Query 039712
Match_columns 211
No_of_seqs 174 out of 984
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 12:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1565 Gelatinase A and relat 100.0 1.4E-51 3E-56 380.0 13.6 188 2-211 57-262 (469)
2 cd04278 ZnMc_MMP Zinc-dependen 100.0 2.6E-30 5.6E-35 207.3 11.7 140 65-210 1-157 (157)
3 PF00413 Peptidase_M10: Matrix 99.9 1E-27 2.2E-32 190.0 9.4 137 65-210 1-154 (154)
4 cd04279 ZnMc_MMP_like_1 Zinc-d 99.8 9.2E-20 2E-24 145.8 8.9 129 71-210 2-156 (156)
5 cd04268 ZnMc_MMP_like Zinc-dep 99.6 1E-16 2.2E-21 128.4 4.3 132 70-209 1-165 (165)
6 smart00235 ZnMc Zinc-dependent 99.6 4.6E-16 9.9E-21 122.0 7.0 129 64-211 3-140 (140)
7 cd04277 ZnMc_serralysin_like Z 99.6 2.4E-15 5.1E-20 123.5 8.9 113 84-210 34-186 (186)
8 cd00203 ZnMc Zinc-dependent me 99.0 1.4E-09 3E-14 86.8 9.2 107 84-209 22-167 (167)
9 cd04276 ZnMc_MMP_like_2 Zinc-d 98.7 5.5E-08 1.2E-12 81.2 7.5 134 70-211 7-197 (197)
10 cd04327 ZnMc_MMP_like_3 Zinc-d 98.7 3.5E-08 7.6E-13 82.0 6.0 66 65-134 2-67 (198)
11 PF01471 PG_binding_1: Putativ 98.5 9.7E-08 2.1E-12 63.6 3.4 29 2-30 29-57 (57)
12 cd04280 ZnMc_astacin_like Zinc 97.1 0.0012 2.7E-08 54.1 6.1 52 71-126 2-53 (180)
13 PF12388 Peptidase_M57: Dual-a 96.9 0.0048 1E-07 52.1 7.8 73 70-153 38-122 (211)
14 PF01400 Astacin: Astacin (Pep 96.5 0.0052 1.1E-07 50.9 5.5 57 65-126 2-58 (191)
15 cd04281 ZnMc_BMP1_TLD Zinc-dep 96.2 0.015 3.3E-07 48.7 6.4 59 63-126 7-65 (200)
16 TIGR02869 spore_SleB spore cor 96.2 0.0053 1.1E-07 51.4 3.6 37 2-39 40-76 (201)
17 PRK10594 murein L,D-transpepti 95.6 0.011 2.5E-07 56.9 3.7 33 1-33 311-343 (608)
18 cd04282 ZnMc_meprin Zinc-depen 94.3 0.15 3.3E-06 43.7 6.7 57 63-126 43-99 (230)
19 COG2989 Uncharacterized protei 93.6 0.072 1.6E-06 50.5 3.7 31 2-32 268-298 (561)
20 KOG3714 Meprin A metalloprotea 89.6 0.85 1.8E-05 42.2 6.1 59 61-122 77-135 (411)
21 cd04283 ZnMc_hatching_enzyme Z 89.1 0.95 2.1E-05 37.4 5.4 38 71-108 4-41 (182)
22 COG3409 Putative peptidoglycan 88.4 0.47 1E-05 37.8 3.1 33 2-34 73-106 (185)
23 PF09374 PG_binding_3: Predict 86.1 0.81 1.7E-05 32.0 2.8 26 5-30 1-30 (72)
24 COG5549 Predicted Zn-dependent 81.7 2.6 5.6E-05 35.8 4.5 110 86-210 106-233 (236)
25 PF02031 Peptidase_M7: Strepto 81.2 4.8 0.0001 31.5 5.5 114 72-210 3-130 (132)
26 PF11350 DUF3152: Protein of u 39.5 22 0.00048 29.9 2.1 109 70-186 28-161 (203)
27 COG5570 Uncharacterized small 32.4 49 0.0011 21.9 2.4 31 2-37 2-32 (57)
28 PF11150 DUF2927: Protein of u 29.6 3.4E+02 0.0074 22.8 10.1 58 63-124 27-87 (213)
29 COG3926 zliS Lysozyme family p 27.2 68 0.0015 27.6 3.1 28 5-32 95-126 (252)
30 PF07236 Phytoreo_S7: Phytoreo 23.9 26 0.00056 32.9 0.0 40 3-42 206-245 (506)
31 cd04273 ZnMc_ADAMTS_like Zinc- 20.8 4.4E+02 0.0095 21.4 6.8 51 87-145 70-120 (207)
No 1
>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]
Probab=100.00 E-value=1.4e-51 Score=380.03 Aligned_cols=188 Identities=38% Similarity=0.598 Sum_probs=167.8
Q ss_pred hHHHHHHHHHHhcCCCccccCCHHHHHHHhCCCCCcccCCCCcccccCccccccccccccccCCCCCCccceeEEeecCC
Q 039712 2 LLESTIKTCQLNFNLKSTGFLDANTVAKMRTPRCGVADIVNGTTRMRSGKKKQQQNNHFHTVSQWPASKFSLTYAFRLGT 81 (211)
Q Consensus 2 ~~~~Ai~~fQ~~~~L~~TG~lD~~T~~~M~~pRCG~pD~~~~~~~~~~~~~~~~~~~~~~~~~kW~~~k~~LTy~i~~~~ 81 (211)
.+++||+.||++++|++||+||.+|+++|++|||||||. ++.++..+.||+ |.+|||+|.+++
T Consensus 57 ~~~~al~~~q~~~~l~~tG~lD~~Tl~~m~~prCgvpd~---------------~~~~~~~~~kW~--k~~lT~ri~n~~ 119 (469)
T KOG1565|consen 57 VLEDALKMMQDFFGLPVTGKLDNATLALMNKPRCGVPDG---------------RYRYFPGKPKWN--KEHLTYRIKNYT 119 (469)
T ss_pred hhHHHHHhhhhhcCccccCCcchhhhhhccCCCcCCCCC---------------ccccCcccCccc--ccccceeccccC
Confidence 578999999999999999999999999999999999991 023456678998 999999999986
Q ss_pred cc----hhHHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCCCCCCCCCCCCCCccccccCC---CCCccccc
Q 039712 82 RG----DAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGDGRPFDGRGGPDGTLAHAFAP---TNGRFHYD 154 (211)
Q Consensus 82 ~~----~~~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd~~~fDG~g~~~g~lAhAf~P---~~G~ihfD 154 (211)
+. ++.+++++||++|++|++|+|+||.....|||+|.|..+.|||++||||+| |+|||||+| .+|++|||
T Consensus 120 ~~l~~~~vr~~~~~Af~~Ws~vtpl~f~e~~~~~~aDi~i~F~~~~h~d~~PFDG~~---g~laHAf~Pg~~~~G~~hfD 196 (469)
T KOG1565|consen 120 PYLPQAEVRCAKSEAFKLWSDVTPLTFQEVKEEGEADIRISFFPGDHGDGFPFDGPG---GVLAHAFFPGPGIGGDLHFD 196 (469)
T ss_pred CCCCHHHHHHHHHHHHhhcccCCCCccccCCCCCCCceeeeeeccCCCCCCcccCCC---CceecccCCCCCCCCccccC
Confidence 43 455667999999999999999999975699999999999999999999999 999999999 67899999
Q ss_pred CCCCcccCCCCCceeeeeEE-------eeccCCCCCCCC---CcccCCCCC-CCCHHHHHHHHHhhCC
Q 039712 155 ADEPWAVGAVQGAFDSLKDT-------YIIAPSTAVQNA---PCTATVLWR-SLQGDDIQGIKALYNV 211 (211)
Q Consensus 155 ~de~Wt~~~~~~~~~l~~Va-------LGL~HS~~~~~s---p~y~~~~~~-~L~~dDi~~Iq~LYG~ 211 (211)
+||.|+.+ ...++||+.|| |||+|| ++++| |+|++.... .|+.|||.|||.|||.
T Consensus 197 ~dE~Wt~~-~~~g~~l~~Va~HEiGH~LGL~HS-~~~~aiM~P~y~~~~~~~~L~~DDv~giq~lYG~ 262 (469)
T KOG1565|consen 197 KDETWTYG-DSNGVDLFLVAAHEIGHALGLGHS-SDPDAIMYPFYQPDSGNFDLSQDDVRGIQHLYGG 262 (469)
T ss_pred cccceecc-CCccchhHHHhhhhcccccccCCC-CCcccccccccccCCCCcccChhhhhhhHHHhCC
Confidence 99999997 33589999997 999999 99999 899862223 8999999999999994
No 2
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=99.97 E-value=2.6e-30 Score=207.26 Aligned_cols=140 Identities=41% Similarity=0.693 Sum_probs=120.2
Q ss_pred CCCCCccceeEEeecCCc----chhHHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCCCCCCCCCCCCCCcc
Q 039712 65 QWPASKFSLTYAFRLGTR----GDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGDGRPFDGRGGPDGTL 140 (211)
Q Consensus 65 kW~~~k~~LTy~i~~~~~----~~~~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd~~~fDG~g~~~g~l 140 (211)
||+ |+.|||+|.+... ...+++|++||+.|+++++|+|+|+.....|||+|.|....|+|+++|||++ |+|
T Consensus 1 kW~--~~~itY~i~~~~~~~~~~~~~~~i~~A~~~W~~~~~l~F~e~~~~~~adi~I~~~~~~~~~~~~~~~~~---g~l 75 (157)
T cd04278 1 KWS--KTNLTYRILNYPPDLPRDDVRRAIARAFRVWSDVTPLTFREVTSGQEADIRISFARGNHGDGYPFDGPG---GTL 75 (157)
T ss_pred CCC--CCceeEEEECCCCCCCHHHHHHHHHHHHHHHHhhcCceeEEcccCCCCCEEEEEeecccCCCCCCCCCc---ccc
Confidence 698 9999999987643 2566778999999999999999999876689999999999999999999999 999
Q ss_pred ccccCC--CCCcccccCCCCcccCCCCCceeeeeEE-------eeccCCCCCCCC---CcccCCC-CCCCCHHHHHHHHH
Q 039712 141 AHAFAP--TNGRFHYDADEPWAVGAVQGAFDSLKDT-------YIIAPSTAVQNA---PCTATVL-WRSLQGDDIQGIKA 207 (211)
Q Consensus 141 AhAf~P--~~G~ihfD~de~Wt~~~~~~~~~l~~Va-------LGL~HS~~~~~s---p~y~~~~-~~~L~~dDi~~Iq~ 207 (211)
|||++| ..|+|+||.++.|+......+.+++.|+ |||.|+ .++.+ |+|.... ..+|+.+||.+||+
T Consensus 76 ~~a~~p~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaLGL~H~-~~~~~vM~~~~~~~~~~~~l~~~D~~~~~~ 154 (157)
T cd04278 76 AHAFFPGGIGGDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHALGLGHS-SDPDSIMYPYYQGPVPKFKLSQDDIRGIQA 154 (157)
T ss_pred ccccCCCCcceeEEECCCcccccCCCCccchHHHHHHHHhccccccCCC-CCCcCeecccccCCCcCCCCCHHHHHHHHH
Confidence 999999 7899999999999986533466777764 999999 99999 5555322 23999999999999
Q ss_pred hhC
Q 039712 208 LYN 210 (211)
Q Consensus 208 LYG 210 (211)
|||
T Consensus 155 lYg 157 (157)
T cd04278 155 LYG 157 (157)
T ss_pred hcC
Confidence 998
No 3
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=99.95 E-value=1e-27 Score=190.01 Aligned_cols=137 Identities=38% Similarity=0.676 Sum_probs=116.9
Q ss_pred CCCCCccceeEEeecCCcc----hhHHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCCCCCCCCCCCCCCcc
Q 039712 65 QWPASKFSLTYAFRLGTRG----DAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGDGRPFDGRGGPDGTL 140 (211)
Q Consensus 65 kW~~~k~~LTy~i~~~~~~----~~~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd~~~fDG~g~~~g~l 140 (211)
||+ +++|||+|.+.++. +.++++++||+.|+++++|+|+|+... ++||+|.|....+++...|++.+ +++
T Consensus 1 ~W~--~~~ity~i~~~~~~~~~~~~~~~i~~A~~~W~~~~~~~F~~~~~~-~adi~i~~~~~~~~~~~~~~~~~---~~~ 74 (154)
T PF00413_consen 1 KWP--KKTITYSISNTTPQLSQSEQRDAIRQAFQAWNDVAPLNFTEVSDG-NADIRISFGSNNHGDGYSFDGSG---GTL 74 (154)
T ss_dssp SSS--SSEEEEEESSBCTTS-HHHHHHHHHHHHHHHHTTSSEEEEEESSS-SCSEEEEEESSSSSSSS-CSSSS---SES
T ss_pred CCC--CCcEEEEEECCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccCC-CcceeeeeeccccCcccccccce---eee
Confidence 798 89999999986632 456778999999999999999999953 69999999999999999999999 999
Q ss_pred ccccCCC---CCcccccCCCCcccCCCCCceeeeeEE-------eeccCCCCCCCC---CcccCCCCCCCCHHHHHHHHH
Q 039712 141 AHAFAPT---NGRFHYDADEPWAVGAVQGAFDSLKDT-------YIIAPSTAVQNA---PCTATVLWRSLQGDDIQGIKA 207 (211)
Q Consensus 141 AhAf~P~---~G~ihfD~de~Wt~~~~~~~~~l~~Va-------LGL~HS~~~~~s---p~y~~~~~~~L~~dDi~~Iq~ 207 (211)
+|++.|. .|+|+|+.++.|+... ...++..|+ |||.|+ .+++| |+|.......|+.+||.+||+
T Consensus 75 ~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~v~~HEiGHaLGL~H~-~~~~svM~~~~~~~~~~~l~~~Di~~i~~ 151 (154)
T PF00413_consen 75 AHAYFPNNIVSGDIHFNDDESWTIDD--SGNDLQSVAIHEIGHALGLDHS-NDPNSVMYPYYRGPDNKTLSEDDIDGIQY 151 (154)
T ss_dssp EEEEESSSTTTTEEEEETTSHEESSS--SSEEHHHHHHHHHHHHTTBESS-SSTTSTTSSSCTSSSSTSTTHHHHHHHHH
T ss_pred eccccccccccccccccccccchhhh--hhhhhhhhhhhccccccCcCcC-CCcccceeeecccCCCCCCCHHHHHHHHH
Confidence 9999996 7999999999998753 357787775 999999 99999 555533323899999999999
Q ss_pred hhC
Q 039712 208 LYN 210 (211)
Q Consensus 208 LYG 210 (211)
|||
T Consensus 152 lYg 154 (154)
T PF00413_consen 152 LYG 154 (154)
T ss_dssp HHS
T ss_pred HhC
Confidence 998
No 4
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=99.81 E-value=9.2e-20 Score=145.81 Aligned_cols=129 Identities=19% Similarity=0.177 Sum_probs=97.4
Q ss_pred cceeEEeecCCc-----c-hhHHHHHHHHHHHHccCCcceEeccCC-CCcceEEEeeeccCCCCCCCCCCCCCCCccccc
Q 039712 71 FSLTYAFRLGTR-----G-DAITPVARAFQTWAANTQFRFSKIEDF-AGADIKISFESRNHGDGRPFDGRGGPDGTLAHA 143 (211)
Q Consensus 71 ~~LTy~i~~~~~-----~-~~~~~i~~Af~~Ws~v~~l~F~ev~~~-~~aDI~I~F~~~~hgd~~~fDG~g~~~g~lAhA 143 (211)
..|+|+|.+... . +.+++|++||+.|+++++|+|+++... .+|||+|.|.... +|+|.| +++|||
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~F~~~~~~~~~adi~I~f~~~~-----~~~~~g---~~~a~a 73 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLKFVYNPEEDNDADIVIFFDRPP-----PVGGAG---GGLARA 73 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCCcEEEEecCCC-----CCCCCC---CceEEe
Confidence 568899987642 2 566788999999999999999998753 3799999998643 799999 999999
Q ss_pred cCCCCCcccccCCCCcccC------CCCCceeeeeEE-------eeccCCCCCCC-C---CcccCCCC--CCCCHHHHHH
Q 039712 144 FAPTNGRFHYDADEPWAVG------AVQGAFDSLKDT-------YIIAPSTAVQN-A---PCTATVLW--RSLQGDDIQG 204 (211)
Q Consensus 144 f~P~~G~ihfD~de~Wt~~------~~~~~~~l~~Va-------LGL~HS~~~~~-s---p~y~~~~~--~~L~~dDi~~ 204 (211)
++|..|. |+....|... ....+.+|+.|+ |||.|+ ..+. + |+|..... ..|+.+||++
T Consensus 74 ~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaLGL~H~-~~~~~siM~p~~~~~~~~~~~l~~~D~~~ 150 (156)
T cd04279 74 GFPLISD--GNRKLFNRTDINLGPGQPRGAENLQAIALHELGHALGLWHH-SDRPEDAMYPSQGQGPDGNPTLSARDVAT 150 (156)
T ss_pred cccccCC--CcccccccceEeecCCcCccchHHHHHHHHHhhhhhcCCCC-CCCccceeeeecccCCcCcCCCCHHHHHH
Confidence 9997644 3444333321 111245777765 999999 8887 6 66664333 3899999999
Q ss_pred HHHhhC
Q 039712 205 IKALYN 210 (211)
Q Consensus 205 Iq~LYG 210 (211)
||.|||
T Consensus 151 i~~lY~ 156 (156)
T cd04279 151 LKRLYG 156 (156)
T ss_pred HHHHhC
Confidence 999997
No 5
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=99.64 E-value=1e-16 Score=128.40 Aligned_cols=132 Identities=17% Similarity=0.116 Sum_probs=92.5
Q ss_pred ccceeEEeecCCcchhHHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCCCCCCCCCCCCCCccccccCCCCC
Q 039712 70 KFSLTYAFRLGTRGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGDGRPFDGRGGPDGTLAHAFAPTNG 149 (211)
Q Consensus 70 k~~LTy~i~~~~~~~~~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd~~~fDG~g~~~g~lAhAf~P~~G 149 (211)
++.|+|.|.+..+...+++|++||+.|+++++++|+|+.....+||+|.|....+.. +|.. +.+++...|..|
T Consensus 1 ~~~I~y~i~~~~~~~~r~~i~~A~~~W~~~~~i~F~e~~~~~~~di~i~~~~~~~~~----~~~~---~~~~~~~~~~~g 73 (165)
T cd04268 1 KKPITYYIDDSVPDKLRAAILDAIEAWNKAFAIGFKNANDVDPADIRYSVIRWIPYN----DGTW---SYGPSQVDPLTG 73 (165)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCcCceeccccCccCceEEEEEeecCC----CCcc---ccCCccCCCCCc
Confidence 467999998876657778899999999999999999998655799999998754211 1222 233333346679
Q ss_pred cccccCCCCcccCCCCCceeeeeE-------EeeccCCCCC----------------CCC-CcccCCC---------CCC
Q 039712 150 RFHYDADEPWAVGAVQGAFDSLKD-------TYIIAPSTAV----------------QNA-PCTATVL---------WRS 196 (211)
Q Consensus 150 ~ihfD~de~Wt~~~~~~~~~l~~V-------aLGL~HS~~~----------------~~s-p~y~~~~---------~~~ 196 (211)
+|+++....|.......+-.++.| ||||.|+ .. ..| |.|.... ...
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaLGL~H~-~~~~~~~~~~~~~~~~~~~~SvM~y~~~~~~~~~~~~~~~~ 152 (165)
T cd04268 74 EILLARVYLYSSFVEYSGARLRNTAEHELGHALGLRHN-FAASDRDDNVDLLAEKGDTSSVMDYAPSNFSIQLGDGQKYT 152 (165)
T ss_pred cEEeeEEEEchhHHHHHHHHHHHHHHHHHHHHhccccc-CcCCccCCcchhhccCCCCcccCCCCccccccccccccCCC
Confidence 999988776542100011233333 3999999 77 556 6665321 238
Q ss_pred CCHHHHHHHHHhh
Q 039712 197 LQGDDIQGIKALY 209 (211)
Q Consensus 197 L~~dDi~~Iq~LY 209 (211)
|+.+||.+||.||
T Consensus 153 ~~~~Di~ai~~lY 165 (165)
T cd04268 153 IGPYDIAAIKKLY 165 (165)
T ss_pred CCHHHHHHHHhcC
Confidence 9999999999999
No 6
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=99.63 E-value=4.6e-16 Score=122.00 Aligned_cols=129 Identities=26% Similarity=0.364 Sum_probs=94.9
Q ss_pred CCCCCCccceeEEee-cCCcchh-HHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCCCCCCCCCCCCCCccc
Q 039712 64 SQWPASKFSLTYAFR-LGTRGDA-ITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGDGRPFDGRGGPDGTLA 141 (211)
Q Consensus 64 ~kW~~~k~~LTy~i~-~~~~~~~-~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd~~~fDG~g~~~g~lA 141 (211)
.+|+ +.+|+|.|. +..+... ++.|++||+.|+++++|+|+|+.+ ++||+|.|...+| .| ..+|
T Consensus 3 ~~W~--~~~v~Y~i~~~~~~~~~~~~~i~~A~~~w~~~t~i~F~e~~~--~ad~~I~f~~~~~--------~g---~~~a 67 (140)
T smart00235 3 KKWP--KGTVPYVIDSSSLSPEEVREAIARAFAEWSDVTCLRFVERTS--TADIYISFGKGDG--------SG---CTLS 67 (140)
T ss_pred CcCC--CCcEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCeeEEEECCC--CCCeEEEEEECCC--------CC---ccee
Confidence 4798 789999997 4333344 788899999999999999999874 7999999998765 12 2269
Q ss_pred cccCCCCCcccccCCCCcccCCCCCceeeeeEEeeccCCCCCCCC------CcccCCCCC-CCCHHHHHHHHHhhCC
Q 039712 142 HAFAPTNGRFHYDADEPWAVGAVQGAFDSLKDTYIIAPSTAVQNA------PCTATVLWR-SLQGDDIQGIKALYNV 211 (211)
Q Consensus 142 hAf~P~~G~ihfD~de~Wt~~~~~~~~~l~~VaLGL~HS~~~~~s------p~y~~~~~~-~L~~dDi~~Iq~LYG~ 211 (211)
|+++| .|++||+. +.|..... ...--+..||||.|+ ..+.+ |.|...... .|..+|..+++.+||.
T Consensus 68 ~~g~~-~g~~~~~~-~~~~~~~~-~~~HEigHaLGl~H~-~~~~drd~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 140 (140)
T smart00235 68 HAGRP-GGDQHFSL-GNGCINTG-VAAHELGHALGLYHE-QSRSDRDNYMYINYTNITRNFDLSNDDSLGIPYDYGS 140 (140)
T ss_pred eeecC-CCceEEEc-cCCcCCcc-cHHHHHHHHhcCCcC-CCCCcccCeEEEehhhhhhccccccccCCCchhccCc
Confidence 99998 89999987 77765321 001111124999999 77665 666533222 7788899999999985
No 7
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=99.61 E-value=2.4e-15 Score=123.54 Aligned_cols=113 Identities=18% Similarity=0.256 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCCCCCCCCCCCCCCccccccCCC-------CCcccccCC
Q 039712 84 DAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGDGRPFDGRGGPDGTLAHAFAPT-------NGRFHYDAD 156 (211)
Q Consensus 84 ~~~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd~~~fDG~g~~~g~lAhAf~P~-------~G~ihfD~d 156 (211)
+.++.|++||+.|+++++|+|+|+.+...+||+|.+..... + ++.|+|++|. .|+|++|.+
T Consensus 34 ~~~~~i~~A~~~w~~~~~l~F~e~~~~~~adI~i~~~~~~~---------~---~~~g~a~~p~~~~~~~~~g~i~~~~~ 101 (186)
T cd04277 34 AQQAAARDALEAWEDVADIDFVEVSDNSGADIRFGNSSDPD---------G---NTAGYAYYPGSGSGTAYGGDIWFNSS 101 (186)
T ss_pred HHHHHHHHHHHHHHhhcCceeEECCCCCcceEEEEeccCCC---------C---CccEEEECCCCCccccccceeEEecC
Confidence 45677899999999999999999997668999999875322 4 7799999984 368999998
Q ss_pred CCcccCCCCCceeeeeE------EeeccCCCCCCCC-----------------CcccCCC----------CCCCCHHHHH
Q 039712 157 EPWAVGAVQGAFDSLKD------TYIIAPSTAVQNA-----------------PCTATVL----------WRSLQGDDIQ 203 (211)
Q Consensus 157 e~Wt~~~~~~~~~l~~V------aLGL~HS~~~~~s-----------------p~y~~~~----------~~~L~~dDi~ 203 (211)
..|.... .+...+.++ ||||.|+ .+.+. |.|.... ...++..||.
T Consensus 102 ~~~~~~~-~g~~~~~t~~HEiGHaLGL~H~-~~~~~~~~~~~~~~~~~~~~SVMSY~~~~~~~~~~~~~~~~~~~~~DI~ 179 (186)
T cd04277 102 YDTNSDS-PGSYGYQTIIHEIGHALGLEHP-GDYNGGDPVPPTYALDSREYTVMSYNSGYGNGASAGGGYPQTPMLLDIA 179 (186)
T ss_pred cccccCC-CChhhHHHHHHHHHHHhcCCCC-CcCCCCCCCCccccccCcceEEEeecCCCCCCccccCcccCCccHHHHH
Confidence 8886421 111122221 3999999 76533 3343211 1278999999
Q ss_pred HHHHhhC
Q 039712 204 GIKALYN 210 (211)
Q Consensus 204 ~Iq~LYG 210 (211)
+||+|||
T Consensus 180 AlQ~lYG 186 (186)
T cd04277 180 ALQYLYG 186 (186)
T ss_pred HHHHhhC
Confidence 9999998
No 8
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=99.03 E-value=1.4e-09 Score=86.84 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHccCCcceEeccCC-CCcceEEEeeeccCCCCCCCCCCCCCCCccccccCCCC-----CcccccCCC
Q 039712 84 DAITPVARAFQTWAANTQFRFSKIEDF-AGADIKISFESRNHGDGRPFDGRGGPDGTLAHAFAPTN-----GRFHYDADE 157 (211)
Q Consensus 84 ~~~~~i~~Af~~Ws~v~~l~F~ev~~~-~~aDI~I~F~~~~hgd~~~fDG~g~~~g~lAhAf~P~~-----G~ihfD~de 157 (211)
..+..|+.|++.|+++++++|+++... ..+||.|.+...++ .+ +.+++|++|.. |.++++...
T Consensus 22 ~~~~~v~~a~~~w~~~~~i~f~~~~~~~~~~di~~~~~~~~~--------~~---~~~g~a~~~~~c~~~~~~~~~~~~~ 90 (167)
T cd00203 22 QIQSLILIAMQIWRDYLNIRFVLVGVEIDKADIAILVTRQDF--------DG---GTGGWAYLGRVCDSLRGVGVLQDNQ 90 (167)
T ss_pred HHHHHHHHHHHHHHhhhCceEEEeccCCCcCcEEEEeccccC--------CC---CceEEEecCCccCCCCCcEEEecCC
Confidence 455778999999999999999999853 38999999976543 23 66788888743 566665444
Q ss_pred CcccCCCCCceeeee-E------EeeccCCCCCCC--------------------C-CcccCCC-----CCCCCHHHHHH
Q 039712 158 PWAVGAVQGAFDSLK-D------TYIIAPSTAVQN--------------------A-PCTATVL-----WRSLQGDDIQG 204 (211)
Q Consensus 158 ~Wt~~~~~~~~~l~~-V------aLGL~HS~~~~~--------------------s-p~y~~~~-----~~~L~~dDi~~ 204 (211)
.|. ..+.. + +|||.|. .... + |.|.... ..+++..||..
T Consensus 91 ~~~-------~~~~~~~~HElGH~LGl~H~-~~~~~~~~~~~~~~~~~~~~~~~~siM~y~~~~~~~~~~~~fS~~d~~~ 162 (167)
T cd00203 91 SGT-------KEGAQTIAHELGHALGFYHD-HDRKDRDDYPTIDDTLNAEDDDYYSVMSYTKGSFSDGQRKDFSQCDIDQ 162 (167)
T ss_pred ccc-------ccchhhHHHHHHHHhCCCcc-CcCCCCCCCccccccccCCCCCCCeEeccCccccCcccCCCcCHHHHHH
Confidence 331 12222 2 2999999 6521 2 5555322 23899999999
Q ss_pred HHHhh
Q 039712 205 IKALY 209 (211)
Q Consensus 205 Iq~LY 209 (211)
||+||
T Consensus 163 i~~~Y 167 (167)
T cd00203 163 INKLY 167 (167)
T ss_pred HHhhC
Confidence 99998
No 9
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=98.69 E-value=5.5e-08 Score=81.20 Aligned_cols=134 Identities=11% Similarity=-0.050 Sum_probs=79.4
Q ss_pred ccceeEEeecCCcchhHHHHHHHHHHHHcc------CCcceEeccCC--CCcceEEEeeeccCCCCCCCCCCCCCCCccc
Q 039712 70 KFSLTYAFRLGTRGDAITPVARAFQTWAAN------TQFRFSKIEDF--AGADIKISFESRNHGDGRPFDGRGGPDGTLA 141 (211)
Q Consensus 70 k~~LTy~i~~~~~~~~~~~i~~Af~~Ws~v------~~l~F~ev~~~--~~aDI~I~F~~~~hgd~~~fDG~g~~~g~lA 141 (211)
|+.|||+|.++++.+.+++|++||+.|+++ .+..+.++.+. ...||++...+--|.+ ++.. +...
T Consensus 7 k~pItyyI~~~~p~~~r~aI~~A~~~Wn~~fe~~Gf~~a~~v~~~p~~~~~~Diry~~ir~~~~~----~~~~---~~gp 79 (197)
T cd04276 7 KEPIVYYLDNTFPEKYRDAIREGVLYWNKAFEKAGFKNAIIVKVLPDDADPGDIRYNVIRWIHSP----NGGW---AYGP 79 (197)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHHHHHHHhcCCCccEEEEeCCCCcCcccceEEEEEEEecC----CCcc---eecc
Confidence 889999999987767778899999999998 46666666432 2469994444433332 2233 4444
Q ss_pred cccCCCCC-----cccccCCCCcccCCC---CCceeeee-E------EeeccCCCCCCCC--------------------
Q 039712 142 HAFAPTNG-----RFHYDADEPWAVGAV---QGAFDSLK-D------TYIIAPSTAVQNA-------------------- 186 (211)
Q Consensus 142 hAf~P~~G-----~ihfD~de~Wt~~~~---~~~~~l~~-V------aLGL~HS~~~~~s-------------------- 186 (211)
+..-|..| +|+++.......... ..+-.+.. + +|||.|. -...+
T Consensus 80 s~~dPrTGeIl~a~V~l~~~~~~~~~~~~~~~~~~~~~~~~~he~gh~lGl~hn-~~~s~~~~~~~l~~~~~~~~~~~~~ 158 (197)
T cd04276 80 SVVDPRTGEILKADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTLGLRHN-FKASSDGSNEELEDPLGTKEKGATS 158 (197)
T ss_pred cccCCCCCCeEEEEEEeCchhhccchhHHHHHHHHHHHHHHHHHHHHHhcCccc-ccccccCchhhhcchhhhhhcCCcc
Confidence 55557554 556664432211100 00111222 2 2999998 43222
Q ss_pred --CcccCC------------CCCCCCHHHHHHHHHhhCC
Q 039712 187 --PCTATV------------LWRSLQGDDIQGIKALYNV 211 (211)
Q Consensus 187 --p~y~~~------------~~~~L~~dDi~~Iq~LYG~ 211 (211)
|.|... ....+...||.+||.|||.
T Consensus 159 SVMdY~~~~~~~~~~~~~~~~~~~~g~yDi~Aiq~~Y~~ 197 (197)
T cd04276 159 SVMDYPPPNVAAQGEDQGDYYPPTIGPYDKWAIEYGYTP 197 (197)
T ss_pred eeecCccccccccCccccccccCCCchHHHHHHHHHcCC
Confidence 223110 1127889999999999984
No 10
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=98.68 E-value=3.5e-08 Score=82.04 Aligned_cols=66 Identities=27% Similarity=0.422 Sum_probs=51.9
Q ss_pred CCCCCccceeEEeecCCcchhHHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCCCCCCCCCC
Q 039712 65 QWPASKFSLTYAFRLGTRGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGDGRPFDGRG 134 (211)
Q Consensus 65 kW~~~k~~LTy~i~~~~~~~~~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd~~~fDG~g 134 (211)
+|+ +.+.|+|.|....+.+.++.|++||+.|+++++|+|+|+... .+||+|.|..+. || +.+.|..
T Consensus 2 ~W~-~~~~~~~~f~~~~~~~~r~~I~~A~~~W~~~t~i~F~~~~~~-~adi~I~f~~~~-Gc-~S~vG~~ 67 (198)
T cd04327 2 LWR-NGTVLRIAFLGGPDAFLKDKVRAAAREWLPYANLKFKFVTDA-DADIRISFTPGD-GY-WSYVGTD 67 (198)
T ss_pred CCC-CCCeEEEEeCCCCcHHHHHHHHHHHHHHhhhcCeEEEECCCC-CCCEEEEEecCC-CC-CCCcCCc
Confidence 688 567799999877554667788999999999999999999853 799999998743 44 4455543
No 11
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=98.51 E-value=9.7e-08 Score=63.62 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhcCCCccccCCHHHHHHH
Q 039712 2 LLESTIKTCQLNFNLKSTGFLDANTVAKM 30 (211)
Q Consensus 2 ~~~~Ai~~fQ~~~~L~~TG~lD~~T~~~M 30 (211)
.+++||+.||+.+||++||++|.+|+++|
T Consensus 29 ~t~~Av~~fQ~~~gL~~tG~~d~~T~~~L 57 (57)
T PF01471_consen 29 ETREAVKAFQKANGLPVTGVVDPETWEAL 57 (57)
T ss_dssp HHHHHHHHHHHHTTS-SSSSBCHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCCCccCHHHHhcC
Confidence 57899999999999999999999999987
No 12
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=97.10 E-value=0.0012 Score=54.09 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=41.0
Q ss_pred cceeEEeecCCcchhHHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCC
Q 039712 71 FSLTYAFRLGTRGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGD 126 (211)
Q Consensus 71 ~~LTy~i~~~~~~~~~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd 126 (211)
..|.|.|...-+...++.|++||+.|+++|.|+|+|+.. ++..|.|..+ .||
T Consensus 2 ~~VpY~i~~~~~~~~~~~I~~A~~~w~~~TcIrF~~~~~---~~~~I~f~~~-~Gc 53 (180)
T cd04280 2 GTVPYVIDGSFDESDRSLILRAMREIESNTCIRFVPRTT---EKDYIRIVKG-SGC 53 (180)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHhCCcceEEECCC---CCcEEEEEcC-CCc
Confidence 368899988544466778899999999999999999873 5667777765 555
No 13
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=96.89 E-value=0.0048 Score=52.07 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=44.0
Q ss_pred ccceeEEeecCCcc----hhHHHHHHHHHHHHccC-CcceEec--cCCCCcceEEEeeeccCCCCCCCCCCCCCCCcccc
Q 039712 70 KFSLTYAFRLGTRG----DAITPVARAFQTWAANT-QFRFSKI--EDFAGADIKISFESRNHGDGRPFDGRGGPDGTLAH 142 (211)
Q Consensus 70 k~~LTy~i~~~~~~----~~~~~i~~Af~~Ws~v~-~l~F~ev--~~~~~aDI~I~F~~~~hgd~~~fDG~g~~~g~lAh 142 (211)
.++|+-.+...... ..+.++.+|.+.|-.+. .|+|+-+ .....+||.|.=.. .+.+. |+++-
T Consensus 38 ~~~I~i~~~~~~~~~l~s~~~~al~~AI~~yNalgl~i~F~~t~g~~~~~~di~v~~~~--------~~~~~---G~ggs 106 (211)
T PF12388_consen 38 PRTITIIGYTGGSQSLNSAWRTALDEAINNYNALGLSITFTLTFGTNYQNADIIVYSNS--------SNNPS---GAGGS 106 (211)
T ss_pred CCEEEEEeCCCccccccHHHHHHHHHHHHHHHhhCCceEEEEecCCCcCCCceEEEecc--------CCCCC---Cccee
Confidence 46777666653221 45678899999999972 4677422 22346688663211 12234 67888
Q ss_pred ccCC-CCC----cccc
Q 039712 143 AFAP-TNG----RFHY 153 (211)
Q Consensus 143 Af~P-~~G----~ihf 153 (211)
|.|| .+| .|.+
T Consensus 107 AGFP~s~G~P~~~I~I 122 (211)
T PF12388_consen 107 AGFPTSNGNPYKFIQI 122 (211)
T ss_pred ccCCCCCCCCCceEEE
Confidence 9999 445 4555
No 14
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=96.52 E-value=0.0052 Score=50.88 Aligned_cols=57 Identities=25% Similarity=0.434 Sum_probs=42.2
Q ss_pred CCCCCccceeEEeecCCcchhHHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCC
Q 039712 65 QWPASKFSLTYAFRLGTRGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGD 126 (211)
Q Consensus 65 kW~~~k~~LTy~i~~~~~~~~~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd 126 (211)
+|+ ...|-|.|.+..+...++.|++|+..|++.+.++|+++. . .....|.|.. ..||
T Consensus 2 ~Wp--~~~IpY~~~~~~~~~~~~~I~~Am~~~e~~TcI~F~~~~-~-~~~~~i~~~~-~~gC 58 (191)
T PF01400_consen 2 KWP--NGTIPYYIDPSFSSSQRQRIRKAMDEWEKNTCIRFVERT-E-NEDDYISFSN-GSGC 58 (191)
T ss_dssp S-G--GGEEEEEEETTS-HHHHHHHHHHHHHHHHHSSEEEEE-S-S-SSSSEEEEES-SSSE
T ss_pred cCC--CCEEEEEECCCCCHHHHHHHHHHHHHHHhCCCEEEEECC-C-CCceEEEeec-Cccc
Confidence 798 779999998764445667899999999999999999998 3 4555666654 4454
No 15
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=96.17 E-value=0.015 Score=48.67 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=44.4
Q ss_pred cCCCCCCccceeEEeecCCcchhHHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCC
Q 039712 63 VSQWPASKFSLTYAFRLGTRGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGD 126 (211)
Q Consensus 63 ~~kW~~~k~~LTy~i~~~~~~~~~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd 126 (211)
..+|+ +..|-|.|...-....+..|++|++.|++.|-++|++-.. ..-.|.|..+..||
T Consensus 7 ~~~Wp--~~~VpY~i~~~~~~~~~~~I~~Am~~~~~~TCirF~~r~~---~~~yi~f~~~~~GC 65 (200)
T cd04281 7 ERIWP--GGVIPYVIDGNFTGSQRAMFKQAMRHWENFTCVTFVERTP---EENYIVFTYRPCGC 65 (200)
T ss_pred cCcCC--CCEEEEEECCCCCHHHHHHHHHHHHHHHhCCceEEEECCC---CCCEEEEEECCCCe
Confidence 45898 7899999976544456677899999999999999998663 34456666554555
No 16
>TIGR02869 spore_SleB spore cortex-lytic enzyme. Members of this protein family are the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. This protein is stored in an inactive form in the spore and activated during germination.
Probab=96.17 E-value=0.0053 Score=51.42 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcCCCccccCCHHHHHHHhCCCCCccc
Q 039712 2 LLESTIKTCQLNFNLKSTGFLDANTVAKMRTPRCGVAD 39 (211)
Q Consensus 2 ~~~~Ai~~fQ~~~~L~~TG~lD~~T~~~M~~pRCG~pD 39 (211)
.+++||+.||+..||+++|++|..|+..|.. -|.++.
T Consensus 40 ~T~~AV~~FQ~~~GL~~dG~vg~~T~~~L~~-~~~~~~ 76 (201)
T TIGR02869 40 LTYWAVRKFQSKNGLTVDGIVGPKTKAALGI-ATTQQS 76 (201)
T ss_pred HHHHHHHHHHHHhCCCCCCCcCHHHHHHhCC-ccccCc
Confidence 5789999999999999999999999999954 344444
No 17
>PRK10594 murein L,D-transpeptidase; Provisional
Probab=95.59 E-value=0.011 Score=56.90 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHhcCCCccccCCHHHHHHHhCC
Q 039712 1 ELLESTIKTCQLNFNLKSTGFLDANTVAKMRTP 33 (211)
Q Consensus 1 e~~~~Ai~~fQ~~~~L~~TG~lD~~T~~~M~~p 33 (211)
++|.+|||+||+..||+.+|+++..|++.|+.|
T Consensus 311 ~~Lv~AVK~FQ~rhGL~~DGvIG~~T~~~LNvs 343 (608)
T PRK10594 311 NELVEAVKRFQAWQGLGADGVIGPRTRDWLNVT 343 (608)
T ss_pred HHHHHHHHHHHHHcCCCCCcCcCHHHHHHHcCC
Confidence 368999999999999999999999999987654
No 18
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=94.28 E-value=0.15 Score=43.65 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=42.0
Q ss_pred cCCCCCCccceeEEeecCCcchhHHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCC
Q 039712 63 VSQWPASKFSLTYAFRLGTRGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGD 126 (211)
Q Consensus 63 ~~kW~~~k~~LTy~i~~~~~~~~~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd 126 (211)
..+|+ + .|-|.|...-+...+..|++|++.|++.|-++|++.... . -.|.|..+ .||
T Consensus 43 ~~~Wp--~-~VPY~i~~~~~~~~~~~I~~Am~~~~~~TCirF~~rt~e--~-~yi~i~~~-~GC 99 (230)
T cd04282 43 TYRWP--F-PIPYILDDSLDLNAKGVILKAFEMYRLKSCVDFKPYEGE--S-NYIFFFKG-SGC 99 (230)
T ss_pred ccCCC--c-ceeEEECCCCCHHHHHHHHHHHHHHHhCCCeeEEECCCC--C-cEEEEEcC-CCe
Confidence 45898 5 799999765444566788999999999999999987632 2 24566553 355
No 19
>COG2989 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.58 E-value=0.072 Score=50.54 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHhcCCCccccCCHHHHHHHhC
Q 039712 2 LLESTIKTCQLNFNLKSTGFLDANTVAKMRT 32 (211)
Q Consensus 2 ~~~~Ai~~fQ~~~~L~~TG~lD~~T~~~M~~ 32 (211)
++.+|||+||...||+..|++++.|++.|+-
T Consensus 268 el~~avKrfQ~~~GL~~DGviG~~T~~aLn~ 298 (561)
T COG2989 268 ELVEAVKRFQARHGLPADGVIGPATRAALNV 298 (561)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHhcc
Confidence 5889999999999999999999999999975
No 20
>KOG3714 consensus Meprin A metalloprotease [Posttranslational modification, protein turnover, chaperones]
Probab=89.64 E-value=0.85 Score=42.23 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=44.4
Q ss_pred cccCCCCCCccceeEEeecCCcchhHHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeec
Q 039712 61 HTVSQWPASKFSLTYAFRLGTRGDAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESR 122 (211)
Q Consensus 61 ~~~~kW~~~k~~LTy~i~~~~~~~~~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~ 122 (211)
....+|+ ...|-|.|........+..|+.||+.|++.|=++|.|.... +.+..|-+..+
T Consensus 77 ~~~~~Wp--~~~ipY~i~~~~~~~~r~~i~~A~~~~~~~TCi~F~~~~~~-~~~~~~~~~~~ 135 (411)
T KOG3714|consen 77 NPERRWP--NGVIPYYIDGSFTSSQRALIRQAMREIENHTCIRFVERTTP-DKDYLIVFTGG 135 (411)
T ss_pred ChhhcCC--CCeeeeEECCCCCHHHHHHHHHHHHHHhhCcceEEEeCCCC-CcceEEEeCCC
Confidence 3466898 58999999887433566778999999999999999998743 45555555443
No 21
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=89.14 E-value=0.95 Score=37.38 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=30.3
Q ss_pred cceeEEeecCCcchhHHHHHHHHHHHHccCCcceEecc
Q 039712 71 FSLTYAFRLGTRGDAITPVARAFQTWAANTQFRFSKIE 108 (211)
Q Consensus 71 ~~LTy~i~~~~~~~~~~~i~~Af~~Ws~v~~l~F~ev~ 108 (211)
..|=|.|...-....++.|++|++.|++.|-++|++..
T Consensus 4 ~~IpY~i~~~~~~~~~~~I~~A~~~~~~~TCirF~~~~ 41 (182)
T cd04283 4 VYVPYVISPQYSENERAVIEKAMQEFETLTCVRFVPRT 41 (182)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhCCceeeEECC
Confidence 35778887654445677889999999999999999865
No 22
>COG3409 Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]
Probab=88.39 E-value=0.47 Score=37.83 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhcCC-CccccCCHHHHHHHhCCC
Q 039712 2 LLESTIKTCQLNFNL-KSTGFLDANTVAKMRTPR 34 (211)
Q Consensus 2 ~~~~Ai~~fQ~~~~L-~~TG~lD~~T~~~M~~pR 34 (211)
....||+.||+.++| +++|.++++|+..+....
T Consensus 73 ~t~~av~~fQ~~~gl~~~dG~~g~~t~~al~~~~ 106 (185)
T COG3409 73 ETAAAVRAFQQKNGLSPVDGIVGPATRAALPSQL 106 (185)
T ss_pred ccHHHHHHHhhhcCcccccccccHHHHHHHHHHh
Confidence 457899999999999 899999999999887643
No 23
>PF09374 PG_binding_3: Predicted Peptidoglycan domain; InterPro: IPR018537 This family contains a potential peptidoglycan binding domain. ; PDB: 2IKB_B 2IS5_A 2NR7_A.
Probab=86.15 E-value=0.81 Score=31.99 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=20.8
Q ss_pred HHHHHHHHhcC----CCccccCCHHHHHHH
Q 039712 5 STIKTCQLNFN----LKSTGFLDANTVAKM 30 (211)
Q Consensus 5 ~Ai~~fQ~~~~----L~~TG~lD~~T~~~M 30 (211)
.|+|.+|+..| +.+.|++-+.|++.+
T Consensus 1 rAik~LQ~alg~~~~v~~DG~iGp~Tl~Al 30 (72)
T PF09374_consen 1 RAIKFLQRALGLGADVAVDGIIGPKTLAAL 30 (72)
T ss_dssp HHHHHHHHHHT----S--SS--SHHHHHHH
T ss_pred CHHHHHHHHHccCCccCCCCCcCHHHHHHH
Confidence 48999999999 999999999999998
No 24
>COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=81.72 E-value=2.6 Score=35.75 Aligned_cols=110 Identities=19% Similarity=0.259 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCCCCCCCCCCCC------CCccccccCCC----CCcccccC
Q 039712 86 ITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGDGRPFDGRGGP------DGTLAHAFAPT----NGRFHYDA 155 (211)
Q Consensus 86 ~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd~~~fDG~g~~------~g~lAhAf~P~----~G~ihfD~ 155 (211)
+.++..|.+-|++.=||..+|- ..+|||+|.-... -| .+-++-|-+ -..|.|+-.|+ .++|-...
T Consensus 106 q~a~~tava~wa~~fpl~ive~--~eeaDItie~~n~-pg--tg~~~~grArtal~~~efl~~~~~~~~lnhr~~i~~~p 180 (236)
T COG5549 106 QGAYLTAVAGWAKTFPLIIVER--FEEADITIEVGNP-PG--TGWRQYGRARTALIAYEFLGHALGLGHLNHRGDIMYPP 180 (236)
T ss_pred HHHHHHHHHHHHHhCCceeeec--ceeeeEEEEecCC-CC--CcccccchHHHHHHHHHHhhhccCcccccccccccCCc
Confidence 5778999999999966666554 4589999876542 12 111211100 02233333221 12232222
Q ss_pred CCCcccCCCCCceeeeeE-------Eeecc-CCCCCCCCCcccCCCCCCCCHHHHHHHHHhhC
Q 039712 156 DEPWAVGAVQGAFDSLKD-------TYIIA-PSTAVQNAPCTATVLWRSLQGDDIQGIKALYN 210 (211)
Q Consensus 156 de~Wt~~~~~~~~~l~~V-------aLGL~-HS~~~~~sp~y~~~~~~~L~~dDi~~Iq~LYG 210 (211)
.+. .-+|... |||+. || .-+.-+.|.. ....++.-|++-+..+|-
T Consensus 181 g~~--------~e~L~~tarhElGhaLgi~ghs-d~ks~aly~~-s~~~is~rdv~tL~r~Ye 233 (236)
T COG5549 181 GEL--------RENLNPTARHELGHALGIWGHS-DLKSDALYGI-SWQGISRRDVKTLERKYE 233 (236)
T ss_pred ccc--------hhhhhHHHHHhhcchheecccc-cchhhhhcch-hhcccCHHHHHHHHHHhc
Confidence 111 1233333 39998 88 5554444432 122488999999999984
No 25
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=81.17 E-value=4.8 Score=31.53 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=56.8
Q ss_pred ceeEEeecCCcchhHHHHHHHHHHH-HccCCcceEeccCCCCcceEEEeeeccCCCCCCCCCCCCCCCccccccCCCCCc
Q 039712 72 SLTYAFRLGTRGDAITPVARAFQTW-AANTQFRFSKIEDFAGADIKISFESRNHGDGRPFDGRGGPDGTLAHAFAPTNGR 150 (211)
Q Consensus 72 ~LTy~i~~~~~~~~~~~i~~Af~~W-s~v~~l~F~ev~~~~~aDI~I~F~~~~hgd~~~fDG~g~~~g~lAhAf~P~~G~ 150 (211)
+|+|.-.... +...+|.+|-+.| +.|++++|+|.. .++|+|.-.. | ++ +..|-..-...|.
T Consensus 3 tv~Ydas~A~--~f~~~i~~aa~iWN~sV~NV~L~~~s---~a~~~~~~~~----~------~~---~sya~~~g~G~G~ 64 (132)
T PF02031_consen 3 TVYYDASRAP--EFRSAIAQAAQIWNSSVSNVRLVEGS---SADIRYYEGN----D------PR---GSYASTDGLGSGY 64 (132)
T ss_dssp EEEEEEEE-G--GGHHHHHHHHHHHHHH-SSEEEEE-S---S-SEEEEEE------------TT-----EEEE-SSS-EE
T ss_pred EEEEeCCCCc--hhHHHHHHHHHHHhcccCceEEeecC---CCcEEEEEec----C------CC---CcccccCCCCcEE
Confidence 4666554332 5667889999999 578999999975 4888875432 1 22 3333332234688
Q ss_pred ccccCCCCcccCCCCCceeeeeEE-------eeccCCCCCCCC--CcccC----CCCCCCCHHHHHHHHHhhC
Q 039712 151 FHYDADEPWAVGAVQGAFDSLKDT-------YIIAPSTAVQNA--PCTAT----VLWRSLQGDDIQGIKALYN 210 (211)
Q Consensus 151 ihfD~de~Wt~~~~~~~~~l~~Va-------LGL~HS~~~~~s--p~y~~----~~~~~L~~dDi~~Iq~LYG 210 (211)
|.+|. .+.. ++|-.-|+ |||.--++-+-| |+=.. +........++..+++||.
T Consensus 65 I~l~~--~~~q-----gy~~~RIaaHE~GHiLGLPD~y~GpCS~LMSG~~aG~sCtN~~Pna~E~a~V~~~~a 130 (132)
T PF02031_consen 65 IFLDY--QQNQ-----GYNSTRIAAHELGHILGLPDHYPGPCSELMSGGSAGTSCTNAYPNAAERARVNSLFA 130 (132)
T ss_dssp EEEEH--HHHH-----HS-HHHHHHHHHHHHHT----TTS-TT-GGGTTTT-TT----S--HHHHHHHHHHCT
T ss_pred EEech--HHhh-----CCccceeeeehhccccCCCCCCCCccHHhhcCCCCCCCCCCCCCCHHHHHHHHHHhc
Confidence 98883 2322 33433343 787633133433 22111 1112677889999999885
No 26
>PF11350 DUF3152: Protein of unknown function (DUF3152); InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function. Some are annotated as membrane proteins, however this cannot be confirmed.
Probab=39.48 E-value=22 Score=29.90 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=62.9
Q ss_pred ccceeEEeecCC-----c----chhHHHHHHHH---HHHHccCCcceEeccCCCCcceEEEeeeccCCCC--CCCCCCCC
Q 039712 70 KFSLTYAFRLGT-----R----GDAITPVARAF---QTWAANTQFRFSKIEDFAGADIKISFESRNHGDG--RPFDGRGG 135 (211)
Q Consensus 70 k~~LTy~i~~~~-----~----~~~~~~i~~Af---~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd~--~~fDG~g~ 135 (211)
.+.+||++.-.. . .+..+.|.+.+ +-|.....+.|+.|.+. .+|++|..++...-|. .+.+-.+
T Consensus 28 ~~~~rY~VeVE~Gi~~~~~gg~~~fA~~V~~tL~DpRgW~~~g~~~F~rV~~~-~~Df~I~Lasp~T~~~lC~g~~~~~- 105 (203)
T PF11350_consen 28 GRLYRYRVEVEDGIDVDAYGGDDAFAAMVDATLADPRGWTADGRVRFQRVDSG-APDFRISLASPGTTDRLCAGLDTSG- 105 (203)
T ss_pred CceEEEEEEEccCcCCcccccHHHHHHHHHHHhcCCCCCCcCCCEEEEECCCC-CCCEEEEECCcchhhhhccCcCcCc-
Confidence 478999997421 1 12223333333 34999999999999976 4999999998776432 2344333
Q ss_pred CCCccccccCCCCCcccccCCCCcccCCCCCceee-----ee----E--EeeccCCCCCCCC
Q 039712 136 PDGTLAHAFAPTNGRFHYDADEPWAVGAVQGAFDS-----LK----D--TYIIAPSTAVQNA 186 (211)
Q Consensus 136 ~~g~lAhAf~P~~G~ihfD~de~Wt~~~~~~~~~l-----~~----V--aLGL~HS~~~~~s 186 (211)
. +.. +.|..++|-+|. ..|..+....+-|| +. | +||-+|- .-+..
T Consensus 106 --e-~SC-~~~~g~~VvIN~-~RWv~Ga~~f~gdl~~YRqYvINHEVGH~LGh~H~-~Cpg~ 161 (203)
T PF11350_consen 106 --E-TSC-RNPAGGRVVINL-ARWVRGAPAFGGDLASYRQYVINHEVGHALGHGHE-PCPGP 161 (203)
T ss_pred --e-eEe-ecCCCCeEEEeh-HHhhccCcccCCcHHHHHHHhhhhhhhhhcccCCC-cCCCC
Confidence 1 111 233456666654 56876543211122 12 2 2888887 66664
No 27
>COG5570 Uncharacterized small protein [Function unknown]
Probab=32.44 E-value=49 Score=21.87 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhcCCCccccCCHHHHHHHhCCCCCc
Q 039712 2 LLESTIKTCQLNFNLKSTGFLDANTVAKMRTPRCGV 37 (211)
Q Consensus 2 ~~~~Ai~~fQ~~~~L~~TG~lD~~T~~~M~~pRCG~ 37 (211)
+++.-|..+|+-. |.|+++..+.|+.|-|--
T Consensus 2 aieshl~eL~kkH-----g~le~ei~ea~n~Ps~dd 32 (57)
T COG5570 2 AIESHLAELEKKH-----GNLEREIQEAMNSPSSDD 32 (57)
T ss_pred cHHHHHHHHHHhh-----chHHHHHHHHhcCCCcch
Confidence 3566777788765 899999999999998853
No 28
>PF11150 DUF2927: Protein of unknown function (DUF2927); InterPro: IPR021323 This family is conserved in Proteobacteria. Several members are described as being putative lipoproteins, but otherwise the function is not known.
Probab=29.64 E-value=3.4e+02 Score=22.82 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=41.7
Q ss_pred cCCCCCCccceeEEeecCCcc---hhHHHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccC
Q 039712 63 VSQWPASKFSLTYAFRLGTRG---DAITPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNH 124 (211)
Q Consensus 63 ~~kW~~~k~~LTy~i~~~~~~---~~~~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~h 124 (211)
-.||. ..++..+...... ...+.+..-++.-+.++.+.++.+... +|+|.|-|...+.
T Consensus 27 l~Rw~---~PVrv~v~~~~~~~~~~d~~~v~~~~~rL~~itg~~I~~~~~~-~aN~~v~~~~~~~ 87 (213)
T PF11150_consen 27 LRRWE---GPVRVRVEGVPPADRARDLARVRAYLARLRRITGHPISQVSSP-NANFHVIFVSEDD 87 (213)
T ss_pred cccCC---CCeEEEEeccChhhHHHHHHHHHHHHhhhccccCCceeeccCC-CCcEEEEEeccch
Confidence 35895 5689888843322 223344555666788999999999866 8999999998765
No 29
>COG3926 zliS Lysozyme family protein [General function prediction only]
Probab=27.15 E-value=68 Score=27.63 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=25.6
Q ss_pred HHHHHHHHhcC----CCccccCCHHHHHHHhC
Q 039712 5 STIKTCQLNFN----LKSTGFLDANTVAKMRT 32 (211)
Q Consensus 5 ~Ai~~fQ~~~~----L~~TG~lD~~T~~~M~~ 32 (211)
.|++.+|+..| .++.|++-..|+..+.+
T Consensus 95 rAa~~LQkal~~~~~v~~DGvIG~~TLaAl~~ 126 (252)
T COG3926 95 RAAKWLQKALGPAYTVRVDGVIGAQTLAALKK 126 (252)
T ss_pred hHHHHHHHHhccCCcccccCcccHHHHHHHHh
Confidence 68999999999 99999999999998764
No 30
>PF07236 Phytoreo_S7: Phytoreovirus S7 protein; InterPro: IPR009873 This family consists of several Phytoreovirus S7 proteins which are thought to be viral core proteins [].; GO: 0019012 virion; PDB: 1UF2_K.
Probab=23.91 E-value=26 Score=32.94 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCccccCCHHHHHHHhCCCCCcccCCC
Q 039712 3 LESTIKTCQLNFNLKSTGFLDANTVAKMRTPRCGVADIVN 42 (211)
Q Consensus 3 ~~~Ai~~fQ~~~~L~~TG~lD~~T~~~M~~pRCG~pD~~~ 42 (211)
+..||+-|..+.++..+|.+|++|+.+++.|=--+=++.+
T Consensus 206 i~~a~kyF~~yv~~~~~g~~d~at~i~LN~p~~elfs~~~ 245 (506)
T PF07236_consen 206 IMKAIKYFRNYVNNQSSGSMDQATRILLNTPFKELFSVEN 245 (506)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHhhhhhhcCCCChHHHHHhcCcHHHHhcccC
Confidence 4679999999999999999999999999998655544433
No 31
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=20.76 E-value=4.4e+02 Score=21.44 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHccCCcceEeccCCCCcceEEEeeeccCCCCCCCCCCCCCCCccccccC
Q 039712 87 TPVARAFQTWAANTQFRFSKIEDFAGADIKISFESRNHGDGRPFDGRGGPDGTLAHAFA 145 (211)
Q Consensus 87 ~~i~~Af~~Ws~v~~l~F~ev~~~~~aDI~I~F~~~~hgd~~~fDG~g~~~g~lAhAf~ 145 (211)
...-.+|..|..-....-. .+....|+.+.|...+.... ++++ ++++.||.
T Consensus 70 ~~~L~~F~~w~~~~~~~~~--~~~~~~D~a~llt~~d~~~~---~~~~---~~~G~A~~ 120 (207)
T cd04273 70 QKSLKSFCRWQKKLNPPND--SDPEHHDHAILLTRQDICRS---NGNC---DTLGLAPV 120 (207)
T ss_pred HHHHHHHHHHHHHcCCccc--ccccccceEEEEeeeccccc---CCCC---CceEEecc
Confidence 3457899999764332110 11236888888877654322 4677 88999975
Done!