BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039715
(805 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HRD|A Chain A, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|E Chain E, Crystal Structure Of Nicotinate Dehydrogenase
Length = 425
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 37/86 (43%)
Query: 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHY 684
IH + I ++ D + + +++ + Y+ R + G+S+ +N+GM+
Sbjct: 144 IHGDTNIHQVKHLEYGDVDAAFKQCDIVVEDTYSTHRLTHMFIEPDAGVSYYDNEGMLTV 203
Query: 685 FRAGDTSHADMNIIRGMLEWLNMKSR 710
+ H D + GML N K R
Sbjct: 204 VVSTQNPHYDRGEVAGMLALPNSKVR 229
>pdb|2EQA|A Chain A, Crystal Structure Of The Hypothetical Sua5 Protein From
Sulfolobus Tokodaii
pdb|4E1B|A Chain A, Re-Refinement Of Pdb Entry 2eqa - Sua5 Protein From
Sulfolobus Tokodaii With Bound
Threonylcarbamoyladenylate
Length = 352
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 182 CVYKLGHDSNAFVGTALIDAFSVCG-CVEFARKVFDGLFNDCFEEALNFFSQMRAVG--F 238
VY LG +NAF G A + F V+ V FN FE A + ++ +
Sbjct: 36 TVYGLG--ANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDIPDKVLEIAQIV 93
Query: 239 KPNNFTFAFVLK--------ACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKS 290
P TF VLK GLDT+ V AH AL+ E + +A +L T+
Sbjct: 94 WPGPLTF--VLKKTERVPKEVTAGLDTVAVRXPAHPIALQLIRESGVPIAAPSANLATRP 151
>pdb|3AJE|A Chain A, Crystal Structure Of S. Tokodaii Sua5 Complexed With
L-Threonine And Amppnp
Length = 352
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 182 CVYKLGHDSNAFVGTALIDAFSVCG-CVEFARKVFDGLFNDCFEEALNFFSQMRAVG--F 238
VY LG +NAF G A + F V+ V FN FE A + ++ +
Sbjct: 36 TVYGLG--ANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDIPDKVLEIAQIV 93
Query: 239 KPNNFTFAFVLK--------ACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKS 290
P TF VLK GLDT+ V AH AL+ E + +A +L T+
Sbjct: 94 WPGPLTF--VLKKTERVPKEVTAGLDTVAVRMPAHPIALQLIRESGVPIAAPSANLATRP 151
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 29 SAQAALSTQQCSNSTTTPITFSVSEFNS 56
SA AL++++ S STT P FS+ EF +
Sbjct: 328 SAGLALASERTSGSTTLPFDFSILEFTA 355
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 29 SAQAALSTQQCSNSTTTPITFSVSEFNS 56
SA AL++++ S STT P FS+ EF +
Sbjct: 328 SAGLALASERTSGSTTLPFDFSILEFTA 355
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 11/106 (10%)
Query: 395 ENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKM---LEEQVPATEVTYSSVL 451
E +E+ E H N + Y +L GK M + +P E+TY V
Sbjct: 267 ERYIEVIPEIDMPGHT--NAALASYGELNPDGKRKAMRTDTAVGYSTLMPRAEITYQFVE 324
Query: 452 RACASLAALEPGMQVHC------LTVKANYDMDVVVANALIDMYAK 491
+ LAA+ P +H T A+YD A+ + Y K
Sbjct: 325 DVISELAAISPSPYIHLGGDESNATSAADYDYFFGRVTAIANSYGK 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,189,544
Number of Sequences: 62578
Number of extensions: 854050
Number of successful extensions: 2348
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2342
Number of HSP's gapped (non-prelim): 11
length of query: 805
length of database: 14,973,337
effective HSP length: 107
effective length of query: 698
effective length of database: 8,277,491
effective search space: 5777688718
effective search space used: 5777688718
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)