BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039710
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 137/286 (47%), Gaps = 38/286 (13%)
Query: 29 LSEACQEWGFFYVTNHGISQDMFKKVCSFSKRMFSSPTDTKLKLGPSSCIKTYTPHFIAS 88
+ +AC+ WGFF + NHGI +++ V +K + C + +AS
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKK------------CXEQRFKELVAS 71
Query: 89 PYFESLRVSGPD-------YFAAAKASACVLFGQQSSDFSELLQEYGIKMVELSQRISKI 141
E ++ D + S ++ E+ +++ ++ +L++ + +
Sbjct: 72 KALEGVQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDL 131
Query: 142 ILMSLGGDYERKFYESEFGKCQGY---LRIINYTP---PETVKEDKELEGLGMHTDMSCL 195
+ +LG E+ + ++ F +G ++ NY P P+ +K GL HTD +
Sbjct: 132 LCENLG--LEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIK------GLRAHTDAGGI 183
Query: 196 TLVYQDE-IGGLQMRSKEGEWIDIFPCENSLVVNVGDLMQAWSNGRLRSSEHRVVLKRFI 254
L++QD+ + GLQ+ K+G+WID+ P +S+VVN+GD ++ +NG+ +S HRV+ ++
Sbjct: 184 ILLFQDDKVSGLQLL-KDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDG 242
Query: 255 NRLSLAFFWGFEDEKVIRAPDEVV---GEGCSRIYKPFVCLDYLKF 297
R SLA F+ + VI +V E ++Y FV DY K
Sbjct: 243 ARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKL 288
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 127/280 (45%), Gaps = 25/280 (8%)
Query: 11 RLPVLDL------SQPVSPSFLSSLSEACQEWGFFYVTNHGISQDMFKKVCSFSKRMFSS 64
++P +DL + + + + L +A +WG ++ NHGI D+ ++V + FS
Sbjct: 45 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 104
Query: 65 PTDTKLKLGPSSCIKTYTPHFIASPYFESLRVSGPDYF----AAAKASACVLFGQQSSDF 120
+ K K + S ++ DYF + ++ + SD+
Sbjct: 105 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 164
Query: 121 SELLQEYGIKMVELSQRISKIILMSLGGDYERKFYESEFGKCQGYL--RIINYTP----P 174
E EY + L+ ++ K + + LG + +R E E G + L INY P P
Sbjct: 165 IEATSEYAKCLRLLATKVFKALSVGLGLEPDR--LEKEVGGLEELLLQMKINYYPKCPQP 222
Query: 175 ETVKEDKELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEGEWIDIFPCENSLVVNVGDLMQ 234
E G+ HTD+S LT + + + GLQ+ EG+W+ +S+V+++GD ++
Sbjct: 223 ELAL------GVEAHTDVSALTFILHNMVPGLQLFY-EGKWVTAKCVPDSIVMHIGDTLE 275
Query: 235 AWSNGRLRSSEHRVVLKRFINRLSLAFFWGFEDEKVIRAP 274
SNG+ +S HR ++ + R+S A F +K++ P
Sbjct: 276 ILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKP 315
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 127/280 (45%), Gaps = 25/280 (8%)
Query: 11 RLPVLDL------SQPVSPSFLSSLSEACQEWGFFYVTNHGISQDMFKKVCSFSKRMFSS 64
++P +DL + + + + L +A +WG ++ NHGI D+ ++V + FS
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 105
Query: 65 PTDTKLKLGPSSCIKTYTPHFIASPYFESLRVSGPDYF----AAAKASACVLFGQQSSDF 120
+ K K + S ++ DYF + ++ + SD+
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 165
Query: 121 SELLQEYGIKMVELSQRISKIILMSLGGDYERKFYESEFGKCQGYL--RIINYTP----P 174
E EY + L+ ++ K + + LG + +R E E G + L INY P P
Sbjct: 166 IEATSEYAKCLRLLATKVFKALSVGLGLEPDR--LEKEVGGLEELLLQMKINYYPKCPQP 223
Query: 175 ETVKEDKELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEGEWIDIFPCENSLVVNVGDLMQ 234
E G+ HTD+S LT + + + GLQ+ EG+W+ +S+V+++GD ++
Sbjct: 224 ELAL------GVEAHTDVSALTFILHNMVPGLQLFY-EGKWVTAKCVPDSIVMHIGDTLE 276
Query: 235 AWSNGRLRSSEHRVVLKRFINRLSLAFFWGFEDEKVIRAP 274
SNG+ +S HR ++ + R+S A F +K++ P
Sbjct: 277 ILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKP 316
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 126/280 (45%), Gaps = 25/280 (8%)
Query: 11 RLPVLDL------SQPVSPSFLSSLSEACQEWGFFYVTNHGISQDMFKKVCSFSKRMFSS 64
++P +DL + + + + L +A +WG ++ NHGI D+ ++V + FS
Sbjct: 46 QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSL 105
Query: 65 PTDTKLKLGPSSCIKTYTPHFIASPYFESLRVSGPDYF----AAAKASACVLFGQQSSDF 120
+ K K + S ++ DYF + ++ + SD+
Sbjct: 106 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 165
Query: 121 SELLQEYGIKMVELSQRISKIILMSLGGDYERKFYESEFGKCQGYL--RIINYTP----P 174
E EY + L+ ++ K + + LG + +R E E G + L INY P P
Sbjct: 166 IEATSEYAKCLRLLATKVFKALSVGLGLEPDR--LEKEVGGLEELLLQXKINYYPKCPQP 223
Query: 175 ETVKEDKELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEGEWIDIFPCENSLVVNVGDLMQ 234
E G+ HTD+S LT + + + GLQ+ EG+W+ +S+V ++GD ++
Sbjct: 224 ELAL------GVEAHTDVSALTFILHNXVPGLQLFY-EGKWVTAKCVPDSIVXHIGDTLE 276
Query: 235 AWSNGRLRSSEHRVVLKRFINRLSLAFFWGFEDEKVIRAP 274
SNG+ +S HR ++ + R+S A F +K++ P
Sbjct: 277 ILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKP 316
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 122/296 (41%), Gaps = 34/296 (11%)
Query: 25 FLSSLSEACQEWGFFYVTNHGISQDMFKKVCSFSKRMFSSPTDTKLKL-GPSSCIKTYTP 83
F L + + +GF ++++ + Q +K F+ P +TK + G + Y P
Sbjct: 22 FAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIP 81
Query: 84 ----------HFIASPYFESLRVSGPDYFAAAKASACV------LFGQQSSDFSELLQEY 127
H+ ++ R P + A + V F S L
Sbjct: 82 FGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGX 141
Query: 128 GIKMVELSQRISKIILMSLGGDYERKFYESEFGKCQGYLRIINYTPPETVKEDKELEGLG 187
G K++E K+ ER F++ LR+++Y P + +D G
Sbjct: 142 GGKVLEAIATYLKL---------ERDFFKPTVQDGNSVLRLLHYPP---IPKDATGVRAG 189
Query: 188 MHTDMSCLTLVYQDEIGGLQMRSKEGEWIDIFPCENSLVVNVGDLMQAWSNGRLRSSEHR 247
H D++ +TL+ E GGL++ ++G+W+ I P LV+N+GD ++ +N L S+ HR
Sbjct: 190 AHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR 249
Query: 248 VVL----KRFINRLSLAFFWGFEDEKVIRAPDE-VVGEGCSRIYKPFVCLDYLKFR 298
VV +R + R S FF F + I+ V E R + ++L+ R
Sbjct: 250 VVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQR 305
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 111/256 (43%), Gaps = 48/256 (18%)
Query: 31 EACQEWGFFYVTNHGISQDMFKKVCSFSKRMFSSPTDTKLKLG--------PSSCIKTYT 82
E+ +E GF ++NH I +++ +++ + + F+S + P+S +T
Sbjct: 20 ESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFPASISETAK 79
Query: 83 PHFIAS--PYF---------ESLRVSGPDYFAAAKASACVLFGQ-QSSDFSELLQEYGIK 130
H + Y+ +SLR + Y+ A A L ++ E+ ++ I
Sbjct: 80 GHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIP 139
Query: 131 MVELSQRISKIILMSLGGDYERKFYESEFGKCQGYLRIINYTPPETVKEDKELEGLGMHT 190
+ E K +L RI++Y PP T E+ H
Sbjct: 140 LPEXIANSHKTLL-----------------------RILHY-PPXTGDEEXGAIRAAAHE 175
Query: 191 DMSCLTLVYQDEIGGLQMRSKEGEWIDIFPCENSLVVNVGDLMQAWSNGRLRSSEHRVV- 249
D++ +T++ GLQ+++K+G W+D+ ++++N+GD +Q S+G S+ HRV+
Sbjct: 176 DINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVIN 235
Query: 250 ---LKRFINRLSLAFF 262
+ +R+SL F
Sbjct: 236 PEGTDKTKSRISLPLF 251
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 128/323 (39%), Gaps = 42/323 (13%)
Query: 3 MPELQISVRLPVLDLSQPVSPSFLSSLSEACQEWGFFYVTNHGIS-QDMFKKVCSFSKRM 61
+P++ +S P+ Q + A ++ GFFY NHGI+ Q + +K F M
Sbjct: 9 VPKIDVS---PLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEF--HM 63
Query: 62 FSSPTDTKLKLGPSSCIKTYTPHFIASPYF--------ESLRVSGPDYF-------AAAK 106
+P + K L + K + A Y ES P++ A
Sbjct: 64 SITPEE-KWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTP 122
Query: 107 ASACVLFGQQSSD--FSELLQEYGIKMVELSQRISKIILMSLGGDYERKFYESEF--GKC 162
++ ++ F + ++Y + LS + K ++LG E F+ F
Sbjct: 123 THEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGK--EENFFARHFKPDDT 180
Query: 163 QGYLRIINYT-----PPETVKEDKELEGLGM--HTDMSCLTLVYQDEIGGLQMRSKEGEW 215
+ +I Y P +K + L H D+S +T++YQ + LQ+ + G +
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-Y 239
Query: 216 IDIFPCENSLVVNVGDLMQAWSNGRLRSSEHRVVLKRFIN--RLSLAFFWGFEDEKVIRA 273
DI + ++N G M +N ++ HRV +++N R SL FF + VI
Sbjct: 240 QDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV---KWVNAERQSLPFFVNLGYDSVIDP 296
Query: 274 PDEVVGEGCSRIYKPFVCLDYLK 296
D G S +P DYL+
Sbjct: 297 FDPREPNGKSD-REPLSYGDYLQ 318
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 128/323 (39%), Gaps = 42/323 (13%)
Query: 3 MPELQISVRLPVLDLSQPVSPSFLSSLSEACQEWGFFYVTNHGIS-QDMFKKVCSFSKRM 61
+P++ +S P+ Q + A ++ GFFY NHGI+ Q + +K F M
Sbjct: 9 VPKIDVS---PLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEF--HM 63
Query: 62 FSSPTDTKLKLGPSSCIKTYTPHFIASPYF--------ESLRVSGPDYF-------AAAK 106
+P + K L + K + A Y ES P++ A
Sbjct: 64 SITPEE-KWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTP 122
Query: 107 ASACVLFGQQSSD--FSELLQEYGIKMVELSQRISKIILMSLGGDYERKFYESEF--GKC 162
++ ++ F + ++Y + LS + K ++LG E F+ F
Sbjct: 123 THEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGK--EENFFARHFKPDDT 180
Query: 163 QGYLRIINYT-----PPETVKEDKELEGLGM--HTDMSCLTLVYQDEIGGLQMRSKEGEW 215
+ +I Y P +K + L H D+S +T++YQ + LQ+ + G +
Sbjct: 181 LASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-Y 239
Query: 216 IDIFPCENSLVVNVGDLMQAWSNGRLRSSEHRVVLKRFIN--RLSLAFFWGFEDEKVIRA 273
DI + ++N G M +N ++ HRV +++N R SL FF + VI
Sbjct: 240 QDIEADDTGYLINCGSYMAHLTNNYYKAPIHRV---KWVNAERQSLPFFVNLGYDSVIDP 296
Query: 274 PDEVVGEGCSRIYKPFVCLDYLK 296
D G S +P DYL+
Sbjct: 297 FDPREPNGKSD-REPLSYGDYLQ 318
>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex
pdb|1VJ9|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt464 Complex
pdb|1VJA|U Chain U, Urokinase Plasminogen Activator B-Chain-Jt463 Complex
Length = 262
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEGE 214
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 92 EVENLILHKDYSADTLAHHNDIALLKIRSKEGR 124
>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And
5-Nitro-1h-Indole-2- Amidine
Length = 246
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEGE 214
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU8|A Chain A, Crystal Structure Of The Urokinase
pdb|4FU9|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUB|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUC|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUD|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUE|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUF|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUG|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUH|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUI|A Chain A, Crystal Structure Of The Urokinase
pdb|4FUJ|A Chain A, Crystal Structure Of The Urokinase
pdb|4DVA|U Chain U, The Crystal Structure Of Human Urokinase-type Plasminogen
Activator Catalytic Domain
pdb|4DW2|U Chain U, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 246
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEGE 214
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W10|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W11|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W12|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W13|U Chain U, Urokinase Type Plasminogen Activator
pdb|1W14|U Chain U, Urokinase Type Plasminogen Activator
pdb|3MHW|U Chain U, The Complex Crystal Structure Of Urokianse And 2-
Aminobenzothiazole
Length = 247
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEG 213
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEG 108
>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With
2- Amino-5-Hydroxy-Benzimidazole
Length = 245
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEGE 214
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|B Chain B, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|C Chain C, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|D Chain D, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|E Chain E, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
pdb|2VNT|F Chain F, Urokinase-Type Plasminogen Activator Inhibitor Complex
With A 1-(7-Sulphoamidoisoquinolinyl)guanidine
Length = 276
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEG 213
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 100 EVENLILHKDYSADTLAHHNDIALLKIRSKEG 131
>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex
pdb|1F5K|U Chain U, Urokinase Plasminogen Activator B-Chain-Benzamidine
Complex
pdb|1F5L|A Chain A, Urokinase Plasminogen Activator B-Chain-Amiloride Complex
pdb|1F92|A Chain A, Urokinase Plasminogen Activator B Chain-Uki-1d Complex
pdb|2R2W|U Chain U, Urokinase Plasminogen Activator B-Chain-Gppe Complex
pdb|2VIN|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIO|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIP|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIQ|A Chain A, Fragment-based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-type
Plasminogen Activator
pdb|2VIV|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
pdb|2VIW|A Chain A, Fragment-Based Discovery Of Mexiletine Derivatives As
Orally Bioavailable Inhibitors Of Urokinase-Type
Plasminogen Activator
Length = 253
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEG 213
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEG 108
>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWI|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWJ|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1OWK|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQT|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase
pdb|1U6Q|A Chain A, Substituted 2-naphthamadine Inhibitors Of Urokinase
Length = 245
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEGE 214
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|2O8W|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH
Inhibitors
pdb|3PB1|E Chain E, Crystal Structure Of A Michaelis Complex Between
Plasminogen Activator Inhibitor-1 And Urokinase-Type
Plasminogen Activator
Length = 253
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEG 213
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEG 108
>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed
By Crystal Structure Of Human Urokinase-Type Plasminogen
Activator Complexed With A Cyclic Peptidyl Inhibitor,
Upain-1
pdb|2O8T|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type
Plasminogen Activator (C122aN145Q) IN COMPLEX WITH
Inhibitors
pdb|3KGP|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KHV|A Chain A, Crystal Structures Of Urokinase-Type Plasminogen Activator
In Complex With 4-(Aminomethyl) Benzoic Acid And 4-
(Aminomethyl-Phenyl)-Methanol
pdb|3KID|U Chain U, The Crystal Structures Of 2-Aminobenzothiazole-Based
Inhibitors In Complexes With Urokinase-Type Plasminogen
Activator
pdb|3M61|U Chain U, Crystal Structure Of Complex Of Urokinase And A Upain-1
Variant(W3a) In Ph4.6 Condition
pdb|3OX7|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph4.6
pdb|3OY5|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh027 At Ph7.4
pdb|3OY6|U Chain U, The Crystal Structure Of Upa Complex With Peptide
Inhibitor Mh036 At Ph4.6
pdb|3QN7|A Chain A, Potent And Selective Bicyclic Peptide Inhibitor (Uk18) Of
Human Urokinase-Type Plasminogen Activator(Upa)
Length = 253
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEG 213
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEG 108
>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1OWH|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQA|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
pdb|1SQO|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase
Length = 245
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEGE 214
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi- Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI7|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GI9|B Chain B, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
Length = 245
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEGE 214
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEGR 109
>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
pdb|3IG6|D Chain D, Low Molecular Weigth Human Urokinase Type Plasminogen
Activator 2-[6-
(3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino-
Pyrrolidin-1-
Yl)-3,
5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid
Complex
Length = 253
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEG 213
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEG 108
>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1O5B|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (ala190 Upa)
pdb|1O5C|B Chain B, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
Length = 253
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEG 213
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEG 108
>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJ8|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJA|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJB|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1O3P|B Chain B, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1C5W|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5X|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Y|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5Z|B Chain B, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1GJ9|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJD|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
pdb|1GJC|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites
Of Ser190 Trypsin-Like Serine Protease Drug Targets
Length = 253
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEG 213
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEG 108
>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
pdb|1LMW|D Chain D, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg
Chloromethyl Ketone)
Length = 253
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 182 ELEGLGMHTDMSCLTLVYQDEIGGLQMRSKEG 213
E+E L +H D S TL + ++I L++RSKEG
Sbjct: 77 EVENLILHKDYSADTLAHHNDIALLKIRSKEG 108
>pdb|3T38|A Chain A, Corynebacterium Glutamicum Thioredoxin-Dependent Arsenate
Reductase Cg_arsc1'
pdb|3T38|B Chain B, Corynebacterium Glutamicum Thioredoxin-Dependent Arsenate
Reductase Cg_arsc1'
Length = 213
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 229 VGDLMQAWSNGRLRSSE-HRVVLKRFINR---LSLAFFWGFEDEKVIRAPDEVVGEGCSR 284
G ++ S G L +SE H +VL+ R +S AF D+ VIRA D V+ GC
Sbjct: 106 AGSSVEVRSAGSLPASEIHPLVLEILSERGVNISDAFPKPLTDD-VIRASDYVITXGCGD 164
Query: 285 IYKPFVCLDYL--KFRENNDEGKFERIAHTVNDFAG 318
+ + YL + + +DEG+ ++I + + G
Sbjct: 165 VCPXYPGKHYLDWELADPSDEGE-DKIQEIIEEIDG 199
>pdb|3QE5|A Chain A, Complete Structure Of Streptococcus Mutans Antigen III
CARBOXY- Terminus
pdb|3QE5|B Chain B, Complete Structure Of Streptococcus Mutans Antigen III
CARBOXY- Terminus
Length = 516
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 119 DFSELLQEYGIKMVELSQRISKIILMSLGGDYERKFYESEFGKCQGYLRIINYTPPETVK 178
+F + + GI + +S + K + GG YE + Y+ +FG +IN P K
Sbjct: 300 EFYDTYVKTGIDLKIVSPMVVKKQMGQTGGSYENQAYQIDFGNGYASNIVINNVPKINPK 359
Query: 179 EDKEL 183
+D L
Sbjct: 360 KDVTL 364
>pdb|3OPU|A Chain A, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|B Chain B, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|C Chain C, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|D Chain D, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|E Chain E, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|F Chain F, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
Length = 339
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 119 DFSELLQEYGIKMVELSQRISKIILMSLGGDYERKFYESEFGKCQGYLRIINYTPPETVK 178
+F + + GI + +S + K + GG YE + Y+ +FG +IN P K
Sbjct: 124 EFYDTYVKTGIDLKIVSPMVVKKQMGQTGGSYENQAYQIDFGNGYASNIVINNVPKINPK 183
Query: 179 EDKEL 183
+D L
Sbjct: 184 KDVTL 188
>pdb|1HBR|A Chain A, R-State Form Of Chicken Hemoglobin D
pdb|1HBR|C Chain C, R-State Form Of Chicken Hemoglobin D
Length = 141
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 60 RMFSSPTDTKLKLGPSSCIKTYTPHFIASPYFESLRVSGPDYFAAAKASACVLFGQQSSD 119
RMF++ TK TY PHF SP + +R G A +A S
Sbjct: 31 RMFTTYPQTK----------TYFPHFDLSPGSDQVRGHGKKVLGAL-GNAVKNVDNLSQA 79
Query: 120 FSEL--LQEYGIKMVE-----LSQRISKIILMSLGGDY 150
+EL L Y +++ LSQ I ++ + +G DY
Sbjct: 80 MAELSNLHAYNLRVDPVNFKLLSQCIQVVLAVHMGKDY 117
>pdb|2WQS|A Chain A, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Gordonii Surface Protein Sspb
Length = 356
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 147 GGDYERKFYESEFGKCQGYLRIINYTPPETVKED 180
GG YE K Y+ +FG ++N P T K+D
Sbjct: 170 GGKYENKAYQIDFGNGYATEVVVNNVPKITPKKD 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,031,959
Number of Sequences: 62578
Number of extensions: 407507
Number of successful extensions: 862
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 46
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)