Query 039707
Match_columns 536
No_of_seqs 189 out of 386
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 12:25:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 2.6E-90 5.6E-95 691.5 20.9 239 164-405 1-258 (258)
2 PF00651 BTB: BTB/POZ domain; 98.1 3.9E-06 8.4E-11 71.9 4.8 77 2-86 29-109 (111)
3 PHA03098 kelch-like protein; P 98.1 4.3E-05 9.4E-10 83.5 13.3 106 2-126 29-137 (534)
4 smart00225 BTB Broad-Complex, 97.9 1.2E-05 2.6E-10 64.5 4.6 66 2-69 17-84 (90)
5 PHA02713 hypothetical protein; 97.2 0.0055 1.2E-07 68.5 14.4 78 2-89 44-124 (557)
6 KOG4441 Proteins containing BT 97.1 0.0091 2E-07 67.2 15.1 199 2-273 54-260 (571)
7 PHA02790 Kelch-like protein; P 96.9 0.0018 3.9E-08 70.8 7.1 98 2-114 39-137 (480)
8 PF11822 DUF3342: Domain of un 94.5 0.029 6.4E-07 58.9 3.4 77 1-86 21-102 (317)
9 smart00512 Skp1 Found in Skp1 77.8 3.3 7.1E-05 36.2 4.1 62 4-67 21-104 (104)
10 PF08581 Tup_N: Tup N-terminal 66.9 9.2 0.0002 32.8 4.2 25 460-484 39-63 (79)
11 PF04508 Pox_A_type_inc: Viral 63.4 8.4 0.00018 25.9 2.6 18 461-478 2-19 (23)
12 PF01166 TSC22: TSC-22/dip/bun 63.3 13 0.00027 30.4 4.1 31 453-483 12-44 (59)
13 PF14363 AAA_assoc: Domain ass 57.9 7.6 0.00016 34.0 2.2 43 356-399 28-70 (98)
14 KOG0783 Uncharacterized conser 56.7 19 0.00042 42.9 5.7 87 2-116 576-676 (1267)
15 KOG2075 Topoisomerase TOP1-int 52.5 1.5E+02 0.0033 33.5 11.4 155 3-205 138-294 (521)
16 KOG4350 Uncharacterized conser 49.6 22 0.00047 39.3 4.4 80 2-86 62-143 (620)
17 PF14077 WD40_alt: Alternative 48.0 11 0.00025 29.3 1.5 20 463-482 14-33 (48)
18 TIGR01834 PHA_synth_III_E poly 47.1 25 0.00053 37.6 4.3 28 459-486 288-315 (320)
19 KOG4571 Activating transcripti 44.7 36 0.00078 35.9 5.0 38 449-486 249-288 (294)
20 KOG4603 TBP-1 interacting prot 37.3 30 0.00065 34.1 2.9 55 462-516 118-175 (201)
21 PF03931 Skp1_POZ: Skp1 family 31.0 48 0.001 26.4 2.7 39 4-44 20-58 (62)
22 KOG4682 Uncharacterized conser 30.9 79 0.0017 35.1 5.1 75 2-82 86-164 (488)
23 TIGR01544 HAD-SF-IE haloacid d 30.3 31 0.00068 36.0 1.9 101 298-418 3-124 (277)
24 KOG4603 TBP-1 interacting prot 30.3 98 0.0021 30.6 5.1 36 453-488 78-114 (201)
25 KOG2016 NEDD8-activating compl 30.1 1E+02 0.0022 34.6 5.8 84 299-385 294-434 (523)
26 PF07716 bZIP_2: Basic region 30.0 1.6E+02 0.0035 22.9 5.5 31 456-486 21-51 (54)
27 PF08172 CASP_C: CASP C termin 29.5 58 0.0013 33.5 3.7 23 461-483 87-109 (248)
28 PF10473 CENP-F_leu_zip: Leuci 29.4 1.1E+02 0.0023 29.1 5.1 34 453-486 79-113 (140)
29 COG3510 CmcI Cephalosporin hyd 29.0 40 0.00087 34.1 2.3 34 356-389 184-219 (237)
30 PF10929 DUF2811: Protein of u 27.2 44 0.00095 27.2 1.8 18 368-385 9-26 (57)
31 PHA01750 hypothetical protein 26.4 1.3E+02 0.0028 25.4 4.4 28 456-483 45-72 (75)
32 PF06481 COX_ARM: COX Aromatic 26.0 46 0.001 25.5 1.7 37 338-374 2-39 (47)
33 PF13075 DUF3939: Protein of u 23.4 63 0.0014 30.7 2.4 44 295-339 75-122 (140)
34 PF11123 DNA_Packaging_2: DNA 21.6 58 0.0013 28.1 1.6 16 367-382 31-46 (82)
35 PF12029 DUF3516: Domain of un 21.1 51 0.0011 36.7 1.5 27 361-387 212-238 (461)
36 smart00338 BRLZ basic region l 21.0 2.2E+02 0.0047 22.8 4.8 27 456-482 36-62 (65)
37 PF00170 bZIP_1: bZIP transcri 20.9 2.5E+02 0.0053 22.4 5.1 26 461-486 27-52 (64)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=2.6e-90 Score=691.50 Aligned_cols=239 Identities=42% Similarity=0.737 Sum_probs=222.1
Q ss_pred CCceeeecccCChHHHHHHHHHHHhCCCChhhHHHHHHHHHHhhhcCCCC-C-----CCcccchhhhhhhhHHHHHHhhC
Q 039707 164 IDWKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTKRWVLSSTV-G-----DETVSIYKRKTQRDVLEAVEKLL 237 (536)
Q Consensus 164 ~dWW~eDl~~L~~~lf~rvI~am~~~g~~~~~i~~~l~~Ya~k~lp~~~~-~-----~~~~~~~~~~~qr~llE~iv~LL 237 (536)
.|||||||+.|++++|+|||.+|+++||+|++|+++|++||+||||+... . ..........+||.+||+||+||
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL 80 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL 80 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999999999999999999999521 1 12234566789999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhhcccccccccccCCCCCCccccchHHHHHHHHHHHcCCCC-
Q 039707 238 PYERGLVPCTLLFEMLRYAIVLEASSDCRTGFEIRIGKQLDQATVRDLLIPSQGYAKEVQYDIECLRRILRNFCGSYSP- 316 (536)
Q Consensus 238 P~~k~~vsc~fLf~LLR~A~~l~as~~cr~~LE~rIg~qLdqAtldDLLIPs~~~~~~tlyDVd~V~Ril~~Fl~~~~~- 316 (536)
|.+++++||+|||+|||+|++++||+.||.+||+|||.|||||||||||||+.+...+|+||||+|+|||++||.+++.
T Consensus 81 P~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~~ 160 (258)
T PF03000_consen 81 PPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEEA 160 (258)
T ss_pred CCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999333445999999999999999998421
Q ss_pred ------------CCCchhhHHHHHHHHHHHHHHhcCCCCChHHHHHHhhhhccccCccccccchhhHHHHHHHHhCCCCC
Q 039707 317 ------------SSQFPGYMKVAELIEKFLAEIAADIDLKMNTFLSIVEMSAEVHTVTQRNSDGIYMAIDIYFHKHRYLT 384 (536)
Q Consensus 317 ------------~~~~~~l~~VakLvD~YLaEIA~D~nLk~~KF~~LA~~~ealPd~aR~~~DgLYRAIDiYLkaHp~Ls 384 (536)
.++.+++.+||||||+||+|||+|+||+|+||++|| |++|++||++|||||||||||||+||+||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~La---e~lP~~aR~~hD~LYrAID~YLk~Hp~ls 237 (258)
T PF03000_consen 161 GEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALA---EALPDSARPSHDGLYRAIDIYLKAHPGLS 237 (258)
T ss_pred ccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH---HHCCHhhhhccchHHHHHHHHHHHcccCC
Confidence 346889999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hhhhhccccccccCcCCHHHh
Q 039707 385 ESEREQVCRVLDCRKLSLEAC 405 (536)
Q Consensus 385 e~Er~~lCr~ldcqKLS~EAc 405 (536)
++||++||++|||||||+|||
T Consensus 238 ~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 238 EEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred HHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999
No 2
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.09 E-value=3.9e-06 Score=71.86 Aligned_cols=77 Identities=29% Similarity=0.412 Sum_probs=68.6
Q ss_pred ccccchhHHHHHHhhCC-C-CC-ceeeccCCCCChHHHHHHHHHhcCCCcccC-CCchHHHHhhHhhhccccccCCCchH
Q 039707 2 LLASKSAKVAAILDENP-N-QD-LSYFLRDISPDTETFELVLRFCHGFEPQIS-TENVIPIIGLADYLEMTEAHCRNNLL 77 (536)
Q Consensus 2 ~L~srSg~l~rli~~~~-~-~~-~~i~l~dfPGGaeaFEl~akFCYG~~i~lt-~~NVa~LrCAAeyLeMtE~~~~~NLi 77 (536)
+|+++|.+|++++.... . .. .+|.+++++ +++|+.+.+|||+..+.++ ..|+..+..+|.+++|.+ |.
T Consensus 29 iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~------L~ 100 (111)
T PF00651_consen 29 ILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPE------LK 100 (111)
T ss_dssp HHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHH------HH
T ss_pred hhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHH------HH
Confidence 57899999999999883 2 22 468888888 8899999999999999998 999999999999999985 99
Q ss_pred HHHHHHhhh
Q 039707 78 RRALIFFEQ 86 (536)
Q Consensus 78 ~ktE~FL~~ 86 (536)
..++.||.+
T Consensus 101 ~~~~~~l~~ 109 (111)
T PF00651_consen 101 KACEKFLQE 109 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999986
No 3
>PHA03098 kelch-like protein; Provisional
Probab=98.06 E-value=4.3e-05 Score=83.47 Aligned_cols=106 Identities=19% Similarity=0.259 Sum_probs=85.8
Q ss_pred ccccchhHHHHHHhhCCCCCceeeccCCCCChHHHHHHHHHhcCCCcccCCCchHHHHhhHhhhccccccCCCchHHHHH
Q 039707 2 LLASKSAKVAAILDENPNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRRAL 81 (536)
Q Consensus 2 ~L~srSg~l~rli~~~~~~~~~i~l~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE 81 (536)
+|+++|.||+.|+...-. ..+|.|++ -+++|+.+.+|-|..+++|+..||..|--||.+|+|++ |....+
T Consensus 29 vLaa~S~yF~~mf~~~~~-~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~ 98 (534)
T PHA03098 29 ILSSSSEYFKKMFKNNFK-ENEINLNI---DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCI 98 (534)
T ss_pred HHHhhhHHHHHHHhCCCC-CceEEecC---CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHH
Confidence 578999999999976533 35677776 78999999999999999999999999999999999996 999999
Q ss_pred HHhhhccCCChHHHHHHHHHhhhhhhhhhhhc---hHHHHHHHHHHHH
Q 039707 82 IFFEQEVLPSWNETIKALRVADDFLQQAVQLG---LVDACFRSLIEKA 126 (536)
Q Consensus 82 ~FL~~~vl~sW~dsi~vLksce~llp~AE~l~---Iv~RCidsla~ka 126 (536)
.||.+.+- ..+|-.++..|+..+ +.+.|.+-|+...
T Consensus 99 ~~l~~~l~---------~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf 137 (534)
T PHA03098 99 NYIIKIID---------DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNI 137 (534)
T ss_pred HHHHHhCC---------HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 99987542 345666667777654 5557777776554
No 4
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.93 E-value=1.2e-05 Score=64.54 Aligned_cols=66 Identities=27% Similarity=0.401 Sum_probs=56.9
Q ss_pred ccccchhHHHHHHhhCCC--CCceeeccCCCCChHHHHHHHHHhcCCCcccCCCchHHHHhhHhhhcccc
Q 039707 2 LLASKSAKVAAILDENPN--QDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTE 69 (536)
Q Consensus 2 ~L~srSg~l~rli~~~~~--~~~~i~l~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE 69 (536)
+|.++|.++++++..... ....+.+.| ..+++|+.+-+|+|+.++.+++.|+..+..+|+|++|.+
T Consensus 17 iL~~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~ 84 (90)
T smart00225 17 VLAACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPG 84 (90)
T ss_pred HHhhcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHH
Confidence 477899999999986543 335677766 569999999999999999999999999999999999975
No 5
>PHA02713 hypothetical protein; Provisional
Probab=97.20 E-value=0.0055 Score=68.48 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=66.0
Q ss_pred ccccchhHHHHHHhhCCC---CCceeeccCCCCChHHHHHHHHHhcCCCcccCCCchHHHHhhHhhhccccccCCCchHH
Q 039707 2 LLASKSAKVAAILDENPN---QDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLR 78 (536)
Q Consensus 2 ~L~srSg~l~rli~~~~~---~~~~i~l~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~ 78 (536)
+|++.|.||+.|+...-. ..-+|.|+++ .+++|+.+.+|.|..+ ||+.||-.|--||.||+|++ |..
T Consensus 44 vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~------l~~ 113 (557)
T PHA02713 44 ILAAGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDD------LVT 113 (557)
T ss_pred HHhhcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHH------HHH
Confidence 588999999999974311 1347888886 4899999999999765 79999999999999999996 999
Q ss_pred HHHHHhhhccC
Q 039707 79 RALIFFEQEVL 89 (536)
Q Consensus 79 ktE~FL~~~vl 89 (536)
..+.||.+.+-
T Consensus 114 ~C~~~l~~~l~ 124 (557)
T PHA02713 114 DCESYIKDYTN 124 (557)
T ss_pred HHHHHHHhhCC
Confidence 99999988653
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.12 E-value=0.0091 Score=67.19 Aligned_cols=199 Identities=22% Similarity=0.282 Sum_probs=131.5
Q ss_pred ccccchhHHHHHHhhCCC--CCceeeccCCCCChHHHHHHHHHhcCCCcccCCCchHHHHhhHhhhccccccCCCchHHH
Q 039707 2 LLASKSAKVAAILDENPN--QDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRR 79 (536)
Q Consensus 2 ~L~srSg~l~rli~~~~~--~~~~i~l~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~k 79 (536)
+|++-|.|++.++...-. ..-+|.|.+ .-++++++...|.|..+++|+-.||-.|--||.+|+|++ +..-
T Consensus 54 VLAa~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~ 125 (571)
T KOG4441|consen 54 VLAACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDA 125 (571)
T ss_pred HHHhccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHH
Confidence 588899999999984322 345888988 778999999999999999999999999999999999997 8999
Q ss_pred HHHHhhhccCCChHHHHHH-----HHHhhhhhhhhhhhchHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccCC
Q 039707 80 ALIFFEQEVLPSWNETIKA-----LRVADDFLQQAVQLGLVDACFRSLIEKAVADPHLLGAPMKNLSCDEDSEDADDAYR 154 (536)
Q Consensus 80 tE~FL~~~vl~sW~dsi~v-----Lksce~llp~AE~l~Iv~RCidsla~ka~~d~~~~~~p~~~~~s~~~~~~~~~~~~ 154 (536)
.-.||...+.. ..++.+ +.+|..|...|.+ .|.+..++
T Consensus 126 C~~fL~~~l~~--~Nclgi~~~a~~~~~~~L~~~a~~-~i~~~F~~---------------------------------- 168 (571)
T KOG4441|consen 126 CCEFLESQLDP--SNCLGIRRFAELHSCTELLEVADE-YILQHFAE---------------------------------- 168 (571)
T ss_pred HHHHHHhcCCH--HHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHH----------------------------------
Confidence 99999986643 233322 2344444443332 11111110
Q ss_pred CcccCCCCCCCceeeecccCChHHHHHHHHHHHhCCCChhhHHHHHHHHHHhhhcCCCCCCCcccchhhhhhhhHHHHHH
Q 039707 155 PNARRKLFVIDWKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTKRWVLSSTVGDETVSIYKRKTQRDVLEAVE 234 (536)
Q Consensus 155 ~~~~~~~~~~dWW~eDl~~L~~~lf~rvI~am~~~g~~~~~i~~~l~~Ya~k~lp~~~~~~~~~~~~~~~~qr~llE~iv 234 (536)
=|=-||-..||.+.+..+|..-.-.--+.+-+..+++.+.+.-.. +.+.- +.
T Consensus 169 ----------v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~---------------~R~~~---~~ 220 (571)
T KOG4441|consen 169 ----------VSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFE---------------EREEH---LP 220 (571)
T ss_pred ----------HhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHh---------------hHHHH---HH
Confidence 011255556888777777766555544555555555554443111 11111 22
Q ss_pred hhCCCCC-CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 039707 235 KLLPYER-GLVPCTLLFEMLRYAIVLEASSDCRTGFEIRI 273 (536)
Q Consensus 235 ~LLP~~k-~~vsc~fLf~LLR~A~~l~as~~cr~~LE~rI 273 (536)
.+|..-+ ..++-.||.......-.+...+.|+.-|..=.
T Consensus 221 ~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 221 ALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred HHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 2222222 44788999999999999999999998776544
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=96.92 E-value=0.0018 Score=70.85 Aligned_cols=98 Identities=10% Similarity=0.128 Sum_probs=76.7
Q ss_pred ccccchhHHHHHHhhC-CCCCceeeccCCCCChHHHHHHHHHhcCCCcccCCCchHHHHhhHhhhccccccCCCchHHHH
Q 039707 2 LLASKSAKVAAILDEN-PNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRRA 80 (536)
Q Consensus 2 ~L~srSg~l~rli~~~-~~~~~~i~l~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (536)
+|++-|.||+.|+... .++.-+|.+..+--.+++|+.+..|-|-++++||..||-.|-.||.||+|++ ++...
T Consensus 39 VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~------v~~~C 112 (480)
T PHA02790 39 ILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEF------IIYTC 112 (480)
T ss_pred hhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHH------HHHHH
Confidence 6889999999999743 1111234443223358999999999999999999999999999999999996 99999
Q ss_pred HHHhhhccCCChHHHHHHHHHhhhhhhhhhhhch
Q 039707 81 LIFFEQEVLPSWNETIKALRVADDFLQQAVQLGL 114 (536)
Q Consensus 81 E~FL~~~vl~sW~dsi~vLksce~llp~AE~l~I 114 (536)
..||.+.+-. ..|=.+...|+..++
T Consensus 113 ~~fL~~~l~~---------~NCl~i~~~A~~y~~ 137 (480)
T PHA02790 113 INFILRDFRK---------EYCVECYMMGIEYGL 137 (480)
T ss_pred HHHHHhhCCc---------chHHHHHHHHHHhCH
Confidence 9999986643 356666667776554
No 8
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=94.51 E-value=0.029 Score=58.92 Aligned_cols=77 Identities=23% Similarity=0.463 Sum_probs=62.3
Q ss_pred CccccchhHHHHHHhh---C--CCCCceeeccCCCCChHHHHHHHHHhcCCCcccCCCchHHHHhhHhhhccccccCCCc
Q 039707 1 ELLASKSAKVAAILDE---N--PNQDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNN 75 (536)
Q Consensus 1 ~~L~srSg~l~rli~~---~--~~~~~~i~l~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~N 75 (536)
++|++.=+||+..+.. . +.....|..+ =.-.+||.-.++++|-.+.|||.||+++---++||+|++
T Consensus 21 ~lL~~~M~YF~~~l~~~~~~~~~~~~idisVh---CDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~------ 91 (317)
T PF11822_consen 21 DLLVSEMRYFAEYLSRYINDSQRWEEIDISVH---CDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES------ 91 (317)
T ss_pred HHHHHhhHHHHHHHhhcccccCcCCCcceEEe---cChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH------
Confidence 3678888999999954 2 2233445444 234799999999999999999999999999999999996
Q ss_pred hHHHHHHHhhh
Q 039707 76 LLRRALIFFEQ 86 (536)
Q Consensus 76 Li~ktE~FL~~ 86 (536)
|++.+-.|...
T Consensus 92 Lve~cl~y~~~ 102 (317)
T PF11822_consen 92 LVEECLQYCHD 102 (317)
T ss_pred HHHHHHHHHHH
Confidence 99998888755
No 9
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=77.80 E-value=3.3 Score=36.19 Aligned_cols=62 Identities=21% Similarity=0.462 Sum_probs=41.2
Q ss_pred ccchhHHHHHHhhCCCC---CceeeccCCCCChHHHHHHHHHhcCCC---c----------------ccCCCchHHHHhh
Q 039707 4 ASKSAKVAAILDENPNQ---DLSYFLRDISPDTETFELVLRFCHGFE---P----------------QISTENVIPIIGL 61 (536)
Q Consensus 4 ~srSg~l~rli~~~~~~---~~~i~l~dfPGGaeaFEl~akFCYG~~---i----------------~lt~~NVa~LrCA 61 (536)
+..|+.|+.++.+.... +..|.|++++ +.+++.+..||+--+ . .+...++--|-.|
T Consensus 21 a~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~A 98 (104)
T smart00512 21 ARQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILA 98 (104)
T ss_pred HHHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 35789999999865421 1367777776 689999999999321 1 0334456666777
Q ss_pred Hhhhcc
Q 039707 62 ADYLEM 67 (536)
Q Consensus 62 AeyLeM 67 (536)
|.||++
T Consensus 99 AnyL~I 104 (104)
T smart00512 99 ANYLDI 104 (104)
T ss_pred HHhhCC
Confidence 777764
No 10
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=66.93 E-value=9.2 Score=32.78 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHh
Q 039707 460 KEMKIMSNKVMELERECLVMRKELQ 484 (536)
Q Consensus 460 ~el~~M~~rv~eLEkec~~Mk~~~~ 484 (536)
.||+.||..|.+||.....||+..+
T Consensus 39 ~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 39 QEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999998875
No 11
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=63.40 E-value=8.4 Score=25.88 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=15.7
Q ss_pred HHHhHHHHHHHHHHHHHH
Q 039707 461 EMKIMSNKVMELERECLV 478 (536)
Q Consensus 461 el~~M~~rv~eLEkec~~ 478 (536)
||++.|.|+++||++...
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 789999999999998653
No 12
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=63.27 E-value=13 Score=30.40 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=26.5
Q ss_pred hhH--HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039707 453 EDE--AMVIKEMKIMSNKVMELERECLVMRKEL 483 (536)
Q Consensus 453 ~~e--~~Lk~el~~M~~rv~eLEkec~~Mk~~~ 483 (536)
+|| +.||..+..+..|+.+||.|+...|+-.
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 454 9999999999999999999999888763
No 13
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=57.86 E-value=7.6 Score=33.99 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=34.2
Q ss_pred ccccCccccccchhhHHHHHHHHhCCCCChhhhhccccccccCc
Q 039707 356 AEVHTVTQRNSDGIYMAIDIYFHKHRYLTESEREQVCRVLDCRK 399 (536)
Q Consensus 356 ealPd~aR~~~DgLYRAIDiYLkaHp~Lse~Er~~lCr~ldcqK 399 (536)
-.+|++.......+|+|+..||.+....+. .|-++++.-|-+.
T Consensus 28 i~I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~ 70 (98)
T PF14363_consen 28 IVIPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKN 70 (98)
T ss_pred EEEEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCc
Confidence 567777778889999999999999987665 7777777666554
No 14
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=56.70 E-value=19 Score=42.86 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=58.7
Q ss_pred ccccchhHHHHHHhhCCC--------------CCceeeccCCCCChHHHHHHHHHhcCCCcccCCCchHHHHhhHhhhcc
Q 039707 2 LLASKSAKVAAILDENPN--------------QDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEM 67 (536)
Q Consensus 2 ~L~srSg~l~rli~~~~~--------------~~~~i~l~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeM 67 (536)
+|.+||..||+|+-...+ ..++|.++|+|| .+||+...|-|--. -+.|+.-=-.-|.+-
T Consensus 576 Il~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p--~mfe~lL~~iYtdt-~~~P~heDdidci~f---- 648 (1267)
T KOG0783|consen 576 ILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP--LMFEILLHYIYTDT-LLSPWHEDDIDCIRF---- 648 (1267)
T ss_pred EEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH--HHHHHHHHHHhccc-ccCCccccchhhhhc----
Confidence 588999999999974322 347788999995 78999999999543 345522222222221
Q ss_pred ccccCCCchHHHHHHHhhhccCCChHHHHHHHHHhhhhhhhhhhhchHH
Q 039707 68 TEAHCRNNLLRRALIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVD 116 (536)
Q Consensus 68 tE~~~~~NLi~ktE~FL~~~vl~sW~dsi~vLksce~llp~AE~l~Iv~ 116 (536)
+..+.|+-.|| ++|+-|.|.+|..++++
T Consensus 649 --s~~k~N~~qrt-------------------rtCeMl~~~lekf~l~e 676 (1267)
T KOG0783|consen 649 --SPLKENLSQRT-------------------RTCEMLANLLEKFHLAE 676 (1267)
T ss_pred --cccccChhhcc-------------------cHHHHHHHHHhhhhHHh
Confidence 12356766633 68999999999877765
No 15
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=52.46 E-value=1.5e+02 Score=33.52 Aligned_cols=155 Identities=15% Similarity=0.193 Sum_probs=101.3
Q ss_pred cccchhHHHHHHhhCCC--CCceeeccCCCCChHHHHHHHHHhcCCCcccCCCchHHHHhhHhhhccccccCCCchHHHH
Q 039707 3 LASKSAKVAAILDENPN--QDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRRA 80 (536)
Q Consensus 3 L~srSg~l~rli~~~~~--~~~~i~l~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (536)
|.--|..+.+|+...-. ...+|.++|+ -+.+|+---||=|+-.+.+.+.||-.+.=+|.= |-.+-|..++
T Consensus 138 la~gS~VFdaMf~g~~a~~~s~ei~lpdv--epaaFl~~L~flYsdev~~~~dtvi~tl~~AkK------Y~VpaLer~C 209 (521)
T KOG2075|consen 138 LADGSDVFDAMFYGGLAEDASLEIRLPDV--EPAAFLAFLRFLYSDEVKLAADTVITTLYAAKK------YLVPALERQC 209 (521)
T ss_pred hhcchHHHHHHhccCcccccCceeecCCc--ChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHH------hhhHHHHHHH
Confidence 34445566667654322 2468888887 489999999999999999999999988777642 3334588999
Q ss_pred HHHhhhccCCChHHHHHHHHHhhhhhhhhhhhchHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCccccCCCcccCC
Q 039707 81 LIFFEQEVLPSWNETIKALRVADDFLQQAVQLGLVDACFRSLIEKAVADPHLLGAPMKNLSCDEDSEDADDAYRPNARRK 160 (536)
Q Consensus 81 E~FL~~~vl~sW~dsi~vLksce~llp~AE~l~Iv~RCidsla~ka~~d~~~~~~p~~~~~s~~~~~~~~~~~~~~~~~~ 160 (536)
-+||....+. .....-|-+|-.++ ++=.+.++|++.|....- |..
T Consensus 210 Vkflr~~l~~--~naf~~L~q~A~lf---~ep~Li~~c~e~id~~~~-~al----------------------------- 254 (521)
T KOG2075|consen 210 VKFLRKNLMA--DNAFLELFQRAKLF---DEPSLISICLEVIDKSFE-DAL----------------------------- 254 (521)
T ss_pred HHHHHHhcCC--hHHHHHHHHHHHhh---cCHHHHHHHHHHhhhHHH-hhh-----------------------------
Confidence 9999985543 34455555664444 445589999999875541 110
Q ss_pred CCCCCceeeecccCChHHHHHHHHHHHhCCCChhhHHHHHHHHHH
Q 039707 161 LFVIDWKSEDLTVLSLQLFDAIIRSMNQHGVPPEFVASSVCQYTK 205 (536)
Q Consensus 161 ~~~~dWW~eDl~~L~~~lf~rvI~am~~~g~~~~~i~~~l~~Ya~ 205 (536)
..-||-|.-.+ .+.|..|++.= ...++.-.+.+++..|+.
T Consensus 255 ---~~EGf~did~~-~dt~~evl~r~-~l~~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 255 ---TPEGFCDIDST-RDTYEEVLRRD-TLEAREFRLFEAALKWAE 294 (521)
T ss_pred ---CccceeehhhH-HHHHHHHHhhc-ccchhHHHHHHHHHhhcc
Confidence 11377777666 77777766431 122444455566555554
No 16
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=49.60 E-value=22 Score=39.34 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=60.5
Q ss_pred ccccchhHHHHHHhhCCC--CCceeeccCCCCChHHHHHHHHHhcCCCcccCCCchHHHHhhHhhhccccccCCCchHHH
Q 039707 2 LLASKSAKVAAILDENPN--QDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLLRR 79 (536)
Q Consensus 2 ~L~srSg~l~rli~~~~~--~~~~i~l~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi~k 79 (536)
+|+.||.|++.|+...-. ..-.|-|.+ ..+|||-...|+-|-+++.++-----. .-+||+|.-.|+=-.|-.-
T Consensus 62 ILAaRs~yFRAlLYgGm~Es~q~~ipLq~--t~~eAF~~lLrYiYtg~~~l~~~~ed~---lld~LslAh~Ygf~~Le~a 136 (620)
T KOG4350|consen 62 ILAARSSYFRALLYGGMQESHQQLIPLQE--TNSEAFRALLRYIYTGKIDLAGVEEDI---LLDYLSLAHRYGFIQLETA 136 (620)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhccccccc--ccHHHHHHHHHHHhhcceecccchHHH---HHHHHHHHHhcCcHHHHHH
Confidence 588999999999974321 111232222 358999999999999999988755433 3589999999998888888
Q ss_pred HHHHhhh
Q 039707 80 ALIFFEQ 86 (536)
Q Consensus 80 tE~FL~~ 86 (536)
+-.||.+
T Consensus 137 iSeYl~~ 143 (620)
T KOG4350|consen 137 ISEYLKE 143 (620)
T ss_pred HHHHHHH
Confidence 8889887
No 17
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=47.97 E-value=11 Score=29.28 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=17.2
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 039707 463 KIMSNKVMELERECLVMRKE 482 (536)
Q Consensus 463 ~~M~~rv~eLEkec~~Mk~~ 482 (536)
+..+.||+|||.|...+|+-
T Consensus 14 e~l~vrv~eLEeEV~~LrKI 33 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKI 33 (48)
T ss_pred chheeeHHHHHHHHHHHHHH
Confidence 57899999999999888764
No 18
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=47.08 E-value=25 Score=37.58 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=26.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 039707 459 IKEMKIMSNKVMELERECLVMRKELQKS 486 (536)
Q Consensus 459 k~el~~M~~rv~eLEkec~~Mk~~~~k~ 486 (536)
|.||+.+..|+.||||+...++++++.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l 315 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDL 315 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999887
No 19
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=44.69 E-value=36 Score=35.89 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=32.3
Q ss_pred hh-hhhhH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 039707 449 EV-VAEDE-AMVIKEMKIMSNKVMELERECLVMRKELQKS 486 (536)
Q Consensus 449 ~~-~~~~e-~~Lk~el~~M~~rv~eLEkec~~Mk~~~~k~ 486 (536)
+| .+..| +.|-..=+.+|.++.+||||..-||+-|...
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 55667 7788888999999999999999999999766
No 20
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=37.26 E-value=30 Score=34.06 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=36.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCcccccCC---CCchhhhhhhhh
Q 039707 462 MKIMSNKVMELERECLVMRKELQKSCSLQQHNNHNDKNKQKNE---KPSMWKEMKRKF 516 (536)
Q Consensus 462 l~~M~~rv~eLEkec~~Mk~~~~k~~~~~~~~~~~~~~k~~~~---~~~~w~~~~~k~ 516 (536)
++.|+....+|-++|..|+..++++.+.-.|-.|-|+..-++. ..+.|+..+|.|
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf 175 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMF 175 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999765445443333211111 135787555544
No 21
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=30.99 E-value=48 Score=26.42 Aligned_cols=39 Identities=21% Similarity=0.449 Sum_probs=29.9
Q ss_pred ccchhHHHHHHhhCCCCCceeeccCCCCChHHHHHHHHHhc
Q 039707 4 ASKSAKVAAILDENPNQDLSYFLRDISPDTETFELVLRFCH 44 (536)
Q Consensus 4 ~srSg~l~rli~~~~~~~~~i~l~dfPGGaeaFEl~akFCY 44 (536)
+..|+.|+.++.+.......|.|+++. +.+++.+..+|+
T Consensus 20 a~~S~~i~~ml~~~~~~~~~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 20 AKQSKTIKNMLEDLGDEDEPIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp HTTSHHHHHHHHCTCCCGTEEEETTS---HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccccccccCccC--HHHHHHHHHHHH
Confidence 457999999998765533368888776 479999999997
No 22
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=30.89 E-value=79 Score=35.09 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=62.2
Q ss_pred ccccchhHHHHHHhhCCC----CCceeeccCCCCChHHHHHHHHHhcCCCcccCCCchHHHHhhHhhhccccccCCCchH
Q 039707 2 LLASKSAKVAAILDENPN----QDLSYFLRDISPDTETFELVLRFCHGFEPQISTENVIPIIGLADYLEMTEAHCRNNLL 77 (536)
Q Consensus 2 ~L~srSg~l~rli~~~~~----~~~~i~l~dfPGGaeaFEl~akFCYG~~i~lt~~NVa~LrCAAeyLeMtE~~~~~NLi 77 (536)
|-++-|+|+..|+...-. .-..++|+|=--...+|..|-+==|--.|+|.++-|+.+-.||.+|... .|+
T Consensus 86 ~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqld------gl~ 159 (488)
T KOG4682|consen 86 PYLFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLD------GLI 159 (488)
T ss_pred eeeeccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHh------hHH
Confidence 557789999999986533 2257788888889999999999999999999999999999999999986 355
Q ss_pred HHHHH
Q 039707 78 RRALI 82 (536)
Q Consensus 78 ~ktE~ 82 (536)
.|.-.
T Consensus 160 qrC~e 164 (488)
T KOG4682|consen 160 QRCGE 164 (488)
T ss_pred HHHHH
Confidence 55443
No 23
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=30.26 E-value=31 Score=35.99 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=77.1
Q ss_pred cchHHHHHHHHHHHcCCCCCCCchhhHHHHHHHHHHHHHHhcCCCCChHHHH-----------HHhhhhccccCcccccc
Q 039707 298 YDIECLRRILRNFCGSYSPSSQFPGYMKVAELIEKFLAEIAADIDLKMNTFL-----------SIVEMSAEVHTVTQRNS 366 (536)
Q Consensus 298 yDVd~V~Ril~~Fl~~~~~~~~~~~l~~VakLvD~YLaEIA~D~nLk~~KF~-----------~LA~~~ealPd~aR~~~ 366 (536)
=|.+-|++++..|...+.+. + .|-+|-.-+++||. .+.+.+..+|+.-|.-.
T Consensus 3 ~d~~~~~~~~~~~~~~g~~~-----l------------qvisDFD~Tlt~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~ 65 (277)
T TIGR01544 3 ADPTRVEEIICGLVKGGAAK-----L------------QIISDFDYTLSRFSYEDGKRCPTCHGIFDNCKLLTDECRKKL 65 (277)
T ss_pred CCHHHHHHHHHHHHhcChhh-----e------------EEeeccCccceeeecCCCCCCcchHhHHhhCCCCCHHHHHHH
Confidence 37889999999999876531 1 34556666777776 56667788888888777
Q ss_pred chhhHHHHHH--HHhCCCCChhhhh--------ccccccccCcCCHHHhHHHHhCCCCcchh
Q 039707 367 DGIYMAIDIY--FHKHRYLTESERE--------QVCRVLDCRKLSLEACEHAARNERLPLRL 418 (536)
Q Consensus 367 DgLYRAIDiY--LkaHp~Lse~Er~--------~lCr~ldcqKLS~EAc~HAaQNeRLPlR~ 418 (536)
..||. .| ++.-|.|+.+||- +.+.++=-++|+.+.-.-+.++.+++++=
T Consensus 66 ~~l~~---~Y~PiE~d~~~~~~eK~~~m~eWw~k~~~l~~~~~~~~e~i~~~v~~~~l~l~p 124 (277)
T TIGR01544 66 LQLKE---KYYPIEVDPVLTVEEKYPYMVEWWTKSHGLLVQQAFPKAKIKEIVAESDVMLKD 124 (277)
T ss_pred HHHHh---hccceecCCCCChHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCccCc
Confidence 77652 33 2456799999995 56888889999999999999988888887
No 24
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=30.25 E-value=98 Score=30.61 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=31.6
Q ss_pred hhH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhh
Q 039707 453 EDE-AMVIKEMKIMSNKVMELERECLVMRKELQKSCS 488 (536)
Q Consensus 453 ~~e-~~Lk~el~~M~~rv~eLEkec~~Mk~~~~k~~~ 488 (536)
..| +.|..++.+...+|.+|.+.|+.|-.||..+++
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 889999999999999999999999988888744
No 25
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=30.05 E-value=1e+02 Score=34.62 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=56.1
Q ss_pred chHHHHHHHHHHHcCCCCC--------CC-------------------chhhHHHHHHHHHHHHHHhcCC----------
Q 039707 299 DIECLRRILRNFCGSYSPS--------SQ-------------------FPGYMKVAELIEKFLAEIAADI---------- 341 (536)
Q Consensus 299 DVd~V~Ril~~Fl~~~~~~--------~~-------------------~~~l~~VakLvD~YLaEIA~D~---------- 341 (536)
|.=.+.+.+++|+..+..+ |+ ......|.+.+-.+|-+++.+|
T Consensus 294 ~FWim~~aLk~Fv~~e~~g~lPL~GtlPDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~ 373 (523)
T KOG2016|consen 294 DFWIMAAALKEFVLKEEGGFLPLRGTLPDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKL 373 (523)
T ss_pred HHHHHHHHHHHHHcccCCCccCCCCCCCccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHH
Confidence 3445778889999854431 11 2456688999999999999884
Q ss_pred ------CCChHHHHHHhhhhccccCccc----cccc-h---------hhHHHHHHHHhCCCCCh
Q 039707 342 ------DLKMNTFLSIVEMSAEVHTVTQ----RNSD-G---------IYMAIDIYFHKHRYLTE 385 (536)
Q Consensus 342 ------nLk~~KF~~LA~~~ealPd~aR----~~~D-g---------LYRAIDiYLkaHp~Lse 385 (536)
+|++-.|..++ +-.-++.+ .+.| . +|||+|-||+.|-....
T Consensus 374 fCkna~~lkv~r~~~~~---eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG 434 (523)
T KOG2016|consen 374 FCKNAAKLKVCRGRTLA---EEYEKSITELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPG 434 (523)
T ss_pred HHhhhhcceeeecchhh---hhhcccchhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555566677 44333333 3333 3 69999999998876543
No 26
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.95 E-value=1.6e+02 Score=22.85 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=25.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 039707 456 AMVIKEMKIMSNKVMELERECLVMRKELQKS 486 (536)
Q Consensus 456 ~~Lk~el~~M~~rv~eLEkec~~Mk~~~~k~ 486 (536)
+.-|..++.|..+|.+|+.+...+++++..+
T Consensus 21 ~rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 21 QRKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999888776
No 27
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.50 E-value=58 Score=33.51 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 039707 461 EMKIMSNKVMELERECLVMRKEL 483 (536)
Q Consensus 461 el~~M~~rv~eLEkec~~Mk~~~ 483 (536)
.=|+.|.|+.|||+|....++++
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~ 109 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTI 109 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666665555444433
No 28
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=29.41 E-value=1.1e+02 Score=29.09 Aligned_cols=34 Identities=29% Similarity=0.263 Sum_probs=24.0
Q ss_pred hhH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh
Q 039707 453 EDE-AMVIKEMKIMSNKVMELERECLVMRKELQKS 486 (536)
Q Consensus 453 ~~e-~~Lk~el~~M~~rv~eLEkec~~Mk~~~~k~ 486 (536)
+.| ..|-.+++.|+.||.+||.-++....-|+..
T Consensus 79 ~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 79 RSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445 6677777888888888887777776666544
No 29
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=28.98 E-value=40 Score=34.08 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=27.2
Q ss_pred cccc--CccccccchhhHHHHHHHHhCCCCChhhhh
Q 039707 356 AEVH--TVTQRNSDGIYMAIDIYFHKHRYLTESERE 389 (536)
Q Consensus 356 ealP--d~aR~~~DgLYRAIDiYLkaHp~Lse~Er~ 389 (536)
+-+| +..+..-+|=|+||.-||+.||+==|.++.
T Consensus 184 ~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 184 NDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred cCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 6777 666677999999999999999965555543
No 30
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=27.16 E-value=44 Score=27.22 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHhCCCCCh
Q 039707 368 GIYMAIDIYFHKHRYLTE 385 (536)
Q Consensus 368 gLYRAIDiYLkaHp~Lse 385 (536)
-||.|+.-||+.||+-..
T Consensus 9 ~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 9 DLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHcCCCchH
Confidence 589999999999997643
No 31
>PHA01750 hypothetical protein
Probab=26.38 E-value=1.3e+02 Score=25.41 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 039707 456 AMVIKEMKIMSNKVMELERECLVMRKEL 483 (536)
Q Consensus 456 ~~Lk~el~~M~~rv~eLEkec~~Mk~~~ 483 (536)
..|+.|++..+.|..+||+....+|+.+
T Consensus 45 dNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 45 DNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4455555555555555555544444433
No 32
>PF06481 COX_ARM: COX Aromatic Rich Motif; InterPro: IPR010514 COX2 (Cytochrome O ubiquinol OXidase 2) is a major component of the respiratory complex during vegetative growth. It transfers electrons from a quinol to the binuclear centre of the catalytic subunit 1. The function of this region is not known.; GO: 0008827 cytochrome o ubiquinol oxidase activity, 0022900 electron transport chain, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1CYX_A 1CYW_A 1FFT_G.
Probab=25.97 E-value=46 Score=25.52 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=23.7
Q ss_pred hcCCCCChHHHHHHhhhhccccC-ccccccchhhHHHH
Q 039707 338 AADIDLKMNTFLSIVEMSAEVHT-VTQRNSDGIYMAID 374 (536)
Q Consensus 338 A~D~nLk~~KF~~LA~~~ealPd-~aR~~~DgLYRAID 374 (536)
|+...|....|.+||+=|+..|- +-...++|||..|-
T Consensus 2 ~s~~~L~~~~Y~~La~PS~~~pv~yfssv~p~LF~~Iv 39 (47)
T PF06481_consen 2 ASPKTLDMASYDELAKPSENNPVTYFSSVEPGLFDDIV 39 (47)
T ss_dssp C-S--B-HHHHHHHCSS-SS--SEEES-B-TTHHHHHH
T ss_pred CCcccCCHHHHHHHHCcCcCCCceeeccCCHHHHHHHH
Confidence 45677889999999988888888 88889999998763
No 33
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=23.41 E-value=63 Score=30.70 Aligned_cols=44 Identities=9% Similarity=0.228 Sum_probs=31.0
Q ss_pred ccccchHHHHHHHHHHHcCCCCCC----CchhhHHHHHHHHHHHHHHhc
Q 039707 295 EVQYDIECLRRILRNFCGSYSPSS----QFPGYMKVAELIEKFLAEIAA 339 (536)
Q Consensus 295 ~tlyDVd~V~Ril~~Fl~~~~~~~----~~~~l~~VakLvD~YLaEIA~ 339 (536)
+..|.+|.||+-|++|+.....-| +...-.--.+| .+||.|+-+
T Consensus 75 ~ip~~iD~VQ~AVD~Y~~e~~~lPi~~~~~~~~Vd~~kL-~~YL~E~P~ 122 (140)
T PF13075_consen 75 DIPKEIDKVQKAVDQYVKETGKLPIIPYDELRQVDFFKL-GHYLDELPK 122 (140)
T ss_pred hCHHHHHHHHHHHHHHHHhcCccCCcCCCccceeeHHHH-HHHHhcCCC
Confidence 345789999999999998766532 22333344677 999998743
No 34
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=21.58 E-value=58 Score=28.06 Aligned_cols=16 Identities=25% Similarity=0.625 Sum_probs=14.3
Q ss_pred chhhHHHHHHHHhCCC
Q 039707 367 DGIYMAIDIYFHKHRY 382 (536)
Q Consensus 367 DgLYRAIDiYLkaHp~ 382 (536)
-.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999974
No 35
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=21.06 E-value=51 Score=36.74 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=25.3
Q ss_pred ccccccchhhHHHHHHHHhCCCCChhh
Q 039707 361 VTQRNSDGIYMAIDIYFHKHRYLTESE 387 (536)
Q Consensus 361 ~aR~~~DgLYRAIDiYLkaHp~Lse~E 387 (536)
+.++..|=||-|.++|-+.|||+.+.+
T Consensus 212 yPkPL~e~L~~af~~y~~~hPWv~~~~ 238 (461)
T PF12029_consen 212 YPKPLAELLEAAFETYRRGHPWVGDFE 238 (461)
T ss_pred CCCchHHHHHHHHHHHHhcCCcccCCC
Confidence 899999999999999999999997765
No 36
>smart00338 BRLZ basic region leucin zipper.
Probab=20.97 E-value=2.2e+02 Score=22.77 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=13.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 039707 456 AMVIKEMKIMSNKVMELERECLVMRKE 482 (536)
Q Consensus 456 ~~Lk~el~~M~~rv~eLEkec~~Mk~~ 482 (536)
+.|..+-+.++.+|..|+.++..++.+
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555554444
No 37
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=20.92 E-value=2.5e+02 Score=22.42 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=12.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhh
Q 039707 461 EMKIMSNKVMELERECLVMRKELQKS 486 (536)
Q Consensus 461 el~~M~~rv~eLEkec~~Mk~~~~k~ 486 (536)
.++.|..+|.+|+.+...|+.++..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444444443
Done!