BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039712
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
Query: 2 LLESTIKTCQLNFNLKSTGFLDANTVAKMRTPRCGVADIVNGTTRMRSGKKKQQQNNHFH 61
+L+ T+K Q F L TG LD NT+ MR PRCG D+ N R K K +N +
Sbjct: 40 VLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPR--KPKWDKNQITY 97
Query: 62 TVSQWPASKFSLTYAFRLGTRGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFES 121
+ T T DA ARAFQ W+ T RFS+I D ADI I+F
Sbjct: 98 RI-------IGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRIHD-GEADIMINFGR 146
Query: 122 RNHXXXXXXXXXXXXXXTLAHAFAP---TNGRFHYDADEPWAVGAVQ 165
H LAHAFAP G H+D DE W +G Q
Sbjct: 147 WEH---GDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQ 190
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
Query: 2 LLESTIKTCQLNFNLKSTGFLDANTVAKMRTPRCGVADIVNGTTRMRSGKKKQQQNNHFH 61
+L+ T+K Q F L TG LD NT+ MR PRCG D+ N R K K +N +
Sbjct: 38 VLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVANYNFFPR--KPKWDKNQITY 95
Query: 62 TVSQWPASKFSLTYAFRLGTRGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFES 121
+ T T DA ARAFQ W+ T RFS+I D ADI I+F
Sbjct: 96 RI-------IGYTPDLDPETVDDAF---ARAFQVWSDVTPLRFSRIHD-GEADIMINFGR 144
Query: 122 RNHXXXXXXXXXXXXXXTLAHAFAP---TNGRFHYDADEPWAVGAVQ 165
H LAHAFAP G H+D DE W +G Q
Sbjct: 145 WEH---GDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLGEGQ 188
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 91/227 (40%), Gaps = 51/227 (22%)
Query: 7 IKTCQLNFNLKSTGFLDANTVAKMRTPRCGVADIVNGTTRMRSGKKKQQQNNHFHTVSQW 66
I+ Q L+ TG LD++T+ MR PRCGV D+ HF T
Sbjct: 47 IREMQKFLGLEVTGKLDSDTLEVMRKPRCGVPDV-----------------GHFRTFPGI 89
Query: 67 PA-SKFSLTYA---FRLGTRGDAI-TPVARAFQTWAANTQFRFSKIEDFAGADIKISFES 121
P K LTY + DA+ + V +A + W T FS++ + ADI ISF
Sbjct: 90 PKWRKTHLTYRIVNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYE-GEADIMISFAV 148
Query: 122 RNHXXXXXXXXXXXXXXTLAHAFAP---TNGRFHYDADEPWA---------------VGA 163
R H LAHA+AP NG H+D DE W +G
Sbjct: 149 REH---GDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGH 205
Query: 164 VQGAFDSLKDTYIIAPSTAVQNAPCTATVLWR-SLQGDDIQGIKALY 209
G F S ++ P + T L R L DDI GI++LY
Sbjct: 206 SLGLFHSANTEALMYPLYH------SLTDLTRFRLSQDDINGIQSLY 246
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 88/214 (41%), Gaps = 28/214 (13%)
Query: 7 IKTCQLNFNLKSTGFLDANTVAKMRTPRCGVADIVNGTTRMRSGKKKQQQNNHFHTVSQW 66
+K Q F LK TG DA T+ M+ PRCGV D+ + G + +Q + + + +
Sbjct: 45 LKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVAQFV--LTEGNPRWEQTHLTYRIENY 102
Query: 67 PASKFSLTYAFRLGTRGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXX 126
R D + +AFQ W+ T F+K+ + ADI ISF +H
Sbjct: 103 TPDL----------PRADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDH-- 149
Query: 127 XXXXXXXXXXXXTLAHAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAV 183
LAHAF P G H+D DE W + + + + S +
Sbjct: 150 -RDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVA-AHELGHSLGL 207
Query: 184 QNAPCTATVLWRS--------LQGDDIQGIKALY 209
++ +++ S L DDI GI+A+Y
Sbjct: 208 SHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIY 241
>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9
(gelatinase B)
Length = 425
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 65/148 (43%), Gaps = 19/148 (12%)
Query: 18 STGFLDANTVAKMRTPRCGVADIVNGTTRMRSGKKKQQQNNHFHTVSQWPASKFSLTYAF 77
TG LD+ T+ MRTPRCGV D+ G + G K H H ++ W + Y+
Sbjct: 63 ETGELDSATLKAMRTPRCGVPDL--GRFQTFEGDLKW----HHHNITYWIQN-----YSE 111
Query: 78 RLGTRGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXX 137
L R ARAF W+A T F+++ ADI I F H
Sbjct: 112 DL-PRAVIDDAFARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEH---GDGYPFDGKD 166
Query: 138 XTLAHAFAP---TNGRFHYDADEPWAVG 162
LAHAF P G H+D DE W++G
Sbjct: 167 GLLAHAFPPGPGIQGDAHFDDDELWSLG 194
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 90 ARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP--- 146
ARAFQ W+ T RFS+I D ADI I+F H LAHAFAP
Sbjct: 31 ARAFQVWSDVTPLRFSRIHD-GEADIMINFGRWEH---GDGYPFDGKDGLLAHAFAPGTG 86
Query: 147 TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQN--------APCTATVLWRSLQ 198
G H+D DE W++G G L + + +++ AP L
Sbjct: 87 VGGDSHFDDDELWSLGKGVGYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLS 146
Query: 199 GDDIQGIKALYN 210
DDI+GI+ LY
Sbjct: 147 QDDIKGIQELYG 158
>pdb|3AYU|A Chain A, Crystal Structure Of Mmp-2 Active Site Mutant In Complex
With App- Drived Decapeptide Inhibitor
Length = 167
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 90 ARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP--- 146
ARAFQ W+ T RFS+I D ADI I+F H LAHAFAP
Sbjct: 36 ARAFQVWSDVTPLRFSRIHD-GEADIMINFGRWEH---GDGYPFDGKDGLLAHAFAPGTG 91
Query: 147 TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQN--------APCTATVLWRSLQ 198
G H+D DE W +G G L + + +++ AP L
Sbjct: 92 VGGDSHFDDDELWTLGKGVGYSLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYTKNFRLS 151
Query: 199 GDDIQGIKALYN 210
DDI+GI+ LY
Sbjct: 152 QDDIKGIQELYG 163
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 56/138 (40%), Gaps = 30/138 (21%)
Query: 90 ARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP--- 146
ARAFQ W+ T RFS+I D ADI I+F H LAHAFAP
Sbjct: 37 ARAFQVWSDVTPLRFSRIHD-GEADIMINFGRWEH---GDGYPFDGKDGLLAHAFAPGTG 92
Query: 147 TNGRFHYDADEPW---------------AVGAVQGAFDSLKDTYIIAPSTAVQNAPCTAT 191
G H+D DE W G G S ++AP T T
Sbjct: 93 VGGDSHFDDDELWTNTSANYSLFLVAAHEFGHAMGLEHSQDPGALMAPI-------YTYT 145
Query: 192 VLWRSLQGDDIQGIKALY 209
+R L DDI+GI+ LY
Sbjct: 146 KNFR-LSQDDIKGIQELY 162
>pdb|1HFS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-764,004
Length = 160
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 30 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGN---VLAHAYAPGP 85
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S ++ P +
Sbjct: 86 GINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLY------HSL 139
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 140 TDLTRFRLSQDDINGIQSLY 159
>pdb|1CAQ|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-Peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1CIZ|A Chain A, X-ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1G4K|A Chain A, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|B Chain B, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|C Chain C, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1OO9|A Chain A, Orientation In Solution Of Mmp-3 Catalytic Domain And N-
Timp-1 From Residual Dipolar Couplings
pdb|3USN|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Stromelysin-1 Inhibited With The Thiadiazole Inhibitor
Ipnu-107859, Nmr, 1 Structure
Length = 168
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 35 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGN---VLAHAYAPGP 90
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S ++ P +
Sbjct: 91 GINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLY------HSL 144
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 145 TDLTRFRLSQDDINGIQSLY 164
>pdb|1QIC|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 161
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 29 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGN---VLAHAYAPGP 84
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S ++ P +
Sbjct: 85 GINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLY------HSL 138
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 139 TDLTRFRLSQDDINGIQSLY 158
>pdb|1USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-142372
pdb|2USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-141803
Length = 165
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 35 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGN---VLAHAYAPGP 90
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S ++ P +
Sbjct: 91 GINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLY------HSL 144
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 145 TDLTRFRLSQDDINGIQSLY 164
>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To
Constraint Conformational Sulfonamide Inhibitor
Length = 173
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V++A W F K+ + ADI I F H TLAHAFAP
Sbjct: 35 VSKALNMWGKEIPLHFRKVV-WGTADIMIGFARGAHGDSYPFDGPGN---TLAHAFAPGT 90
Query: 147 -TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS--------- 196
G H+D DE W G+ G T+ + S + ++ V++ +
Sbjct: 91 GLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNF 150
Query: 197 -LQGDDIQGIKALY 209
L DDI+GI+ LY
Sbjct: 151 KLSQDDIKGIQKLY 164
>pdb|2D1O|A Chain A, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1O|B Chain B, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
Length = 171
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 35 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGN---VLAHAYAPGP 90
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S ++ P +
Sbjct: 91 GINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLY------HSL 144
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 145 TDLTRFRLSQDDINGIQSLY 164
>pdb|2JNP|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|2JT5|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (mmp-3)
In The Presence Of
N-hydroxy-2-[n-(2-hydroxyethyl)biphenyl-4- Sulfonamide]
Hydroxamic Acid (mlc88)
pdb|2JT6|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of 3-4'-Cyanobyphenyl-4-Yloxy)-N-
Hdydroxypropionamide (Mmp-3 Inhibitor Vii)
Length = 161
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 30 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGN---VLAHAYAPGP 85
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S ++ P +
Sbjct: 86 GINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLY------HSL 139
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 140 TDLTRFRLSQDDINGIQSLY 159
>pdb|1QIA|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 162
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 29 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGN---VLAHAYAPGP 84
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S ++ P +
Sbjct: 85 GINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLY------HSL 138
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 139 TDLTRFRLSQDDINGIQSLY 158
>pdb|1B8Y|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexed With Non-Peptide Inhibitors: Implications For
Inhibitor Selectivity
pdb|3OHL|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4-
Methoxy-N-(Pyridine-3-
Ylmethyl)phenylsulfonamido)acetamide
Length = 167
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 35 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGN---VLAHAYAPGP 90
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S ++ P +
Sbjct: 91 GINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLY------HSL 144
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 145 TDLTRFRLSQDDINGIQSLY 164
>pdb|1BIW|A Chain A, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BIW|B Chain B, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BQO|A Chain A, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1BQO|B Chain B, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1B3D|A Chain A, Stromelysin-1
pdb|1B3D|B Chain B, Stromelysin-1
pdb|1CQR|A Chain A, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1CQR|B Chain B, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1C3I|A Chain A, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1C3I|B Chain B, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1D8M|A Chain A, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D8M|B Chain B, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D7X|A Chain A, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D7X|B Chain B, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D8F|A Chain A, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D8F|B Chain B, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D5J|A Chain A, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1D5J|B Chain B, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1G49|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G49|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G05|A Chain A, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1G05|B Chain B, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1HY7|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1HY7|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1BM6|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Stromelysin-1 Complexed To A Potent Non-Peptidic
Inhibitor, Nmr, 20 Structures
pdb|2SRT|A Chain A, Catalytic Domain Of Human Stromelysin-1 At Ph 5.5 And 40oc
Complexed With Inhibitor
pdb|1SLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-702,842
pdb|4DPE|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4DPE|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4JA1|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
pdb|4JA1|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
Length = 173
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 35 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGN---VLAHAYAPGP 90
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S ++ P +
Sbjct: 91 GINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLY------HSL 144
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 145 TDLTRFRLSQDDINGIQSLY 164
>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 174
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V++A W F K+ + ADI I F H TLAHAFAP
Sbjct: 36 VSKALNMWGKEIPLHFRKVV-WGTADIMIGFARGAHGDSYPFDGPGN---TLAHAFAPGT 91
Query: 147 -TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS--------- 196
G H+D DE W G+ G T+ + S + ++ V++ +
Sbjct: 92 GLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNF 151
Query: 197 -LQGDDIQGIKALY 209
L DDI+GI+ LY
Sbjct: 152 KLSQDDIKGIQKLY 165
>pdb|1GKC|A Chain A, Mmp9-inhibitor Complex
pdb|1GKC|B Chain B, Mmp9-inhibitor Complex
Length = 163
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 15/131 (11%)
Query: 90 ARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP--- 146
ARAF W+A T F+++ ADI I F H LAHAF P
Sbjct: 37 ARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGKDG---LLAHAFPPGPG 92
Query: 147 TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLW--------RSLQ 198
G H+D DE W++G QG L + + + ++ +++ L
Sbjct: 93 IQGDAHFDDDELWSLGKGQGYSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGPPLH 152
Query: 199 GDDIQGIKALY 209
DD+ GI+ LY
Sbjct: 153 KDDVNGIRHLY 163
>pdb|1UMS|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Ensemble Of 20 Structures
pdb|1UMT|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Average Of 20 Structures Minimized With Restraints
Length = 174
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 35 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGN---VLAHAYAPGP 90
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S ++ P +
Sbjct: 91 GINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLY------HSL 144
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 145 TDLTRFRLSQDDINGIQSLY 164
>pdb|3OHO|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4- Methylphenylsulfonamido)acetamide
Length = 169
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 35 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGN---VLAHAYAPGP 90
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S ++ P +
Sbjct: 91 GINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLY------HSL 144
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 145 TDLTRFRLSQDDINGIQSLY 164
>pdb|1C8T|A Chain A, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
pdb|1C8T|B Chain B, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
Length = 167
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 32 VEKALKVWEEVTPLTFSRLYE-GEADIMISFAVREHGDFYPFDGPGN---VLAHAYAPGP 87
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S ++ P +
Sbjct: 88 GINGDAHFDDDEQWTKDTTGTNLFLVAAHQIGHSLGLFHSANTEALMYPLY------HSL 141
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 142 TDLTRFRLSQDDINGIQSLY 161
>pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex
pdb|1GKD|B Chain B, Mmp9 Active Site Mutant-Inhibitor Complex
Length = 163
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 15/131 (11%)
Query: 90 ARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP--- 146
ARAF W+A T F+++ ADI I F H LAHAF P
Sbjct: 37 ARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGKDG---LLAHAFPPGPG 92
Query: 147 TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLW--------RSLQ 198
G H+D DE W++G QG L + + + ++ +++ L
Sbjct: 93 IQGDAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGPPLH 152
Query: 199 GDDIQGIKALY 209
DD+ GI+ LY
Sbjct: 153 KDDVNGIRHLY 163
>pdb|1MMP|A Chain A, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMP|B Chain B, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMQ|A Chain A, Matrilysin Complexed With Hydroxamate Inhibitor
pdb|1MMR|A Chain A, Matrilysin Complexed With Sulfodiimine Inhibitor
Length = 170
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V++A W F K+ + ADI I F H TLAHAFAP
Sbjct: 35 VSKALNMWGKEIPLHFRKVV-WGTADIMIGFARGAHGDSYPFDGPGN---TLAHAFAPGT 90
Query: 147 -TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS--------- 196
G H+D DE W G+ G T+ + S + ++ V++ +
Sbjct: 91 GLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNF 150
Query: 197 -LQGDDIQGIKALY 209
L DDI+GI+ LY
Sbjct: 151 KLSQDDIKGIQKLY 164
>pdb|2OVX|A Chain A, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVX|B Chain B, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVZ|A Chain A, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OVZ|B Chain B, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OW0|A Chain A, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW0|B Chain B, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW1|A Chain A, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW1|B Chain B, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW2|A Chain A, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
pdb|2OW2|B Chain B, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
Length = 159
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 15/131 (11%)
Query: 90 ARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP--- 146
ARAF W+A T F+++ ADI I F H LAHAF P
Sbjct: 33 ARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGKDG---LLAHAFPPGPG 88
Query: 147 TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLW--------RSLQ 198
G H+D DE W++G QG L + + + ++ +++ L
Sbjct: 89 IQGDAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGPPLH 148
Query: 199 GDDIQGIKALY 209
DD+ GI+ LY
Sbjct: 149 KDDVNGIRHLY 159
>pdb|2Y6C|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 165
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V++A W F K+ + ADI I F H TLAHAFAP
Sbjct: 36 VSKALNMWGKEIPLHFRKVV-WGTADIMIGFARGAHGDSYPFDGPGN---TLAHAFAPGT 91
Query: 147 -TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS--------- 196
G H+D DE W G+ G T+ + S + ++ V++ +
Sbjct: 92 GLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNF 151
Query: 197 -LQGDDIQGIKALY 209
L DDI+GI+ LY
Sbjct: 152 KLSQDDIKGIQKLY 165
>pdb|1JK3|A Chain A, Crystal Structure Of Human Mmp-12 (Macrophage Elastase) At
True Atomic Resolution
Length = 158
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDFHAFDGKGGILA 77
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 78 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHAIGHSLGLGHSSDPKAVMFPTYK 136
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 137 YVDINTFRLSADDIRGIQSLY 157
>pdb|2POJ|A Chain A, Nmr Solution Structure Of The Inhibitor-Free State Of
Macrophage Metalloelastase (Mmp-12)
Length = 164
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 28 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDFHAFDGKGGILA 83
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 84 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHAIGHSLGLGHSSDPKAVMFPTYK 142
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 143 YVDINTFRLSADDIRGIQSLY 163
>pdb|2W0D|A Chain A, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|B Chain B, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|C Chain C, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|D Chain D, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|3UVC|A Chain A, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
pdb|3UVC|B Chain B, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
Length = 164
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 23 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDFHAFDGKGGILA 78
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 79 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHAIGHSLGLGHSSDPKAVMFPTYK 137
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 138 YVDINTFRLSADDIRGIQSLY 158
>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh
Length = 160
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V A Q W++ F +I ADI ISFE+ +H TLAHAFAP
Sbjct: 30 VEMALQAWSSAVPLSFVRINS-GEADIMISFENGDHGDSYPFDGPRG---TLAHAFAPGE 85
Query: 147 -TNGRFHYDADEPWAVG---------AVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS 196
G H+D E W +G A +L + PS +
Sbjct: 86 GLGGDTHFDNAEKWTMGTNGFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYKNPYGFH 145
Query: 197 LQGDDIQGIKALY 209
L DD++GI+ALY
Sbjct: 146 LPKDDVKGIQALY 158
>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470c
Length = 152
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 17 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDDHAFDGKGGILA 72
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 73 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 131
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 132 YVDINTFRLSADDIRGIQSLY 152
>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To
Elicit Structural Information
pdb|2KRJ|A Chain A, High-Resolution Solid-State Nmr Structure Of A 17.6 Kda
Prot
Length = 152
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 16 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDDHAFDGKGGILA 71
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 72 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 130
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 131 YVDINTFRLSADDIRGIQSLY 151
>pdb|1OS2|A Chain A, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|B Chain B, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|C Chain C, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|D Chain D, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|E Chain E, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|F Chain F, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS9|A Chain A, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|B Chain B, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|C Chain C, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|D Chain D, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|E Chain E, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|F Chain F, Binary Enzyme-Product Complexes Of Human Mmp12
Length = 165
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI + ADI + F H LA
Sbjct: 24 REDVDYAIRKAFQVWSNVTPLKFSKI-NTGMADILVVFARGAH---GDDHAFDGKGGILA 79
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 80 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 138
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 139 YVDINTFRLSADDIRGIQSLY 159
>pdb|3F15|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(S)-N-(2,3-Dihydroxypropyl)-4-
Methoxy-N-(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F16|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(R)-N-(3-Hydroxy-1-Nitroso-1-
Oxopropan-2-Yl)-4-Methoxybenzenesulfonamide
pdb|3F17|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Biphenyl-4-Sulfonamide
pdb|3F18|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
4-Fluoro-N-(2-Hydroxyethyl)-N-
(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F19|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor 4-Fluoro-N-(2-Nitroso-2-
Oxoethyl)benzenesulfonamide
pdb|3F1A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Benzenesulfonamide
pdb|3EHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(Biphenyl-4-
Ylsulfonamido)-4-Methylpentanoic Acid
pdb|3EHY|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(4-
Methoxyphenylsulfonamido)propanoic Acid
pdb|3LKA|A Chain A, Catalytic Domain Of Human Mmp-12 Complexed With Hydroxamic
Acid And Paramethoxy-Sulfonyl Amide
pdb|3NX7|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-(2-Hydroxyethyl)4-
Methoxyphenylsulfonamido)acetamide
pdb|3LK8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
Paramethoxy-Sulfonyl-Glycine Hydroxamate
pdb|3N2U|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(4-Methoxy-N(2-(3,4,5-Trihydroxy-6-
(Hydroxymethyl)tetrahydro-2h-Pyran-2-
Yloxy)ethyl)phenylsulfonamido) Acetamide
pdb|3N2V|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-Hydroxyethyl)biphenyl-4-
Ylsulfonamido)acetamide
pdb|3RTS|A Chain A, Human Mmp-12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2- Phenylethylsulfonamido)acetamide
pdb|3RTT|A Chain A, Human Mmp-12 Catalytic Domain In Complex
With(R)-N-Hydroxy-1-
(Phenethylsulfonyl)pyrrolidine-2-Carboxamide
pdb|4GUY|A Chain A, Human Mmp12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2-(4-
Methoxyphenyl)ethylsulfonamido)acetamide
Length = 158
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDDHAFDGKGGILA 77
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 78 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 136
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 137 YVDINTFRLSADDIRGIQSLY 157
>pdb|1RMZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor Nngh At 1.3 A Resolution
pdb|2HU6|A Chain A, Crystal Structure Of Human Mmp-12 In Complex With
Acetohydroxamic Acid And A Bicyclic Inhibitor
pdb|2OXU|A Chain A, Uninhibited Form Of Human Mmp-12
pdb|2OXW|A Chain A, Human Mmp-12 Complexed With The Peptide Iag
pdb|2OXZ|A Chain A, Human Mmp-12 In Complex With Two Peptides Pqg And Iag
pdb|1YCM|A Chain A, Solution Structure Of Matrix Metalloproteinase 12 (Mmp12)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|1Z3J|A Chain A, Solution Structure Of Mmp12 In The Presence Of
N-Isobutyl-N- 4-Methoxyphenylsulfonyl]glycyl Hydroxamic
Acid (Nngh)
pdb|1Y93|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With Acetohydroxamic Acid At Atomic Resolution
pdb|3LIK|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIL|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIR|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LJG|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3TS4|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|3TSK|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4EFS|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4GQL|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470.1
pdb|4GR0|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470b
pdb|4GR3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470a
Length = 159
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 23 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDDHAFDGKGGILA 78
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 79 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 137
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 138 YVDINTFRLSADDIRGIQSLY 158
>pdb|2K2G|A Chain A, Solution Structure Of The Wild-Type Catalytic Domain Of
Human Matrix Metalloproteinase 12 (Mmp-12) In Complex
With A Tight-Binding Inhibitor
Length = 165
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 29 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDFHAFDGKGGILA 84
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 85 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 143
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 144 YVDINTFRLSADDIRGIQSLY 164
>pdb|2Z2D|A Chain A, Solution Structure Of Human Macrophage Elastase (Mmp-12)
Catalytic Domain Complexed With A Gamma-Keto Butanoic
Acid Inhibitor
Length = 164
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 28 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDFHAFDGKGGILA 83
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 84 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 142
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 143 YVDINTFRLSADDIRGIQSLY 163
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T F+K+ + ADI ISF +H LA
Sbjct: 28 RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDH---RDNSPFDGPGGNLA 83
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + + + + S + ++ +++ S
Sbjct: 84 HAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVA-AHALGHSLGLSHSTDIGALMYPSYT 142
Query: 197 ------LQGDDIQGIKALY 209
L DDI GI+A+Y
Sbjct: 143 FSGDVQLAQDDIDGIQAIY 161
>pdb|1JIZ|A Chain A, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
pdb|1JIZ|B Chain B, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
Length = 166
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 29 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDFHAFDGKGGILA 84
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 85 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 143
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 144 YVDINTFRLSADDIRGIQSLY 164
>pdb|1UTT|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-
(1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl)ethyl-4-
(4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobutanoic Acid
pdb|1UTZ|A Chain A, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
pdb|1UTZ|B Chain B, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
Length = 159
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDFHAFDGKGGILA 77
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 78 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 136
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 137 YVDINTFRLSADDIRGIQSLY 157
>pdb|2WO8|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
Length = 164
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 23 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDFHAFDGKGGILA 78
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 79 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 137
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 138 YVDINTFRLSADDIRGIQSLY 158
>pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex
pdb|1UEA|C Chain C, Mmp-3TIMP-1 Complex
Length = 173
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 29/140 (20%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP-- 146
V +A + W T FS++ + ADI ISF R H LAHA+AP
Sbjct: 35 VEKALKVWEEVTPLTFSRLYE-GEADIXISFAVREHGDFYPFDGPGN---VLAHAYAPGP 90
Query: 147 -TNGRFHYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
NG H+D DE W +G G F S + P +
Sbjct: 91 GINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSANTEALXYPLY------HSL 144
Query: 191 TVLWR-SLQGDDIQGIKALY 209
T L R L DDI GI++LY
Sbjct: 145 TDLTRFRLSQDDINGIQSLY 164
>pdb|1ROS|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
pdb|1ROS|B Chain B, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
Length = 163
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDFHAFDGKGGILA 77
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 78 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 136
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 137 YVDINTFRLSADDIRGIQSLY 157
>pdb|1CGF|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
pdb|1CGF|B Chain B, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 162
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T F+K+ + ADI ISF +H LA
Sbjct: 26 RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDH---RDNSPFDGPGGNLA 81
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + + + + S + ++ +++ S
Sbjct: 82 HAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVA-AHELGHSLGLSHSTDIGALMYPSYT 140
Query: 197 ------LQGDDIQGIKALY 209
L DDI GI+A+Y
Sbjct: 141 FSGDVQLAQDDIDGIQAIY 159
>pdb|2J0T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
Length = 170
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T F+K+ + ADI ISF +H LA
Sbjct: 28 RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDH---RDNSPFDGPGGNLA 83
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + + + + S + ++ +++ S
Sbjct: 84 HAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVA-AHELGHSLGLSHSTDIGALMYPSYT 142
Query: 197 ------LQGDDIQGIKALY 209
L DDI GI+A+Y
Sbjct: 143 FSGDVQLAQDDIDGIQAIY 161
>pdb|966C|A Chain A, Crystal Structure Of Fibroblast Collagenase-1 Complexed To
A Diphenyl-Ether Sulphone Based Hydroxamic Acid
Length = 157
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T F+K+ + ADI ISF +H LA
Sbjct: 20 RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDH---RDNSPFDGPGGNLA 75
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + + + + S + ++ +++ S
Sbjct: 76 HAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVA-AHELGHSLGLSHSTDIGALMYPSYT 134
Query: 197 ------LQGDDIQGIKALY 209
L DDI GI+A+Y
Sbjct: 135 FSGDVQLAQDDIDGIQAIY 153
>pdb|3SHI|A Chain A, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|G Chain G, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|M Chain M, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
Length = 156
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T F+K+ + ADI ISF +H LA
Sbjct: 22 RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDH---RDNSPFDGPGGNLA 77
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + + + + S + ++ +++ S
Sbjct: 78 HAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVA-AHELGHSLGLSHSTDIGALMYPSYT 136
Query: 197 ------LQGDDIQGIKALY 209
L DDI GI+A+Y
Sbjct: 137 FSGDVQLAQDDIDGIQAIY 155
>pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, Minimized Average
Structure
pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, 30 Structures
pdb|1AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, 30 Structures
pdb|1HFC|A Chain A, 1.56 Angstrom Structure Of Mature Truncated Human
Fibroblast Collagenase
pdb|2AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, Minimized Average Structure
pdb|2TCL|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T F+K+ + ADI ISF +H LA
Sbjct: 27 RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDH---RDNSPFDGPGGNLA 82
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + + + + S + ++ +++ S
Sbjct: 83 HAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVA-AHELGHSLGLSHSTDIGALMYPSYT 141
Query: 197 ------LQGDDIQGIKALY 209
L DDI GI+A+Y
Sbjct: 142 FSGDVQLAQDDIDGIQAIY 160
>pdb|1CGE|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 168
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T F+K+ + ADI ISF +H LA
Sbjct: 26 RADVDHAIEKAFQLWSNVTPLTFTKVSE-GQADIMISFVRGDH---RDNSPFDGPGGNLA 81
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + + + + S + ++ +++ S
Sbjct: 82 HAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVA-AHELGHSLGLSHSTDIGALMYPSYT 140
Query: 197 ------LQGDDIQGIKALY 209
L DDI GI+A+Y
Sbjct: 141 FSGDVQLAQDDIDGIQAIY 159
>pdb|1CGL|A Chain A, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
pdb|1CGL|B Chain B, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 16/139 (11%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T F+K+ + ADI ISF +H LA
Sbjct: 27 RADVDHAIEKAFQLWSDVTPLTFTKVSE-GQADIMISFVRGDH---RDNSPFDGPGGNLA 82
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + + + + S + ++ +++ S
Sbjct: 83 HAFDPGPGIGGDAHFDEDERWTNNFREYNLHRVA-AHELGHSLGLSHSTDIGALMYPSYT 141
Query: 197 ------LQGDDIQGIKALY 209
L DDI GI+A+Y
Sbjct: 142 FSGDVQLAQDDIDGIQAIY 160
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 82 RGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
R D + +AFQ W+ T +FSKI ADI + F H LA
Sbjct: 22 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAH---GDDHAFDGKGGILA 77
Query: 142 HAFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWRS-- 196
HAF P G H+D DE W + G L + I S + ++ V++ +
Sbjct: 78 HAFGPGSGIGGDAHFDEDEFWTTHS-GGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYK 136
Query: 197 --------LQGDDIQGIKALY 209
L DDI+GI++LY
Sbjct: 137 YVDINTFRLSADDIRGIQSLY 157
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 20/142 (14%)
Query: 81 TRGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTL 140
+R D + +AFQ W+ + F+K+ + ADI ISF +H L
Sbjct: 27 SREDVDRAIEKAFQLWSNVSPLTFTKVSE-GQADIMISFVRGDH---RDNSPFDGPGGNL 82
Query: 141 AHAFAP---TNGRFHYDADEPWA-----VGAVQGAFDSLKDTYIIAPSTAV-----QNAP 187
AHAF P G H+D DE W + A L + ++ ST + N
Sbjct: 83 AHAFQPGPGIGGDAHFDEDERWTKNFRDYNLYRVAAHELGHSLGLSHSTDIGALMYPNYI 142
Query: 188 CTATVLWRSLQGDDIQGIKALY 209
T V L DDI GI+A+Y
Sbjct: 143 YTGDV---QLSQDDIDGIQAIY 161
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 91 RAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP---T 147
+AF+ W+ T F++I D ADI ISF ++ H LAHAF P
Sbjct: 37 KAFKVWSDVTPLNFTRIYD-GTADIMISFGTKEHGDFYPFDGPSG---LLAHAFPPGPNY 92
Query: 148 NGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWR----------SL 197
G H+D DE W + +G + + + S + ++ +++ L
Sbjct: 93 GGDAHFDDDETW-TSSSKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFML 151
Query: 198 QGDDIQGIKALY 209
DD+QGI+ LY
Sbjct: 152 PDDDVQGIQFLY 163
>pdb|1HV5|A Chain A, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|B Chain B, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|C Chain C, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|D Chain D, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|E Chain E, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|F Chain F, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
Length = 165
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 53/133 (39%), Gaps = 15/133 (11%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAPT- 147
VA A Q W+ T F+++ + ADI I F H LAHAF P
Sbjct: 34 VAEALQVWSEVTPLTFTEVHE-GRADIMIDFARYWHGDNLPFDGPGG---ILAHAFFPKT 89
Query: 148 --NGRFHYDADEPWAVGAVQG------AFDSLKDTYIIAPSTAVQ--NAPCTATVLWRSL 197
G H+D DE W +G QG A + +TA + +P SL
Sbjct: 90 HREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTFRYPLSL 149
Query: 198 QGDDIQGIKALYN 210
DD +GI+ LY
Sbjct: 150 SPDDRRGIQHLYG 162
>pdb|456C|A Chain A, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|456C|B Chain B, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|830C|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|830C|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|1YOU|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
pdb|1YOU|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
Length = 168
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 91 RAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP---T 147
+AF+ W+ T F+++ D ADI ISF + H LAHAF P
Sbjct: 37 KAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDFYPFDGPSG---LLAHAFPPGPNY 92
Query: 148 NGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWR----------SL 197
G H+D DE W + +G L + S + ++ +++ L
Sbjct: 93 GGDAHFDDDETW-TSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFML 151
Query: 198 QGDDIQGIKALY 209
DD+QGI++LY
Sbjct: 152 PDDDVQGIQSLY 163
>pdb|2D1N|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1N|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
Length = 166
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 91 RAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP---T 147
+AF+ W+ T F+++ D ADI ISF + H LAHAF P
Sbjct: 37 KAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDFYPFDGPSG---LLAHAFPPGPNY 92
Query: 148 NGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWR----------SL 197
G H+D DE W + +G L + S + ++ +++ L
Sbjct: 93 GGDAHFDDDETW-TSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFML 151
Query: 198 QGDDIQGIKALY 209
DD+QGI++LY
Sbjct: 152 PDDDVQGIQSLY 163
>pdb|3LJZ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|C Chain C, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|D Chain D, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3O2X|A Chain A, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|B Chain B, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|C Chain C, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|D Chain D, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
Length = 164
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 91 RAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP---T 147
+AF+ W+ T F+++ D ADI ISF + H LAHAF P
Sbjct: 37 KAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDFYPFDGPSG---LLAHAFPPGPNY 92
Query: 148 NGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWR----------SL 197
G H+D DE W + +G L + S + ++ +++ L
Sbjct: 93 GGDAHFDDDETW-TSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFML 151
Query: 198 QGDDIQGIKALY 209
DD+QGI++LY
Sbjct: 152 PDDDVQGIQSLY 163
>pdb|3KRY|A Chain A, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|B Chain B, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|C Chain C, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|D Chain D, Crystal Structure Of Mmp-13 In Complex With Sc-78080
Length = 164
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 91 RAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP---T 147
+AF+ W+ T F+++ D ADI ISF + H LAHAF P
Sbjct: 37 KAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDFYPFDGPSG---LLAHAFPPGPNY 92
Query: 148 NGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWR----------SL 197
G H+D DE W + +G L + S + ++ +++ L
Sbjct: 93 GGDAHFDDDETW-TSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFML 151
Query: 198 QGDDIQGIKALY 209
DD+QGI++LY
Sbjct: 152 PDDDVQGIQSLY 163
>pdb|1EUB|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Collagenase-3 (Mmp-13) Complexed To A Potent
Non-Peptidic Sulfonamide Inhibitor
pdb|1XUC|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUC|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|3ELM|A Chain A, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3ELM|B Chain B, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3I7G|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7G|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|2YIG|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|2YIG|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|3ZXH|A Chain A, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
pdb|3ZXH|B Chain B, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
Length = 171
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 91 RAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP---T 147
+AF+ W+ T F+++ D ADI ISF + H LAHAF P
Sbjct: 37 KAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDFYPFDGPSG---LLAHAFPPGPNY 92
Query: 148 NGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWR----------SL 197
G H+D DE W + +G L + S + ++ +++ L
Sbjct: 93 GGDAHFDDDETW-TSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFML 151
Query: 198 QGDDIQGIKALY 209
DD+QGI++LY
Sbjct: 152 PDDDVQGIQSLY 163
>pdb|1FLS|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1FM1|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1ZTQ|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|2E2D|A Chain A, Flexibility And Variability Of Timp Binding: X-Ray
Structure Of The Complex Between Collagenase-3MMP-13 And
Timp-2
pdb|2PJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
Length = 165
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 91 RAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP---T 147
+AF+ W+ T F+++ D ADI ISF + H LAHAF P
Sbjct: 37 KAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDFYPFDGPSG---LLAHAFPPGPNY 92
Query: 148 NGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWR----------SL 197
G H+D DE W + +G L + S + ++ +++ L
Sbjct: 93 GGDAHFDDDETW-TSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFML 151
Query: 198 QGDDIQGIKALY 209
DD+QGI++LY
Sbjct: 152 PDDDVQGIQSLY 163
>pdb|4A7B|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|4A7B|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|3TVC|A Chain A, Human Mmp13 In Complex With L-Glutamate Motif Inhibitor
Length = 169
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 91 RAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP---T 147
+AF+ W+ T F+++ D ADI ISF + H LAHAF P
Sbjct: 37 KAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDFYPFDGPSG---LLAHAFPPGPNY 92
Query: 148 NGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWR----------SL 197
G H+D DE W + +G L + S + ++ +++ L
Sbjct: 93 GGDAHFDDDETW-TSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFML 151
Query: 198 QGDDIQGIKALY 209
DD+QGI++LY
Sbjct: 152 PDDDVQGIQSLY 163
>pdb|3KEC|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEC|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEJ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEJ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
Length = 167
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 91 RAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP---T 147
+AF+ W+ T F+++ D ADI ISF + H LAHAF P
Sbjct: 37 KAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDFYPFDGPSG---LLAHAFPPGPNY 92
Query: 148 NGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWR----------SL 197
G H+D DE W + +G L + S + ++ +++ L
Sbjct: 93 GGDAHFDDDETW-TSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFML 151
Query: 198 QGDDIQGIKALY 209
DD+QGI++LY
Sbjct: 152 PDDDVQGIQSLY 163
>pdb|2OW9|A Chain A, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OW9|B Chain B, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OZR|A Chain A, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|B Chain B, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|C Chain C, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|D Chain D, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|E Chain E, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|F Chain F, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|G Chain G, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|H Chain H, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
Length = 170
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 91 RAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAP---T 147
+AF+ W+ T F+++ D ADI ISF + H LAHAF P
Sbjct: 40 KAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDFYPFDGPSG---LLAHAFPPGPNY 95
Query: 148 NGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNAPCTATVLWR----------SL 197
G H+D DE W + +G L + S + ++ +++ L
Sbjct: 96 GGDAHFDDDETW-TSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFML 154
Query: 198 QGDDIQGIKALY 209
DD+QGI++LY
Sbjct: 155 PDDDVQGIQSLY 166
>pdb|1Q3A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
Length = 165
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 27/139 (19%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAPTN 148
+ +A + W T FS++ + ADI ISF + H +LAHA+ P
Sbjct: 35 IEKALKVWEEVTPLTFSRLYE-GEADIMISFAVKEHGDNYSFDGPGH---SLAHAYPPGP 90
Query: 149 GRF---HYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQNAPCTA 190
G + H+D DE W +G G F S ++ P + N+ T
Sbjct: 91 GLYGDIHFDDDEKWTEDASGTNLFLVAAHELGHSLGLFHSANTEALMYP---LYNS-FTE 146
Query: 191 TVLWRSLQGDDIQGIKALY 209
+R L DD+ GI++LY
Sbjct: 147 LAQFR-LSQDDVNGIQSLY 164
>pdb|3V96|B Chain B, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 165
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 28/145 (19%)
Query: 84 DAI-TPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAH 142
DA+ + + +A + W T FS++ + ADI ISF + H +LAH
Sbjct: 29 DAVDSAIEKALKVWEEVTPLTFSRLYE-GEADIMISFAVKEHGDFYSFDGPGH---SLAH 84
Query: 143 AFAPTNGRF---HYDADEPWA---------------VGAVQGAFDSLKDTYIIAPSTAVQ 184
A+ P G + H+D DE W +G G F S ++ P +
Sbjct: 85 AYPPGPGLYGDIHFDDDEKWTEDASGTNLFLVAAHELGHSLGLFHSANTEALMYP---LY 141
Query: 185 NAPCTATVLWRSLQGDDIQGIKALY 209
N+ T +R L DD+ GI++LY
Sbjct: 142 NS-FTELAQFR-LSQDDVNGIQSLY 164
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAPTN 148
+ AF W+ + F ++ + ADIKI +E NH LAHAF P
Sbjct: 33 IRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNH---GDGYPFDGNTGILAHAFYPPP 89
Query: 149 ------GRFHYDADEPWAV 161
G H+D DE W++
Sbjct: 90 AGGNYAGHLHFDDDENWSI 108
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 89 VARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHXXXXXXXXXXXXXXTLAHAFAPTN 148
+ AF W+ + F ++ + ADIKI +E NH LAHAF P
Sbjct: 33 IRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNH---GDGYPFDGNTGILAHAFYPPP 89
Query: 149 ------GRFHYDADEPWAV 161
G H+D DE W++
Sbjct: 90 AGGNYAGHLHFDDDENWSI 108
>pdb|1RM8|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-16MT3-
Mmp: Characterization Of Mt-Mmp Specific Features
Length = 169
Score = 33.5 bits (75), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 53/142 (37%), Gaps = 24/142 (16%)
Query: 89 VARAFQTWAANTQFRF-----SKIEDFA-GADIKISFESRNHXXXXXXXXXXXXXXTLAH 142
+ RAF W T F S++E+ DI I F S H LAH
Sbjct: 29 IRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGF---LAH 85
Query: 143 AFAP---TNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAV----QNAPCTATVLWR 195
A+ P G H+D+DEPW +G + L + A+ N P +
Sbjct: 86 AYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFY 145
Query: 196 --------SLQGDDIQGIKALY 209
L DD+QGI+ +Y
Sbjct: 146 QYMETDNFKLPNDDLQGIQKIY 167
>pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
pdb|1BUV|M Chain M, Crystal Structure Of The Mt1-Mmp-Timp-2 Complex
Length = 174
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 89 VARAFQTWAANTQFRFSKIE-------DFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
+ +AF+ W + T RF ++ ADI I F H LA
Sbjct: 31 IRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGF---LA 87
Query: 142 HAFAP---TNGRFHYDADEPWAV 161
HA+ P G H+D+ EPW V
Sbjct: 88 HAYFPGPNIGGDTHFDSAEPWTV 110
>pdb|3MA2|D Chain D, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
pdb|3MA2|A Chain A, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
Length = 181
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 89 VARAFQTWAANTQFRFSKIE-------DFAGADIKISFESRNHXXXXXXXXXXXXXXTLA 141
+ +AF+ W + T RF ++ ADI I F H LA
Sbjct: 33 IRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFDGEGGF---LA 89
Query: 142 HAFAP---TNGRFHYDADEPWAV 161
HA+ P G H+D+ EPW V
Sbjct: 90 HAYFPGPNIGGDTHFDSAEPWTV 112
>pdb|3BLZ|A Chain A, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Sbal_0622) From Shewanella Baltica Os155 At
1.75 A Resolution
pdb|3BLZ|B Chain B, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Sbal_0622) From Shewanella Baltica Os155 At
1.75 A Resolution
pdb|3BLZ|C Chain C, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Sbal_0622) From Shewanella Baltica Os155 At
1.75 A Resolution
pdb|3BLZ|D Chain D, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Sbal_0622) From Shewanella Baltica Os155 At
1.75 A Resolution
pdb|3BLZ|E Chain E, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Sbal_0622) From Shewanella Baltica Os155 At
1.75 A Resolution
pdb|3BLZ|F Chain F, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Sbal_0622) From Shewanella Baltica Os155 At
1.75 A Resolution
pdb|3BLZ|G Chain G, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Sbal_0622) From Shewanella Baltica Os155 At
1.75 A Resolution
pdb|3BLZ|H Chain H, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Sbal_0622) From Shewanella Baltica Os155 At
1.75 A Resolution
pdb|3BLZ|I Chain I, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Sbal_0622) From Shewanella Baltica Os155 At
1.75 A Resolution
pdb|3BLZ|J Chain J, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Sbal_0622) From Shewanella Baltica Os155 At
1.75 A Resolution
pdb|3BLZ|K Chain K, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Sbal_0622) From Shewanella Baltica Os155 At
1.75 A Resolution
pdb|3BLZ|L Chain L, Crystal Structure Of A Ntf2-Like Protein Of Unknown
Function (Sbal_0622) From Shewanella Baltica Os155 At
1.75 A Resolution
Length = 128
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 143 AFAPTNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPS--TAVQNAPCTATVLWRSLQGD 200
AF+ F D D G +QG FD + + + +P A+ T + D
Sbjct: 36 AFSSQATIFGVDVDNKLTGGPIQGLFDVIDNVFHPSPEAKAAIARIDIVGTAASARIDTD 95
Query: 201 DIQGIK 206
DI G +
Sbjct: 96 DISGFR 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,700,527
Number of Sequences: 62578
Number of extensions: 202098
Number of successful extensions: 424
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 75
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)