49.62 Aligned_cols=132 Identities=8% Similarity=-0.092 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCC-CCch----hhhhhhh----ccchHHHHHHhhhhHHHHHcCChHHHHHHHHH
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGN-GGKM----LESLIPL----AGTVRELLCRKSAGNEAFQAGRHSEAVEHYTA 864 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~-~~k~----le~a~~L----~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~k 864 (1166)
.+.+|.+|+..|++++|..+|+++...- .... ......+ .........|......+.+.+.++.+++..+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3679999999999999999999963311 1100 0000000 00111233455566777888999999999999
Q ss_pred HHhccccCCch-hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhC
Q 039706 865 ALSCTVESHPF-AAICFCNRAAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRD 926 (1166)
Q Consensus 865 ALel~~e~~p~-~a~a~~nlA~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGd 926 (1166)
||+......+. ....|.++=..+..+++|++|...+...=. .......+..+-..+...+.
T Consensus 925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCC
T ss_pred HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCC
Confidence 99865332222 334788888899999999999877743321 11223444444444444444
No 295
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=79.62 E-value=9 Score=49.39 Aligned_cols=100 Identities=2% Similarity=-0.156 Sum_probs=78.0
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--CChHHHHHH
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD--GNYLKAISR 916 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--P~~~~A~~~ 916 (1166)
...+..+-+.|.+.|+.++|...|.+...........+...|+.+-..|.+.|++++|++.|++..+.. | +...|..
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence 345666778899999999999999776543111113467788889999999999999999999988753 5 5677888
Q ss_pred HHHHHHHhhCH-HHHHHHHHHHHH
Q 039706 917 RATLYEMIRDY-DHAASDFHRLIA 939 (1166)
Q Consensus 917 LA~ay~~lGdy-eeAi~~yekALe 939 (1166)
+-.++.+.|+. ++|...|++..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH
Confidence 88888888884 788888887764
No 296
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.08 E-value=7.8 Score=45.19 Aligned_cols=102 Identities=15% Similarity=-0.007 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhcccc--C
Q 039706 795 CLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVE--S 872 (1166)
Q Consensus 795 ~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e--~ 872 (1166)
..+|..|+..|++++|++.|.++.... .. ....+..+.....+++..++|..|..++.+|-.+... .
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~--------~~---~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d 203 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKA--------IS---TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD 203 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHH--------TC---CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc--------CC---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC
Confidence 458999999999999999999964311 11 1234556666778889999999999999999765421 1
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC
Q 039706 873 HPFAAICFCNRAAAYKALRHITDAIADCNLAIALD 907 (1166)
Q Consensus 873 ~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld 907 (1166)
......+....|..+...++|.+|..+|-.++.-.
T Consensus 204 ~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 204 WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 12233455666778888999999999998887654
No 297
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=75.44 E-value=80 Score=34.25 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CC-chhHHHHHHHHH
Q 039706 643 RVQVRAANCHLALGEIEDASKYFRMCLQSG--SD-VCVDQKIAVEAS 686 (1166)
Q Consensus 643 ~A~~~LA~lyl~lGd~eeAl~~fekALel~--P~-n~~a~~~l~Ea~ 686 (1166)
.-++.+|.+..+.++|++.+.+.+++.+.+ +. +...+.++.-++
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaY 55 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAY 55 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 456677888888899999999999988876 44 233344444443
No 298
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=74.20 E-value=77 Score=33.84 Aligned_cols=44 Identities=7% Similarity=0.011 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-hhHHHHHHHHH
Q 039706 643 RVQVRAANCHLALGEIEDASKYFRMCLQSGSDV-CVDQKIAVEAS 686 (1166)
Q Consensus 643 ~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n-~~a~~~l~Ea~ 686 (1166)
.-++.+|.+..+.++|++.+.+.+++.+.++.- ...+.++.-++
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvay 50 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 50 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 456678888889999999999999998876652 33344444443
No 299
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=72.36 E-value=66 Score=36.02 Aligned_cols=147 Identities=11% Similarity=0.099 Sum_probs=81.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcC-----------------------CC--Cchhh-------------hhhhhccchHH
Q 039706 797 IFKSYFTLGRLEEAIAALERHESG-----------------------NG--GKMLE-------------SLIPLAGTVRE 838 (1166)
Q Consensus 797 LA~ay~~lGd~eeAl~~lekAl~~-----------------------~~--~k~le-------------~a~~L~~~~~~ 838 (1166)
++--+...|.|+.|+.++.+.+-. .+ -..+. ...+.......
T Consensus 34 laadhvAAGsFetAm~lLnrQvGivnf~PLk~~F~~~y~~s~~~l~~~~~~lp~l~~~~~r~~~e~~~~~~lP~i~~l~~ 113 (325)
T 3mv2_A 34 LPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSEDQILPYVPGLDV 113 (325)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHHCBCCCGGGHHHHHHHHHHTEEEECCSSTTSCCEEEECBSSCSSSCGGGCCBCCCCHHH
T ss_pred cHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhcccCCCCCCcchhhhcCCccccccccCCCCCCCHHH
Confidence 567788999999999999885320 00 00000 00111112334
Q ss_pred HHHHhhhhHHHHHcCChHHHHHHHHHHHhccc----cCCchhHHH--HHHHHHHH-----HHhhchhHHHHHHHHHHHh-
Q 039706 839 LLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV----ESHPFAAIC--FCNRAAAY-----KALRHITDAIADCNLAIAL- 906 (1166)
Q Consensus 839 a~~l~~lG~~~~~~G~yeEAie~y~kALel~~----e~~p~~a~a--~~nlA~ay-----~~lGq~eeAi~~lekALel- 906 (1166)
+...+..|..++..|++++|+..|+.+|..-+ ++......+ +..++.-| +++.+-+-+-+...+.+++
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA 193 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA 193 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 45566789999999999999999999986432 222222222 22222212 1221111000122333333
Q ss_pred --------CCChHHHHHHHHH-HHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 907 --------DGNYLKAISRRAT-LYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 907 --------dP~~~~A~~~LA~-ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
.|.+...-++.|. +.++.++|.-|...-++.|++.|.
T Consensus 194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3433333333333 456889999999999999988764
No 300
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=72.28 E-value=81 Score=35.24 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=61.2
Q ss_pred HHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccc----cCCchhHHH--H------HHHHHHHHHhhchhHH---HHHHH
Q 039706 837 RELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTV----ESHPFAAIC--F------CNRAAAYKALRHITDA---IADCN 901 (1166)
Q Consensus 837 ~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~----e~~p~~a~a--~------~nlA~ay~~lGq~eeA---i~~le 901 (1166)
..+...+..|..++..|++++|+..|+.+|..-+ ++......+ + |-+|... ++.+-+.. .+...
T Consensus 100 ~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~i-El~Rr~l~~~~~~~~k 178 (320)
T 3mkr_B 100 NDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSM-ETERKKLPKETLEQQK 178 (320)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTSCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCCchhHH
Confidence 3344566789999999999999999999987542 111111111 1 2222221 22221111 12334
Q ss_pred HHHHh---------CCChHHHHHHHHH-HHHHhhCHHHHHHHHHHHHHHhhh
Q 039706 902 LAIAL---------DGNYLKAISRRAT-LYEMIRDYDHAASDFHRLIALLTK 943 (1166)
Q Consensus 902 kALel---------dP~~~~A~~~LA~-ay~~lGdyeeAi~~yekALeL~P~ 943 (1166)
+.+++ .|.+...-++.|. +.++.++|.-|...-++.|++.|.
T Consensus 179 R~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 179 RICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 44443 3444333333333 456889999999999999988554
No 301
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=70.81 E-value=0.72 Score=56.68 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=35.5
Q ss_pred EEeeeeeeecccccccceeeceeeeee-eecceeeeeec---ccccc
Q 039706 1123 SISFNLRIASNKRCYRPFVTIREFMAC-ACQWRYQIVES---QTEDC 1165 (1166)
Q Consensus 1123 ~~~~~lsf~ea~~G~~K~i~~~~~~~C-~C~G~~q~~~~---~~~~c 1165 (1166)
.+.+.|+|+|+++|+++.+.+.....| +|+|+|-.--. .++.|
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC 214 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETC 214 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCS
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccC
Confidence 357789999999999999999999999 99998854322 45666
No 302
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=69.19 E-value=1.3e+02 Score=32.55 Aligned_cols=45 Identities=7% Similarity=-0.006 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-hhHHHHHHHHH
Q 039706 642 LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDV-CVDQKIAVEAS 686 (1166)
Q Consensus 642 ~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n-~~a~~~l~Ea~ 686 (1166)
-+-++.+|.+..+.++|++.+.+.+++.+.++.- ...+.++.-++
T Consensus 31 re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAY 76 (261)
T 3ubw_A 31 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 76 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 4567778889999999999999999988877652 23334443333
No 303
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=68.10 E-value=24 Score=45.67 Aligned_cols=100 Identities=10% Similarity=-0.078 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCchhhhhhhhccchHHHHHHhhhhHHHHHcCChHHHHHHHHHHHhccccCC
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGGKMLESLIPLAGTVRELLCRKSAGNEAFQAGRHSEAVEHYTAALSCTVESH 873 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~k~le~a~~L~~~~~~a~~l~~lG~~~~~~G~yeEAie~y~kALel~~e~~ 873 (1166)
+..+-..|...|+.++|...|....... ...-..++..|..+-..|.+.|++++|++.|.+..+.. -
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~----------~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G---~ 196 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQR----------QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG---L 196 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSH----------HHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHh----------hcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---C
Confidence 5567788999999999999997631100 00111245667778889999999999999999997643 2
Q ss_pred chhHHHHHHHHHHHHHhhch-hHHHHHHHHHHHh
Q 039706 874 PFAAICFCNRAAAYKALRHI-TDAIADCNLAIAL 906 (1166)
Q Consensus 874 p~~a~a~~nlA~ay~~lGq~-eeAi~~lekALel 906 (1166)
.-+...|..+-.++.+.|+. ++|...+++....
T Consensus 197 ~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 34567777787889999985 6888988887765
No 304
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=65.62 E-value=1.8e+02 Score=32.73 Aligned_cols=130 Identities=12% Similarity=-0.012 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCC--chhhhhhhh--ccchHHHHHHhhhh-HHHHHcCChHHHHHHHHHHHhc
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERHESGNGG--KMLESLIPL--AGTVRELLCRKSAG-NEAFQAGRHSEAVEHYTAALSC 868 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekAl~~~~~--k~le~a~~L--~~~~~~a~~l~~lG-~~~~~~G~yeEAie~y~kALel 868 (1166)
...+|..|+..+++.+|..+|-- -.++. ......... ...+..+..+...+ ..|...++...|...|...++.
T Consensus 139 H~~ig~~~~~e~~~~~Ae~H~il--g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 139 HHVVGTLYVEEGEFEAAEKHLVL--GTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT--SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHh--cCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34577778888888888777732 11111 000111111 01122333333233 3467788888887765554432
Q ss_pred c----cc-------C-------CchhHH-HHHHHHHHHHHhh---chhHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHhh
Q 039706 869 T----VE-------S-------HPFAAI-CFCNRAAAYKALR---HITDAIADCNLAIALDG-NYLKAISRRATLYEMIR 925 (1166)
Q Consensus 869 ~----~e-------~-------~p~~a~-a~~nlA~ay~~lG---q~eeAi~~lekALeldP-~~~~A~~~LA~ay~~lG 925 (1166)
. +. . -|..+. -+..+..+-++.+ -|..-.+.|...|..+| .+...+-.+|.+|+...
T Consensus 217 l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 217 LVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp HHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred HhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 1 11 0 011121 1122222222333 24455566666777777 77788888888887653
No 305
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=61.96 E-value=2 Score=37.77 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=10.1
Q ss_pred cccceeeceeeeee-eecceee
Q 039706 1136 CYRPFVTIREFMAC-ACQWRYQ 1156 (1166)
Q Consensus 1136 G~~K~i~~~~~~~C-~C~G~~q 1156 (1166)
|.++.|.+.....| +|+|+|.
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~ 22 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGA 22 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSB
T ss_pred CcEEEEEcccceECCCCccccc
Confidence 34444555545555 5554444
No 306
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=61.22 E-value=1.7e+02 Score=31.18 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=36.2
Q ss_pred HHHHHHHHHHc-----cC-----HHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHH-H
Q 039706 735 LEMKAEALFML-----RK-----YEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYF-T 803 (1166)
Q Consensus 735 l~~lA~~y~~l-----Gd-----yeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~-~ 803 (1166)
+.++|..|..+ |+ .+.|...|+.|+.+.....++ . ...++....+.+..|+ -
T Consensus 126 ~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~p------------t-----hPirLGLaLNfSVFyyEi 188 (236)
T 3iqu_A 126 LKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPP------------T-----NPIRLGLALNFSVFHYEI 188 (236)
T ss_dssp HHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCT------------T-----CHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCC------------C-----CcHHHHHHHHHHHHHHHH
Confidence 34566665443 32 356788888888765322111 0 1122222233333433 4
Q ss_pred cCCHHHHHHHHHHH
Q 039706 804 LGRLEEAIAALERH 817 (1166)
Q Consensus 804 lGd~eeAl~~lekA 817 (1166)
+++.++|....++|
T Consensus 189 ln~~~~Ac~lAk~A 202 (236)
T 3iqu_A 189 ANSPEEAISLAKTT 202 (236)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 79999999988876
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.59 E-value=75 Score=40.88 Aligned_cols=111 Identities=11% Similarity=-0.102 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCc-h-hHHHHHHHHHHH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ-SGSDV-C-VDQKIAVEASDG 688 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe-l~P~n-~-~a~~~l~Ea~~~ 688 (1166)
..+...++..+.++-|. ..+..-|.++-.-+.+|++|+..|++++|..+|++|-. +.... . ........+...
T Consensus 814 ~~l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 34566777888887553 34567788887889999999999999999999998763 21111 0 001111111111
Q ss_pred hhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 039706 689 LQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFIS 728 (1166)
Q Consensus 689 L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~ 728 (1166)
.........++.+...++. ..+.++.++...+.||...
T Consensus 890 ~e~~~~~~~YY~hV~~LFE--~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLF--EESAYIDALEFSLLADASK 927 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHTC
T ss_pred ccccchhHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhc
Confidence 1111112235555555554 4678888888888888654
No 308
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=56.81 E-value=2.2e+02 Score=30.85 Aligned_cols=46 Identities=7% Similarity=-0.157 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC-HHHHHHHHHHHHH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAID---PDF-LRVQVRAANCHLA 654 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeld---P~~-~~A~~~LA~lyl~ 654 (1166)
.-+..+|...-+.++|++.+.+.+++++.+ +.. .+=...+..+|-.
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKN 78 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKN 78 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 345567777778888888888888888876 433 4455556666543
No 309
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=55.42 E-value=2.5e+02 Score=31.13 Aligned_cols=26 Identities=12% Similarity=-0.146 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHHccCHHHHHHHH
Q 039706 730 YSEKLLEMKAEALFMLRKYEEVIQLC 755 (1166)
Q Consensus 730 ~~~~al~~lA~~y~~lGdyeeAi~~l 755 (1166)
.++.++..+|..|...+++.+|..+|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 46778888888888888888877766
No 310
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=52.74 E-value=2.3e+02 Score=34.88 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=20.4
Q ss_pred HHHHHHHH--HHhhCHHHHHHHHHHHHHHhhhh
Q 039706 914 ISRRATLY--EMIRDYDHAASDFHRLIALLTKQ 944 (1166)
Q Consensus 914 ~~~LA~ay--~~lGdyeeAi~~yekALeL~P~~ 944 (1166)
+..+..++ ...|+|++|+..+++ +.+.|-.
T Consensus 539 Ll~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 539 LLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 34444444 788999999998887 4466654
No 311
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=47.29 E-value=42 Score=30.66 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 911 LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 911 ~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
+..+-++|..+...|+|++|+.+.++|..+..+...
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 445666777788888888888888877776655544
No 312
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=43.60 E-value=3.2e+02 Score=28.93 Aligned_cols=53 Identities=8% Similarity=-0.106 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHHHhccc----cCCchhHHHHHHHHHHHH-HhhchhHHHHHHHHHHH
Q 039706 853 GRHSEAVEHYTAALSCTV----ESHPFAAICFCNRAAAYK-ALRHITDAIADCNLAIA 905 (1166)
Q Consensus 853 G~yeEAie~y~kALel~~----e~~p~~a~a~~nlA~ay~-~lGq~eeAi~~lekALe 905 (1166)
|+.+.|...|+.|+++.. ..+|....+..|.+..|+ -+++.++|.....+|+.
T Consensus 139 g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 139 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 346777778888776542 233444455556655544 56788899988888865
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.06 E-value=1.5e+02 Score=37.97 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 794 CCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 794 ~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
.+.+|++|...|++++|..+|++|
T Consensus 843 ~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 843 VYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467999999999999999999996
No 314
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=42.36 E-value=2.7e+02 Score=27.64 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 039706 698 CMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHF 761 (1166)
Q Consensus 698 ~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel 761 (1166)
+...+..++. .+|.-++--..+...+.-.+-++.+++.+|.+|.++|+..+|-+++.+|-+.
T Consensus 93 ~vd~ALd~lv--~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 93 HVNKALDILV--IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH--HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3444444443 3566666555666655656677999999999999999999999999988764
No 315
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=34.63 E-value=48 Score=40.82 Aligned_cols=51 Identities=24% Similarity=0.128 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 039706 608 KWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEI 658 (1166)
Q Consensus 608 ~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~ 658 (1166)
......+|...+..|+|.-|.+.++.++..+|++.+|...+|.+|.++|.-
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 355678899999999999999999999999999999999999999888743
No 316
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=33.66 E-value=1.9e+02 Score=28.63 Aligned_cols=54 Identities=6% Similarity=-0.153 Sum_probs=39.8
Q ss_pred HHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 887 YKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 887 y~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
+...|+-++--+.+...+.-.+-.+..++.+|.+|.++|+..+|...+.+|-+.
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 345566665555555555556667899999999999999999999999888753
No 317
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=32.81 E-value=9e+02 Score=30.99 Aligned_cols=163 Identities=10% Similarity=-0.037 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC---C---CH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAVAIDP---D---FL----RVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQ 679 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekALeldP---~---~~----~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~ 679 (1166)
+++-+|.++...+ .+++..+...|.-+. . .. .+-+.||.+|.-.++ +++...+..++.-+.. ...
T Consensus 415 AllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~--~~~ 489 (963)
T 4ady_A 415 SLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSA--TSG 489 (963)
T ss_dssp HHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCH--HHH
T ss_pred HHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCH--HHH
Confidence 3444555554444 467777777776432 0 11 244455555554443 4566666666653221 000
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 039706 680 KIAVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTF 759 (1166)
Q Consensus 680 ~~l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekAL 759 (1166)
........+.....++-+.....+..+.+-..+...-...+|..++..|+.+.+-..++.+.
T Consensus 490 ------------------~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 490 ------------------EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKML 551 (963)
T ss_dssp ------------------HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred ------------------HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Confidence 00111111111234554444444444444322222222344445556777776666655443
Q ss_pred HhccCCCCCccccCcccccCccchhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039706 760 HFAEKNSPPLDANGQSMELDSSESTKHVSFRLWRCCLIFKSYFTLGRLEEAIAALERHE 818 (1166)
Q Consensus 760 el~p~n~~a~~~~g~~l~ld~~~~~~~~~~~~wr~~lLA~ay~~lGd~eeAl~~lekAl 818 (1166)
.. .+ ...+......+|.+|...|+...-...+..+.
T Consensus 552 ~~-~d----------------------p~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 552 AS-DE----------------------SLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp HC-SC----------------------HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred hC-CC----------------------HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 32 10 12233333567888888999655555666653
No 318
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=31.68 E-value=3.3e+02 Score=31.82 Aligned_cols=62 Identities=8% Similarity=-0.114 Sum_probs=48.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCc
Q 039706 614 RAATRMALGRMRDALSDCMLAVAIDP----------DFLRVQVRAANCHLALGEIEDASKYFRMCLQS-GSDV 675 (1166)
Q Consensus 614 rA~ayl~lG~y~eAI~~fekALeldP----------~~~~A~~~LA~lyl~lGd~eeAl~~fekALel-~P~n 675 (1166)
+-.+|+++++..-|...++..-...+ .....++.+|++++..++|.+|.+++..|+.. .|..
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 55789999999988887765433222 12467899999999999999999999999998 6654
No 319
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=31.48 E-value=57 Score=29.76 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 039706 610 RLSNRAATRMALGRMRDALSDCMLAV 635 (1166)
Q Consensus 610 ay~nrA~ayl~lG~y~eAI~~fekAL 635 (1166)
.+..||..++..|+|++||.+.++|.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 35668888888888888888887764
No 320
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.45 E-value=2.6e+02 Score=29.08 Aligned_cols=68 Identities=6% Similarity=-0.096 Sum_probs=49.7
Q ss_pred CCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhC--CChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 872 SHPFAAICFCNRAAAYKALRHITDAIADCNLAIALD--GNYLKAISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 872 ~~p~~a~a~~nlA~ay~~lGq~eeAi~~lekALeld--P~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
+++....+|...+..+ ..+...++...|.-..... -..+..|...|..+...|++.+|...|+.+++.
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3455666666655544 1233557778777766543 566788888999999999999999999999964
No 321
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar protein; 2.41A {Geobacillus stearothermophilus}
Probab=30.21 E-value=3.4e+02 Score=30.91 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 911 LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 911 ~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
....+..+..+...|++++|...+..+-++.|+-.+
T Consensus 173 v~~~~~~~~~a~~~g~l~~a~~~l~~v~~~l~kv~d 208 (412)
T 2ra1_A 173 VAMKAREAQDAVKAGNLDKAKAALDQVNQYVSKVTD 208 (412)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhhhH
Confidence 344556677778888888888888888888887644
No 322
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.17 E-value=1.6e+02 Score=33.93 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=45.6
Q ss_pred HhhcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhh
Q 039706 707 QNKTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKH 786 (1166)
Q Consensus 707 ~~~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~ 786 (1166)
...-..+|..|+..+-.+-++.|..... .++.+|.+++......-. + .+
T Consensus 269 d~GhL~rYPmALgnLgDLEe~~pt~gr~---------------~~~~L~~~AI~sa~~~Y~-----------n-----~H 317 (550)
T 3u84_A 269 DLGHLERYPMALGNLADLEELEPTPGRP---------------DPLTLYHKGIASAKTYYR-----------D-----EH 317 (550)
T ss_dssp HTTTTTTCHHHHHHHHHHHHHSCCTTCC---------------CHHHHHHHHHHHHHHHST-----------T-----CC
T ss_pred hccchhhCchhhcchhhHhhcCCCCCCC---------------CHHHHHHHHHHHHHHHhc-----------c-----CC
Confidence 3334667888888887777777643100 144445555443322110 0 01
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 787 VSFRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 787 ~~~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
++.|..+|-.|++.+++.+|+..+..+
T Consensus 318 ----vYPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 318 ----IYPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp ----SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----ccceeecchhhhhcchHHHHHHHHHHH
Confidence 122566888999999999999999875
No 323
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=28.22 E-value=2.2e+02 Score=25.18 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
..+|.-+-..|+|++|+..|..+++.+-....
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie~l~~alk 54 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIEVLAQLVS 54 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 44455557789999999999999988766543
No 324
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=28.18 E-value=3.2e+02 Score=24.29 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=16.5
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
.+...|..+-..|+|++|+.+|..+|+
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555666777777777766664
No 325
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=26.86 E-value=6.1e+02 Score=27.14 Aligned_cols=44 Identities=9% Similarity=0.038 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCc-hhHHHHHHHHH
Q 039706 643 RVQVRAANCHLALGEIEDASKYFRMCLQSGSDV-CVDQKIAVEAS 686 (1166)
Q Consensus 643 ~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n-~~a~~~l~Ea~ 686 (1166)
.-++.+|.+..+.++|++...+.+++.+.++.- ...+.++.-++
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAY 49 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAY 49 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 346778899999999999999999998877652 23344443333
No 326
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=26.32 E-value=1.1e+02 Score=36.08 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIAL 940 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL 940 (1166)
.++.+|.++...++|.+|..++..|+..
T Consensus 222 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 222 YRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3444555555555555555555555544
No 327
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=26.00 E-value=0.0083 Score=70.46 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 606 CEKWRLSNRAATRMALGRMRDALSDCMLAVAIDPDFLRVQVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 606 ~e~~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~~A~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
..+..|+.+|.+++..++..+||..|-+| -||. .|...-.+..+.|.|++-+.+++.|.+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34455666777777777777777666443 2333 334444455566666666666665554
No 328
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.72 E-value=1.3e+02 Score=28.53 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHhhchhHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccCC---------Cc
Q 039706 884 AAAYKALRHITDAIADCNLAIALDGNYLKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQSG---------VS 954 (1166)
Q Consensus 884 A~ay~~lGq~eeAi~~lekALeldP~~~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~~---------~~ 954 (1166)
+.+-.-...|++|..+..+||.++.. |+.++|+.+|++.+......+.....-. ..
T Consensus 10 ~~l~~ik~~h~~AF~~Is~AL~~DE~---------------g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar 74 (116)
T 2dl1_A 10 AEIKIIREAYKKAFLFVNKGLNTDEL---------------GQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESAR 74 (116)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH---------------TCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc---------------CCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Q ss_pred hhhhhHHHHHHHHhhhhhhHHh
Q 039706 955 DRSINLANDLRQARMRLTAVEE 976 (1166)
Q Consensus 955 dr~~~i~~~Lr~Aq~~Lk~~e~ 976 (1166)
.....+...|..++.+|..++.
T Consensus 75 ~lq~KM~~nL~~v~~RL~~Le~ 96 (116)
T 2dl1_A 75 QMQQKMKETLQNVRTRLEILEK 96 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 329
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=25.19 E-value=7.6e+02 Score=27.67 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
+++..|......+++.+|+..|+.|.+...+..
T Consensus 254 A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~ 286 (363)
T 3rau_A 254 AHLHMGKQAEEQQKFGERVAYFQSALDKLNEAI 286 (363)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555666777777777777776654443
No 330
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.89 E-value=2.3e+02 Score=24.92 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
..+|.-+-..|+|++|+..|..+++.+-..+.
T Consensus 15 v~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk 46 (83)
T 2v6y_A 15 AILAVKADKEGKVEDAITYYKKAIEVLSQIIV 46 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 44445557789999999999999988766543
No 331
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=24.83 E-value=1e+02 Score=32.02 Aligned_cols=34 Identities=9% Similarity=-0.223 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q 039706 609 WRLSNRAATRMALGRMRDALSDCMLAVAIDPDFL 642 (1166)
Q Consensus 609 ~ay~nrA~ayl~lG~y~eAI~~fekALeldP~~~ 642 (1166)
.++|.+|..++..++|.+|...+..|+...|...
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 3467789999999999999999999999888654
No 332
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=24.82 E-value=2.3e+02 Score=32.17 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=44.3
Q ss_pred hcCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccCCCCCccccCcccccCccchhhhhh
Q 039706 709 KTSNDAEIALGVIDEALFISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTFHFAEKNSPPLDANGQSMELDSSESTKHVS 788 (1166)
Q Consensus 709 ~~~gd~eeALe~lekALel~P~~~~al~~lA~~y~~lGdyeeAi~~lekALel~p~n~~a~~~~g~~l~ld~~~~~~~~~ 788 (1166)
.-..+|..|+..+-.+-++.|.... ..++.+|.+++......-. + .+
T Consensus 249 GhL~rYPmALgnLgDLEe~~pt~gr---------------~~~l~L~~~AI~sa~~yY~-----------n-----~H-- 295 (472)
T 3re2_A 249 GHIKTYPMAIANLGDLEEISPTPGR---------------PPAEELFKEAITVAKREYS-----------D-----HH-- 295 (472)
T ss_dssp TTTTTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHST-----------T-----CC--
T ss_pred cchhhCchhhcchhhHHhcCCCCCC---------------CCHHHHHHHHHHHHHHHhc-----------c-----CC--
Confidence 3456778888777777777664311 1144455555544322110 0 01
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039706 789 FRLWRCCLIFKSYFTLGRLEEAIAALERH 817 (1166)
Q Consensus 789 ~~~wr~~lLA~ay~~lGd~eeAl~~lekA 817 (1166)
+..|..+|-.|++.+++.+|+..+..+
T Consensus 296 --vYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 296 --IYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp --SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --ccchhhhhhhhhhcchHHHHHHHHHHH
Confidence 122556888999999999999999875
No 333
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=24.73 E-value=2.9e+02 Score=24.56 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhH
Q 039706 914 ISRRATLYEMIRDYDHAASDFHRLIALLTKQI 945 (1166)
Q Consensus 914 ~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~ 945 (1166)
+...|.-+...|+|++|+..|..+++++-...
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34455566788999999999999998866554
No 334
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.40 E-value=2.1e+02 Score=25.86 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=8.0
Q ss_pred hHHHHHcCChHHHHHHHHHH
Q 039706 846 GNEAFQAGRHSEAVEHYTAA 865 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kA 865 (1166)
|..+-..|+|++|+.+|..|
T Consensus 22 Ave~D~~g~y~eAl~~Y~~A 41 (93)
T 1wfd_A 22 AVELDAESRYQQALVCYQEG 41 (93)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 33333444444444444333
No 335
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=22.34 E-value=3.3e+02 Score=24.50 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 915 SRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 915 ~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
...|.-+...|+|++|+..|..+++++-..+.
T Consensus 19 v~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk 50 (93)
T 1wfd_A 19 LKRAVELDAESRYQQALVCYQEGIDMLLQVLK 50 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 34445556788999999999999988666543
No 336
>3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster}
Probab=22.33 E-value=24 Score=27.25 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=16.8
Q ss_pred cCCCCC--CCCCCcchhhhhcccc
Q 039706 15 RSVSNS--SKPTRPRLHKTRKQSK 36 (1166)
Q Consensus 15 ~~~~~~--~~~~~~~~~~~~~~~~ 36 (1166)
+|+-.| |--|.-||..||||+-
T Consensus 4 asghqsd~sensqgrmvrvrrqsm 27 (50)
T 3tvt_B 4 ASGNQSDGSENSQGRMVRVRRQDM 27 (50)
T ss_pred cccccCCCCccccceEEEeeecch
Confidence 444445 5578889999999987
No 337
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=21.98 E-value=1.2e+02 Score=26.89 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=8.7
Q ss_pred hHHHHHcCChHHHHHHHHHHH
Q 039706 846 GNEAFQAGRHSEAVEHYTAAL 866 (1166)
Q Consensus 846 G~~~~~~G~yeEAie~y~kAL 866 (1166)
|..+-+.|+|++|+.+|..+|
T Consensus 18 Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 18 AVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 333344444444444444443
No 338
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=21.57 E-value=1.2e+02 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=14.4
Q ss_pred HHhhhhHHHHHcCChHHHHHHHHHHHh
Q 039706 841 CRKSAGNEAFQAGRHSEAVEHYTAALS 867 (1166)
Q Consensus 841 ~l~~lG~~~~~~G~yeEAie~y~kALe 867 (1166)
.+...|..+-+.|+|++|+.+|..+|+
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334445555555555555555555554
No 339
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=21.39 E-value=3.2e+02 Score=25.77 Aligned_cols=63 Identities=8% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHHhhccC-CCchhhhhHHHHHHHHhhhhhhHHh
Q 039706 911 LKAISRRATLYEMIRDYDHAASDFHRLIALLTKQIEKSNQS-GVSDRSINLANDLRQARMRLTAVEE 976 (1166)
Q Consensus 911 ~~A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e~~~~~-~~~dr~~~i~~~Lr~Aq~~Lk~~e~ 976 (1166)
+..+...|.-.-..++|++|+.+|..+++++-..+. .. ........+.....+...+.+.+..
T Consensus 18 Ai~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk---~e~~~~~~k~~lr~K~~eYl~RAE~LK~ 81 (117)
T 2cpt_A 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVK---YEAQGDKAKQSIRAKCTEYLDRAEKLKE 81 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHHHHHHHH
No 340
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.22 E-value=8.8e+02 Score=26.97 Aligned_cols=112 Identities=14% Similarity=-0.069 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCC----CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCchhHHHH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDP----DF------LRVQVRAANCHLALGEIEDASKYFRMCLQSGSDVCVDQKI 681 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP----~~------~~A~~~LA~lyl~lGd~eeAl~~fekALel~P~n~~a~~~ 681 (1166)
.+.|..++..|++.+|+..|+.+|..-| ++ .+-++.+++-|..-=..+.+. +. + +.+...+.+
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~R----r~--l-~~~~~kR~l 190 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELER----RS--L-KEGNTVRML 190 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHH----HT--C-CTTCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh--c-CcccHHHHH
Confidence 3468888999999999999999987533 11 112233333332211111111 11 1 111112222
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhCCC
Q 039706 682 AVEASDGLQKAQKVSECMQRSAQLLQNKTSNDAEIALGVIDEALFISSY 730 (1166)
Q Consensus 682 l~Ea~~~L~k~~~~~e~~~~a~~~l~~~~~gd~eeALe~lekALel~P~ 730 (1166)
-..+|-...+++..-..+..-...-..++.++|..|....++.|++.|.
T Consensus 191 ELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 191 ELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2222222222222211111111222245689999999999999999885
No 341
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.59 E-value=3e+02 Score=24.19 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhhHH
Q 039706 913 AISRRATLYEMIRDYDHAASDFHRLIALLTKQIE 946 (1166)
Q Consensus 913 A~~~LA~ay~~lGdyeeAi~~yekALeL~P~~~e 946 (1166)
-...+|.=|..+|+|+.|+.+|+.+++...+...
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~ 47 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLY 47 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 3466788888899999999999999887666554
No 342
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.34 E-value=3.4e+02 Score=23.92 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 039706 645 QVRAANCHLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 645 ~~~LA~lyl~lGd~eeAl~~fekALe 670 (1166)
.+.+|+=|..+|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45667777777777777777777765
No 343
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=20.30 E-value=25 Score=28.76 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=6.8
Q ss_pred ee-eecceeeeeec
Q 039706 1148 AC-ACQWRYQIVES 1160 (1166)
Q Consensus 1148 ~C-~C~G~~q~~~~ 1160 (1166)
.| +|+|+|++.+.
T Consensus 25 ~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 25 PCPKCLGKGVILTA 38 (53)
T ss_dssp ECTTTTTSSEEECH
T ss_pred cCCCCCCcEEEEEE
Confidence 45 55555554443
No 344
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.23 E-value=2.7e+02 Score=27.85 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHH-HHHH--HHHcCChHHHHHHHHHHHH
Q 039706 612 SNRAATRMALGRMRDALSDCMLAVAIDPDF------LRVQVR-AANC--HLALGEIEDASKYFRMCLQ 670 (1166)
Q Consensus 612 ~nrA~ayl~lG~y~eAI~~fekALeldP~~------~~A~~~-LA~l--yl~lGd~eeAl~~fekALe 670 (1166)
+..|..++..|+|-+|-+.++.+....+.. ...+++ +|.. +++.|+..-|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346788999999999999999998876554 445555 4444 4567999999999999986
Done!