Query 039715
Match_columns 805
No_of_seqs 920 out of 5067
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:29:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7E-143 2E-147 1265.3 87.0 782 12-803 49-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-120 4E-125 1049.1 69.4 602 189-805 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4.5E-79 9.8E-84 721.8 65.1 678 87-801 47-747 (857)
4 PLN03218 maturation of RBCL 1; 100.0 3.5E-69 7.6E-74 622.9 57.0 532 53-614 367-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 8.6E-66 1.9E-70 594.2 52.2 470 88-579 84-561 (697)
6 PLN03218 maturation of RBCL 1; 100.0 2.6E-63 5.6E-68 574.2 58.1 522 87-642 366-909 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.3E-34 2E-38 343.5 68.9 634 14-667 193-891 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-33 3.8E-38 341.0 69.3 635 11-668 156-824 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.5E-33 3.2E-38 238.6 8.2 106 672-795 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 2.5E-25 5.4E-30 270.1 67.0 591 59-668 31-732 (1157)
11 PRK11447 cellulose synthase su 100.0 6.9E-24 1.5E-28 257.6 56.9 560 96-668 33-692 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1.8E-21 3.8E-26 225.4 60.5 572 58-668 44-732 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.2E-20 2.6E-25 218.5 58.0 531 102-668 55-698 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 3.5E-22 7.6E-27 203.9 33.7 443 208-666 52-509 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 2.9E-21 6.3E-26 197.3 26.8 407 249-668 55-477 (966)
16 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-17 3.6E-22 189.7 43.0 404 250-668 135-563 (615)
17 KOG2002 TPR-containing nuclear 99.8 1.8E-15 3.8E-20 164.0 49.6 543 107-661 146-764 (1018)
18 KOG2002 TPR-containing nuclear 99.8 1.3E-15 2.7E-20 165.1 47.8 602 55-668 40-737 (1018)
19 PRK11788 tetratricopeptide rep 99.8 1.3E-17 2.8E-22 181.0 32.5 294 311-641 38-346 (389)
20 PRK10049 pgaA outer membrane p 99.8 1.8E-16 3.9E-21 184.4 43.4 398 244-650 17-464 (765)
21 PRK15174 Vi polysaccharide exp 99.8 1.1E-16 2.3E-21 182.3 39.2 350 289-647 17-386 (656)
22 PRK11788 tetratricopeptide rep 99.8 3.7E-17 8E-22 177.3 32.5 293 284-582 42-354 (389)
23 TIGR00990 3a0801s09 mitochondr 99.8 6.9E-16 1.5E-20 176.4 42.5 410 220-648 140-577 (615)
24 PRK10049 pgaA outer membrane p 99.8 5.9E-16 1.3E-20 180.1 41.5 385 275-668 13-448 (765)
25 PRK15174 Vi polysaccharide exp 99.8 9.9E-16 2.2E-20 174.3 36.1 316 343-668 42-373 (656)
26 PRK14574 hmsH outer membrane p 99.8 2.4E-14 5.2E-19 163.1 46.8 422 219-650 46-521 (822)
27 KOG4422 Uncharacterized conser 99.8 4.3E-14 9.3E-19 139.4 39.7 319 56-391 116-481 (625)
28 PRK14574 hmsH outer membrane p 99.7 5.4E-14 1.2E-18 160.3 44.1 408 251-668 43-505 (822)
29 KOG0495 HAT repeat protein [RN 99.7 1.4E-10 3E-15 120.9 54.2 577 53-668 243-872 (913)
30 KOG0495 HAT repeat protein [RN 99.6 2.4E-10 5.1E-15 119.2 52.2 493 132-653 386-891 (913)
31 KOG2076 RNA polymerase III tra 99.6 1.8E-11 3.8E-16 132.7 42.9 540 103-660 151-787 (895)
32 KOG2003 TPR repeat-containing 99.6 1.1E-11 2.5E-16 123.1 37.9 272 386-664 427-711 (840)
33 KOG4422 Uncharacterized conser 99.6 3.8E-11 8.3E-16 118.9 38.6 405 220-643 128-591 (625)
34 KOG2076 RNA polymerase III tra 99.6 4.5E-10 9.8E-15 122.0 49.8 149 66-217 149-305 (895)
35 KOG4318 Bicoid mRNA stability 99.6 1.6E-11 3.5E-16 132.1 34.0 201 449-672 464-678 (1088)
36 PF13429 TPR_15: Tetratricopep 99.5 1.5E-14 3.2E-19 148.5 9.6 248 416-668 15-269 (280)
37 KOG2003 TPR repeat-containing 99.5 3E-10 6.6E-15 113.1 37.6 465 94-595 204-708 (840)
38 KOG1126 DNA-binding cell divis 99.5 1.9E-12 4.1E-17 135.9 20.9 266 393-668 334-612 (638)
39 KOG1126 DNA-binding cell divis 99.5 3.6E-12 7.8E-17 133.9 22.8 198 445-648 422-626 (638)
40 KOG1155 Anaphase-promoting com 99.5 3.6E-11 7.8E-16 120.6 27.9 342 284-668 171-528 (559)
41 KOG1173 Anaphase-promoting com 99.5 2.4E-10 5.3E-15 117.7 33.0 253 409-668 244-510 (611)
42 PRK10747 putative protoheme IX 99.5 5.3E-11 1.1E-15 127.9 29.5 255 354-643 129-391 (398)
43 KOG4318 Bicoid mRNA stability 99.5 5.6E-10 1.2E-14 120.5 36.0 263 76-358 10-286 (1088)
44 KOG1155 Anaphase-promoting com 99.4 2.9E-09 6.2E-14 107.2 38.3 361 237-605 159-531 (559)
45 TIGR00540 hemY_coli hemY prote 99.4 2.3E-10 5E-15 123.7 33.1 291 319-641 95-398 (409)
46 KOG1915 Cell cycle control pro 99.4 3.5E-08 7.5E-13 99.6 45.2 423 66-538 83-535 (677)
47 TIGR00540 hemY_coli hemY prote 99.4 1.1E-10 2.3E-15 126.3 28.4 282 288-607 95-396 (409)
48 PRK10747 putative protoheme IX 99.4 1.1E-10 2.5E-15 125.3 27.8 268 391-668 97-382 (398)
49 KOG0547 Translocase of outer m 99.4 9.1E-10 2E-14 111.4 31.7 207 456-668 338-558 (606)
50 KOG1915 Cell cycle control pro 99.4 1.5E-08 3.2E-13 102.2 39.6 440 176-641 92-584 (677)
51 PF13429 TPR_15: Tetratricopep 99.4 2.6E-12 5.7E-17 131.8 11.6 252 315-571 15-274 (280)
52 COG2956 Predicted N-acetylgluc 99.4 1.4E-09 2.9E-14 104.6 28.2 217 320-538 47-277 (389)
53 KOG0985 Vesicle coat protein c 99.3 1.6E-06 3.4E-11 95.3 51.1 139 509-668 1103-1241(1666)
54 KOG1173 Anaphase-promoting com 99.3 7E-09 1.5E-13 107.2 31.4 493 51-583 11-524 (611)
55 KOG1174 Anaphase-promoting com 99.3 4.6E-08 1E-12 97.1 35.8 369 280-654 100-512 (564)
56 KOG0547 Translocase of outer m 99.3 6.3E-09 1.4E-13 105.5 30.1 398 219-644 127-568 (606)
57 KOG4162 Predicted calmodulin-b 99.3 2.3E-08 5.1E-13 107.1 35.6 585 70-668 18-775 (799)
58 TIGR02521 type_IV_pilW type IV 99.3 5.6E-10 1.2E-14 111.4 22.6 191 477-668 29-224 (234)
59 KOG1840 Kinesin light chain [C 99.3 9.2E-10 2E-14 117.5 24.4 224 445-668 200-471 (508)
60 KOG2047 mRNA splicing factor [ 99.3 3.2E-06 7E-11 89.0 48.4 159 59-218 105-274 (835)
61 COG3071 HemY Uncharacterized e 99.3 1.6E-08 3.5E-13 100.6 29.8 282 321-641 97-389 (400)
62 KOG2047 mRNA splicing factor [ 99.2 5.6E-07 1.2E-11 94.6 41.0 272 356-630 360-711 (835)
63 PF13041 PPR_2: PPR repeat fam 99.2 1.5E-11 3.2E-16 88.2 5.5 50 120-169 1-50 (50)
64 KOG3616 Selective LIM binding 99.2 1.6E-07 3.4E-12 99.4 37.0 213 416-668 713-929 (1636)
65 COG3071 HemY Uncharacterized e 99.2 8.7E-08 1.9E-12 95.5 30.5 291 219-543 96-394 (400)
66 PRK12370 invasion protein regu 99.1 6.9E-09 1.5E-13 116.7 24.6 236 424-668 276-528 (553)
67 PF13041 PPR_2: PPR repeat fam 99.1 1.2E-10 2.5E-15 83.5 6.8 50 508-557 1-50 (50)
68 COG2956 Predicted N-acetylgluc 99.1 4.3E-08 9.3E-13 94.5 25.8 280 356-640 48-345 (389)
69 KOG1840 Kinesin light chain [C 99.1 5.3E-08 1.2E-12 104.2 29.3 232 379-641 200-478 (508)
70 KOG4162 Predicted calmodulin-b 99.1 3.2E-07 7E-12 98.6 34.6 133 511-648 651-789 (799)
71 KOG0985 Vesicle coat protein c 99.1 5.9E-06 1.3E-10 91.0 43.8 113 409-532 1104-1216(1666)
72 PRK11189 lipoprotein NlpI; Pro 99.1 2E-08 4.3E-13 103.3 24.1 234 423-664 40-288 (296)
73 KOG3785 Uncharacterized conser 99.1 3.9E-07 8.4E-12 88.8 30.9 309 292-644 166-492 (557)
74 KOG2376 Signal recognition par 99.1 2.8E-06 6E-11 88.9 38.8 433 212-668 13-512 (652)
75 PRK11189 lipoprotein NlpI; Pro 99.1 8.7E-09 1.9E-13 105.9 19.9 201 459-668 41-257 (296)
76 TIGR02521 type_IV_pilW type IV 99.1 3.6E-08 7.8E-13 98.2 23.9 197 409-644 31-234 (234)
77 PRK12370 invasion protein regu 99.1 1.2E-08 2.6E-13 114.7 21.6 198 459-662 276-490 (553)
78 KOG1127 TPR repeat-containing 99.0 6.1E-07 1.3E-11 98.8 32.2 124 92-218 493-622 (1238)
79 COG3063 PilF Tfp pilus assembl 99.0 1.1E-08 2.4E-13 94.3 16.0 152 512-668 37-194 (250)
80 KOG3616 Selective LIM binding 99.0 4.5E-06 9.7E-11 88.8 36.9 492 103-668 456-1016(1636)
81 KOG1174 Anaphase-promoting com 99.0 7.3E-06 1.6E-10 81.9 35.1 262 273-538 228-499 (564)
82 KOG1156 N-terminal acetyltrans 99.0 1.1E-05 2.5E-10 85.4 38.2 437 220-668 20-503 (700)
83 KOG1127 TPR repeat-containing 99.0 1.2E-05 2.6E-10 89.0 39.3 157 58-218 494-656 (1238)
84 KOG1129 TPR repeat-containing 99.0 1.7E-08 3.7E-13 97.1 14.9 218 413-668 227-450 (478)
85 KOG1129 TPR repeat-containing 98.9 2.7E-08 5.8E-13 95.8 14.8 242 376-653 221-469 (478)
86 KOG2376 Signal recognition par 98.9 6.1E-05 1.3E-09 79.2 38.3 216 129-374 19-255 (652)
87 PF12569 NARP1: NMDA receptor- 98.9 2E-05 4.3E-10 85.9 36.0 250 412-668 197-512 (517)
88 KOG3785 Uncharacterized conser 98.9 2E-06 4.3E-11 84.0 24.9 181 483-668 289-482 (557)
89 KOG1125 TPR repeat-containing 98.8 5.8E-08 1.3E-12 101.1 14.5 208 457-668 298-519 (579)
90 KOG1156 N-terminal acetyltrans 98.8 6.1E-05 1.3E-09 80.0 36.0 451 57-538 9-510 (700)
91 COG3063 PilF Tfp pilus assembl 98.8 1.2E-06 2.7E-11 81.0 20.5 191 454-648 45-242 (250)
92 PF12569 NARP1: NMDA receptor- 98.8 1.2E-05 2.5E-10 87.6 30.7 124 513-641 197-333 (517)
93 KOG0624 dsRNA-activated protei 98.8 7.7E-06 1.7E-10 79.8 25.2 279 383-668 43-362 (504)
94 KOG3617 WD40 and TPR repeat-co 98.7 0.00014 3E-09 79.0 36.2 331 54-434 724-1105(1416)
95 KOG0548 Molecular co-chaperone 98.7 5.5E-06 1.2E-10 86.0 24.8 207 448-668 228-447 (539)
96 PRK15359 type III secretion sy 98.7 3.9E-07 8.4E-12 82.3 14.1 124 530-660 13-139 (144)
97 PF04733 Coatomer_E: Coatomer 98.7 3.3E-07 7.2E-12 92.7 14.8 236 388-665 11-253 (290)
98 KOG3617 WD40 and TPR repeat-co 98.7 0.00014 3E-09 78.9 34.6 228 343-608 912-1172(1416)
99 cd05804 StaR_like StaR_like; a 98.7 2.5E-05 5.4E-10 83.5 29.3 249 416-668 50-328 (355)
100 PF04733 Coatomer_E: Coatomer 98.7 2.3E-06 5E-11 86.7 19.6 218 380-607 37-262 (290)
101 PRK04841 transcriptional regul 98.7 7.5E-05 1.6E-09 90.7 36.5 361 283-644 347-762 (903)
102 cd05804 StaR_like StaR_like; a 98.6 9.2E-05 2E-09 79.1 32.3 252 354-643 54-337 (355)
103 KOG0548 Molecular co-chaperone 98.6 3.2E-05 6.9E-10 80.5 25.5 164 485-660 304-473 (539)
104 PRK04841 transcriptional regul 98.6 4.3E-05 9.3E-10 92.8 30.5 349 314-668 347-752 (903)
105 KOG0624 dsRNA-activated protei 98.5 0.00013 2.7E-09 71.6 26.5 193 455-653 166-381 (504)
106 KOG1914 mRNA cleavage and poly 98.5 0.0024 5.2E-08 66.8 39.8 150 425-575 347-502 (656)
107 KOG4340 Uncharacterized conser 98.5 8.2E-05 1.8E-09 71.4 23.8 347 238-607 6-372 (459)
108 KOG1125 TPR repeat-containing 98.5 8.9E-06 1.9E-10 85.2 18.8 214 354-572 296-525 (579)
109 KOG4340 Uncharacterized conser 98.5 0.00021 4.6E-09 68.6 26.2 236 289-537 124-373 (459)
110 TIGR03302 OM_YfiO outer membra 98.5 8.5E-06 1.8E-10 81.2 18.3 171 478-668 32-224 (235)
111 PF12854 PPR_1: PPR repeat 98.4 2.1E-07 4.6E-12 59.7 3.4 33 86-118 2-34 (34)
112 PLN02789 farnesyltranstransfer 98.4 3.1E-05 6.7E-10 79.6 21.1 196 459-660 52-268 (320)
113 COG5010 TadD Flp pilus assembl 98.4 4.1E-06 8.8E-11 79.5 13.2 125 542-668 63-189 (257)
114 PRK15359 type III secretion sy 98.4 2.4E-06 5.1E-11 77.2 10.7 98 566-668 14-113 (144)
115 TIGR03302 OM_YfiO outer membra 98.4 1.7E-05 3.6E-10 79.1 18.0 182 443-644 32-234 (235)
116 PRK10370 formate-dependent nit 98.4 3.5E-05 7.7E-10 73.6 19.0 155 486-653 23-184 (198)
117 PF12854 PPR_1: PPR repeat 98.4 5.8E-07 1.3E-11 57.6 4.3 33 576-608 2-34 (34)
118 KOG1128 Uncharacterized conser 98.3 1.8E-05 3.8E-10 85.2 16.4 216 374-607 394-613 (777)
119 PRK15179 Vi polysaccharide bio 98.3 5.1E-05 1.1E-09 85.9 21.3 138 509-651 85-226 (694)
120 PRK15363 pathogenicity island 98.3 4.8E-06 1E-10 73.7 10.2 117 580-709 34-153 (157)
121 PRK15179 Vi polysaccharide bio 98.3 4E-05 8.7E-10 86.8 19.4 125 541-668 82-209 (694)
122 PRK10370 formate-dependent nit 98.3 3.5E-05 7.7E-10 73.6 16.1 137 517-668 23-165 (198)
123 KOG1914 mRNA cleavage and poly 98.3 0.0068 1.5E-07 63.6 33.1 77 53-131 17-95 (656)
124 KOG2053 Mitochondrial inherita 98.3 0.015 3.3E-07 64.8 41.1 513 68-611 21-609 (932)
125 COG5010 TadD Flp pilus assembl 98.2 0.00012 2.7E-09 69.6 18.0 151 514-668 70-223 (257)
126 KOG1128 Uncharacterized conser 98.2 2.5E-05 5.5E-10 84.0 14.6 180 474-668 393-574 (777)
127 KOG1070 rRNA processing protei 98.1 0.00037 8.1E-09 80.3 22.5 226 409-641 1458-1699(1710)
128 KOG1070 rRNA processing protei 98.1 0.00018 3.8E-09 82.8 19.8 192 446-641 1460-1662(1710)
129 PRK14720 transcript cleavage f 98.1 0.00027 5.9E-09 80.9 21.6 232 377-658 30-268 (906)
130 PLN02789 farnesyltranstransfer 98.1 0.0011 2.3E-08 68.4 24.2 220 418-644 46-304 (320)
131 KOG3081 Vesicle coat complex C 98.1 0.00093 2E-08 63.7 21.1 75 594-668 186-262 (299)
132 COG4783 Putative Zn-dependent 98.1 0.00082 1.8E-08 69.7 22.5 111 555-668 316-429 (484)
133 TIGR00756 PPR pentatricopeptid 98.1 5.7E-06 1.2E-10 54.0 4.4 35 123-157 1-35 (35)
134 TIGR02552 LcrH_SycD type III s 98.1 3.7E-05 8E-10 69.0 10.9 86 583-668 19-106 (135)
135 COG4783 Putative Zn-dependent 98.1 0.00039 8.5E-09 72.0 19.1 135 512-668 308-446 (484)
136 TIGR02552 LcrH_SycD type III s 98.0 0.00011 2.3E-09 66.0 13.4 114 532-650 5-122 (135)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00018 3.9E-09 75.4 16.3 116 548-668 172-289 (395)
138 TIGR00756 PPR pentatricopeptid 98.0 9.8E-06 2.1E-10 52.8 4.4 35 511-545 1-35 (35)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00022 4.7E-09 74.8 16.0 126 481-611 171-298 (395)
140 KOG0553 TPR repeat-containing 98.0 0.00012 2.5E-09 71.2 12.4 107 555-664 91-200 (304)
141 KOG3060 Uncharacterized conser 97.9 0.0021 4.6E-08 60.9 19.9 167 484-653 57-231 (289)
142 PRK14720 transcript cleavage f 97.9 0.003 6.5E-08 72.6 25.3 87 445-546 117-203 (906)
143 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.5E-10 51.4 4.3 34 122-155 1-34 (34)
144 PF09976 TPR_21: Tetratricopep 97.9 0.00078 1.7E-08 61.1 16.0 124 513-640 15-145 (145)
145 KOG1538 Uncharacterized conser 97.9 0.0023 5.1E-08 68.0 21.0 271 154-529 553-823 (1081)
146 PF13812 PPR_3: Pentatricopept 97.8 3.6E-05 7.7E-10 49.7 4.3 33 511-543 2-34 (34)
147 KOG0550 Molecular chaperone (D 97.7 0.00049 1.1E-08 69.4 13.2 152 511-668 169-342 (486)
148 KOG0553 TPR repeat-containing 97.7 7.6E-05 1.7E-09 72.4 7.2 111 588-713 88-200 (304)
149 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00058 1.3E-08 59.5 11.9 104 548-651 5-114 (119)
150 PRK10153 DNA-binding transcrip 97.7 0.0013 2.9E-08 72.4 17.1 141 507-649 334-489 (517)
151 PF09976 TPR_21: Tetratricopep 97.7 0.0012 2.5E-08 59.9 13.9 120 547-668 14-139 (145)
152 KOG3060 Uncharacterized conser 97.7 0.014 3E-07 55.6 20.5 185 422-611 25-222 (289)
153 KOG3081 Vesicle coat complex C 97.7 0.012 2.6E-07 56.4 20.2 154 486-646 115-275 (299)
154 PF01535 PPR: PPR repeat; Int 97.7 5.8E-05 1.3E-09 47.5 3.6 31 123-153 1-31 (31)
155 PF13414 TPR_11: TPR repeat; P 97.6 8.1E-05 1.8E-09 57.5 4.9 57 612-668 2-59 (69)
156 PF13431 TPR_17: Tetratricopep 97.6 4.7E-05 1E-09 48.7 2.6 34 635-668 1-34 (34)
157 PLN03088 SGT1, suppressor of 97.6 0.00022 4.7E-09 75.3 9.1 106 552-660 9-117 (356)
158 PLN03088 SGT1, suppressor of 97.6 0.00092 2E-08 70.5 13.5 101 515-620 7-110 (356)
159 PRK02603 photosystem I assembl 97.6 0.0022 4.7E-08 60.2 14.5 130 509-662 34-166 (172)
160 PF01535 PPR: PPR repeat; Int 97.6 9E-05 1.9E-09 46.6 3.5 31 511-541 1-31 (31)
161 PF12895 Apc3: Anaphase-promot 97.6 6E-05 1.3E-09 61.0 3.3 81 558-638 2-83 (84)
162 cd00189 TPR Tetratricopeptide 97.6 0.00041 8.8E-09 57.2 8.6 83 586-668 5-89 (100)
163 CHL00033 ycf3 photosystem I as 97.5 0.0044 9.6E-08 57.8 15.8 123 510-663 35-167 (168)
164 PF13432 TPR_16: Tetratricopep 97.5 0.00034 7.4E-09 53.2 6.5 61 587-647 3-65 (65)
165 CHL00033 ycf3 photosystem I as 97.5 0.00061 1.3E-08 63.7 9.5 88 581-668 35-134 (168)
166 PF04840 Vps16_C: Vps16, C-ter 97.5 0.15 3.2E-06 52.6 27.0 106 382-503 181-286 (319)
167 COG3898 Uncharacterized membra 97.4 0.19 4.2E-06 50.9 26.6 233 422-668 133-384 (531)
168 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0012 2.7E-08 57.4 9.7 87 582-668 3-97 (119)
169 KOG2041 WD40 repeat protein [G 97.4 0.31 6.6E-06 53.1 28.5 344 189-604 689-1044(1189)
170 KOG2053 Mitochondrial inherita 97.4 0.42 9.2E-06 53.9 40.6 216 103-338 21-256 (932)
171 PF07079 DUF1347: Protein of u 97.3 0.26 5.6E-06 51.2 39.5 462 67-619 17-531 (549)
172 cd00189 TPR Tetratricopeptide 97.3 0.0021 4.6E-08 52.7 10.3 62 583-644 36-99 (100)
173 PF14938 SNAP: Soluble NSF att 97.3 0.25 5.3E-06 50.5 27.6 100 513-613 158-268 (282)
174 PF13432 TPR_16: Tetratricopep 97.3 0.00041 8.9E-09 52.8 5.1 50 619-668 3-52 (65)
175 PF12895 Apc3: Anaphase-promot 97.3 0.00078 1.7E-08 54.4 6.8 80 523-606 2-83 (84)
176 PRK02603 photosystem I assembl 97.3 0.0017 3.7E-08 60.9 9.9 87 581-667 35-126 (172)
177 PRK15363 pathogenicity island 97.3 0.012 2.5E-07 52.5 14.3 90 511-605 36-127 (157)
178 PF14559 TPR_19: Tetratricopep 97.3 0.00029 6.3E-09 54.2 3.8 44 625-668 3-46 (68)
179 COG4700 Uncharacterized protei 97.2 0.021 4.4E-07 51.6 15.3 123 541-668 85-214 (251)
180 PF05843 Suf: Suppressor of fo 97.2 0.0096 2.1E-07 60.6 15.4 135 511-648 2-142 (280)
181 PF06239 ECSIT: Evolutionarily 97.2 0.0012 2.6E-08 61.5 7.7 94 175-270 70-167 (228)
182 KOG2280 Vacuolar assembly/sort 97.2 0.56 1.2E-05 51.9 29.9 339 236-604 426-793 (829)
183 PRK15331 chaperone protein Sic 97.2 0.0031 6.7E-08 56.4 9.8 83 586-668 42-126 (165)
184 PF14559 TPR_19: Tetratricopep 97.2 0.00052 1.1E-08 52.8 4.4 62 593-654 3-66 (68)
185 PF13414 TPR_11: TPR repeat; P 97.1 0.00091 2E-08 51.6 5.5 65 580-644 2-69 (69)
186 KOG1130 Predicted G-alpha GTPa 97.1 0.0017 3.8E-08 65.4 8.5 251 418-668 26-336 (639)
187 PF04840 Vps16_C: Vps16, C-ter 97.1 0.41 8.9E-06 49.3 28.8 121 483-623 181-301 (319)
188 PF12688 TPR_5: Tetratrico pep 97.1 0.015 3.2E-07 50.0 12.7 92 515-606 6-100 (120)
189 KOG1538 Uncharacterized conser 97.1 0.063 1.4E-06 57.6 19.6 211 366-641 623-845 (1081)
190 PF14938 SNAP: Soluble NSF att 97.0 0.044 9.6E-07 56.0 18.2 116 516-646 100-229 (282)
191 PF13281 DUF4071: Domain of un 97.0 0.071 1.5E-06 55.3 19.1 163 484-649 146-341 (374)
192 PF13428 TPR_14: Tetratricopep 97.0 0.0011 2.3E-08 45.7 4.1 42 614-655 2-43 (44)
193 KOG0550 Molecular chaperone (D 96.9 0.18 4E-06 51.6 20.5 146 520-668 259-435 (486)
194 KOG2796 Uncharacterized conser 96.9 0.062 1.4E-06 51.4 16.1 167 381-549 139-323 (366)
195 COG3898 Uncharacterized membra 96.9 0.63 1.4E-05 47.4 25.0 116 250-371 271-391 (531)
196 COG4235 Cytochrome c biogenesi 96.9 0.022 4.7E-07 56.2 13.3 91 578-668 152-248 (287)
197 PF13371 TPR_9: Tetratricopept 96.8 0.002 4.4E-08 50.2 5.1 47 622-668 4-50 (73)
198 PRK10866 outer membrane biogen 96.8 0.08 1.7E-06 52.5 17.4 54 386-439 40-99 (243)
199 PF05843 Suf: Suppressor of fo 96.8 0.026 5.6E-07 57.5 14.4 133 411-547 3-142 (280)
200 PF12688 TPR_5: Tetratrico pep 96.8 0.0088 1.9E-07 51.4 9.0 81 588-668 8-96 (120)
201 PF08579 RPM2: Mitochondrial r 96.8 0.011 2.5E-07 48.7 9.1 31 223-253 85-115 (120)
202 PF13371 TPR_9: Tetratricopept 96.8 0.0037 8.1E-08 48.7 6.2 66 588-653 2-69 (73)
203 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0036 7.9E-08 65.4 7.6 56 613-668 75-133 (453)
204 PRK10153 DNA-binding transcrip 96.8 0.048 1E-06 60.3 16.6 60 511-572 421-480 (517)
205 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.98 2.1E-05 46.9 30.2 93 77-173 30-125 (660)
206 KOG1130 Predicted G-alpha GTPa 96.7 0.011 2.4E-07 59.8 9.8 255 317-572 26-342 (639)
207 COG4700 Uncharacterized protei 96.6 0.25 5.4E-06 44.9 16.8 124 476-604 86-216 (251)
208 PF08579 RPM2: Mitochondrial r 96.6 0.049 1.1E-06 45.1 11.3 81 512-593 27-116 (120)
209 KOG2280 Vacuolar assembly/sort 96.6 1.3 2.8E-05 49.2 25.2 127 59-186 440-575 (829)
210 PF10037 MRP-S27: Mitochondria 96.6 0.016 3.4E-07 61.4 10.9 116 124-254 68-185 (429)
211 PF06239 ECSIT: Evolutionarily 96.6 0.02 4.4E-07 53.5 10.1 117 239-371 44-167 (228)
212 PRK10803 tol-pal system protei 96.6 0.054 1.2E-06 54.1 14.0 94 556-649 154-253 (263)
213 PRK10866 outer membrane biogen 96.6 0.45 9.7E-06 47.2 20.4 67 408-474 31-99 (243)
214 KOG2796 Uncharacterized conser 96.5 0.22 4.8E-06 47.8 16.4 169 482-650 139-323 (366)
215 PF07079 DUF1347: Protein of u 96.5 1.4 3.1E-05 45.9 35.0 56 612-668 459-516 (549)
216 PF13424 TPR_12: Tetratricopep 96.4 0.0043 9.3E-08 49.2 4.3 60 583-642 7-75 (78)
217 PF10037 MRP-S27: Mitochondria 96.4 0.034 7.3E-07 59.0 12.0 116 276-391 65-186 (429)
218 COG0457 NrfG FOG: TPR repeat [ 96.3 1.1 2.5E-05 43.6 25.6 186 479-668 59-257 (291)
219 PRK10803 tol-pal system protei 96.2 0.052 1.1E-06 54.2 11.7 85 521-607 154-243 (263)
220 PF13525 YfiO: Outer membrane 96.1 0.88 1.9E-05 43.8 19.5 58 415-472 11-70 (203)
221 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.26 5.7E-06 52.0 15.1 61 478-538 74-140 (453)
222 KOG1941 Acetylcholine receptor 95.9 0.1 2.2E-06 52.3 11.4 188 481-668 45-267 (518)
223 KOG2041 WD40 repeat protein [G 95.9 2.7 5.9E-05 46.2 22.6 206 71-307 678-908 (1189)
224 COG0457 NrfG FOG: TPR repeat [ 95.8 2 4.3E-05 41.8 24.0 196 446-645 61-268 (291)
225 PF13525 YfiO: Outer membrane 95.8 0.73 1.6E-05 44.4 17.3 163 484-667 10-198 (203)
226 KOG4555 TPR repeat-containing 95.8 0.048 1E-06 46.1 7.6 80 589-668 51-136 (175)
227 PRK11906 transcriptional regul 95.8 0.23 4.9E-06 52.5 14.3 139 526-668 274-428 (458)
228 PF00515 TPR_1: Tetratricopept 95.7 0.017 3.8E-07 36.9 3.8 33 614-646 2-34 (34)
229 KOG0543 FKBP-type peptidyl-pro 95.6 0.026 5.6E-07 57.8 6.2 82 614-710 258-339 (397)
230 PF07719 TPR_2: Tetratricopept 95.6 0.03 6.4E-07 35.7 4.5 33 614-646 2-34 (34)
231 PF13424 TPR_12: Tetratricopep 95.5 0.013 2.9E-07 46.3 3.3 55 614-668 6-67 (78)
232 PF03704 BTAD: Bacterial trans 95.3 0.4 8.6E-06 43.3 12.9 70 512-583 64-138 (146)
233 COG4235 Cytochrome c biogenesi 95.3 0.55 1.2E-05 46.6 14.1 100 545-647 156-261 (287)
234 PF12921 ATP13: Mitochondrial 95.1 0.29 6.2E-06 42.6 10.5 49 541-589 48-96 (126)
235 COG5107 RNA14 Pre-mRNA 3'-end 95.0 5.4 0.00012 41.8 36.5 81 53-134 39-121 (660)
236 PF13512 TPR_18: Tetratricopep 95.0 0.39 8.4E-06 42.2 10.9 61 588-648 17-82 (142)
237 PF13512 TPR_18: Tetratricopep 94.9 0.52 1.1E-05 41.5 11.5 19 629-647 115-133 (142)
238 KOG2114 Vacuolar assembly/sort 94.9 9 0.0002 43.5 25.6 180 93-306 336-519 (933)
239 PF08631 SPO22: Meiosis protei 94.8 5.5 0.00012 40.5 23.3 98 446-545 86-192 (278)
240 KOG2066 Vacuolar assembly/sort 94.7 9.3 0.0002 43.1 25.7 76 277-355 392-467 (846)
241 PRK11906 transcriptional regul 94.6 0.38 8.2E-06 50.9 11.6 109 560-668 273-393 (458)
242 KOG1920 IkappaB kinase complex 94.3 15 0.00032 43.6 24.2 247 190-509 789-1056(1265)
243 PF12921 ATP13: Mitochondrial 94.3 0.62 1.3E-05 40.5 10.5 81 546-626 3-101 (126)
244 PF03704 BTAD: Bacterial trans 94.2 0.48 1E-05 42.8 10.3 54 615-668 64-117 (146)
245 KOG0543 FKBP-type peptidyl-pro 94.1 0.52 1.1E-05 48.6 11.1 130 517-668 215-346 (397)
246 PF04184 ST7: ST7 protein; In 94.1 3.7 8.1E-05 43.8 17.3 97 554-650 268-383 (539)
247 COG4105 ComL DNA uptake lipopr 94.0 3 6.5E-05 40.6 15.4 160 490-668 45-225 (254)
248 KOG3941 Intermediate in Toll s 94.0 0.43 9.4E-06 46.3 9.5 110 111-257 54-173 (406)
249 COG2976 Uncharacterized protei 93.9 3.3 7.1E-05 38.4 14.5 115 528-647 70-193 (207)
250 COG3118 Thioredoxin domain-con 93.7 1.5 3.2E-05 43.5 12.8 111 554-668 143-257 (304)
251 smart00299 CLH Clathrin heavy 93.6 2.7 5.8E-05 37.5 14.0 64 548-624 72-136 (140)
252 KOG1258 mRNA processing protei 93.6 14 0.0003 40.6 33.0 184 477-663 295-491 (577)
253 COG4105 ComL DNA uptake lipopr 93.4 6.2 0.00013 38.5 16.3 67 389-455 45-117 (254)
254 smart00299 CLH Clathrin heavy 93.2 2.7 5.9E-05 37.5 13.3 126 59-203 10-136 (140)
255 KOG3941 Intermediate in Toll s 93.1 1.3 2.8E-05 43.2 11.1 102 55-172 66-173 (406)
256 PF13181 TPR_8: Tetratricopept 93.1 0.14 3.1E-06 32.4 3.5 33 614-646 2-34 (34)
257 KOG1585 Protein required for f 93.0 3.6 7.8E-05 39.5 13.7 43 192-234 91-137 (308)
258 COG1729 Uncharacterized protei 93.0 0.86 1.9E-05 44.7 10.1 82 522-605 153-239 (262)
259 PF02259 FAT: FAT domain; Int 92.8 15 0.00032 38.8 21.3 154 508-664 144-309 (352)
260 KOG4555 TPR repeat-containing 92.7 0.71 1.5E-05 39.3 7.8 52 519-572 52-104 (175)
261 PF04053 Coatomer_WDAD: Coatom 92.6 1.9 4.2E-05 46.7 13.3 131 244-403 297-427 (443)
262 PF13281 DUF4071: Domain of un 92.6 8 0.00017 40.5 17.0 70 385-454 148-227 (374)
263 PRK15331 chaperone protein Sic 92.5 2.1 4.6E-05 38.7 11.1 17 522-538 49-65 (165)
264 KOG2114 Vacuolar assembly/sort 92.5 24 0.00051 40.4 29.3 74 587-661 711-785 (933)
265 KOG1920 IkappaB kinase complex 92.4 19 0.00042 42.7 21.1 153 391-606 893-1051(1265)
266 PF04053 Coatomer_WDAD: Coatom 92.4 3.2 6.9E-05 45.1 14.5 131 57-216 296-426 (443)
267 PF10300 DUF3808: Protein of u 92.3 3.8 8.3E-05 45.1 15.4 147 514-663 192-356 (468)
268 COG1729 Uncharacterized protei 92.1 1.2 2.6E-05 43.7 9.8 101 547-648 144-250 (262)
269 PF04184 ST7: ST7 protein; In 91.9 3.9 8.4E-05 43.6 13.8 53 616-668 262-316 (539)
270 KOG4648 Uncharacterized conser 91.9 0.23 4.9E-06 49.4 4.6 92 552-646 104-198 (536)
271 PF13176 TPR_7: Tetratricopept 91.6 0.27 5.9E-06 31.8 3.4 29 615-643 1-29 (36)
272 PF10300 DUF3808: Protein of u 91.6 8.8 0.00019 42.3 17.1 111 459-572 248-374 (468)
273 KOG2610 Uncharacterized conser 91.6 1.6 3.4E-05 43.7 9.9 112 522-636 115-232 (491)
274 KOG4234 TPR repeat-containing 91.2 0.32 6.9E-06 44.7 4.5 78 591-668 105-189 (271)
275 PF09613 HrpB1_HrpK: Bacterial 91.0 7.2 0.00016 35.2 12.7 103 553-659 18-122 (160)
276 COG4649 Uncharacterized protei 90.8 13 0.00027 33.9 16.2 119 520-641 68-195 (221)
277 PF00637 Clathrin: Region in C 90.4 0.23 5.1E-06 44.7 3.0 55 162-216 12-66 (143)
278 COG3118 Thioredoxin domain-con 90.0 22 0.00048 35.5 17.3 116 454-573 144-264 (304)
279 PF00515 TPR_1: Tetratricopept 89.9 0.7 1.5E-05 29.2 4.2 32 511-544 2-33 (34)
280 PF00637 Clathrin: Region in C 89.9 0.082 1.8E-06 47.7 -0.4 129 61-207 12-140 (143)
281 PF04097 Nic96: Nup93/Nic96; 89.8 43 0.00093 38.5 23.1 21 591-611 515-535 (613)
282 KOG1941 Acetylcholine receptor 89.7 9 0.0002 39.0 13.3 126 516-641 128-274 (518)
283 KOG1585 Protein required for f 89.7 20 0.00044 34.6 15.9 24 412-435 34-57 (308)
284 COG4785 NlpI Lipoprotein NlpI, 89.6 12 0.00027 35.3 13.2 170 491-668 77-258 (297)
285 PF13428 TPR_14: Tetratricopep 89.4 1.1 2.5E-05 30.4 5.1 33 512-546 3-35 (44)
286 PF13176 TPR_7: Tetratricopept 89.4 0.81 1.8E-05 29.5 4.2 26 512-537 1-26 (36)
287 PF09205 DUF1955: Domain of un 89.4 13 0.00029 32.1 12.7 52 616-667 89-140 (161)
288 PF04097 Nic96: Nup93/Nic96; 89.0 18 0.00038 41.5 17.3 214 277-506 112-354 (613)
289 PF07035 Mic1: Colon cancer-as 88.8 12 0.00027 34.2 12.7 135 227-373 14-150 (167)
290 COG3629 DnrI DNA-binding trans 88.8 2.9 6.2E-05 41.8 9.4 76 479-554 153-236 (280)
291 PRK10941 hypothetical protein; 88.8 0.84 1.8E-05 45.6 5.8 81 615-707 183-263 (269)
292 PF09205 DUF1955: Domain of un 88.8 15 0.00032 31.8 13.4 58 516-574 92-149 (161)
293 KOG4648 Uncharacterized conser 88.1 1.4 3E-05 44.2 6.6 86 517-613 104-198 (536)
294 COG4649 Uncharacterized protei 87.0 7.3 0.00016 35.3 9.7 117 490-607 69-193 (221)
295 PRK09687 putative lyase; Provi 86.9 38 0.00082 34.4 26.6 74 478-556 205-278 (280)
296 PF14853 Fis1_TPR_C: Fis1 C-te 86.6 1.5 3.2E-05 31.3 4.3 36 618-653 6-41 (53)
297 PF07035 Mic1: Colon cancer-as 86.6 26 0.00056 32.2 15.5 131 181-337 18-149 (167)
298 KOG2610 Uncharacterized conser 86.1 9.6 0.00021 38.4 11.0 154 491-649 115-285 (491)
299 KOG1464 COP9 signalosome, subu 86.1 36 0.00078 33.3 18.7 218 412-641 68-327 (440)
300 PF07719 TPR_2: Tetratricopept 86.0 1.7 3.7E-05 27.2 4.2 31 512-544 3-33 (34)
301 PF10602 RPN7: 26S proteasome 85.9 19 0.00041 33.6 12.7 57 481-537 38-100 (177)
302 PF13170 DUF4003: Protein of u 85.8 13 0.00029 37.9 12.5 132 138-282 78-222 (297)
303 PF13374 TPR_10: Tetratricopep 85.6 1.7 3.7E-05 28.8 4.3 28 614-641 3-30 (42)
304 PRK12798 chemotaxis protein; R 85.6 53 0.0011 34.8 22.0 205 492-712 125-347 (421)
305 smart00028 TPR Tetratricopepti 85.2 1.5 3.3E-05 26.4 3.7 31 615-645 3-33 (34)
306 COG3629 DnrI DNA-binding trans 85.1 9.2 0.0002 38.3 10.6 79 510-590 153-236 (280)
307 PF13431 TPR_17: Tetratricopep 84.9 1.1 2.4E-05 28.5 2.7 20 581-600 13-32 (34)
308 PF13170 DUF4003: Protein of u 84.1 23 0.0005 36.2 13.3 63 527-590 160-226 (297)
309 PRK09687 putative lyase; Provi 83.8 53 0.0011 33.4 25.7 61 579-644 204-265 (280)
310 KOG2396 HAT (Half-A-TPR) repea 83.2 72 0.0016 34.5 30.0 62 516-578 466-529 (568)
311 KOG1586 Protein required for f 83.1 46 0.00099 32.1 13.8 24 624-647 165-188 (288)
312 PF09613 HrpB1_HrpK: Bacterial 83.1 14 0.00029 33.5 9.7 83 580-662 6-93 (160)
313 PF10602 RPN7: 26S proteasome 83.0 10 0.00022 35.4 9.5 96 511-608 37-140 (177)
314 PF11207 DUF2989: Protein of u 82.9 6 0.00013 37.1 7.7 75 592-667 118-198 (203)
315 KOG0276 Vesicle coat complex C 82.6 16 0.00035 39.9 11.6 144 491-668 598-742 (794)
316 PF13174 TPR_6: Tetratricopept 82.5 2.1 4.5E-05 26.6 3.4 30 617-646 4-33 (33)
317 PF04910 Tcf25: Transcriptiona 82.4 71 0.0015 33.8 18.3 155 476-644 37-224 (360)
318 PF08631 SPO22: Meiosis protei 82.2 61 0.0013 32.9 24.1 140 195-343 39-192 (278)
319 KOG4570 Uncharacterized conser 81.7 6.6 0.00014 39.2 7.8 102 84-187 57-165 (418)
320 KOG4570 Uncharacterized conser 81.5 12 0.00026 37.4 9.5 98 473-574 58-164 (418)
321 TIGR02508 type_III_yscG type I 80.9 25 0.00055 28.7 9.3 87 359-449 21-107 (115)
322 PF13181 TPR_8: Tetratricopept 80.7 2.5 5.5E-05 26.5 3.3 27 512-538 3-29 (34)
323 KOG4279 Serine/threonine prote 80.4 15 0.00033 41.1 10.7 182 411-646 203-399 (1226)
324 PF10345 Cohesin_load: Cohesin 80.1 1.2E+02 0.0026 34.9 36.6 169 92-269 60-252 (608)
325 PF13374 TPR_10: Tetratricopep 79.7 4.3 9.3E-05 26.8 4.4 28 511-538 3-30 (42)
326 PRK11619 lytic murein transgly 79.6 1.3E+02 0.0027 34.9 36.8 343 277-638 99-464 (644)
327 KOG1550 Extracellular protein 79.6 1.2E+02 0.0025 34.5 20.8 59 596-657 454-516 (552)
328 PRK11619 lytic murein transgly 79.5 1.3E+02 0.0027 34.8 32.2 260 383-655 104-384 (644)
329 TIGR02508 type_III_yscG type I 79.3 33 0.00072 28.1 9.8 62 486-550 46-107 (115)
330 PF02259 FAT: FAT domain; Int 78.9 90 0.002 32.8 18.0 61 581-641 146-212 (352)
331 KOG1258 mRNA processing protei 77.3 1.2E+02 0.0027 33.5 30.7 122 377-499 296-420 (577)
332 KOG0890 Protein kinase of the 77.3 2.5E+02 0.0054 37.0 23.4 299 351-668 1391-1723(2382)
333 KOG1464 COP9 signalosome, subu 76.0 25 0.00055 34.3 9.7 178 491-668 39-252 (440)
334 KOG2066 Vacuolar assembly/sort 75.5 1.6E+02 0.0034 33.9 24.1 23 313-335 510-532 (846)
335 PF06552 TOM20_plant: Plant sp 74.9 5.3 0.00012 36.6 4.7 34 629-662 51-84 (186)
336 TIGR02561 HrpB1_HrpK type III 74.7 35 0.00076 30.4 9.4 95 545-643 7-107 (153)
337 PF10345 Cohesin_load: Cohesin 74.3 1.7E+02 0.0037 33.7 33.2 81 290-370 152-252 (608)
338 PF07721 TPR_4: Tetratricopept 74.2 6 0.00013 23.2 3.3 21 585-605 5-25 (26)
339 cd00923 Cyt_c_Oxidase_Va Cytoc 74.0 27 0.00058 28.4 7.7 62 526-589 23-84 (103)
340 PF11207 DUF2989: Protein of u 73.8 24 0.00052 33.3 8.7 74 527-601 123-198 (203)
341 PF02284 COX5A: Cytochrome c o 72.9 29 0.00064 28.5 7.8 60 528-589 28-87 (108)
342 PF07721 TPR_4: Tetratricopept 72.7 4.6 0.0001 23.7 2.6 21 648-668 2-22 (26)
343 TIGR02561 HrpB1_HrpK type III 72.6 54 0.0012 29.3 10.1 97 521-641 21-121 (153)
344 PF06552 TOM20_plant: Plant sp 72.1 14 0.0003 34.1 6.6 26 629-654 96-121 (186)
345 KOG4234 TPR repeat-containing 71.8 30 0.00066 32.3 8.7 26 621-646 176-201 (271)
346 KOG0276 Vesicle coat complex C 71.2 37 0.0008 37.4 10.4 100 287-403 647-746 (794)
347 PF09477 Type_III_YscG: Bacter 70.8 61 0.0013 27.0 9.6 87 357-447 20-106 (116)
348 COG2976 Uncharacterized protei 70.2 98 0.0021 29.1 13.6 87 353-439 99-189 (207)
349 PRK15180 Vi polysaccharide bio 70.1 29 0.00064 36.8 9.2 120 523-646 302-424 (831)
350 KOG0376 Serine-threonine phosp 70.1 3.2 7E-05 44.0 2.5 77 592-668 15-93 (476)
351 KOG2063 Vacuolar assembly/sort 67.4 2E+02 0.0044 34.1 16.1 27 124-150 506-532 (877)
352 PF07720 TPR_3: Tetratricopept 67.1 13 0.00028 24.0 3.9 32 615-646 3-36 (36)
353 cd00923 Cyt_c_Oxidase_Va Cytoc 66.9 35 0.00076 27.8 7.0 45 326-370 25-69 (103)
354 KOG3807 Predicted membrane pro 66.7 48 0.001 33.5 9.5 115 516-650 281-399 (556)
355 KOG4507 Uncharacterized conser 66.3 17 0.00036 39.7 6.7 101 555-658 617-721 (886)
356 KOG2471 TPR repeat-containing 65.5 2E+02 0.0044 31.1 15.0 269 321-625 30-381 (696)
357 PF09670 Cas_Cas02710: CRISPR- 64.2 1.1E+02 0.0024 32.7 12.7 120 521-641 142-269 (379)
358 PF13762 MNE1: Mitochondrial s 63.9 97 0.0021 27.6 10.1 50 509-558 78-128 (145)
359 PF09477 Type_III_YscG: Bacter 63.9 86 0.0019 26.2 9.2 86 459-548 21-106 (116)
360 PRK13800 putative oxidoreducta 63.1 3.5E+02 0.0076 32.9 25.1 154 477-641 726-880 (897)
361 KOG1586 Protein required for f 62.8 1.5E+02 0.0033 28.7 15.7 99 559-657 128-241 (288)
362 PF13762 MNE1: Mitochondrial s 62.4 61 0.0013 28.9 8.5 79 92-170 40-128 (145)
363 PF11768 DUF3312: Protein of u 62.3 85 0.0018 34.6 11.2 57 483-539 412-473 (545)
364 PF04910 Tcf25: Transcriptiona 62.2 2.2E+02 0.0047 30.2 18.8 106 190-303 38-165 (360)
365 PHA02875 ankyrin repeat protei 61.7 2.4E+02 0.0051 30.5 16.1 196 231-443 19-229 (413)
366 PF13934 ELYS: Nuclear pore co 60.5 1.1E+02 0.0023 29.9 10.9 97 522-627 90-186 (226)
367 smart00028 TPR Tetratricopepti 60.4 15 0.00032 21.6 3.5 27 512-538 3-29 (34)
368 PF13174 TPR_6: Tetratricopept 59.9 11 0.00023 23.2 2.7 23 516-538 6-28 (33)
369 KOG3824 Huntingtin interacting 59.8 15 0.00034 36.5 4.8 61 592-652 127-189 (472)
370 PF14561 TPR_20: Tetratricopep 59.3 12 0.00027 30.2 3.5 35 634-668 9-43 (90)
371 PF02284 COX5A: Cytochrome c o 59.2 59 0.0013 26.9 7.1 47 606-652 38-84 (108)
372 KOG0403 Neoplastic transformat 58.8 2.6E+02 0.0055 30.0 18.5 71 382-456 513-586 (645)
373 PF11768 DUF3312: Protein of u 58.5 76 0.0017 34.9 10.1 23 127-149 413-435 (545)
374 COG1747 Uncharacterized N-term 58.2 2.8E+02 0.0061 30.3 21.3 162 478-646 65-238 (711)
375 PRK13342 recombination factor 57.8 2E+02 0.0044 31.1 13.7 48 411-458 229-279 (413)
376 smart00386 HAT HAT (Half-A-TPR 57.5 18 0.00038 22.0 3.4 29 627-655 1-29 (33)
377 COG4455 ImpE Protein of avirul 57.3 1.8E+02 0.004 27.9 12.0 123 513-648 4-140 (273)
378 PF10579 Rapsyn_N: Rapsyn N-te 56.7 27 0.00059 27.2 4.6 47 557-603 18-65 (80)
379 KOG0545 Aryl-hydrocarbon recep 56.6 44 0.00096 32.4 7.0 48 621-668 238-285 (329)
380 PRK10941 hypothetical protein; 55.8 72 0.0016 32.1 8.9 69 585-653 185-255 (269)
381 COG1747 Uncharacterized N-term 55.6 3.1E+02 0.0068 30.0 25.3 157 410-573 67-233 (711)
382 PF15469 Sec5: Exocyst complex 55.1 1.8E+02 0.004 27.1 12.0 88 550-653 91-179 (182)
383 COG4976 Predicted methyltransf 54.8 18 0.00039 34.6 4.1 57 590-646 4-62 (287)
384 PRK13800 putative oxidoreducta 53.8 4.9E+02 0.011 31.7 27.3 255 297-573 624-880 (897)
385 TIGR03504 FimV_Cterm FimV C-te 53.3 24 0.00053 24.0 3.6 24 415-438 5-28 (44)
386 COG5159 RPN6 26S proteasome re 53.2 1.9E+02 0.0041 28.9 10.8 125 415-539 9-154 (421)
387 KOG3824 Huntingtin interacting 53.1 39 0.00085 33.8 6.3 46 623-668 126-171 (472)
388 COG2909 MalT ATP-dependent tra 53.1 4.5E+02 0.0097 31.0 24.7 347 316-668 355-753 (894)
389 PF10579 Rapsyn_N: Rapsyn N-te 53.0 23 0.0005 27.6 3.8 44 625-668 18-64 (80)
390 KOG3364 Membrane protein invol 52.8 80 0.0017 27.7 7.3 35 618-652 76-110 (149)
391 KOG1308 Hsp70-interacting prot 52.1 6.2 0.00013 40.0 0.8 75 594-668 127-203 (377)
392 COG2912 Uncharacterized conser 51.7 27 0.00058 34.6 5.0 79 616-706 184-262 (269)
393 PF04190 DUF410: Protein of un 51.0 2.7E+02 0.0058 27.9 16.4 33 275-307 88-120 (260)
394 PF14863 Alkyl_sulf_dimr: Alky 50.5 60 0.0013 28.9 6.6 65 598-665 58-122 (141)
395 COG4941 Predicted RNA polymera 50.4 2.6E+02 0.0056 28.8 11.4 132 507-650 261-402 (415)
396 PF10366 Vps39_1: Vacuolar sor 50.3 93 0.002 26.2 7.5 27 310-336 41-67 (108)
397 TIGR03504 FimV_Cterm FimV C-te 49.8 36 0.00078 23.2 3.9 24 516-539 5-28 (44)
398 PF14853 Fis1_TPR_C: Fis1 C-te 49.7 53 0.0012 23.4 5.0 34 516-551 7-40 (53)
399 PF04190 DUF410: Protein of un 49.7 2.8E+02 0.0061 27.7 19.5 83 477-574 88-170 (260)
400 PF07163 Pex26: Pex26 protein; 49.3 1.7E+02 0.0036 29.3 9.8 88 517-607 90-184 (309)
401 PF11846 DUF3366: Domain of un 48.9 59 0.0013 30.8 7.0 34 611-644 142-175 (193)
402 PF10366 Vps39_1: Vacuolar sor 48.8 1.2E+02 0.0025 25.6 7.8 27 512-538 41-67 (108)
403 COG4455 ImpE Protein of avirul 48.3 48 0.001 31.6 5.8 65 585-649 5-71 (273)
404 KOG4642 Chaperone-dependent E3 48.2 30 0.00066 33.4 4.6 60 609-668 39-99 (284)
405 PRK13341 recombination factor 46.9 5.5E+02 0.012 30.3 16.8 111 139-251 171-302 (725)
406 KOG4642 Chaperone-dependent E3 46.7 1.9E+02 0.0042 28.2 9.5 81 489-571 20-104 (284)
407 PF09986 DUF2225: Uncharacteri 44.9 67 0.0014 31.1 6.6 55 614-668 119-186 (214)
408 PRK14962 DNA polymerase III su 44.7 4.7E+02 0.01 28.9 14.7 100 140-244 180-280 (472)
409 KOG0551 Hsp90 co-chaperone CNS 44.3 73 0.0016 32.5 6.7 87 582-668 82-174 (390)
410 KOG1550 Extracellular protein 43.6 5.4E+02 0.012 29.2 24.2 48 257-305 308-356 (552)
411 KOG2422 Uncharacterized conser 43.3 5.1E+02 0.011 28.9 16.5 50 554-606 351-403 (665)
412 PF11846 DUF3366: Domain of un 42.6 83 0.0018 29.8 6.9 52 556-607 119-170 (193)
413 PF13934 ELYS: Nuclear pore co 42.4 3.3E+02 0.0071 26.6 11.0 115 491-613 90-204 (226)
414 PRK13342 recombination factor 41.5 4.9E+02 0.011 28.2 16.4 109 139-249 154-272 (413)
415 KOG2300 Uncharacterized conser 41.3 5.1E+02 0.011 28.3 31.7 146 293-438 298-474 (629)
416 KOG2396 HAT (Half-A-TPR) repea 40.6 5.3E+02 0.011 28.3 30.9 103 541-646 455-564 (568)
417 PF14689 SPOB_a: Sensor_kinase 39.8 54 0.0012 24.3 4.0 23 515-537 28-50 (62)
418 cd08819 CARD_MDA5_2 Caspase ac 39.4 1.8E+02 0.004 23.3 6.9 39 289-328 48-86 (88)
419 PRK09169 hypothetical protein; 39.0 1.1E+03 0.024 31.6 47.3 469 123-602 123-687 (2316)
420 PF11663 Toxin_YhaV: Toxin wit 38.3 34 0.00073 29.8 3.0 34 520-555 105-138 (140)
421 KOG2581 26S proteasome regulat 38.0 5.2E+02 0.011 27.5 13.7 93 553-646 177-280 (493)
422 COG0790 FOG: TPR repeat, SEL1 38.0 4.4E+02 0.0096 26.6 18.3 145 495-644 93-268 (292)
423 TIGR02710 CRISPR-associated pr 37.6 2.8E+02 0.0061 29.4 10.2 26 519-544 139-164 (380)
424 PF13929 mRNA_stabil: mRNA sta 37.3 4.6E+02 0.0099 26.6 14.7 54 476-529 199-257 (292)
425 cd08819 CARD_MDA5_2 Caspase ac 36.7 2.1E+02 0.0045 23.0 6.8 38 491-529 48-85 (88)
426 KOG0292 Vesicle coat complex C 36.5 5.9E+02 0.013 30.1 12.7 176 422-641 606-781 (1202)
427 KOG3364 Membrane protein invol 36.2 1.1E+02 0.0024 26.9 5.7 87 614-715 33-124 (149)
428 COG3947 Response regulator con 35.9 90 0.002 31.3 5.8 49 620-668 286-334 (361)
429 PF07163 Pex26: Pex26 protein; 35.4 3.2E+02 0.0069 27.5 9.3 19 314-332 89-107 (309)
430 KOG0687 26S proteasome regulat 35.3 5.2E+02 0.011 26.6 11.7 92 480-573 105-209 (393)
431 PF12862 Apc5: Anaphase-promot 35.2 1.1E+02 0.0025 24.8 5.7 26 617-642 45-70 (94)
432 KOG0292 Vesicle coat complex C 34.8 58 0.0013 37.6 4.9 45 592-639 654-698 (1202)
433 PF14689 SPOB_a: Sensor_kinase 34.7 85 0.0018 23.2 4.3 30 544-573 22-51 (62)
434 PF07149 Pes-10: Pes-10; Inte 34.6 5.6E+02 0.012 26.8 16.8 131 85-218 91-271 (370)
435 KOG4077 Cytochrome c oxidase, 34.5 2.9E+02 0.0063 24.0 7.7 58 529-588 68-125 (149)
436 COG4785 NlpI Lipoprotein NlpI, 33.9 4.4E+02 0.0096 25.4 18.1 61 378-438 99-162 (297)
437 PF09670 Cas_Cas02710: CRISPR- 33.9 5.1E+02 0.011 27.7 11.8 61 207-271 134-198 (379)
438 KOG0890 Protein kinase of the 33.8 1.3E+03 0.029 30.9 36.0 156 251-415 1392-1552(2382)
439 PF15161 Neuropep_like: Neurop 33.2 17 0.00036 25.6 0.3 18 760-778 11-28 (65)
440 PRK06645 DNA polymerase III su 32.9 2.9E+02 0.0064 30.8 10.0 87 151-240 203-290 (507)
441 PF14561 TPR_20: Tetratricopep 32.6 2.7E+02 0.0058 22.5 10.3 50 612-661 21-72 (90)
442 PF08225 Antimicrobial19: Pseu 32.2 27 0.00059 19.0 0.9 12 766-777 10-21 (23)
443 COG3947 Response regulator con 32.1 5.6E+02 0.012 26.0 17.3 56 312-368 283-338 (361)
444 PF15015 NYD-SP12_N: Spermatog 31.4 93 0.002 32.8 5.3 48 621-668 236-283 (569)
445 cd00280 TRFH Telomeric Repeat 31.3 1.8E+02 0.004 27.0 6.6 38 618-656 116-153 (200)
446 PHA02537 M terminase endonucle 30.3 5.3E+02 0.011 25.2 11.5 23 520-542 93-115 (230)
447 PRK10564 maltose regulon perip 30.2 95 0.0021 31.4 5.1 41 512-552 259-299 (303)
448 PF06957 COPI_C: Coatomer (COP 30.2 1E+02 0.0022 33.2 5.6 43 604-646 289-333 (422)
449 PF11848 DUF3368: Domain of un 30.1 1.2E+02 0.0027 21.0 4.3 33 133-165 13-45 (48)
450 PRK10564 maltose regulon perip 29.8 86 0.0019 31.7 4.7 38 311-348 260-297 (303)
451 KOG4507 Uncharacterized conser 29.8 1.2E+02 0.0026 33.5 6.0 65 118-184 206-276 (886)
452 COG0735 Fur Fe2+/Zn2+ uptake r 29.8 2.2E+02 0.0048 25.4 7.1 47 310-356 22-68 (145)
453 PF08424 NRDE-2: NRDE-2, neces 29.8 6.5E+02 0.014 26.1 14.1 33 548-580 157-189 (321)
454 PRK15180 Vi polysaccharide bio 29.8 3.8E+02 0.0082 29.0 9.4 129 557-687 301-440 (831)
455 PF00244 14-3-3: 14-3-3 protei 29.6 5E+02 0.011 25.6 10.1 151 516-668 7-190 (236)
456 PF11848 DUF3368: Domain of un 29.1 2E+02 0.0043 19.9 5.2 32 521-552 13-44 (48)
457 PHA02875 ankyrin repeat protei 28.9 7.5E+02 0.016 26.5 16.2 78 319-404 10-91 (413)
458 KOG4077 Cytochrome c oxidase, 28.5 3E+02 0.0066 23.9 6.9 46 326-371 67-112 (149)
459 PF08311 Mad3_BUB1_I: Mad3/BUB 27.8 4E+02 0.0088 23.1 8.2 74 429-504 50-124 (126)
460 PF12862 Apc5: Anaphase-promot 27.8 1.1E+02 0.0023 24.9 4.4 45 624-668 9-62 (94)
461 PRK11639 zinc uptake transcrip 27.8 2.1E+02 0.0045 26.4 6.7 53 307-359 24-76 (169)
462 KOG0889 Histone acetyltransfer 27.8 1.9E+03 0.042 31.0 25.6 412 192-655 2397-2854(3550)
463 PF11663 Toxin_YhaV: Toxin wit 27.7 73 0.0016 27.8 3.3 33 319-353 106-138 (140)
464 KOG4279 Serine/threonine prote 27.6 1.8E+02 0.0039 33.2 7.0 27 512-538 203-229 (1226)
465 KOG2758 Translation initiation 27.2 7E+02 0.015 25.6 14.0 162 467-641 23-195 (432)
466 KOG2659 LisH motif-containing 26.2 4E+02 0.0087 25.8 8.2 91 513-606 29-128 (228)
467 cd08326 CARD_CASP9 Caspase act 25.9 2.8E+02 0.006 22.1 6.1 40 490-529 41-80 (84)
468 COG1466 HolA DNA polymerase II 24.9 3.6E+02 0.0079 28.2 8.8 89 148-240 153-241 (334)
469 COG4976 Predicted methyltransf 24.3 82 0.0018 30.4 3.3 46 623-668 5-50 (287)
470 cd08326 CARD_CASP9 Caspase act 24.2 2E+02 0.0044 22.9 5.1 41 287-327 40-80 (84)
471 TIGR02710 CRISPR-associated pr 24.2 8.9E+02 0.019 25.8 11.8 48 488-535 139-196 (380)
472 PF11525 CopK: Copper resistan 23.4 28 0.00061 25.9 0.1 21 781-801 8-28 (73)
473 COG5191 Uncharacterized conser 23.2 1.4E+02 0.003 30.3 4.7 73 580-652 106-181 (435)
474 PRK11639 zinc uptake transcrip 22.6 2.7E+02 0.0059 25.7 6.5 61 536-598 17-77 (169)
475 PF14669 Asp_Glu_race_2: Putat 22.5 6.6E+02 0.014 23.7 14.3 56 449-504 137-206 (233)
476 PF14669 Asp_Glu_race_2: Putat 22.4 6.7E+02 0.014 23.7 15.2 95 299-403 98-206 (233)
477 TIGR01503 MthylAspMut_E methyl 22.0 2.3E+02 0.0049 30.7 6.3 154 424-587 29-217 (480)
478 PRK13341 recombination factor 21.8 1.4E+03 0.029 27.1 15.2 38 421-458 270-307 (725)
479 COG0735 Fur Fe2+/Zn2+ uptake r 21.7 3.7E+02 0.008 24.0 6.9 62 534-598 10-72 (145)
480 COG5187 RPN7 26S proteasome re 21.6 7.5E+02 0.016 25.0 9.2 65 311-375 118-187 (412)
481 PF11817 Foie-gras_1: Foie gra 21.5 2.9E+02 0.0063 27.4 6.9 17 555-571 188-204 (247)
482 PF14427 Pput2613-deam: Pput_2 21.2 2.8E+02 0.006 23.2 5.2 58 731-788 44-101 (118)
483 smart00544 MA3 Domain in DAP-5 21.1 4.8E+02 0.01 21.8 7.4 84 312-395 6-89 (113)
484 PRK08691 DNA polymerase III su 20.9 6.1E+02 0.013 29.6 9.8 84 151-239 194-277 (709)
485 PF10516 SHNi-TPR: SHNi-TPR; 20.6 1.9E+02 0.0042 18.9 3.5 28 615-642 3-30 (38)
486 PF07575 Nucleopor_Nup85: Nup8 20.2 9.4E+02 0.02 27.4 11.5 242 294-554 284-539 (566)
487 KOG2422 Uncharacterized conser 20.0 1.3E+03 0.028 26.1 14.8 99 197-303 289-404 (665)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7e-143 Score=1265.32 Aligned_cols=782 Identities=34% Similarity=0.606 Sum_probs=758.9
Q ss_pred cchhhhhhhHHHHHhhchHHhhhhhccCCCCCCCCcccccCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCc
Q 039715 12 CKQLTHQSKINAWLRGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDL 91 (805)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 91 (805)
.....++.++.++.+.+.+..|...+...... ...|+..+|..++++|.+.+.++.|.++|..+.+.++.+++
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 121 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQEL-------RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGV 121 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-------CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCc
Confidence 34455677888888888888887776322211 12467889999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccC
Q 039715 92 FATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMG 171 (805)
Q Consensus 92 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 171 (805)
.++|+|+++|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|++.+
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh----------------ccccHHHHHHHHHHHHH
Q 039715 172 WAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL----------------FNDCFEEALNFFSQMRA 235 (805)
Q Consensus 172 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~----------------~~g~~~~A~~~~~~m~~ 235 (805)
++..+.++|..+.+.|+.||+.++|+||++|+++|++++|.++|++| ++|++++|+++|.+|..
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 78999999999999999
Q ss_pred CCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHH
Q 039715 236 VGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMI 315 (805)
Q Consensus 236 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 315 (805)
.|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+||.+|+++|++++|.++|++|.++|+++||+||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChH
Q 039715 316 ARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRME 395 (805)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 395 (805)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++++|+++|+++|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCC
Q 039715 396 NSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANY 475 (805)
Q Consensus 396 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 475 (805)
+|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|.++.+.++|..+.+.|+
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999986 6999999999999999999999999999999999999
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039715 476 DMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC 555 (805)
Q Consensus 476 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 555 (805)
.++..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|++||.+||+.++.+|
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
++.|++++|.++|+.|.+++|+.|+..+|++|+++|+|+|+++||.+++++||++||..+|++|+++|+.||+.+.|+.+
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCChHHHhh-----------cCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHH
Q 039715 636 AQHILDFEPEDEATHVLLSNIYAMARSWEKAAS-----------KEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEW 704 (805)
Q Consensus 636 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-----------~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 704 (805)
++++++++|+++..|+.|+|+|+..|+|++|.+ |.||+|||++++++|.|.+||.+||+.++||.+|++
T Consensus 680 a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~ 759 (857)
T PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759 (857)
T ss_pred HHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999998 889999999999999999999999999999999999
Q ss_pred HHHHHHHcCcccCCCccccccchhhhhhhhhhccHHHHHHHhhcCCCCCCCEEEEeeeeccCcchhhHHHHhhhcCceEE
Q 039715 705 LNMKSRKAGYIPDLSAVLRDVREDEKERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREII 784 (805)
Q Consensus 705 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~~~~~c~~~h~~~k~~s~~~~~~~~ 784 (805)
+..+|++.||+||+..++ ++++++|+..|++||||||+|||||+||+|+||||+||||||+|||+++||||++++||||
T Consensus 760 l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~ 838 (857)
T PLN03077 760 FYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREIS 838 (857)
T ss_pred HHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEE
Confidence 999999999999999887 5588999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccccccccCCCC
Q 039715 785 IRDVHRFHHFQDGCCSCGD 803 (805)
Q Consensus 785 ~~d~~~~h~~~~g~csc~~ 803 (805)
|||.+|||||+||+|||||
T Consensus 839 ~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 839 VRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EecCCcceeCCCCcccCCC
Confidence 9999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-120 Score=1049.07 Aligned_cols=602 Identities=37% Similarity=0.638 Sum_probs=587.5
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHC-CCCCChhhHHHHHHHhhCCCCHHHHHHHHHH
Q 039715 189 DSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAV-GFKPNNFTFAFVLKACLGLDTIRVAKSAHGC 267 (805)
Q Consensus 189 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 267 (805)
..+...|+.+|..|.+.|++++|.++| +.|... +..||..||+.++.+|++.++++.+.++|..
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f---------------~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~ 148 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELF---------------EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWH 148 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHH---------------HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 355668888999999888777555555 467765 4789999999999999999999999999999
Q ss_pred HHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHH
Q 039715 268 ALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFV 347 (805)
Q Consensus 268 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 347 (805)
+.+.|+.||..+++.|+++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHH
Q 039715 348 SVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGK 427 (805)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 427 (805)
.++.+|++.|+.+.+.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC
Q 039715 428 AMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND 507 (805)
Q Consensus 428 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 507 (805)
|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.+
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHH
Q 039715 508 WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSM 587 (805)
Q Consensus 508 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 587 (805)
+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|++|
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 588 VSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
+++|+++|++++|.+++++|++.|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-----------cCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhh
Q 039715 668 S-----------KEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEKERYLWV 736 (805)
Q Consensus 668 ~-----------~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 736 (805)
+ |.||+|||++++++|.|.+||..||+..+||.+|.++..+|++.||+||+.++++++++++|+..+++
T Consensus 549 ~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~ 628 (697)
T PLN03081 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRY 628 (697)
T ss_pred HHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHh
Confidence 8 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhhcCCCCCCCEEEEeeeeccCcchhhHHHHhhhcCceEEEecCCccccccccccCCCCCC
Q 039715 737 HSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDVHRFHHFQDGCCSCGDFW 805 (805)
Q Consensus 737 hse~la~~~~~~~~~~~~~~~~~~~~~~c~~~h~~~k~~s~~~~~~~~~~d~~~~h~~~~g~csc~~~w 805 (805)
||||||+|||||++|+|+||||+||||||+|||+|+||||++++|||||||.+|||||+||+|||+|||
T Consensus 629 hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 629 HSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.5e-79 Score=721.78 Aligned_cols=678 Identities=24% Similarity=0.366 Sum_probs=587.1
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHhccCCC----CCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHH
Q 039715 87 NCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE----RNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTA 162 (805)
Q Consensus 87 ~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 162 (805)
..++..++|.++..|++.|++++|..+|+.|++ |+..+|+.++.++.+.+.++.|..++..+.+.|..|+...+++
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 356777888888888888888888888888865 6777888888888888888888888888888888888888888
Q ss_pred HHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCCh
Q 039715 163 FLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNN 242 (805)
Q Consensus 163 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 242 (805)
++..|++.|+++.|.++|+.|. +||+.+||.||.+|++.|++++ |+++|++|...|+.||.
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~---------------A~~~f~~M~~~g~~Pd~ 187 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDE---------------ALCLYHRMLWAGVRPDV 187 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHH---------------HHHHHHHHHHcCCCCCh
Confidence 8888888888888888888885 4788888888888888887765 55555588899999999
Q ss_pred hhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 039715 243 FTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTD 322 (805)
Q Consensus 243 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 322 (805)
+||+.++++|+..+++..++++|..+++.|+.||..++|+||.+|+++|++++|.++|++|+++|+++||+||.+|++.|
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENG 267 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHh
Q 039715 323 LSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFA 402 (805)
Q Consensus 323 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 402 (805)
++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|+
T Consensus 268 ~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHH
Q 039715 403 ESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVA 482 (805)
Q Consensus 403 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 482 (805)
+|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++
T Consensus 348 ~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred hCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 039715 483 NALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLE 562 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 562 (805)
|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.+ +++||..||+.++.+|++.|.++
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHH
Confidence 99999999999999999999999999999999999999999999999999999986 59999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-
Q 039715 563 QGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILD- 641 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 641 (805)
++.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|++|+.+|.++|+.++|+++|+++.+
T Consensus 507 ~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 507 CGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999966 99999999999999999999999999999999 79999999999999999999999999999987
Q ss_pred -cCCCCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEEeeCCCCCccHH------HHHH---HHHHHHHHHHH
Q 039715 642 -FEPEDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYFRAGDTSHADMN------IIRG---MLEWLNMKSRK 711 (805)
Q Consensus 642 -~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~------~i~~---~l~~l~~~~~~ 711 (805)
+.| |..+|..+...|.+.|++++|.+-.. .........|+.. .++. .+++..+.+++
T Consensus 584 g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~------------~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 584 GVNP-DEVTFISLLCACSRSGMVTQGLEYFH------------SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred CCCC-CcccHHHHHHHHhhcChHHHHHHHHH------------HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456 66789999999999999999988000 0000011223322 1121 24566666777
Q ss_pred cCcccCCCccccccchhhhhhhhhhccHHHH-HHHhhcCCCCCCCEEEEeeeeccCcchhhHHHHhhhcCceE-------
Q 039715 712 AGYIPDLSAVLRDVREDEKERYLWVHSEKLA-LAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREI------- 783 (805)
Q Consensus 712 ~g~~~~~~~~~~~~~~~~~~~~~~~hse~la-~~~~~~~~~~~~~~~~~~~~~~c~~~h~~~k~~s~~~~~~~------- 783 (805)
.+..||...|..-+..+....-+- --|+.| ..+.+.+...+.-+.+.+-....|+..++.+....+..+.+
T Consensus 651 m~~~pd~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 651 MPITPDPAVWGALLNACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred CCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence 788898766544444332211110 012222 23555555555554444555678889999998887766633
Q ss_pred EEecCCccccccccccCC
Q 039715 784 IIRDVHRFHHFQDGCCSC 801 (805)
Q Consensus 784 ~~~d~~~~h~~~~g~csc 801 (805)
.|.-.+..|-|..|.-|-
T Consensus 730 ~ie~~~~~~~f~~~d~~h 747 (857)
T PLN03077 730 WVEVKGKVHAFLTDDESH 747 (857)
T ss_pred EEEECCEEEEEecCCCCC
Confidence 122346788887776543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-69 Score=622.90 Aligned_cols=532 Identities=16% Similarity=0.200 Sum_probs=483.6
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCC-CCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHH
Q 039715 53 EFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGN-CLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQG 131 (805)
Q Consensus 53 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 131 (805)
.++...|..++..|.+.|++++|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|+.||..+||.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45567789999999999999999999999999986 56778889999999999999999999999999999999999999
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHH
Q 039715 132 YTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFA 211 (805)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 211 (805)
|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++|+.|.+.|+.||..+||.||++|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988755
Q ss_pred HHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHH--hCCCCcHhHHHHHHHHHHc
Q 039715 212 RKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALK--TCYEMDLYVAVALLDLYTK 289 (805)
Q Consensus 212 ~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~ 289 (805)
.++| .+|...|+.||..||+.+|.+|++.|+++.|.++++.|.+ .|+.||..+|++||.+|++
T Consensus 527 l~lf---------------~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 527 FGAY---------------GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HHHH---------------HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 5555 5889999999999999999999999999999999999987 6789999999999999999
Q ss_pred CCChHHHHHHHhhCCCC----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHH
Q 039715 290 SGEISNARRIFEEMPKK----DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQI 365 (805)
Q Consensus 290 ~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 365 (805)
+|++++|.++|++|.+. +..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999764 55889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 039715 366 HSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESP----KRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVP 441 (805)
Q Consensus 366 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 441 (805)
++.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999985 589999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHH----hcCCHHHHHHHhhhcCCCCHhHHHHHH
Q 039715 442 ATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYA----KCGSITDARLVFDMMNDWNEVSWNAMI 517 (805)
Q Consensus 442 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~~~~~~~li 517 (805)
||..||++++.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++. ++++..++...|+.+...+...|
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w---- 827 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW---- 827 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch----
Confidence 9999999999999999999999999999999999999999999998743 33333333333433333333334
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCH
Q 039715 518 SGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHL 597 (805)
Q Consensus 518 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 597 (805)
.++|+.+|++|++.|+.||..||+.++.++...+..+.+..+++.|... +..|+..+|++||+.+++. .
T Consensus 828 --------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~ 896 (1060)
T PLN03218 828 --------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--D 896 (1060)
T ss_pred --------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--h
Confidence 4569999999999999999999999997777888888888888777644 6677889999999988542 4
Q ss_pred HHHHHHHHcC---CCCCCHH
Q 039715 598 DKAAKLIEGI---PFQPSVM 614 (805)
Q Consensus 598 ~eA~~~~~~~---~~~p~~~ 614 (805)
++|..++++| .+.|+..
T Consensus 897 ~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCcc
Confidence 7899999988 3556653
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.6e-66 Score=594.21 Aligned_cols=470 Identities=24% Similarity=0.382 Sum_probs=428.5
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHhccCC-----CCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHH
Q 039715 88 CLDLFATNVLLNVYVKLNRLPDATKLFDEMP-----ERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTA 162 (805)
Q Consensus 88 ~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 162 (805)
..+...++++|..|.+.|++++|.++|+.|. .||..+|++++.++++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3455677888888888888888888887774 25667788888888888888888888888888888888888888
Q ss_pred HHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCCh
Q 039715 163 FLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNN 242 (805)
Q Consensus 163 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 242 (805)
++++|++.|+++.|.++|+.|. .||..+||+||.+|++.|+++ +|+++|++|.+.|+.||.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~---------------~A~~lf~~M~~~g~~p~~ 224 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYR---------------EAFALFREMWEDGSDAEP 224 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHH---------------HHHHHHHHHHHhCCCCCh
Confidence 8888888888888888887774 477778888888888777666 555556688999999999
Q ss_pred hhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 039715 243 FTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTD 322 (805)
Q Consensus 243 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 322 (805)
.||+.++.+|+..|..+.++++|..+.+.|+.+|..++++||++|+++|++++|.++|++|+++|+++||+||.+|++.|
T Consensus 225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g 304 (697)
T PLN03081 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304 (697)
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHh
Q 039715 323 LSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFA 402 (805)
Q Consensus 323 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 402 (805)
++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.+|..++++|+++|+++|++++|.++|+
T Consensus 305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHH-cCCCCcHhH
Q 039715 403 ESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVK-ANYDMDVVV 481 (805)
Q Consensus 403 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 481 (805)
+|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+
T Consensus 385 ~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred hCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 699999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcC-CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCC
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMN-DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGG 559 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 559 (805)
|++++++|++.|++++|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCC
Confidence 9999999999999999999999997 67999999999999999999999999999976 5675 568999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCC
Q 039715 560 LLEQGEAYFKSMVANYGIEP 579 (805)
Q Consensus 560 ~~~~a~~~~~~m~~~~~~~p 579 (805)
++++|.++++.|.++ |+.+
T Consensus 543 ~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 543 RQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred CHHHHHHHHHHHHHc-CCcc
Confidence 999999999999876 7754
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.6e-63 Score=574.18 Aligned_cols=522 Identities=14% Similarity=0.133 Sum_probs=436.3
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcc-----hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHH
Q 039715 87 NCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTI-----SFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFT 161 (805)
Q Consensus 87 ~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 161 (805)
..++...|..++..|+++|++++|+++|++|++++.. .++.++.+|.+.|..++|+.+|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 3467788999999999999999999999999876654 455677789999999999999999975 9999999
Q ss_pred HHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCC
Q 039715 162 AFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPN 241 (805)
Q Consensus 162 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 241 (805)
.+|++|++.|+++.|.++|+.|.+.|+.||..+||.||.+|+++|++++|.++|+ +|.+.|+.||
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~---------------eM~~~Gv~Pd 506 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH---------------EMVNAGVEAN 506 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHH---------------HHHHcCCCCC
Confidence 9999999999999999999999999999999999999999999998886666655 7889999999
Q ss_pred hhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCC------CCCcccHHHHH
Q 039715 242 NFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMP------KKDVIPWSFMI 315 (805)
Q Consensus 242 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~------~~~~~~~~~li 315 (805)
..||+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.++|++||
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI 586 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999884 36778888999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChH
Q 039715 316 ARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRME 395 (805)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 395 (805)
.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|..+|+.|.+.|+.||..+|++|+++|++.|+++
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999998888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHH
Q 039715 396 NSVELFAESPK----RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTV 471 (805)
Q Consensus 396 ~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 471 (805)
+|.++|+.|.+ +|..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888877753 57777888888888888888888888888777778888888888888888888888888888877
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 039715 472 KANYDMDVVVANALIDMYAKCGSITDARLVFDMMN----DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT 547 (805)
Q Consensus 472 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 547 (805)
+.|+.||..+|++|+.+|++.|++++|.++|++|. .+|..+|++++..|. +++++|.++.+.+..- .+
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f--~~---- 818 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF--DS---- 818 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh--hc----
Confidence 77777777777777777777777777777777775 457777777775443 2455555554444321 11
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI---PFQPSVMIWRALLGACI 624 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~p~~~~~~~l~~~~~ 624 (805)
.......+..++|..+|++|.+. |+.||..+|+.++..+.+.+..+.+..+++.| +..|+..+|++|+.++.
T Consensus 819 ----g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 819 ----GRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred ----cccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 00111123346799999999977 99999999999999999999999999999988 45677899999999984
Q ss_pred HcCCHHHHHHHHHHHhcc
Q 039715 625 IHNNVEIGRLSAQHILDF 642 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~ 642 (805)
.. .++|..+++.+.+.
T Consensus 894 ~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 894 EY--DPRAFSLLEEAASL 909 (1060)
T ss_pred cC--hHHHHHHHHHHHHc
Confidence 32 46899999999873
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.3e-34 Score=343.47 Aligned_cols=634 Identities=12% Similarity=0.037 Sum_probs=290.5
Q ss_pred hhhhhhhHHHHHhhchHHhhhhhccCCCCCCCCcccccCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcch
Q 039715 14 QLTHQSKINAWLRGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFA 93 (805)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 93 (805)
...+.-.+..+...+....|...+...-. ..+.++..+..+...+...|+++.|...+..+.+..+.. ...
T Consensus 193 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 263 (899)
T TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIA--------LRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNS-PLA 263 (899)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chH
Confidence 34444455566666666666655411000 001223445555555556666666666666655544321 222
Q ss_pred HHHHHHHHHhCCCchHHHHHhccCCC--CC-cchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhcc
Q 039715 94 TNVLLNVYVKLNRLPDATKLFDEMPE--RN-TISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSM 170 (805)
Q Consensus 94 ~~~ll~~~~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 170 (805)
.......+...|++++|...|+++.+ |+ ...+..+...+...|++++|...|+++.+.. +.+...+..+...+.+.
T Consensus 264 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 342 (899)
T TIGR02917 264 HYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRL 342 (899)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC
Confidence 22222333445555555555554432 11 1122233334444555555555555544421 11222333444444445
Q ss_pred CCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh-------------------ccccHHHHHHHHH
Q 039715 171 GWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL-------------------FNDCFEEALNFFS 231 (805)
Q Consensus 171 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-------------------~~g~~~~A~~~~~ 231 (805)
|+++.|...+..+.+.. +.+...++.+...|.+.|++++|.+.|+++ ..|++++|+..|.
T Consensus 343 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 343 GRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 55555555554444433 223344444445555555555555554443 3344444444444
Q ss_pred HHHHCCC---------------------------------CCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHh
Q 039715 232 QMRAVGF---------------------------------KPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLY 278 (805)
Q Consensus 232 ~m~~~g~---------------------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 278 (805)
++..... .++..++..+...+...|+++.|.+.+..+++.. +.+..
T Consensus 422 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 500 (899)
T TIGR02917 422 TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFP 500 (899)
T ss_pred HHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHH
Confidence 4444322 2233344444444444455555555554444432 22233
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 039715 279 VAVALLDLYTKSGEISNARRIFEEMPK---KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACAT 355 (805)
Q Consensus 279 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 355 (805)
.+..+...+...|++++|.+.|+++.. .+..++..+...+.+.|+.++|...|+++...+ +.+...+..+...+..
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 579 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLG 579 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHH
Confidence 344444444445555555555444432 123334444444545555555555555444332 1223334444444445
Q ss_pred cCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHH
Q 039715 356 MEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMF 432 (805)
Q Consensus 356 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 432 (805)
.|++++|..+++.+.+.. +.+..++..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|...|
T Consensus 580 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 580 KGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555444432 33344444555555555555555555544321 13334444455555555555555555
Q ss_pred HHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCH
Q 039715 433 SKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN--DWNE 510 (805)
Q Consensus 433 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~ 510 (805)
+++.+.. +.+..++..+...+...|++++|.+++..+.+.. +.+...+..+...|.+.|++++|.+.|+++. .++.
T Consensus 659 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 659 KRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Confidence 5544321 1223344444444555555555555555444443 2334444444555555555555555555443 2223
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSL 590 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 590 (805)
.++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|+.++|.++|+++.+. -+++...+..++.+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~ 813 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWL 813 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 344444555555555555555555554431 223334444444455555555555555555432 12234445555555
Q ss_pred HHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 591 LGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
+.+.|+ ++|+++++++ ...| +...|..++..+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.
T Consensus 814 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 814 YLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred HHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 555555 4455555433 1122 23344455555555555555555555555555555555555555555555555554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-33 Score=341.04 Aligned_cols=635 Identities=12% Similarity=0.038 Sum_probs=413.2
Q ss_pred ccchhhhhhhHHHHHhhchHHhhhhhccCCCCCCCCcccccCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCC
Q 039715 11 SCKQLTHQSKINAWLRGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLD 90 (805)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 90 (805)
|.....+......+...+.+..|.......-. ..+.+...+..+...+...|+++.|...+..+.+..+ .+
T Consensus 156 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~ 226 (899)
T TIGR02917 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLT--------ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NN 226 (899)
T ss_pred CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CC
Confidence 33445566677778888888888776511100 0123456677777888899999999999999988765 46
Q ss_pred cchHHHHHHHHHhCCCchHHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHH
Q 039715 91 LFATNVLLNVYVKLNRLPDATKLFDEMPE--R-NTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPF-AFTAFLKV 166 (805)
Q Consensus 91 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~ 166 (805)
..++..++..+...|++++|...|+.+.+ | +...+......+...|++++|+..|+++.+.+ |+.. .+..+...
T Consensus 227 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~ 304 (899)
T TIGR02917 227 PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGAS 304 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHH
Confidence 67888899999999999999999998754 2 23344444555678899999999999998843 5433 44445566
Q ss_pred HhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh-------------------ccccHHHHH
Q 039715 167 LVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL-------------------FNDCFEEAL 227 (805)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-------------------~~g~~~~A~ 227 (805)
+...|+++.|...+..+.+.. +.+...+..+...+.+.|++++|...++.+ ..|++++|+
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 778999999999999998876 345677888999999999999999999876 679999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC--
Q 039715 228 NFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK-- 305 (805)
Q Consensus 228 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 305 (805)
+.|+++.+... .+...+..+...+...|+.+.|.+.+..+.+.... .......++..|.+.|++++|..+++.+..
T Consensus 384 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 461 (899)
T TIGR02917 384 EYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461 (899)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999987542 24456667777778889999999888888776532 234455566777777777777777777653
Q ss_pred -CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHH
Q 039715 306 -KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNAL 384 (805)
Q Consensus 306 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 384 (805)
.+...|+.+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.+ +.+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 244567777777777777777777777776542 2234455556666667777777777777776654 3455566666
Q ss_pred HHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCch
Q 039715 385 MDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALE 461 (805)
Q Consensus 385 i~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 461 (805)
...|.+.|+.++|...|+++.. .+...+..++..|.+.|++++|+.+++++.... +.+..++..+...+...|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 6666667777777666665432 234455566666666666666666666665432 334445566666666666666
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
+|...+..+.+.. +.+...+..+...|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|+.+++.+.+
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665543 33445555666666666666666666665542 2445555555555555666666665555555
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHH
Q 039715 539 RGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF-QPSVMIW 616 (805)
Q Consensus 539 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~ 616 (805)
.+ .++...+..+...+...|++++|...|+.+.. ..|+...+..++.++.+.|++++|.+.++++ .. ..+...+
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 42 22334444455555555555555555555542 2344444445555555555555555555443 11 1234445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 617 RALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 617 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..+...|...|+.++|+..++++++..|+++..+..++.+|...|+ ++|..
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence 5555555555555555555555555555555555555555555555 44444
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=1.5e-33 Score=238.57 Aligned_cols=106 Identities=57% Similarity=0.912 Sum_probs=97.2
Q ss_pred CCceEEECCeEEEEeeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hhhhhhccHHHHH
Q 039715 672 GLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAGYIPDLSAVLRDVREDEK--------ERYLWVHSEKLAL 743 (805)
Q Consensus 672 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 743 (805)
|+||+++ |.|.+||.+||+. .+..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999987 9999999999998 455566788999999999888887766 6689999999999
Q ss_pred HHhhcCCCCCCCEEEEeee-eccCcchhhHHHHhhhcCceEEEecCCcccccc
Q 039715 744 AFALFKMPPSSPIRIIKNL-RICVDCHTAIKIISKIVQREIIIRDVHRFHHFQ 795 (805)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~-~~c~~~h~~~k~~s~~~~~~~~~~d~~~~h~~~ 795 (805)
||||+++ ||+||+ |||+|||+|+|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.5e-25 Score=270.11 Aligned_cols=591 Identities=10% Similarity=0.016 Sum_probs=443.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC--CCcch-H----------
Q 039715 59 YATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE--RNTIS-F---------- 125 (805)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~-~---------- 125 (805)
+...++.+...++.+.|.+.+.++....+. ++.++..+...+.+.|+.++|.+.+++..+ |+... +
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 556667788899999999999999887664 677788889999999999999999998865 43322 1
Q ss_pred ------HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHH
Q 039715 126 ------VTTIQGYTVSSQFVEAVGLFSTLHREGHELNPF-AFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTAL 198 (805)
Q Consensus 126 ------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 198 (805)
..+...+...|++++|+..|+++.+.. +|+.. ............++.++|...++.+.+.. +.+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 223446788999999999999998742 23322 11111222334689999999999999886 4466788899
Q ss_pred HHHHHhcCCHHHHHHHHhhhcc---ccHHHHHHHHHHHHHCC------------------------------------CC
Q 039715 199 IDAFSVCGCVEFARKVFDGLFN---DCFEEALNFFSQMRAVG------------------------------------FK 239 (805)
Q Consensus 199 i~~y~~~g~~~~A~~~~~~~~~---g~~~~A~~~~~~m~~~g------------------------------------~~ 239 (805)
...+...|+.++|...|+++.. +....+...++.+...+ ..
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 9999999999999999998721 11111211112111111 11
Q ss_pred CChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCc-----ccHHHH
Q 039715 240 PNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDV-----IPWSFM 314 (805)
Q Consensus 240 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-----~~~~~l 314 (805)
|+... ......+...|+++.|...++..++.. +.+..++..|...|.+.|++++|+..|++..+.+. ..|..+
T Consensus 268 p~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 268 PAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred cchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 11111 122345567899999999999998875 34677888899999999999999999988764322 123222
Q ss_pred ------------HHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHH
Q 039715 315 ------------IARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSN 382 (805)
Q Consensus 315 ------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 382 (805)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.++.+++.. +.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 345678899999999999998863 2345566677888899999999999999999875 34456677
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCC------------hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC-hhhHHH
Q 039715 383 ALMDVYAKCGRMENSVELFAESPKRN------------HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPAT-EVTYSS 449 (805)
Q Consensus 383 ~Li~~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 449 (805)
.+...|. .++.++|..+++.++... ...+..+...+...|++++|++.|++.++. .|+ ...+..
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~ 500 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYR 500 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 7777775 467899999988776431 123556677888999999999999999875 454 346677
Q ss_pred HHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC----CH---------hHHHHH
Q 039715 450 VLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW----NE---------VSWNAM 516 (805)
Q Consensus 450 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l 516 (805)
+...+.+.|++++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 8888999999999999999998765 345555666666778899999999999988632 11 123345
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG 595 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 595 (805)
...+...|+.++|+++++. .+++...+..+...+...|+.++|+..|+.+.+ ..| +...+..++.+|...|
T Consensus 580 a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCC
Confidence 6778899999999999872 234555677788889999999999999999985 356 5788899999999999
Q ss_pred CHHHHHHHHHcCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc------hHHHHHHHHHhcCChHHHh
Q 039715 596 HLDKAAKLIEGIP-FQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA------THVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 596 ~~~eA~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~ 667 (805)
++++|++.+++.+ ..| +...+..+..++...|++++|...++++++..|+++. .+..++.++...|++++|.
T Consensus 652 ~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 652 DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999774 344 4567888888999999999999999999998776543 5667799999999999999
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
.
T Consensus 732 ~ 732 (1157)
T PRK11447 732 E 732 (1157)
T ss_pred H
Confidence 8
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=6.9e-24 Score=257.57 Aligned_cols=560 Identities=12% Similarity=0.044 Sum_probs=414.7
Q ss_pred HHHHHHHhCCCchHHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchH------------
Q 039715 96 VLLNVYVKLNRLPDATKLFDEMPE--R-NTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAF------------ 160 (805)
Q Consensus 96 ~ll~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------------ 160 (805)
..+..+...++.+.|++.++++.. | |...+..++..+.+.|+.++|.+.+++..+. .|+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCC
Confidence 355677888999999999988753 3 5667888999999999999999999999984 4655433
Q ss_pred -----HHHHHHHhccCCccchhhHHHHHHHhCCCCchhh-HHHHHHHHHhcCCHHHHHHHHhhh----------------
Q 039715 161 -----TAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFV-GTALIDAFSVCGCVEFARKVFDGL---------------- 218 (805)
Q Consensus 161 -----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~~---------------- 218 (805)
..+...+...|++++|.+.++.+.+... ++... ...+.......|+.++|.+.|+++
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2233457789999999999999987653 33221 111122223458999999999888
Q ss_pred ---ccccHHHHHHHHHHHHHCCCCCCh--hh-----------------HHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCc
Q 039715 219 ---FNDCFEEALNFFSQMRAVGFKPNN--FT-----------------FAFVLKACLGLDTIRVAKSAHGCALKTCYEMD 276 (805)
Q Consensus 219 ---~~g~~~~A~~~~~~m~~~g~~p~~--~t-----------------~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 276 (805)
..|++++|+..|+++......... .. +...+..+-.......+...+....+....|+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 678899999999998764321100 01 11111112222223444455544443333333
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHH------
Q 039715 277 LYVAVALLDLYTKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQ-FTF------ 346 (805)
Q Consensus 277 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~------ 346 (805)
.. ...+...+...|++++|...|++..+. +...+..|...|.+.|++++|+..|++..+....... ..+
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 22 223456677899999999999987642 5567889999999999999999999999875432211 111
Q ss_pred ------HHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 039715 347 ------VSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIV 417 (805)
Q Consensus 347 ------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 417 (805)
......+.+.|++++|...++.+++.. +.+...+..|..+|...|++++|++.|++..+ .+...+..+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 122345678899999999999999876 45667788899999999999999999998664 34556777777
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCC--------CChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 039715 418 GYVQLGEVGKAMIMFSKMLEEQVP--------ATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMY 489 (805)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 489 (805)
.|. .++.++|+.+++.+...... .....+..+...+...|++++|.+.++.+++.. +.+..++..+...|
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 775 46789999998876432110 001234456677888999999999999999876 44677888899999
Q ss_pred HhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHc
Q 039715 490 AKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL---------TFVGVLSACSN 557 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~ 557 (805)
.+.|++++|...|+++.+ .+...+..+...+...|+.++|+..++++......++.. .+......+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999998753 256667667777788999999999998875433222221 23345667889
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
.|+.++|..+++. ..++...+..+.+.|.+.|++++|++.|+++ ...| +...+..++..+...|+.++|+..
T Consensus 586 ~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 586 SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998761 2345667788999999999999999999976 3345 567899999999999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 636 AQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 636 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++++++..|+++..+..++.++...|++++|.+
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999988
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.8e-21 Score=225.35 Aligned_cols=572 Identities=9% Similarity=-0.009 Sum_probs=345.2
Q ss_pred hHHHHHHH--hhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC--CCcchHHHHHHHHH
Q 039715 58 SYATSLQS--CIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE--RNTISFVTTIQGYT 133 (805)
Q Consensus 58 ~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~ 133 (805)
++..++.+ +...|++++|...+.++++..+.. ..++..|...|.+.|+.++|+..+++..+ |+-.-|..++..+
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i- 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI- 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh-
Confidence 34445554 345699999999999999998865 88899999999999999999999998865 3323333333333
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHH-----hccCCccchhhHHHHHHHhCCCCchhhHHHH-HHHHHhcC
Q 039715 134 VSSQFVEAVGLFSTLHREGHELNPF-AFTAFLKVL-----VSMGWAELCPCVFACVYKLGHDSNAFVGTAL-IDAFSVCG 206 (805)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~y~~~g 206 (805)
+++++|..+++++.. ..|+.. .+..+.... .+..+.+.+.+.++ .......|+..+.... ...|.+.|
T Consensus 122 --~~~~kA~~~ye~l~~--~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 122 --PVEVKSVTTVEELLA--QQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred --ccChhHHHHHHHHHH--hCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 889999999999998 456654 443333330 22333467777776 4444444455544544 88898888
Q ss_pred CHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 039715 207 CVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLG-LDTIRVAKSAHGCALKTCYEMDLYVAVALLD 285 (805)
Q Consensus 207 ~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 285 (805)
++++|...+. ++.+.++.. ..-...+-.++.. .++ +.+..++.. .+..+..++..+..
T Consensus 197 dw~~Ai~lL~---------------~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~ 255 (987)
T PRK09782 197 QWSQADTLYN---------------EARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYAT 255 (987)
T ss_pred CHHHHHHHHH---------------HHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHH
Confidence 7776666555 445443222 1112233333433 233 444444331 22345666666666
Q ss_pred HHHcCCChHHHHHHHhhCCCC-----Cccc------------------------------HHHHHHHHHhCCChhHHHHH
Q 039715 286 LYTKSGEISNARRIFEEMPKK-----DVIP------------------------------WSFMIARYAQTDLSIDAVEL 330 (805)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~~-----~~~~------------------------------~~~li~~~~~~g~~~~A~~~ 330 (805)
.|.+.|+.++|.+++.+++.- +..+ .-.++..+.++++++.+.++
T Consensus 256 ~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (987)
T PRK09782 256 ALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL 335 (987)
T ss_pred HHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 666666666666666665421 0000 11124445555555544433
Q ss_pred -----------------------------HHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHh-C-CCccHH
Q 039715 331 -----------------------------FCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRV-G-LLSDVF 379 (805)
Q Consensus 331 -----------------------------~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-~~~~~~ 379 (805)
++.|.+.. +-+....--+--...+.|+.++|.++++..... + -..+..
T Consensus 336 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 336 LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 33332220 002222222222234566677777777766552 1 112344
Q ss_pred HHHHHHHHHHhcCChH---HHHHH-------------------------HhcCCC---C--ChhhHHHHHHHHHHcCChH
Q 039715 380 VSNALMDVYAKCGRME---NSVEL-------------------------FAESPK---R--NHVTWNTMIVGYVQLGEVG 426 (805)
Q Consensus 380 ~~~~Li~~y~~~g~~~---~A~~~-------------------------f~~~~~---~--~~~~~~~li~~~~~~g~~~ 426 (805)
..+-|+..|.+.+.+. .+..+ +..... . +...|..+..++.. ++.+
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 5556777777766522 22222 111111 1 44556666666665 6777
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC
Q 039715 427 KAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN 506 (805)
Q Consensus 427 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 506 (805)
+|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+...+.+.|+.++|.+.|++..
T Consensus 494 eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 494 VALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777766666553 355444333444445777777777777776543 2333345566667777777777777777766
Q ss_pred CCCHhHHHHH---HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChH
Q 039715 507 DWNEVSWNAM---ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIE 582 (805)
Q Consensus 507 ~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 582 (805)
+.++..++.. ...+...|++++|+..|++..+ +.|+...+..+..++.+.|+.++|...+++.. .+.| +..
T Consensus 570 ~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~ 644 (987)
T PRK09782 570 QRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSN 644 (987)
T ss_pred hcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHH
Confidence 4433322222 2233344777888887777777 45666677777777777788888887777776 3455 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
.+..+...+...|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..+....+++..+.
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 6777777777777888877777755 3344 4557777777777778888888888888888887777777777777777
Q ss_pred CChHHHhh
Q 039715 661 RSWEKAAS 668 (805)
Q Consensus 661 g~~~~a~~ 668 (805)
.+++.|.+
T Consensus 725 ~~~~~a~~ 732 (987)
T PRK09782 725 FNFRRLHE 732 (987)
T ss_pred HHHHHHHH
Confidence 77777776
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.2e-20 Score=218.51 Aligned_cols=531 Identities=10% Similarity=0.005 Sum_probs=380.3
Q ss_pred HhCCCchHHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhh
Q 039715 102 VKLNRLPDATKLFDEMPE--R-NTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPC 178 (805)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 178 (805)
...|++++|...|+...+ | +...+..|...|...|++++|+..+++..+ ..|+...|..++..+ ++...|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~--ldP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK--RHPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHHHHh---ccChhHHH
Confidence 345999999999998764 4 455789999999999999999999999998 467766666655333 88999999
Q ss_pred HHHHHHHhCCCCchhhHHHHHHH--------HHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHH-H
Q 039715 179 VFACVYKLGHDSNAFVGTALIDA--------FSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFV-L 249 (805)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l 249 (805)
+++++.+... .+..++..+... |.+.+ +|.+.++ .......|+....... .
T Consensus 130 ~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~e------------------qAl~AL~-lr~~~~~~~~~vL~L~~~ 189 (987)
T PRK09782 130 TVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLP------------------VARAQLN-DATFAASPEGKTLRTDLL 189 (987)
T ss_pred HHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHH------------------HHHHHHH-HhhhCCCCCcHHHHHHHH
Confidence 9999998873 334444444444 55542 3444444 3344455556655555 8
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHc-CCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHH
Q 039715 250 KACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTK-SGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAV 328 (805)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (805)
..+...++++.+..++..+.+.+.. +......|...|.. .++ +.+..+++...+.++..+..+...|.+.|+.++|.
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 8999999999999999999999744 35556667778887 477 99999988655668888999999999999999999
Q ss_pred HHHHHHHHCCCC-CChhHHHHH------------------------------HHHHhccCCchHHHHHH-----------
Q 039715 329 ELFCRMRQAFVA-PNQFTFVSV------------------------------LQACATMEGLDLGNQIH----------- 366 (805)
Q Consensus 329 ~~~~~m~~~g~~-p~~~t~~~l------------------------------l~~~~~~~~~~~a~~~~----------- 366 (805)
.+++++...-.. |+..++..+ +..+.+.++++.++++.
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEE 347 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHH
Confidence 999998654222 333332222 22223333333333221
Q ss_pred ------------------HHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC-C-----ChhhHHHHHHHHHHc
Q 039715 367 ------------------SLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK-R-----NHVTWNTMIVGYVQL 422 (805)
Q Consensus 367 ------------------~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~ 422 (805)
..+.+.. +-+....--+.-...+.|+.++|..+|+..-. + +...-+-++..|.++
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 1111110 11222222333345567888889988877544 1 223444677777777
Q ss_pred CC---hHHHHHH------------HHH----------Hhh-cCCCC---ChhhHHHHHHHHhccCCchhHHHHHHHHHHc
Q 039715 423 GE---VGKAMIM------------FSK----------MLE-EQVPA---TEVTYSSVLRACASLAALEPGMQVHCLTVKA 473 (805)
Q Consensus 423 g~---~~~A~~~------------~~~----------m~~-~g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 473 (805)
+. ..++..+ ..+ ... .+..| +...+..+..++.. ++.++|...+......
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 65 3444333 111 111 11223 34455555555555 7888899977777765
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHH
Q 039715 474 NYDMDVVVANALIDMYAKCGSITDARLVFDMMND--WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVG 550 (805)
Q Consensus 474 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 550 (805)
. |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++.++. .|+.. .+..
T Consensus 506 ~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~ 581 (987)
T PRK09782 506 Q--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWW 581 (987)
T ss_pred C--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHH
Confidence 4 3443444455556789999999999998763 44556778888899999999999999999985 45543 3334
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCC
Q 039715 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNN 628 (805)
Q Consensus 551 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 628 (805)
+.......|++++|...+++.. .+.|+...|..+..++.+.|++++|+..+++. ...|+ ...+..+..++...|+
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 4445567799999999999988 45788889999999999999999999999976 44564 5688999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 629 VEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.++|+..++++++++|+++.++..++.+|...|++++|..
T Consensus 659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999999999988
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=3.5e-22 Score=203.93 Aligned_cols=443 Identities=12% Similarity=0.107 Sum_probs=353.7
Q ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 039715 208 VEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLY 287 (805)
Q Consensus 208 ~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 287 (805)
.+-|.+.| +.|++++|.+.-...-.+. ..+..+...+-..+.+..+++...+--...++.. +.-..+|..+.+.+
T Consensus 52 l~lah~~y---q~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 52 LELAHRLY---QGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHH---hccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHH
Confidence 33444444 3667777766544333322 1122222223334445555554443333333332 23456888899999
Q ss_pred HcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH-HhccCCchHHH
Q 039715 288 TKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQA-CATMEGLDLGN 363 (805)
Q Consensus 288 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~ 363 (805)
-..|++++|+.+++.+.+. .+..|..+..++...|+.+.|...|.+.++ +.|+.+...+-+.- ....|.+++|.
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999988653 466799999999999999999999999887 56776655443333 34578999999
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 039715 364 QIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRN---HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQV 440 (805)
Q Consensus 364 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 440 (805)
..|.+.++.. +--..+|+.|...+...|++..|+..|++..+-| ...|-.|...|...+.+++|+..+.+....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 9999888764 2335678999999999999999999999977644 347889999999999999999999988764
Q ss_pred CCCh-hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHH
Q 039715 441 PATE-VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAM 516 (805)
Q Consensus 441 ~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 516 (805)
.|+. ..+..+...|...|.++.|+..+++.++.. +.-...|+.|..++-..|++.+|.+.+.+... ....+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 5654 467777777889999999999999999875 33567899999999999999999999998873 357789999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhc
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRA 594 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~ 594 (805)
...|...|+.++|..+|....+ +.|.-. .++.|...|-++|++++|+..+++.+ .|+|+ ...|+.|+..|-..
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHh
Confidence 9999999999999999999999 788754 79999999999999999999999988 68997 47899999999999
Q ss_pred CCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 039715 595 GHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 595 g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 666 (805)
|+.++|.+.+.+. .+.|. ....+.|...|...|+..+|+..|+.++++.||.+.+|-.|.-.+.-.-.|.+-
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 9999999999866 56776 457999999999999999999999999999999999999998887777777773
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=2.9e-21 Score=197.31 Aligned_cols=407 Identities=12% Similarity=0.141 Sum_probs=329.7
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChh
Q 039715 249 LKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK---KDVIPWSFMIARYAQTDLSI 325 (805)
Q Consensus 249 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 325 (805)
..-..+.|++.+|.+--..+-... +.+....-.+-..+.+..+.+....--....+ ....+|..+...+-..|+++
T Consensus 55 ah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 55 AHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHH
Confidence 334456788888877655443332 11222222233455555555544332222222 23456889999999999999
Q ss_pred HHHHHHHHHHHCCCCC-ChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhcCChHHHHHHHhc
Q 039715 326 DAVELFCRMRQAFVAP-NQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSD-VFVSNALMDVYAKCGRMENSVELFAE 403 (805)
Q Consensus 326 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~ 403 (805)
+|+.+++.|.+. +| ....|..+..++...|+.+.|.+.+...++.+ |+ ..+.+-+.......|++.+|...|.+
T Consensus 134 ~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 134 DALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 999999999985 45 45678889999999999999999999998764 44 33445566677778999999999877
Q ss_pred CCC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcH
Q 039715 404 SPK--RN-HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDV 479 (805)
Q Consensus 404 ~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 479 (805)
..+ |. .+.|+.|...+-.+|+..+|+..|++... +.|+.. .|..|...+...+.++.|...+.+..... +...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccch
Confidence 544 33 46899999999999999999999999976 456644 78889999999999999999888877654 3456
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 039715 480 VVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSAC 555 (805)
Q Consensus 480 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~ 555 (805)
.++..|.-.|-.+|.+|-|+..+++..+. =...||.|..++...|+..+|...|.+.+. +.|+.. +.+.|...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHH
Confidence 77888888899999999999999998743 367999999999999999999999999998 677654 889999999
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHHcCCHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSV-MIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a 632 (805)
...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+.-+++. .++|+. ..++.++..|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 99999999999999887 46675 467899999999999999999999866 678875 5899999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 633 RLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 633 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++.+++++.++|.-+.++..|+.+|...|...+|..
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 999999999999999999999999999999999987
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.6e-17 Score=189.69 Aligned_cols=404 Identities=10% Similarity=-0.015 Sum_probs=257.1
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChhH
Q 039715 250 KACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQTDLSID 326 (805)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~ 326 (805)
..+...|+++.|...|...++. .|+...|..+...|.+.|++++|...++...+. +...|..+..+|...|++++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555566666666555543 234455556666666666666666666655432 23346666666777777777
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 039715 327 AVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK 406 (805)
Q Consensus 327 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 406 (805)
|+.-|......+.. +......++..... ..+........+.. +.+...+..+.. |........+..-++...+
T Consensus 213 A~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 213 ALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 76666554432111 11111111111111 11222222222221 122222222222 2222122222221222111
Q ss_pred CCh---hhHHHHHHHH---HHcCChHHHHHHHHHHhhcC-CCCC-hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCc
Q 039715 407 RNH---VTWNTMIVGY---VQLGEVGKAMIMFSKMLEEQ-VPAT-EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMD 478 (805)
Q Consensus 407 ~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 478 (805)
.+. ..+..+...+ ...+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...+...++.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 111 1111111111 23467889999999888764 2343 3456666777788899999999999888764 334
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSA 554 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 554 (805)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|++.++ +.|+ ...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHH
Confidence 66788888899999999999999988763 3678899999999999999999999999998 5665 4467777788
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-------HH-HHHHHHHHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-------VM-IWRALLGACI 624 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-------~~-~~~~l~~~~~ 624 (805)
+...|++++|...|+...+. .| +...|..++.+|...|++++|++.|++. ...|+ .. .++..+..+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 88999999999999998843 45 4678889999999999999999999864 33332 11 1222223344
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..|++++|+..++++++++|++..++..|+.+|...|++++|.+
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 46999999999999999999999999999999999999999977
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.8e-15 Score=164.02 Aligned_cols=543 Identities=12% Similarity=0.076 Sum_probs=285.4
Q ss_pred chHHHHHhccCCCCCcc-hHHHHHHHH--HcCCChhHHHHHHHHHHhC--CCCCCcchHHHHHHHHhccCCccchhhHHH
Q 039715 107 LPDATKLFDEMPERNTI-SFVTTIQGY--TVSSQFVEAVGLFSTLHRE--GHELNPFAFTAFLKVLVSMGWAELCPCVFA 181 (805)
Q Consensus 107 ~~~A~~~f~~~~~~~~~-~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 181 (805)
++.|...|..+.+.+.. ..-.|..|+ ...|++..|+.+|...... ...||+.. .+-.++.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 46677777666432111 112233333 3456777777777775542 23334321 22233456677777777777
Q ss_pred HHHHhCCCCchhhHHHHHHHHHhcCCHH---HHHHHHhhh-------------------ccccHHHHHHHHHHHHHCCCC
Q 039715 182 CVYKLGHDSNAFVGTALIDAFSVCGCVE---FARKVFDGL-------------------FNDCFEEALNFFSQMRAVGFK 239 (805)
Q Consensus 182 ~~~~~g~~~~~~~~~~li~~y~~~g~~~---~A~~~~~~~-------------------~~g~~~~A~~~~~~m~~~g~~ 239 (805)
...+... .++..+-.|--+-....+.+ .+..++... ..|+++.+..+...+...-..
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 6666542 12222222211111112211 111111111 334444444444444432211
Q ss_pred --CChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC---CcccHHHH
Q 039715 240 --PNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK---DVIPWSFM 314 (805)
Q Consensus 240 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~l 314 (805)
.-..+|-.+.+++-..|+++.|...|-...+.....-+..+-.|..+|.+.|+++.+...|+.+.+. +..+...|
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 0122355566666666777777666666655432222333445566666777777776666666432 23334444
Q ss_pred HHHHHhCC----ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHH----HhCCCccHHHHHHHHH
Q 039715 315 IARYAQTD----LSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVV----RVGLLSDVFVSNALMD 386 (805)
Q Consensus 315 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~Li~ 386 (805)
...|...+ ..+.|..++.+..+.- .-|...|..+...+.. ++.......+..+. ..+-.+.+.+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 44555443 2344444444444331 2233444444443332 22222244333322 3344455666677777
Q ss_pred HHHhcCChHHHHHHHhcCCCC-------Ch------hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHH
Q 039715 387 VYAKCGRMENSVELFAESPKR-------NH------VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLR 452 (805)
Q Consensus 387 ~y~~~g~~~~A~~~f~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~ 452 (805)
.+...|++++|...|+..... |. .+-..+...+-..++.+.|.++|...... .|.-+ .|..++.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 777777777777666553221 11 11223344445556666677777766654 23333 2333332
Q ss_pred HHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCHhHHHHHHHHHHh-----
Q 039715 453 ACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND-----WNEVSWNAMISGYSM----- 522 (805)
Q Consensus 453 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~----- 522 (805)
.....+...+|...+..+...+ ..++.+++.+.+.|.+...+..|.+-|+.+.+ .|..+.-+|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 2223355666666666665543 44556666666677777777666665544432 244444444444432
Q ss_pred -------CCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 039715 523 -------HGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRA 594 (805)
Q Consensus 523 -------~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 594 (805)
.+..++|+++|.+.+.. .| |...-+.+.-.++..|++.+|+.+|.++.+.. .....+|-.+...|..+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHH
Confidence 23456677777777763 33 44455666666777777777777777776542 23345666777777777
Q ss_pred CCHHHHHHHHHcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 595 GHLDKAAKLIEGI----PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 595 g~~~eA~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
|++-.|+++|+.. --+.++.+...|..++...|.+.+|.+++..+..+.|.++.....++-+..+.+
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 7777777777644 113456667777777777777777777777777777777776666666555443
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.3e-15 Score=165.11 Aligned_cols=602 Identities=12% Similarity=0.075 Sum_probs=409.3
Q ss_pred ChhhHHHHHHHhhcCCChHHHHHHHHHHHHc-CC---CCCcc---hHHHHHHHHHhCC-----------CchHHHHHhcc
Q 039715 55 NSHSYATSLQSCIQNDDLQTAMTIHCQVLKK-GN---CLDLF---ATNVLLNVYVKLN-----------RLPDATKLFDE 116 (805)
Q Consensus 55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~---~~~~~---~~~~ll~~~~~~g-----------~~~~A~~~f~~ 116 (805)
.-.+|..+...|...|..++...+.+..... +. .+... .++.|..-|+..+ -+..|..+|+.
T Consensus 40 ~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~ 119 (1018)
T KOG2002|consen 40 PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDL 119 (1018)
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhH
Confidence 3467888888899999999999887655411 11 11111 1222222222221 23445555554
Q ss_pred CCCCCcchHHHHH---HHHHcCCC--hhHHHHHHHHHHhCCCCCCcchHHHHHHHHh--ccCCccchhhHHHHHHHhC--
Q 039715 117 MPERNTISFVTTI---QGYTVSSQ--FVEAVGLFSTLHREGHELNPFAFTAFLKVLV--SMGWAELCPCVFACVYKLG-- 187 (805)
Q Consensus 117 ~~~~~~~~~~~li---~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g-- 187 (805)
.-.-+...+..++ ..|...|. .+.|...|....+. .|+.. ...+.++|. ..+++..|..+|..++...
T Consensus 120 A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~--sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~ 196 (1018)
T KOG2002|consen 120 ADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQ--SPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPA 196 (1018)
T ss_pred HHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhh--CCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcc
Confidence 3222222222211 12334444 48899999888874 34433 344667766 5679999999999977664
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHhhh----------------------ccccHHHHHHHHHHHHHCCCCCChhhH
Q 039715 188 HDSNAFVGTALIDAFSVCGCVEFARKVFDGL----------------------FNDCFEEALNFFSQMRAVGFKPNNFTF 245 (805)
Q Consensus 188 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~----------------------~~g~~~~A~~~~~~m~~~g~~p~~~t~ 245 (805)
..||+.+.. -..+.++|+.+.|...|.+. ....+..++.++...-... .-|++..
T Consensus 197 ~~aD~rIgi--g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l 273 (1018)
T KOG2002|consen 197 CKADVRIGI--GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVAL 273 (1018)
T ss_pred cCCCccchh--hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHH
Confidence 356654433 35567899999999999877 2233445555555543332 2245567
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhCCCCc--HhHHHHHHHHHHcCCChHHHHHHHhhCCCC---C-cccHHHHHHHHH
Q 039715 246 AFVLKACLGLDTIRVAKSAHGCALKTCYEMD--LYVAVALLDLYTKSGEISNARRIFEEMPKK---D-VIPWSFMIARYA 319 (805)
Q Consensus 246 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~-~~~~~~li~~~~ 319 (805)
+.|..-+.-.|++..+..+...+++...... ...+-.+..+|-..|+++.|...|.+.... + +.++--+...|.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 7777778888999999998888887652221 224556788899999999999998876543 2 345667888899
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC----CchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCh-
Q 039715 320 QTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATME----GLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRM- 394 (805)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~- 394 (805)
..|+.+.+...|+..... .+-+..|...+...|+..+ ..+.|..+.....+.- +.|...|-.+..+|-...-+
T Consensus 354 ~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred HhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH
Confidence 999999999999998875 2334456666666666654 4566777777776654 56677777777776554332
Q ss_pred -----HHHHHHHhc-CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhc---CCCCCh-----h-hHHHHHHHHhccCC
Q 039715 395 -----ENSVELFAE-SPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEE---QVPATE-----V-TYSSVLRACASLAA 459 (805)
Q Consensus 395 -----~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~-t~~~ll~a~~~~~~ 459 (805)
..|..++.. +....+...|.+...+...|++++|...|.+.... ...+|. . +-..+.......++
T Consensus 432 sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhh
Confidence 233333332 22345667889999999999999999999988654 223333 1 23344555667789
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLM 536 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 536 (805)
.+.|.++|..+++.. +.-+..|-.|+-+--..+...+|...+.... ..|+..|.-+...+.....+..|.+-|...
T Consensus 512 ~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 512 TEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 999999999998864 2223333334433344467778888888776 457888998998999999999999877777
Q ss_pred HHcC-CCCCHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 039715 537 QQRG-WRPNNLTFVGVLSACSN------------GGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAK 602 (805)
Q Consensus 537 ~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~ 602 (805)
.+.- ..+|..+..+|.+.|.. .+..+.|+++|.++++ ..| +...-+-++-.++..|++.+|.+
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHH
Confidence 6532 23576777777765542 3456788888888773 345 67778888999999999999999
Q ss_pred HHHcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 603 LIEGIP--FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDF--EPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 603 ~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|.+.. ...+..+|-++...|...|++-.|+++|+..++. ..+++.....|+.++.+.|+|.+|.+
T Consensus 668 IFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 668 IFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred HHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 998773 2234568999999999999999999999999873 34677888999999999999999988
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.3e-17 Score=180.96 Aligned_cols=294 Identities=14% Similarity=0.107 Sum_probs=216.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCcc---HHHHHHHHHH
Q 039715 311 WSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSD---VFVSNALMDV 387 (805)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~ 387 (805)
.......+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3334455677888889999999988753 22344677777777888888888888887776532221 2456666777
Q ss_pred HHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHH
Q 039715 388 YAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGM 464 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 464 (805)
|.+.|++++|..+|+++.+ .+..+++.++..|.+.|++++|++.|+++.+.+..++...
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------ 178 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------ 178 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------
Confidence 7777777777777776654 3455677777777777777777777777765432211100
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 039715 465 QVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW 541 (805)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 541 (805)
....+..+...|.+.|++++|.+.|+++.+. +...+..++..|.+.|++++|+++|+++.+.
T Consensus 179 -------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 243 (389)
T PRK11788 179 -------------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-- 243 (389)
T ss_pred -------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 1123456777788889999999998887632 4667888889999999999999999999884
Q ss_pred CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHH
Q 039715 542 RPN--NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRA 618 (805)
Q Consensus 542 ~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ 618 (805)
.|+ ..++..+..++...|++++|...++.+.+ ..|+...+..++..|.+.|++++|.++++++ ...|+...++.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~ 320 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHR 320 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 344 35678888899999999999999999884 3577777788999999999999999999865 55789888988
Q ss_pred HHHHHHH---cCCHHHHHHHHHHHhc
Q 039715 619 LLGACII---HNNVEIGRLSAQHILD 641 (805)
Q Consensus 619 l~~~~~~---~g~~~~a~~~~~~~~~ 641 (805)
++..+.. +|+.++++..++++++
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHH
Confidence 8877664 5688888888887765
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.8e-16 Score=184.37 Aligned_cols=398 Identities=9% Similarity=-0.018 Sum_probs=272.2
Q ss_pred hHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC---CCcccHHHHHHHHHh
Q 039715 244 TFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK---KDVIPWSFMIARYAQ 320 (805)
Q Consensus 244 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 320 (805)
-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++... .+...+..++..+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445566677888889988888887633 44555688888889999999999999998543 345567788888899
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 039715 321 TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVEL 400 (805)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 400 (805)
.|++++|+..+++..+. .|+...+..+..++...|+.+.|...++.+++.. +.+..++..+..++...|..++|.+.
T Consensus 96 ~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 99999999999998875 3433337777777888999999999999999876 44556666788888888999999999
Q ss_pred HhcCCCCChh--------hHHHHHHHHH-----HcCCh---HHHHHHHHHHhhc-CCCCChh-hHH----HHHHHHhccC
Q 039715 401 FAESPKRNHV--------TWNTMIVGYV-----QLGEV---GKAMIMFSKMLEE-QVPATEV-TYS----SVLRACASLA 458 (805)
Q Consensus 401 f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~ 458 (805)
++.... ++. ....++..+. ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|
T Consensus 173 l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 173 IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 887765 211 1112222221 12233 6788888888754 2233221 111 1133445667
Q ss_pred CchhHHHHHHHHHHcCCC-CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCC-------HhHHHHHHHHHHhCCChHHHH
Q 039715 459 ALEPGMQVHCLTVKANYD-MDVVVANALIDMYAKCGSITDARLVFDMMNDWN-------EVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~ 530 (805)
+.++|+..++.+.+.+.+ |+ .....+...|...|++++|+..|+++.+.+ ...+..+..++.+.|++++|+
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 888888888888776532 22 122235667888888888888888775332 234555666778888888888
Q ss_pred HHHHHHHHcC-----------CCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC
Q 039715 531 KVFDLMQQRG-----------WRPNN---LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG 595 (805)
Q Consensus 531 ~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 595 (805)
.+++++.+.. -.|+. ..+..+...+...|++++|+..++++... .| +...+..++.++.+.|
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcC
Confidence 8888887642 01231 13345555677778888888888887743 34 4667777788888888
Q ss_pred CHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 039715 596 HLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 596 ~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
++++|++.+++. ...|| ...+..++..+...|++++|+..++++++..|+++.+.
T Consensus 408 ~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 408 WPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 888888888765 34554 45666666677777888888888888888888776543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.1e-16 Score=182.25 Aligned_cols=350 Identities=11% Similarity=-0.002 Sum_probs=274.3
Q ss_pred cCCChHHHHHHHhhCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHH
Q 039715 289 KSGEISNARRIFEEMPKK------DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLG 362 (805)
Q Consensus 289 ~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 362 (805)
+..+++.-.-.|..-++. +..-...++..+.+.|++++|+.+++..+.....+ ...+..++.++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 455666655566655542 22335567788889999999999999988764443 33444555666779999999
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 039715 363 NQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQ 439 (805)
Q Consensus 363 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 439 (805)
...++.+++.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999999876 55567788889999999999999999988654 356688899999999999999999999887654
Q ss_pred CCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHH
Q 039715 440 VPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAM 516 (805)
Q Consensus 440 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 516 (805)
|+.......+..+...|++++|...+..+.+....++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 333322222345778899999999999888765444455556667888999999999999998863 367788899
Q ss_pred HHHHHhCCChHH----HHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHH
Q 039715 517 ISGYSMHGLSAE----VLKVFDLMQQRGWRPNN-LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSL 590 (805)
Q Consensus 517 i~~~~~~g~~~~----A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 590 (805)
...|...|++++ |+..|++..+ +.|+. ..+..+...+...|++++|...+++... ..|+ ...+..+..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 999999999986 8999999998 56754 4788888889999999999999999884 4564 5677788999
Q ss_pred HHhcCCHHHHHHHHHcCC-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 039715 591 LGRAGHLDKAAKLIEGIP-FQPSVMI-WRALLGACIIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~~-~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
|.+.|++++|.+.++++. ..|+... +..+..++...|+.++|+..++++++..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999998773 4566544 44456778899999999999999999999764
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=3.7e-17 Score=177.33 Aligned_cols=293 Identities=10% Similarity=0.019 Sum_probs=199.5
Q ss_pred HHHHHcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---hhHHHHHHHHHhccC
Q 039715 284 LDLYTKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPN---QFTFVSVLQACATME 357 (805)
Q Consensus 284 i~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~ 357 (805)
...+...|++++|...|.++.+. +..+|..+...+...|++++|+..++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33467789999999999999754 344688899999999999999999999987543222 245778888899999
Q ss_pred CchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCC--------hhhHHHHHHHHHHcCChHHHH
Q 039715 358 GLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRN--------HVTWNTMIVGYVQLGEVGKAM 429 (805)
Q Consensus 358 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~--------~~~~~~li~~~~~~g~~~~A~ 429 (805)
+++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|+
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998764 4567889999999999999999999999876432 124566778888999999999
Q ss_pred HHHHHHhhcCCCCC-hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC--
Q 039715 430 IMFSKMLEEQVPAT-EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN-- 506 (805)
Q Consensus 430 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-- 506 (805)
..|+++.+.. |+ ...+..+...+.+.|++++|.+++..+.+.+......+++.++.+|.+.|++++|.+.++++.
T Consensus 201 ~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998753 33 334555555666666666666666666554322223445555555666666666665555544
Q ss_pred CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCCChH
Q 039715 507 DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSN---GGLLEQGEAYFKSMVANYGIEPCIE 582 (805)
Q Consensus 507 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~ 582 (805)
.|+...+..++..+.+.|++++|+.+|+++.+ ..|+..++..++..+.. .|+.+++...++.|.++ ++.|++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 23333445555555555555566655555555 24555555555544332 33555555555555544 4444443
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=6.9e-16 Score=176.36 Aligned_cols=410 Identities=12% Similarity=-0.010 Sum_probs=283.0
Q ss_pred cccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHH
Q 039715 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRI 299 (805)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 299 (805)
.|++++|+..|++.+. +.|+...|..+..++...|+++.|...+...++.. +.+...+..+...|...|++++|..-
T Consensus 140 ~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred cCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3445555555556554 45777889999999999999999999999999875 33566888899999999999999988
Q ss_pred HhhCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCc
Q 039715 300 FEEMPKKDVI---PWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLS 376 (805)
Q Consensus 300 f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 376 (805)
|......+.. ....++..+.. ..+........+.. .++...+..+ ..+......+....-+....+ ..+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~ 288 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSNE--LDE 288 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhhhcccc--ccc
Confidence 7655322211 11111111111 22333333333321 1111122212 112111111111111111111 011
Q ss_pred cH-HHHHHHHHHH---HhcCChHHHHHHHhcCCCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC-hh
Q 039715 377 DV-FVSNALMDVY---AKCGRMENSVELFAESPKR------NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPAT-EV 445 (805)
Q Consensus 377 ~~-~~~~~Li~~y---~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 445 (805)
+. ..+..+...+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.++. .|+ ..
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~ 366 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQ 366 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHH
Confidence 10 0111111111 2346789999999876532 4457888888999999999999999999875 455 44
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHh
Q 039715 446 TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSM 522 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 522 (805)
.|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+.+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 77788888899999999999999998875 45678899999999999999999999998864 356788889999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh-H-------HHHHHHHHHHh
Q 039715 523 HGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI-E-------HYTSMVSLLGR 593 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~~~~li~~~~~ 593 (805)
.|++++|+..|++.++ ..|+ ...+..+..++...|++++|+..|+.... +.|+. . .++.....+..
T Consensus 446 ~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 446 EGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999988 4565 56788888899999999999999999874 44431 1 12222233445
Q ss_pred cCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 594 AGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 594 ~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.|++++|.+++++. ...|+ ...+..++..+...|++++|+..+++++++.+....
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 79999999999875 45565 457999999999999999999999999999886444
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=5.9e-16 Score=180.08 Aligned_cols=385 Identities=8% Similarity=0.005 Sum_probs=291.5
Q ss_pred CcHhHHHHHHHHHHcCCChHHHHHHHhhCCC-C--CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHH
Q 039715 275 MDLYVAVALLDLYTKSGEISNARRIFEEMPK-K--DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPN-QFTFVSVL 350 (805)
Q Consensus 275 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 350 (805)
.+.....-.+......|+.++|++++.+... . +...+..+...+...|++++|+.+|++..+. .|+ ......+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3444555667778889999999999998764 2 3334899999999999999999999998875 344 45566777
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHH
Q 039715 351 QACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGK 427 (805)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 427 (805)
..+...|++++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ .+...+..+...+...|..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 78899999999999999999874 45556 88899999999999999999998664 255667778888999999999
Q ss_pred HHHHHHHHhhcCCCCChh------hHHHHHHHHh-----ccCCc---hhHHHHHHHHHHc-CCCCcH--hHHHH---HHH
Q 039715 428 AMIMFSKMLEEQVPATEV------TYSSVLRACA-----SLAAL---EPGMQVHCLTVKA-NYDMDV--VVANA---LID 487 (805)
Q Consensus 428 A~~~~~~m~~~g~~p~~~------t~~~ll~a~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~--~~~~~---li~ 487 (805)
|++.+++... .|+.. ....++.... ..+++ +.|.+.++.+.+. ...|+. ..... .+.
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 9999987654 33320 1111222221 11223 6677777777754 222222 11111 123
Q ss_pred HHHhcCCHHHHHHHhhhcCCCC---Hh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcC
Q 039715 488 MYAKCGSITDARLVFDMMNDWN---EV-SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-----NLTFVGVLSACSNG 558 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~ 558 (805)
++...|++++|++.|+++.+.+ +. .-..+...|...|++++|+..|+++.+. .|. ......+..++...
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhc
Confidence 4457799999999999998542 11 1222577899999999999999998874 333 23456667788999
Q ss_pred CCHHHHHHHHHHHHHhcC----------CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 559 GLLEQGEAYFKSMVANYG----------IEPC---IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 559 g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
|++++|.++++.+..... -.|+ ...+..++.++...|++++|++.++++ ...| +...|..++..+
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999885421 1122 234567788999999999999999986 2334 567899999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...|+.++|+..++++++++|+++..+..++.++...|+|++|.+
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999999999999987
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=9.9e-16 Score=174.32 Aligned_cols=316 Identities=8% Similarity=-0.017 Sum_probs=259.9
Q ss_pred hhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHH
Q 039715 343 QFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGY 419 (805)
Q Consensus 343 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 419 (805)
......++..+.+.|+++.|..+++.++.....+ ......++..+...|++++|...|+++.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667788899999999999999999876444 44555566777789999999999999764 3566888999999
Q ss_pred HHcCChHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 039715 420 VQLGEVGKAMIMFSKMLEEQVPAT-EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDA 498 (805)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 498 (805)
.+.|++++|+..|++.... .|+ ...+..+...+...|+.++|...+..+......+ ...+..+. .+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHHH-HHHHcCCHHHH
Confidence 9999999999999999875 454 4467788889999999999999999887765333 33333333 47889999999
Q ss_pred HHHhhhcCCC----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHH----HHHHHH
Q 039715 499 RLVFDMMNDW----NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQ----GEAYFK 569 (805)
Q Consensus 499 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~~~~ 569 (805)
...++.+.+. +...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999987643 3334555677889999999999999999984 454 4567778888999999986 899999
Q ss_pred HHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 570 SMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 570 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
++.. +.| +...+..++.+|.+.|++++|...+++. ...|+ ...+..+..++...|++++|+..++++++..|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9884 456 4678999999999999999999999876 34454 5678889999999999999999999999999998
Q ss_pred cchHHHHHHHHHhcCChHHHhh
Q 039715 647 EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 647 ~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+..+..++.+|...|++++|.+
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHH
Confidence 8878888999999999999998
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=2.4e-14 Score=163.12 Aligned_cols=422 Identities=11% Similarity=0.034 Sum_probs=301.3
Q ss_pred ccccHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHH
Q 039715 219 FNDCFEEALNFFSQMRAVGFKPNN--FTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNA 296 (805)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 296 (805)
++|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|...++..+.. -........++...|...|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5677778888888887653 443 233 7777788889999999999988811 122233444446688899999999
Q ss_pred HHHHhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 039715 297 RRIFEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVG 373 (805)
Q Consensus 297 ~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 373 (805)
.++|+++.+. +...+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++++++..
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999999764 3445777888999999999999999999774 5666666444444445666666999999999886
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCC-Chhh--H--HHHHHHHHH---------cCC---hHHHHHHHHHHh
Q 039715 374 LLSDVFVSNALMDVYAKCGRMENSVELFAESPKR-NHVT--W--NTMIVGYVQ---------LGE---VGKAMIMFSKML 436 (805)
Q Consensus 374 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~--~--~~li~~~~~---------~g~---~~~A~~~~~~m~ 436 (805)
+.+...+..++....+.|-...|.++..+-+.- +... | ...+.-.++ ..+ .+.|+.-++.+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 567778888899999999999999988876531 1111 1 000111111 122 344555566655
Q ss_pred hc-CCCCChh-h----HHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC--
Q 039715 437 EE-QVPATEV-T----YSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW-- 508 (805)
Q Consensus 437 ~~-g~~p~~~-t----~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-- 508 (805)
.. +..|... - ..--+-++...++..++++.++.+...+.+....+-.++.++|...+++++|+.+|..+...
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 42 2223221 1 22345567788889999999999998887666778888999999999999999999887532
Q ss_pred -------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-----------CC--CHH-HHHHHHHHHHcCCCHHHHHHH
Q 039715 509 -------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW-----------RP--NNL-TFVGVLSACSNGGLLEQGEAY 567 (805)
Q Consensus 509 -------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p--~~~-t~~~ll~a~~~~g~~~~a~~~ 567 (805)
+......|.-+|...+++++|..+++++.+.-. .| |-. .+..+...+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233356788888999999999999999887311 12 222 234455667888999999999
Q ss_pred HHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 568 FKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 568 ~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
++.+.. ..| |......+.+++...|++.+|++.++.+ ...|+ ..+...++.++...|++++|....+.+++..|
T Consensus 439 le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 439 LEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 998873 355 7788888899999999999999998765 24554 45666777777888999999999999999999
Q ss_pred CCcchH
Q 039715 645 EDEATH 650 (805)
Q Consensus 645 ~~~~~~ 650 (805)
+++..-
T Consensus 516 e~~~~~ 521 (822)
T PRK14574 516 EDIPSQ 521 (822)
T ss_pred CchhHH
Confidence 887543
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=4.3e-14 Score=139.41 Aligned_cols=319 Identities=14% Similarity=0.146 Sum_probs=244.7
Q ss_pred hhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH--hCCCch-------------------------
Q 039715 56 SHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYV--KLNRLP------------------------- 108 (805)
Q Consensus 56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g~~~------------------------- 108 (805)
..+=+++++. ...|.+.++.-+++.|...|.+.+..+--.|+..-+ ...++.
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4455566553 456789999999999999998877766555554432 221211
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCC
Q 039715 109 DATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGH 188 (805)
Q Consensus 109 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 188 (805)
-|.-+|+..| +...+|.+||.|.++-...+.|.++|++-.....+.+..+||.+|.+-.- ..++.+...|+....
T Consensus 195 vAdL~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 195 VADLLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKM 269 (625)
T ss_pred HHHHHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhc
Confidence 1222333333 35568999999999999999999999999998899999999999987653 334889999999999
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHH-HHHHHHH
Q 039715 189 DSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRV-AKSAHGC 267 (805)
Q Consensus 189 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~ 267 (805)
.||..++|++++..++.|+++.|++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..+...
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~a-----------alqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKA-----------ALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHH-----------HHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 99999999999999999999998885 56789999999999999999999999999888754 3344444
Q ss_pred HHHh--C--C----CCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC--------C---cccHHHHHHHHHhCCChhHHH
Q 039715 268 ALKT--C--Y----EMDLYVAVALLDLYTKSGEISNARRIFEEMPKK--------D---VIPWSFMIARYAQTDLSIDAV 328 (805)
Q Consensus 268 ~~~~--g--~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--------~---~~~~~~li~~~~~~g~~~~A~ 328 (805)
+... | + +.|...+..-++.+.+..+.+-|.++-.-.... + ..-|..+....++....+.-+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 1 2 234555666777777888988888876655432 1 122667788889999999999
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 039715 329 ELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKC 391 (805)
Q Consensus 329 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 391 (805)
..|+.|.-.-.-|+..+...++++....+.++...+++..++..|.........-++...++.
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 999999888788999999999999999999999999999999888655555544444444443
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=5.4e-14 Score=160.26 Aligned_cols=408 Identities=10% Similarity=-0.004 Sum_probs=301.6
Q ss_pred HhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHH-HH--HHHHHhCCChhHH
Q 039715 251 ACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWS-FM--IARYAQTDLSIDA 327 (805)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~l--i~~~~~~g~~~~A 327 (805)
...+.|+++.|...+.++++..+.....++ .++..+...|+.++|+..+++...++...+. .+ ...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345789999999999999988644333444 8888899999999999999999876544433 33 4578888999999
Q ss_pred HHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 039715 328 VELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKR 407 (805)
Q Consensus 328 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 407 (805)
+++|+++.+.... +...+..++..+...++.++|.+.++.+.+.. |+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999886432 34566677778899999999999999998764 44555555555555567776799999987653
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHH-----------HHHHHH-----hccCC---chhHHH
Q 039715 408 ---NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYS-----------SVLRAC-----ASLAA---LEPGMQ 465 (805)
Q Consensus 408 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-----------~ll~a~-----~~~~~---~~~a~~ 465 (805)
+...+..+..++.+.|-...|+++..+- |+.++-. ..++.- ....+ .+.+..
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 5567788888999999999998777653 3222211 111110 01112 233444
Q ss_pred HHHHHHHc-CC-CCcHhH-HH---HHHHHHHhcCCHHHHHHHhhhcCCC----CHhHHHHHHHHHHhCCChHHHHHHHHH
Q 039715 466 VHCLTVKA-NY-DMDVVV-AN---ALIDMYAKCGSITDARLVFDMMNDW----NEVSWNAMISGYSMHGLSAEVLKVFDL 535 (805)
Q Consensus 466 ~~~~~~~~-~~-~~~~~~-~~---~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~ 535 (805)
-++.+... +- ++.... .. -.+-++.+.|+..++++.|+.+... -..+--++..+|...+++++|+.+|++
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44444431 11 222111 22 3344677889999999999999843 234556788999999999999999999
Q ss_pred HHHcCC----CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC----------CCCCh---HHHHHHHHHHHhcCCH
Q 039715 536 MQQRGW----RP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYG----------IEPCI---EHYTSMVSLLGRAGHL 597 (805)
Q Consensus 536 m~~~g~----~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~~---~~~~~li~~~~~~g~~ 597 (805)
+..... .| +......|.-++...+++++|..+++.+.+... -.|+. ..+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 976431 12 333357788899999999999999999986311 01222 4455677888999999
Q ss_pred HHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 598 DKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 598 ~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+|++.++++ ..- -|..++..+...++..|+..+|+..++.+..++|++......++..+...|+|++|.+
T Consensus 433 ~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 433 PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999987 223 4788999999999999999999999999999999999999999999999999999976
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.68 E-value=1.4e-10 Score=120.86 Aligned_cols=577 Identities=11% Similarity=0.046 Sum_probs=372.6
Q ss_pred CCChhhHHHHHHHh-----hcCCChHHHHHHHHHHHHcCCC-CCcchHHHHHHHHHhCCCchHHHHHhccCC---CCCcc
Q 039715 53 EFNSHSYATSLQSC-----IQNDDLQTAMTIHCQVLKKGNC-LDLFATNVLLNVYVKLNRLPDATKLFDEMP---ERNTI 123 (805)
Q Consensus 53 ~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~---~~~~~ 123 (805)
.-|+..|.+=|.+- ...++...|+.++..+.+..+. |+-.+..+-+. -..|++..|+.+..+=- .++..
T Consensus 243 vvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLE--EvagKl~~Ar~~I~~GCe~cprSeD 320 (913)
T KOG0495|consen 243 VVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLE--EVAGKLSVARNLIMKGCEECPRSED 320 (913)
T ss_pred ccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH--HHhhHHHHHHHHHHHHHhhCCchHH
Confidence 34455565555542 2345778888888888888763 44344333333 45677777777664321 12223
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcc-hH---------------------------HHHHHHHhccCCccc
Q 039715 124 SFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPF-AF---------------------------TAFLKVLVSMGWAEL 175 (805)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---------------------------~~ll~~~~~~~~~~~ 175 (805)
.|---|+ -...+.|..+.....+ .-|+.+ .| ..|-++.....+.+.
T Consensus 321 vWLeaiR----Lhp~d~aK~vvA~Avr--~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~d 394 (913)
T KOG0495|consen 321 VWLEAIR----LHPPDVAKTVVANAVR--FLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPED 394 (913)
T ss_pred HHHHHHh----cCChHHHHHHHHHHHH--hCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHH
Confidence 3322111 1122223333333222 112211 11 112233333344444
Q ss_pred hhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCC
Q 039715 176 CPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGL 255 (805)
Q Consensus 176 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 255 (805)
|+-++....+.- +.+. -|.-+|++..-++.|++++. +.++. +.-+...|.+....=-..
T Consensus 395 arilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLN---------------kaRe~-iptd~~IWitaa~LEE~n 453 (913)
T KOG0495|consen 395 ARILLERAVECC-PQSM----DLWLALARLETYENAKKVLN---------------KAREI-IPTDREIWITAAKLEEAN 453 (913)
T ss_pred HHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHH---------------HHHhh-CCCChhHHHHHHHHHHhc
Confidence 444444444432 1111 22333444444454555444 33332 333444555444444455
Q ss_pred CCHHHHHHHHHHH----HHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC-----C-CcccHHHHHHHHHhCCChh
Q 039715 256 DTIRVAKSAHGCA----LKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK-----K-DVIPWSFMIARYAQTDLSI 325 (805)
Q Consensus 256 ~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-----~-~~~~~~~li~~~~~~g~~~ 325 (805)
|+.+....+.+.- ...|...+..-|-.=...+-+.|..-.+..+...... . --.+|+.-...|.+.+.++
T Consensus 454 gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ 533 (913)
T KOG0495|consen 454 GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE 533 (913)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH
Confidence 6665555554432 3345555555555545555555555555444443321 1 2345777777777888888
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC
Q 039715 326 DAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESP 405 (805)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 405 (805)
-|..+|...++. .+-+...|......--..|..+....+++.++..- +.....|-....-+-..|++..|+.++...-
T Consensus 534 carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 534 CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 888888777664 23344455555555556677788888888877764 3445566666777777899999888877644
Q ss_pred C---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHH
Q 039715 406 K---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVA 482 (805)
Q Consensus 406 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 482 (805)
+ .+...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..---+++.++|.++++..++. ++.-...|
T Consensus 612 ~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~ 688 (913)
T KOG0495|consen 612 EANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLW 688 (913)
T ss_pred HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHH
Confidence 3 25667888888888899999999999988764 566666655555556678889999999888876 35556788
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 039715 483 NALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGG 559 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 559 (805)
..+...|-+.++++.|.+.|..-.+. .+-.|-.+...--+.|....|..+|++..-.+ +-|...|...+..-.+.|
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAG 767 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcC
Confidence 88999999999999999998877643 45678888888888899999999999988753 225667888888889999
Q ss_pred CHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039715 560 LLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHI 639 (805)
Q Consensus 560 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 639 (805)
+.++|..+..+.+++ .+.+...|..-|.+..+.++-..+.+.+++.. .|+.+.-+....+....+++.|...|+++
T Consensus 768 n~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 768 NKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred CHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888865 44466788888889888888888888888775 56666677777788889999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 640 LDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 640 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++++|++..++..+-..+...|.=++-.+
T Consensus 844 vk~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 844 VKKDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred HccCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999996655544
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.65 E-value=2.4e-10 Score=119.22 Aligned_cols=493 Identities=12% Similarity=0.043 Sum_probs=387.1
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHH
Q 039715 132 YTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFA 211 (805)
Q Consensus 132 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 211 (805)
-+.-.+.+.|.-++.+..+ +-|.. .-|.-++++...++.|+.++....+. ++.+..+|.+-...--..|..+..
T Consensus 386 AVelE~~~darilL~rAve--ccp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVE--CCPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHhccChHHHHHHHHHHHH--hccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHH
Confidence 3444566778888888887 33332 34556777888889999999888765 567888888877777778888877
Q ss_pred HHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCc--HhHHHHHHHHHHc
Q 039715 212 RKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMD--LYVAVALLDLYTK 289 (805)
Q Consensus 212 ~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~ 289 (805)
.++.++- +.++...|+..+..-|..=..+|-..|..-....+...++..|++.. ..+|+.-...+.+
T Consensus 460 ~kii~rg-----------l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 460 EKIIDRG-----------LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHHHHH-----------HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 7777632 44567788999988888888899999999999999998888887543 4588888899999
Q ss_pred CCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHH
Q 039715 290 SGEISNARRIFEEMPK---KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIH 366 (805)
Q Consensus 290 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 366 (805)
.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++.... .+-....+....+-.-..|++..|+.++
T Consensus 529 ~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred cchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999987764 34556887777777789999999999999875 2223444545555566779999999999
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCh
Q 039715 367 SLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK--RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE 444 (805)
Q Consensus 367 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 444 (805)
..+.+.. +.+..+|-+-+..-.....++.|+.+|.+... +....|.--+..---.+..++|++++++.++. -|+.
T Consensus 608 ~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f 684 (913)
T KOG0495|consen 608 DQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDF 684 (913)
T ss_pred HHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCch
Confidence 9999877 44788999999999999999999999987553 45566766666666678999999999998874 5665
Q ss_pred h-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHH
Q 039715 445 V-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGY 520 (805)
Q Consensus 445 ~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 520 (805)
. .|..+.+.+.+.++++.|+..|..-.+. .+..+..|-.|.+.--+.|.+-.|+.+|++..- .|...|-..|..-
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRME 763 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 5 6777778888899999999888765554 245677899999999999999999999998863 3788999999999
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 600 (805)
.+.|+.+.|..+..+.++. ++.+...|..-|...-+.++-......+ . ..+-|+.+.-.+..++-...+++.|
T Consensus 764 lR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL---k---kce~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL---K---KCEHDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH---H---hccCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998885 4445556766666666666644443332 2 3456777788888999999999999
Q ss_pred HHHHHcC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 601 AKLIEGI-PFQPSV-MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 601 ~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
.+.|++. ...||. .+|--+...+.+||.-+.-.+++.+...-+|.....+...
T Consensus 837 r~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 9999976 445654 5888899999999999999999999999999775544443
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=1.8e-11 Score=132.71 Aligned_cols=540 Identities=13% Similarity=0.065 Sum_probs=301.6
Q ss_pred hCCCchHHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHhccCCccchhh
Q 039715 103 KLNRLPDATKLFDEMPE---RNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELN-PFAFTAFLKVLVSMGWAELCPC 178 (805)
Q Consensus 103 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~ 178 (805)
..|++++|.+++.++.. ++...|.+|...|-+.|+.++++..+-.... +.|. ...|..+-....+.|++..|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 34999999999988764 4566899999999999998888766544433 4454 4577788888888899999999
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHH----HHHHHhhC
Q 039715 179 VFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFA----FVLKACLG 254 (805)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~ 254 (805)
.+..+++... ++....---...|-+.|+...|..-|. ++.......|..-+. .++..+..
T Consensus 229 cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~---------------~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 229 CYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFL---------------QLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHH---------------HHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 9999988873 344333344556666666655544444 444433222222222 22334444
Q ss_pred CCCHHHHHHHHHHHHHhC-CCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC----CCcccH------------------
Q 039715 255 LDTIRVAKSAHGCALKTC-YEMDLYVAVALLDLYTKSGEISNARRIFEEMPK----KDVIPW------------------ 311 (805)
Q Consensus 255 ~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~------------------ 311 (805)
.++-+.|.+.++.....+ -..+...++.++.+|.+....+.|......+.. +|..-|
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 555566666666555522 233445666777777777777777666655533 221111
Q ss_pred ----H----HHHHHHHhCCChhHHHHHHHHHHHCC--CCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHH
Q 039715 312 ----S----FMIARYAQTDLSIDAVELFCRMRQAF--VAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVS 381 (805)
Q Consensus 312 ----~----~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 381 (805)
+ -+.-++......+....+........ +.-+...|.-+..++.+.|.+.+|..++..+.......+..+|
T Consensus 373 ~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 373 ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 1 11222333333333333333333333 2333445666666666666666666666666665544456666
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhh--------cCCCCChhhHHHH
Q 039715 382 NALMDVYAKCGRMENSVELFAESPKR---NHVTWNTMIVGYVQLGEVGKAMIMFSKMLE--------EQVPATEVTYSSV 450 (805)
Q Consensus 382 ~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~l 450 (805)
-.+..+|...|..++|.+.|+.+..- +...--+|-..|.+.|+.++|.+.+..+.. .+..|+.......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 66666666666666666666664432 222333444556666666666666666532 1123333333344
Q ss_pred HHHHhccCCchhHHHHHHHHHHcC-----CCCc-----------------HhHHHHHHHHHHhcCCHHHHHHHhhhc---
Q 039715 451 LRACASLAALEPGMQVHCLTVKAN-----YDMD-----------------VVVANALIDMYAKCGSITDARLVFDMM--- 505 (805)
Q Consensus 451 l~a~~~~~~~~~a~~~~~~~~~~~-----~~~~-----------------~~~~~~li~~y~~~g~~~~A~~~~~~~--- 505 (805)
...+.+.|+.++-..+-..++... +-|+ ......++.+-.+.++.....+-...-
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 444555555555444433333311 0000 001111122222222211111111000
Q ss_pred -----CCCCHhHH----HHHHHHHHhCCChHHHHHHHHHHHHcCCC--CCHH--HH-HHHHHHHHcCCCHHHHHHHHHHH
Q 039715 506 -----NDWNEVSW----NAMISGYSMHGLSAEVLKVFDLMQQRGWR--PNNL--TF-VGVLSACSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 506 -----~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~m 571 (805)
..-...-| .-++..+++.+++++|+.+...+.+..+. ++.. .+ ...+.++...+++.+|..+++.|
T Consensus 613 ~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 613 RAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 00012223 34567888999999999999888774322 2221 22 23445667889999999999999
Q ss_pred HHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHhccCCC
Q 039715 572 VANYGIEPC---IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGA--CIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 572 ~~~~~~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
...++...+ ...|++....+.+.|+-.-=..++... ..+|+....-.++.+ ....+.+.-|+..+-++....|+
T Consensus 693 i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd 772 (895)
T KOG2076|consen 693 ITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD 772 (895)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC
Confidence 876554443 345665556666666544444454433 223332111122222 34567788899999999999999
Q ss_pred CcchHHHHHHHHHhc
Q 039715 646 DEATHVLLSNIYAMA 660 (805)
Q Consensus 646 ~~~~~~~l~~~~~~~ 660 (805)
+|..-.+||-.+...
T Consensus 773 ~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 773 SPLINLCLGLAFIHL 787 (895)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999888888766544
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=1.1e-11 Score=123.12 Aligned_cols=272 Identities=14% Similarity=0.088 Sum_probs=202.5
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhhH----HHH-HHHHHHc-CChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCC
Q 039715 386 DVYAKCGRMENSVELFAESPKRNHVTW----NTM-IVGYVQL-GEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAA 459 (805)
Q Consensus 386 ~~y~~~g~~~~A~~~f~~~~~~~~~~~----~~l-i~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 459 (805)
.-|.+.|+++.|.+++.-..++|..+- |.| +--|.+. .++..|.++-+...... +-+....+.-.+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 357899999999998877766543322 222 2223333 34566666655544321 1122222222223345689
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLM 536 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 536 (805)
+++|.+.+.+.+...-. -+...-.+.-.|-+.|++++|++.|-++. ..++...-.+.+.|-...+..+|++++-+.
T Consensus 506 ~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999999876533 23333344556788999999999998764 457777778889999999999999999888
Q ss_pred HHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCCCH
Q 039715 537 QQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI-EPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP-FQPSV 613 (805)
Q Consensus 537 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~ 613 (805)
.. +-| |+..+.-|...|-+.|+-.+|.+++-.- |.. +.+.++..-|...|....-.++|+.+|++.. ++|+.
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 77 555 5667888888999999999999886543 343 4488899999999999999999999999874 68999
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 039715 614 MIWRALLGAC-IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWE 664 (805)
Q Consensus 614 ~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 664 (805)
.-|..++..| ++.|+++.|...|+......|++...+-.|..+....|.-+
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 9999999886 56899999999999999999999999999998888887543
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.8e-11 Score=118.93 Aligned_cols=405 Identities=15% Similarity=0.139 Sum_probs=271.1
Q ss_pred cccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhh--CCCCHHHH-HHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHH
Q 039715 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACL--GLDTIRVA-KSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNA 296 (805)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 296 (805)
+|..+++.-+++.|+..|+..+...--.++...+ ...++--+ ++-|-.|.+.| +.+..+| |.|++.+
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd- 197 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD- 197 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH-
Confidence 3445566666678888887766655444444322 22222211 12233333333 1222222 4555544
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCc
Q 039715 297 RRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLS 376 (805)
Q Consensus 297 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 376 (805)
++-+...+...++.+||.|+++--..+.|.+++++-.....+.+..+||.++.+-.- ..++.+..+|+...+.|
T Consensus 198 --L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 198 --LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred --HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 444444456688999999999999999999999999988889999999999987543 34488999999999999
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHH----hcCC----CCChhhHHHHHHHHHHcCChHH-HHHHHHHHhh----cCCCC-
Q 039715 377 DVFVSNALMDVYAKCGRMENSVELF----AESP----KRNHVTWNTMIVGYVQLGEVGK-AMIMFSKMLE----EQVPA- 442 (805)
Q Consensus 377 ~~~~~~~Li~~y~~~g~~~~A~~~f----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p- 442 (805)
|..++|+++.+.++.|+++.|++-+ .+|+ +|...+|..+|..+++.++..+ |..++.+++. ...+|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 9999999999999999988876554 3443 5788899999999999888754 5555555543 22333
Q ss_pred ---ChhhHHHHHHHHhccCCchhHHHHHHHHHHcC----CCCc---HhHHHHHHHHHHhcCCHHHHHHHhhhcCC----C
Q 039715 443 ---TEVTYSSVLRACASLAALEPGMQVHCLTVKAN----YDMD---VVVANALIDMYAKCGSITDARLVFDMMND----W 508 (805)
Q Consensus 443 ---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~ 508 (805)
|...|.+.+..|.+..+.+.|.++++...... +.++ ..-|..+.++.+....++.-...|+.|.. +
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 34468889999999999999999998776421 2232 34566788888999999999999998874 3
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--------------------CHHHHHH-H
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGG--------------------LLEQGEA-Y 567 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--------------------~~~~a~~-~ 567 (805)
+..+-.-++.+....|+++-.-+++..+...|..-+...-..++.-+++.. ++.++.+ -
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555566777777777777777777776653333322222222222221 1111111 1
Q ss_pred HHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039715 568 FKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPSVMIWRALLGACIIHNNVEIGRLSAQHIL 640 (805)
Q Consensus 568 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 640 (805)
-.+|. ..+......++..-++.|.|+.++|.+++.-. |..|.....--+..+-.+.++...|..+++-+.
T Consensus 512 ~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 512 PIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11222 23445667888999999999999999988633 444444444456666777888888998888776
Q ss_pred ccC
Q 039715 641 DFE 643 (805)
Q Consensus 641 ~~~ 643 (805)
+.+
T Consensus 589 ~~n 591 (625)
T KOG4422|consen 589 AFN 591 (625)
T ss_pred HcC
Confidence 644
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=4.5e-10 Score=122.01 Aligned_cols=149 Identities=14% Similarity=0.063 Sum_probs=110.9
Q ss_pred hhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccC---CCCCcchHHHHHHHHHcCCChhHHH
Q 039715 66 CIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEM---PERNTISFVTTIQGYTVSSQFVEAV 142 (805)
Q Consensus 66 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~ 142 (805)
....|++++|..++..+++..+ .....|-.|...|-..|+.+++...+-.. ...|..-|-.+..-..+.|++++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 3445999999999999999876 46678999999999999999998766432 3346678999999999999999999
Q ss_pred HHHHHHHhCCCCCCcc-hHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHH----HHHHHhcCCHHHHHHHHhh
Q 039715 143 GLFSTLHREGHELNPF-AFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTAL----IDAFSVCGCVEFARKVFDG 217 (805)
Q Consensus 143 ~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~y~~~g~~~~A~~~~~~ 217 (805)
-.|.+..+. .|+.. .+---...|-+.|+...|...+.++.....+.|..-.-.+ +..|...++-+.|.+.++.
T Consensus 228 ~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 228 YCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999884 44443 4444456788899999999999999987754443333333 4444455555666655553
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.55 E-value=1.6e-11 Score=132.07 Aligned_cols=201 Identities=11% Similarity=0.020 Sum_probs=131.8
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCH------hHHHHHHHHHHh
Q 039715 449 SVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNE------VSWNAMISGYSM 522 (805)
Q Consensus 449 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~ 522 (805)
.++..|.+.-+..++...-+.....-+ ...|..||+......+.++|..+.++...+|. --+..+...+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 344455544444444433333222211 25789999999999999999999999987643 457788889999
Q ss_pred CCChHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 039715 523 HGLSAEVLKVFDLMQQRGW-RPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 600 (805)
.+...++..++.++.+.-. .|+ ..++.-++......|..+.-.++++-+. .+|+.-+ .-++....+.++...|
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv-slgl~et----gPl~~vhLrkdd~s~a 615 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV-SLGLSET----GPLWMVHLRKDDQSAA 615 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH-Hhhhhhc----ccceEEEeeccchhhh
Confidence 9999999999999987432 232 4467778888888899988888887766 3355432 4455667788888888
Q ss_pred HHHHHcC--CCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh--cCCC
Q 039715 601 AKLIEGI--PFQPSVMIWRALLGACIIHN--NVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS--KEPG 672 (805)
Q Consensus 601 ~~~~~~~--~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~ 672 (805)
.+.++.. ..+|.+.....+...+.++- +.+.+......+ . .|.+.|+..+|.+ +.||
T Consensus 616 ~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~i------------q---~f~k~g~~~~a~di~etpG 678 (1088)
T KOG4318|consen 616 QEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPI------------Q---KFEKLGSCVDAGDITETPG 678 (1088)
T ss_pred hhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchh------------H---HHHhcccccchhhccccCc
Confidence 8887644 34566555555555544321 223222211111 0 3888999999888 5555
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=1.5e-14 Score=148.51 Aligned_cols=248 Identities=13% Similarity=0.125 Sum_probs=110.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHH-HHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 039715 416 IVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSS-VLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGS 494 (805)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 494 (805)
...+.+.|++++|++++++......+|+...|.. +...+...++.+.|.+.++.+...+. .++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 3344445555555555543332221233333322 22233345555555555555555432 244556666666 67788
Q ss_pred HHHHHHHhhhcCC--CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 039715 495 ITDARLVFDMMND--WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG-WRPNNLTFVGVLSACSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 495 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 571 (805)
+++|.++++...+ ++...|..++..+...|+++++.++++++.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888877643 466778888888999999999999999987533 2345567777788889999999999999999
Q ss_pred HHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 572 VANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP--FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 572 ~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.+. .| +......++.++...|+.+++.++++... ...|+..|..+..+|...|+.++|+..++++++..|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 854 57 47788889999999999999888776551 1345668999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHhh
Q 039715 649 THVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 649 ~~~~l~~~~~~~g~~~~a~~ 668 (805)
....+++++...|+.++|.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHHHT----------
T ss_pred cccccccccccccccccccc
Confidence 99999999999999999976
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=3e-10 Score=113.14 Aligned_cols=465 Identities=12% Similarity=0.103 Sum_probs=214.1
Q ss_pred HHHHHHHHHhCCCchHHHHHhccCCC----CCcchH-HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHH---
Q 039715 94 TNVLLNVYVKLNRLPDATKLFDEMPE----RNTISF-VTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLK--- 165 (805)
Q Consensus 94 ~~~ll~~~~~~g~~~~A~~~f~~~~~----~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--- 165 (805)
...|.+-|.......+|+..++-+.+ ||.-.. -.+-..|.+..++.+|++.|+-....-...+..+-..+++
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 33455566666677788877776543 332211 1233456777888999998877666433334444444443
Q ss_pred -HHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh--------------ccccH-----HH
Q 039715 166 -VLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL--------------FNDCF-----EE 225 (805)
Q Consensus 166 -~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~--------------~~g~~-----~~ 225 (805)
.+.+.|.++.|...|+++.+.. |+..+.-.|+-.|..-|+-+..++.|.+| ...++ .+
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 3568899999999999988775 77666666666677778888888888876 01111 11
Q ss_pred HH--HHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHH-HHHHHHHcCCChHHHHHHHhh
Q 039715 226 AL--NFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAV-ALLDLYTKSGEISNARRIFEE 302 (805)
Q Consensus 226 A~--~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~ 302 (805)
++ +.++.|.+.. +. +.+.+.-.-..++..-+.|+-.... --+...-.....+.|..+
T Consensus 362 ai~nd~lk~~ek~~-ka----------------~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl--- 421 (840)
T KOG2003|consen 362 AIKNDHLKNMEKEN-KA----------------DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL--- 421 (840)
T ss_pred HHhhHHHHHHHHhh-hh----------------hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh---
Confidence 11 1222222211 00 1111111111122111222211000 000000000000000000
Q ss_pred CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhH--HHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHH
Q 039715 303 MPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFT--FVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFV 380 (805)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 380 (805)
--.-...|.++|+++.|+++++-+.+..-+.-... -.+.+.....-.++-.|.+.-+..+... .-+...
T Consensus 422 --------ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a 492 (840)
T KOG2003|consen 422 --------EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAA 492 (840)
T ss_pred --------hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHH
Confidence 00011223444444444444444433221111111 1111111222233444444433333221 111111
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHH---HHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhcc
Q 039715 381 SNALMDVYAKCGRMENSVELFAESPKRNHVTWNTM---IVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASL 457 (805)
Q Consensus 381 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 457 (805)
.+.-.+.-...|++++|.+.|.+....|...-.+| .-.+-..|+.++|++.|-++... +..+...+..+.+.|...
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELL 571 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHh
Confidence 11112222334555555555555444443322222 22344455555555555554321 122333444445555555
Q ss_pred CCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHH
Q 039715 458 AALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFD 534 (805)
Q Consensus 458 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 534 (805)
.+..+|.+++.+.... ++.|+.+.+-|.+.|-+.|+-..|.+..-.-- ..|+.+..-|..-|....-+++|+.+|+
T Consensus 572 ed~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred hCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555555444322 34455566666666666666666555443221 1244444445555555556666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcC
Q 039715 535 LMQQRGWRPNNLTFVGVLSAC-SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAG 595 (805)
Q Consensus 535 ~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 595 (805)
+..- +.|+..-|..++..| .+.|++..|..+++...++ ++.+......|+...+..|
T Consensus 651 kaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 651 KAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhcccc
Confidence 6554 566666665555544 3456666666666665543 3345555555555555544
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.9e-12 Score=135.95 Aligned_cols=266 Identities=15% Similarity=0.101 Sum_probs=207.1
Q ss_pred ChHHHHHHHhcCCCC--Chh-hHHHHHHHHHHcCChHHHHHHHHHHhhcC-C-CCChhhHHHHHHHHhccCCchhHHHHH
Q 039715 393 RMENSVELFAESPKR--NHV-TWNTMIVGYVQLGEVGKAMIMFSKMLEEQ-V-PATEVTYSSVLRACASLAALEPGMQVH 467 (805)
Q Consensus 393 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~a~~~~ 467 (805)
+..+|...|..++.. |+. ...-+..+|...+++++|.++|+.+.+.. . .-+...|+++|--+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886643 443 22446678889999999999999987642 1 12344777776543221 111122
Q ss_pred H-HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039715 468 C-LTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP 543 (805)
Q Consensus 468 ~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 543 (805)
. .+++. -+..+.+|-++.+.|.-+++.+.|++.|++..+. ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 22222 2556889999999999999999999999999855 456888888888999999999999999887 566
Q ss_pred CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHH
Q 039715 544 NNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRAL 619 (805)
Q Consensus 544 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l 619 (805)
... .|..+...|.+.++++.|.-.|+++. .+.| +.....+++..+-+.|+.|+|+++++++ ..+| |+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 543 77788889999999999999999988 6788 4567778889999999999999999977 2333 55444455
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 620 LGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 620 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+..+...+++++|+..+|++-++-|++...|..||.+|.+.|+.+.|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHH
Confidence 5667778999999999999999999999999999999999999999988
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3.6e-12 Score=133.88 Aligned_cols=198 Identities=10% Similarity=0.063 Sum_probs=150.9
Q ss_pred hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHH---HHHHHHH
Q 039715 445 VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWN---AMISGYS 521 (805)
Q Consensus 445 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~ 521 (805)
.||-.+.+.++.+++.+.|.+.|++.+..+ +....+|+.+..-+.....+|.|...|+.....|+..|| -++..|.
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 345555555555555555555555544433 225667777777777888899999999988877666555 4678899
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHH
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDK 599 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~e 599 (805)
+.++++.|.-.|++..+ +.|. .+....+...+.+.|+.|+|+++++++. .++| |+..--..+..+...++++|
T Consensus 501 Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred ccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHHHHHHhhcchHH
Confidence 99999999999999999 6774 5566777778889999999999999987 4566 44444456677888999999
Q ss_pred HHHHHHcCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 600 AAKLIEGIP-FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 600 A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
|+..++++. +.|+ ..++-.++..|.+.|+.+.|+.-|--+.+++|.-..
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999883 4565 567888889999999999999999999999996433
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.6e-11 Score=120.60 Aligned_cols=342 Identities=11% Similarity=0.078 Sum_probs=223.0
Q ss_pred HHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHH--HHHHHHhccCCchH
Q 039715 284 LDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFV--SVLQACATMEGLDL 361 (805)
Q Consensus 284 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~ 361 (805)
.-.+.+.|....|...|......-+.-|.+-+....-..+.+.+. .... |...|...+. .+..++......++
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~----~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS----ILVV-GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH----HHHh-cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 334455667777777776665544444444332221111111111 1111 1111111111 23334444555666
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 039715 362 GNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVP 441 (805)
Q Consensus 362 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 441 (805)
+.+-.......|++.+...-+....++-...++|+|+.+|+++.+.|+.-.
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl----------------------------- 296 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL----------------------------- 296 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc-----------------------------
Confidence 666666666666666555555555555555556666666655544322100
Q ss_pred CChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHH
Q 039715 442 ATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMIS 518 (805)
Q Consensus 442 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 518 (805)
-|..||+.+|-.-....++.---+....+ . .--+.+...+.+.|+-.++.++|...|++..+. -...|+.|..
T Consensus 297 ~dmdlySN~LYv~~~~skLs~LA~~v~~i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGH 372 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYLAQNVSNI--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGH 372 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHHh--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhH
Confidence 12223333332211111110000000011 1 223456677788888899999999999988754 4568999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC
Q 039715 519 GYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH 596 (805)
Q Consensus 519 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 596 (805)
-|....+...|++-++..++ +.| |-..|-++..+|.-.+...-|+-+|++.. .++| |...|.+|++.|.+.++
T Consensus 373 EyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 373 EYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred HHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhcc
Confidence 99999999999999999999 566 66799999999999999999999999987 5677 67899999999999999
Q ss_pred HHHHHHHHHcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------cCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 597 LDKAAKLIEGIPFQP--SVMIWRALLGACIIHNNVEIGRLSAQHILD-------FEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 597 ~~eA~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
++||++-|.+.-.-. +...+..|...|-+.++.++|...+++-++ .+|+-..+-.-|++-+.+.++|++|.
T Consensus 448 ~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 999999999773222 447889999999999999999999998887 44545556667899999999999997
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
.
T Consensus 528 ~ 528 (559)
T KOG1155|consen 528 Y 528 (559)
T ss_pred H
Confidence 6
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.4e-10 Score=117.74 Aligned_cols=253 Identities=15% Similarity=0.087 Sum_probs=200.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 039715 409 HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDM 488 (805)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 488 (805)
+...-.-..-+...+++.+..+++++..+.. ++....+..-|..+...|+-.+-..+-..+++. .|....+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 3334444556677899999999999998753 444444544555677777766666665555554 36677889999999
Q ss_pred HHhcCCHHHHHHHhhhcCCCC---HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHH
Q 039715 489 YAKCGSITDARLVFDMMNDWN---EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQG 564 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 564 (805)
|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. -| ....+..+.-=|...++.+.|
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHH
Confidence 999999999999999877544 458999999999999999999999888763 33 222344444458889999999
Q ss_pred HHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC--------CCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 039715 565 EAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP--------FQP-SVMIWRALLGACIIHNNVEIGRL 634 (805)
Q Consensus 565 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~ 634 (805)
.++|.+.. ++.| |+...+-++-+....+.+.+|..+|+..- .++ -..+|+.|+.+|++.+++++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99998877 7788 56778888878888899999999987541 112 23568999999999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 635 SAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 635 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+++++.+.|.++.+|..+|-+|...|+++.|..
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 9999999999999999999999999999999988
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=5.3e-11 Score=127.88 Aligned_cols=255 Identities=10% Similarity=-0.021 Sum_probs=160.4
Q ss_pred hccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHH
Q 039715 354 ATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKR---NHVTWNTMIVGYVQLGEVGKAMI 430 (805)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 430 (805)
...|+++.+...+..+.+................+...|++++|...++.+.+. +......+...|.+.|++++|.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 455555555555555554321111222223355666677777777777665432 45566677777778888888888
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---C
Q 039715 431 MFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---D 507 (805)
Q Consensus 431 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~ 507 (805)
++..+.+.+..++. .+..+- ..++..++....+..+.+...++++.++ .
T Consensus 209 ~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 209 ILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred HHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 88888776543221 111000 0011222222233334455555665554 2
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHH
Q 039715 508 WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTS 586 (805)
Q Consensus 508 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 586 (805)
.++..+..+..++...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...++ .| |+..+.+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~ 333 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWST 333 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHH
Confidence 36677777888888888888888888888773 4444211 222333457888888888887754 34 4566778
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
+..++.+.|++++|.+.|+++ ...|+...+..|...+...|+.++|...+++.+.+.
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888888888888888888866 456888888888888888888888888888887754
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=5.6e-10 Score=120.48 Aligned_cols=263 Identities=12% Similarity=0.049 Sum_probs=141.3
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCC----CcchHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 039715 76 MTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPER----NTISFVTTIQGYTVSSQFVEAVGLFSTLHRE 151 (805)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 151 (805)
..++..+...|+.|+.++|.+||..||..|+++.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 356777788899999999999999999999999998 88888653 4457899999999888877764
Q ss_pred CCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchh-----hHHHHHHHHHhcCCHHHHHHHHh-hhccccHHH
Q 039715 152 GHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAF-----VGTALIDAFSVCGCVEFARKVFD-GLFNDCFEE 225 (805)
Q Consensus 152 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~y~~~g~~~~A~~~~~-~~~~g~~~~ 225 (805)
.|.+.||..|+.+|...||+..-..+-+.+.......... .---++..-+.-+-..+|..+.. .+..|.++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6888899999999999998765222222222211111000 00011111111222233322211 113344555
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC
Q 039715 226 ALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK 305 (805)
Q Consensus 226 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 305 (805)
+++++..+....-. .++-.+|+-+..... -.+++........-.++..++.+++..-.-.|+++.|..++.+|.+
T Consensus 158 llkll~~~Pvsa~~---~p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWN---APFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHhhCCccccc---chHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 55554443221100 011112333332221 1222222222221135555666666555556666666666666655
Q ss_pred CCccc----HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCC
Q 039715 306 KDVIP----WSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEG 358 (805)
Q Consensus 306 ~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 358 (805)
++... |-.|+-+ .+....+..+++-|...|+.|+..|+..-+-.+...|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 43221 2233322 45555555555666666666666666555555555433
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.9e-09 Score=107.22 Aligned_cols=361 Identities=14% Similarity=0.105 Sum_probs=239.8
Q ss_pred CCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCccc-HHHHH
Q 039715 237 GFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIP-WSFMI 315 (805)
Q Consensus 237 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~-~~~li 315 (805)
+..-|.+-+-.......+.|....|...+...+.. -+..|.+-+....-..+.+.+..+-...+..+... --.+.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHH
Confidence 44555554444445556778888888877766533 23445555554444556666666655554432111 11244
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhcCC
Q 039715 316 ARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGL--LSDVFVSNALMDVYAKCGR 393 (805)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~ 393 (805)
.++-...+.++++.-.......|+.-+...-+....+.-...|+++|+.+|+.+.+... -.|..+|+.++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 56666678889998888888888765555555555556778899999999999999853 2356677666533222222
Q ss_pred hH-HHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHH
Q 039715 394 ME-NSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVK 472 (805)
Q Consensus 394 ~~-~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 472 (805)
+. -|..++ .+.+--+.|...+..-|.-.++.++|+..|++.++.+ +-....++.+..-|....+...|.+-++.+++
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 22 122222 2222234456666777777888899999999988753 22234566667778888888888888888887
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 039715 473 ANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFV 549 (805)
Q Consensus 473 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 549 (805)
.+ +.|-..|-.|.++|.-.+...-|+-.|++.. ..|...|.+|..+|.+.++.++|++.|.+....| ..+...+.
T Consensus 393 i~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 393 IN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred cC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 76 5577888888888888888888888888775 2378888888888888888888888888888765 34567788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhc---C-CCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 039715 550 GVLSACSNGGLLEQGEAYFKSMVANY---G-IEP-CIEHYTSMVSLLGRAGHLDKAAKLIE 605 (805)
Q Consensus 550 ~ll~a~~~~g~~~~a~~~~~~m~~~~---~-~~p-~~~~~~~li~~~~~~g~~~eA~~~~~ 605 (805)
.+...+.+.++..+|.++|+...+.. | +.| ......-|..-+-+.+++++|.....
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 88888888888888888888776542 1 222 12222334555667777777766543
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=2.3e-10 Score=123.70 Aligned_cols=291 Identities=10% Similarity=-0.032 Sum_probs=183.9
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHH
Q 039715 319 AQTDLSIDAVELFCRMRQAFVAPNQF-TFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENS 397 (805)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 397 (805)
...|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+...+..+.+....+...+.-.....+...|++++|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4468888888888776654 34432 23333455666778888888777776654223233444456666777777777
Q ss_pred HHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcC
Q 039715 398 VELFAESPKR---NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKAN 474 (805)
Q Consensus 398 ~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 474 (805)
...++.+.+. +...+..+...|.+.|++++|.+++.++.+.++.+.. .+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence 7777665432 4455666677777777777777777777665432211 1110000
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH--H
Q 039715 475 YDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTF--V 549 (805)
Q Consensus 475 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~ 549 (805)
..+..+++.-......+...+.++..+. .+...+..++..+...|++++|.+++++..+. .||.... .
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0111111111122233444555555553 37888888889999999999999999999884 4555421 1
Q ss_pred HH-HHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHHH
Q 039715 550 GV-LSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEG---IPFQPSVMIWRALLGACII 625 (805)
Q Consensus 550 ~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~---~~~~p~~~~~~~l~~~~~~ 625 (805)
.+ .......++.+.+.+.++...+...-.|+.....+++.++.+.|++++|.+.|++ ....||...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 11 1123345778888888888775432223225667888889999999999999983 2457888888888888999
Q ss_pred cCCHHHHHHHHHHHhc
Q 039715 626 HNNVEIGRLSAQHILD 641 (805)
Q Consensus 626 ~g~~~~a~~~~~~~~~ 641 (805)
.|+.++|.+++++.++
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999888765
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=3.5e-08 Score=99.62 Aligned_cols=423 Identities=12% Similarity=0.080 Sum_probs=254.2
Q ss_pred hhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC--CCcc-hHHHHHHHHHcCCChhHHH
Q 039715 66 CIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE--RNTI-SFVTTIQGYTVSSQFVEAV 142 (805)
Q Consensus 66 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~ 142 (805)
-..++++..|+++|...+... ..++.+|-.-+.+=.++..+..|+.+||+... |.+. -|-.-+-.--.-|+...|.
T Consensus 83 Eesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHH
Confidence 345678888999999888766 45777888888888899999999999998543 3332 4655555556678999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhcccc
Q 039715 143 GLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDC 222 (805)
Q Consensus 143 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~ 222 (805)
++|++-.+ ..|+...+.+.++-=.+...++.|+.+++..+-. +|++..|-.-...--++|.+..|+++|+
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vye------ 231 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYE------ 231 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHH------
Confidence 99999877 6899999999999999999999999999887754 5899999888888889999999999988
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCc-HhHHHHHHHHHHcCCChHHHHHHH-
Q 039715 223 FEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMD-LYVAVALLDLYTKSGEISNARRIF- 300 (805)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~f- 300 (805)
.|++.|..=.. +...|.+...-=.++..++.|+-++...+..-+... ...+..+...=-+.|+........
T Consensus 232 --rAie~~~~d~~-----~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 232 --RAIEFLGDDEE-----AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred --HHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 44444432100 112233333333355667778888888777643221 334444544444445543332222
Q ss_pred --hh-----CCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh-------HHHHHHHHH---hccCCch
Q 039715 301 --EE-----MPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQF-------TFVSVLQAC---ATMEGLD 360 (805)
Q Consensus 301 --~~-----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~~~~~ 360 (805)
.+ +... |-.+|--.++.-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+++
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11 1122 3445655666666667777777777766653 344211 111111111 2344555
Q ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 039715 361 LGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQV 440 (805)
Q Consensus 361 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 440 (805)
...++|+..++. ++...+++.-+=-+|+ .--.++.+...|.+++-..+ |.
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA---------------------------~feIRq~~l~~ARkiLG~AI--G~ 433 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYA---------------------------QFEIRQLNLTGARKILGNAI--GK 433 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHH---------------------------HHHHHHcccHHHHHHHHHHh--cc
Confidence 555555555551 2333344433333332 22333444555555554443 34
Q ss_pred CCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC-C----CHhHHHH
Q 039715 441 PATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND-W----NEVSWNA 515 (805)
Q Consensus 441 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~----~~~~~~~ 515 (805)
-|-..+|...|..-.++++++..+.+++..++.+ +.+..+|.-....-...|+.+.|..+|+-... | ....|-+
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 4555555555555555555555555555555554 33455555555555555666666666655442 2 2345555
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
.|.--...|.++.|..+++++++
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHH
Confidence 55555556666666666666665
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=1.1e-10 Score=126.28 Aligned_cols=282 Identities=9% Similarity=0.041 Sum_probs=194.3
Q ss_pred HcCCChHHHHHHHhhCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--HHHHHHHHHhccCCchHH
Q 039715 288 TKSGEISNARRIFEEMPKKDVI---PWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQF--TFVSVLQACATMEGLDLG 362 (805)
Q Consensus 288 ~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 362 (805)
...|+++.|.+.+.+..+.... .+-.....+.+.|+++.|...|.+..+. .|+.. .-......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4589999999999887654222 2444456778889999999999998764 35543 333346778889999999
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHH----HHHHHHcCChHHHHHHHHHH
Q 039715 363 NQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRN---HVTWNTM----IVGYVQLGEVGKAMIMFSKM 435 (805)
Q Consensus 363 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~l----i~~~~~~g~~~~A~~~~~~m 435 (805)
...++.+.+.. +.+..+...+...|.+.|++++|.+.++.+.+.. ...+..+ ..++...+..+++.+.+.++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999987 5567889999999999999999999998877542 2222111 11112222222222233333
Q ss_pred hhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC--CHhH-
Q 039715 436 LEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW--NEVS- 512 (805)
Q Consensus 436 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~- 512 (805)
.... | + ..+.+...+..++..+...|+.++|.+++++..+. |...
T Consensus 252 ~~~~--p-----------------------------~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~ 299 (409)
T TIGR00540 252 WKNQ--P-----------------------------R-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI 299 (409)
T ss_pred HHHC--C-----------------------------H-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc
Confidence 2211 1 0 01235666777777788888888888888777643 2221
Q ss_pred --HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHH
Q 039715 513 --WNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL---TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSM 587 (805)
Q Consensus 513 --~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 587 (805)
+..........++.+.+++.+++..+ ..|+.. ...++...|.+.|++++|.++|+.... +...|+.+.+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHH
Confidence 12222233445778888899988887 466655 445777888999999999999995331 2567998888899
Q ss_pred HHHHHhcCCHHHHHHHHHcC
Q 039715 588 VSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~ 607 (805)
..++.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999998753
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.41 E-value=1.1e-10 Score=125.31 Aligned_cols=268 Identities=10% Similarity=0.060 Sum_probs=193.4
Q ss_pred cCChHHHHHHHhcCCCC--Chh-hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHH--HHHHHHhccCCchhHHH
Q 039715 391 CGRMENSVELFAESPKR--NHV-TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYS--SVLRACASLAALEPGMQ 465 (805)
Q Consensus 391 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 465 (805)
.|+++.|++.+...++. ++. .+-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777665443 122 2323334446788888888888888653 45543332 33456677888888888
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCC---H--------hHHHHHHHHHHhCCChHHHHHHHH
Q 039715 466 VHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWN---E--------VSWNAMISGYSMHGLSAEVLKVFD 534 (805)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~~ 534 (805)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.. . ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 5567888888999999999999998888887431 1 133344444444455566666777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-C
Q 039715 535 LMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-S 612 (805)
Q Consensus 535 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~ 612 (805)
.+.+. .+.+......+..++...|+.++|..+++...+ ..|+.... ++......|+.+++.+.+++. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 344677888889999999999999999988874 34555322 223333569999999999876 3345 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+..+.+++..|...|++++|.+.++++++.+|++ ..+..|+.++.+.|+.++|.+
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHH
Confidence 5678899999999999999999999999999965 557899999999999999976
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=9.1e-10 Score=111.40 Aligned_cols=207 Identities=14% Similarity=0.122 Sum_probs=162.6
Q ss_pred ccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHH
Q 039715 456 SLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKV 532 (805)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 532 (805)
-.|+.-.+.+-++.+++....+ ...|--+..+|....+.++-.+.|++... .|..+|.--...+.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 3467777777777777765333 23366666778888888888888887763 3566777777777778889999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC
Q 039715 533 FDLMQQRGWRPNN-LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ 610 (805)
Q Consensus 533 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~ 610 (805)
|++.+. +.|+. ..|..+.-+..+.+.++++...|+..+++ ++-.++.|+-....+..+++++.|.+.|+.. .++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 67754 47777777778889999999999999876 3446788999999999999999999999854 333
Q ss_pred CC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 611 PS---------VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 611 p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|+ +.+..+++-.-. .+++.+|+.+++++++++|....+|..|+.+-.++|+.++|.+
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33 334444444433 3999999999999999999999999999999999999999987
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.5e-08 Score=102.20 Aligned_cols=440 Identities=14% Similarity=0.114 Sum_probs=296.2
Q ss_pred hhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCC
Q 039715 176 CPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGL 255 (805)
Q Consensus 176 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 255 (805)
|+.+++..+... ..+...|-.-+.+-.++..+..|+.++++ |+.++-+ .|..=|. -+-.=-..
T Consensus 92 ARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dR--------Avt~lPR-------VdqlWyK-Y~ymEE~L 154 (677)
T KOG1915|consen 92 ARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDR--------AVTILPR-------VDQLWYK-YIYMEEML 154 (677)
T ss_pred HHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHH--------HHHhcch-------HHHHHHH-HHHHHHHh
Confidence 333444433333 35566666677777777778877777773 2322211 1111111 11111235
Q ss_pred CCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCC--CCCcccHHHHHHHHHhCCChhHHHHHHHH
Q 039715 256 DTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMP--KKDVIPWSFMIARYAQTDLSIDAVELFCR 333 (805)
Q Consensus 256 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (805)
|++..|+++|+.-.+- .|+...|++.|+.=.+-..++.|+.++++.. .|++..|---..-=.++|+...|..+|..
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 7778888888877654 7888888888888888888888888888754 57777787777777778888888888877
Q ss_pred HHHCCCCCChhH----HHHHHHHHhccCCchHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCChHHHHHH-------
Q 039715 334 MRQAFVAPNQFT----FVSVLQACATMEGLDLGNQIHSLVVRVGLLSD--VFVSNALMDVYAKCGRMENSVEL------- 400 (805)
Q Consensus 334 m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~------- 400 (805)
..+. -.|... |++...-=.+...++.|.-+|...+..= +.+ ...+..+...--+-|+...-...
T Consensus 233 Aie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 233 AIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 6653 122332 3333333345677888999999888753 222 45566666655566664433332
Q ss_pred -HhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-------hHHHH---HHHHhccCCchhHHHH
Q 039715 401 -FAESPKR---NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-------TYSSV---LRACASLAALEPGMQV 466 (805)
Q Consensus 401 -f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~l---l~a~~~~~~~~~a~~~ 466 (805)
++.+... |-.+|--.+..--..|+.+...++|++.+.. ++|-.. .|.-+ +-.-....+.+.++++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2223332 5567888888888889999999999999865 455321 12211 2222356788999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHH----hcCCHHHHHHHhhhcC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 039715 467 HCLTVKANYDMDVVVANALIDMYA----KCGSITDARLVFDMMN--DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG 540 (805)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 540 (805)
++..++. ++...+++.-+=-+|+ ++.++..|.+++.... .|-.-++-..|..-.+.+.++.+..++++.++
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-- 465 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-- 465 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 9998883 4555566665555554 6889999999998876 45667788888888899999999999999999
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHH
Q 039715 541 WRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRA 618 (805)
Q Consensus 541 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ 618 (805)
..| |..++......-...|+.+.|+.+|.-+.....++--...|.+.|+.=...|.++.|..+++++ ...+...+|-+
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis 545 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS 545 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence 456 5567777777677889999999999998865333334567888888888999999999999877 22345558887
Q ss_pred HHHHHH-----HcC-----------CHHHHHHHHHHHhc
Q 039715 619 LLGACI-----IHN-----------NVEIGRLSAQHILD 641 (805)
Q Consensus 619 l~~~~~-----~~g-----------~~~~a~~~~~~~~~ 641 (805)
+..--. ..| +...|..+|+++..
T Consensus 546 FA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 546 FAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 765433 233 45677777777765
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.37 E-value=2.6e-12 Score=131.81 Aligned_cols=252 Identities=14% Similarity=0.159 Sum_probs=69.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHH-HHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 039715 315 IARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVL-QACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGR 393 (805)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 393 (805)
...+.+.|++++|++++++.......|+...|..++ ..+...++.+.|...++.+.+.+. .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 344445555555555554333222123333333322 233445556666666666655442 234445555555 46666
Q ss_pred hHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcC-CCCChhhHHHHHHHHhccCCchhHHHHHHHH
Q 039715 394 MENSVELFAESPK--RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQ-VPATEVTYSSVLRACASLAALEPGMQVHCLT 470 (805)
Q Consensus 394 ~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 470 (805)
+++|.++++..-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6776666655422 344556666667777777777777777765422 1233334444455555555555555555555
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHH
Q 039715 471 VKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNL 546 (805)
Q Consensus 471 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ 546 (805)
++.. |.|..+.+.++.++...|+.+++.+++.... ..|...|..+..+|...|++++|+..|++.... .| |..
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~ 249 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPL 249 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccc
Confidence 5544 2244555555555555555555444444332 234445555555555555666666666555552 23 344
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m 571 (805)
....+..++...|+.++|.++.+++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4555555555555555555555443
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.4e-09 Score=104.64 Aligned_cols=217 Identities=14% Similarity=0.137 Sum_probs=129.3
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCc---cHHHHHHHHHHHHhcCChHH
Q 039715 320 QTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLS---DVFVSNALMDVYAKCGRMEN 396 (805)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~ 396 (805)
-+.++++|+++|-+|.+.. +-+..+-.++.+.+.+.|..+.|+.+|+.+.++.--+ -....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3567888999999988742 1233344567777888899999999998888742111 12345567788889999999
Q ss_pred HHHHHhcCCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhh----HHHHHHHHhccCCchhHHHHHHH
Q 039715 397 SVELFAESPKRNH---VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVT----YSSVLRACASLAALEPGMQVHCL 469 (805)
Q Consensus 397 A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~~~~~ 469 (805)
|+.+|..+.+... .....|+..|-+..++++|++.-+++...+-.+..+- |.-+........+++.|...+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999988776433 3566678889999999999999888887665554432 22333333334445555555555
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHh----HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 470 TVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEV----SWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 470 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
..+.+ +..+...-.+.+.+...|+++.|.+.++.+.+.|.. ....|..+|.+.|+.++.+..+.++.+
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44443 223333334444444444444444444444433322 233334444444444444444444444
No 53
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.6e-06 Score=95.33 Aligned_cols=139 Identities=14% Similarity=0.251 Sum_probs=113.5
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMV 588 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 588 (805)
....|..+..+-.+.|...+|++-|-+. -|+..|..++.++++.|.+++-.+++...+++ .-+|.++ +.|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3457999999999999999999877543 35678999999999999999999999777655 5566554 5799
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 589 SLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
-+|++.+++.|-++++. .||..-....+.-|...|.++.|.-+|. +.+.|..|+..+...|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988873 4788888888999999999999988886 44567777777777777777665
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=7e-09 Score=107.25 Aligned_cols=493 Identities=12% Similarity=0.041 Sum_probs=264.2
Q ss_pred cCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhc--cCCCCCcchHHHH
Q 039715 51 VSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFD--EMPERNTISFVTT 128 (805)
Q Consensus 51 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~--~~~~~~~~~~~~l 128 (805)
.+..+..-+..+++-+..+..+..|.-+-..+...+..|+..-| +..+|.-.|.++.|..+.. .+.+.|..+....
T Consensus 11 ~d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~--~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~ 88 (611)
T KOG1173|consen 11 ADELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYW--LAQVLYLGRQYERAAHLITTYKLEKRDIACRYLA 88 (611)
T ss_pred cccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHH--HHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 44566777888999888888999999888888777755554444 7778888888888877765 4567888888888
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCH
Q 039715 129 IQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCV 208 (805)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 208 (805)
...+.+..++++|..++..-. +.-+.+.|-.-=. +..-..+.+...+..-.+.++ +-.--..|......
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCcccccccccchhce------eeeeeehhhhhccH
Confidence 899999999999998887331 1111111110000 000011111111100001110 00001122223333
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHH-
Q 039715 209 EFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLY- 287 (805)
Q Consensus 209 ~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y- 287 (805)
++|+.-|.+...-+ -...+-|..|....+---...+-.+.. ++.+. . ...+......+...+
T Consensus 158 ~~ar~~Y~~Al~~D-~~c~Ea~~~lvs~~mlt~~Ee~~ll~~-------l~~a~-----~----~~ed~e~l~~lyel~~ 220 (611)
T KOG1173|consen 158 EEARDKYKEALLAD-AKCFEAFEKLVSAHMLTAQEEFELLES-------LDLAM-----L----TKEDVERLEILYELKL 220 (611)
T ss_pred HHHHHHHHHHHhcc-hhhHHHHHHHHHHHhcchhHHHHHHhc-------ccHHh-----h----hhhHHHHHHHHHHhhh
Confidence 44443333220000 001111111211111000000110000 00000 0 000111111111111
Q ss_pred HcCCChHHHHHHH--hhC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHH
Q 039715 288 TKSGEISNARRIF--EEM--PKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGN 363 (805)
Q Consensus 288 ~~~g~~~~A~~~f--~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 363 (805)
++.-+- +....- ..+ .+.++...-.-.+-+...+++.+.+++++...+. .++....+..=|.++...|+..+-.
T Consensus 221 ~k~~n~-~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf 298 (611)
T KOG1173|consen 221 CKNRNE-ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLF 298 (611)
T ss_pred hhhccc-cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHH
Confidence 000000 000000 011 1234444555566677788888888888888765 3445555555556667777766666
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCC
Q 039715 364 QIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRN---HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQV 440 (805)
Q Consensus 364 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 440 (805)
.+-..+++. .+....+|-++.--|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+.=
T Consensus 299 ~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~- 376 (611)
T KOG1173|consen 299 LLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM- 376 (611)
T ss_pred HHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-
Confidence 665555554 35667788888888888899999999998754433 3478889999999999999988887765421
Q ss_pred CCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC----------CH
Q 039715 441 PATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW----------NE 510 (805)
Q Consensus 441 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----------~~ 510 (805)
+-...-+..+.--|.+.++++.|.+.|.++.... |.|+.+.+-+.-+....+.+.+|...|+....+ -.
T Consensus 377 ~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 377 PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 1111122233445666777777777777776654 556667776666666667777777777655411 11
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEH 583 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 583 (805)
.+|+.|+.+|.+.+++++|+..|++.+.. .| |..++.++.-.+...|+++.|...|.+.. .+.|+-..
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~ 524 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIF 524 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHH
Confidence 23555555666666666666666665552 33 34455555555555666666666665554 45555433
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.6e-08 Score=97.14 Aligned_cols=369 Identities=12% Similarity=0.044 Sum_probs=247.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHh-CCC--hhH-------------HHHHHHHHHHC------
Q 039715 280 AVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQ-TDL--SID-------------AVELFCRMRQA------ 337 (805)
Q Consensus 280 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~-~g~--~~~-------------A~~~~~~m~~~------ 337 (805)
-...+..|...++-+.|.....+.+..-...-+.|+.+..+ .|- .++ |++.+.-..+.
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e 179 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNE 179 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchh
Confidence 33455566666777777777777766544444444433322 221 111 12222222222
Q ss_pred ---------CCCCChhHHHHHHHHHhc--cCCchHHHHHHHHHHH-hCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC
Q 039715 338 ---------FVAPNQFTFVSVLQACAT--MEGLDLGNQIHSLVVR-VGLLSDVFVSNALMDVYAKCGRMENSVELFAESP 405 (805)
Q Consensus 338 ---------g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 405 (805)
.+.|+..+....+.+++. .++-..+.+.+-.+.+ .-++.|+.....+.+.|...|+.++|...|++..
T Consensus 180 ~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 180 INSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred hhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 234445555555555443 3444444444444443 3467788999999999999999999999999866
Q ss_pred CCChhhHHHH---HHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHH
Q 039715 406 KRNHVTWNTM---IVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVA 482 (805)
Q Consensus 406 ~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 482 (805)
.-|+.+..+| .-.+.+.|+++....+...+.... +-....|..-+......++.+.|..+-++.++.+ +.+...+
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~al 337 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEAL 337 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHH
Confidence 5555443333 334567888888888877775432 1111222222333345567777777777777655 3344555
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcC--C-CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-c
Q 039715 483 NALIDMYAKCGSITDARLVFDMMN--D-WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVL-SACS-N 557 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~ 557 (805)
-.-..++...|+.++|.-.|+... . -+..+|..|+..|...|+..||.-+-+..... +..+..+...+. ..|. .
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccC
Confidence 555667778899999999998765 3 38899999999999999999999988876653 333444554442 3333 2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
.-.-++|..++++.. .+.|+ ......+..++.+.|+.++++.++++. ...||....+.|+...+..+.+++|...
T Consensus 417 p~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred chhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 334578999988766 56786 456778889999999999999999965 5679999999999999999999999999
Q ss_pred HHHHhccCCCCcchHHHHH
Q 039715 636 AQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 636 ~~~~~~~~p~~~~~~~~l~ 654 (805)
|..++.++|++..+.-.|-
T Consensus 494 y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 494 YYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHhcCccchHHHHHHH
Confidence 9999999999877766553
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=6.3e-09 Score=105.47 Aligned_cols=398 Identities=12% Similarity=0.041 Sum_probs=250.9
Q ss_pred ccccHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCc-HhHHHHHHHHHHcCCChHHH
Q 039715 219 FNDCFEEALNFFSQMRAVGFKPN-NFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMD-LYVAVALLDLYTKSGEISNA 296 (805)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A 296 (805)
.+|.|++|++.+.+.++ ..|| ..-|...-.+|...|+++...+.-...++.. |+ +..+..-..++-..|++++|
T Consensus 127 ~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHHHH
Confidence 45666677777777766 4677 6778888888889999999888877777653 33 33444555667777887776
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHH--------HHHHH-C--CCCCChhHHHHHHHHHhccCCchHHHHH
Q 039715 297 RRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELF--------CRMRQ-A--FVAPNQFTFVSVLQACATMEGLDLGNQI 365 (805)
Q Consensus 297 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~-~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 365 (805)
+.= ++-..+..+|....-..-+.+++ .+-.+ . .+.|......+.+..+...-..
T Consensus 203 l~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~------ 267 (606)
T KOG0547|consen 203 LFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP------ 267 (606)
T ss_pred HHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc------
Confidence 531 12222333332222222222222 22222 1 1345555444444443211000
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHhc-CChHHHHHHHhc-------CCCCC---------hhhHHHHHHHHHHcCChHHH
Q 039715 366 HSLVVRVGLLSDVFVSNALMDVYAKC-GRMENSVELFAE-------SPKRN---------HVTWNTMIVGYVQLGEVGKA 428 (805)
Q Consensus 366 ~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~-------~~~~~---------~~~~~~li~~~~~~g~~~~A 428 (805)
.+...+-..|...-..+=..|... ..+..|...+.+ ....+ ..+.+.-..-+.-.|+.-.|
T Consensus 268 --~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 268 --LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred --cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 000000011111111111111111 122333322221 11111 11222222234457888999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC
Q 039715 429 MIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW 508 (805)
Q Consensus 429 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 508 (805)
...|+..+.....++.. |..+...|....+.++..+.|....+.+ +-++.+|..-..++.-.+++++|..-|++...-
T Consensus 346 ~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999998865444432 7777788999999999999999999887 446777888888888899999999999998754
Q ss_pred ---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-----
Q 039715 509 ---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----- 580 (805)
Q Consensus 509 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----- 580 (805)
++..|-.+..+.-+.++++++...|++..+. ++.-+..|+.....+...+++++|.+.|+..+ .+.|+
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~LE~~~~~~~ 499 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---ELEPREHLII 499 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---hhcccccccc
Confidence 5567777777777888999999999999985 33345688888899999999999999999987 34554
Q ss_pred ----hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 581 ----IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 581 ----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
+.+..+++-.-- .+++.+|.+++++. .+.|. ...+.+|...-.++|+.++|+++|++...+.-
T Consensus 500 v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 122222222222 38999999999976 45554 45799999999999999999999999887644
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=2.3e-08 Score=107.14 Aligned_cols=585 Identities=12% Similarity=0.061 Sum_probs=337.6
Q ss_pred CChHHHHHHHHHHHH-cCCCCCcchHHHHHHHHHh--CCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHH
Q 039715 70 DDLQTAMTIHCQVLK-KGNCLDLFATNVLLNVYVK--LNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFS 146 (805)
Q Consensus 70 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~--~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 146 (805)
....+|.......+. .+..+....-..++.+-.. +|...+|.+-|-.-. ..+-++........+...+|....+
T Consensus 18 ~~~~~A~~~l~~~L~~~~~~~~~~~ea~~~lakl~~a~~~e~~ai~~~~~s~---i~~~~~~~~~~~~~~~l~Ea~~il~ 94 (799)
T KOG4162|consen 18 NGLSEAIPELHRALHKHNSSKSFVCEAMLILAKLDYACGEERKAIRNFSASG---IDNQYSENLPLLDLRLLAEAEAILR 94 (799)
T ss_pred CchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhhhcccHHHHHHHHHHHhh---cccccccccchhhhhhHHHHHHHHh
Confidence 345566655554444 4444444444445544444 677777777765542 2222223355566777788877765
Q ss_pred HHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCC--------------------------CCch-h------
Q 039715 147 TLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGH--------------------------DSNA-F------ 193 (805)
Q Consensus 147 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--------------------------~~~~-~------ 193 (805)
+-......+...+- ...-...|+.+.|..+|+.+-..++ .|.. .
T Consensus 95 ~glsle~ee~~~~s---~~~~~qr~~~e~al~vFe~~~i~~~~~~~e~~i~~~s~~s~~~~s~~~~a~~p~~~~s~~~~~ 171 (799)
T KOG4162|consen 95 EGLSLEYEEARALS---GRLEYQRGNDEAALRVFEGIDILAITYLQELEIVQNSNSSLRQRSKASFAIEPSTVMSAHGAI 171 (799)
T ss_pred hhcccchhhhhhhh---hhHHHhhcCcHHHHHHhcccchhHHHHHHHHHHHhccCccccCCCccccccCCCcHHHHHHHH
Confidence 54433233333222 3334577889999998865432111 0110 0
Q ss_pred hHHHHHHHHH----hcCCHHHHHHHHhhh--------------------------------------ccccHHHHHHHHH
Q 039715 194 VGTALIDAFS----VCGCVEFARKVFDGL--------------------------------------FNDCFEEALNFFS 231 (805)
Q Consensus 194 ~~~~li~~y~----~~g~~~~A~~~~~~~--------------------------------------~~g~~~~A~~~~~ 231 (805)
.-..++..+. +-|++.+|.+-...+ ..+..++++.-+.
T Consensus 172 Le~~l~~lk~k~L~~~~~iqea~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~~~i~s~~ 251 (799)
T KOG4162|consen 172 LEAELIKLKAKSLKRLGRIQEAAEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPKEAIKSYR 251 (799)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCchHHHHhhh
Confidence 1111222222 123444443333222 2333445555555
Q ss_pred HHHHCCCCCChhhHHHHHHHhh---CCCCHHHH-------------------HHHH----HHHHHhCCCCcHhHHHHHHH
Q 039715 232 QMRAVGFKPNNFTFAFVLKACL---GLDTIRVA-------------------KSAH----GCALKTCYEMDLYVAVALLD 285 (805)
Q Consensus 232 ~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a-------------------~~~~----~~~~~~g~~~~~~~~~~li~ 285 (805)
.....+...+..++..+...+. ..++.+.. .... .++....+..|..+|..|.-
T Consensus 252 ~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~ 331 (799)
T KOG4162|consen 252 RALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTF 331 (799)
T ss_pred HHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 5444444445545444433222 23333333 2111 11222235668888999999
Q ss_pred HHHcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHH-HH-hccCCch
Q 039715 286 LYTKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQ-AC-ATMEGLD 360 (805)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~-~~~~~~~ 360 (805)
...++|+++.+.+.|++...- ....|+.+...|...|.-..|+.+++.-......|+..+.-.+.. .| .+.+.++
T Consensus 332 al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence 999999999999999987542 344599999999999999999999988766543455444433333 34 4567788
Q ss_pred HHHHHHHHHHHhC--C--CccHHHHHHHHHHHHhcC-----------ChHHHHHHHhcCCC---CChhhHHHHHHHHHHc
Q 039715 361 LGNQIHSLVVRVG--L--LSDVFVSNALMDVYAKCG-----------RMENSVELFAESPK---RNHVTWNTMIVGYVQL 422 (805)
Q Consensus 361 ~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~~~g-----------~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 422 (805)
++..+-.+++... . ......+-.+.-+|...- ...++...+++..+ .|+..-.-+.--|+..
T Consensus 412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQ 491 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 8887777777621 1 122344444544554321 12344555555432 2332222333456677
Q ss_pred CChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 039715 423 GEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKA-NYDMDVVVANALIDMYAKCGSITDARLV 501 (805)
Q Consensus 423 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~ 501 (805)
++.+.|++..++....+-.-+...+..+.-.+...+++..|..+.+..... |. |-.....-+..-..-++.++|...
T Consensus 492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHH
Confidence 888999999999888766777778887777888888888888887766542 21 100000111111123444444333
Q ss_pred hhhcCC-------------------------------CCHh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC--CH--
Q 039715 502 FDMMND-------------------------------WNEV-SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP--NN-- 545 (805)
Q Consensus 502 ~~~~~~-------------------------------~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~-- 545 (805)
...+.. .|.. ++..+ .+... -+.+.+..-.. +...-+.| +.
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK-LPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccccc-cCcccccCCCCchH
Confidence 222210 0111 11111 11111 11111100000 11111222 21
Q ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHH
Q 039715 546 ----LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRA 618 (805)
Q Consensus 546 ----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ 618 (805)
..+......+...+..++|...+.+.. ++.| ....|.-.+..+...|..+||.+.|... .+.|+ +.+..+
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A 723 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence 123445556788899999987777765 4556 5667888888999999999999988754 56776 458899
Q ss_pred HHHHHHHcCCHHHHHH--HHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 619 LLGACIIHNNVEIGRL--SAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...+.+.|+-..|.. ++..+++++|.++.+|..||.++.+.|+.++|.+
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 9999999998888877 9999999999999999999999999999999988
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=5.6e-10 Score=111.35 Aligned_cols=191 Identities=14% Similarity=0.032 Sum_probs=158.5
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
.....+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456778888999999999999999988763 356788889999999999999999999998853 234557777888
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEI 631 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 631 (805)
.+...|++++|...++.+............+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998854222224567778889999999999999999866 2334 45678888899999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 632 GRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 632 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|...++++++..|+++..+..++.++...|++++|..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999989888888899999999999999865
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=9.2e-10 Score=117.48 Aligned_cols=224 Identities=15% Similarity=0.105 Sum_probs=168.1
Q ss_pred hhHHHHHHHHhccCCchhHHHHHHHHHHc-----CC-CCcH-hHHHHHHHHHHhcCCHHHHHHHhhhcCC--------C-
Q 039715 445 VTYSSVLRACASLAALEPGMQVHCLTVKA-----NY-DMDV-VVANALIDMYAKCGSITDARLVFDMMND--------W- 508 (805)
Q Consensus 445 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~- 508 (805)
.|...+...|...|+++.|...+...++. |. .+.+ ...+.+..+|...+++++|..+|+++.. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36666777888888888888888776654 21 1222 2344577889999999999999888752 1
Q ss_pred --CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCC-CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcC--C
Q 039715 509 --NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR-----GWRP-NNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYG--I 577 (805)
Q Consensus 509 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 577 (805)
-..+++.|...|...|++++|...+++..+. |..+ ... -++.+...|...+.+++|..+++...+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2447888888999999999998888877542 2222 222 466677779999999999999998876654 2
Q ss_pred CCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC-------C--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-
Q 039715 578 EPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI-------P--FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDF- 642 (805)
Q Consensus 578 ~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~-------~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 642 (805)
.++ ..+++.|..+|...|+++||+++++++ . ..+. ....+.|..+|.+.+++++|.+.|++...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 368999999999999999999999866 1 1232 346788889999999999999988877653
Q ss_pred ---CCCC---cchHHHHHHHHHhcCChHHHhh
Q 039715 643 ---EPED---EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 643 ---~p~~---~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.|++ ..+|..|+-+|..+|++++|.+
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 4544 4567889999999999999977
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.26 E-value=3.2e-06 Score=89.02 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=96.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCC
Q 039715 59 YATSLQSCIQNDDLQTAMTIHCQVLKKG-NCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQ 137 (805)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 137 (805)
|-.-+.....++++..-+..|...+..- +.....+|.-.+......|-++-+.+++.+-.+-++..-+--|.-++..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence 3344444455666666666666665542 233445566666666666666677777776655445555666777777777
Q ss_pred hhHHHHHHHHHHhCC------CCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCC--CCc--hhhHHHHHHHHHhcCC
Q 039715 138 FVEAVGLFSTLHREG------HELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGH--DSN--AFVGTALIDAFSVCGC 207 (805)
Q Consensus 138 ~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~y~~~g~ 207 (805)
+++|.+.+....... -+-+-..|.-+-...++..+.-....+ +.+++.|+ -+| ...|++|.+-|.+.|+
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 777777777765421 112233455555544444433333222 23333343 233 3689999999999999
Q ss_pred HHHHHHHHhhh
Q 039715 208 VEFARKVFDGL 218 (805)
Q Consensus 208 ~~~A~~~~~~~ 218 (805)
++.|+.+|++.
T Consensus 264 ~ekarDvyeea 274 (835)
T KOG2047|consen 264 FEKARDVYEEA 274 (835)
T ss_pred hHHHHHHHHHH
Confidence 99999999876
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=1.6e-08 Score=100.59 Aligned_cols=282 Identities=13% Similarity=0.054 Sum_probs=171.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 039715 321 TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVEL 400 (805)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 400 (805)
.|++.+|.++..+-.+.+-.| ...|.....+....|+.+.+-.++.++.+..-.++..+.-+........|+++.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 366666666666655544332 2334445555667777777777777777654456666677777777778888877776
Q ss_pred Hhc---CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-------hHHHHHHHHhccCCchhHHHHHHHH
Q 039715 401 FAE---SPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-------TYSSVLRACASLAALEPGMQVHCLT 470 (805)
Q Consensus 401 f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~~~~~~a~~~~~~~ 470 (805)
.++ |..+++.........|.+.|++.+...++.+|.+.|.--|.. ++..+++-+...+..+.-.+.++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 655 444577777888888888888888888888888877654432 3444444444433333333333322
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 039715 471 VKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVG 550 (805)
Q Consensus 471 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 550 (805)
.+. .. .++..-.+++.-+.+.|+.++|.++..+..+.+..|.- .
T Consensus 256 pr~-lr-------------------------------~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~ 299 (400)
T COG3071 256 PRK-LR-------------------------------NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----C 299 (400)
T ss_pred cHH-hh-------------------------------cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----H
Confidence 211 11 23444444555555566666666666666665555541 1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCCH
Q 039715 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGACIIHNNV 629 (805)
Q Consensus 551 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~ 629 (805)
.+-.+.+.++...-++..+.-.+.++-.| ..+.+|+.+|.+.+.+.+|.+.|+.. +..|+...|+-+..++.+.|+.
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh
Confidence 12234455555555555555554433333 56666777777777777777777643 5567777777777777777777
Q ss_pred HHHHHHHHHHhc
Q 039715 630 EIGRLSAQHILD 641 (805)
Q Consensus 630 ~~a~~~~~~~~~ 641 (805)
++|.+..++.+-
T Consensus 378 ~~A~~~r~e~L~ 389 (400)
T COG3071 378 EEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHH
Confidence 777777766654
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.23 E-value=5.6e-07 Score=94.56 Aligned_cols=272 Identities=13% Similarity=0.146 Sum_probs=160.7
Q ss_pred cCCchHHHHHHHHHHHhCCCc------cHHHHHHHHHHHHhcCChHHHHHHHhcCCCCCh-------hhHHHHHHHHHHc
Q 039715 356 MEGLDLGNQIHSLVVRVGLLS------DVFVSNALMDVYAKCGRMENSVELFAESPKRNH-------VTWNTMIVGYVQL 422 (805)
Q Consensus 356 ~~~~~~a~~~~~~~~~~g~~~------~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~ 422 (805)
.|+..+-...|..+++.- .| -...|..+.+.|-..|+++.|+.+|++..+-+- ..|..-...=.+.
T Consensus 360 e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 455666666677666531 11 134577778888888888888888887655321 2455555555566
Q ss_pred CChHHHHHHHHHHhhcCCC----------C-------ChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHH
Q 039715 423 GEVGKAMIMFSKMLEEQVP----------A-------TEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANAL 485 (805)
Q Consensus 423 g~~~~A~~~~~~m~~~g~~----------p-------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 485 (805)
.+++.|+++.+......-. | +...|+..+..-...|-++..+.+++.+++..+.. +.+....
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT-Pqii~Ny 517 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINY 517 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHH
Confidence 7777777777665432111 1 12346666666667778888888888888776542 2222223
Q ss_pred HHHHHhcCCHHHHHHHhhhcCC----CCH-hHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 039715 486 IDMYAKCGSITDARLVFDMMND----WNE-VSWNAMISGYSM---HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSA--C 555 (805)
Q Consensus 486 i~~y~~~g~~~~A~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~ 555 (805)
.-.+-...-++++.+++++-.. |++ ..||..+.-+.+ .-+.+.|..+|++.++ |.+|...-+..|+-| =
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 3334455667888888887652 333 367776655543 2357788888888888 666765533333332 1
Q ss_pred HcCCCHHHHHHHHHHHHH--------------------hcCCCCChHHHHHHH----------------HHHHhcCCHHH
Q 039715 556 SNGGLLEQGEAYFKSMVA--------------------NYGIEPCIEHYTSMV----------------SLLGRAGHLDK 599 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~--------------------~~~~~p~~~~~~~li----------------~~~~~~g~~~e 599 (805)
..-|....|..+++++.. .||+..+...|.--| ++=.+.|.++.
T Consensus 597 Ee~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidR 676 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDR 676 (835)
T ss_pred HHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHH
Confidence 234666666666655432 233333333332222 23345688888
Q ss_pred HHHHHHcCC--CCC--CHHHHHHHHHHHHHcCCHH
Q 039715 600 AAKLIEGIP--FQP--SVMIWRALLGACIIHNNVE 630 (805)
Q Consensus 600 A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~ 630 (805)
|..++.-.. ..| +...|.+.-.-=.+|||-+
T Consensus 677 ARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 677 ARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 888876331 233 4567888877778888843
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.5e-11 Score=88.18 Aligned_cols=50 Identities=22% Similarity=0.544 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhc
Q 039715 120 RNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVS 169 (805)
Q Consensus 120 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 169 (805)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 64
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.23 E-value=1.6e-07 Score=99.44 Aligned_cols=213 Identities=14% Similarity=0.163 Sum_probs=139.5
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 039715 416 IVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSI 495 (805)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 495 (805)
...+.+.|+++.|+..|-+... ....+.+......+.+|..+++.+..... -...|.-+.+-|+..|++
T Consensus 713 g~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 3445566777777776655432 12334455566677777777776665542 223456677788888888
Q ss_pred HHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 496 TDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN--LTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 496 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
+.|+++|.+.- .++--|..|.+.|++++|.++-.+.. .|.. ..|..-..-....|++.+|.++|-.+.
T Consensus 782 e~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 782 EIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 88888886543 34556677888888888887766543 3433 344444444667788888887763322
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 574 NYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSV--MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 574 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
.|+. -|.+|-|.|..++.+.+.++-. |+. .+...+..-+-..|+...|+..|-++ +-+-
T Consensus 852 ----~p~~-----aiqmydk~~~~ddmirlv~k~h--~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~k 912 (1636)
T KOG3616|consen 852 ----EPDK-----AIQMYDKHGLDDDMIRLVEKHH--GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFK 912 (1636)
T ss_pred ----CchH-----HHHHHHhhCcchHHHHHHHHhC--hhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHH
Confidence 3443 3678888888888888887753 442 35666667777788888888766544 3355
Q ss_pred HHHHHHHhcCChHHHhh
Q 039715 652 LLSNIYAMARSWEKAAS 668 (805)
Q Consensus 652 ~l~~~~~~~g~~~~a~~ 668 (805)
.-.|+|...|.|++|.+
T Consensus 913 aavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYR 929 (1636)
T ss_pred HHHHHhhhhhhHHHHHH
Confidence 66788888888888887
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=8.7e-08 Score=95.49 Aligned_cols=291 Identities=12% Similarity=0.091 Sum_probs=192.9
Q ss_pred ccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHH
Q 039715 219 FNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARR 298 (805)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 298 (805)
..|+|..|..+..+-.+.+-.|- ..|.....+.-+.|+.+.+-..+..+.+...+++..+.-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 56788888888877666654442 34555566667788888888888887777556667777777777777888777776
Q ss_pred HHhhCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCC
Q 039715 299 IFEEMP---KKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLL 375 (805)
Q Consensus 299 ~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 375 (805)
-.+++. .+++........+|.+.|++.+...++..|.+.|+--|... .++
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l---------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL---------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH----------
Confidence 665543 34566677777788888888888888887777765433321 000
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 039715 376 SDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLR 452 (805)
Q Consensus 376 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 452 (805)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. .+-
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLI 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHH
Confidence 112334444444333444444445555553 356666677888888889999999888888887777622 223
Q ss_pred HHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHhHHHHHHHHHHhCCChHHHH
Q 039715 453 ACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN--DWNEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 453 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 530 (805)
.+.+.++.+.-.+..+...+.. +.++..+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+..+|.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4556666666666665555543 3345777788888888888888888887665 457777777777888888887777
Q ss_pred HHHHHHHHcCCCC
Q 039715 531 KVFDLMQQRGWRP 543 (805)
Q Consensus 531 ~l~~~m~~~g~~p 543 (805)
+.+++.+..-..|
T Consensus 382 ~~r~e~L~~~~~~ 394 (400)
T COG3071 382 QVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHhcCC
Confidence 7777766433333
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=6.9e-09 Score=116.68 Aligned_cols=236 Identities=11% Similarity=0.016 Sum_probs=166.2
Q ss_pred ChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHh---------ccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 039715 424 EVGKAMIMFSKMLEEQVPATEV-TYSSVLRACA---------SLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG 493 (805)
Q Consensus 424 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 493 (805)
..++|+.+|++..+. .|+.. .+..+..++. ..+++++|...++.+++.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356788888887764 45443 3333333322 2234678888888888776 456778888888899999
Q ss_pred CHHHHHHHhhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHH
Q 039715 494 SITDARLVFDMMND--W-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFK 569 (805)
Q Consensus 494 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 569 (805)
++++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++.++...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998763 3 566888889999999999999999999998 567643 33334445666889999999998
Q ss_pred HHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 570 SMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSV-MIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 570 ~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
++... ..| ++..+..+...|...|++++|...++++ +..|+. ..++.+...|...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 87743 234 4556777888899999999999999876 344544 44666666666666 47777777777643333
Q ss_pred cchHHHHHHHHHhcCChHHHhh
Q 039715 647 EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 647 ~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.....+..+|+-.|+-+.+..
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~ 528 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKM 528 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHH
Confidence 3333347777777777776644
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=1.2e-10 Score=83.53 Aligned_cols=50 Identities=32% Similarity=0.571 Sum_probs=47.1
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 039715 508 WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSN 557 (805)
Q Consensus 508 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 557 (805)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=4.3e-08 Score=94.54 Aligned_cols=280 Identities=9% Similarity=0.080 Sum_probs=202.5
Q ss_pred cCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC-CCh------hhHHHHHHHHHHcCChHHH
Q 039715 356 MEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK-RNH------VTWNTMIVGYVQLGEVGKA 428 (805)
Q Consensus 356 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~~A 428 (805)
.++.++|...|-.|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-+.+.+ ||. .....|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467789999999998844 44566777899999999999999999988655 442 2344567778889999999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHhhh
Q 039715 429 MIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMD----VVVANALIDMYAKCGSITDARLVFDM 504 (805)
Q Consensus 429 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~ 504 (805)
..+|..+.+.+ .--......|+..|-...++++|.+.-..+.+.+-.+. ...|.-|...+....+.+.|...+.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998754 22344677888899999999999999888888765443 22355566677778889999999988
Q ss_pred cCCCC---HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh
Q 039715 505 MNDWN---EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI 581 (805)
Q Consensus 505 ~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 581 (805)
..+.| +..=-.+...+...|++..|++.++...+.+..--..+...|..+|.+.|+.+++...+..+.+. .+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~ 282 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGA 282 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCc
Confidence 87433 33444466778889999999999999988642222446777888899999999999999888744 4555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHh
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLI-EGIPFQPSVMIWRALLGACII---HNNVEIGRLSAQHIL 640 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~-~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 640 (805)
..-..|.+......-.++|...+ +.+.-+|+...+..|+..-.. .|...+....++.++
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 55556666655555566666554 456668888888888876432 233344444444443
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=5.3e-08 Score=104.18 Aligned_cols=232 Identities=16% Similarity=0.180 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCC----------CChh-hHHHHHHHHHHcCChHHHHHHHHHHhhcC---CCCCh
Q 039715 379 FVSNALMDVYAKCGRMENSVELFAESPK----------RNHV-TWNTMIVGYVQLGEVGKAMIMFSKMLEEQ---VPATE 444 (805)
Q Consensus 379 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~ 444 (805)
.+...|..+|...|+++.|..+|+...+ +.+. .-+.+...|...+++++|..+|+++...- .-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444466666666666666666644221 1222 23446677888888888888888875421 01111
Q ss_pred hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC----------CCHh-HH
Q 039715 445 VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND----------WNEV-SW 513 (805)
Q Consensus 445 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~~-~~ 513 (805)
+.-..+++.|..+|.+.|++++|...+++..+ +.+. ..
T Consensus 280 -------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 280 -------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred -------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 11123344444555555555555554443321 1121 34
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----C-CCCC-
Q 039715 514 NAMISGYSMHGLSAEVLKVFDLMQQR---GWRPNN----LTFVGVLSACSNGGLLEQGEAYFKSMVANY----G-IEPC- 580 (805)
Q Consensus 514 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~- 580 (805)
+.++..+...+++++|..++++..+. -+.++. -++..+...+.+.|++++|.++|++++... + ..+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 45566666777777777777765442 122332 367778888888888888888888876543 1 1222
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC--------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI--------PFQPSV-MIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
..+++.|...|.+.+++++|.++|.+. |..|++ .++..|...|+..|+++.|+++.++++.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 356777888888888888888887754 345665 4799999999999999999999888874
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=3.2e-07 Score=98.62 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMV 588 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 588 (805)
..|......+...++.++|...+.+... +.|- ...|......+...|..++|.+.|.... .++|+ +....++.
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHH
Confidence 3577777888999999999988888877 4453 3355555566778899999999998877 67885 57889999
Q ss_pred HHHHhcCCHHHHHH--HHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 589 SLLGRAGHLDKAAK--LIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 589 ~~~~~~g~~~eA~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.+|.+.|+..-|.. ++..+ ...| +...|-.|+....+.|+.++|.+.|..++++++.+|.
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999997766666 77655 4555 5679999999999999999999999999999987764
No 71
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=5.9e-06 Score=91.00 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 039715 409 HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDM 488 (805)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 488 (805)
+..|..+..+-.+.|...+|++-|-+. -|...|.-++..+.+.|.+++-..++..+.+..-+|. +-+.|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHH
Confidence 456888888888888888888877553 3556788888888888888888888888777665544 44678888
Q ss_pred HHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHH
Q 039715 489 YAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKV 532 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 532 (805)
|++.+++.+-++++. .+|+.....+..-|...|.++.|.-+
T Consensus 1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 888888887766543 23333333444444444444444333
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=2e-08 Score=103.28 Aligned_cols=234 Identities=9% Similarity=-0.040 Sum_probs=156.9
Q ss_pred CChHHHHHHHHHHhhcC-CCCCh--hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 039715 423 GEVGKAMIMFSKMLEEQ-VPATE--VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDAR 499 (805)
Q Consensus 423 g~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 499 (805)
+..+.++.-+.+++... ..|+. ..|......+...|+.++|...+...++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34555666666665432 12221 235555556666777777777777776654 446788889999999999999999
Q ss_pred HHhhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Q 039715 500 LVFDMMND--W-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYG 576 (805)
Q Consensus 500 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 576 (805)
+.|++..+ | +..+|..++.++...|++++|++.|++..+ ..|+..........+...++.++|...|......
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 99998863 3 567888899999999999999999999998 5676542222222345567899999999775532
Q ss_pred CCCChHHHHHHHHHHHhcCCHHH--HHHHHHc-CC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCc
Q 039715 577 IEPCIEHYTSMVSLLGRAGHLDK--AAKLIEG-IP----FQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEP-EDE 647 (805)
Q Consensus 577 ~~p~~~~~~~li~~~~~~g~~~e--A~~~~~~-~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~ 647 (805)
..|+... ..++..+ .|++.+ +.+.+.+ .. ..| ....|..++..+...|+.++|+..|+++++++| +..
T Consensus 195 ~~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 3343322 2333333 444433 3333321 11 112 235799999999999999999999999999997 666
Q ss_pred chHHHHHHHHHhcCChH
Q 039715 648 ATHVLLSNIYAMARSWE 664 (805)
Q Consensus 648 ~~~~~l~~~~~~~g~~~ 664 (805)
++-..+..+....++.+
T Consensus 272 e~~~~~~e~~~~~~~~~ 288 (296)
T PRK11189 272 EHRYALLELALLGQDQD 288 (296)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 66666766665555443
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.9e-07 Score=88.83 Aligned_cols=309 Identities=13% Similarity=0.117 Sum_probs=167.0
Q ss_pred ChHHHHHHHhhCCCC--CcccHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh--ccCCchHHHHHH
Q 039715 292 EISNARRIFEEMPKK--DVIPWSF-MIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACA--TMEGLDLGNQIH 366 (805)
Q Consensus 292 ~~~~A~~~f~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~ 366 (805)
.+++|..++.++... +....|. |.-+|.+..-++-+.+++.--++. -||+ |+..=+.+|. +.=+-..+++-.
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHH
Confidence 477888888777543 3334443 344667777777777777666553 3343 3333333432 221222233223
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHhc-----CChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 039715 367 SLVVRVGLLSDVFVSNALMDVYAKC-----GRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVP 441 (805)
Q Consensus 367 ~~~~~~g~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 441 (805)
..+.+.+-..- -.+.-.++. ..-+.|++++-.+.+.=+..--.++--|.++++..+|..+.+++.- ..
T Consensus 243 k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--tt 315 (557)
T KOG3785|consen 243 KELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TT 315 (557)
T ss_pred HHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CC
Confidence 33332221110 011112221 1224455544333222222333455567788888888888776631 12
Q ss_pred CChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC----C-CHhHHHHH
Q 039715 442 ATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND----W-NEVSWNAM 516 (805)
Q Consensus 442 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~-~~~~~~~l 516 (805)
|-....-.+..+ ..| .-......+.-|.+.|+-.-+ . .+.--.+|
T Consensus 316 P~EyilKgvv~a--alG----------------------------Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 316 PYEYILKGVVFA--ALG----------------------------QETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hHHHHHHHHHHH--Hhh----------------------------hhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 222222222111 111 111111122333444433221 1 22234455
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-CChHHHHH-HHHHHHhc
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIE-PCIEHYTS-MVSLLGRA 594 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~-li~~~~~~ 594 (805)
.+.+.-..++++.+-.++....-- ..|..--..+..|.+..|.+.+|.++|-.+. +.+ .+..+|.+ |...|.++
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is---~~~ikn~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRIS---GPEIKNKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHHHHHhc
Confidence 566666667777777777766642 3333444456778888899999999986654 333 34455554 46788999
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 595 GHLDKAAKLIEGIPFQPSVMIWRAL-LGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 595 g~~~eA~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
|..+-|++++-++....+..+.-.+ .+-|.+.+.+--|-++|..+..++|
T Consensus 442 kkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred CCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 9999999999888634455554444 4569999999999999999988988
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.8e-06 Score=88.87 Aligned_cols=433 Identities=14% Similarity=0.149 Sum_probs=256.5
Q ss_pred HHHHhhh----ccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHH--HHH
Q 039715 212 RKVFDGL----FNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVA--LLD 285 (805)
Q Consensus 212 ~~~~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~ 285 (805)
..+|..+ .+|++++|+....++...+ +-|...+..=+-+..+.+.++.|..+.+. .+. ..+++. +=.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEK 85 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHH
Confidence 4445444 7899999999999998876 33445566667777788888888744332 221 111111 234
Q ss_pred HHH--cCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhccCCchHH
Q 039715 286 LYT--KSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPN-QFTFVSVLQACATMEGLDLG 362 (805)
Q Consensus 286 ~y~--~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a 362 (805)
+|| +.+..|+|...++.....+......-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-... .+
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~ 161 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV 161 (652)
T ss_pred HHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH
Confidence 444 779999999999966555555666666788899999999999999977653311 11122222221111 11
Q ss_pred HHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCChHHHHHHHhcC--------CCCC-----hhh-----HHHHHHHHHHc
Q 039715 363 NQIHSLVVRVGLLSD--VFVSNALMDVYAKCGRMENSVELFAES--------PKRN-----HVT-----WNTMIVGYVQL 422 (805)
Q Consensus 363 ~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~--------~~~~-----~~~-----~~~li~~~~~~ 422 (805)
. .+......|+ -..+-.....+...|++.+|+++++.. .+.| ... ---|.-.+...
T Consensus 162 ~----~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 162 Q----LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred H----HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1 1222222221 122223445677899999999999775 2221 111 12233456678
Q ss_pred CChHHHHHHHHHHhhcCCCCChhhHHHH---HHHHhccCCchhH--HHHHHHHH-----------HcCCCCcHhHHHHHH
Q 039715 423 GEVGKAMIMFSKMLEEQVPATEVTYSSV---LRACASLAALEPG--MQVHCLTV-----------KANYDMDVVVANALI 486 (805)
Q Consensus 423 g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~a--~~~~~~~~-----------~~~~~~~~~~~~~li 486 (805)
|+.++|..++...+... .+|....... |.+...-.++-.+ ...++... ...-.....--+.++
T Consensus 238 Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998875 4454322222 1222222222221 11111110 000011122334555
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCC-HhHHHHHHH-HH-HhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCH
Q 039715 487 DMYAKCGSITDARLVFDMMNDWN-EVSWNAMIS-GY-SMHGLSAEVLKVFDLMQQRGWRPNN--LTFVGVLSACSNGGLL 561 (805)
Q Consensus 487 ~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~-~~-~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~ 561 (805)
.+|. +..+.+.++-...+..- ...+.+++. ++ .+...+.+|.+++...-+. .|+. +.....+......|++
T Consensus 317 ~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 317 ALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCH
Confidence 5654 55667777766666432 333444433 32 2233577888888887764 4544 3344444556789999
Q ss_pred HHHHHHHH--------HHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC--------CCCCCH-HHHHHHHHHHH
Q 039715 562 EQGEAYFK--------SMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI--------PFQPSV-MIWRALLGACI 624 (805)
Q Consensus 562 ~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~~-~~~~~l~~~~~ 624 (805)
+.|.+++. .+. .+.-.+.+...++.+|.+.+..+-|..++.+. +..+.. .+|.-+...-.
T Consensus 393 ~~A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 99999998 443 23334566778889999888766666665533 222222 34445555556
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++|+.++|...++++++.+|++....+.+.-.|+... .+.|..
T Consensus 470 r~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~ 512 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAES 512 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHH
Confidence 7899999999999999999999999999999888764 344443
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.08 E-value=8.7e-09 Score=105.90 Aligned_cols=201 Identities=12% Similarity=0.032 Sum_probs=146.6
Q ss_pred CchhHHHHHHHHHHcC-CCC--cHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHH
Q 039715 459 ALEPGMQVHCLTVKAN-YDM--DVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKV 532 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 532 (805)
..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455556666666432 222 245688888899999999999999998863 3678999999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-C-C
Q 039715 533 FDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-P-F 609 (805)
Q Consensus 533 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~ 609 (805)
|++.++ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. . .
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 6776 45778888889999999999999999884 4565432222333455678999999999654 2 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------ccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 610 QPSVMIWRALLGACIIHNNVEIGRLSAQHIL-------DFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 610 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.|+...| .......|+..++ ..++.+. ++.|+.+.+|..||.+|...|++++|..
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3333222 2223335555433 2333333 5667778899999999999999999988
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=3.6e-08 Score=98.21 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=114.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 039715 409 HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDM 488 (805)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 488 (805)
...+..+...|...|++++|.+.|++..+.. |+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHH
Confidence 3456777777777888888888877776532 22 22333444445
Q ss_pred HHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHH
Q 039715 489 YAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQG 564 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 564 (805)
|...|++++|.+.|++..+ .+...+..+...+...|++++|++.|++.......| ....+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 234455555666666666666666666665532222 223444455556666777777
Q ss_pred HHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 565 EAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF-QPSVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 565 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
...+++.... .| +...+..+...+...|++++|.+.+++. .. ..+...+..+...+...|+.++|....+.+.+
T Consensus 155 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 155 EKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777666532 23 3455666667777777777777766654 11 22445555666666677777777777666655
Q ss_pred cCC
Q 039715 642 FEP 644 (805)
Q Consensus 642 ~~p 644 (805)
..|
T Consensus 232 ~~~ 234 (234)
T TIGR02521 232 LFP 234 (234)
T ss_pred hCc
Confidence 443
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=99.06 E-value=1.2e-08 Score=114.68 Aligned_cols=198 Identities=13% Similarity=0.039 Sum_probs=156.4
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHH---------hcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCCh
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYA---------KCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLS 526 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 526 (805)
.+++|...+++.++.. +.+...+..+..+|. ..+++++|...+++..+. +...|..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4578888888888765 334556666666554 234589999999988743 677899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 039715 527 AEVLKVFDLMQQRGWRPNN-LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI-EHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 527 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
++|+..|++.++ +.|+. ..+..+..++...|++++|...++++. .+.|+. ..+..+...+...|++++|...+
T Consensus 355 ~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999 56764 467778888999999999999999988 456653 23334455577789999999999
Q ss_pred HcCC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 605 EGIP--FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 605 ~~~~--~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
+++- ..|+ +..+..+..++...|+.++|...++++....|++......|+..|...|+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 8762 1354 45677788888899999999999999999999888888899999988884
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.04 E-value=6.1e-07 Score=98.80 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=91.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---cchHHHHHH
Q 039715 92 FATNVLLNVYVKLNRLPDATKLFDEMPE---RNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELN---PFAFTAFLK 165 (805)
Q Consensus 92 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~ 165 (805)
..|..|...|...-+...|.+.|++.-+ .+..+|-.+...|++..+++.|..+.-..-+ ..|- ...|..+--
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhccc
Confidence 5688899999888888899999998765 4566899999999999999999998333322 1111 112222222
Q ss_pred HHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh
Q 039715 166 VLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL 218 (805)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 218 (805)
.+.+.++...+..-++...+.. +-|...|..|..+|.++|++..|.++|++.
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 3445666666766677666655 457889999999999999999999999866
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.03 E-value=1.1e-08 Score=94.26 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN-LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVS 589 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 589 (805)
+...|.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+... .+.| +-.+.|..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 345577889999999999999999999 56754 488888888999999999999999988 5677 4678899999
Q ss_pred HHHhcCCHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 590 LLGRAGHLDKAAKLIEGIPFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 590 ~~~~~g~~~eA~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
-++.+|++++|...|++.-..|+ ..+|.+++..-.+.|+.+.|...+++.++++|+.+.....++......|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999997732333 45899998888899999999999999999999999999999999999999999
Q ss_pred Hhh
Q 039715 666 AAS 668 (805)
Q Consensus 666 a~~ 668 (805)
|.-
T Consensus 192 Ar~ 194 (250)
T COG3063 192 ARL 194 (250)
T ss_pred HHH
Confidence 976
No 80
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.02 E-value=4.5e-06 Score=88.76 Aligned_cols=492 Identities=12% Similarity=0.149 Sum_probs=235.4
Q ss_pred hCCCchHHHHHhccCCC-CCcc-hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHH
Q 039715 103 KLNRLPDATKLFDEMPE-RNTI-SFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVF 180 (805)
Q Consensus 103 ~~g~~~~A~~~f~~~~~-~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 180 (805)
..|+++.|...++.... |+.. .|-.+...-...|++--|.+.|..+-. .++...+....++-
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai~d----------------vak~r~lhd~~eia 519 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGD----------------VAKARFLHDILEIA 519 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHH----------------HHHHHHHHHHHHHH
Confidence 45677777777766543 4544 466666666666666666666554422 01111111111222
Q ss_pred HHHH-HhC-CCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCC---------CCCCh-hhHHHH
Q 039715 181 ACVY-KLG-HDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVG---------FKPNN-FTFAFV 248 (805)
Q Consensus 181 ~~~~-~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g---------~~p~~-~t~~~l 248 (805)
++.. +.| -..+-+-..+++.+..+ ++.+|+.+|- .++..++|+.+++++.+-. -.|.. ..-.+-
T Consensus 520 deas~~~ggdgt~fykvra~lail~k--kfk~ae~ifl--eqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy 595 (1636)
T KOG3616|consen 520 DEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFL--EQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSY 595 (1636)
T ss_pred HHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHH--hcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHH
Confidence 2111 111 11222222333333322 4555555554 3444555555555543210 01111 111223
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhC--CCCCcccHHHHHHHHHhCCChhH
Q 039715 249 LKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEM--PKKDVIPWSFMIARYAQTDLSID 326 (805)
Q Consensus 249 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~ 326 (805)
++++...|+-+.|-++- .+.--.-+-|..|.+.|.+..|.+.-..- ...|......+..++.+..-+++
T Consensus 596 ~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydk 666 (1636)
T KOG3616|consen 596 LQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDK 666 (1636)
T ss_pred HHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHh
Confidence 34444444444433321 11111235577888888888877654322 12344445555566666666666
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHH-HHHH---------------------
Q 039715 327 AVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFV-SNAL--------------------- 384 (805)
Q Consensus 327 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~L--------------------- 384 (805)
|-++|+++.. +...+..+.+-..+-+|.++-+.. ++..++. -..-
T Consensus 667 agdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 667 AGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred hhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 6666666542 112222222222233333332221 1111111 0111
Q ss_pred -----HHHHHhcCChHHHHHHHhcCCCCChhh--HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhcc
Q 039715 385 -----MDVYAKCGRMENSVELFAESPKRNHVT--WNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASL 457 (805)
Q Consensus 385 -----i~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 457 (805)
+.+-.....+.+|+.+++.+.++++.+ |..+...|...|+++.|.++|.+.- .+.-.+..|.+.
T Consensus 734 ~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~ 804 (1636)
T KOG3616|consen 734 CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKA 804 (1636)
T ss_pred hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcc
Confidence 222233344444445555444443332 3444445555555555555554321 123334445555
Q ss_pred CCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039715 458 AALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQ 537 (805)
Q Consensus 458 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 537 (805)
|+++.|.++-... .|.+.....|-+-..-+-+.|++.+|++++-.+..|+. -|..|-++|..++.+.+..+-
T Consensus 805 ~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~- 876 (1636)
T KOG3616|consen 805 GKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH- 876 (1636)
T ss_pred ccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-
Confidence 5555544433222 12222333344444444455555555555544444433 234455555555555544432
Q ss_pred HcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC---
Q 039715 538 QRGWRPNN--LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPS--- 612 (805)
Q Consensus 538 ~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~--- 612 (805)
.|+. .|...+..-+...|++..|...|-+.. -|.+-+.+|-..|.+++|..+-+.-. ..|
T Consensus 877 ----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakteg-g~n~~k 941 (1636)
T KOG3616|consen 877 ----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEG-GANAEK 941 (1636)
T ss_pred ----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccc-cccHHH
Confidence 2332 355555666677777777777654432 35667788888888999888876432 112
Q ss_pred --HHHHHHHH------HHHHHcCCHHHHHHH------HHHHhc-----cCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 613 --VMIWRALL------GACIIHNNVEIGRLS------AQHILD-----FEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 --~~~~~~l~------~~~~~~g~~~~a~~~------~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...|.--+ ..+.+||-.+.|+.. |+-+++ .....+..+.-++..+...|++++|.+
T Consensus 942 ~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 942 HVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred HHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhH
Confidence 23443222 335677877777653 222322 233456778889999999999999977
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7.3e-06 Score=81.92 Aligned_cols=262 Identities=8% Similarity=-0.044 Sum_probs=149.2
Q ss_pred CCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHH---HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 039715 273 YEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSF---MIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSV 349 (805)
Q Consensus 273 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 349 (805)
++.|+.....+...|...|+.++|...|++...-|+.+... -.-.+.+.|++++...+...+.... .-....|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 56677788888888899999999999998776544443222 2233456777777777766665431 1112222222
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC--C-CChhhHHHHHHHHHHcCChH
Q 039715 350 LQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESP--K-RNHVTWNTMIVGYVQLGEVG 426 (805)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~ 426 (805)
+...-...+++.|..+-++.++.+ +.+...+-.-...+...|+.++|.-.|+... . -+..+|.-|+..|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 222344566777777777776654 3333344334456667788888888887643 3 36778888888888888888
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHH-HHHh-ccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhh
Q 039715 427 KAMIMFSKMLEEQVPATEVTYSSVL-RACA-SLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDM 504 (805)
Q Consensus 427 ~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 504 (805)
||.-+-+...+. ++.+..+...+. ..|. ....-++|+.+++..++.. +.-....+.+...+...|+.+++..++++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 887766554432 222333333321 1221 1222345555555554443 22233444555555555555555555555
Q ss_pred cC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 505 MN--DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 505 ~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
.. .+|....+.|...+...+.+.+|++.|...+.
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 43 34555555555555555555555555555554
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.99 E-value=1.1e-05 Score=85.36 Aligned_cols=437 Identities=13% Similarity=0.051 Sum_probs=244.1
Q ss_pred cccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHH
Q 039715 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRI 299 (805)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 299 (805)
.++|...+.+.+.... +..-...|.....-.+...|+.++|.......++..+ .+.+.|..+.-.+-...++++|.+.
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHH
Confidence 4566666666666665 2222334444444445567777777777776666432 3455666666666666778888888
Q ss_pred HhhCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCC-C
Q 039715 300 FEEMPK---KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGL-L 375 (805)
Q Consensus 300 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~ 375 (805)
|..... .|...|.-+.-.-++.++++.....-.+..+.. .-....|..+..+.--.|+...|..+.+...+... .
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 876543 345556666666667777777777666666531 22334566666666777788888888877776552 3
Q ss_pred ccHHHHHHH------HHHHHhcCChHHHHHHHhcCCCC--Ch-hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhh
Q 039715 376 SDVFVSNAL------MDVYAKCGRMENSVELFAESPKR--NH-VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVT 446 (805)
Q Consensus 376 ~~~~~~~~L------i~~y~~~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 446 (805)
|+...+.-. .....+.|..++|.+.+...... |- ..-......+.+.+++++|..++..++.. .||..-
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~ 254 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLD 254 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHH
Confidence 444333322 23345667777777776655432 22 22234456677788888888888888775 577776
Q ss_pred HHHHHHHHh-cc-CCchhHHHHHHHHHHcC---CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCC-HhHHHHHHHHH
Q 039715 447 YSSVLRACA-SL-AALEPGMQVHCLTVKAN---YDMDVVVANALIDMYAKCGSITDARLVFDMMNDWN-EVSWNAMISGY 520 (805)
Q Consensus 447 ~~~ll~a~~-~~-~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~ 520 (805)
|.-.+..+. .. +..+....++....+.- ..|-....+.+ . ...-.+...+++..+.++. +..+..+.+.|
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl-~---~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy 330 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL-N---GEELKEIVDKYLRPLLSKGVPSVFKDLRSLY 330 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh-C---cchhHHHHHHHHHHHhhcCCCchhhhhHHHH
Confidence 666555544 22 22222224444433321 11110000000 0 0011111222222222221 22233333333
Q ss_pred HhCCChHH----HHHHHHHHHHcC----------CCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHH
Q 039715 521 SMHGLSAE----VLKVFDLMQQRG----------WRPNNL--TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEH 583 (805)
Q Consensus 521 ~~~g~~~~----A~~l~~~m~~~g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~ 583 (805)
-.-.+.+- +..+...+-..| -+|... |+..+...+-+.|+++.|..+.+... +-.|+ ++.
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEl 407 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIEL 407 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHH
Confidence 22221111 111111111111 134433 44556667888999999999998877 55676 466
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch-------HHH--
Q 039715 584 YTSMVSLLGRAGHLDKAAKLIEGIP--FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT-------HVL-- 652 (805)
Q Consensus 584 ~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~-- 652 (805)
|..=..++...|.+++|..++++.. -.||..+-.--..-..+.++.++|.++..+-.+-+-+-... |..
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 7677788888999999999998763 23454443333344456788888888877666544311111 111
Q ss_pred HHHHHHhcCChHHHhh
Q 039715 653 LSNIYAMARSWEKAAS 668 (805)
Q Consensus 653 l~~~~~~~g~~~~a~~ 668 (805)
=|..|.++|+|.+|.+
T Consensus 488 ~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 488 DGEAYLRQNKLGLALK 503 (700)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 2778999999999998
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.98 E-value=1.2e-05 Score=89.00 Aligned_cols=157 Identities=13% Similarity=0.006 Sum_probs=99.2
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCc---chHHHHHH--HH
Q 039715 58 SYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNT---ISFVTTIQ--GY 132 (805)
Q Consensus 58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~--~~ 132 (805)
.|..+...|...-+...|.+.|....+... .+...+..+...|++...++.|..+.-...+.+. ..||.+-+ .|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 466777777655577778888877776553 3566788888999999999998887433333211 12333333 45
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHH
Q 039715 133 TVSSQFVEAVGLFSTLHREGHELN-PFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFA 211 (805)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 211 (805)
.+.++...|+.-|+...+ +.|. ...|..+..+|.+.|.+..|.++|..+...... +.+.---...+-+..|.+.+|
T Consensus 573 Lea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHH
Confidence 667777777777777766 4453 347777778888888888888777776665421 222222222334455666666
Q ss_pred HHHHhhh
Q 039715 212 RKVFDGL 218 (805)
Q Consensus 212 ~~~~~~~ 218 (805)
...+..+
T Consensus 650 ld~l~~i 656 (1238)
T KOG1127|consen 650 LDALGLI 656 (1238)
T ss_pred HHHHHHH
Confidence 6666555
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.7e-08 Score=97.10 Aligned_cols=218 Identities=14% Similarity=0.109 Sum_probs=127.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 039715 413 NTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKC 492 (805)
Q Consensus 413 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 492 (805)
+-|..+|.+.|.+.+|..-|+.-++. .|-..||..|-.+|.+...++.|..++..-++.- +.++...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l---------- 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYL---------- 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhh----------
Confidence 45667777777777777777766654 3333445445555555555555554444444331 2233333
Q ss_pred CCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 039715 493 GSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 493 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 571 (805)
.-+...+-..++.++|+++|+...+. .| +......+...|...++.+-|..+++++
T Consensus 294 ---------------------~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 294 ---------------------LGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ---------------------hhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 33444444455555555555555542 23 2223444444455555555555555555
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 572 VANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI---PFQPS--VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 572 ~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
..- |+ .+++.|..+.-.+.-.+++|-++.-|++. .-+|+ ..+|-.|.....--||+..|.+.|+-++.-+|++
T Consensus 351 Lqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 LQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 532 32 24445555555555555555555555433 11343 3468888777777888888888888888888888
Q ss_pred cchHHHHHHHHHhcCChHHHhh
Q 039715 647 EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 647 ~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+++++|+-+-.+.|+.++|..
T Consensus 429 ~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHH
Confidence 8888888888888888888866
No 85
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=2.7e-08 Score=95.75 Aligned_cols=242 Identities=13% Similarity=0.130 Sum_probs=163.1
Q ss_pred ccHHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHH-HHH
Q 039715 376 SDVFVSNALMDVYAKCGRMENSVELFAESPK--RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSS-VLR 452 (805)
Q Consensus 376 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~ 452 (805)
.|-.--+.+..+|.+.|.+.+|.+.|+...+ +-+.+|-.|-..|.+..+++.|+.+|.+-.+. .|-.+||.. ..+
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 3444557899999999999999999987543 56778888999999999999999999998764 677777643 333
Q ss_pred HHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHH
Q 039715 453 ACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKV 532 (805)
Q Consensus 453 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 532 (805)
.+...++.+.+.+++..+.+.. + .|+.+...+..+|.-.++++-|+.+
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~-------------------------------~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-P-------------------------------INVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-C-------------------------------ccceeeeeeeeccccCCChHHHHHH
Confidence 3344444444444444444432 1 1344444555566667777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHcC-CC
Q 039715 533 FDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC--IEHYTSMVSLLGRAGHLDKAAKLIEGI-PF 609 (805)
Q Consensus 533 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~ 609 (805)
|+++++.|+. +...|+.+.-.|...+.+|-++.-|++.... .-.|+ ..+|-.|.....-.|++.-|...|+-. ..
T Consensus 347 YRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 347 YRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 7777777643 5566667666777777777777777776643 33343 356777777777777777777777633 22
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 610 QPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 610 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
.|+ ...++.|.-.-.+.|++++|...+..+-.+.|+-.+...+|
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 333 45677777777777788888877777777777655544433
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=6.1e-05 Score=79.16 Aligned_cols=216 Identities=12% Similarity=0.058 Sum_probs=125.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHH--HHHHHHhcC
Q 039715 129 IQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTA--LIDAFSVCG 206 (805)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~~~g 206 (805)
+.-+..+|++++|.....+....+ +-|...+..=+-++++.+.++.|..+. .+.+. ..+++. +=.+||.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~i---kk~~~---~~~~~~~~fEKAYc~-- 89 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLI---KKNGA---LLVINSFFFEKAYCE-- 89 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHH---Hhcch---hhhcchhhHHHHHHH--
Confidence 456677889999999999998865 333446666666777888888777332 22221 111111 1233332
Q ss_pred CHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChh-hHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC-cHhHHHHHH
Q 039715 207 CVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNF-TFAFVLKACLGLDTIRVAKSAHGCALKTCYEM-DLYVAVALL 284 (805)
Q Consensus 207 ~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li 284 (805)
| +.+..++|+..+. |..++.. +...-...|.+.++++++..+|..+.+++.+. +...-..++
T Consensus 90 --------Y---rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 90 --------Y---RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred --------H---HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 2 3455556665555 3444333 55555667888999999999999998887432 233333333
Q ss_pred HHHHcCCChHHHHHHHhhCCCCCcccHHH---HHHHHHhCCChhHHHHHHHHHHHCCC-------CCCh------hH-HH
Q 039715 285 DLYTKSGEISNARRIFEEMPKKDVIPWSF---MIARYAQTDLSIDAVELFCRMRQAFV-------APNQ------FT-FV 347 (805)
Q Consensus 285 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~------~t-~~ 347 (805)
..-.. -.+. +.+..+.....+|.. ....+...|++.+|+++++...+.+. .-+. .+ -.
T Consensus 154 a~~a~----l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 154 AVAAA----LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HHHHh----hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 22211 1121 344444443334433 34567788999999999988833210 0000 01 11
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCC
Q 039715 348 SVLQACATMEGLDLGNQIHSLVVRVGL 374 (805)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~g~ 374 (805)
-+.-.+...|+.++|.++|..+++...
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 222235677888889998888888774
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.86 E-value=2e-05 Score=85.87 Aligned_cols=250 Identities=15% Similarity=0.134 Sum_probs=154.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYA 490 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 490 (805)
|.-+...|...|++++|++++++.++. .|+.+ .|..-...+-+.|++.+|.+..+...... ..|..+-+-.+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 355677888899999999999998875 56644 67777888899999999999999988876 447888888899999
Q ss_pred hcCCHHHHHHHhhhcCCCC------H----hHHH--HHHHHHHhCCChHHHHHHHHHHHHcC--CC-------------C
Q 039715 491 KCGSITDARLVFDMMNDWN------E----VSWN--AMISGYSMHGLSAEVLKVFDLMQQRG--WR-------------P 543 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~------~----~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g--~~-------------p 543 (805)
++|++++|.+++......+ . ..|- .-..+|.+.|++..|++.|....+.- +. .
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 9999999999987776543 1 1343 34678899999999988877765421 11 1
Q ss_pred CHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhcCCCCCh-----------HHHHHHHHHH---HhcCCHHHHHH
Q 039715 544 NNLTFVGVLSACSNGGL-------LEQGEAYFKSMVANYGIEPCI-----------EHYTSMVSLL---GRAGHLDKAAK 602 (805)
Q Consensus 544 ~~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~-----------~~~~~li~~~---~~~g~~~eA~~ 602 (805)
...+|..++...-+... ...|.+++-.+...-...... .--.-+..-- .+...-+++..
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22334444443222111 123344443333221000000 0000000000 11111112221
Q ss_pred HHH---------------cCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 603 LIE---------------GIP--FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 603 ~~~---------------~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
.-. .-+ ..||+. -..|+ ....=.++|.+.++-+.+..|++..+|..--.+|.+.|++--
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~-GekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LL 509 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPL-GEKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLL 509 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCcc-HHHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHH
Confidence 110 001 222221 11122 122346889999999999999999999999999999999987
Q ss_pred Hhh
Q 039715 666 AAS 668 (805)
Q Consensus 666 a~~ 668 (805)
|.+
T Consensus 510 aLq 512 (517)
T PF12569_consen 510 ALQ 512 (517)
T ss_pred HHH
Confidence 764
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=2e-06 Score=84.00 Aligned_cols=181 Identities=13% Similarity=0.103 Sum_probs=110.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 039715 483 NALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGL-------SAEVLKVFDLMQQRGWRPNNL-TFVGVLSA 554 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 554 (805)
-.|+-.|.+.+++++|..+........+.-|-.-...++.+|+ ..-|.+.|+-.-+++..-|.+ --.++.++
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 3455568899999999998888765554444333334444443 344555665555555554433 23344455
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCCHHHHHHHHHHHHH-cCCHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP--FQPSVMIWRALLGACII-HNNVEI 631 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~l~~~~~~-~g~~~~ 631 (805)
+.-...+|+.+.++..+..- =...|... -.+..+++..|++.||+++|-++. .-.|..+|.+++.-|.. .|+.+.
T Consensus 369 fFL~~qFddVl~YlnSi~sY-F~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESY-FTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 55556788888888887632 23333333 357788889999999999988774 12456778877777655 455655
Q ss_pred HHHHHHHHhccC-CCC-cchHHHHHHHHHhcCChHHHhh
Q 039715 632 GRLSAQHILDFE-PED-EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 632 a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|-. .+++.+ |.+ -..+-.+++.+.+++.+--|.+
T Consensus 447 AW~---~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaK 482 (557)
T KOG3785|consen 447 AWD---MMLKTNTPSERFSLLQLIANDCYKANEFYYAAK 482 (557)
T ss_pred HHH---HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 444443 222 2233456777777777666655
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=5.8e-08 Score=101.08 Aligned_cols=208 Identities=15% Similarity=0.146 Sum_probs=144.5
Q ss_pred cCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHH
Q 039715 457 LAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVF 533 (805)
Q Consensus 457 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~ 533 (805)
.|++.+|.-.|+..++.. +.+...|--|.......++-..|+..+.+..+. |....-+|...|...|.-.+|+.+|
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344444444444444443 334455555555555555555566665555432 4555666666777777777777777
Q ss_pred HHHHHcCCCCCHH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039715 534 DLMQQRGWRPNNL---------TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 534 ~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
+.-+... |... .+..- +...+...+....++|-.+....+..+|+.++.+|+-+|--.|.+++|.+.|
T Consensus 377 ~~Wi~~~--p~y~~l~~a~~~~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 377 DKWIRNK--PKYVHLVSAGENEDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHhC--ccchhccccCccccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7665432 1100 00000 1112222344556666666656566688899999999999999999999999
Q ss_pred HcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 605 EGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 605 ~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.+ ..+|+ ..+||-|+..+..-.+.++|+.+|.+++++.|....+...||-.|...|.++||.+
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 965 56775 57899999999999999999999999999999999999999999999999999998
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.81 E-value=6.1e-05 Score=80.02 Aligned_cols=451 Identities=12% Similarity=0.121 Sum_probs=261.7
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC---CCcchHHHHHHHHH
Q 039715 57 HSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE---RNTISFVTTIQGYT 133 (805)
Q Consensus 57 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 133 (805)
..|...++.| ..+.+..+..+...+++..+ -...+.....-.+...|+-++|......-.. +..++|..+.-.+-
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~-eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKKFP-EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHhCC-ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 4456666655 46778888888888888433 2333333333345567899999887765543 45678999998888
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHH
Q 039715 134 VSSQFVEAVGLFSTLHREGHELNPF-AFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFAR 212 (805)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 212 (805)
...++++|++.|..... +.||.. .+.-+--.=++.++++.......+..+.. +.....|..+.-++.-.|+
T Consensus 87 ~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~----- 158 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGE----- 158 (700)
T ss_pred hhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHH-----
Confidence 89999999999999988 567654 44333333356667766666665555543 2333455555555555454
Q ss_pred HHHhhhccccHHHHHHHHHHHHHCC-CCCChhhHHHHH------HHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 039715 213 KVFDGLFNDCFEEALNFFSQMRAVG-FKPNNFTFAFVL------KACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLD 285 (805)
Q Consensus 213 ~~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 285 (805)
+..|..++++..+.. -.|+...|.... ......|.++.+.+.+...... +......--.-.+
T Consensus 159 ----------y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~ 227 (700)
T KOG1156|consen 159 ----------YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKAD 227 (700)
T ss_pred ----------HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHH
Confidence 445555555555443 245554444332 2334566666666555443222 1112223334556
Q ss_pred HHHcCCChHHHHHHHhhCCCCCcc--cHH-HHHHHHHhCCChhHHH-HHHHHHHHCC---CCCChhHHHHHHHHHhccCC
Q 039715 286 LYTKSGEISNARRIFEEMPKKDVI--PWS-FMIARYAQTDLSIDAV-ELFCRMRQAF---VAPNQFTFVSVLQACATMEG 358 (805)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~~~~~--~~~-~li~~~~~~g~~~~A~-~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~ 358 (805)
.+.+.+++++|..++..+..+++. -|+ .+..++.+-.+.-+++ .+|....+.- -.|-.... +......-
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----svl~~eel 303 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL----SVLNGEEL 303 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH----HHhCcchh
Confidence 788889999999999988765443 333 3334443333333444 5555554321 11111111 11111222
Q ss_pred chHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHH----HHHHHhcC--------------CCCChhhHH--HHHHH
Q 039715 359 LDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMEN----SVELFAES--------------PKRNHVTWN--TMIVG 418 (805)
Q Consensus 359 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~----A~~~f~~~--------------~~~~~~~~~--~li~~ 418 (805)
.+.....+....+.|+++ ++..+...|-.-...+- +..+...+ ..|....|+ -++..
T Consensus 304 ~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred HHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 233445555666666544 33334444422111110 11111111 123444454 46778
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 039715 419 YVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITD 497 (805)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 497 (805)
|-..|+++.|..+++..+.. .|+.+ -|..=.+.+.+.|.++.|..++....+.. .+|..+-.--+....+.+++++
T Consensus 381 ~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHH
Confidence 88889999999999888764 56555 44445577888889999988888888776 4566666566777778888888
Q ss_pred HHHHhhhcCCCC--Hh--------HHHHH--HHHHHhCCChHHHHHHHHHHHH
Q 039715 498 ARLVFDMMNDWN--EV--------SWNAM--ISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 498 A~~~~~~~~~~~--~~--------~~~~l--i~~~~~~g~~~~A~~l~~~m~~ 538 (805)
|.++.......+ .+ .|-.+ ..+|.+.|++.+|++-|.....
T Consensus 458 A~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 458 AEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 888876655321 11 34443 3456677777777766665543
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.80 E-value=1.2e-06 Score=80.98 Aligned_cols=191 Identities=12% Similarity=0.036 Sum_probs=130.1
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 530 (805)
|...|+...|+.-++.+++.. +.+..++..+...|.+.|..+.|.+.|++.. ..+-...|....-+|.+|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 333333333333333333333 3345566677777777777777777777665 235566777777788888888888
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 039715 531 KVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGIP 608 (805)
Q Consensus 531 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~ 608 (805)
..|++....-.-|. ..||..+.-+..+.|+.+.|..+|++.++ +.|+ ....-.|.....+.|++-+|..+++...
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 88888876422222 34777777666788888888888888773 4553 4567778888888888888888887652
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 609 --FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 609 --~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
..++..+.--.+..-...||.+.+-+.-.++-...|...+
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 2356655555566667788888888888888888886544
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=1.2e-05 Score=87.63 Aligned_cols=124 Identities=14% Similarity=0.181 Sum_probs=94.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHH
Q 039715 513 WNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSL 590 (805)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 590 (805)
|.-+...|...|++++|+++.++.++ ..|..+ .|..-...+-+.|++++|.+.++... .+++ |...-+-.+..
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHHH
Confidence 34556778889999999999999998 567744 67777888999999999999998887 4565 44555566788
Q ss_pred HHhcCCHHHHHHHHHcCC---CCC--C----HHHH--HHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 591 LGRAGHLDKAAKLIEGIP---FQP--S----VMIW--RALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~~---~~p--~----~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
+.|+|++++|.+++.... ..| | ..+| ..-+.+|.+.|++..|+.-+..+.+
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 889999999999877552 111 1 1245 3445668999999999988877765
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.76 E-value=7.7e-06 Score=79.76 Aligned_cols=279 Identities=12% Similarity=0.138 Sum_probs=181.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHH---HHHHHcCChHHHHHHHHHHhhcCCCCChhhHH-HHHHHHhccC
Q 039715 383 ALMDVYAKCGRMENSVELFAESPKRNHVTWNTMI---VGYVQLGEVGKAMIMFSKMLEEQVPATEVTYS-SVLRACASLA 458 (805)
Q Consensus 383 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~ 458 (805)
-|...+.-.|++.+|+.-|....+-|+..|-++. ..|...|+...|+.-|.+.++ .+||...-. .-...+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 3455555667777777777777666666555543 467777777777777777665 356643211 1123355677
Q ss_pred CchhHHHHHHHHHHcCCCCc--Hh------------HHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHH
Q 039715 459 ALEPGMQVHCLTVKANYDMD--VV------------VANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYS 521 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~--~~------------~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 521 (805)
.++.|..=|..+++...... .. .....+.-+.-.|+...|+.....+.+ .|...+..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 77777777777776543211 11 111223345566888888888777763 37777777788888
Q ss_pred hCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChH----HHHHH---H-----
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIE----HYTSM---V----- 588 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~l---i----- 588 (805)
..|.+..|+.=++..-+ +.. +..++.-+-..+...|+.+.++...++.+ .+.||.. +|..| +
T Consensus 201 ~~~e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred hcCcHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHH
Confidence 88888888887777666 333 33455566666777888888877766666 5667642 22222 1
Q ss_pred -HHHHhcCCHHHHHHHHHcC-CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 589 -SLLGRAGHLDKAAKLIEGI-PFQPSV-----MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 589 -~~~~~~g~~~eA~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
....+.+++.++++-.++. ..+|.. .++..+-..++..|++-+|++...++++++|+|..++.--+.+|....
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 1233456666666655543 344441 124444455677889999999999999999999999999999999999
Q ss_pred ChHHHhh
Q 039715 662 SWEKAAS 668 (805)
Q Consensus 662 ~~~~a~~ 668 (805)
.+|+|..
T Consensus 356 ~YD~AI~ 362 (504)
T KOG0624|consen 356 MYDDAIH 362 (504)
T ss_pred HHHHHHH
Confidence 9999877
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=0.00014 Score=79.02 Aligned_cols=331 Identities=14% Similarity=0.106 Sum_probs=176.1
Q ss_pred CChhhHHHHHHH--hhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC-----------C
Q 039715 54 FNSHSYATSLQS--CIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE-----------R 120 (805)
Q Consensus 54 ~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-----------~ 120 (805)
.|+.|-..++.. |..-|+.+.|.+-...+ .+-.+|..+.+++.+..+++-|.-.+..|.. .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 344444444432 44455665555443333 2345666777777776666666665555532 0
Q ss_pred Cc-chHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHH
Q 039715 121 NT-ISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALI 199 (805)
Q Consensus 121 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 199 (805)
|. ..=......-..-|..++|..+|++-.+ |..|=+.|-..|.+++|.++-+.--+..+. .+|-.-.
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA 865 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYA 865 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHH
Confidence 11 1111111112345666666666666655 233444455666666666554432222211 1222223
Q ss_pred HHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCC--------CCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q 039715 200 DAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVG--------FKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKT 271 (805)
Q Consensus 200 ~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 271 (805)
.-+-..++++.|.+.|++... .|+++++-+.+.. -.-|...|.....-.-..|+.+.|..+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~----hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV----HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC----hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 333345666677776665421 2333333222210 112333444444445567888888888776543
Q ss_pred CCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 039715 272 CYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQ 351 (805)
Q Consensus 272 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 351 (805)
|-.++...|-.|+.++|.++-++- .|......|.+-|-..|++.+|+.+|.+.+. |...|+
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR 1001 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR 1001 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH
Confidence 346677777789999998887764 4666777888999999999999999987653 445555
Q ss_pred HHhccCC---------------chHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC-----------
Q 039715 352 ACATMEG---------------LDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESP----------- 405 (805)
Q Consensus 352 ~~~~~~~---------------~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----------- 405 (805)
.|-..+- .-.|-..|+ +.|. -....+..|-|.|.+.+|+++-=+-.
T Consensus 1002 lcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1002 LCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 4433221 111122222 1121 11234556788888888876532111
Q ss_pred ---CCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 039715 406 ---KRNHVTWNTMIVGYVQLGEVGKAMIMFSK 434 (805)
Q Consensus 406 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 434 (805)
..|+...+--..-|..+.++++|..++-.
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12444455555556666667766665543
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=5.5e-06 Score=85.98 Aligned_cols=207 Identities=11% Similarity=0.082 Sum_probs=104.5
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHh----------HHHHHH
Q 039715 448 SSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEV----------SWNAMI 517 (805)
Q Consensus 448 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li 517 (805)
..+.++..+..+++.+.+-+...+... .+..-++....+|...|.+.+....-+...+..-. +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555555666666666666666554 45555666666677666666655554443322111 222244
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHhcCC
Q 039715 518 SGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIE-HYTSMVSLLGRAGH 596 (805)
Q Consensus 518 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~ 596 (805)
.+|.+.++++.|+..|++.+..-..||..+ +....+++........ -+.|... -...=+.-+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 456666777777777777665544443221 1112222222222211 1223221 01111334445555
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 597 LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 597 ~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.+|+..+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544 2233 334555555555555666666655666666666555555555555555555555554
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.70 E-value=3.9e-07 Score=82.34 Aligned_cols=124 Identities=10% Similarity=-0.006 Sum_probs=101.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-
Q 039715 530 LKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI- 607 (805)
Q Consensus 530 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~- 607 (805)
..+|++.++ +.|+. +.....++...|++++|...|+... .+.| +...|..++.++.+.|++++|...|++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 346666666 56664 4456667888999999999999887 4556 5678888999999999999999999876
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 608 PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 608 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
...| +...|..++.++...|+.++|+..+++++++.|+++..+...+++....
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 3344 5678999999999999999999999999999999999999998876543
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.69 E-value=3.3e-07 Score=92.73 Aligned_cols=236 Identities=11% Similarity=0.008 Sum_probs=107.6
Q ss_pred HHhcCChHHHHHHHhcCCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhH
Q 039715 388 YAKCGRMENSVELFAESPKR----NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPG 463 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 463 (805)
+.-.|.+..++.-.+ .... +.....-+.++|...|+++.++. ++.... .|.......+...+....+-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 445677777775444 2111 22344556677777777665443 332222 45544444443333332222222
Q ss_pred HHHHHHHHHcCCC-CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 039715 464 MQVHCLTVKANYD-MDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR 542 (805)
Q Consensus 464 ~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 542 (805)
..-+......... .+..+......+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+ +.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 2222222111111 22233333334455566666666665544 2333444445555555555555555555554 22
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCCHHHHHHHH
Q 039715 543 PNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP--FQPSVMIWRALL 620 (805)
Q Consensus 543 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~l~ 620 (805)
.| .+...+..++ +..+.-.+.+.+|..+|+++. +.+++.+.+.+.
T Consensus 162 eD-~~l~qLa~aw--------------------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 162 ED-SILTQLAEAW--------------------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp CC-HHHHHHHHHH--------------------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred Cc-HHHHHHHHHH--------------------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 22 2222222222 222211223444555544441 234455566666
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
.+....|++++|+..++++++.+|+++.+..+++-+....|+..+
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 666666666666666666666666666666666666666666633
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=0.00014 Score=78.94 Aligned_cols=228 Identities=15% Similarity=0.156 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 039715 343 QFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQL 422 (805)
Q Consensus 343 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 422 (805)
...|.-...-....|+.+.|..+|..... |-+++...|-.|+.++|-++-++- .|......+...|-..
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~ 980 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYEND 980 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhh
Confidence 34444444455566777777777665543 345666666677777777776553 3555666677777777
Q ss_pred CChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCch---------------hHHHHHHHHHHcCCCCcHhHHHHHHH
Q 039715 423 GEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALE---------------PGMQVHCLTVKANYDMDVVVANALID 487 (805)
Q Consensus 423 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~---------------~a~~~~~~~~~~~~~~~~~~~~~li~ 487 (805)
|++.+|+..|.+.+ +|...|+.|-..+--+ .|-.+|+ +.|.. ..--+.
T Consensus 981 g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVm 1043 (1416)
T KOG3617|consen 981 GDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVM 1043 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHH
Confidence 88888887777664 3444444443322111 1112221 12211 122345
Q ss_pred HHHhcCCHHHHHHHhhhcCC--------------CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 488 MYAKCGSITDARLVFDMMND--------------WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
.|-|.|.+.+|+++--+-.+ .|+...+.-..-|..+.++++|..++-...+ |...+.
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alq 1114 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQ 1114 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHH
Confidence 68888888888776332221 2566666666777888889999888776654 445555
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGIP 608 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~ 608 (805)
.|...| +.-..++-+.|.-.-.-.|+ ......+.+.+.++|.+..|.+-|.+..
T Consensus 1115 lC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1115 LCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 665543 23333333333211111222 2456667788888888888888877664
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=2.5e-05 Score=83.48 Aligned_cols=249 Identities=11% Similarity=-0.021 Sum_probs=146.4
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhc----cCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 039715 416 IVGYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACAS----LAALEPGMQVHCLTVKANYDMDVVVANALIDMYA 490 (805)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 490 (805)
...+...|++++|.+++++..+.. |+.. .+.. ...+.. .+..+.+.+.... .....+........+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHH
Confidence 334566788888888888877652 3332 3221 112222 3334444444333 11112223344556667788
Q ss_pred hcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHcCCCHHHH
Q 039715 491 KCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW-RPNN--LTFVGVLSACSNGGLLEQG 564 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a 564 (805)
..|++++|.+.+++..+ .+...+..+...|...|++++|+..+++...... .|+. ..+..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 88899999888888763 3566778888888888999999998888877421 1222 2344566677888999999
Q ss_pred HHHHHHHHHhcCCCCChHHH-H--HHHHHHHhcCCHHHHHHH---HHc---C-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039715 565 EAYFKSMVANYGIEPCIEHY-T--SMVSLLGRAGHLDKAAKL---IEG---I-PFQPSVMIWRALLGACIIHNNVEIGRL 634 (805)
Q Consensus 565 ~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~eA~~~---~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~a~~ 634 (805)
..+++.........+..... + .+...+...|..+.+.++ ... . +.............++...|+.++|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 99888875321111111111 1 333344445533333333 111 1 111112223355566778889999998
Q ss_pred HHHHHhccCC---------CCcchHHHHHHHHHhcCChHHHhh
Q 039715 635 SAQHILDFEP---------EDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 635 ~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.++.+....- .........+.++...|++++|.+
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~ 328 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALE 328 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHH
Confidence 8887765321 134556778889999999999977
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=2.3e-06 Score=86.65 Aligned_cols=218 Identities=9% Similarity=0.073 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhH-HHHHHHHhccC
Q 039715 380 VSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTY-SSVLRACASLA 458 (805)
Q Consensus 380 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~ 458 (805)
....+.++|.-.|+.+.++.-...-..|.......+...+...++-+.++.-+++.......++..++ ......+...|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 34455666777777776655554444555555544443333334455666666655544333222222 22334456678
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC--CHhH---HHHHHHHHHhCCChHHHHHHH
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW--NEVS---WNAMISGYSMHGLSAEVLKVF 533 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~---~~~li~~~~~~g~~~~A~~l~ 533 (805)
+++.|.+++... .+.......+..|.+.++++.|.+.++.|.+. |... ..+.+..+...+++.+|..+|
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 888887765432 35666677899999999999999999999854 3221 222233333345688999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCH-HHHHHHHHcC
Q 039715 534 DLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHL-DKAAKLIEGI 607 (805)
Q Consensus 534 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~-~eA~~~~~~~ 607 (805)
+++.+. ..++..+.+.+..+....|++++|..++.+.. ...| ++.+...++-+..-.|+. +.+.+++.++
T Consensus 191 ~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al---~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 191 EELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL---EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC---CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 997664 46777788888888888899999988877765 3344 344555555555555555 4455555554
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=7.5e-05 Score=90.71 Aligned_cols=361 Identities=7% Similarity=-0.079 Sum_probs=202.1
Q ss_pred HHHHHHcCCChHHHHHHHhhCCCCCccc--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCch
Q 039715 283 LLDLYTKSGEISNARRIFEEMPKKDVIP--WSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLD 360 (805)
Q Consensus 283 li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 360 (805)
....|...|++.+|.............. .......+...|+++.+...++.+.......+..........+...++++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3444666777777777666655432211 11122344556777776666665522111112222233334445677888
Q ss_pred HHHHHHHHHHHhCCC------cc--HHHHHHHHHHHHhcCChHHHHHHHhcCC----CCCh----hhHHHHHHHHHHcCC
Q 039715 361 LGNQIHSLVVRVGLL------SD--VFVSNALMDVYAKCGRMENSVELFAESP----KRNH----VTWNTMIVGYVQLGE 424 (805)
Q Consensus 361 ~a~~~~~~~~~~g~~------~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~----~~~~~li~~~~~~g~ 424 (805)
++...+..+.+.--. +. ......+...+...|++++|...+++.. ..+. ..++.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 888887776543111 11 1222333455667888888888776632 2221 234556666777888
Q ss_pred hHHHHHHHHHHhhcCCC---CC--hhhHHHHHHHHhccCCchhHHHHHHHHHHc----CCC--C-cHhHHHHHHHHHHhc
Q 039715 425 VGKAMIMFSKMLEEQVP---AT--EVTYSSVLRACASLAALEPGMQVHCLTVKA----NYD--M-DVVVANALIDMYAKC 492 (805)
Q Consensus 425 ~~~A~~~~~~m~~~g~~---p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~y~~~ 492 (805)
+++|...+.+.....-. +. ..++..+...+...|+++.|...+...... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 88888888887642111 11 123445556677788888888877765542 211 1 223344556667777
Q ss_pred CCHHHHHHHhhhcCC------C--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHcC
Q 039715 493 GSITDARLVFDMMND------W--NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR-PNNLTF-----VGVLSACSNG 558 (805)
Q Consensus 493 g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~-----~~ll~a~~~~ 558 (805)
|++++|...+++... + ....+..+...+...|++++|...+++.....-. .....+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 888888877776532 1 1234444566777788888888888777542111 011111 0112333456
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC-HHHHHHHHHHHHHcC
Q 039715 559 GLLEQGEAYFKSMVANYGIEPC---IEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPS-VMIWRALLGACIIHN 627 (805)
Q Consensus 559 g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g 627 (805)
|..+.+.+++...... ..... ...+..+..++...|+.++|...+++. ...++ ..+...+..++...|
T Consensus 667 g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 667 GDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 7888887776554321 00000 011345566777788888888777654 11112 234555666677888
Q ss_pred CHHHHHHHHHHHhccCC
Q 039715 628 NVEIGRLSAQHILDFEP 644 (805)
Q Consensus 628 ~~~~a~~~~~~~~~~~p 644 (805)
+.++|...+++++++..
T Consensus 746 ~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 746 RKSEAQRVLLEALKLAN 762 (903)
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 88888888888887654
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.63 E-value=9.2e-05 Score=79.12 Aligned_cols=252 Identities=13% Similarity=0.076 Sum_probs=117.7
Q ss_pred hccCCchHHHHHHHHHHHhCCCccHHHHHH---HHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHH
Q 039715 354 ATMEGLDLGNQIHSLVVRVGLLSDVFVSNA---LMDVYAKCGRMENSVELFAESPKRN---HVTWNTMIVGYVQLGEVGK 427 (805)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~ 427 (805)
...|+++.+..+++.+.+.. +.|...+.. +.......|..+.+.+.++.....+ ...+..+...+...|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 44556666666666665543 222222221 1111112344444444444322211 1223334445666666666
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC
Q 039715 428 AMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND 507 (805)
Q Consensus 428 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 507 (805)
|...+++..+.. |+ +...+..+...|...|++++|...+++...
T Consensus 133 A~~~~~~al~~~--p~----------------------------------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~ 176 (355)
T cd05804 133 AEEAARRALELN--PD----------------------------------DAWAVHAVAHVLEMQGRFKEGIAFMESWRD 176 (355)
T ss_pred HHHHHHHHHhhC--CC----------------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhh
Confidence 666666665532 22 233344455555555555555555554432
Q ss_pred C-----C--HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHH-H--HHHHHHHcCCCHHHHHHHHHHHHHhc-
Q 039715 508 W-----N--EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTF-V--GVLSACSNGGLLEQGEAYFKSMVANY- 575 (805)
Q Consensus 508 ~-----~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~-~--~ll~a~~~~g~~~~a~~~~~~m~~~~- 575 (805)
. + ...|..+...+...|++++|+.+|++.......+. .... . .++.-+...|..+.+.+. +.+....
T Consensus 177 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~ 255 (355)
T cd05804 177 TWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAA 255 (355)
T ss_pred ccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHH
Confidence 1 1 12344556666666777777777766644211111 1111 1 222223334433333332 1111100
Q ss_pred -CCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCC---C------HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 576 -GIEP--CIEHYTSMVSLLGRAGHLDKAAKLIEGIP--FQP---S------VMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 576 -~~~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p---~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
.... ........+..+...|+.++|..+++.+. .+. . ....-....++...|+.++|.+.+..+++
T Consensus 256 ~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 256 WHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1010 11111245566677788888888776551 011 1 11222223346678899999988888876
Q ss_pred cC
Q 039715 642 FE 643 (805)
Q Consensus 642 ~~ 643 (805)
+-
T Consensus 336 ~a 337 (355)
T cd05804 336 DL 337 (355)
T ss_pred HH
Confidence 54
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=3.2e-05 Score=80.50 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=120.1
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCC--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCH
Q 039715 485 LIDMYAKCGSITDARLVFDMMNDW--NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLL 561 (805)
Q Consensus 485 li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 561 (805)
+...|.+.++++.|...|.+.... +... ..+....++++...+...- +.|+.. ....-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 455788889999999999886532 2111 2233445566665555554 455543 222335567889999
Q ss_pred HHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039715 562 EQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQH 638 (805)
Q Consensus 562 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 638 (805)
..|...|.++++. .| |...|+...-.|.+.|.+.+|++=.+.. ...|+ ...|..-+.++....+++.|.+.|++
T Consensus 375 ~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999854 46 6788999999999999999998765543 34555 34677777778888899999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhc
Q 039715 639 ILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 639 ~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
.++++|++......+...+..+
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999888888877764
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=4.3e-05 Score=92.79 Aligned_cols=349 Identities=11% Similarity=0.022 Sum_probs=216.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHH----HHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 039715 314 MIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVL----QACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYA 389 (805)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 389 (805)
....+...|++.+|+...... +|......++ ......|+++.....+..+.......+..........+.
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAA------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHC------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 344566677777776644433 1222222222 223445666666666554421111122223344555667
Q ss_pred hcCChHHHHHHHhcCC----CC----C--hh--hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCh----hhHHHHHHH
Q 039715 390 KCGRMENSVELFAESP----KR----N--HV--TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE----VTYSSVLRA 453 (805)
Q Consensus 390 ~~g~~~~A~~~f~~~~----~~----~--~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a 453 (805)
..|++++|...++... .. + .. ....+...+...|++++|...+++....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 7899999888876532 11 1 11 1122334566799999999999998763212221 234455566
Q ss_pred HhccCCchhHHHHHHHHHHc----CCC-CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----------CHhHHHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKA----NYD-MDVVVANALIDMYAKCGSITDARLVFDMMNDW-----------NEVSWNAMI 517 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li 517 (805)
+...|+++.|...+...... |.. ........+...+...|++++|...+++.... ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 77899999999998877653 211 12345566777889999999999988765421 122345566
Q ss_pred HHHHhCCChHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHH-----HHHH
Q 039715 518 SGYSMHGLSAEVLKVFDLMQQRG--WRPN--NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHY-----TSMV 588 (805)
Q Consensus 518 ~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li 588 (805)
..+...|++++|...+++..... ..+. ...+..+.......|+.++|...++.+............+ ....
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 67778899999999999876531 1222 2234445566778999999999998876431111111111 1122
Q ss_pred HHHHhcCCHHHHHHHHHcCCCC--CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CCcchHHHHHHH
Q 039715 589 SLLGRAGHLDKAAKLIEGIPFQ--PSV----MIWRALLGACIIHNNVEIGRLSAQHILDFEP------EDEATHVLLSNI 656 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~~~~--p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~ 656 (805)
..+...|+.++|.+++...... ... ..+..+..++...|+.++|...++++++... +...++..++.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 4455689999999998765311 111 1245666778889999999999999987522 233467788999
Q ss_pred HHhcCChHHHhh
Q 039715 657 YAMARSWEKAAS 668 (805)
Q Consensus 657 ~~~~g~~~~a~~ 668 (805)
|...|+.++|..
T Consensus 741 ~~~~G~~~~A~~ 752 (903)
T PRK04841 741 YWQQGRKSEAQR 752 (903)
T ss_pred HHHcCCHHHHHH
Confidence 999999999987
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=0.00013 Score=71.55 Aligned_cols=193 Identities=10% Similarity=0.051 Sum_probs=126.6
Q ss_pred hccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHH
Q 039715 455 ASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLK 531 (805)
Q Consensus 455 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 531 (805)
...|+...++.....+++.. +.|...+..-.++|...|++..|+.-+.... ..+....--+-..+-..|+.+.++.
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555555555555443 4566666666777777777777766554443 3455566666666677777777777
Q ss_pred HHHHHHHcCCCCCHHH----HHH-------HHH--HHHcCCCHHHHHHHHHHHHHhcCCCCCh-----HHHHHHHHHHHh
Q 039715 532 VFDLMQQRGWRPNNLT----FVG-------VLS--ACSNGGLLEQGEAYFKSMVANYGIEPCI-----EHYTSMVSLLGR 593 (805)
Q Consensus 532 l~~~m~~~g~~p~~~t----~~~-------ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~ 593 (805)
..++-++ +.||... |-. +-+ .....+++.++.+-.+...+ ..|.. ..+..+-..+..
T Consensus 245 ~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 245 EIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccc
Confidence 7777776 5676432 111 111 23455677777777777663 34541 233444566778
Q ss_pred cCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 594 AGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 594 ~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
.|++-||+....++ .+.|| +.++.--..+|.....++.|+.-|+++.+.+|++..+-..+
T Consensus 320 d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 89999999888765 45665 66787778889889999999999999999999887665444
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.51 E-value=0.0024 Score=66.85 Aligned_cols=150 Identities=14% Similarity=0.089 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHhh
Q 039715 425 VGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDM-DVVVANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 425 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
.+.....++++...-..--..+|...++.-.+..-++.|+.+|.++.+.+..+ ++.++++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 34444555555443222222345556666666666666777777666655444 66666666666654 55566666665
Q ss_pred hcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 039715 504 MMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL--TFVGVLSACSNGGLLEQGEAYFKSMVANY 575 (805)
Q Consensus 504 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 575 (805)
--.++ +..--+..+.-+...++-..|..+|++.+..++.|+.. .|..+|.-=+.-|++....++-+++...+
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 44422 22333344444455555555666666665554444432 45555555555555555555555554443
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=8.2e-05 Score=71.36 Aligned_cols=347 Identities=14% Similarity=0.093 Sum_probs=186.9
Q ss_pred CCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC--CcccHH-HH
Q 039715 238 FKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK--DVIPWS-FM 314 (805)
Q Consensus 238 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~-~l 314 (805)
+.....-+.+++..+.+..++..+.+++..-.+.. +.+..-.+.|...|-...++..|...++++... ...-|. --
T Consensus 6 ~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 6 AQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred ccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 33334446666666677777777777776665553 224455566667777777788888777776542 111222 22
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHH--HhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 039715 315 IARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQA--CATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCG 392 (805)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 392 (805)
...+.+.+.+.+|+.+...|.+. |+...-..-+.+ .-+.+++-.++.+.++.... .+..+.+.......+.|
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeeccc
Confidence 35566677777888777777542 222111111222 12345555555555544321 23334444444555666
Q ss_pred ChHHHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhh----HHHHHHHHhccCCchhHH
Q 039715 393 RMENSVELFAESPK----RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVT----YSSVLRACASLAALEPGM 464 (805)
Q Consensus 393 ~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~ 464 (805)
+++.|.+-|+...+ .....||.-+..| +.|+++.|+++..++++.|++..... -.-.+. ...+..-.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~ 233 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTL 233 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchH
Confidence 77777766665443 2334555444333 45666677777777666665422110 000000 00000000
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 039715 465 QVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW-----NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR 539 (805)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 539 (805)
.++... -+..+|.-...+.+.|+.+.|.+.+..|+.+ |++|...+.-.- ..+++.+..+-++-+++.
T Consensus 234 ~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 VLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence 011100 0122333344577889999999999999854 777777664332 245566666666666664
Q ss_pred CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 540 GWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI-EPCIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 540 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
.| -..||..++-.|++..-++.|-.++-+-... .. -.+...|+.|=.+..-.-..++|.+-++.+
T Consensus 306 --nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 306 --NPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred --CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44 4569999999999998888888775431100 00 012233333322233455777777666544
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=8.9e-06 Score=85.23 Aligned_cols=214 Identities=14% Similarity=0.120 Sum_probs=147.3
Q ss_pred hccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHH
Q 039715 354 ATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMI 430 (805)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 430 (805)
.+.|++.+|.-.|+..++.+ +.+...|..|.......++-..|+..+++..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566666666666666655 45566677777777777776666666665433 355666677777888888888888
Q ss_pred HHHHHhhcCCC--------CChhhHHHHHHHHhccCCchhHHHHHHHH-HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 039715 431 MFSKMLEEQVP--------ATEVTYSSVLRACASLAALEPGMQVHCLT-VKANYDMDVVVANALIDMYAKCGSITDARLV 501 (805)
Q Consensus 431 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 501 (805)
.|+.-+....+ ++..+-.. ........+....++|-.+ ...+..+|+.+...|.-.|--.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88877553210 00000000 0111111222333444333 4455558888999999999999999999999
Q ss_pred hhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 039715 502 FDMMND--W-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMV 572 (805)
Q Consensus 502 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 572 (805)
|+.... | |...||.|...++...+.++|++.|++.++ ++|+-+ ....|.-+|...|.+++|..+|=.++
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 998873 3 788999999999999999999999999999 889865 44455567999999999999876655
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00021 Score=68.64 Aligned_cols=236 Identities=13% Similarity=0.052 Sum_probs=134.3
Q ss_pred cCCChHHHHHHHhhCCC-CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHH
Q 039715 289 KSGEISNARRIFEEMPK-KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHS 367 (805)
Q Consensus 289 ~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 367 (805)
..+++..+..+.++.+. .+..+.+...-...+.|++++|++-|+...+-+---....|+..+..+ +.++...|.+...
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHH
Confidence 45777778888888773 555566666666677888888888888877654333445566555443 5577888888888
Q ss_pred HHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHhh-cC
Q 039715 368 LVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKR-------NHVTWNTMIVGYVQLGEVGKAMIMFSKMLE-EQ 439 (805)
Q Consensus 368 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g 439 (805)
++++.|+...+...- |..-+... .+.+..+ =+..+|.-...+.+.|+++.|.+.+..|.- ..
T Consensus 203 EIieRG~r~HPElgI---------Gm~tegiD-vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE 272 (459)
T KOG4340|consen 203 EIIERGIRQHPELGI---------GMTTEGID-VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE 272 (459)
T ss_pred HHHHhhhhcCCccCc---------cceeccCc-hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc
Confidence 888777532211100 00000000 0000000 012344444556677778878777777742 22
Q ss_pred CCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----CHhHHH
Q 039715 440 VPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW-----NEVSWN 514 (805)
Q Consensus 440 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~ 514 (805)
...|.+|...+.-.- -.+++..+..-+..+...+. ....++..++-.|||..-++-|-.++.+-... +...|+
T Consensus 273 ~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~ 350 (459)
T KOG4340|consen 273 EELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD 350 (459)
T ss_pred ccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH
Confidence 345666665543211 12345556666666666643 34567777888888888888888888765432 344444
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQ 537 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~ 537 (805)
.+=..-...-..++|++-++.+.
T Consensus 351 LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 351 LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Confidence 33332233445666665555443
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=8.5e-06 Score=81.24 Aligned_cols=171 Identities=13% Similarity=0.040 Sum_probs=111.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---C---HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH----H
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMNDW---N---EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL----T 547 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 547 (805)
....+..++..|.+.|++++|...|+++... + ...|..+..+|...|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 4556677777788888888888888876532 2 136677778888888888888888888873 44322 3
Q ss_pred HHHHHHHHHcC--------CCHHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHH
Q 039715 548 FVGVLSACSNG--------GLLEQGEAYFKSMVANYGIEPCIE-HYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRA 618 (805)
Q Consensus 548 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ 618 (805)
+..+..++... |+.++|.+.|+.+... .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 44444455443 6677788888877744 34322 22211111 0011100 001224
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCChHHHhh
Q 039715 619 LLGACIIHNNVEIGRLSAQHILDFEPED---EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...+...|++++|+..++++++..|++ +..+..++.+|...|++++|..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5566788899999999999999987765 4688899999999999999866
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=2.1e-07 Score=59.67 Aligned_cols=33 Identities=39% Similarity=0.580 Sum_probs=24.8
Q ss_pred CCCCCcchHHHHHHHHHhCCCchHHHHHhccCC
Q 039715 86 GNCLDLFATNVLLNVYVKLNRLPDATKLFDEMP 118 (805)
Q Consensus 86 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~ 118 (805)
|+.||+++||.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777774
No 112
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=3.1e-05 Score=79.59 Aligned_cols=196 Identities=12% Similarity=0.039 Sum_probs=130.6
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCCh--HHHHHH
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG-SITDARLVFDMMND---WNEVSWNAMISGYSMHGLS--AEVLKV 532 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l 532 (805)
..+.|......+++.+ +.+..+|+....++.+.| ++++++..++++.+ ++..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3444444444444433 223344544444555555 46777777777653 3556677666556666653 677888
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhc---CCH----HHHHHH
Q 039715 533 FDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRA---GHL----DKAAKL 603 (805)
Q Consensus 533 ~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~---g~~----~eA~~~ 603 (805)
++++++ ..| |..+|.....++.+.|+++++++.++++++. .| +...|+....++.+. |.. +++.++
T Consensus 131 ~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 131 TRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 888887 455 4557777777778888888888888888743 34 455666665555444 222 456666
Q ss_pred HH-cCCCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 604 IE-GIPFQP-SVMIWRALLGACIIH----NNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 604 ~~-~~~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
.. .+...| |...|+.+.+.+..+ ++..+|...+.+++..+|+++.++..|+++|...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 63 444455 567899999998874 3457799999999999999999999999999863
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.43 E-value=4.1e-06 Score=79.46 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHH
Q 039715 542 RPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI--PFQPSVMIWRAL 619 (805)
Q Consensus 542 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~l 619 (805)
.|+......+-.++...|+-+....+....... -..+......++....+.|++.+|...|.+. +-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 454333344555566667766666666554422 2224455555777777777777777777765 234566777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 620 LGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 620 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.+|.+.|+.++|...+.+++++.|+++.++.+|+..|.-.|++++|..
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence 7777777777777777777777777777777777777777777777776
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=2.4e-06 Score=77.22 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 566 AYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 566 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
.+++... .+.|+ .+..+...+...|++++|...|+.. ...| +...|..++.++...|++++|+..++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455554 34555 3567888999999999999999976 3445 67799999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHhh
Q 039715 644 PEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 644 p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|+++.++..+|.+|...|++++|..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999988
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.40 E-value=1.7e-05 Score=79.11 Aligned_cols=182 Identities=12% Similarity=0.027 Sum_probs=129.1
Q ss_pred ChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CH---hHHH
Q 039715 443 TEVTYSSVLRACASLAALEPGMQVHCLTVKANYDM--DVVVANALIDMYAKCGSITDARLVFDMMNDW---NE---VSWN 514 (805)
Q Consensus 443 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~---~~~~ 514 (805)
....+..+...+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...|+++.+. +. ..|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 34467777888999999999999999998865321 2246788899999999999999999998643 22 2566
Q ss_pred HHHHHHHhC--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHH
Q 039715 515 AMISGYSMH--------GLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTS 586 (805)
Q Consensus 515 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 586 (805)
.+..++.+. |++++|++.|+++... .|+.......+..... .. .. . ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~---~~------~~-~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY---LR------NR-L--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH---HH------HH-H--------HHHHHH
Confidence 666777655 7899999999999984 5664322111111000 00 00 0 011235
Q ss_pred HHHHHHhcCCHHHHHHHHHcC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI----PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
+...|.+.|++++|...+++. |..|. ...|..++.++...|++++|...++.+..-.|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 677889999999999988865 32343 46889999999999999999998888776555
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.39 E-value=3.5e-05 Score=73.64 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=110.8
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHH
Q 039715 486 IDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQG 564 (805)
Q Consensus 486 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 564 (805)
+-+|.+.|+++....-.+.+..+. ..|...++.++++..+++.++. .| |...|..+...+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 446777788777654443322111 0122356677888888887774 45 455777788888889999999
Q ss_pred HHHHHHHHHhcCCCC-ChHHHHHHHHHH-HhcCC--HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039715 565 EAYFKSMVANYGIEP-CIEHYTSMVSLL-GRAGH--LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQH 638 (805)
Q Consensus 565 ~~~~~~m~~~~~~~p-~~~~~~~li~~~-~~~g~--~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 638 (805)
...|++.. .+.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++
T Consensus 93 ~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99988877 3456 567788888764 67777 58899988876 3445 567888888889999999999999999
Q ss_pred HhccCCCCcchHHHH
Q 039715 639 ILDFEPEDEATHVLL 653 (805)
Q Consensus 639 ~~~~~p~~~~~~~~l 653 (805)
++++.|.+..-+..+
T Consensus 170 aL~l~~~~~~r~~~i 184 (198)
T PRK10370 170 VLDLNSPRVNRTQLV 184 (198)
T ss_pred HHhhCCCCccHHHHH
Confidence 999888776655444
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.37 E-value=5.8e-07 Score=57.64 Aligned_cols=33 Identities=27% Similarity=0.549 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 039715 576 GIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP 608 (805)
Q Consensus 576 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~ 608 (805)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=1.8e-05 Score=85.16 Aligned_cols=216 Identities=13% Similarity=0.134 Sum_probs=141.7
Q ss_pred CCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 039715 374 LLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRA 453 (805)
Q Consensus 374 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 453 (805)
++|--.....+...+.+.|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+..+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455556677888899999999999999875 3577888899999998889888888776 36777777777777
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 530 (805)
..+..-+++|.++.+..... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 66666666666666544322 1111222223356677777777654432 3456666666666777777777
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 531 KVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
+.|..-.. ..||.. .|+.+-.++.+.|.-.+|...+++..+- + .-+...|...+-...+.|.+++|.+.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 77776666 566544 5677766777777777777766666632 3 333444555555566666666666666554
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.32 E-value=5.1e-05 Score=85.95 Aligned_cols=138 Identities=14% Similarity=0.058 Sum_probs=106.2
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTS 586 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 586 (805)
++..+-.|.....+.|++++|..+++...+ +.||.. ....+..++.+.+++++|+...++.. ...| +..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 566777778888888888888888888888 678765 56667777888888888888888877 3456 4567777
Q ss_pred HHHHHHhcCCHHHHHHHHHcCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 587 MVSLLGRAGHLDKAAKLIEGIP-FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
+...+.+.|++++|.++|+++- ..|+ ...|.++..++...|+.++|..+|+++++...+....|.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 7888888888888888888762 2444 567888888888888888888888888887665555543
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.32 E-value=4.8e-06 Score=73.66 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
+.+..-.+...+...|++++|..+|+-+ ...| +..-|-.|+..|...|++++|+.+|.++..++|+++.++.++|.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455666777888999999999999966 2345 5678999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHhh-cCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHHHHHHH
Q 039715 658 AMARSWEKAAS-KEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKS 709 (805)
Q Consensus 658 ~~~g~~~~a~~-~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~ 709 (805)
...|+.+.|.+ -...+.|. ..+|+..++..+.+.....+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-------------~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-------------GEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-------------ccChhHHHHHHHHHHHHHHh
Confidence 99999999988 11112221 24577777766655554444
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=4e-05 Score=86.80 Aligned_cols=125 Identities=15% Similarity=0.006 Sum_probs=110.4
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHH
Q 039715 541 WRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWR 617 (805)
Q Consensus 541 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~ 617 (805)
...+...+..|..+..+.|.+++|..+++... .+.|+ ......++..+.+.++++||+..+++. +..|+ .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 44457788889999999999999999999988 56786 467778899999999999999999976 55675 45677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 618 ALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 618 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+..++...|++++|+.+|+++++..|+++.+++.++.++...|+.++|..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 777888999999999999999999999999999999999999999999987
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.28 E-value=3.5e-05 Score=73.64 Aligned_cols=137 Identities=12% Similarity=0.123 Sum_probs=108.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG 595 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 595 (805)
+..|...|+++....-.+.+.. |. ..+...+..+++...++...+ ..| +...|..|+..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 4568899998886544433221 21 012235677888877777764 345 6789999999999999
Q ss_pred CHHHHHHHHHcC-CCCC-CHHHHHHHHHH-HHHcCC--HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 596 HLDKAAKLIEGI-PFQP-SVMIWRALLGA-CIIHNN--VEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 596 ~~~eA~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++++|...+++. ...| +...|..+..+ +...|+ .++|..+++++++.+|+++.++..|+..+...|++++|..
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999976 3455 56788888887 467777 5999999999999999999999999999999999999988
No 123
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.27 E-value=0.0068 Score=63.62 Aligned_cols=77 Identities=9% Similarity=0.022 Sum_probs=45.0
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC--CCcchHHHHHH
Q 039715 53 EFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE--RNTISFVTTIQ 130 (805)
Q Consensus 53 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~ 130 (805)
+-|..+|+.+++-+..+ ..++++..++++...- ..+...|..-|..-.+..+++...++|.+-.. -|+..|..-|.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34556666666665544 6666666666665432 23445566666666666666666666665432 35555655554
Q ss_pred H
Q 039715 131 G 131 (805)
Q Consensus 131 ~ 131 (805)
-
T Consensus 95 Y 95 (656)
T KOG1914|consen 95 Y 95 (656)
T ss_pred H
Confidence 3
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.26 E-value=0.015 Score=64.82 Aligned_cols=513 Identities=12% Similarity=0.052 Sum_probs=254.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH--HhCCCchHHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHH
Q 039715 68 QNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVY--VKLNRLPDATKLFDEMPE---RNTISFVTTIQGYTVSSQFVEAV 142 (805)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 142 (805)
..+++..|.+-...+.+..+. ..|...+.++ .+.|+.++|..+++.... .|..+...+-..|...|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 456788888888888777542 2344444444 578999999988887643 36668888889999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCC-HHHHHHHHhhhccc
Q 039715 143 GLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGC-VEFARKVFDGLFND 221 (805)
Q Consensus 143 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~g 221 (805)
.+|++... .-|+..-...+..++.+.+++..-.++--++.+ .++...+.+=++++.+...-. .+.+.. .|
T Consensus 98 ~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~---~i--- 168 (932)
T KOG2053|consen 98 HLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLD---PI--- 168 (932)
T ss_pred HHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCccccc---ch---
Confidence 99999877 557777777888888888776655444444444 234455555555555554321 111111 00
Q ss_pred cHHHHHHHHHHHHHCC-CCCChhhHHHHHHHhhCCCCHHHHHHHHHHH-HHhCCCCcHhHHHHHHHHHHcCCChHHHHHH
Q 039715 222 CFEEALNFFSQMRAVG-FKPNNFTFAFVLKACLGLDTIRVAKSAHGCA-LKTCYEMDLYVAVALLDLYTKSGEISNARRI 299 (805)
Q Consensus 222 ~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 299 (805)
...-|.+.++.+.+.+ ---+..-...-+..+...|+.++|..++..- .+.-...+...-+.-++++...+++.+-.++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 0112333444444332 1111111222223334456666666666332 2222333444445556666666666665555
Q ss_pred HhhCCCCCcccHHHHHHHHHh----------------CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc---cCCch
Q 039715 300 FEEMPKKDVIPWSFMIARYAQ----------------TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACAT---MEGLD 360 (805)
Q Consensus 300 f~~~~~~~~~~~~~li~~~~~----------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~ 360 (805)
-.++..++..-|...++.+.+ .+..+...+..++..... ..-+|..-+.+..+ .|+.+
T Consensus 249 ~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~e 325 (932)
T KOG2053|consen 249 SSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSE 325 (932)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChH
Confidence 444433322223333222111 111222222222222110 12233333343333 35555
Q ss_pred HHHHHHHHHHHhCCCc----c---------HHHHHHHHHHHHhcCChH-HHHHHHhcCCCCChhhHHHHHHHHHHcC---
Q 039715 361 LGNQIHSLVVRVGLLS----D---------VFVSNALMDVYAKCGRME-NSVELFAESPKRNHVTWNTMIVGYVQLG--- 423 (805)
Q Consensus 361 ~a~~~~~~~~~~g~~~----~---------~~~~~~Li~~y~~~g~~~-~A~~~f~~~~~~~~~~~~~li~~~~~~g--- 423 (805)
++...| ..+.|-.| | +.-...+++++....+.. .+.++... +...+..-.-.|
T Consensus 326 e~~~~y--~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~--------h~c~l~~~rl~G~~~ 395 (932)
T KOG2053|consen 326 EMLSYY--FKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ--------HLCVLLLLRLLGLYE 395 (932)
T ss_pred HHHHHH--HHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH--------HHHHHHHHHHhhccc
Confidence 443332 22223222 1 111222333332221111 11111100 001111111111
Q ss_pred --ChHHHHHHHHHHh---------hcCCCCChhh---------HHHHHHHHhccCCchhHH---HHHHHHHHcCCCCcHh
Q 039715 424 --EVGKAMIMFSKML---------EEQVPATEVT---------YSSVLRACASLAALEPGM---QVHCLTVKANYDMDVV 480 (805)
Q Consensus 424 --~~~~A~~~~~~m~---------~~g~~p~~~t---------~~~ll~a~~~~~~~~~a~---~~~~~~~~~~~~~~~~ 480 (805)
..+.-..++++.. ..+.-|+..+ .+.++..|.+.++..... -+++...... +.|..
T Consensus 396 ~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~ 474 (932)
T KOG2053|consen 396 KLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQ 474 (932)
T ss_pred cCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHH
Confidence 1122222222221 1223444433 345667777777766333 3333333332 44555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCCC----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMNDW----NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS 556 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 556 (805)
+--.||..|+--|-+..|.++|..+.-+ |...|- +..-+...|++..+...++....---..-..+--.+..||.
T Consensus 475 ~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr 553 (932)
T KOG2053|consen 475 TKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYR 553 (932)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 6667889999999999999999988744 333332 23445567788877777776554210001112223334443
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC
Q 039715 557 NGGLLEQGEAYFKSMVANYGIEPC-----IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQP 611 (805)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 611 (805)
.|.+.+..++. .+.++ +.-+ ..+-+..++.+...++.++-...++.|...|
T Consensus 554 -~g~ySkI~em~-~fr~r--L~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 554 -RGAYSKIPEML-AFRDR--LMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMKLPP 609 (932)
T ss_pred -cCchhhhHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccccCc
Confidence 36665554432 22221 1111 2344556778888999999988888875333
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.00012 Score=69.59 Aligned_cols=151 Identities=11% Similarity=0.095 Sum_probs=95.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 039715 514 NAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLG 592 (805)
Q Consensus 514 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 592 (805)
..+-..+...|+.+.+..+..+... ..| |.......+......|++.+|...|++... .-.+|.+.|+.+.-.|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 4444555566666666666555443 122 223333455566666777777777666652 22335667777777777
Q ss_pred hcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 593 RAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 593 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.|++++|..-|.+. .+.| ++.+.++|+..+...||.+.|+..+..+....|.++..-..|+-+....|++++|.+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 777777776666544 3333 355677777777777777777777777777777777777777777777777777766
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=2.5e-05 Score=84.03 Aligned_cols=180 Identities=15% Similarity=0.198 Sum_probs=145.2
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 474 NYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 474 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
+++|--..-..+.+.+.++|-...|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||..-|..+++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666667778889999999999999999875 4688888999999999999998888877 4788889999988
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH-cCCCCC-CHHHHHHHHHHHHHcCCHHH
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIE-GIPFQP-SVMIWRALLGACIIHNNVEI 631 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~-~~~~~p-~~~~~~~l~~~~~~~g~~~~ 631 (805)
.....--+++|.++++....+ .-..+.....+.++++++.+-++ ++.++| -..+|-.++.+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888878888888887765432 22223333445788999988887 345555 35689888888889999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 632 GRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 632 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|.++|.....++|++...+.+++-+|.+.|+..+|.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999888887
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.13 E-value=0.00037 Score=80.31 Aligned_cols=226 Identities=13% Similarity=0.168 Sum_probs=155.0
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCh-----hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHH
Q 039715 409 HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE-----VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVAN 483 (805)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 483 (805)
...|-..|.-..+.++.++|.+++++.+.. +.+.. -.|.++++.-..-|.-+...++|+++.+.. ....+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 345666666666666677777666666542 21111 134444444444445555566666666543 2345788
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHH-HHHHHHc
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN--NLTFVG-VLSACSN 557 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~-ll~a~~~ 557 (805)
.|...|.+.++.++|.++|+.|.++ ....|...+..+.++.+.+.|..++.+.++. -|. .+-+.+ .+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 8899999999999999999999854 5678999999999999999999999998884 454 333322 2333457
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHHcCCHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI---PFQPS--VMIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a 632 (805)
.|+.+.|+.+|+.....| +.....|+.++++=.+.|..+.++.+|+++ .+.|- -..|.-.+..=..||+-+..
T Consensus 1613 ~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 799999999999988653 235678999999999999999999999976 22232 23566666666677877666
Q ss_pred HHHHHHHhc
Q 039715 633 RLSAQHILD 641 (805)
Q Consensus 633 ~~~~~~~~~ 641 (805)
+.+=.++.|
T Consensus 1691 E~VKarA~E 1699 (1710)
T KOG1070|consen 1691 EYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHH
Confidence 665555554
No 128
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.13 E-value=0.00018 Score=82.82 Aligned_cols=192 Identities=14% Similarity=0.229 Sum_probs=86.3
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHHHc-CCC---CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-C-HhHHHHHHHH
Q 039715 446 TYSSVLRACASLAALEPGMQVHCLTVKA-NYD---MDVVVANALIDMYAKCGSITDARLVFDMMNDW-N-EVSWNAMISG 519 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~~ 519 (805)
.|...+.-..+.+++++|+++.+++++. ++. --..+|.+++++-..-|.-+...++|+++.+- | ...|..|...
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3444444444555555555555544432 111 11234444444444444444455555554422 1 2344445555
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCC
Q 039715 520 YSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC---IEHYTSMVSLLGRAGH 596 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~ 596 (805)
|.+.+++++|.++|+.|.+. +.-....|...+..+.+...-+.|..++.++++. -|. .....-.+++-.+.|+
T Consensus 1540 y~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhcCC
Confidence 55555555555555555543 2223334444555555554445555555554422 222 2222233344445555
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 597 LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 597 ~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
.+.+..+|+.. .-.| -...|+.++..-.+||+.+.+..+|+++++
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 55555555533 1111 233455555555555555555555555544
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=0.00027 Score=80.86 Aligned_cols=232 Identities=9% Similarity=0.067 Sum_probs=129.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 039715 377 DVFVSNALMDVYAKCGRMENSVELFAESPK--R-NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRA 453 (805)
Q Consensus 377 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 453 (805)
+...+..|+..|...+++++|.++.+...+ | ....|..+...+.+.++..++..+ .+ +..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhh
Confidence 445566666666666666666666654332 2 222333333355555554444333 22 122
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 530 (805)
.....++.....++..+.+. ..+...+..|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 22222232223333333332 22334566666667677777777777666653 2556666666666666 666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 039715 531 KVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGIPF 609 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~ 609 (805)
+++.+.... +.....+.++.+++..+.. ..|+ ...+--+..... ..+.+
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~------------~~~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVL------------GHREF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHH------------hhhcc
Confidence 666666552 3344456666666666652 2332 222111111111 11112
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 039715 610 QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYA 658 (805)
Q Consensus 610 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 658 (805)
..-+.+|--+-.-|...+++++++.+++.+++.+|.|..+..-|+..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3334556666677888899999999999999999999888888888766
No 130
>PLN02789 farnesyltranstransferase
Probab=98.12 E-value=0.0011 Score=68.35 Aligned_cols=220 Identities=10% Similarity=0.026 Sum_probs=120.0
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccC-CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 039715 418 GYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLA-ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSI 495 (805)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 495 (805)
.+...++.++|+.+..++++. .|+.. .+..--..+...+ .++++...+..+++.+ +.+..+|+...-++.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 334445555566665555542 33333 2222222333334 3455555555555544 22334455444444444542
Q ss_pred --HHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CC----HHH
Q 039715 496 --TDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNG---GL----LEQ 563 (805)
Q Consensus 496 --~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~~~ 563 (805)
+++..+++++. .+|..+|+-...++...|+++++++.++++++.+.. |...|+....++.+. |. .++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 45666666655 346677777777777778888888888888775422 333444444444333 22 245
Q ss_pred HHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhc----CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcC---------
Q 039715 564 GEAYFKSMVANYGIEP-CIEHYTSMVSLLGRA----GHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHN--------- 627 (805)
Q Consensus 564 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~----g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--------- 627 (805)
...+...++ .+.| +...|+.+..+|... ++..+|.+++.+. ...| ++.....|+..|....
T Consensus 202 el~y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 202 ELKYTIDAI---LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHHHH---HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 566665555 2345 456677676666662 3456677776654 2234 3455666666665421
Q ss_pred ---------CHHHHHHHHHHHhccCC
Q 039715 628 ---------NVEIGRLSAQHILDFEP 644 (805)
Q Consensus 628 ---------~~~~a~~~~~~~~~~~p 644 (805)
..++|..+++.+-+.+|
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhccccccccHHHHHHHHHHHHhhCc
Confidence 33667777777766666
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00093 Score=63.66 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 594 AGHLDKAAKLIEGIP--FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 594 ~g~~~eA~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+.+.+|.-+|++|. ..|+..+.+.+..++...|++++|+..++.++.-+|+++.++.++.-.--..|+-.++..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 345566666666662 457777778888888888888888888888888888888888888888888888877766
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=0.00082 Score=69.72 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=77.0
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEI 631 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 631 (805)
....|..++|+..++.+... .| |+......++.+.+.++.++|.+.++++ ...|+ ...|-++..++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34557777777777776633 34 4455555667777777777777777765 34555 5567777777777777777
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 632 GRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 632 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|+..++..+.-+|+++..|..|+..|..+|+-.+|..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 7777777777777777777777777777777766655
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=5.7e-06 Score=53.97 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=32.8
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCc
Q 039715 123 ISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNP 157 (805)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 157 (805)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.07 E-value=3.7e-05 Score=69.01 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
....++..+...|++++|.+.++.+ ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|...
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3444444455555555555555443 1222 3345555555555555555555555555555555555555555555555
Q ss_pred CChHHHhh
Q 039715 661 RSWEKAAS 668 (805)
Q Consensus 661 g~~~~a~~ 668 (805)
|++++|.+
T Consensus 99 g~~~~A~~ 106 (135)
T TIGR02552 99 GEPESALK 106 (135)
T ss_pred CCHHHHHH
Confidence 55555544
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=0.00039 Score=72.03 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVL-SACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVS 589 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 589 (805)
.+-.....+...|++++|+..++.++. -.||...|..+. ..+...++.++|.+.++++. ...|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHH
Confidence 333444455667889999999999888 467776665544 45788999999999999988 45676 556677889
Q ss_pred HHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 590 LLGRAGHLDKAAKLIEGI--PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 590 ~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
+|.+.|+++||+..++.. ..+.|+..|..|..+|...|+..++..+ .+..|+-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 999999999999998865 2234678899999999999998888754 456778889999987
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
.
T Consensus 446 ~ 446 (484)
T COG4783 446 I 446 (484)
T ss_pred H
Confidence 7
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.04 E-value=0.00011 Score=66.02 Aligned_cols=114 Identities=7% Similarity=0.042 Sum_probs=90.1
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-C
Q 039715 532 VFDLMQQRGWRPNN-LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-P 608 (805)
Q Consensus 532 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 608 (805)
.|++.++ ..|+. .....+...+...|++++|.+.|+.+... .| +...+..+...|.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666 45654 34556667788889999999999888743 34 6678888999999999999999988866 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 039715 609 FQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 609 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
..| +...|..+...+...|+.++|...+++++++.|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 344 567888888999999999999999999999999887643
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00018 Score=75.40 Aligned_cols=116 Identities=12% Similarity=0.101 Sum_probs=96.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACII 625 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~ 625 (805)
..+++..+...+++++|..+|+++.+. .|+ ....|+..+...++-.+|.+++.+. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666777888999999999998854 355 4445778888888889999988765 2233 56677777777999
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 626 HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 626 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.++++.|+.+++++.++.|++-.+|..|+.+|...|+|++|..
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999999999999999999999999999999988
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=9.8e-06 Score=52.81 Aligned_cols=35 Identities=34% Similarity=0.628 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN 545 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 545 (805)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00022 Score=74.80 Aligned_cols=126 Identities=10% Similarity=0.143 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCC
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGG 559 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g 559 (805)
...+|+..+...++++.|.++|+++.+.++..+..|+..+...++-.+|++++++.++. .| +...+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 44456677778899999999999999887777777888898899999999999999874 45 4444444555588899
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC
Q 039715 560 LLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQP 611 (805)
Q Consensus 560 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p 611 (805)
+.+.|+.+.+++. ...|+ ..+|..|+..|.+.|++++|+-.++.+|+.+
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999988 45675 5699999999999999999999999998544
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.00012 Score=71.19 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=78.1
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEI 631 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 631 (805)
..+.+++.+|+..|...+ .+.| |+..|..-..+|.+.|.++.|++=.+.. .+.|. ...|..|+.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345667777777777766 4566 3444555567777777777777666544 45565 4589999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 039715 632 GRLSAQHILDFEPEDEATHVLLSNIYAMARSWE 664 (805)
Q Consensus 632 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 664 (805)
|++.|+++++++|++......|..+--+.+.-.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999977777776655555444
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.0021 Score=60.85 Aligned_cols=167 Identities=13% Similarity=0.128 Sum_probs=118.3
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHH---HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDWNEVSWNAM---ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGL 560 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 560 (805)
.++-+...+|+.+.|...++.+..+-+-++... ..-+-..|++++|+++++..++.. +.|.+++---+...-..|+
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 333344456777777777766543211111111 112455788999999999998865 3466677776667777788
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcC---CHHHHHHH
Q 039715 561 LEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHN---NVEIGRLS 635 (805)
Q Consensus 561 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~a~~~ 635 (805)
--+|++-+....+. +.-|.+.|.-+.++|...|.++.|.-.++++ -..| ++..+..+...+.-.| +.+.|.+.
T Consensus 136 ~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888888765 4668899999999999999999999999887 2345 5566777777755554 77889999
Q ss_pred HHHHhccCCCCcchHHHH
Q 039715 636 AQHILDFEPEDEATHVLL 653 (805)
Q Consensus 636 ~~~~~~~~p~~~~~~~~l 653 (805)
|.+++++.|.+...+..+
T Consensus 214 y~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 214 YERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHhChHhHHHHHHH
Confidence 999999999776555444
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.003 Score=72.61 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCC
Q 039715 445 VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHG 524 (805)
Q Consensus 445 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 524 (805)
..+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|++++.+... .|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~-----------~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY-----------RFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-----------HHHhhh
Confidence 355666667777777777777777777766 56777888888888888 88888888766432 366667
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH
Q 039715 525 LSAEVLKVFDLMQQRGWRPNNL 546 (805)
Q Consensus 525 ~~~~A~~l~~~m~~~g~~p~~~ 546 (805)
++.++.++|.++.+ ..|+.+
T Consensus 184 q~~~~~e~W~k~~~--~~~~d~ 203 (906)
T PRK14720 184 QYVGIEEIWSKLVH--YNSDDF 203 (906)
T ss_pred cchHHHHHHHHHHh--cCcccc
Confidence 78888888888877 345543
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.92 E-value=1.6e-05 Score=51.36 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 039715 122 TISFVTTIQGYTVSSQFVEAVGLFSTLHREGHEL 155 (805)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 155 (805)
+.+||++|.+|++.|+++.|+++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999987
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.88 E-value=0.00078 Score=61.07 Aligned_cols=124 Identities=16% Similarity=0.237 Sum_probs=84.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh--HHHHH
Q 039715 513 WNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN----LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI--EHYTS 586 (805)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ 586 (805)
|..++..+ ..++...+...++++.+. .|+. .....+...+...|++++|...|+.+... ...|.. ...-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 34444444 477888888888888875 3433 23344556677888899999888888865 322322 23445
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039715 587 MVSLLGRAGHLDKAAKLIEGIPFQP-SVMIWRALLGACIIHNNVEIGRLSAQHIL 640 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 640 (805)
|..++...|++++|+..++..+..+ ....+..++..+...|+.++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 6777888888888888888764222 34567777778888888888888888764
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.87 E-value=0.0023 Score=67.98 Aligned_cols=271 Identities=11% Similarity=0.065 Sum_probs=134.9
Q ss_pred CCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHH
Q 039715 154 ELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQM 233 (805)
Q Consensus 154 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m 233 (805)
.|.+..+.+-+-.+...|.+++|.++- ++.....-|..|..--...=+++-|++.+.++++-.+-+-+.-+++|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~ 626 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEER 626 (1081)
T ss_pred ecccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555566666777776665442 11222334445554444555777777777777666676777777777
Q ss_pred HHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHH
Q 039715 234 RAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSF 313 (805)
Q Consensus 234 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 313 (805)
++.|-.|+.... ...++-.|++.+|.++|.+
T Consensus 627 k~rge~P~~iLl--------------------------------------A~~~Ay~gKF~EAAklFk~----------- 657 (1081)
T KOG1538|consen 627 KKRGETPNDLLL--------------------------------------ADVFAYQGKFHEAAKLFKR----------- 657 (1081)
T ss_pred HhcCCCchHHHH--------------------------------------HHHHHhhhhHHHHHHHHHH-----------
Confidence 777766664422 2233445666666666654
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 039715 314 MIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGR 393 (805)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 393 (805)
+|....|+++|..|+-- -...-+...|+.++-+.+.+.-.+.. .++.--.+...++...|+
T Consensus 658 -------~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe 718 (1081)
T KOG1538|consen 658 -------SGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGE 718 (1081)
T ss_pred -------cCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccc
Confidence 34445555555554321 11122333344333333332221110 011111233455556666
Q ss_pred hHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHc
Q 039715 394 MENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKA 473 (805)
Q Consensus 394 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 473 (805)
.++|..+. ..+|-.+-++++-+++-. .+..+...+..-+.+...+..|-++|..+-..
T Consensus 719 ~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 719 HVKAIEIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred hhhhhhhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 66665543 223333444444333321 12233333444444555566666666555322
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHH
Q 039715 474 NYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEV 529 (805)
Q Consensus 474 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 529 (805)
.+++++....+++++|..+-++.++--...|-.-..-++...+++||
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHH
Confidence 35667777777888887777777653222233333333344444443
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.80 E-value=3.6e-05 Score=49.72 Aligned_cols=33 Identities=27% Similarity=0.570 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP 543 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 543 (805)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00049 Score=69.42 Aligned_cols=152 Identities=9% Similarity=-0.006 Sum_probs=112.6
Q ss_pred hHHHHHH-HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHcCCCHHHHHHHHHHHHHhcCCCCChHH----
Q 039715 511 VSWNAMI-SGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVL--SACSNGGLLEQGEAYFKSMVANYGIEPCIEH---- 583 (805)
Q Consensus 511 ~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---- 583 (805)
.+|-.+- .++...|++++|.+.--..++ +.++.. +..++ .++...++.+.|...|++.+ .+.|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATNA-EALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSA 242 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccchh-HHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhH
Confidence 4444442 456778999999888777766 333222 22222 23456778899999988876 45665322
Q ss_pred ---------HHHHHHHHHhcCCHHHHHHHHHcC-C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 584 ---------YTSMVSLLGRAGHLDKAAKLIEGI-P-----FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 584 ---------~~~li~~~~~~g~~~eA~~~~~~~-~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
+..=.....+.|++.+|.+.+.+. . .+|++..|.....+..+.|+.++|+.-.+.+++++|....
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 222234567899999999999865 3 3455666777777888999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHhh
Q 039715 649 THVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 649 ~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|..-++.+...++|++|++
T Consensus 323 all~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=7.6e-05 Score=72.41 Aligned_cols=111 Identities=13% Similarity=0.093 Sum_probs=92.6
Q ss_pred HHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 588 VSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
+.-+.+.+++++|+..+.+. .+.| |++.|..=..+|.+.|.++.|++..+.++.++|....+|..||-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45577889999999999865 5566 677788888999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHHHHHHHHHcC
Q 039715 666 AASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKAG 713 (805)
Q Consensus 666 a~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g 713 (805)
|.+ .|..+-...|..+.....|+.+..++++..
T Consensus 168 A~~---------------aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIE---------------AYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHH---------------HHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 988 233344567888877777877777766543
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.70 E-value=0.00058 Score=59.46 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=64.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLG 621 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~ 621 (805)
+..+...+...|++++|...|+.+...+.-.| ....+..++.++.+.|++++|.+.++++ ...|+ ..+|..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444455556666666666666654321111 1234455666666667777776666654 11222 456777778
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 622 ACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 622 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
++...|+.++|...++++++..|+++....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 888888888899888888888887765443
No 150
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.0013 Score=72.36 Aligned_cols=141 Identities=9% Similarity=0.020 Sum_probs=92.5
Q ss_pred CCCHhHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHc----C----CCHHHHHHHHHHHH
Q 039715 507 DWNEVSWNAMISGYSMH-----GLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSN----G----GLLEQGEAYFKSMV 572 (805)
Q Consensus 507 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~----~----g~~~~a~~~~~~m~ 572 (805)
..|...|...+.+.... +...+|+.+|++..+ ..|+.. .+..+..++.. . +.+..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34677777777664432 236689999999998 678754 34433332211 1 12233333333332
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 573 ANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 573 ~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
.......+...|..+.-.....|++++|...++++ ...|+...|..++..|...|+.++|...+++++.++|.++..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 21112234567777777777788999999888876 466787788888888888999999999999999999977753
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.68 E-value=0.0012 Score=59.94 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCCCH----HHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP-FQPSV----MIWRALL 620 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~----~~~~~l~ 620 (805)
.|..++.+. ..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.+. ..||. ..+-.|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444454 47889999999999987643332 12344456688899999999999999773 22443 3566677
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..+...|++++|+..++.. .-.|-.+..+..+|++|...|++++|..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 8889999999999999763 3344456778899999999999999975
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.014 Score=55.56 Aligned_cols=185 Identities=12% Similarity=0.125 Sum_probs=135.6
Q ss_pred cCChHHHHHHHHHHhh---cC-CCCChh-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 039715 422 LGEVGKAMIMFSKMLE---EQ-VPATEV-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSIT 496 (805)
Q Consensus 422 ~g~~~~A~~~~~~m~~---~g-~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 496 (805)
..+.++.++++.++.. .| ..|+.. .|-.+.-+....|..+.|...++.+...- +.+..+...-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3457777777777754 33 455555 35556667777888888888888877664 434444433334466679999
Q ss_pred HHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 497 DARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 497 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
+|.++++.+.+. |.+++-.-+......|+..+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 999999998854 6667777777888889989999998888885 56688899999999999999999999999988
Q ss_pred hcCCCC-ChHHHHHHHHHHHhcC---CHHHHHHHHHcC-CCCC
Q 039715 574 NYGIEP-CIEHYTSMVSLLGRAG---HLDKAAKLIEGI-PFQP 611 (805)
Q Consensus 574 ~~~~~p-~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~p 611 (805)
-+.| ++..+..+.+.+.-.| +++-|.+.+.+. .+.|
T Consensus 182 --l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 --LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred --HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 4667 4555667777665544 666788888765 3444
No 153
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.012 Score=56.35 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=86.3
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----cCCCH
Q 039715 486 IDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS----NGGLL 561 (805)
Q Consensus 486 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~ 561 (805)
...|.+.|++++|++.......-+....+ ...+.+..+.+-|.+.+++|++- -+..|.+-|..++. ..+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 34566667777777666663322333222 23344556667777777777662 24455555555543 23456
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 039715 562 EQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI--PFQPSVMIWRALLGACIIHNNV-EIGRLSAQH 638 (805)
Q Consensus 562 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 638 (805)
.+|.-+|++|.++ ..|+..+.+-+.-+....|+++||..++++. ....++.+...++..-...|.- +--.+...+
T Consensus 190 qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 6777777777643 4566666666666666677777777777655 1123444555555554455543 333455566
Q ss_pred HhccCCCC
Q 039715 639 ILDFEPED 646 (805)
Q Consensus 639 ~~~~~p~~ 646 (805)
+....|+.
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 66556643
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=5.8e-05 Score=47.47 Aligned_cols=31 Identities=29% Similarity=0.599 Sum_probs=26.8
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 039715 123 ISFVTTIQGYTVSSQFVEAVGLFSTLHREGH 153 (805)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 153 (805)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.64 E-value=8.1e-05 Score=57.54 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-ChHHHhh
Q 039715 612 SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR-SWEKAAS 668 (805)
Q Consensus 612 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~ 668 (805)
++.+|..++..+...|++++|+..++++++++|+++..+..+|.+|...| ++++|.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHH
Confidence 45678888888888888888888888888888888888888888888888 6888765
No 156
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.61 E-value=4.7e-05 Score=48.73 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=31.5
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 635 SAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 635 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+++++++++|+++.+|..||.+|...|++++|.+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999964
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.61 E-value=0.00022 Score=75.27 Aligned_cols=106 Identities=10% Similarity=0.128 Sum_probs=74.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 628 (805)
...+...|++++|+..|+++++ +.| +...|..+..+|.+.|++++|+..++++ .+.| +...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3445667888888888888773 345 4566777777788888888888777765 3344 45567777777778888
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 629 VEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
+++|+..++++++++|+++.....+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888888888888887777766665554433
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.59 E-value=0.00092 Score=70.54 Aligned_cols=101 Identities=12% Similarity=0.092 Sum_probs=80.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHH
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLG 592 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 592 (805)
.....+...|++++|+++|+++++ ..|+ ...|..+..++...|++++|+..++.++. +.| +...|..++.+|.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHH
Confidence 345567788999999999999999 4564 55777888889999999999999999984 556 5678889999999
Q ss_pred hcCCHHHHHHHHHcC-CCCCCHHHHHHHH
Q 039715 593 RAGHLDKAAKLIEGI-PFQPSVMIWRALL 620 (805)
Q Consensus 593 ~~g~~~eA~~~~~~~-~~~p~~~~~~~l~ 620 (805)
..|++++|+..|++. .+.|+......++
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999876 3455544333333
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.0022 Score=60.15 Aligned_cols=130 Identities=10% Similarity=0.119 Sum_probs=89.5
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN--NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYT 585 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 585 (805)
....+..+...+...|++++|+..|++..+....+. ...+..+...+.+.|++++|...+++... +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 455677777788888888888888888877433332 24666777778888888888888887774 344 345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
.++.+|...|+...+..-++.. ...+++|.+.++++++++|++ |..+...+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6677777777666554333221 123678899999999999977 6666666666665
No 160
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.57 E-value=9e-05 Score=46.59 Aligned_cols=31 Identities=48% Similarity=0.807 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGW 541 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 541 (805)
++||+|+.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=6e-05 Score=60.95 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSV-MIWRALLGACIIHNNVEIGRLSA 636 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 636 (805)
.|+++.|+.+++++.+.....|+...+-.+..+|.+.|++++|.+++++.+..|+. ...-.++.+|...|++++|+.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45666666666666644211112333444555566666666666666553322322 22333344455555555555555
Q ss_pred HH
Q 039715 637 QH 638 (805)
Q Consensus 637 ~~ 638 (805)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.00041 Score=57.19 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSW 663 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 663 (805)
.++..+.+.|++++|...++++ ...| +...|..+...+...|++++|...++++++..|.+...+..++.++...|++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3444555555555555555543 1122 2244555555555556666666666666666665555555666666666665
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
++|.+
T Consensus 85 ~~a~~ 89 (100)
T cd00189 85 EEALE 89 (100)
T ss_pred HHHHH
Confidence 55543
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.52 E-value=0.0044 Score=57.82 Aligned_cols=123 Identities=11% Similarity=0.100 Sum_probs=76.5
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN--NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTS 586 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 586 (805)
...|..++..+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+..++.... +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 45667777777888888888888888876432221 23677777778888888888888877763 3342 344555
Q ss_pred HHHHHHhcC-------CHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 039715 587 MVSLLGRAG-------HLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM 659 (805)
Q Consensus 587 li~~~~~~g-------~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 659 (805)
+..+|...| ++++|.. .+++|...++++++.+|++. ......+..
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~ 163 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGNY---IEAQNWLKI 163 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCcccH---HHHHHHHHH
Confidence 555555333 2222221 23466777788888888553 344444555
Q ss_pred cCCh
Q 039715 660 ARSW 663 (805)
Q Consensus 660 ~g~~ 663 (805)
.|++
T Consensus 164 ~~~~ 167 (168)
T CHL00033 164 TGRF 167 (168)
T ss_pred hcCC
Confidence 5554
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.49 E-value=0.00034 Score=53.22 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=43.7
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
+...+.+.|++++|.+.|+++ ...| +...|..++.++...|++++|+..++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677778888888877765 3345 355788888888888888888888888888888764
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.49 E-value=0.00061 Score=63.66 Aligned_cols=88 Identities=10% Similarity=-0.114 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
...|..++..+...|++++|...+++. ...|+ ..+|..+...+...|+.++|+..+++++++.|+....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455667777788888888888888765 22222 3579999999999999999999999999999999999999999
Q ss_pred HHH-------hcCChHHHhh
Q 039715 656 IYA-------MARSWEKAAS 668 (805)
Q Consensus 656 ~~~-------~~g~~~~a~~ 668 (805)
+|. ..|++++|..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~ 134 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEA 134 (168)
T ss_pred HHHHhhHHHHHcccHHHHHH
Confidence 999 6667766544
No 166
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.46 E-value=0.15 Score=52.59 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCch
Q 039715 382 NALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALE 461 (805)
Q Consensus 382 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 461 (805)
+..+.-+...|+...|.++-.+..-+|..-|-..+.+|+..+++++-..+-.. +-.++-|-.++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566778888888888888778888888889999999998877665332 223477888888888888888
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhh
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
+|..+...+ .+..-+.+|.++|++.+|.+.--
T Consensus 255 eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 255 EASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 877766551 12566788888888888876643
No 167
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.40 E-value=0.19 Score=50.94 Aligned_cols=233 Identities=16% Similarity=0.139 Sum_probs=147.9
Q ss_pred cCChHHHHHHHHHHhhcCCCCCh--hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 039715 422 LGEVGKAMIMFSKMLEEQVPATE--VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDAR 499 (805)
Q Consensus 422 ~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 499 (805)
.|+++.|.+-|+.|... |.. .-+..|.-...+.|..+.+.++-+..-..- +.-.-.+.+.++..+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 56667777777766541 111 112233333445666666666665554433 223456677788888888888888
Q ss_pred HHhhhcC-----CCCHh--HHHHHHHHHH---hCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHH
Q 039715 500 LVFDMMN-----DWNEV--SWNAMISGYS---MHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYF 568 (805)
Q Consensus 500 ~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 568 (805)
++.+.-. ++|+. .-..|+.+-+ -.-+...|...-.+..+ +.||-+ .-.....++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 8887654 33332 1222222211 12346666666666665 788866 3444556789999999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHhcCCHHHH--HH--HHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 569 KSMVANYGIEPCIEHYTSMVSLLGRAGHLDKA--AK--LIEGIPFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 569 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA--~~--~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
+.+-+ .+|.+..+.. ..+.|.|+.... .. -++.| +|| ..+--+...+-...|++..|....+.+....
T Consensus 287 E~aWK---~ePHP~ia~l--Y~~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWK---AEPHPDIALL--YVRARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHh---cCCChHHHHH--HHHhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 99874 4666655433 334566643222 11 12344 454 5566677777888999999999999999999
Q ss_pred CCCcchHHHHHHHHHhc-CChHHHhh
Q 039715 644 PEDEATHVLLSNIYAMA-RSWEKAAS 668 (805)
Q Consensus 644 p~~~~~~~~l~~~~~~~-g~~~~a~~ 668 (805)
| ..++|.+|+++-... |+-+++..
T Consensus 360 p-res~~lLlAdIeeAetGDqg~vR~ 384 (531)
T COG3898 360 P-RESAYLLLADIEEAETGDQGKVRQ 384 (531)
T ss_pred c-hhhHHHHHHHHHhhccCchHHHHH
Confidence 9 567899999987666 88888776
No 168
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.39 E-value=0.0012 Score=57.37 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---cchHHHH
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED---EATHVLL 653 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 653 (805)
..+..++..+.+.|++++|.+.++++ ...|+ ...+..++.++...|++++|...+++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788899999999999999877 22333 3467778889999999999999999999999875 5678899
Q ss_pred HHHHHhcCChHHHhh
Q 039715 654 SNIYAMARSWEKAAS 668 (805)
Q Consensus 654 ~~~~~~~g~~~~a~~ 668 (805)
+.+|.+.|++++|.+
T Consensus 83 ~~~~~~~~~~~~A~~ 97 (119)
T TIGR02795 83 GMSLQELGDKEKAKA 97 (119)
T ss_pred HHHHHHhCChHHHHH
Confidence 999999999999977
No 169
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.31 Score=53.11 Aligned_cols=344 Identities=13% Similarity=0.121 Sum_probs=152.6
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHH
Q 039715 189 DSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCA 268 (805)
Q Consensus 189 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 268 (805)
.|.+..|..|...-.+.-.++.|+..|-+. |+|.. +++..++...- +...-..=+. +--|.+++|.+++-.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc--~dY~G-ik~vkrl~~i~---s~~~q~aei~--~~~g~feeaek~yld~ 760 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC--GDYAG-IKLVKRLRTIH---SKEQQRAEIS--AFYGEFEEAEKLYLDA 760 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh--ccccc-hhHHHHhhhhh---hHHHHhHhHh--hhhcchhHhhhhhhcc
Confidence 467777877777666666777777776533 22211 11111111100 0000000001 1124555555555443
Q ss_pred HHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC-----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 039715 269 LKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK-----DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQ 343 (805)
Q Consensus 269 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 343 (805)
-+.. ..|.++.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-...
T Consensus 761 drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------ 825 (1189)
T KOG2041|consen 761 DRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------ 825 (1189)
T ss_pred chhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------
Confidence 3322 2344555555555555555432211 1123555555555555555555555443210
Q ss_pred hHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 039715 344 FTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLG 423 (805)
Q Consensus 344 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 423 (805)
...+.++.+..++++-+.+... ++.+....-.+.+++.+.|.-++|.+.|-+-..|. +-+..|...+
T Consensus 826 ---e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 826 ---ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELN 892 (1189)
T ss_pred ---HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHH
Confidence 1123333333333332222221 24444555556666666666666666654443332 2234455555
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhh
Q 039715 424 EVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 424 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
++.+|.++-+...- |...|+ +.-+ +-+++ .+.+ ..--|.++.+.|+.-+|.+++.
T Consensus 893 QW~~avelaq~~~l----~qv~tl---iak~--------aaqll---~~~~-------~~eaIe~~Rka~~~~daarll~ 947 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQL----PQVQTL---IAKQ--------AAQLL---ADAN-------HMEAIEKDRKAGRHLDAARLLS 947 (1189)
T ss_pred HHHHHHHHHHhccc----hhHHHH---HHHH--------HHHHH---hhcc-------hHHHHHHhhhcccchhHHHHHH
Confidence 66666665554421 222221 1100 11111 1100 0113566777888777777777
Q ss_pred hcCCCCH---hHHHHHHHHHH----hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Q 039715 504 MMNDWNE---VSWNAMISGYS----MHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYG 576 (805)
Q Consensus 504 ~~~~~~~---~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 576 (805)
+|.++.. +.|..+-..|. -..++.++++-.++....|...|... +...|...++-++.+..-. |
T Consensus 948 qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g 1018 (1189)
T KOG2041|consen 948 QMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G 1018 (1189)
T ss_pred HHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h
Confidence 7764311 11111111111 11233445555555555554333221 1233344444444332221 1
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039715 577 IEPCIEHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 577 ~~p~~~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
....|+-.|..--...|+.+.|+..-
T Consensus 1019 --AEAyHFmilAQrql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 1019 --AEAYHFMILAQRQLFEGRVKDALQTA 1044 (1189)
T ss_pred --HHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 23456666666677788888888753
No 170
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.36 E-value=0.42 Score=53.91 Aligned_cols=216 Identities=12% Similarity=0.059 Sum_probs=119.9
Q ss_pred hCCCchHHHHHhccCCC--CCcchHHHHHHHH--HcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhh
Q 039715 103 KLNRLPDATKLFDEMPE--RNTISFVTTIQGY--TVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPC 178 (805)
Q Consensus 103 ~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 178 (805)
..+++..|....+++.. ||. .|...+.++ .+.|+.++|..+++.....+.. |..|..++-..|.+.+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 45677777777777654 333 356666665 5678888888888777654433 66688888888888888888888
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCC-
Q 039715 179 VFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDT- 257 (805)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~- 257 (805)
++++..... |+......+-.+|.+.+++..-++ .|++++. ...-+.+.|.++++.......
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQk-----------aa~~LyK-----~~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQK-----------AALQLYK-----NFPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH-----hCCcccchHHHHHHHHHHhccC
Confidence 888877654 456666667777777666553222 2444443 233345667777666543221
Q ss_pred ---------HHHHHHHHHHHHHhC-CCCcHhHHHHHHHHHHcCCChHHHHHHHhh-C----CCCCcccHHHHHHHHHhCC
Q 039715 258 ---------IRVAKSAHGCALKTC-YEMDLYVAVALLDLYTKSGEISNARRIFEE-M----PKKDVIPWSFMIARYAQTD 322 (805)
Q Consensus 258 ---------~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-~----~~~~~~~~~~li~~~~~~g 322 (805)
+..|....+.+++.+ ......-.-.-.......|+.++|..++.. . ..-+...-|--+.-+...+
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~ 240 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN 240 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence 223444444444433 111111111111223345556666665521 1 1112222334445555556
Q ss_pred ChhHHHHHHHHHHHCC
Q 039715 323 LSIDAVELFCRMRQAF 338 (805)
Q Consensus 323 ~~~~A~~~~~~m~~~g 338 (805)
++.+..++-.++...|
T Consensus 241 ~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 241 RWQELFELSSRLLEKG 256 (932)
T ss_pred ChHHHHHHHHHHHHhC
Confidence 6666666555555543
No 171
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.35 E-value=0.26 Score=51.20 Aligned_cols=462 Identities=12% Similarity=0.142 Sum_probs=226.9
Q ss_pred hcCCChHHHHHHHHHHHHcCCCC-C----cchHHHHHHHHHhCCCchHHHHHhccCCCC-CcchHHHHHHHH--HcCCCh
Q 039715 67 IQNDDLQTAMTIHCQVLKKGNCL-D----LFATNVLLNVYVKLNRLPDATKLFDEMPER-NTISFVTTIQGY--TVSSQF 138 (805)
Q Consensus 67 ~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g~~ 138 (805)
-+++++.++..+|.++.+..-.. . -...+.++++|.-. +++.-........+. ....|-.+..+. -+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 45789999999999988764321 1 24567888888643 444444444333321 133466666654 467889
Q ss_pred hHHHHHHHHHHhC--CCCC-----------Ccc-hHHHHHHHHhccCCccchhhHHHHHHHhCCC----CchhhHHHHHH
Q 039715 139 VEAVGLFSTLHRE--GHEL-----------NPF-AFTAFLKVLVSMGWAELCPCVFACVYKLGHD----SNAFVGTALID 200 (805)
Q Consensus 139 ~~A~~~~~~m~~~--g~~p-----------~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~ 200 (805)
.+|++.+..-.+. +-+| +.+ -=+.....+...|.+.+|+.++.+++..-++ -+..+||.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9999998887654 3332 222 2234566778999999999999888876544 78899999888
Q ss_pred HHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCC------CCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q 039715 201 AFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVG------FKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYE 274 (805)
Q Consensus 201 ~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 274 (805)
+|++.=-++--......+--..|+.++-...+|.... +.|-..-+..++....-.
T Consensus 176 mlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~------------------- 236 (549)
T PF07079_consen 176 MLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIV------------------- 236 (549)
T ss_pred HHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhC-------------------
Confidence 8887532222111111111222334444444443221 122222222222221110
Q ss_pred CcHhHHHHHHHHHHcCCChHHHHHHHhhCC-CCCcccHHHHHHHHHhC--CChhHHHHHHHHHHHCCCCC----ChhHHH
Q 039715 275 MDLYVAVALLDLYTKSGEISNARRIFEEMP-KKDVIPWSFMIARYAQT--DLSIDAVELFCRMRQAFVAP----NQFTFV 347 (805)
Q Consensus 275 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p----~~~t~~ 347 (805)
|.. +.--+-.+.+.|+.-- .|+ |+.+|..+... .+.+++..+-+.+....+.+ =..+|.
T Consensus 237 p~e-----------~l~~~mq~l~~We~~yv~p~---~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~ 302 (549)
T PF07079_consen 237 PKE-----------RLPPLMQILENWENFYVHPN---YDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFG 302 (549)
T ss_pred CHh-----------hccHHHHHHHHHHhhccCCc---hhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 000 0000112222222110 111 22222222211 14444444444433221110 123566
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHH
Q 039715 348 SVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGK 427 (805)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 427 (805)
.++..+.+.++...|.+.+..+.-. .|+..+..-|+ -..+.+..|...|-..++.+ ..
T Consensus 303 ~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kll----------ls~~~lq~Iv~~DD~~~Tkl----------r~ 360 (549)
T PF07079_consen 303 NLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLL----------LSPKVLQDIVCEDDESYTKL----------RD 360 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhh----------cCHHHHHHHHhcchHHHHHH----------HH
Confidence 6777777777777777776666543 33332222221 11222223322222222221 11
Q ss_pred HHHHHHHHhhcCCCCChhh-HHHHHHH---HhccC-CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHh
Q 039715 428 AMIMFSKMLEEQVPATEVT-YSSVLRA---CASLA-ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVF 502 (805)
Q Consensus 428 A~~~~~~m~~~g~~p~~~t-~~~ll~a---~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 502 (805)
=+.++.+.....+ |..- ...++.+ +-+.| .-+++..++..+.+-. +-|...-|... .+.
T Consensus 361 yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~-~fv------------ 424 (549)
T PF07079_consen 361 YLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVF-LFV------------ 424 (549)
T ss_pred HHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHH-HHH------------
Confidence 2223333322211 1110 0111111 11111 1333333333333321 11111111111 110
Q ss_pred hhcCCCCHhHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHH--HHcCCCHHHHHHHHHHHHH
Q 039715 503 DMMNDWNEVSWNAMISGYSM---HGLSAEVLKVFDLMQQRGWRPNN----LTFVGVLSA--CSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 503 ~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a--~~~~g~~~~a~~~~~~m~~ 573 (805)
=.+|.+ .....+-+.+-+-..+.|+.|-. ..-+.+.+| +...|++.++.-+-..+.
T Consensus 425 --------------Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~- 489 (549)
T PF07079_consen 425 --------------KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT- 489 (549)
T ss_pred --------------HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-
Confidence 011211 12233444555555677887733 334445555 456799999987765555
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHH
Q 039715 574 NYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRAL 619 (805)
Q Consensus 574 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l 619 (805)
.+.|++.+|.-++-.+....+++||.+++..+| |+..+|++-
T Consensus 490 --~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 490 --KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred --HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 589999999999999999999999999999998 677777654
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.34 E-value=0.0021 Score=52.72 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
.+..+...+...|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3344444444455555555554432 1112 234566666666666777777777777766665
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.32 E-value=0.25 Score=50.51 Aligned_cols=100 Identities=8% Similarity=0.101 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-----HH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCCC--hHH
Q 039715 513 WNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-----NL-TFVGVLSACSNGGLLEQGEAYFKSMVANY-GIEPC--IEH 583 (805)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~ 583 (805)
+..++..+.+.|++++|+++|++....-...+ .. .|...+-.+...|+...|...++...... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34466777888888888888888776433221 11 23333335566788888888888776221 12222 234
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHcCCCCCCH
Q 039715 584 YTSMVSLLGR--AGHLDKAAKLIEGIPFQPSV 613 (805)
Q Consensus 584 ~~~li~~~~~--~g~~~eA~~~~~~~~~~p~~ 613 (805)
...|++++-. ...+++|..-|+++. +.|.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~ 268 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDN 268 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS----H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC-ccHH
Confidence 5566666653 456777777777775 3444
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.32 E-value=0.00041 Score=52.76 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=46.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 619 LLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...+...|++++|+..++++++..|+++.++..+|.++...|++++|..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 52 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALA 52 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 55678899999999999999999999999999999999999999999976
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.30 E-value=0.00078 Score=54.38 Aligned_cols=80 Identities=15% Similarity=0.241 Sum_probs=48.0
Q ss_pred CCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 039715 523 HGLSAEVLKVFDLMQQRGWR-PNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA 600 (805)
+|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. . ...|+ ....-.++..|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 56777777777777774321 1333444466677777777777777766 2 22232 23333446777777777777
Q ss_pred HHHHHc
Q 039715 601 AKLIEG 606 (805)
Q Consensus 601 ~~~~~~ 606 (805)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.28 E-value=0.0017 Score=60.85 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
...+..++..|.+.|++++|...+++. +..++ ...|..++..+...|++++|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666677777777777777777655 21122 4578889999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHh
Q 039715 656 IYAMARSWEKAA 667 (805)
Q Consensus 656 ~~~~~g~~~~a~ 667 (805)
+|...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 999999876654
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.28 E-value=0.012 Score=52.54 Aligned_cols=90 Identities=8% Similarity=-0.000 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMV 588 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 588 (805)
...-.+..-+.+.|++++|..+|+-+.. +.|... -|..|..+|...|++++|+..|.... .+.| ++..+-.+.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHH
Confidence 3333444445555666666666665555 444333 33444444555566666666665554 2333 344555555
Q ss_pred HHHHhcCCHHHHHHHHH
Q 039715 589 SLLGRAGHLDKAAKLIE 605 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~ 605 (805)
..|.+.|+.++|++-|+
T Consensus 111 ~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 111 ECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 55555555555555554
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.27 E-value=0.00029 Score=54.21 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=26.8
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..|++++|+..++++++.+|+++.+...++.+|.+.|++++|.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 46 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEE 46 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666666666666666666666666666666666655
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.24 E-value=0.021 Score=51.58 Aligned_cols=123 Identities=10% Similarity=0.112 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHcC----C--CCCCH
Q 039715 541 WRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI-EPCIEHYTSMVSLLGRAGHLDKAAKLIEGI----P--FQPSV 613 (805)
Q Consensus 541 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~--~~p~~ 613 (805)
.-|....-..|..+....|+..+|...|++... |+ .-|....-.+..+....++..+|...++++ | -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 345555555566666777777777777766653 33 335555556666666667777777666654 1 12333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.-.+...+...|+.+.|+..++.++..-| ++..-...+..+.++|+.++|..
T Consensus 163 --~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 --HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred --hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 33456678888999999999999999888 56666778888999999888865
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0096 Score=60.55 Aligned_cols=135 Identities=14% Similarity=0.177 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSA-CSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
.+|-.++....+.+..+.|..+|.+.++.+ ......|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 357777777777777888888888887532 2234445544444 334567777999999999765 446778889999
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 590 LLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 590 ~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.+.+.|+.+.|..+|++. ..-|. ..+|...+.-=..+|+.+....+.+++.+.-|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999966 22233 358999999999999999999999999999987543
No 181
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.22 E-value=0.0012 Score=61.47 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=57.2
Q ss_pred chhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh---ccccHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039715 175 LCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL---FNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKA 251 (805)
Q Consensus 175 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 251 (805)
-....+..|.+.|++.|..+|+.|++.+=+ |.+- -+.+|+.+ ...+-+-|++++++|...|+.||..|+..++..
T Consensus 70 FI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~i 147 (228)
T PF06239_consen 70 FIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNI 147 (228)
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 333344445555555556666666655554 3222 33444444 223446789999999999999999999999999
Q ss_pred hhCCCCH-HHHHHHHHHHHH
Q 039715 252 CLGLDTI-RVAKSAHGCALK 270 (805)
Q Consensus 252 ~~~~~~~-~~a~~~~~~~~~ 270 (805)
+.+.+.. ...+++.=.|.+
T Consensus 148 FG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 148 FGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred hccccHHHHHHHHHHHHHHH
Confidence 8876643 334444434433
No 182
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.56 Score=51.91 Aligned_cols=339 Identities=12% Similarity=0.037 Sum_probs=158.7
Q ss_pred CCCCCChhhHHH-----HHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCC---ChHHHHHHHhhCCC--
Q 039715 236 VGFKPNNFTFAF-----VLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSG---EISNARRIFEEMPK-- 305 (805)
Q Consensus 236 ~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~~~~-- 305 (805)
-|+..+..-|.. ++.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+-+..+=+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 355555554443 3555556667777777766553222122 466666666666653 23334444444444
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCC----CCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHH
Q 039715 306 KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFV----APNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVS 381 (805)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 381 (805)
..-++|..+.+--.+.|+.+-|..+++.=...+- -.+-.-+...+.-+...|+.+...+++-.+...- +...+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH
Confidence 4566788888888888888888877653211110 0111223344444555566555555544443321 00000
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC-CChhhHHHHHHHHHHcCChHHHHHHHH--HHhh-cCCCCChhhHHHHHHHHhcc
Q 039715 382 NALMDVYAKCGRMENSVELFAESPK-RNHVTWNTMIVGYVQLGEVGKAMIMFS--KMLE-EQVPATEVTYSSVLRACASL 457 (805)
Q Consensus 382 ~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~-~g~~p~~~t~~~ll~a~~~~ 457 (805)
.....+...|..+|....+ .|..+ +-..| ++++-.+++.-|. .... ..+.+-........++|++.
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~s 651 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRHQDRAT---LYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKS 651 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHhhchhh---hhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhh
Confidence 1111122333344433211 11111 11112 1222222222111 1000 00112222233334444444
Q ss_pred CCchhHHHHHH----------HHH-HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCCh
Q 039715 458 AALEPGMQVHC----------LTV-KANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLS 526 (805)
Q Consensus 458 ~~~~~a~~~~~----------~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 526 (805)
....-..+..+ .+. +.|.....-+.+--+.-+...|+..+|.++-.+..-+|-..|---+.+++..+++
T Consensus 652 k~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kw 731 (829)
T KOG2280|consen 652 KEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKW 731 (829)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhH
Confidence 33221111111 111 1121111122222333344557777777777777766777777677777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039715 527 AEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 527 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
++-+++-+.+. .+.-|.-...+|.+.|+.++|..++-+.. +. . -.+.+|.+.|++.||.++-
T Consensus 732 eeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l---~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 732 EELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL---Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch---H----HHHHHHHHhccHHHHHHHH
Confidence 66555433322 13455556667777777777777654332 11 1 4566777777777766653
No 183
>PRK15331 chaperone protein SicA; Provisional
Probab=97.19 E-value=0.0031 Score=56.39 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGIP-F-QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSW 663 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 663 (805)
....-+...|++++|..+|.-+- . .-|..-|..|...|...+++++|+..|-.+..+.++||.++...|..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34455667899999999998552 1 235668999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
+.|..
T Consensus 122 ~~A~~ 126 (165)
T PRK15331 122 AKARQ 126 (165)
T ss_pred HHHHH
Confidence 99988
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.19 E-value=0.00052 Score=52.79 Aligned_cols=62 Identities=18% Similarity=0.271 Sum_probs=31.1
Q ss_pred hcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 593 RAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 593 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
..|++++|+++|+++ ...| +..++..++.+|...|++++|...+++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 345555555555543 1122 3445555555555555555555555555555555544444443
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.15 E-value=0.00091 Score=51.56 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHN-NVEIGRLSAQHILDFEP 644 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 644 (805)
++..|..++..+.+.|++++|+..|++. ...| ++..|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567778888888888888888888865 3445 4568999999999999 79999999999999988
No 186
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.14 E-value=0.0017 Score=65.36 Aligned_cols=251 Identities=13% Similarity=0.058 Sum_probs=142.2
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCC---CChhhHHHHHHHHhccCCchhHHHHHHHHH--Hc--CC-CCcHhHHHHHHHHH
Q 039715 418 GYVQLGEVGKAMIMFSKMLEEQVP---ATEVTYSSVLRACASLAALEPGMQVHCLTV--KA--NY-DMDVVVANALIDMY 489 (805)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~--~~--~~-~~~~~~~~~li~~y 489 (805)
-+++.|+....+.+|+..++.|.. .-...|..|.++|.-++++++|.++|..=+ .. |- .-.......|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 456667777777777777665521 112245556666666777777777654211 11 10 01122233344444
Q ss_pred HhcCCHHHHHHHhhhcCC-------C--CHhHHHHHHHHHHhCCC--------------------hHHHHHHHHHHHH--
Q 039715 490 AKCGSITDARLVFDMMND-------W--NEVSWNAMISGYSMHGL--------------------SAEVLKVFDLMQQ-- 538 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~-- 538 (805)
--.|.+++|.-.-.+-.. + ....+-.+...|...|+ .+.|.++|.+=++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666544322210 0 22244445555554442 2234444443222
Q ss_pred --cCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHH---HHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC----
Q 039715 539 --RGWR-PNNLTFVGVLSACSNGGLLEQGEAYFKSM---VANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI---- 607 (805)
Q Consensus 539 --~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~---- 607 (805)
.|-. .-...|..|...|.-.|++++|+..++.= .+.||-.. ....++.|...+.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1100 01124556666666678888888776542 23344333 2356778888888889999988887743
Q ss_pred -CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCChHHHhh
Q 039715 608 -PFQ---PSVMIWRALLGACIIHNNVEIGRLSAQHILDFE------PEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 608 -~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+. -.+-+..+|.++|....+++.|+....+-+.+. -....++-.|++.|...|..+.|..
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 111 123456788888888888888988877665532 2345677888999999998888876
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.41 Score=49.33 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 039715 483 NALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLE 562 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 562 (805)
+..+.-+...|+...|.++-.+..-+|..-|-..+.+|+..+++++-.++... +-.++.|-.++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455556778899999998888888999999999999999999877665332 224477888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 039715 563 QGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGAC 623 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~ 623 (805)
+|..+...+. +..-+.+|.++|.+.+|.+.--+.. |...+..+...|
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 9988875521 2456788999999999987755442 444444444433
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.09 E-value=0.015 Score=49.99 Aligned_cols=92 Identities=11% Similarity=0.100 Sum_probs=69.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHH
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQQRGWRPN--NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLL 591 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 591 (805)
.+..++-..|+.++|+.+|++..+.|+... ...+..+.+++...|++++|..+++.....+.-.+ +......+.-.+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 356678889999999999999999887665 33677888889999999999999999886542211 222333345577
Q ss_pred HhcCCHHHHHHHHHc
Q 039715 592 GRAGHLDKAAKLIEG 606 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~ 606 (805)
...|+.+||++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 889999999988754
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.09 E-value=0.063 Score=57.63 Aligned_cols=211 Identities=14% Similarity=0.139 Sum_probs=118.9
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh
Q 039715 366 HSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV 445 (805)
Q Consensus 366 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 445 (805)
++.+.+.|-.|+... +.+.++-.|++.+|.++|.+ +|.-..|+++|..|+--
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH-------
Confidence 455666676666543 44556778888888888754 45566677666666421
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCC
Q 039715 446 TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGL 525 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 525 (805)
-..+-+...|..++-+.+...-.+. ..+..--.+-.+|+...|+.++|..+. ..+|-
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW 731 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGW 731 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccH
Confidence 1122233333333333322211110 011111123345566667777776553 34555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 039715 526 SAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIE 605 (805)
Q Consensus 526 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~ 605 (805)
.+-++++-+++-. .+..+...+...+-+...+..|-++|.+|-. ...++++....|+++||..+-+
T Consensus 732 ~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 732 VDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred HHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhh
Confidence 5555555444432 2334454554455566667778888877652 2457788888888888888888
Q ss_pred cCC-CCCCHHH-HHHH----------HHHHHHcCCHHHHHHHHHHHhc
Q 039715 606 GIP-FQPSVMI-WRAL----------LGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 606 ~~~-~~p~~~~-~~~l----------~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
+.| +.||+.. |... -.+|.+.|+..+|..+++++..
T Consensus 798 ~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 798 KHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 876 4455421 2222 2456777888888888887754
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.04 E-value=0.044 Score=55.98 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=68.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHH
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNG-GLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSL 590 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~ 590 (805)
.+..|...|++..|-..+.++- ..|... |++++|.++|++..+-|..... ...+..++.+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 3445555666555555444443 345555 7788888877777655433322 2455667788
Q ss_pred HHhcCCHHHHHHHHHcCC---C-----CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 591 LGRAGHLDKAAKLIEGIP---F-----QPSVM-IWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~~---~-----~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
+.+.|++++|.++|++.. . +.++. .+-..+-.+...||...|.+.+++..+.+|.-
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 888999999998888651 1 11121 12222334556789999999999999988844
No 191
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.01 E-value=0.071 Score=55.28 Aligned_cols=163 Identities=13% Similarity=0.075 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCC---C----HhHHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDW---N----EVSWNAMISGYSM---HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
.|+-.|....+++...++.+.+... + ...-...+-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3344566777777777777776643 1 1122223445555 6888888888888666555677777776665
Q ss_pred HHH---------cCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHH----HHHHH---H----cC---CCC
Q 039715 554 ACS---------NGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDK----AAKLI---E----GI---PFQ 610 (805)
Q Consensus 554 a~~---------~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~e----A~~~~---~----~~---~~~ 610 (805)
.|- ....+++|...|.+.- .++|+..+--.++.++..+|...+ ..++. . +- .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 542 1234677777776543 566766554455555555554322 22222 0 00 123
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 611 PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 611 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
.|-..+.+++.++...|+.+.|.+++++++++.|+.-..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 455667899999999999999999999999998866443
No 192
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.01 E-value=0.0011 Score=45.66 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
.+|..+..+|...|+.++|+++++++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 368889999999999999999999999999999999888874
No 193
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.18 Score=51.61 Aligned_cols=146 Identities=12% Similarity=0.092 Sum_probs=65.7
Q ss_pred HHhCCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcC
Q 039715 520 YSMHGLSAEVLKVFDLMQQR---GWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAG 595 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 595 (805)
..++|++.+|.+.|.+.+.. +++|+...|.....+..+.|+.++|+.--+... .++|. +..|---...+.-.+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555541 112223334444444555555555555544443 23332 111222222333344
Q ss_pred CHHHHHHHHHcC-CCCCCH---HH---------------HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc--------
Q 039715 596 HLDKAAKLIEGI-PFQPSV---MI---------------WRALLGACIIHNNVEIGRLSAQHILDFEPEDEA-------- 648 (805)
Q Consensus 596 ~~~eA~~~~~~~-~~~p~~---~~---------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------- 648 (805)
.+++|.+-+++. ....+. .+ |-.+++.-+...+.+.....-+.++...|+-..
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~ 415 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEA 415 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHH
Confidence 555555555432 111111 11 222222222223333333333445555664322
Q ss_pred hHHHHHHHHHhcCChHHHhh
Q 039715 649 THVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 649 ~~~~l~~~~~~~g~~~~a~~ 668 (805)
-+...|+.|...++.+++.+
T Consensus 416 kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 416 KFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHHHHHHHHhcCHHHHhh
Confidence 24467888888888888776
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.062 Score=51.35 Aligned_cols=167 Identities=11% Similarity=0.028 Sum_probs=117.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC--CChh--------hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHH
Q 039715 381 SNALMDVYAKCGRMENSVELFAESPK--RNHV--------TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSV 450 (805)
Q Consensus 381 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 450 (805)
++.|...|.-..-+++-...|+.-.. ..+. .-+.++..+.-.|.+.-.+.++++.++...+.+....+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45566666555555555555544322 2222 3355666667778888888899999887766777778888
Q ss_pred HHHHhccCCchhHHHHHHHHHHcC-----CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHh
Q 039715 451 LRACASLAALEPGMQVHCLTVKAN-----YDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSM 522 (805)
Q Consensus 451 l~a~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 522 (805)
.+.-.+.|+.+.+...++.+.+.. +..+..+.......|.-++++..|...|++++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888889999999999999777643 333444444555567778888899999988874 367777777777777
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHH
Q 039715 523 HGLSAEVLKVFDLMQQRGWRPNNLTFV 549 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~~p~~~t~~ 549 (805)
.|+..+|++..+.|.+ ..|...+-.
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhh
Confidence 8999999999999998 456544433
No 195
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.89 E-value=0.63 Score=47.42 Aligned_cols=116 Identities=14% Similarity=0.051 Sum_probs=50.7
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHH----HHHHhhCCCCCcccHHHHHHHHHhCCChh
Q 039715 250 KACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNA----RRIFEEMPKKDVIPWSFMIARYAQTDLSI 325 (805)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A----~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 325 (805)
+++.+.|++.++-.+++.+-+..++|+.. ++..+.+.|+.... .+-+..|...+..+--.+..+-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 44455555555555555555554444321 12223344432211 11233444444445445555555555554
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHH-hccCCchHHHHHHHHHHH
Q 039715 326 DAVELFCRMRQAFVAPNQFTFVSVLQAC-ATMEGLDLGNQIHSLVVR 371 (805)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~ 371 (805)
.|..--+...+ ..|....|..+...- +..||-.++.+.+.+.++
T Consensus 347 ~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 347 AARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 44433333322 234444444444432 223455555555444444
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.022 Score=56.21 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=73.9
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHc-C--CHHHHHHHHHHHhccCCCCcchHH
Q 039715 578 EP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF-QPSVMIWRALLGACIIH-N--NVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 578 ~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
.| |.+.|.-|...|.+.|+.+.|..-|.+. .+ .+|+..+..+..++..+ | ...++..+++++++++|+|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 6788999999999999999999888765 22 24566777777775443 2 567888999999999999999999
Q ss_pred HHHHHHHhcCChHHHhh
Q 039715 652 LLSNIYAMARSWEKAAS 668 (805)
Q Consensus 652 ~l~~~~~~~g~~~~a~~ 668 (805)
.|+..+..+|++.+|..
T Consensus 232 lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 232 LLAFAAFEQGDYAEAAA 248 (287)
T ss_pred HHHHHHHHcccHHHHHH
Confidence 99999999999999987
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.85 E-value=0.002 Score=50.24 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=23.9
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 622 ACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 622 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.|...+++++|+++++++++++|+++..+...|.+|...|++++|.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~ 50 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALE 50 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHH
Confidence 34444555555555555555555555555555555555555555544
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.85 E-value=0.08 Score=52.46 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCh---h---hHHHHHHHHHHcCChHHHHHHHHHHhhcC
Q 039715 386 DVYAKCGRMENSVELFAESPKRNH---V---TWNTMIVGYVQLGEVGKAMIMFSKMLEEQ 439 (805)
Q Consensus 386 ~~y~~~g~~~~A~~~f~~~~~~~~---~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g 439 (805)
..+.+.|++++|.+.|+.+....+ . ..-.++.+|.+.+++++|...|++..+..
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 334556777777777766543211 1 12334556677777777777777776643
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.84 E-value=0.026 Score=57.45 Aligned_cols=133 Identities=16% Similarity=0.139 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHH-HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRA-CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMY 489 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 489 (805)
.|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+..++. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46666666666666777777777766432 1122222222222 22234555577777766664 355667777777777
Q ss_pred HhcCCHHHHHHHhhhcCCC------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 039715 490 AKCGSITDARLVFDMMNDW------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT 547 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 547 (805)
.+.|+.+.|+.+|++.... -...|...+.--.+.|+.+.+.++.+++.+ .-|+...
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~ 142 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNS 142 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-H
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhH
Confidence 7888888888888777632 234677777777777777777777777776 3444333
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.82 E-value=0.0088 Score=51.39 Aligned_cols=81 Identities=12% Similarity=-0.013 Sum_probs=51.5
Q ss_pred HHHHHhcCCHHHHHHHHHcCC---CCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 039715 588 VSLLGRAGHLDKAAKLIEGIP---FQP-S-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPE---DEATHVLLSNIYAM 659 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~~---~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 659 (805)
..++...|+.++|+.++++.- ... + ...+-.+.++++..|++++|+.++++.++-.|+ +....+.++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 344555666666666665431 111 1 234556667777777777777777777777676 55566667777777
Q ss_pred cCChHHHhh
Q 039715 660 ARSWEKAAS 668 (805)
Q Consensus 660 ~g~~~~a~~ 668 (805)
.|++++|.+
T Consensus 88 ~gr~~eAl~ 96 (120)
T PF12688_consen 88 LGRPKEALE 96 (120)
T ss_pred CCCHHHHHH
Confidence 777777755
No 201
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.82 E-value=0.011 Score=48.70 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHhh
Q 039715 223 FEEALNFFSQMRAVGFKPNNFTFAFVLKACL 253 (805)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 253 (805)
.-+.+.+++.|...+++|+..||+.++..+.
T Consensus 85 l~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 85 LTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 3467888899999999999999999988764
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.79 E-value=0.0037 Score=48.74 Aligned_cols=66 Identities=14% Similarity=0.237 Sum_probs=53.6
Q ss_pred HHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 588 VSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
-.+|.+.+++++|.+.++++ ...| ++..|...+..+...|++++|...++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35678888999999988876 3445 456788888899999999999999999999999887765544
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.78 E-value=0.0036 Score=65.37 Aligned_cols=56 Identities=14% Similarity=-0.019 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch---HHHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT---HVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~ 668 (805)
...|+.++.+|...|++++|+..++++++++|++..+ |.+++.+|..+|+.++|..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455666666666666666666666666666655533 5566666666666666555
No 204
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.76 E-value=0.048 Score=60.29 Aligned_cols=60 Identities=8% Similarity=0.045 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMV 572 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 572 (805)
..|.++.......|++++|...++++.+ +.|+...|..+...+...|+.++|...+++..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444555555555555555 33444445555555555555555555554444
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.70 E-value=0.98 Score=46.95 Aligned_cols=93 Identities=8% Similarity=0.163 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 039715 77 TIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTI---SFVTTIQGYTVSSQFVEAVGLFSTLHREGH 153 (805)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 153 (805)
++-+++.+. +.++..|-.||.-|...|..++-++++++|..|-+. .|..-|++-....+++....+|.+-....+
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 444444332 357788999999999999999999999999987554 799999998888999999999999887554
Q ss_pred CCCcchHHHHHHHHhccCCc
Q 039715 154 ELNPFAFTAFLKVLVSMGWA 173 (805)
Q Consensus 154 ~p~~~t~~~ll~~~~~~~~~ 173 (805)
. ...|..-|.-.-+..+.
T Consensus 108 ~--ldLW~lYl~YIRr~n~~ 125 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNL 125 (660)
T ss_pred c--HhHHHHHHHHHHhhCcc
Confidence 4 44555555544444433
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.69 E-value=0.011 Score=59.79 Aligned_cols=255 Identities=11% Similarity=0.043 Sum_probs=148.7
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChh----HHHHHHHHHhccCCchHHHHHHHHHHH--h--CCC-ccHHHHHHHHHH
Q 039715 317 RYAQTDLSIDAVELFCRMRQAFVAPNQF----TFVSVLQACATMEGLDLGNQIHSLVVR--V--GLL-SDVFVSNALMDV 387 (805)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~--~--g~~-~~~~~~~~Li~~ 387 (805)
-+++.|+....+.+|+..++.|.. |.. .|..+..+|.-.+++++|.++|..=+. . |-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 356667777777777777666532 332 344455556666677777776543221 1 100 011122234444
Q ss_pred HHhcCChHHHHHHHhc-------CCCC--ChhhHHHHHHHHHHcCC--------------------hHHHHHHHHHHhh-
Q 039715 388 YAKCGRMENSVELFAE-------SPKR--NHVTWNTMIVGYVQLGE--------------------VGKAMIMFSKMLE- 437 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~-------~~~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 437 (805)
+--.|.+++|.-.-.+ +-++ ....+..+...|...|+ ++.|.+.|.+=++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665543221 1111 12234445555555442 2334444433221
Q ss_pred ---cCCC-CChhhHHHHHHHHhccCCchhHHHHHHHHHH----cCCC-CcHhHHHHHHHHHHhcCCHHHHHHHhhhcC--
Q 039715 438 ---EQVP-ATEVTYSSVLRACASLAALEPGMQVHCLTVK----ANYD-MDVVVANALIDMYAKCGSITDARLVFDMMN-- 506 (805)
Q Consensus 438 ---~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-- 506 (805)
.|-. .--..|..|.+.|.-+|+++.+...|+.-+. .|-. .....+..|.++|.-.|+++.|.+.|....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1111 1123456666667778899999988875443 2321 234567888999999999999999887653
Q ss_pred -----CC--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 039715 507 -----DW--NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR----G-WRPNNLTFVGVLSACSNGGLLEQGEAYFKSMV 572 (805)
Q Consensus 507 -----~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 572 (805)
.+ ...+.-+|...|.-...+++|+.++.+-+.. + ..-....+.+|..++...|..++|..+.+.-+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 22 3456778888998888999999998875431 1 11234578899999999999999988766554
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.63 E-value=0.25 Score=44.85 Aligned_cols=124 Identities=12% Similarity=0.085 Sum_probs=78.4
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC----CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHH
Q 039715 476 DMDVVVANALIDMYAKCGSITDARLVFDMMND----WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN---NLTF 548 (805)
Q Consensus 476 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~ 548 (805)
.|++..--.|.......|+..+|...|++... .|....-.+..+....+++..|...++++.+.. |+ ..+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 34444455566666666777777766666542 355566666666667777777777777776632 32 2244
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039715 549 VGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 549 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
..+..++...|...+|+..|+.... .-|+...-.-...++.++|+.+||..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4555667777777777777777763 3466665555667777777777765443
No 208
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.61 E-value=0.049 Score=45.12 Aligned_cols=81 Identities=14% Similarity=0.168 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHhcCCCCChH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGW-RPNNLTFVGVLSACSNGG--------LLEQGEAYFKSMVANYGIEPCIE 582 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 582 (805)
+-...|.-+...|++.....+|+.+.+.|+ .|...+|+.++.+..+.. ++-+.+.+|+.|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666677999999999999999999 899999999999876532 345677888898866 8999999
Q ss_pred HHHHHHHHHHh
Q 039715 583 HYTSMVSLLGR 593 (805)
Q Consensus 583 ~~~~li~~~~~ 593 (805)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 209
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=1.3 Score=49.15 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=79.7
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCc---hHHHHHhccCCC--CCcchHHHHHHHHH
Q 039715 59 YATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRL---PDATKLFDEMPE--RNTISFVTTIQGYT 133 (805)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~f~~~~~--~~~~~~~~li~~~~ 133 (805)
...++.-....+.+..|.++-..+-..-... ..++.....-+.+..+. +-+..+=+++.. ..-++|..+.+---
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAY 518 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHH
Confidence 3344555666778888888876664332222 45666666666666332 223333334433 45678888888888
Q ss_pred cCCChhHHHHHHHHHHhCCCC----CCcchHHHHHHHHhccCCccchhhHHHHHHHh
Q 039715 134 VSSQFVEAVGLFSTLHREGHE----LNPFAFTAFLKVLVSMGWAELCPCVFACVYKL 186 (805)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 186 (805)
..|+++-|..+++.=...+-. .+-.-+...++-+...|+.+...+++-++...
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 889999998887764443311 24445667777888888888888777666543
No 210
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.60 E-value=0.016 Score=61.38 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=71.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHH
Q 039715 124 SFVTTIQGYTVSSQFVEAVGLFSTLHRE--GHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDA 201 (805)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 201 (805)
....++.......+.+++..++-+.+.. ....-+.|..++++.|.+.|..+.+..++..=...|+-||.+++|.||+.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3444455555555566666666666553 23333445567777777777777777777777777777777777777777
Q ss_pred HHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhC
Q 039715 202 FSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLG 254 (805)
Q Consensus 202 y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 254 (805)
+.+.|++..|.+++. .|...+...+..|+...+.+|.+
T Consensus 148 fl~~~~~~~A~~V~~---------------~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 148 FLKKGNYKSAAKVAT---------------EMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HhhcccHHHHHHHHH---------------HHHHhhccCCchHHHHHHHHHHH
Confidence 777776665555444 44444455555666665555544
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.58 E-value=0.02 Score=53.53 Aligned_cols=117 Identities=19% Similarity=0.171 Sum_probs=81.4
Q ss_pred CCChhhHHHHHHHhh-----CCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHH
Q 039715 239 KPNNFTFAFVLKACL-----GLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSF 313 (805)
Q Consensus 239 ~p~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 313 (805)
.-|..+|..++..+. +.|.++-....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~----------- 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA----------- 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-----------
Confidence 345666777766665 457888888899999999999999999999987754 2221 1111111
Q ss_pred HHHHHHh-CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCc-hHHHHHHHHHHH
Q 039715 314 MIARYAQ-TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGL-DLGNQIHSLVVR 371 (805)
Q Consensus 314 li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~ 371 (805)
.+.. ..+.+-|++++++|...|+.||..|+..++..+.+.+.. .+..++.-.|-+
T Consensus 111 ---~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 111 ---EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred ---HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 1111 234567999999999999999999999999999776653 334444444443
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.57 E-value=0.054 Score=54.09 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=54.9
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCC-CHHHHHHHHHHHHHcCCH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQP-SVMIWRALLGACIIHNNV 629 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 629 (805)
...|++++|...|+.+.+.|.-.+ ....+--++..|...|++++|...|+++ |..| ....|-.++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555666655555554431111 0234445556666666666666665544 2122 133455566667788888
Q ss_pred HHHHHHHHHHhccCCCCcch
Q 039715 630 EIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 630 ~~a~~~~~~~~~~~p~~~~~ 649 (805)
++|...++++++..|+...+
T Consensus 234 ~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHHHCcCCHHH
Confidence 88888888888888876543
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.56 E-value=0.45 Score=47.16 Aligned_cols=67 Identities=10% Similarity=-0.064 Sum_probs=43.8
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhh--HHHHHHHHhccCCchhHHHHHHHHHHcC
Q 039715 408 NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVT--YSSVLRACASLAALEPGMQVHCLTVKAN 474 (805)
Q Consensus 408 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 474 (805)
+...+-.....+.+.|++++|++.|+++...-..+.... ...+..++.+.++++.|...++..++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 444455566677789999999999999987533222111 1234556667777777777777776654
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.22 Score=47.75 Aligned_cols=169 Identities=8% Similarity=-0.030 Sum_probs=113.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC--C--------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMND--W--------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGV 551 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~--~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 551 (805)
+++|...|.-..-+++-...|+.-.. . -...-+.++..+.-+|.+.-.+.++++.++..-.-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555554444554444443322 1 2233456777777888888999999999996545567778888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcC----CCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCC-C-CHHHHHHHHHHHHH
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYG----IEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQ-P-SVMIWRALLGACII 625 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~-p-~~~~~~~l~~~~~~ 625 (805)
.+.-.+.|+.+.|..+|+...+..+ +.-...+...+...|.-+.++.+|...+.+++.. | |+..-|+-.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888999999999999997765422 2223334444455667788999999999888632 2 33333433333344
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchH
Q 039715 626 HNNVEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 626 ~g~~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
.|+...|++..+.+.+..|....+-
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhh
Confidence 6899999999999999999655443
No 215
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.45 E-value=1.4 Score=45.93 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=49.4
Q ss_pred CHHHHHHHHHH--HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 612 SVMIWRALLGA--CIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 612 ~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+..+-|-|..| +..+|++.++.....=+.++.| .+.+|-.+|-.+....+++||..
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH
Confidence 34566777777 6789999999999999999999 99999999999999999999987
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.43 E-value=0.0043 Score=49.17 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-------C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI-------P-FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDF 642 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 642 (805)
.|+.+...|.+.|++++|++.+++. + ..|+ ..++..++..+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555555555555555555433 1 1122 346777777788888888888888777654
No 217
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.42 E-value=0.034 Score=58.95 Aligned_cols=116 Identities=6% Similarity=0.042 Sum_probs=84.3
Q ss_pred cHhHHHHHHHHHHcCCChHHHHHHHhhCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 039715 276 DLYVAVALLDLYTKSGEISNARRIFEEMPKK------DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSV 349 (805)
Q Consensus 276 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 349 (805)
+......+++......+++.+..++-+.... -..+..++|+.|.+.|..++++.+++.=...|+-||.+|++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444445555555556666666666555421 1234568889999999999999999888889999999999999
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 039715 350 LQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKC 391 (805)
Q Consensus 350 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 391 (805)
+..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999988888877666666655555555544
No 218
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.34 E-value=1.1 Score=43.56 Aligned_cols=186 Identities=15% Similarity=0.109 Sum_probs=109.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMN-----DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
..........+...+.+..+...+.... ......+..+...+...+++.++++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555566666666666666665543 22444555556666666667777777777666332221 11222222
Q ss_pred -HHHcCCCHHHHHHHHHHHHHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC--HHHHHHHHHHHHH
Q 039715 554 -ACSNGGLLEQGEAYFKSMVANYGIEP----CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS--VMIWRALLGACII 625 (805)
Q Consensus 554 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~--~~~~~~l~~~~~~ 625 (805)
++...|.++++...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56667777777777776642 222 2233334444456667777777776654 22233 4566667777777
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 626 HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 626 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.++.+.|...+.++++..|+....+..++..+...|.++++..
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence 7777777777777777777655566666666666665666654
No 219
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.24 E-value=0.052 Score=54.22 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=48.4
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRPNN----LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG 595 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 595 (805)
.+.|++++|+..|+.+++. .|+. ..+..+..++...|++++|...|+.+.+.|.-.| ....+-.++..+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 4456666666666666663 3443 2455555666666666666666666665543322 2334444555566666
Q ss_pred CHHHHHHHHHcC
Q 039715 596 HLDKAAKLIEGI 607 (805)
Q Consensus 596 ~~~eA~~~~~~~ 607 (805)
+.++|.+.++++
T Consensus 232 ~~~~A~~~~~~v 243 (263)
T PRK10803 232 DTAKAKAVYQQV 243 (263)
T ss_pred CHHHHHHHHHHH
Confidence 666666666544
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.15 E-value=0.88 Score=43.78 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=25.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCCC--hhhHHHHHHHHhccCCchhHHHHHHHHHH
Q 039715 415 MIVGYVQLGEVGKAMIMFSKMLEEQVPAT--EVTYSSVLRACASLAALEPGMQVHCLTVK 472 (805)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 472 (805)
....+.+.|++++|+..|+++...-.... ......+..++.+.|+++.|...++..++
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445556666666666666655321111 11223334444445555555555544444
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.89 E-value=0.26 Score=51.95 Aligned_cols=61 Identities=11% Similarity=0.009 Sum_probs=33.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC-H---hHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMND--WN-E---VSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
+...++.+..+|.+.|++++|...|++..+ |+ . .+|..+..+|...|+.++|++.+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555556666666666666666655442 22 1 2355566666666666666666666555
No 222
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.88 E-value=0.1 Score=52.27 Aligned_cols=188 Identities=11% Similarity=0.038 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhh----hcC---CC--CHhHHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCCCH---HH
Q 039715 481 VANALIDMYAKCGSITDARLVFD----MMN---DW--NEVSWNAMISGYSMHGLSAEVLKVFDLMQQ-RGWRPNN---LT 547 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~----~~~---~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t 547 (805)
++..+.++.++.|++++++..-- ... +. -..+|-.+..++.+.-++.+++.+-+.-.. .|..|.. ..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 44555666666666666544321 111 11 123556666666666666666666554433 2333311 12
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCC--CC--ChHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC----
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGI--EP--CIEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPS---- 612 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~---- 612 (805)
..++..|....+.++++++.|+...+--.- +| ...+|-.|...|++..++++|.-+..+. .++.=
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 333555566667788899988887632111 12 2367888999999999998887665443 21111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCc----chHHHHHHHHHhcCChHHHhh
Q 039715 613 -VMIWRALLGACIIHNNVEIGRLSAQHILDF--EPEDE----ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~~~----~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..+.-.|.-+++..|..-.|.+..+++.++ ...|- .....++++|...|+.|.|.+
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence 123344556789999999999888888764 33333 334578999999999888766
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.87 E-value=2.7 Score=46.20 Aligned_cols=206 Identities=13% Similarity=0.052 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC-CCcc------------hHHHHHHHHHcCCC
Q 039715 71 DLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE-RNTI------------SFVTTIQGYTVSSQ 137 (805)
Q Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-~~~~------------~~~~li~~~~~~g~ 137 (805)
.+++|.++. +. .|.+.+|..|...-...-.++.|...|-+... +.+. --.+=|.+| -|.
T Consensus 678 gledA~qfi----Ed--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~ 749 (1189)
T KOG2041|consen 678 GLEDAIQFI----ED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGE 749 (1189)
T ss_pred chHHHHHHH----hc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcc
Confidence 355555552 22 35666676666555555556666666654432 1110 011112222 477
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCc----hhhHHHHHHHHHhcCCHHHHHH
Q 039715 138 FVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSN----AFVGTALIDAFSVCGCVEFARK 213 (805)
Q Consensus 138 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~ 213 (805)
+++|.++|-.|-+..+ .+....+.|++-...+++ ...|-..| ...++.+-..++....+++|.+
T Consensus 750 feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~---r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLI---RNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHH---HccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877765432 233333444443332222 11111111 1344445555555555555555
Q ss_pred HHhhhccccHH---HH---HHHHHHHHH--CCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 039715 214 VFDGLFNDCFE---EA---LNFFSQMRA--VGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLD 285 (805)
Q Consensus 214 ~~~~~~~g~~~---~A---~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 285 (805)
.+..- |+.+ ++ ++.|.++.. ..+.-|....-.+...+.+.|.-++|.+.|-. .+.+ . +.+.
T Consensus 818 yY~~~--~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p-k-----aAv~ 886 (1189)
T KOG2041|consen 818 YYSYC--GDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP-K-----AAVH 886 (1189)
T ss_pred HHHhc--cchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc-H-----HHHH
Confidence 55422 1111 11 122222211 12233344444555566666666665554422 2211 1 2334
Q ss_pred HHHcCCChHHHHHHHhhCCCCC
Q 039715 286 LYTKSGEISNARRIFEEMPKKD 307 (805)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~~~ 307 (805)
.+...+++.+|.++-++..-|.
T Consensus 887 tCv~LnQW~~avelaq~~~l~q 908 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQLPQ 908 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchh
Confidence 4555556666666655544443
No 224
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.84 E-value=2 Score=41.80 Aligned_cols=196 Identities=12% Similarity=0.059 Sum_probs=127.1
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHH-HH
Q 039715 446 TYSSVLRACASLAALEPGMQVHCLTVKA-NYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMIS-GY 520 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~~ 520 (805)
.+......+...+.+..+...+...... ........+..+...+...+++..+.+.+...... +...+..... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3334444444444444444444444331 22334455555666666667777777777766542 1122333333 67
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRP----NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG 595 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 595 (805)
...|++++|...|++... ..| ....+......+...++.+++...+...... ... ....+..+...+...|
T Consensus 141 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 141 YELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 888999999999998865 344 2334444444467788999999998888743 222 3677888888888999
Q ss_pred CHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 596 HLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 596 ~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
.+++|...+... ...|+ ...+..+...+...|+.+.+...+.+.++..|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999888766 23444 455666666666777899999999999999986
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.83 E-value=0.73 Score=44.37 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=86.7
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCC------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHH
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDW------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN--LTFVGVLSAC 555 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~ 555 (805)
.....+...|++++|.+.|+.+... -..+.-.++.++-+.|++++|+..|++.++. -|+. ..+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHH
Confidence 3344556667777777777776531 2334555666777777777777777777763 3332 2222222221
Q ss_pred Hc-------------CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHH--HHHHH
Q 039715 556 SN-------------GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMI--WRALL 620 (805)
Q Consensus 556 ~~-------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~--~~~l~ 620 (805)
+. .+...+|...|+.++.+| =......+|...+..+. +... =-.++
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y----------------P~S~y~~~A~~~l~~l~---~~la~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY----------------PNSEYAEEAKKRLAELR---NRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHC----------------cCchHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 11 112233444444444332 22333333433333221 0000 11233
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCChHHHh
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEA---THVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 667 (805)
.-|.+.|++..|..-++.+++--|+.+. +...|+..|.+.|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 4578889999999999999999887644 4567788899999888543
No 226
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.82 E-value=0.048 Score=46.10 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=64.4
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc----chHHHHHHHHHhcCC
Q 039715 589 SLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE----ATHVLLSNIYAMARS 662 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 662 (805)
-+++..|++++|++.|.+. .+- ..+..||.-..+++.+|+.++|+.-+++++++.-+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4577888999998888765 222 3567899999999999999999999999999865433 357888999999999
Q ss_pred hHHHhh
Q 039715 663 WEKAAS 668 (805)
Q Consensus 663 ~~~a~~ 668 (805)
-|+|..
T Consensus 131 dd~AR~ 136 (175)
T KOG4555|consen 131 DDAARA 136 (175)
T ss_pred hHHHHH
Confidence 998877
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=95.80 E-value=0.23 Score=52.46 Aligned_cols=139 Identities=12% Similarity=0.131 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHH---------cCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHh
Q 039715 526 SAEVLKVFDLMQQ-RGWRPNNL-TFVGVLSACS---------NGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGR 593 (805)
Q Consensus 526 ~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 593 (805)
.+.|+.+|.+... +.+.|+-. .|..+...+. ......+|.+.-++.. .+.| |+.....++.++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 4578888888881 22677644 3333322211 1234456666666655 4566 67777888888888
Q ss_pred cCCHHHHHHHHHcC-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH--HHHHhcCChHHHhh
Q 039715 594 AGHLDKAAKLIEGI-PFQPSV-MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS--NIYAMARSWEKAAS 668 (805)
Q Consensus 594 ~g~~~eA~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~ 668 (805)
.|+++.|..+|++. ...||. .+|......+...|+.++|.+..+++++++|....+-+.-- +.|.. ...++|.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 88899999999977 467764 57888888888999999999999999999997665544433 34554 44667666
No 228
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.71 E-value=0.017 Score=36.87 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
.+|..++..|...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999963
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.026 Score=57.79 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEEeeCCCCCc
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYFRAGDTSHA 693 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~ 693 (805)
..+.+|...|.+.+++.+|++..+++++++|+|.-++..-|.+|...|.++.|.. .|.......|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~---------------df~ka~k~~P 322 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARD---------------DFQKALKLEP 322 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHH---------------HHHHHHHhCC
Confidence 3456666667777777777777777777777777777777777777777777766 1222223446
Q ss_pred cHHHHHHHHHHHHHHHH
Q 039715 694 DMNIIRGMLEWLNMKSR 710 (805)
Q Consensus 694 ~~~~i~~~l~~l~~~~~ 710 (805)
....|...|..+..+++
T Consensus 323 ~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 323 SNKAARAELIKLKQKIR 339 (397)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 66666665555554444
No 230
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.55 E-value=0.03 Score=35.70 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
..|..++..+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 468889999999999999999999999999975
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.52 E-value=0.013 Score=46.27 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCC---CcchHHHHHHHHHhcCChHHHhh
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDF----EPE---DEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+++.+...|...|++++|+..+++++++ .++ -..++..+|.+|...|++++|.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 67 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE 67 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 47899999999999999999999999874 222 24567889999999999999976
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.34 E-value=0.4 Score=43.32 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hcCCCCChHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVA----NYGIEPCIEH 583 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 583 (805)
....++..+...|++++|+.+.+++... .| |...+..++.++...|+..+|.+.|+.+.. .+|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4555667777888888888888888884 45 566888888888888888888888877643 4577787654
No 233
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.55 Score=46.56 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC---CHHHHHHHHHcC-CCCC-CHHHHHH
Q 039715 545 NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG---HLDKAAKLIEGI-PFQP-SVMIWRA 618 (805)
Q Consensus 545 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~p-~~~~~~~ 618 (805)
...|..|..+|...|+.+.|..-|....+ +.| ++..+..+...+..+. ...++.++|+++ ...| |+....-
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 34555555555555555555555555542 222 3444444444443321 334555666554 2334 3445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 039715 619 LLGACIIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
|...+...|++.+|...++.+++..|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 55667788888888888888888776443
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.13 E-value=0.29 Score=42.59 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 541 WRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 541 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
+.|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5567777777777777777777777777777777776666666666654
No 235
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.02 E-value=5.4 Score=41.76 Aligned_cols=81 Identities=11% Similarity=0.012 Sum_probs=56.9
Q ss_pred CCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC--CCcchHHHHHH
Q 039715 53 EFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE--RNTISFVTTIQ 130 (805)
Q Consensus 53 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~ 130 (805)
+.|..+|..+++-+..++..+..++++.++...-+ --..+|..-++.=....++.....+|.+-.. -+...|..-+.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp-~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~ 117 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP-IMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLE 117 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc-cccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHH
Confidence 34567899999999999999999999999865322 2234555555554555777888888877543 36667877776
Q ss_pred HHHc
Q 039715 131 GYTV 134 (805)
Q Consensus 131 ~~~~ 134 (805)
---+
T Consensus 118 YIRr 121 (660)
T COG5107 118 YIRR 121 (660)
T ss_pred HHHh
Confidence 5544
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.02 E-value=0.39 Score=42.23 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=46.2
Q ss_pred HHHHHhcCCHHHHHHHHHcC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 588 VSLLGRAGHLDKAAKLIEGI----PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.....+.|++++|.+.|+.+ |..|- .-.--.|+.+|.+.|++++|...+++.+++.|.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34455678888888877765 43332 235566888999999999999999999999998765
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.94 E-value=0.52 Score=41.46 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhccCCCCc
Q 039715 629 VEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~ 647 (805)
...|...|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 6678888889998888664
No 238
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=9 Score=43.52 Aligned_cols=180 Identities=14% Similarity=0.045 Sum_probs=105.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHH----HHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHh
Q 039715 93 ATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQG----YTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLV 168 (805)
Q Consensus 93 ~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 168 (805)
....-|+++.+..-++.|..+-..-.. +...-..+... +-+.|++++|...|-+-... +.|. .+++-+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 345667778888888888887765433 22222233333 45689999999888776542 2332 3344444
Q ss_pred ccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHH
Q 039715 169 SMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFV 248 (805)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 248 (805)
.......-...++.+.+.|+. +..--+.|+..|.+.++.+.-.+..+....|.+ .+-.-..
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~------------------~fd~e~a 469 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEW------------------FFDVETA 469 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcce------------------eeeHHHH
Confidence 433444444566777777863 344557899999999999877776664321111 1123344
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC
Q 039715 249 LKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK 306 (805)
Q Consensus 249 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 306 (805)
+..|.+.+-+++|..+-.... ....+...+ +-..|++++|.+.+..++-.
T Consensus 470 l~Ilr~snyl~~a~~LA~k~~-----~he~vl~il---le~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 470 LEILRKSNYLDEAELLATKFK-----KHEWVLDIL---LEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHhChHHHHHHHHHHhc-----cCHHHHHHH---HHHhcCHHHHHHHHhcCCHH
Confidence 455555555555544432221 123333333 34568899999999998743
No 239
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.75 E-value=5.5 Score=40.50 Aligned_cols=98 Identities=9% Similarity=0.067 Sum_probs=44.9
Q ss_pred hHHHHHHHHhccCCchh---HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHH
Q 039715 446 TYSSVLRACASLAALEP---GMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISG 519 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 519 (805)
++..+..++...+..+. +..+.+.+... .+..+.++-.-++...+.++.+++.+++.+|... ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 34444555555444333 33333333222 1222333333445555566667777776666522 22344444443
Q ss_pred H---HhCCChHHHHHHHHHHHHcCCCCCH
Q 039715 520 Y---SMHGLSAEVLKVFDLMQQRGWRPNN 545 (805)
Q Consensus 520 ~---~~~g~~~~A~~l~~~m~~~g~~p~~ 545 (805)
+ ..+ ....|...++.++...+.|..
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 3 332 234555666665554455543
No 240
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.74 E-value=9.3 Score=43.07 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=50.5
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc
Q 039715 277 LYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACAT 355 (805)
Q Consensus 277 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 355 (805)
..++..+|+.+.-.|++++|-...-.|...+...|.--+..+...++......+ +.....+.+...|-.+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 456777888888888888888888888887777787777777777766543332 2222122344556666666654
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=94.60 E-value=0.38 Score=50.88 Aligned_cols=109 Identities=9% Similarity=0.012 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHh---------cCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcC
Q 039715 560 LLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGR---------AGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHN 627 (805)
Q Consensus 560 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~---------~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 627 (805)
..+.|..+|.+......++|+ ...|..+...+.. .....+|.++.++. ...| |+.....++.+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456788888888755567775 3455555443321 23445666666644 3344 6777778888888889
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 628 NVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 628 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.+.|...+++++.++|+.+.++...|.+..-.|+.++|.+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999987
No 242
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.33 E-value=15 Score=43.65 Aligned_cols=247 Identities=13% Similarity=0.116 Sum_probs=119.9
Q ss_pred CchhhHHHHHHHHHhcC--CHHHHHHHHhhhc----cccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHH
Q 039715 190 SNAFVGTALIDAFSVCG--CVEFARKVFDGLF----NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKS 263 (805)
Q Consensus 190 ~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 263 (805)
|+ .-.-.+|..|.+.+ .++.|.....+++ .-..++|++.+.-+ .+....|+..|..| +++.|..
T Consensus 789 ~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~L-----vdvn~lfn~ALgtY----Dl~Lal~ 858 (1265)
T KOG1920|consen 789 PD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFL-----VDVNELFNSALGTY----DLDLALL 858 (1265)
T ss_pred cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhh-----ccHHHHHHhhhccc----chHHHHH
Confidence 44 45567888888887 6777766666553 22233333333322 22333444444332 4444444
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHH-------------cCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHH
Q 039715 264 AHGCALKTCYEMDLYVAVALLDLYT-------------KSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVEL 330 (805)
Q Consensus 264 ~~~~~~~~g~~~~~~~~~~li~~y~-------------~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (805)
+-+.-. .|+.-|-.+++-+- ..+++++|+.-+.++. ...|.-.+..--+.|.+.+|+.+
T Consensus 859 VAq~Sq-----kDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l 930 (1265)
T KOG1920|consen 859 VAQKSQ-----KDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL 930 (1265)
T ss_pred HHHHhc-----cChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe
Confidence 333221 12222222221111 1244555555555543 22344444444455666666655
Q ss_pred HHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChh
Q 039715 331 FCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHV 410 (805)
Q Consensus 331 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 410 (805)
+ .|+...+..+..+|+.. +.+.. .++-..-+|.++|+.++|.+.
T Consensus 931 y--------~~~~e~~k~i~~~ya~h------------L~~~~------~~~~Aal~Ye~~GklekAl~a---------- 974 (1265)
T KOG1920|consen 931 Y--------KPDSEKQKVIYEAYADH------------LREEL------MSDEAALMYERCGKLEKALKA---------- 974 (1265)
T ss_pred e--------ccCHHHHHHHHHHHHHH------------HHHhc------cccHHHHHHHHhccHHHHHHH----------
Confidence 3 56666666555554321 11111 122233456677777776543
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh--hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV--TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDM 488 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 488 (805)
|...|++.+|+.+-.+|.. .-|.. +-..|..-+...++.-+|-++....... ..--+..
T Consensus 975 --------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~l 1035 (1265)
T KOG1920|consen 975 --------YKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVAL 1035 (1265)
T ss_pred --------HHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHH
Confidence 4456777777777666632 11221 1134445555556555555554443321 1233456
Q ss_pred HHhcCCHHHHHHHhhhcCCCC
Q 039715 489 YAKCGSITDARLVFDMMNDWN 509 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~~~~ 509 (805)
|++...+++|.++-......|
T Consensus 1036 l~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1036 LCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred HhhHhHHHHHHHHHHhcccch
Confidence 777777777777765554333
No 243
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.27 E-value=0.62 Score=40.54 Aligned_cols=81 Identities=22% Similarity=0.339 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHH--------------HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC----
Q 039715 546 LTFVGVLSACSNGGLLEQGEAYFKSM--------------VANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI---- 607 (805)
Q Consensus 546 ~t~~~ll~a~~~~g~~~~a~~~~~~m--------------~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~---- 607 (805)
.++..++-++++.|+++....+.+.. .....+.|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34444555555555555544444322 112245577788888888888888888888887644
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q 039715 608 PFQPSVMIWRALLGACIIH 626 (805)
Q Consensus 608 ~~~p~~~~~~~l~~~~~~~ 626 (805)
+++-+...|..|+.=+...
T Consensus 83 ~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4444567788887655443
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.16 E-value=0.48 Score=42.76 Aligned_cols=54 Identities=22% Similarity=0.145 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
....++..+...|++++|+..+++++..+|-+...|..+..+|...|+..+|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~ 117 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALR 117 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 456677778889999999999999999999999999999999999999999866
No 245
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.52 Score=48.63 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=89.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCC
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGH 596 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 596 (805)
...|.+.|++..|...|++.... -+ +...-..++..... . .-...+..|.-.|.+.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhhh
Confidence 55677788888888888776652 11 11111112222211 1 123456777888889999
Q ss_pred HHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 597 LDKAAKLIEGI-PF-QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 597 ~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.+|++..++. .. .+|+-..-.=+.+|...|+++.|+..|+++++++|+|-.+..-|..+-.+..++.+..+
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887755 22 34666666778889999999999999999999999998888888777666666555544
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.07 E-value=3.7 Score=43.77 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=47.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCC--CCCH--HHHHHHHHHHHHcCC-
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPF--QPSV--MIWRALLGACIIHNN- 628 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~--~p~~--~~~~~l~~~~~~~g~- 628 (805)
.+.+.|+.++|++.|++|.+.+.......+...|+..|...+.+.++..++.+-.. -|.. ..|++.+--.+.-|+
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~ 347 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDK 347 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccc
Confidence 33445555555555555554322111223444555555555555555555544320 1222 234333323332222
Q ss_pred --------------HHHHHHHHHHHhccCCCCcchH
Q 039715 629 --------------VEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 629 --------------~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
-..|.++..++.+.+|..+...
T Consensus 348 fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 348 FSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred cCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 1346788999999999665543
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.04 E-value=3 Score=40.62 Aligned_cols=160 Identities=16% Similarity=0.099 Sum_probs=87.5
Q ss_pred HhcCCHHHHHHHhhhcCCC------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---CC-
Q 039715 490 AKCGSITDARLVFDMMNDW------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSN---GG- 559 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g- 559 (805)
.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++....-..-...-|...|.+++. ..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 3557788888888777643 2233444556677788888888888887773222122334433433331 11
Q ss_pred ---C---HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHH-H-HHHHHHHHHcCCHHH
Q 039715 560 ---L---LEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMI-W-RALLGACIIHNNVEI 631 (805)
Q Consensus 560 ---~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~-~-~~l~~~~~~~g~~~~ 631 (805)
+ ..+|..-|+.++.+| |+.. -..+|...+..+. |... . .+...-|.+.|.+.-
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence 1 223333344444332 3211 1111111111110 1110 1 123345778888888
Q ss_pred HHHHHHHHhccCCCCc---chHHHHHHHHHhcCChHHHhh
Q 039715 632 GRLSAQHILDFEPEDE---ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 632 a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|..-++.+++--|+.+ .++..|.++|.+.|..++|.+
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 8888888888766544 345667788999999998887
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.98 E-value=0.43 Score=46.33 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=64.5
Q ss_pred HHHhccCC--CCCcchHHHHHHHHHcC-----CChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHH
Q 039715 111 TKLFDEMP--ERNTISFVTTIQGYTVS-----SQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACV 183 (805)
Q Consensus 111 ~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 183 (805)
++.|...+ ++|-.+|-+++..+... +..+--...++.|.+.|+.-|..+|..||+
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~Lln------------------ 115 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLN------------------ 115 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHH------------------
Confidence 34566665 56777777777666442 233333344555555555555555555554
Q ss_pred HHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh---ccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCC
Q 039715 184 YKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL---FNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDT 257 (805)
Q Consensus 184 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 257 (805)
.+-|..-.. ..+|+++ --..-+-+++++++|...|+.||..+-..++.++.+.+.
T Consensus 116 -----------------vfPKgkfiP--~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 116 -----------------VFPKGKFIP--QNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -----------------hCccccccc--HHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 443322211 1223322 001123478889999999999999999999999887765
No 249
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.89 E-value=3.3 Score=38.42 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHH-----HHHHHhcCCHHHH
Q 039715 528 EVLKVFDLMQQRGWRPNNLTFV--GVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSM-----VSLLGRAGHLDKA 600 (805)
Q Consensus 528 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~eA 600 (805)
+.....+++....-+....++. .+...+...|++++|...++..... |..+.+..+ ..+....|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5566666666643222222232 2344578899999999998876632 433444444 4567789999999
Q ss_pred HHHHHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 039715 601 AKLIEGIPFQPS--VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 601 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
+..++... .++ ...-..-+..+...|+.++|+..|+++++.+++.+
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 99998875 343 22344455678999999999999999999886543
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=1.5 Score=43.49 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=77.5
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHH---HHHHHHcCCH
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRAL---LGACIIHNNV 629 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l---~~~~~~~g~~ 629 (805)
.....|+..++...|+..... .| +...--.|+..|...|+.++|..++..+|.+-...-|..+ +..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345678888888888887743 33 3456667888899999999999999998855444344332 2222222222
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 630 EIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 630 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+. ..+++-+.-+|+|...-..|+..|...|+.++|.+
T Consensus 220 ~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale 257 (304)
T COG3118 220 PEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALE 257 (304)
T ss_pred CCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 211 23445567789999999999999999999999987
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.60 E-value=2.7 Score=37.53 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRA-GHLDKAAKLIEGIPFQPSVMIWRALLGACI 624 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~ 624 (805)
...++..|.+.+.++++..++.++.. +...++.+... ++.+.|.+++.+. .+...|..++..|.
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 33455556666666666665544321 11222333333 6666676666653 24556666665554
No 252
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.57 E-value=14 Score=40.60 Aligned_cols=184 Identities=13% Similarity=0.113 Sum_probs=131.0
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
++..+|...++--.+.|+.+.+.-+|++..-+ =...|-..+.-....|+.+-|-.++....+--++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35678888888888999999999999988754 334566666666666998888888887776544433333333333
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHH---HHHHcC-CCCCCHHHHHHHHHH-----H
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPCI-EHYTSMVSLLGRAGHLDKAA---KLIEGI-PFQPSVMIWRALLGA-----C 623 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~---~~~~~~-~~~p~~~~~~~l~~~-----~ 623 (805)
-+-..|+.+.|..+++.+...+ |+. ..-.--+.+..|.|..+.+. +++... +.+-+..+...+.-- +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4677899999999999998763 654 33344467788899999988 555543 223333333322221 4
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSW 663 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 663 (805)
...++.+.|..++.++.+..|++...|..+.++...++..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 5578999999999999999999999999999887766633
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.38 E-value=6.2 Score=38.51 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=42.8
Q ss_pred HhcCChHHHHHHHhcCCCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHh
Q 039715 389 AKCGRMENSVELFAESPKRN------HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACA 455 (805)
Q Consensus 389 ~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 455 (805)
.+.|++++|.+.|+.+..+. ..+--.++-++-+.+++++|+..+++....-..-...-|..-|.+.+
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 36678888888887776532 22334456677788888888888888877543333344555555544
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.17 E-value=2.7 Score=37.48 Aligned_cols=126 Identities=15% Similarity=0.143 Sum_probs=82.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCCh
Q 039715 59 YATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQF 138 (805)
Q Consensus 59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 138 (805)
...++..+...+.+......+..+++.+. .++...|.|+..|++.. .......|.. ..+......+++.+.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 45677777777889999999999988874 67889999999999864 3344455542 23445566688888888888
Q ss_pred hHHHHHHHHHHhCCCCCCcchHHHHHHHHhcc-CCccchhhHHHHHHHhCCCCchhhHHHHHHHHH
Q 039715 139 VEAVGLFSTLHREGHELNPFAFTAFLKVLVSM-GWAELCPCVFACVYKLGHDSNAFVGTALIDAFS 203 (805)
Q Consensus 139 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 203 (805)
+++.-++.++.. +...+..+... ++.+.|.+.... ..+...|..++..+.
T Consensus 86 ~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 888888877744 22333333333 555555554443 124456666665544
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.08 E-value=1.3 Score=43.18 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=66.4
Q ss_pred ChhhHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHH
Q 039715 55 NSHSYATSLQSCI-----QNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTI 129 (805)
Q Consensus 55 ~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 129 (805)
|-.+|...+..+. ++++.+---..+..|.+-|++.|..+|+.||+.+-|..-.. -|.+-
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP----------------~nvfQ 129 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP----------------QNVFQ 129 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc----------------HHHHH
Confidence 3445555554432 34566666666777888888888888888888765432211 11122
Q ss_pred HHHHcC-CChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCC
Q 039715 130 QGYTVS-SQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGW 172 (805)
Q Consensus 130 ~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 172 (805)
..+..- .+-.-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 222211 1224588999999999999999999999999887663
No 256
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.05 E-value=0.14 Score=32.45 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
.+|..+...|...|++++|...++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 367888888999999999999999999999853
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=3.6 Score=39.48 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhh----ccccHHHHHHHHHHHH
Q 039715 192 AFVGTALIDAFSVCGCVEFARKVFDGL----FNDCFEEALNFFSQMR 234 (805)
Q Consensus 192 ~~~~~~li~~y~~~g~~~~A~~~~~~~----~~g~~~~A~~~~~~m~ 234 (805)
+..++.-..+|..+|..+.|-..+++. .+-++++|+.++++-.
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 356677788899999999888887765 5667777777776643
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=0.86 Score=44.66 Aligned_cols=82 Identities=22% Similarity=0.272 Sum_probs=37.2
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCC
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRPN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGH 596 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~ 596 (805)
+.|++.+|...|...++.. |+ ...+-.|..++...|++++|..+|..+.+.|+-.|. ++.+--|+....+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 3344555555555555532 22 113344455555555555555555555544433332 2333344444444444
Q ss_pred HHHHHHHHH
Q 039715 597 LDKAAKLIE 605 (805)
Q Consensus 597 ~~eA~~~~~ 605 (805)
.++|...++
T Consensus 231 ~d~A~atl~ 239 (262)
T COG1729 231 TDEACATLQ 239 (262)
T ss_pred HHHHHHHHH
Confidence 444444443
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.76 E-value=15 Score=38.80 Aligned_cols=154 Identities=8% Similarity=-0.071 Sum_probs=87.0
Q ss_pred CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC--hH
Q 039715 508 WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP---NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC--IE 582 (805)
Q Consensus 508 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 582 (805)
....+|..++..+.+.|+++.|...+.++...+..+ .......-....-..|+-.+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 355678888899999999999999998888743222 2233334445566778888888888877752 11111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-HHcCCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 583 HYTSMVSLLGRAGHLDKAAKL-IEGIPFQPSVMIWRALLGACIIH------NNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
....+...+.. ..+..... ........-...+..+..-+... ++.+++...|+++.++.|+....+..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000012333333333344 78899999999999999999889988888
Q ss_pred HHHhcCChH
Q 039715 656 IYAMARSWE 664 (805)
Q Consensus 656 ~~~~~g~~~ 664 (805)
.+...-..+
T Consensus 301 ~~~~~~~~~ 309 (352)
T PF02259_consen 301 FNDKLLESD 309 (352)
T ss_pred HHHHHHHhh
Confidence 776554433
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.72 E-value=0.71 Score=39.32 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=25.9
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 039715 519 GYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMV 572 (805)
Q Consensus 519 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 572 (805)
+++..|+.+.|++.|.+.+. +-| +...|+.-..++.-+|+.++|+.-+++..
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 34455555555555555554 233 33345555555555555555555544444
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.64 E-value=1.9 Score=46.65 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=87.7
Q ss_pred hHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCC
Q 039715 244 TFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDL 323 (805)
Q Consensus 244 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 323 (805)
-...++.-+-+.|..+.|.++-. |.. .-.++..++|+++.|.++-++.. +...|..|.....++|+
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCC
Confidence 35666666777788887777643 221 23455678999999999888765 55689999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhc
Q 039715 324 SIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAE 403 (805)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 403 (805)
.+-|.+.|++..+ |..++-.+...|+.+.-.++.+.....| -+|....++...|++++..+++.+
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999988653 5566666777788777777777776665 233444445555666666555543
No 262
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.55 E-value=8 Score=40.49 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=38.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC---Ch----hhHHHHHHHHHH---cCChHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 039715 385 MDVYAKCGRMENSVELFAESPKR---NH----VTWNTMIVGYVQ---LGEVGKAMIMFSKMLEEQVPATEVTYSSVLRAC 454 (805)
Q Consensus 385 i~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 454 (805)
+-.|-...+++.-.++.+.+... ++ ..-....-++.+ .|+.++|++++..+......++..||..+...|
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 33455666666666666665542 11 111122334445 677777777777755555566666666655544
No 263
>PRK15331 chaperone protein SicA; Provisional
Probab=92.54 E-value=2.1 Score=38.69 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=7.7
Q ss_pred hCCChHHHHHHHHHHHH
Q 039715 522 MHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~ 538 (805)
+.|++++|..+|+-+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~ 65 (165)
T PRK15331 49 NQGRLDEAETFFRFLCI 65 (165)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 34444444444444443
No 264
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=24 Score=40.40 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=47.6
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCCcchHHHHHHHHHhcC
Q 039715 587 MVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILD-FEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g 661 (805)
++..+....+.+++..+.+... +-++..|-.++..+...+..+.-.+..+++++ +.-++.-.-..+.+++++.+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~ 785 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNG 785 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCC
Confidence 3455666777888888888776 34788899999988888866655555555544 33333333445556666555
No 265
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.45 E-value=19 Score=42.73 Aligned_cols=153 Identities=15% Similarity=0.192 Sum_probs=79.6
Q ss_pred cCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHh----ccCCchhHHHH
Q 039715 391 CGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACA----SLAALEPGMQV 466 (805)
Q Consensus 391 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~~ 466 (805)
.++++.|+.-+.++. ...|.-.+.---++|.+.+|+.++ +|+...+.-+..+|+ ....+++|
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~A--- 958 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEA--- 958 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHH---
Confidence 356777877776665 223444555556788889888775 566666655555443 22333333
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 039715 467 HCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL 546 (805)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 546 (805)
.-+|.++|+.++|.+.+ ...|++.+|+.+-.++.. .-|..
T Consensus 959 -------------------al~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~---~~de~ 998 (1265)
T KOG1920|consen 959 -------------------ALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSE---GKDEL 998 (1265)
T ss_pred -------------------HHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcC---CHHHH
Confidence 23466666666665443 334555555555554432 11111
Q ss_pred H--HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHc
Q 039715 547 T--FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEG 606 (805)
Q Consensus 547 t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 606 (805)
. -..|.+-+...++.-+|-++..+... +|. --+..|+++-.+++|..+...
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYLS----DPE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHhc----CHH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 1 12344445555555555555444332 121 223455555555666555443
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.39 E-value=3.2 Score=45.06 Aligned_cols=131 Identities=13% Similarity=0.034 Sum_probs=94.5
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCC
Q 039715 57 HSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSS 136 (805)
Q Consensus 57 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 136 (805)
...+.+++.+-+.|.++.|+++-. |+ ..-.....++|+++.|.+..++.. +...|..|.....++|
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcC
Confidence 446778888888889998888732 22 234566678999999999888876 5568999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 039715 137 QFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFD 216 (805)
Q Consensus 137 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 216 (805)
+++-|.+.|.+... |..|+-.+...|+.+.-.++-......| -+|.....+.-.|++++..+++.
T Consensus 362 ~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 362 NIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp BHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998876 5667777778888777777776666655 24555555666677777776665
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.34 E-value=3.8 Score=45.10 Aligned_cols=147 Identities=16% Similarity=0.077 Sum_probs=89.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHH----cCCCHHHHHHHHHHHHHhcCCCCChHH
Q 039715 514 NAMISGYSMHGLSAEVLKVFDLMQQRG-WRPNN-----LTFVGVLSACS----NGGLLEQGEAYFKSMVANYGIEPCIEH 583 (805)
Q Consensus 514 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~ 583 (805)
..++....-.|+-+.+++++.+..+.+ ++-.. ..|..++..+. .....+.+.++++.+..+| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 334444455566666666666654421 11111 12233333222 2456778888888887654 66554
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHcCCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH-HHHH
Q 039715 584 YTSM-VSLLGRAGHLDKAAKLIEGIPF------QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV-LLSN 655 (805)
Q Consensus 584 ~~~l-i~~~~~~g~~~eA~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~ 655 (805)
|.-. ..++...|++++|++.|++.-. +-....+--+.+.+...+++++|...+.++.+...-....|. ..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4433 4666778888888888885420 112234455566777889999999999999987776555554 4466
Q ss_pred HHHhcCCh
Q 039715 656 IYAMARSW 663 (805)
Q Consensus 656 ~~~~~g~~ 663 (805)
.|...|+-
T Consensus 349 c~~~l~~~ 356 (468)
T PF10300_consen 349 CLLMLGRE 356 (468)
T ss_pred HHHhhccc
Confidence 78888887
No 268
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.10 E-value=1.2 Score=43.68 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC-HHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS-VMIWRALL 620 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~-~~~~~~l~ 620 (805)
.|..-+..+ ..|++.+|.+-|...++.|.-.+ ....+--|+..+...|++++|...|..+ |..|- +...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344443332 44556666666666665542111 1233444666666666666666665544 32222 23344444
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcc
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
......|+.++|...++++++--|+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 5555666666666666666666665544
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.94 E-value=3.9 Score=43.65 Aligned_cols=53 Identities=9% Similarity=-0.015 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCChHHHhh
Q 039715 616 WRALLGACIIHNNVEIGRLSAQHILDFEPE--DEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 616 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
-..|...+++.|+.++|++.++.+++..|. +-..+..|.+.|...+++.|+..
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 344445555555555555555555554442 33445555555555555555555
No 270
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.87 E-value=0.23 Score=49.44 Aligned_cols=92 Identities=12% Similarity=0.091 Sum_probs=55.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCC-CHHHHHHHHHHHHHcCC
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP-FQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~ 628 (805)
..-|.++|.+++|+..|.... .+.| ++..|..-..+|.+..++..|+.=.+..- +.. -.-.|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 344667777777777776655 4455 66666666677777777766655444321 111 12234444444455667
Q ss_pred HHHHHHHHHHHhccCCCC
Q 039715 629 VEIGRLSAQHILDFEPED 646 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~ 646 (805)
.++|.+-++.+++++|++
T Consensus 181 ~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhHHHHHhhCccc
Confidence 777777777777777764
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.63 E-value=0.27 Score=31.79 Aligned_cols=29 Identities=10% Similarity=-0.058 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
+|..|...|...|++++|+.++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47788888999999999999999966543
No 272
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.58 E-value=8.8 Score=42.30 Aligned_cols=111 Identities=12% Similarity=0.056 Sum_probs=60.9
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHH-HHHHHHHHhcCCHHHHHHHhhhcCCC-------CHhHHHHHHHHHHhCCChHHHH
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVA-NALIDMYAKCGSITDARLVFDMMNDW-------NEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~ 530 (805)
..+.+.+++..+.+.- |+...+ ---..++...|++++|.+.|++.... ....+--+.-.+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3445555555555432 222222 22345566677788888877765421 2223334455566677888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCH-------HHHHHHHHHHH
Q 039715 531 KVFDLMQQRGWRPNNLTFVGVLSAC-SNGGLL-------EQGEAYFKSMV 572 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~-------~~a~~~~~~m~ 572 (805)
+.|.++.+.. +-...+|..+..+| ...|+. ++|..+|.++.
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 8888887742 22344444444443 345555 66666666543
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.55 E-value=1.6 Score=43.72 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=57.8
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHH----HHHHHhcCCH
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSM----VSLLGRAGHL 597 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----i~~~~~~g~~ 597 (805)
..|+..+|-..++++++. .+.|...+.-.=.+|...|+.+.-+..++++..+ -.|+...|.-+ ...+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 456677777777777664 3445556666666777777777777666666533 23444333222 2223345555
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 039715 598 DKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSA 636 (805)
Q Consensus 598 ~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 636 (805)
++|++.-++. .++| |...-.+........|+..++.+..
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 5555554433 2222 2223333444444445555555443
No 274
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.23 E-value=0.32 Score=44.72 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=50.2
Q ss_pred HHhcCCHHHHHHHHHcC----CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCh
Q 039715 591 LGRAGHLDKAAKLIEGI----PFQP---SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSW 663 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~----~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 663 (805)
+.+.|.+++|.+-|... |--+ -.+.|..-..+..+.+..+.|+....+++++.|.+..++..-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44455555555554432 1111 1234555555666777788888888888888887777777777788888888
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
++|..
T Consensus 185 eeale 189 (271)
T KOG4234|consen 185 EEALE 189 (271)
T ss_pred HHHHH
Confidence 88776
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.99 E-value=7.2 Score=35.20 Aligned_cols=103 Identities=21% Similarity=0.188 Sum_probs=61.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHcCCHH
Q 039715 553 SACSNGGLLEQGEAYFKSMVANYGIEPCI-EHYTSMVSLLGRAGHLDKAAKLIEGIP-FQPSVMIWRALLGACIIHNNVE 630 (805)
Q Consensus 553 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~ 630 (805)
+.-...++.+++..+++.+. -+.|.. ++-..-+..+.+.|++++|+.+|+++. -.|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33456677888888887776 456643 333444566777888888888888773 2344445566777666554444
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 039715 631 IGRLSAQHILDFEPEDEATHVLLSNIYAM 659 (805)
Q Consensus 631 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 659 (805)
.=....+++++..| ++.+-..+..+...
T Consensus 95 ~Wr~~A~evle~~~-d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 95 SWRRYADEVLESGA-DPDARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHHhcCC-ChHHHHHHHHHHHh
Confidence 44555666777666 34444444434333
No 276
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.80 E-value=13 Score=33.90 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=82.1
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHH-----HHHHHh
Q 039715 520 YSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSM-----VSLLGR 593 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~ 593 (805)
+++.++.++|+.-|..+.+.|...-++ .-........+.|+...|...|+++-.. .|.+....-+ ..++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 466788888999999888877654333 2223334467888999999999988744 3333222222 234667
Q ss_pred cCCHHHHHHHHHcCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 594 AGHLDKAAKLIEGIPFQPSV---MIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 594 ~g~~~eA~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
.|.+++....++.+....++ ..-.+|.-+-.+.|++..|...|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88999888888877433332 3467787788889999999999998876
No 277
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.36 E-value=0.23 Score=44.66 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=42.2
Q ss_pred HHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 039715 162 AFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFD 216 (805)
Q Consensus 162 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 216 (805)
.+++.+.+.+.+......++.+.+.+...+....+.|+..|++.++.+...+.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3566677778888888888888887767778899999999999987776666655
No 278
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=22 Score=35.54 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=62.7
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCC-HhHHH---HHHHHHHhCCChHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWN-EVSWN---AMISGYSMHGLSAEV 529 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~---~li~~~~~~g~~~~A 529 (805)
....|+...+...+....... +-+..+.-.|+..|...|+.+.|..++..++... ...|- +-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344556666666666555543 2234555667888888899999999998887431 11121 122333333333333
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 530 LKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 530 ~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
..+-.+.-. .| |...-..+...+...|+.++|.+.+=.+.+
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333332 45 333444455556667777777665555443
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.91 E-value=0.7 Score=29.20 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN 544 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 544 (805)
.+|..++..|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4677778888888888888888888877 4554
No 280
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.86 E-value=0.082 Score=47.66 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=87.6
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhH
Q 039715 61 TSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVE 140 (805)
Q Consensus 61 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 140 (805)
.+++.+.+.+.+......+..+.+.+...+....+.|+..|++.++.+...+.++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677777888999999999999887777889999999999999998999998885433 445667788888888888
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCC
Q 039715 141 AVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGC 207 (805)
Q Consensus 141 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 207 (805)
|.-++.++....- .+..+...++++.|.+.... ..+..+|..+++.+...++
T Consensus 89 a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 8888877654211 11112233444444422221 2456777777777765543
No 281
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.78 E-value=43 Score=38.46 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=15.3
Q ss_pred HHhcCCHHHHHHHHHcCCCCC
Q 039715 591 LGRAGHLDKAAKLIEGIPFQP 611 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~~~~p 611 (805)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457899999999999988777
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.72 E-value=9 Score=39.03 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=57.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHcCCCHHHHHHHHHHHH---HhcCCCCChHHHHH-
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRP-N----NLTFVGVLSACSNGGLLEQGEAYFKSMV---ANYGIEPCIEHYTS- 586 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~- 586 (805)
|..++...+.++++++.|+....---.. | -..+.++.+.+....++++|.-+..+.. ..+++..-..-|.+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444444555555555555554311111 1 1234555555555555555554443322 12222221122222
Q ss_pred ----HHHHHHhcCCHHHHHHHHHcCC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 587 ----MVSLLGRAGHLDKAAKLIEGIP----FQPS----VMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 587 ----li~~~~~~g~~~eA~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
|.-.|...|++-+|.+..++.. ...| ......+.+.|+..|+.|.|..-|+++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2234555566555555554330 1122 22345555666666666666666665554
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.66 E-value=20 Score=34.59 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKM 435 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m 435 (805)
|.--..+|-...++++|..-+.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA 57 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKA 57 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH
Confidence 444444555555666665555444
No 284
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.59 E-value=12 Score=35.30 Aligned_cols=170 Identities=13% Similarity=0.043 Sum_probs=99.7
Q ss_pred hcCCHHHHHHHhhhcC--CC-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHH
Q 039715 491 KCGSITDARLVFDMMN--DW-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEA 566 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 566 (805)
..|-..-|+--|.+.. .| -+..||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++...|++..|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHH
Confidence 3344555555554443 23 355778788788888999999999998888 4553 2343333335566788888887
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH-HHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 567 YFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKL-IEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 567 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
-|...-. -+|+...-.-.+.+-.+.-+..+|..- .++.. ..|..-|+.-+-.+..-.-.++ .+++++.+...+
T Consensus 155 d~~~fYQ---~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~~ 228 (297)
T COG4785 155 DLLAFYQ---DDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISEE--TLMERLKADATD 228 (297)
T ss_pred HHHHHHh---cCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccHH--HHHHHHHhhccc
Confidence 6655443 344332222222222344566777644 44443 4566667766666543222221 233344333333
Q ss_pred C-------cchHHHHHHHHHhcCChHHHhh
Q 039715 646 D-------EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 646 ~-------~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+ .++|.-|+.-|...|..++|..
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~ 258 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATA 258 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3 4678889999999999999976
No 285
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.41 E-value=1.1 Score=30.43 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL 546 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 546 (805)
.|..+...|...|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 456666777777777777777777776 355543
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.37 E-value=0.81 Score=29.53 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQ 537 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~ 537 (805)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777777777777777744
No 287
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.36 E-value=13 Score=32.07 Aligned_cols=52 Identities=12% Similarity=-0.007 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 616 WRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 616 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
.+.-+++...+|+-++-.+++..+.+-+..+|+..+-++++|.+.|...++.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ 140 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREAN 140 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHH
Confidence 3344455566666666666666666544445666666666666666666553
No 288
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.02 E-value=18 Score=41.54 Aligned_cols=214 Identities=13% Similarity=0.114 Sum_probs=86.5
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHhhCC---CCCcccHHHHHHHHHhCCC-------hhHHHHHHHHHHHCCCCCChh--
Q 039715 277 LYVAVALLDLYTKSGEISNARRIFEEMP---KKDVIPWSFMIARYAQTDL-------SIDAVELFCRMRQAFVAPNQF-- 344 (805)
Q Consensus 277 ~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-- 344 (805)
..+| ++|-.+.|+|++++|.++..+.. .+....+-..+..|+.+.+ -+....-|++..+.....|.+
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~ 190 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKR 190 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHH
Confidence 3445 46667778888888888883332 2233456666677766532 234555566665543322443
Q ss_pred HHHHHHHHHhccC-C-------chHHHHHHHHHHHhCCC-----ccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhh
Q 039715 345 TFVSVLQACATME-G-------LDLGNQIHSLVVRVGLL-----SDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVT 411 (805)
Q Consensus 345 t~~~ll~~~~~~~-~-------~~~a~~~~~~~~~~g~~-----~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~ 411 (805)
..-.++..|--.. . .|.-..+.=.+++.... .+..++..|=+...+-| ...|.. ..++..
T Consensus 191 AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~ 263 (613)
T PF04097_consen 191 AVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLL 263 (613)
T ss_dssp HHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT--------
T ss_pred HHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHH
Confidence 2223333332211 1 11222222222222211 11222222222211111 122222 122233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcC-CCCcHhHHHHHHHHHH
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKAN-YDMDVVVANALIDMYA 490 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~ 490 (805)
| ...+.-.|+++.|++.+-+ ..+...|.+.+...+..+.-+.-.+... ..+.... -.+...-+..||..|.
T Consensus 264 Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~ 335 (613)
T PF04097_consen 264 Y---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYT 335 (613)
T ss_dssp H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHH
T ss_pred H---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHH
Confidence 3 3445568999999998877 3334566666666665544333222211 2222111 0111244667788887
Q ss_pred h---cCCHHHHHHHhhhcC
Q 039715 491 K---CGSITDARLVFDMMN 506 (805)
Q Consensus 491 ~---~g~~~~A~~~~~~~~ 506 (805)
+ ..+..+|.+.|--+.
T Consensus 336 ~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 336 RSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HTTTTT-HHHHHHHHHGGG
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6 456777777776554
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.85 E-value=12 Score=34.17 Aligned_cols=135 Identities=9% Similarity=0.089 Sum_probs=89.0
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCC-CCcHhHHHHHHHHHHcC-CChHHHHHHHhhCC
Q 039715 227 LNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCY-EMDLYVAVALLDLYTKS-GEISNARRIFEEMP 304 (805)
Q Consensus 227 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~-g~~~~A~~~f~~~~ 304 (805)
++.++.+.+.++.|+...|..++..+.+.|.+..-.++ +..++ .++..+...|++.-.+. .-.+-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45566777889999999999999999999987655444 33444 44444554554432211 11344555555543
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 039715 305 KKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVG 373 (805)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 373 (805)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++...+.+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 35677888999999999999998875332 33344567777777777777777777666543
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.83 E-value=2.9 Score=41.76 Aligned_cols=76 Identities=11% Similarity=0.231 Sum_probs=59.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQ-----RGWRPNNLTFVG 550 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 550 (805)
..+++.++..+..+|+.+.+.+.+++.... |...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456778889999999999999999888743 677899999999999999999999988765 466666555444
Q ss_pred HHHH
Q 039715 551 VLSA 554 (805)
Q Consensus 551 ll~a 554 (805)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 291
>PRK10941 hypothetical protein; Provisional
Probab=88.79 E-value=0.84 Score=45.60 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEEeeCCCCCcc
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYFRAGDTSHAD 694 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~~ 694 (805)
..++|-.+|.+.++++.|+++.+.++.+.|+++.-+--.|-+|.+.|.+..|.. .+..|+.-....|.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~------------DL~~fl~~~P~dp~ 250 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALS------------DLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH------------HHHHHHHhCCCchh
Confidence 457777889999999999999999999999999888889999999999999987 11123333445576
Q ss_pred HHHHHHHHHHHHH
Q 039715 695 MNIIRGMLEWLNM 707 (805)
Q Consensus 695 ~~~i~~~l~~l~~ 707 (805)
...|...+..+..
T Consensus 251 a~~ik~ql~~l~~ 263 (269)
T PRK10941 251 SEMIRAQIHSIEQ 263 (269)
T ss_pred HHHHHHHHHHHhh
Confidence 7666666666543
No 292
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.79 E-value=15 Score=31.82 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=31.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVAN 574 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 574 (805)
-+..+...|+-++--+++.++.+. -+|++.....+..||.+.|+..++.+++.++-++
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344555666666666666665542 2556666666666666666666666666665544
No 293
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.15 E-value=1.4 Score=44.15 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=62.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc-
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRA- 594 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 594 (805)
..-|.++|++++|+..|.+... +.| |.+++..-..||.+...+..|..-...... + | ...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---L--d----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---L--D----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---h--h----HHHHHHHHHHH
Confidence 4579999999999999999888 678 999999999999999998888776665542 1 1 2334555554
Q ss_pred ------CCHHHHHHHHHcC-CCCCCH
Q 039715 595 ------GHLDKAAKLIEGI-PFQPSV 613 (805)
Q Consensus 595 ------g~~~eA~~~~~~~-~~~p~~ 613 (805)
|.++||.+=++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 5566665555533 456764
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.03 E-value=7.3 Score=35.34 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=64.4
Q ss_pred HhcCCHHHHHHHhhhcCCCCHhHHHHH-----HHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHH--HHHcCCCH
Q 039715 490 AKCGSITDARLVFDMMNDWNEVSWNAM-----ISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLS--ACSNGGLL 561 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~--a~~~~g~~ 561 (805)
++.+..++|+.-|..+.+.+--.|-.| .....+.|+...|+..|++.-...-.|-.. -...|-. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 345566666666666655433333332 344567777778888887776643334322 1112222 24566777
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 562 EQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 562 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
++...-.+.+... +-.-....-.+|.-.-.+.|++..|.++|..+
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 7766655544321 11112233445666666788888888888766
No 295
>PRK09687 putative lyase; Provisional
Probab=86.88 E-value=38 Score=34.38 Aligned_cols=74 Identities=12% Similarity=-0.027 Sum_probs=36.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS 556 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 556 (805)
+..+-..-+.++++.|+. .|...+-+..+.+. ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 205 ~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 444445555555565553 33333322222221 123455666666664 577777777653 345555444444443
No 296
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.63 E-value=1.5 Score=31.30 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 618 ALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 618 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
.+.-++.+.|++++|.+..+.+++++|+|..+-...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345578899999999999999999999997765544
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.60 E-value=26 Score=32.15 Aligned_cols=131 Identities=15% Similarity=0.059 Sum_probs=83.7
Q ss_pred HHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHH
Q 039715 181 ACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRV 260 (805)
Q Consensus 181 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 260 (805)
..+.+.+++++..++..+++.+.+.|++.. +..+...++-+|.......+-..... ...
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~-------------------L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~ 76 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQ-------------------LHQLLQYHVIPDSKPLACQLLSLGNQ--YPP 76 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-------------------HHHHHhhcccCCcHHHHHHHHHhHcc--ChH
Confidence 344456777888888888888888887654 33445566777776666555443332 223
Q ss_pred HHHHHHHHHHh-CCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 039715 261 AKSAHGCALKT-CYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQA 337 (805)
Q Consensus 261 a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (805)
+.++=-.|.+. +. .+..++..+...|++-+|.+..+....-+...-..++.+-.+.++...=..+|+-....
T Consensus 77 ~~Ql~lDMLkRL~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 77 AYQLGLDMLKRLGT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHHHHhhh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333333322 11 23456677888999999999998876666667777888888877776655555555443
No 298
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.13 E-value=9.6 Score=38.40 Aligned_cols=154 Identities=12% Similarity=0.090 Sum_probs=107.3
Q ss_pred hcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHcCCCHHH
Q 039715 491 KCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGV----LSACSNGGLLEQ 563 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~~ 563 (805)
-.|+.-+|...++++.+ .|..+|+--=.++..+|+.+.-...+++..-. ..||...|..+ .-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45788888888888874 48889999999999999999999999998864 45665433322 223467899999
Q ss_pred HHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCCCC--CCH-----HHHHHHHHHHHHcCCHHHHHHH
Q 039715 564 GEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQ--PSV-----MIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 564 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~--p~~-----~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
|.+.-++.. .+.| |.-...+....+.-.|+..|+.+++.+-.-. ... .-|..- -.+...+.++.|+++
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHH
Confidence 999877766 4555 3444556778888899999999999876411 110 112221 123445789999999
Q ss_pred HHHHh--ccCCCCcch
Q 039715 636 AQHIL--DFEPEDEAT 649 (805)
Q Consensus 636 ~~~~~--~~~p~~~~~ 649 (805)
|.+-+ +++.+|..+
T Consensus 270 yD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHHhhccchhh
Confidence 87543 466666643
No 299
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.12 E-value=36 Score=33.34 Aligned_cols=218 Identities=17% Similarity=0.246 Sum_probs=120.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh---cCCC--CChhhHHHHHHHHhccCCchhHHHHHHHHHH-----cCCCCcHhH
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLE---EQVP--ATEVTYSSVLRACASLAALEPGMQVHCLTVK-----ANYDMDVVV 481 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 481 (805)
.--||..+.+.|++++.++.+.+|.. ..+. -+..+.++++.-.+...+.+.-..+++.-++ .+-..--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 34466667777777777777776643 1111 2233556666655555555444444433221 111111223
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCC---------------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCH
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMNDW---------------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG-WRPNN 545 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~ 545 (805)
-+-|...|...|.+.+-.+++.++.+. -...|..-|..|..+.+-.+-..+|++.+... --|-+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 455667777777777777777666411 13356677888888888888888888876532 12333
Q ss_pred HHHHHHHHHHH-----cCCCHHHHHHHHHHHHHhcCCCCCh-----HHHHHHHHHHHhcCC----HHHHHHHHHcCCCC-
Q 039715 546 LTFVGVLSACS-----NGGLLEQGEAYFKSMVANYGIEPCI-----EHYTSMVSLLGRAGH----LDKAAKLIEGIPFQ- 610 (805)
Q Consensus 546 ~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~----~~eA~~~~~~~~~~- 610 (805)
....++.-|. +.|.+++|-.-|-+..+.|.-.-++ --|-.|..++.+.|- -+|| -|.+
T Consensus 228 -lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA------KPyKN 300 (440)
T KOG1464|consen 228 -LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA------KPYKN 300 (440)
T ss_pred -HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc------CCCCC
Confidence 3445555553 4677887776555555454332222 235566777777761 1222 1433
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 611 -PSVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 611 -p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
|.......|+.+|.. ++.. .|+++++
T Consensus 301 dPEIlAMTnlv~aYQ~-NdI~----eFE~Il~ 327 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQN-NDII----EFERILK 327 (440)
T ss_pred CHHHHHHHHHHHHHhc-ccHH----HHHHHHH
Confidence 445667888888754 4443 3444444
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.02 E-value=1.7 Score=27.24 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN 544 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 544 (805)
.|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 466677777777777777777777776 4453
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.91 E-value=19 Score=33.64 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCCC------CHhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMNDW------NEVSWNAMISGYSMHGLSAEVLKVFDLMQ 537 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 537 (805)
.+..+.+.|.+.|+.+.|.+.|.++.+. -+..+-.+|......|++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4555666666666666666666665533 12244445555555555555555555444
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.80 E-value=13 Score=37.91 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHHhc--cC----CccchhhHHHHHHHhCC---CCchhhHHHHHHHHHhcCCH
Q 039715 138 FVEAVGLFSTLHREGHELNPFAFTAFLKVLVS--MG----WAELCPCVFACVYKLGH---DSNAFVGTALIDAFSVCGCV 208 (805)
Q Consensus 138 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~y~~~g~~ 208 (805)
+.+.+.+++.|.+.|++-+.++|.+..-.... .. ....+..+|+.|.+... .++-.++..|+.+ ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788889999999888888775544443 22 34467788999988764 3444566666543 33333
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChh--hHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCCCcHhHHHH
Q 039715 209 EFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNF--TFAFVLKACLGLDT--IRVAKSAHGCALKTCYEMDLYVAVA 282 (805)
Q Consensus 209 ~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~ 282 (805)
+ .+.+ ++...|+.+...|+..+.. ..+.+|..+..... ...+.++++.+.+.|.+.....|..
T Consensus 156 e---~l~~--------~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 E---ELAE--------RMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred H---HHHH--------HHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 3 3333 5566777777777765543 34444444333322 2355666667777766655444443
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.64 E-value=1.7 Score=28.84 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777765
No 304
>PRK12798 chemotaxis protein; Reviewed
Probab=85.56 E-value=53 Score=34.77 Aligned_cols=205 Identities=14% Similarity=0.169 Sum_probs=129.1
Q ss_pred cCCHHHHHHHhhhcCC----CCHhHHHHHHHHH-HhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHH
Q 039715 492 CGSITDARLVFDMMND----WNEVSWNAMISGY-SMHGLSAEVLKVFDLMQQRGWRPNN----LTFVGVLSACSNGGLLE 562 (805)
Q Consensus 492 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 562 (805)
.|+-++|.+.+..+.. +.+..+-+|+.+- ....++.+|+++|++..- .-|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888999999888863 2455677776654 456789999999999876 45643 34444455678899999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHH-HHHHHHH---hcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039715 563 QGEAYFKSMVANYGIEPCIEHYT-SMVSLLG---RAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQH 638 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~---~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 638 (805)
++..+-.....+|.-.|=...|. -++..+. .....+.-..++..|+-..-..+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888888777776666443332 2233333 3334455556666775222245788888888899999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhc-----CChHHHhhcCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHHHHHHHHHc
Q 039715 639 ILDFEPEDEATHVLLSNIYAMA-----RSWEKAASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRKA 712 (805)
Q Consensus 639 ~~~~~p~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~ 712 (805)
++.+.++ ...-...+.+|... ...++|.+.... +..+..+|....+......+-..+.+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~-------------I~~~~L~~~Dr~Ll~AA~~va~~V~~~ 347 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQ-------------IDRDKLSERDRALLEAARSVARQVRRA 347 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhc-------------CChhhCChhhHHHHHHHHHHHHHHhcC
Confidence 9998743 33334445555433 345555551000 011244566555555555555555443
No 305
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.25 E-value=1.5 Score=26.43 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
.|..+...+...|+++.|...+++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5677778888889999999999999888875
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.07 E-value=9.2 Score=38.28 Aligned_cols=79 Identities=11% Similarity=0.219 Sum_probs=60.7
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hcCCCCChHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVA----NYGIEPCIEHY 584 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 584 (805)
..++..++..+...|+.+.+.+.++++... .| |...|..++.+|...|+...|+..|+.+.+ ..|+.|.....
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 346677888888889999999999999884 45 677888899999999999999888887764 44677776665
Q ss_pred HHHHHH
Q 039715 585 TSMVSL 590 (805)
Q Consensus 585 ~~li~~ 590 (805)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 544443
No 307
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.90 E-value=1.1 Score=28.52 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHhcCCHHHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA 600 (805)
...|..|..+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444444445455544444
No 308
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.13 E-value=23 Score=36.20 Aligned_cols=63 Identities=14% Similarity=0.315 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HH-HHHHHHHHcCCC--HHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 039715 527 AEVLKVFDLMQQRGWRPNNL-TF-VGVLSACSNGGL--LEQGEAYFKSMVANYGIEPCIEHYTSMVSL 590 (805)
Q Consensus 527 ~~A~~l~~~m~~~g~~p~~~-t~-~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 590 (805)
+++...|+.+.+.|+..+.. -+ ..++..+..... +..+.++++.+.+. ++++...+|..++-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 45667778888877766433 33 333333322222 44677788777766 888888887766543
No 309
>PRK09687 putative lyase; Provisional
Probab=83.85 E-value=53 Score=33.36 Aligned_cols=61 Identities=7% Similarity=-0.098 Sum_probs=27.5
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 579 PCIEHYTSMVSLLGRAGHLDKAAKLI-EGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 579 p~~~~~~~li~~~~~~g~~~eA~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
++..+-..-+.++++.|.. +|...+ +.+. .++ .....+.++...|+- +|+..+.++++-.|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 3444444555555555552 333322 2222 222 122344445555553 45555555555555
No 310
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.22 E-value=72 Score=34.47 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=33.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCC
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS--NGGLLEQGEAYFKSMVANYGIE 578 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~~ 578 (805)
+..-+-+.|-.++|...|..+... .+|+...|..++.--. .+-++.-++.+++.|...+|-+
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD 529 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC
Confidence 444445555566666666666653 1234444444443211 1112667778888888877733
No 311
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.12 E-value=46 Score=32.11 Aligned_cols=24 Identities=0% Similarity=-0.143 Sum_probs=17.5
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCc
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
...+++.+|+.+|+++-...-+++
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 456788899999988877555443
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.07 E-value=14 Score=33.48 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHH---hcCCHHHHHHHHHcCC-CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 580 CIEHYTSMVSLLG---RAGHLDKAAKLIEGIP-FQPSVMIWRA-LLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 580 ~~~~~~~li~~~~---~~g~~~eA~~~~~~~~-~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
+..+.+.|++.+. +.+..+++..++..+. +.|....... -.+.+...|++.+|+++++.+.+-.|..+..-..++
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 3445566665543 6789999999998772 4555433222 233466889999999999999998888887778888
Q ss_pred HHHHhcCC
Q 039715 655 NIYAMARS 662 (805)
Q Consensus 655 ~~~~~~g~ 662 (805)
..+...|+
T Consensus 86 ~CL~~~~D 93 (160)
T PF09613_consen 86 LCLYALGD 93 (160)
T ss_pred HHHHHcCC
Confidence 88877775
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.99 E-value=10 Score=35.43 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh------H
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL--TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI------E 582 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~ 582 (805)
..+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++..+..+..++........+. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 367778889999999999999999999876666544 56778888888899999998888776432211122 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCC
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGIP 608 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~~ 608 (805)
.|..|. +...|++.+|-+.|-...
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHccC
Confidence 233332 335789999988887663
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.88 E-value=6 Score=37.14 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=52.3
Q ss_pred HhcCCHHHHHHHHHcCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCChHH
Q 039715 592 GRAGHLDKAAKLIEGIPFQP--SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPE----DEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 665 (805)
.+.|+ ++|.+.|-++.-.| +....-.-+..|....|.++++.++.+++++.+. |+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 55666666553222 3333444455666688999999999999986443 57889999999999999998
Q ss_pred Hh
Q 039715 666 AA 667 (805)
Q Consensus 666 a~ 667 (805)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 73
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.63 E-value=16 Score=39.94 Aligned_cols=144 Identities=13% Similarity=-0.002 Sum_probs=95.0
Q ss_pred hcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHH
Q 039715 491 KCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT-FVGVLSACSNGGLLEQGEAYFK 569 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~ 569 (805)
-.|+++.|..++..+++. .-+.++.-+..+|..++|++ +.+|..- |-.. .+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~---------~s~D~d~rFela----l~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE---------LSTDPDQRFELA----LKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhh---------cCCChhhhhhhh----hhcCcHHHHHHHHH
Confidence 457888888877777632 34455666677787777776 3444432 3222 36788998888754
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 570 SMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 570 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
+. .+..-|..|.++....|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+....-+....|..
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A- 727 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA- 727 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH-
Confidence 43 255678899999999999999999987654 2667777777778776555555444444443322
Q ss_pred HHHHHHHHHhcCChHHHhh
Q 039715 650 HVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 650 ~~~l~~~~~~~g~~~~a~~ 668 (805)
-..|...|++++..+
T Consensus 728 ----F~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 728 ----FLAYFLSGDYEECLE 742 (794)
T ss_pred ----HHHHHHcCCHHHHHH
Confidence 235667777777776
No 316
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.54 E-value=2.1 Score=26.58 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 617 RALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 617 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
-.++.++...|+.++|...++++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 345667778899999999999999888863
No 317
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.39 E-value=71 Score=33.79 Aligned_cols=155 Identities=12% Similarity=0.117 Sum_probs=88.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHH---HhCCChHHHHHHHHHHHHcCCCCCHHHHHHH-
Q 039715 476 DMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGY---SMHGLSAEVLKVFDLMQQRGWRPNNLTFVGV- 551 (805)
Q Consensus 476 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l- 551 (805)
+-.+.+.-.+.+.+...|+.+.|.++.++..--=..+|......+ ...|... + .-...-|..-|.++
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~r--------L-~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCR--------L-DYRRPENRQFFLALF 107 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccc--------c-CCccccchHHHHHHH
Confidence 445666667777788888888888777664311000010000000 0000000 0 00001133334433
Q ss_pred --HHHHHcCCCHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHH-hcCCHHHHHHHHHcCCC--C-------CCHHHHH
Q 039715 552 --LSACSNGGLLEQGEAYFKSMVANYGIEPC--IEHYTSMVSLLG-RAGHLDKAAKLIEGIPF--Q-------PSVMIWR 617 (805)
Q Consensus 552 --l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~-~~g~~~eA~~~~~~~~~--~-------p~~~~~~ 617 (805)
+..+.+.|-+..|.++.+-+. .++|+ +...-.+||.|+ |+++++--+++++.... . || ..+.
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S 183 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFS 183 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHH
Confidence 456788999999999988777 56664 555556678776 78888888888876432 1 22 2233
Q ss_pred HHHHHHHHcCCH---------------HHHHHHHHHHhccCC
Q 039715 618 ALLGACIIHNNV---------------EIGRLSAQHILDFEP 644 (805)
Q Consensus 618 ~l~~~~~~~g~~---------------~~a~~~~~~~~~~~p 644 (805)
.-+. +...++. +.|...+++++..-|
T Consensus 184 ~aLA-~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 184 IALA-YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHH-HHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 3333 3334444 899999999999888
No 318
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=82.23 E-value=61 Score=32.90 Aligned_cols=140 Identities=14% Similarity=0.023 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHH-HHCCCCCCh-----hhHHHHHHHhhCCCCHH---HHHHHH
Q 039715 195 GTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQM-RAVGFKPNN-----FTFAFVLKACLGLDTIR---VAKSAH 265 (805)
Q Consensus 195 ~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m-~~~g~~p~~-----~t~~~ll~~~~~~~~~~---~a~~~~ 265 (805)
||.=.+.+.+..++++|...++ +|.++++.- ......|+. .++..+..++...+..+ .+..+.
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~--------~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l 110 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQ--------RAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNAL 110 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHH--------HHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3433444444347777777776 667776552 111223332 24555666666666544 344555
Q ss_pred HHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHh--CCChhHHHHHHHHHHHCCCC
Q 039715 266 GCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQ--TDLSIDAVELFCRMRQAFVA 340 (805)
Q Consensus 266 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~ 340 (805)
+.+.... +..+.++-.-+..+.+.++.+++.+.+.+|... ....+...+..+-+ ......|...+..+....+.
T Consensus 111 ~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~ 189 (278)
T PF08631_consen 111 RLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFK 189 (278)
T ss_pred HHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhC
Confidence 5554332 223344434455556677777777777777542 22335554444411 12334555555555544444
Q ss_pred CCh
Q 039715 341 PNQ 343 (805)
Q Consensus 341 p~~ 343 (805)
|..
T Consensus 190 ~~~ 192 (278)
T PF08631_consen 190 SSE 192 (278)
T ss_pred CCh
Confidence 443
No 319
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.72 E-value=6.6 Score=39.17 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=74.8
Q ss_pred HcCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCC-C------CcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 039715 84 KKGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPE-R------NTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELN 156 (805)
Q Consensus 84 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 156 (805)
..|...++.+-..++..-....+++++...+-+.+. | +... .+.++-+. .-++.+++.++..=...|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 345556666777777777777888998887766653 2 2222 22233332 3367899999999899999999
Q ss_pred cchHHHHHHHHhccCCccchhhHHHHHHHhC
Q 039715 157 PFAFTAFLKVLVSMGWAELCPCVFACVYKLG 187 (805)
Q Consensus 157 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 187 (805)
.+|+..+++.+.+.+++..|.++...|+...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999988887777654
No 320
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.48 E-value=12 Score=37.42 Aligned_cols=98 Identities=11% Similarity=0.178 Sum_probs=73.3
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039715 473 ANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP 543 (805)
Q Consensus 473 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 543 (805)
.|.+....+...++..-....+++++...+-++... ...+|-.++ -.=++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 345555566666777777778888888888776531 233333332 2336779999999889999999
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 039715 544 NNLTFVGVLSACSNGGLLEQGEAYFKSMVAN 574 (805)
Q Consensus 544 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 574 (805)
|..+++.+++.+.+.+++.+|.++...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999887777654
No 321
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.85 E-value=25 Score=28.71 Aligned_cols=87 Identities=11% Similarity=0.067 Sum_probs=57.0
Q ss_pred chHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 039715 359 LDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEE 438 (805)
Q Consensus 359 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 438 (805)
.++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34555555555443311 223333334556788999999999999999999999887654 567777777777777776
Q ss_pred CCCCChhhHHH
Q 039715 439 QVPATEVTYSS 449 (805)
Q Consensus 439 g~~p~~~t~~~ 449 (805)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 455445443
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.69 E-value=2.5 Score=26.50 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
+|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466667777777777777777777766
No 323
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.44 E-value=15 Score=41.11 Aligned_cols=182 Identities=16% Similarity=0.247 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCh----------hhHHHHHHHHhccCCchhHHHHHHHHHHc-C-CCCc
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE----------VTYSSVLRACASLAALEPGMQVHCLTVKA-N-YDMD 478 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~~~~ 478 (805)
+...|+-.|-...+++..+++.+.++.. ||. +.|...++---+-|+-++|....-.+++. | +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 4556777788888888888888888763 322 23444444444556667777665555443 3 233
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT---FVGVLSAC 555 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~ 555 (805)
++||-||++-+ .|- +-+.|...+..+.|++.|++.-+ +.|+..+ +..|+.+-
T Consensus 279 --------Dm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 36777776533 111 22344555667788888988887 6776543 44444332
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
.+ .++...++ +. .--.|-.+++|.|.++.-.++++- ...+.+-...+|+.+|+++
T Consensus 334 G~--~Fens~El-q~------------IgmkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLEL-QQ------------IGMKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHHH-HH------------HHHHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHH
Confidence 21 12222221 11 112345678899998877766532 2234445567899999999
Q ss_pred HHHHhccCCCC
Q 039715 636 AQHILDFEPED 646 (805)
Q Consensus 636 ~~~~~~~~p~~ 646 (805)
.++++++.|..
T Consensus 389 ae~mfKLk~P~ 399 (1226)
T KOG4279|consen 389 AEMMFKLKPPV 399 (1226)
T ss_pred HHHHhccCCce
Confidence 99999998854
No 324
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.15 E-value=1.2e+02 Score=34.95 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=82.3
Q ss_pred chHHHHHHHHH-hCCCchHHHHHhccCC----CCCcc-----hHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCCc
Q 039715 92 FATNVLLNVYV-KLNRLPDATKLFDEMP----ERNTI-----SFVTTIQGYTVSSQFVEAVGLFSTLHRE----GHELNP 157 (805)
Q Consensus 92 ~~~~~ll~~~~-~~g~~~~A~~~f~~~~----~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~ 157 (805)
.++-.+...|. ...+++.|+..+++.. +++.. .-..++..+.+.+... |...+++..+. +..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 45556666665 5667888888887642 12111 2234555666665555 88888876652 122223
Q ss_pred chHHHH-HHHHhccCCccchhhHHHHHHHhC---CCCchhhHHHHHHHHHh--cCCHHHHHHHHhhhccccHHHHHHHHH
Q 039715 158 FAFTAF-LKVLVSMGWAELCPCVFACVYKLG---HDSNAFVGTALIDAFSV--CGCVEFARKVFDGLFNDCFEEALNFFS 231 (805)
Q Consensus 158 ~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~~~~g~~~~A~~~~~ 231 (805)
..|..+ +..+...++...|.+.++.+...- ..+-+.+.-.++.+... .+..+++.+..+ ++.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~--------~~~~~~~ 210 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQ--------RAIAQAR 210 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHH--------HHHHHHh
Confidence 344443 333333367777777777666543 23334444444433332 233333333332 1111111
Q ss_pred HH--HHCCCCCChhhHHHHHHHhh--CCCCHHHHHHHHHHHH
Q 039715 232 QM--RAVGFKPNNFTFAFVLKACL--GLDTIRVAKSAHGCAL 269 (805)
Q Consensus 232 ~m--~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~ 269 (805)
.. ....-.|-...|..++..|+ ..|+++.+.+.+..+.
T Consensus 211 ~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 211 SLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 00011233445666666655 5566666665555443
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.70 E-value=4.3 Score=26.78 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666554
No 326
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.64 E-value=1.3e+02 Score=34.88 Aligned_cols=343 Identities=9% Similarity=-0.047 Sum_probs=154.4
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc
Q 039715 277 LYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATM 356 (805)
Q Consensus 277 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 356 (805)
...-...+..+.+.++.+...+.+.. +..+...-.....+....|+.++|....+.+-..|-. .......++..+.+.
T Consensus 99 ~~Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 99 RSLQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHc
Confidence 33444555666778888888874333 2334445566777888889888887777777555422 344556666666655
Q ss_pred CCchHHH--HHHHHHHHhCC-----------Ccc-HHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHH--
Q 039715 357 EGLDLGN--QIHSLVVRVGL-----------LSD-VFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYV-- 420 (805)
Q Consensus 357 ~~~~~a~--~~~~~~~~~g~-----------~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-- 420 (805)
|.+.... +=+..+...|- .++ ......++..+. +...+...+...+ ++...-...+-++.
T Consensus 177 g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASV 252 (644)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHH
Confidence 5433221 11111221110 111 111112222221 1222222222221 11111111111111
Q ss_pred HcCChHHHHHHHHHHhhcC-CCCChh--hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 039715 421 QLGEVGKAMIMFSKMLEEQ-VPATEV--TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITD 497 (805)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 497 (805)
...+.+.|..++....... ..+... ....+.......+..+++...+....... .+......-+..-.+.++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 2344567777777664332 222221 12222222222211344444444333222 133333444444456777777
Q ss_pred HHHHhhhcCCC--C-HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Q 039715 498 ARLVFDMMNDW--N-EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQG-EAYFKSMVA 573 (805)
Q Consensus 498 A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a-~~~~~~m~~ 573 (805)
+...|..|... + ..-.-=+..++...|+.++|...|+++... .+|-+++.+ .+.|..-.- ......-..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~Lg~~~~~~~~~~~~~~~ 403 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRLGEEYPLKIDKAPKPDS 403 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHcCCCCCCCCCCCCchhh
Confidence 77777777531 1 111222455555677777777777776331 134444432 122211000 000000000
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039715 574 NYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQH 638 (805)
Q Consensus 574 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 638 (805)
...-.| --.-+..+...|...+|...+..+-...+......+.......|..+.++.+..+
T Consensus 404 ~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 404 ALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred hhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 000001 0112345666778888777766542234444555555556677777777766654
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.60 E-value=1.2e+02 Score=34.49 Aligned_cols=59 Identities=12% Similarity=-0.044 Sum_probs=28.3
Q ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 596 HLDKAAKLIEGIPFQPSVMIWRALLGACIIH----NNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 596 ~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
+.+.+..++.+....-+......|...|..- .+.+.|...+.++-+.. +.....|+.++
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~ 516 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMH 516 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHH
Confidence 4455555555554344444444444443221 24566666665555444 44444454443
No 328
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.52 E-value=1.3e+02 Score=34.85 Aligned_cols=260 Identities=7% Similarity=0.036 Sum_probs=128.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchh
Q 039715 383 ALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEP 462 (805)
Q Consensus 383 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 462 (805)
.-+..+.+.++++....++.. +..+...-.....+....|+.++|....+++-..| .........++..+.+.|.+..
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~ 181 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDP 181 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCH
Confidence 334445556666666663322 22344444556666677777777776666665554 2234455566666655554433
Q ss_pred HHHH--HHHHHHcC-----------CCCc-HhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHH--hCCCh
Q 039715 463 GMQV--HCLTVKAN-----------YDMD-VVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYS--MHGLS 526 (805)
Q Consensus 463 a~~~--~~~~~~~~-----------~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~g~~ 526 (805)
.... +..+...| ++++ ......++..+.+ ...+...+.... ++...-...+.++. ...+.
T Consensus 182 ~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~ 257 (644)
T PRK11619 182 LAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASVARQDA 257 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCH
Confidence 2211 11111111 0111 1122333333322 222222222221 11111111122222 23456
Q ss_pred HHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039715 527 AEVLKVFDLMQQRG-WRPNNL--TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKL 603 (805)
Q Consensus 527 ~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 603 (805)
+.|..++.+..... +.+... ....+.......+...++...++..... ..+.....--+..-.+.++++.+...
T Consensus 258 ~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 258 ENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 88888888875433 333322 2233322233332256677776654322 22444455555565689999999999
Q ss_pred HHcCCCC-CCHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 604 IEGIPFQ-PSVMIWRA-LLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 604 ~~~~~~~-p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
|..||.. .+..-|.- ++.++...|+.++|...|+++.. + ...|-.|+.
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LAa 384 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVAA 384 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHHH
Confidence 9998621 11122222 33455668999999999999844 2 246656553
No 329
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.29 E-value=33 Score=28.06 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=45.6
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 039715 486 IDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVG 550 (805)
Q Consensus 486 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 550 (805)
+..+...|++++|..+.+.+..||+..|-++-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 344567799999999999888889999987754 35677777777777777776 565555543
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.86 E-value=90 Score=32.77 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQP------SVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
..++..++.+..++|+++.|...+.++.... .+.+.-.-.......|+.++|+..++..++
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455556666666666666666665552100 222233333445556666666666665555
No 331
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=77.26 E-value=1.2e+02 Score=33.54 Aligned_cols=122 Identities=15% Similarity=0.044 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 039715 377 DVFVSNALMDVYAKCGRMENSVELFAESPKRN---HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRA 453 (805)
Q Consensus 377 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 453 (805)
+..+|..-++.-.+.|+.+.+.-+|++..-+- ...|--.+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45567777777777777777777777654431 123544444444456666666665555443222222221111122
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDAR 499 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 499 (805)
+...|+...|..+++.+...- +.-+.+-..-+.+..+.|..+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 344567777777777666543 323333334455555666666665
No 332
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.25 E-value=2.5e+02 Score=36.98 Aligned_cols=299 Identities=10% Similarity=-0.000 Sum_probs=157.0
Q ss_pred HHHhccCCchHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhcCChHHHHHHHhc-CCCCChhhHHHHHHHHHHcCChHH
Q 039715 351 QACATMEGLDLGNQIHSLVVRVGL--LSDVFVSNALMDVYAKCGRMENSVELFAE-SPKRNHVTWNTMIVGYVQLGEVGK 427 (805)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~ 427 (805)
.+-.+.+.+..|...++.-..... ......+..+...|+.-+++|....+... ...++ ...-|.-....|++..
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWAD 1467 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHH
Confidence 344455666666666655210000 11223444555578888888877766652 33333 2334555667889999
Q ss_pred HHHHHHHHhhcCCCCC-hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHH-HHHHHHHHhcCCHHHHHHHhhhc
Q 039715 428 AMIMFSKMLEEQVPAT-EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVA-NALIDMYAKCGSITDARLVFDMM 505 (805)
Q Consensus 428 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~ 505 (805)
|..-|+.+.+. .|+ ..+++.++......+.++...-..+-..... .+....+ +.=+.+--+.++++.......
T Consensus 1468 a~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1468 AAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 99999999875 344 5678877777777777766665443333222 2222222 222334456666666665554
Q ss_pred CCCCHhHHHHH--HHHHHhCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH----------H
Q 039715 506 NDWNEVSWNAM--ISGYSMHGLSA--EVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKS----------M 571 (805)
Q Consensus 506 ~~~~~~~~~~l--i~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~----------m 571 (805)
.++..+|.+. +..+.+..+-+ .-.++.+.+.+.-+.| +.+|+..|.+..+.++.-+ .
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666665 22222222211 1123333333321221 2233333322222211111 1
Q ss_pred HHhcCCCCChHH-HH--HHHHHHHhcCCHHHHHHHH---HcC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHH
Q 039715 572 VANYGIEPCIEH-YT--SMVSLLGRAGHLDKAAKLI---EGI----PFQPS-----VMIWRALLGACIIHNNVEIGRLSA 636 (805)
Q Consensus 572 ~~~~~~~p~~~~-~~--~li~~~~~~g~~~eA~~~~---~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~ 636 (805)
....+..++... .+ ....-+.+.+....+.+-+ ++. ...|+ ..+|-.....++..|.++.|..+.
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 111133332211 11 1111222222222232222 111 11222 357999999999999999999988
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 637 QHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 637 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
-++.+.. -+..+.-.+..++..|+-..|..
T Consensus 1694 l~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1694 LNAKESR--LPEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred Hhhhhcc--cchHHHHHHHHHHhhccHHHHHH
Confidence 8888776 46788899999999999999887
No 333
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.98 E-value=25 Score=34.32 Aligned_cols=178 Identities=11% Similarity=0.060 Sum_probs=109.9
Q ss_pred hcCCHHHHHHHhhhcCCC-------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC--CCHHHHHHHHHHHHcC
Q 039715 491 KCGSITDARLVFDMMNDW-------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR---GWR--PNNLTFVGVLSACSNG 558 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~--p~~~t~~~ll~a~~~~ 558 (805)
+..++++|+.-|++..+. .--+.-.||..+.+.|++++.++.|.+|+.- .+. -+..+.++++...+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345677788877776522 2334556788888889999888888887641 111 2344677777777766
Q ss_pred CCHHHHHHHHHHHHHhcCC----CCChHHHHHHHHHHHhcCCHHHHHHHHHcCC-------CCCC-------HHHHHHHH
Q 039715 559 GLLEQGEAYFKSMVANYGI----EPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP-------FQPS-------VMIWRALL 620 (805)
Q Consensus 559 g~~~~a~~~~~~m~~~~~~----~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-------~~p~-------~~~~~~l~ 620 (805)
.+.+.-..+++.-.+...- ..-..+-.-|..+|...|.+..-.++++++. -+.| ..+|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666666665544432211 1122344567777777777777777766541 0111 23455556
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchH--H----HHHHHHHhcCChHHHhh
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEATH--V----LLSNIYAMARSWEKAAS 668 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~----~l~~~~~~~g~~~~a~~ 668 (805)
..|..+.+-..-..++++++.+..--|... - +=|.+..+.|+|++|.-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 677777887777888998887654333222 1 22556778889998866
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.55 E-value=1.6e+02 Score=33.88 Aligned_cols=23 Identities=9% Similarity=0.249 Sum_probs=17.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q 039715 313 FMIARYAQTDLSIDAVELFCRMR 335 (805)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~ 335 (805)
.|..-|...+++..|+.++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 37777888888888887776654
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.92 E-value=5.3 Score=36.63 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 629 VEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
+++|+.-+++++.++|+...++.++|++|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5677888889999999999999999999999886
No 336
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.66 E-value=35 Score=30.42 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=53.4
Q ss_pred HHHHHHHHHH---HHcCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHcCCCCC-CHHHHHHH
Q 039715 545 NLTFVGVLSA---CSNGGLLEQGEAYFKSMVANYGIEPCI-EHYTSMVSLLGRAGHLDKAAKLIEGIPFQP-SVMIWRAL 619 (805)
Q Consensus 545 ~~t~~~ll~a---~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~~p-~~~~~~~l 619 (805)
....+.++.. -...++.+++..+++.|. -+.|+. +.-..-+..+.+.|+++||..+|++..-.+ ....-.+|
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL 83 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence 3344444443 345778888888888877 456643 333344556777888888888888875333 33334455
Q ss_pred HHHHHH-cCCHHHHHHHHHHHhccC
Q 039715 620 LGACII-HNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 620 ~~~~~~-~g~~~~a~~~~~~~~~~~ 643 (805)
+..|.. .||.+ =.....++++-.
T Consensus 84 ~A~CL~al~Dp~-Wr~~A~~~le~~ 107 (153)
T TIGR02561 84 LALCLNAKGDAE-WHVHADEVLARD 107 (153)
T ss_pred HHHHHHhcCChH-HHHHHHHHHHhC
Confidence 555544 34432 223344444443
No 337
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.31 E-value=1.7e+02 Score=33.69 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=42.1
Q ss_pred CCChHHHHHHHhhCCC-----CC--cccHHHHHHHH--HhCCChhHHHHHHHHHHHCCC---------CCChhHHHHHHH
Q 039715 290 SGEISNARRIFEEMPK-----KD--VIPWSFMIARY--AQTDLSIDAVELFCRMRQAFV---------APNQFTFVSVLQ 351 (805)
Q Consensus 290 ~g~~~~A~~~f~~~~~-----~~--~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~ll~ 351 (805)
.++...|.+.++.+.. .+ +...-.++.+. .+.+.++++++.++++..... .|-..++..++.
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 3677777777766532 11 11222333332 334556777777776633221 234455666666
Q ss_pred HHh--ccCCchHHHHHHHHHH
Q 039715 352 ACA--TMEGLDLGNQIHSLVV 370 (805)
Q Consensus 352 ~~~--~~~~~~~a~~~~~~~~ 370 (805)
.++ ..|+++.+.+.++.+.
T Consensus 232 l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 553 4566556665555544
No 338
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.24 E-value=6 Score=23.21 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 039715 585 TSMVSLLGRAGHLDKAAKLIE 605 (805)
Q Consensus 585 ~~li~~~~~~g~~~eA~~~~~ 605 (805)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666554
No 339
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.04 E-value=27 Score=28.42 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 526 SAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 526 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+-+ .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 345566667777777899999999999999999999999999998875533 24446666553
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.83 E-value=24 Score=33.28 Aligned_cols=74 Identities=11% Similarity=-0.032 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHhcCCHHHHH
Q 039715 527 AEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI--EPCIEHYTSMVSLLGRAGHLDKAA 601 (805)
Q Consensus 527 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~eA~ 601 (805)
++|+..|-++...+.--+......+. .|....+.+++++++....+-+.- .+|++.+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44555555555544332322233333 333345566666666555543221 244555555666665555555553
No 341
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.91 E-value=29 Score=28.51 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 528 EVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 528 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455566666677889999999999999999999999999999887644 33336776654
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.69 E-value=4.6 Score=23.68 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=17.3
Q ss_pred chHHHHHHHHHhcCChHHHhh
Q 039715 648 ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 648 ~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.....|+.++...|++++|..
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 456788999999999999865
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.56 E-value=54 Score=29.27 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=62.4
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHhcCC
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRPNNL---TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMV-SLLGRAGH 596 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~~g~ 596 (805)
...++.+++..+++.|.- ++|+.. +|-..+ +...|++++|.++|+.+.+. .+....-..|. ..+.-.|
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~---~~~~p~~kAL~A~CL~al~- 92 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS---AGAPPYGKALLALCLNAKG- 92 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc---CCCchHHHHHHHHHHHhcC-
Confidence 348999999999999988 678654 444443 56789999999999998754 22221111221 1111112
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 597 LDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 597 ~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
...|..........|...+++.+.+.+..
T Consensus 93 ----------------Dp~Wr~~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 93 ----------------DAEWHVHADEVLARDADADAVALVRALLG 121 (153)
T ss_pred ----------------ChHHHHHHHHHHHhCCCHhHHHHHHHHhc
Confidence 23477777777777777777777766663
No 344
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.05 E-value=14 Score=34.05 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 629 VEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
+++|...|+++...+|++......|-
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 56788888888999998866555553
No 345
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.79 E-value=30 Score=32.35 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=21.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
-+|-+..++++|+.-|+++++++|..
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 35667788999999999999999954
No 346
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.16 E-value=37 Score=37.35 Aligned_cols=100 Identities=21% Similarity=0.178 Sum_probs=65.8
Q ss_pred HHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHH
Q 039715 287 YTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIH 366 (805)
Q Consensus 287 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 366 (805)
..+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|.+.+. |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34667888887776553 3456688888888888888888888877654 456666677777766555555
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhc
Q 039715 367 SLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAE 403 (805)
Q Consensus 367 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 403 (805)
....+.|. . |...-+|...|+++++.+++.+
T Consensus 716 ~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence 55555552 1 2233345566777777766654
No 347
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.76 E-value=61 Score=26.99 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=55.3
Q ss_pred CCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHh
Q 039715 357 EGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKML 436 (805)
Q Consensus 357 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 436 (805)
...++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345777777777777663 334444445566788999999966556667789999877755 47788888888888887
Q ss_pred hcCCCCChhhH
Q 039715 437 EEQVPATEVTY 447 (805)
Q Consensus 437 ~~g~~p~~~t~ 447 (805)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 655 3333333
No 348
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.16 E-value=98 Score=29.11 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=53.7
Q ss_pred HhccCCchHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhh--HHHHHHHHHHcCChHHH
Q 039715 353 CATMEGLDLGNQIHSLVVRVGLLSD--VFVSNALMDVYAKCGRMENSVELFAESPKRNHVT--WNTMIVGYVQLGEVGKA 428 (805)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A 428 (805)
+...++++.|...++..+...-..+ ..+--.|.......|.+|+|...++...+++-.+ -..-...+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 4555666666666665553211111 1222345666777888888888888877664332 22234577888888888
Q ss_pred HHHHHHHhhcC
Q 039715 429 MIMFSKMLEEQ 439 (805)
Q Consensus 429 ~~~~~~m~~~g 439 (805)
..-|.+.+..+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 88888887764
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.10 E-value=29 Score=36.81 Aligned_cols=120 Identities=13% Similarity=0.069 Sum_probs=74.9
Q ss_pred CCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039715 523 HGLSAEVL-KVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAA 601 (805)
Q Consensus 523 ~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 601 (805)
.|+...|- ++|.-+....-.|+.+...+.+ ..+.|.++.+.+.+...... +.....+..+++.-+.+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHH
Confidence 35544443 3444444433455555444443 56778888888877665532 3345567778888888888888888
Q ss_pred HHHHcCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 602 KLIEGIP--FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 602 ~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
.+-+.|- .-.+..+...-.......|-++++.-.+++++.++|..
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8877661 01123333333344566788888888888888888754
No 350
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=70.09 E-value=3.2 Score=43.98 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=50.8
Q ss_pred HhcCCHHHHHHHHHcC-CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 592 GRAGHLDKAAKLIEGI-PFQPSVMIWRAL-LGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+.+.++.|..++.++ .++||-+.+-+. ..++.+.+++..|+.-+.++++++|.....|+.-|.++.+.|++.+|..
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 3445555555555443 445654433222 2556677777778888888888888777777777777777787777766
No 351
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.43 E-value=2e+02 Score=34.11 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=24.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHh
Q 039715 124 SFVTTIQGYTVSSQFVEAVGLFSTLHR 150 (805)
Q Consensus 124 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 150 (805)
-|..|+--|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 388999999999999999999999876
No 352
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=67.11 E-value=13 Score=24.02 Aligned_cols=32 Identities=3% Similarity=-0.116 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHhccCCCC
Q 039715 615 IWRALLGACIIHNNVEIGRLS--AQHILDFEPED 646 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~--~~~~~~~~p~~ 646 (805)
-|-++...+..+|++++|+.. ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 466777788889999999999 54777777653
No 353
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=66.91 E-value=35 Score=27.79 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHH
Q 039715 326 DAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVV 370 (805)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 370 (805)
++.+-++.+....+.|+.....+.|+||.+.+|+..|..+++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455566666667788899999999999999999999999888776
No 354
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.73 E-value=48 Score=33.49 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=58.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHH
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPNNL---TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLL 591 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 591 (805)
+..+-.+.|+..+|.+.|+.+.+. .|-.. ....++.+|.....+.+...++-+.-+- ....+ ...|++ ++
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-slPkSA~icYTa---AL 354 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-SLPKSAAICYTA---AL 354 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cCcchHHHHHHH---HH
Confidence 444455678888888888877663 33211 2334666666655555555554333211 11111 122322 22
Q ss_pred HhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 039715 592 GRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
.+ +..+-++. .||..+-..|-.+ -.-|+++..++.+.+|.-|..+
T Consensus 355 LK------~RAVa~kF--spd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 355 LK------TRAVSEKF--SPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HH------HHHHHhhc--CchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHH
Confidence 22 22222222 4555544333222 1247788889999999766554
No 355
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.30 E-value=17 Score=39.68 Aligned_cols=101 Identities=15% Similarity=0.071 Sum_probs=75.5
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCCHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGIEPC--IEHYTSMVSLLGRAGHLDKAAKLIEGI-P-FQPSVMIWRALLGACIIHNNVE 630 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~ 630 (805)
..-.|+...|...+.... ...|. ....-.|..++.+.|...+|..++.+. . ....+.++-.++.++....+++
T Consensus 617 wr~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 345788888888877665 44552 233455677777888888888877643 2 1234567888999999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHH
Q 039715 631 IGRLSAQHILDFEPEDEATHVLLSNIYA 658 (805)
Q Consensus 631 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 658 (805)
.|++.++++++++|+++..-..|-.+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999988877766544
No 356
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.54 E-value=2e+02 Score=31.09 Aligned_cols=269 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCC------chHHHHHHHHHHHhCCCcc-------HHHHHHHHHH
Q 039715 321 TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEG------LDLGNQIHSLVVRVGLLSD-------VFVSNALMDV 387 (805)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~------~~~a~~~~~~~~~~g~~~~-------~~~~~~Li~~ 387 (805)
++.++..+++++.+...|.....+.++.....+.+.|. .++-.++-..+...|...+ ...+-...-.
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi 109 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVI 109 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhee
Q ss_pred HHhcCChHHHHHHHhcCCCC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHhhc---------------------
Q 039715 388 YAKCGRMENSVELFAESPKR--------NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEE--------------------- 438 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------- 438 (805)
|........|.++-.....+ -..........+....+.++|+.++.-+.+.
T Consensus 110 ~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt 189 (696)
T KOG2471|consen 110 FYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKT 189 (696)
T ss_pred eeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhccc
Q ss_pred -----------CCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC
Q 039715 439 -----------QVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND 507 (805)
Q Consensus 439 -----------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 507 (805)
--.|....-..-..++....++..+..-...+.... ..+....-.--..+.-.|++.+|.+++...--
T Consensus 190 ~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni 268 (696)
T KOG2471|consen 190 LSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNI 268 (696)
T ss_pred CCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhccc
Q ss_pred C------------CHhHHHHHHHHHHhCCChHHHHHHHHHHHH-------cCCCCC-----------HHHHHHHHHHHHc
Q 039715 508 W------------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQ-------RGWRPN-----------NLTFVGVLSACSN 557 (805)
Q Consensus 508 ~------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~p~-----------~~t~~~ll~a~~~ 557 (805)
. .-+.||.|...+.+.|.+.-+..+|.+.++ .|++|. ..+|+.-+ .+.+
T Consensus 269 ~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~-~~Lh 347 (696)
T KOG2471|consen 269 HKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL-LYLH 347 (696)
T ss_pred ccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH-HHHh
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACII 625 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~ 625 (805)
.|+.-.|.+.|......| +.++..|-.|..+|..
T Consensus 348 ~grPl~AfqCf~~av~vf----------------------------------h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 348 SGRPLLAFQCFQKAVHVF----------------------------------HRNPRLWLRLAECCIM 381 (696)
T ss_pred cCCcHHHHHHHHHHHHHH----------------------------------hcCcHHHHHHHHHHHH
No 357
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.24 E-value=1.1e+02 Score=32.71 Aligned_cols=120 Identities=8% Similarity=-0.012 Sum_probs=62.9
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHhcC
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRPNNL--TFVGVLSACS--NGGLLEQGEAYFKSMVANYGI-EPCIEHYTSMVSLLGRAG 595 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g 595 (805)
...+++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++........ .-....+..++...-...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 220 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALE 220 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHH
Confidence 3668888888888888876 555544 3344444443 456777888888876643111 011233333333333222
Q ss_pred CHHHHHHHHHcCCCCCC-HHHHHHHHHHHH--HcCCHHHHHHHHHHHhc
Q 039715 596 HLDKAAKLIEGIPFQPS-VMIWRALLGACI--IHNNVEIGRLSAQHILD 641 (805)
Q Consensus 596 ~~~eA~~~~~~~~~~p~-~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 641 (805)
.+....+....-+.++. ..+..-+.++-+ ..|+++.|..-+-+++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 221 SILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred hhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22222222221111111 234455555554 37889988876666665
No 358
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.94 E-value=97 Score=27.65 Aligned_cols=50 Identities=12% Similarity=0.257 Sum_probs=34.0
Q ss_pred CHhHHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 039715 509 NEVSWNAMISGYSMHGL-SAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNG 558 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 558 (805)
+-.+|.+++.+..+..- ---+..+|+-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 55567777777755544 334566777777777777777777787777653
No 359
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.86 E-value=86 Score=26.16 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=46.4
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34556666655555542 223333333445667788888855545555678888776643 466777777777777766
Q ss_pred cCCCCCHHHH
Q 039715 539 RGWRPNNLTF 548 (805)
Q Consensus 539 ~g~~p~~~t~ 548 (805)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 4443344
No 360
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=63.07 E-value=3.5e+02 Score=32.94 Aligned_cols=154 Identities=14% Similarity=0.055 Sum_probs=68.7
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAE-VLKVFDLMQQRGWRPNNLTFVGVLSAC 555 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~a~ 555 (805)
+|..+-...+..+.+.+..+. +......++...-...+.++...+..+. +...+.++.. .+|...-...+.++
T Consensus 726 ~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aL 799 (897)
T PRK13800 726 PDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAAL 799 (897)
T ss_pred CCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 344444444555544443321 2222334444444455555555544332 3344444443 34555555555566
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
...|..+.+...+..+.+ +++..+-..-+.++++.|.- +|...+..+-..|+..+-..-+.++...+....+...
T Consensus 800 g~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~ 874 (897)
T PRK13800 800 AELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAAD-VAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDA 874 (897)
T ss_pred HhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhcccc-chHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHH
Confidence 665554433333333332 24444444455556555542 3333333332245555554555555443223344444
Q ss_pred HHHHhc
Q 039715 636 AQHILD 641 (805)
Q Consensus 636 ~~~~~~ 641 (805)
+.++++
T Consensus 875 L~~al~ 880 (897)
T PRK13800 875 LTTALT 880 (897)
T ss_pred HHHHHh
Confidence 544444
No 361
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.84 E-value=1.5e+02 Score=28.73 Aligned_cols=99 Identities=12% Similarity=0.221 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHhcCCC-CChHHHHHHHH---HHHhcCCHHHHHHHHHcCC---CCCCHHHHHH---HHH--HHHHc
Q 039715 559 GLLEQGEAYFKSMVANYGIE-PCIEHYTSMVS---LLGRAGHLDKAAKLIEGIP---FQPSVMIWRA---LLG--ACIIH 626 (805)
Q Consensus 559 g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~---~~~~~g~~~eA~~~~~~~~---~~p~~~~~~~---l~~--~~~~~ 626 (805)
.++++|+..|+..-+-|..+ .+...-.|++. .-+..|++.+|+++|++.. +..+..-|.. ++. .|...
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 34555555555544333222 22223334432 3345678888888888662 2233333322 222 24444
Q ss_pred -CCHHHHHHHHHHHhccCCCCcc--hHHHHHHHH
Q 039715 627 -NNVEIGRLSAQHILDFEPEDEA--THVLLSNIY 657 (805)
Q Consensus 627 -g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~ 657 (805)
.|.--+..++++-.+++|.-.. -+-.|.++.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 7777888889999999995433 334444443
No 362
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=62.39 E-value=61 Score=28.89 Aligned_cols=79 Identities=16% Similarity=0.298 Sum_probs=60.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHhccCCC---------CCcchHHHHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCcchHH
Q 039715 92 FATNVLLNVYVKLNRLPDATKLFDEMPE---------RNTISFVTTIQGYTVSSQ-FVEAVGLFSTLHREGHELNPFAFT 161 (805)
Q Consensus 92 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~ 161 (805)
...|.+++-.+..+++.....+++.+.. .+..+|++++.+.++..- --.+..+|..|.+.+.++++.-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3467777777777777777777766642 456689999999977665 456788899999888899999999
Q ss_pred HHHHHHhcc
Q 039715 162 AFLKVLVSM 170 (805)
Q Consensus 162 ~ll~~~~~~ 170 (805)
.++++|.+-
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 999988764
No 363
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=62.35 E-value=85 Score=34.55 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCC--CHhHH---HHHHHHHHhCCChHHHHHHHHHHHHc
Q 039715 483 NALIDMYAKCGSITDARLVFDMMNDW--NEVSW---NAMISGYSMHGLSAEVLKVFDLMQQR 539 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~ 539 (805)
..|+.-|.+++++++|..++..|.-. ....| +.+.+.+.+..-..+....++.++..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 45777899999999999999988622 22222 33333444444344445555555543
No 364
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.22 E-value=2.2e+02 Score=30.22 Aligned_cols=106 Identities=16% Similarity=0.063 Sum_probs=66.8
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCC-----CC-------------ChhhHHHH---
Q 039715 190 SNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGF-----KP-------------NNFTFAFV--- 248 (805)
Q Consensus 190 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~-----~p-------------~~~t~~~l--- 248 (805)
-.+.+.-.+-..+...|+.+.|..+.+ .|+-.|+......+ .+ |..-|.++
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lle--------RALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLE--------RALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 345566667777888888888888877 56666665443333 11 22223333
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH-cCCChHHHHHHHhhC
Q 039715 249 LKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYT-KSGEISNARRIFEEM 303 (805)
Q Consensus 249 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-~~g~~~~A~~~f~~~ 303 (805)
+..+.+.|.+..|.++-+.+....+..|+.-...+|+.|+ ++++++--.++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 4556677777888887777777776667766666776665 556666555555543
No 365
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.72 E-value=2.4e+02 Score=30.52 Aligned_cols=196 Identities=9% Similarity=0.015 Sum_probs=92.2
Q ss_pred HHHHHCCCCCChhh--HHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHh--HHHHHHHHHHcCCChHHHHHHHhhCCCC
Q 039715 231 SQMRAVGFKPNNFT--FAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLY--VAVALLDLYTKSGEISNARRIFEEMPKK 306 (805)
Q Consensus 231 ~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~~ 306 (805)
+.+.+.|..|+... ..+.+..++..|+.+. .+.+++.|..++.. .....+...++.|+.+.+..+++.-...
T Consensus 19 ~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 19 RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc
Confidence 34445677666432 2334455556677654 44555566544422 1223455566788888888777654321
Q ss_pred C----cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH--HHHHHHHhccCCchHHHHHHHHHHHhCCCccHH-
Q 039715 307 D----VIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTF--VSVLQACATMEGLDLGNQIHSLVVRVGLLSDVF- 379 (805)
Q Consensus 307 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~- 379 (805)
+ ..-++. +...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+.. +.+++.|..++..
T Consensus 95 ~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v----~~Ll~~g~~~~~~d 165 (413)
T PHA02875 95 DDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI----ELLIDHKACLDIED 165 (413)
T ss_pred cccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhcCCCCCCCC
Confidence 1 111222 2333445554 345555566665543221 1233334455555443 3334444433211
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHhcCCCCChhh---HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC
Q 039715 380 -VSNALMDVYAKCGRMENSVELFAESPKRNHVT---WNTMIVGYVQLGEVGKAMIMFSKMLEEQVPAT 443 (805)
Q Consensus 380 -~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 443 (805)
...+.+...+..|+.+-+.-+++.-..++... ..+.+...+..|+.+ +.+-+.+.|..++
T Consensus 166 ~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 166 CCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 12233344455667666666666544433221 123333334455543 3333444555554
No 366
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.54 E-value=1.1e+02 Score=29.92 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=47.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAA 601 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~ 601 (805)
.++++++|++++-.- .+.|+.. .-++.++...|+.+.|..+++.+. ..-.+.+....+... ..+|.+.||.
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHH
Confidence 355566666655221 1222211 134555555677777777765543 111122333333333 4457777777
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHcC
Q 039715 602 KLIEGIPFQPSVMIWRALLGACIIHN 627 (805)
Q Consensus 602 ~~~~~~~~~p~~~~~~~l~~~~~~~g 627 (805)
.+.+..+.+-....|..++..|....
T Consensus 161 ~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 161 SFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 77766652111345666666655433
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=60.42 E-value=15 Score=21.63 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
.|..+...+...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455556666666666666666666554
No 368
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.87 E-value=11 Score=23.17 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=12.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
+..+|.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44455555566666666665555
No 369
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=59.82 E-value=15 Score=36.46 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=42.5
Q ss_pred HhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 592 GRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
.+.|+.++|..+|+.. .+.|+ +.+..-++...-.+++.-+|-..|-+++.+.|.+..++++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 4678888888888733 33443 3455555555566778888888888898888888777654
No 370
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.26 E-value=12 Score=30.22 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=18.1
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 634 LSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 634 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..+++.++.+|+|...-..++..|...|++++|.+
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~ 43 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALD 43 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34445555555555555555555555555555555
No 371
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=59.22 E-value=59 Score=26.86 Aligned_cols=47 Identities=21% Similarity=0.168 Sum_probs=29.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 606 GIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 606 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
.+...|++.+..+.+.||++.+++..|+++++-+-..-.+....|-.
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~ 84 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPY 84 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHH
Confidence 44567888888888888998899888888888775544433334433
No 372
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=58.83 E-value=2.6e+02 Score=29.98 Aligned_cols=71 Identities=10% Similarity=0.228 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhc
Q 039715 382 NALMDVYAKCGRMENSVELFAESPKR---NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACAS 456 (805)
Q Consensus 382 ~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 456 (805)
..|+.-|...|++.+|.....++.-| ..+.+-+++.+.-+.|+....+.++++....|. +|.+.+-.++.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 45788899999999999999987665 456789999999999998888888888877663 455555555544
No 373
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=58.50 E-value=76 Score=34.89 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=11.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHHH
Q 039715 127 TTIQGYTVSSQFVEAVGLFSTLH 149 (805)
Q Consensus 127 ~li~~~~~~g~~~~A~~~~~~m~ 149 (805)
.++.-|.+.++.++|+.++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 34445555555555555555543
No 374
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.20 E-value=2.8e+02 Score=30.30 Aligned_cols=162 Identities=11% Similarity=0.120 Sum_probs=81.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMN--DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC 555 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 555 (805)
|....-++++.++..-+..-.+.+-.+|. ..+-..+-.++..|.++ ..++-..+|+++.+. .-|.+.+..-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHH
Confidence 34444455555655555555555555554 23455566666666666 445566666666663 33444444444444
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHcCC----CCCCHHHHHHHHHHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEPC------IEHYTSMVSLLGRAGHLDKAAKLIEGIP----FQPSVMIWRALLGACII 625 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~~~~~~~l~~~~~~ 625 (805)
...++...+..+|.++... +.|. .+.|.-|+...+ .+.|.-..+..++. ...-.+.+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4446666666666666543 3331 134444443222 23333334433332 11122233333344555
Q ss_pred cCCHHHHHHHHHHHhccCCCC
Q 039715 626 HNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 626 ~g~~~~a~~~~~~~~~~~p~~ 646 (805)
..++.+|+++...+++.+-.|
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchh
Confidence 556666666666666665544
No 375
>PRK13342 recombination factor protein RarA; Reviewed
Probab=57.84 E-value=2e+02 Score=31.14 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=33.9
Q ss_pred hHHHHHHHHHH---cCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccC
Q 039715 411 TWNTMIVGYVQ---LGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLA 458 (805)
Q Consensus 411 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 458 (805)
.+..+++++.+ ..+.+.|+.++..|.+.|..|..+.-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34555555555 4789999999999999998887666555555554444
No 376
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.54 E-value=18 Score=21.96 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 627 NNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 627 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
|+.+.+..+++++++..|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56778888888888888877777766654
No 377
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.34 E-value=1.8e+02 Score=27.89 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=74.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHH
Q 039715 513 WNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSM 587 (805)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l 587 (805)
.+..++.+.+.+...+|+.+.++-.+. +|. ..+-..++..++-.|++++|..-++-.. .+.|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence 445567778888888999888877774 564 3455566777888899999988776655 34453 4556555
Q ss_pred HHHHHhcCCHHHHH-HHHHc--CC---CCCCHHHHHH-HHHHHHH--cCCHHHHHHHHHHHhccCCCCcc
Q 039715 588 VSLLGRAGHLDKAA-KLIEG--IP---FQPSVMIWRA-LLGACII--HNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 588 i~~~~~~g~~~eA~-~~~~~--~~---~~p~~~~~~~-l~~~~~~--~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
|.. +.+. ++|.. .| -.| ...|-. |+.+... -|..+.....-+++++..|..++
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p-~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGP-SPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCC-CHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 543 2222 34442 23 123 344544 4444333 34555566677888888776544
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.68 E-value=27 Score=27.18 Aligned_cols=47 Identities=4% Similarity=-0.024 Sum_probs=23.8
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 039715 557 NGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKL 603 (805)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~ 603 (805)
+....++|+..|....++..-.|+ ..+..+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665544222222 13455555555555555555544
No 379
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.58 E-value=44 Score=32.38 Aligned_cols=48 Identities=10% Similarity=-0.025 Sum_probs=40.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..+...|++-++++....++...|+|..+|..-+.+.+..=+.++|.+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~ 285 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKA 285 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence 345567899999999999999999999999999888777777777665
No 380
>PRK10941 hypothetical protein; Provisional
Probab=55.80 E-value=72 Score=32.07 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 585 TSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 585 ~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
+.+-..|.+.++++.|+...+.+ .+.|+ +.-|.--+-.|.+.|....|..-++.-++..|+++.+-..-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 34556667777777777777765 23443 45566666777788888888888888888888777665443
No 381
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=55.60 E-value=3.1e+02 Score=30.00 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=101.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 039715 410 VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMY 489 (805)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 489 (805)
...-+++..+.++-...-...+..+|..-| -+...|..++..|... ..+.-..+++++.+..+. |++...-|++.|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 345667788888888888888888888754 4566788888888777 566777788888877643 566667777777
Q ss_pred HhcCCHHHHHHHhhhcCCC------C---HhHHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCC
Q 039715 490 AKCGSITDARLVFDMMNDW------N---EVSWNAMISGYSMHGLSAEVLKVFDLMQQR-GWRPNNLTFVGVLSACSNGG 559 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~------~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g 559 (805)
-+ ++.+.+...|.++..+ + -..|.-++.- -..+.+.-+.+..+.+.. |..--.+.+--+-.-|+...
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 77 8888888888776532 1 1145554431 123445555555555432 22223344445555666777
Q ss_pred CHHHHHHHHHHHHH
Q 039715 560 LLEQGEAYFKSMVA 573 (805)
Q Consensus 560 ~~~~a~~~~~~m~~ 573 (805)
++++|++++..+.+
T Consensus 220 N~~eai~Ilk~il~ 233 (711)
T COG1747 220 NWTEAIRILKHILE 233 (711)
T ss_pred CHHHHHHHHHHHhh
Confidence 77777777776653
No 382
>PF15469 Sec5: Exocyst complex component Sec5
Probab=55.06 E-value=1.8e+02 Score=27.13 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=48.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 039715 550 GVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNN 628 (805)
Q Consensus 550 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 628 (805)
.-+.-|...|+++.+...|.++...++-.. ....+.. -+.+....++... ...|..|... ...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---------v~~eve~ii~~~r----~~l~~~L~~~---~~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---------VWSEVEKIIEEFR----EKLWEKLLSP---PSS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHHH----HHHHHHHhCC---CCC
Confidence 445567777888888888877765432221 2222211 1233333333221 1223333222 156
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHH
Q 039715 629 VEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
.++...+...+++++|++..++..|
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 7778888899999988665555544
No 383
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=54.80 E-value=18 Score=34.59 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=45.2
Q ss_pred HHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 590 LLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 590 ~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
++.+.|+.+.|.+++.+. ...| ....|-.+...--+.|+.+.|.+.+++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 455677888888888766 3344 45678888888888999999999999999999976
No 384
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=53.77 E-value=4.9e+02 Score=31.71 Aligned_cols=255 Identities=10% Similarity=-0.047 Sum_probs=144.7
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCc
Q 039715 297 RRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLS 376 (805)
Q Consensus 297 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 376 (805)
..+...+..++...-..-+..+.+.+. ++++..+..+++ .+|...-...+.++...+........+..+++ .+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 345555566777777777777777665 445555555553 23444444455555444321111223333333 25
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhc
Q 039715 377 DVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACAS 456 (805)
Q Consensus 377 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 456 (805)
|..+....++.+...+.-+ ...+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 6666667777766544221 2344556666776655566666666554332 22222 23455555556666666
Q ss_pred cCCchh-HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH-HHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHH
Q 039715 457 LAALEP-GMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDAR-LVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFD 534 (805)
Q Consensus 457 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 534 (805)
.+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. .++...+-
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 665433 2333434433 346778888888888888766553 34444455666666667777777765 56777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 535 LMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 535 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
.+++ .|+...=...+.++.....-..+...+..+.+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 7775 56766666667777775434566777766664
No 385
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=53.33 E-value=24 Score=23.99 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=14.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhc
Q 039715 415 MIVGYVQLGEVGKAMIMFSKMLEE 438 (805)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~ 438 (805)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666543
No 386
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.21 E-value=1.9e+02 Score=28.91 Aligned_cols=125 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHH-------HHHHHHhccCCchhHHHHHH----HHHHcCCCCcHhHHH
Q 039715 415 MIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYS-------SVLRACASLAALEPGMQVHC----LTVKANYDMDVVVAN 483 (805)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------~ll~a~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~ 483 (805)
+..-.++.+++++|+..+.+....|+..|..+.+ .+...|...|+...-.+... .|....-+..+.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcCC-HHHHHHHhhhcCCC---------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 039715 484 ALIDMYAKCGS-ITDARLVFDMMNDW---------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR 539 (805)
Q Consensus 484 ~li~~y~~~g~-~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 539 (805)
+|++.+....+ ++.-..+.....+. -...=.-+|..+.+.|++.+|+.+...+..+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
No 387
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=53.15 E-value=39 Score=33.76 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=40.4
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 623 CIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 623 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.++.|+.++|..+|+.++.+.|+++.++.-+|.......+.-+|..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq 171 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQ 171 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhh
Confidence 5678999999999999999999999999999888877777777655
No 388
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.14 E-value=4.5e+02 Score=31.05 Aligned_cols=347 Identities=12% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH----hccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 039715 316 ARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQAC----ATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKC 391 (805)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 391 (805)
..+...|.+++|++---... |......++.-+ ...+++.........+-..-+..++...-.-+-.....
T Consensus 355 ~w~~~~g~~~eAI~hAlaA~------d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~ 428 (894)
T COG2909 355 EWFAEHGLPSEAIDHALAAG------DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQ 428 (894)
T ss_pred HHHHhCCChHHHHHHHHhCC------CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHc
Q ss_pred CChHHHHHHHhcCCCCChh-----------hHHHH-HHHHHHcCChHHHHHHHHHHhh----cCCCCChhhHHHHHHHHh
Q 039715 392 GRMENSVELFAESPKRNHV-----------TWNTM-IVGYVQLGEVGKAMIMFSKMLE----EQVPATEVTYSSVLRACA 455 (805)
Q Consensus 392 g~~~~A~~~f~~~~~~~~~-----------~~~~l-i~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~~ll~a~~ 455 (805)
.++++|..+..+....=.. .|+++ .......|++++|+++-+.... .-..+..+.+..+..+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Q ss_pred ccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH-----HHhcC--CHHHHHHHhhhcCCC----------CHhHHHHHHH
Q 039715 456 SLAALEPGMQVHCLTVKANYDMDVVVANALIDM-----YAKCG--SITDARLVFDMMNDW----------NEVSWNAMIS 518 (805)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-----y~~~g--~~~~A~~~~~~~~~~----------~~~~~~~li~ 518 (805)
-.|++++|..+.+...+..-..+...+...... +...| ...+.+..|...... -...+..+..
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~ 588 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLR 588 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Q ss_pred HHHh-CCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH---
Q 039715 519 GYSM-HGLSAEVLKVFDLMQQRGWRPNNLTFV--GVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLG--- 592 (805)
Q Consensus 519 ~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~--- 592 (805)
++.+ .+...+|..-+.-.......|-..... .+.......|++++|...++++..-..-.--..-|.+++..-.
T Consensus 589 ~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~l 668 (894)
T COG2909 589 AWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLIL 668 (894)
T ss_pred HHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHH
Q ss_pred --hcCCHHHHHHHHHc------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCCcchHHHHHHHHHhcCCh
Q 039715 593 --RAGHLDKAAKLIEG------IPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILD-FEPEDEATHVLLSNIYAMARSW 663 (805)
Q Consensus 593 --~~g~~~eA~~~~~~------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~ 663 (805)
.+|+.++|.....+ +...--...|..+...-...|-..+++.+...+.+ .-++........+-++...+..
T Consensus 669 wl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~eae~al~~l~~r~~~~~~r~l~l~~~L~~~~~~k 748 (894)
T COG2909 669 WLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEAELALDELASRLTEDLNRNLRLLGLLYEGEAVK 748 (894)
T ss_pred hcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHHHHHHHHHhhhhhhhHhHHHHHHHHhhhhhhhh
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
..+..
T Consensus 749 ~~~~~ 753 (894)
T COG2909 749 GQLAL 753 (894)
T ss_pred hhhHH
No 389
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.96 E-value=23 Score=27.56 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=29.1
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHH---HHHHHhcCChHHHhh
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLL---SNIYAMARSWEKAAS 668 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l---~~~~~~~g~~~~a~~ 668 (805)
...+.++|+..++++++..++.+.-+..| ..+|...|++.++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777766655555444 446777777777655
No 390
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=52.80 E-value=80 Score=27.66 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 618 ALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 618 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
-|.-++.+.|+++++++..+.+++.+|+|..+..+
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34456778899999999999999999988765443
No 391
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.10 E-value=6.2 Score=39.97 Aligned_cols=75 Identities=13% Similarity=0.286 Sum_probs=43.6
Q ss_pred cCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 594 AGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 594 ~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.|.+++|++.|... +..|. ...+..-.+++.+.++...|++-+..+++++||....|-.-+......|.|++|.+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34455555555433 33333 23333344455566666666666666777777666666666666666677766665
No 392
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=51.66 E-value=27 Score=34.63 Aligned_cols=79 Identities=25% Similarity=0.235 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEEeeCCCCCccH
Q 039715 616 WRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYFRAGDTSHADM 695 (805)
Q Consensus 616 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~~~ 695 (805)
.+++=+++...++++.|....++++.++|+++.-..--|-+|.+.|-..-|.. .+..|+.-....|..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~------------dl~~~~~~~P~~~~a 251 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALE------------DLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHH------------HHHHHHHhCCCchHH
Confidence 34455668888999999999999999999999888888999999998888766 111233333445666
Q ss_pred HHHHHHHHHHH
Q 039715 696 NIIRGMLEWLN 706 (805)
Q Consensus 696 ~~i~~~l~~l~ 706 (805)
+.|...+.++.
T Consensus 252 ~~ir~~l~~l~ 262 (269)
T COG2912 252 EMIRAQLLELR 262 (269)
T ss_pred HHHHHHHHHHH
Confidence 66666666664
No 393
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.04 E-value=2.7e+02 Score=27.89 Aligned_cols=33 Identities=21% Similarity=0.071 Sum_probs=22.1
Q ss_pred CcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCC
Q 039715 275 MDLYVAVALLDLYTKSGEISNARRIFEEMPKKD 307 (805)
Q Consensus 275 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 307 (805)
-|+.....+...|.+.|++.+|+.-|-.-..++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~ 120 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPS 120 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChh
Confidence 466777788888888888888888776554333
No 394
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=50.54 E-value=60 Score=28.89 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 598 DKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 598 ~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
++|.++++-|. .....-.........|++..|.++.+.++..+|+|..+-...+++|.+.|.-.+
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 45666666664 222222333446678999999999999999999999999999999888775443
No 395
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=50.37 E-value=2.6e+02 Score=28.80 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=87.5
Q ss_pred CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHhcCCCCC
Q 039715 507 DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSN------GGLLEQGEAYFKSMVANYGIEPC 580 (805)
Q Consensus 507 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~m~~~~~~~p~ 580 (805)
+.|...|+-- ..++++.++++....+ .|........+.+|-- .-+|..-..+|+.+. .+.|+
T Consensus 261 dQDr~lW~r~--------lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apS 328 (415)
T COG4941 261 DQDRSLWDRA--------LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPS 328 (415)
T ss_pred ccchhhhhHH--------HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCC
Confidence 3466677653 3578889999988877 4888887777776632 236777777887776 35565
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQP----SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
+.+--+-.-++++.--.+.++..++.+.-.| -...|..=.+.+.+.|+.++|...|++++++.++..+.-
T Consensus 329 PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 329 PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 5332222233444444566666666553222 223456666778999999999999999999998766543
No 396
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.28 E-value=93 Score=26.19 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=24.6
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 039715 310 PWSFMIARYAQTDLSIDAVELFCRMRQ 336 (805)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (805)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 489999999999999999999999876
No 397
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.76 E-value=36 Score=23.17 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=14.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQR 539 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~ 539 (805)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666643
No 398
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=49.73 E-value=53 Score=23.44 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=22.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGV 551 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 551 (805)
+.-|+.+.|++++|.+..+.+++ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 45567777888888888888877 56765544443
No 399
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.72 E-value=2.8e+02 Score=27.75 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=44.6
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS 556 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 556 (805)
-++.....+...|.+.|++.+|+..|-.-..++...+..++.-....|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 36788888999999999999999888554433333222222221222221111 111122233 345
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 039715 557 NGGLLEQGEAYFKSMVAN 574 (805)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~ 574 (805)
..|++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567888888887777654
No 400
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.27 E-value=1.7e+02 Score=29.32 Aligned_cols=88 Identities=17% Similarity=0.113 Sum_probs=54.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh-
Q 039715 517 ISGYSMHGLSAEVLKVFDLMQQ--RGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGR- 593 (805)
Q Consensus 517 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 593 (805)
|.+++..+++.+++...-+--+ +.++|...-...+ .|++.|....+.++-..-... .-.-+..-|..++++|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 5677777888777664333222 1244544444433 477888888777776666543 112233457777777654
Q ss_pred ----cCCHHHHHHHHHcC
Q 039715 594 ----AGHLDKAAKLIEGI 607 (805)
Q Consensus 594 ----~g~~~eA~~~~~~~ 607 (805)
.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 69999999998544
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.93 E-value=59 Score=30.79 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 611 PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 611 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444445555555555555555554444
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.85 E-value=1.2e+02 Score=25.64 Aligned_cols=27 Identities=15% Similarity=0.421 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
-|..++.-|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888888888888899888888876
No 403
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=48.29 E-value=48 Score=31.58 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-cCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 585 TSMVSLLGRAGHLDKAAKLIE-GIPFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 585 ~~li~~~~~~g~~~eA~~~~~-~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
+.-+..+.+.+++++|+...+ ....+| |...-..|...+...|++++|..-++-+-++.|++..-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 344567778888999888765 344455 45567778888889999999998888888888876543
No 404
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.16 E-value=30 Score=33.37 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=37.9
Q ss_pred CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 609 FQPSVM-IWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 609 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+.|+.. .|..=+-.+.+..+++.+..-..+++++.|+..-.+..|+........+++|.+
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 455543 344444444556666777777777777777777777777777777777776665
No 405
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=46.88 E-value=5.5e+02 Score=30.26 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHh--------CCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCC--CC-----chhhH-HHHH---
Q 039715 139 VEAVGLFSTLHR--------EGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGH--DS-----NAFVG-TALI--- 199 (805)
Q Consensus 139 ~~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~-----~~~~~-~~li--- 199 (805)
++...++++... .++..+......+...+ .|+...+..+++.+..... .. +.... ..+-
T Consensus 171 edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 171 EDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 444555555443 23455555565555543 6777777777777654211 01 11111 1111
Q ss_pred HHHHhcC--CHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039715 200 DAFSVCG--CVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKA 251 (805)
Q Consensus 200 ~~y~~~g--~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 251 (805)
..|.+.| .++....+.+.|+.++++.|+.++.+|.+.|..|....-..++.+
T Consensus 249 ~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~a 302 (725)
T PRK13341 249 VLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAA 302 (725)
T ss_pred hhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2344444 356666677777788888888888888888777655444333333
No 406
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.69 E-value=1.9e+02 Score=28.21 Aligned_cols=81 Identities=7% Similarity=-0.180 Sum_probs=40.5
Q ss_pred HHhcCCHHHHHHHhhhcC--CCCH-hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCCHHHH
Q 039715 489 YAKCGSITDARLVFDMMN--DWNE-VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT-FVGVLSACSNGGLLEQG 564 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a 564 (805)
|....+++.|...+.+.. .|++ .-|+.=+..+.+..+++.+.+--.+.++ +.||.+- ...+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 444455556666555544 2333 3344455555556666665555555555 4555442 22333334445555555
Q ss_pred HHHHHHH
Q 039715 565 EAYFKSM 571 (805)
Q Consensus 565 ~~~~~~m 571 (805)
+..+++.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 5555444
No 407
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=44.93 E-value=67 Score=31.05 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCCHHH-------HHHHHHHHhccCC------CCcchHHHHHHHHHhcCChHHHhh
Q 039715 614 MIWRALLGACIIHNNVEI-------GRLSAQHILDFEP------EDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~-------a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.++--+.+.|+..|+.+. |...|+++++.+. +.......+|.++.+.|++++|.+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~ 186 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKR 186 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 467777788888888554 4444555554332 224566789999999999999988
No 408
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.70 E-value=4.7e+02 Score=28.91 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=55.1
Q ss_pred HHHHHHHHHH-hCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhh
Q 039715 140 EAVGLFSTLH-REGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGL 218 (805)
Q Consensus 140 ~A~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 218 (805)
+....+.+.. ..|+..+......++... .|+...+...++.+....- +..+...+-.+ ...-..+....+.+.+
T Consensus 180 el~~~L~~i~~~egi~i~~eal~~Ia~~s--~GdlR~aln~Le~l~~~~~--~~It~e~V~~~-l~~~~~~~i~~li~si 254 (472)
T PRK14962 180 LIIKRLQEVAEAEGIEIDREALSFIAKRA--SGGLRDALTMLEQVWKFSE--GKITLETVHEA-LGLIPIEVVRDYINAI 254 (472)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcC--CCCCHHHHHHH-HcCCCHHHHHHHHHHH
Confidence 3334444433 345555555555555432 3566666666666554321 11222222222 2223445666667777
Q ss_pred ccccHHHHHHHHHHHHHCCCCCChhh
Q 039715 219 FNDCFEEALNFFSQMRAVGFKPNNFT 244 (805)
Q Consensus 219 ~~g~~~~A~~~~~~m~~~g~~p~~~t 244 (805)
..++++.|+.++.+|...|..|....
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i~ 280 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVLI 280 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 88888888888888888887766553
No 409
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.28 E-value=73 Score=32.53 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-C---CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGI-P---FQPS--VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~-~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
.+|.-=+.-|.+..++..|...|.+- . -.|| .+.|++-..+-...|++..++.-..+++.++|.+.-+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34444456677888888888888643 1 1344 4667777777677899999999999999999999999999999
Q ss_pred HHHhcCChHHHhh
Q 039715 656 IYAMARSWEKAAS 668 (805)
Q Consensus 656 ~~~~~g~~~~a~~ 668 (805)
.+....++++|..
T Consensus 162 c~~eLe~~~~a~n 174 (390)
T KOG0551|consen 162 CLLELERFAEAVN 174 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888755
No 410
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.58 E-value=5.4e+02 Score=29.22 Aligned_cols=48 Identities=13% Similarity=-0.047 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHc-CCChHHHHHHHhhCCC
Q 039715 257 TIRVAKSAHGCALKTCYEMDLYVAVALLDLYTK-SGEISNARRIFEEMPK 305 (805)
Q Consensus 257 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~ 305 (805)
+...|..++....+.|.+ +....-..+..... ..+...|.+.|.....
T Consensus 308 d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred cHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 456677777777766632 33222222222222 2345566666665544
No 411
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.35 E-value=5.1e+02 Score=28.92 Aligned_cols=50 Identities=12% Similarity=0.182 Sum_probs=26.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHH-hcCCHHHHHHHHHc
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEP--CIEHYTSMVSLLG-RAGHLDKAAKLIEG 606 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~-~~g~~~eA~~~~~~ 606 (805)
...+.|-+..|.++.+.+. .++| |+.....+||.|+ |+.+++--+++++.
T Consensus 351 ~l~~RGC~rTA~E~cKlll---sLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLL---SLDPSEDPLGILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred HHHhcCChHHHHHHHHHHh---hcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455666666666655544 3444 3444444555554 55555555555543
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.62 E-value=83 Score=29.78 Aligned_cols=52 Identities=17% Similarity=0.048 Sum_probs=41.6
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
....+.+......+.+.+.....|++..|..++..+...|+.+||.++.+++
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566666666666665555567899999999999999999999999998877
No 413
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.39 E-value=3.3e+02 Score=26.60 Aligned_cols=115 Identities=8% Similarity=0.014 Sum_probs=60.5
Q ss_pred hcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 039715 491 KCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKS 570 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 570 (805)
..+++++|.+.+..-.-. ..-..-++.++...|+.+.|+.+++.+.-..- +......++.+ ...+.+.+|..+-+.
T Consensus 90 D~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred ChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 446777777776443211 11122367777778888888888877543211 22223333333 344788888876554
Q ss_pred HHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCH
Q 039715 571 MVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSV 613 (805)
Q Consensus 571 m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~ 613 (805)
..+. -....+..++........-....+.+-.+|+.+..
T Consensus 166 ~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 166 YPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEE 204 (226)
T ss_pred Cchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHH
Confidence 3321 11345666666555433223334444456655543
No 414
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.50 E-value=4.9e+02 Score=28.18 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHh---CCC-CCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHH----HHHhcC--CH
Q 039715 139 VEAVGLFSTLHR---EGH-ELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALID----AFSVCG--CV 208 (805)
Q Consensus 139 ~~A~~~~~~m~~---~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~----~y~~~g--~~ 208 (805)
++...++.+... .|+ ..+......++..+ .|+...+..+++.+...+...+......++. .|.+.| .+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~ 231 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEHY 231 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHHH
Confidence 455555555432 133 34444444444433 5677777766666554322222222222221 111211 12
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 039715 209 EFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVL 249 (805)
Q Consensus 209 ~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 249 (805)
+....+.+.++..+.+.|+.++.+|.+.|..|....-..+.
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22333333445567777777777777777666544433333
No 415
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.31 E-value=5.1e+02 Score=28.29 Aligned_cols=146 Identities=12% Similarity=0.137 Sum_probs=90.5
Q ss_pred hHHHHHHHhhCCCCCccc----------HHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCC--hh-----HHHHHHHH-H
Q 039715 293 ISNARRIFEEMPKKDVIP----------WSFMIARYAQTDLSIDAVELFCRMRQAF-VAPN--QF-----TFVSVLQA-C 353 (805)
Q Consensus 293 ~~~A~~~f~~~~~~~~~~----------~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~-----t~~~ll~~-~ 353 (805)
.|+|+...++.++.+..+ ...++..-.-.|++.+|++-...|.+.- -.|. .. -...++.. |
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 456666666666555221 2233344456799999999999997642 2233 11 11222222 4
Q ss_pred hccCCchHHHHHHHHHHHhCCCccH--HHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHH--------HHH--HHH
Q 039715 354 ATMEGLDLGNQIHSLVVRVGLLSDV--FVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTM--------IVG--YVQ 421 (805)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l--------i~~--~~~ 421 (805)
...+.++.|+.-+....+.--..|. ..-..+.-.|.+.|+.+.-.++++.+..+|..++.+- +.| ...
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5678888888888777765434443 3334567789999999999999998887765443321 111 224
Q ss_pred cCChHHHHHHHHHHhhc
Q 039715 422 LGEVGKAMIMFSKMLEE 438 (805)
Q Consensus 422 ~g~~~~A~~~~~~m~~~ 438 (805)
.+++.||...+++-.+.
T Consensus 458 qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKM 474 (629)
T ss_pred hccHHHHHHHHHHHHhh
Confidence 67888888888877653
No 416
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=40.63 E-value=5.3e+02 Score=28.30 Aligned_cols=103 Identities=11% Similarity=0.142 Sum_probs=75.2
Q ss_pred CCCCHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHH---HHhcCCHHHHHHHHHcC--CCCCCHH
Q 039715 541 WRPNNLTFV-GVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSL---LGRAGHLDKAAKLIEGI--PFQPSVM 614 (805)
Q Consensus 541 ~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~---~~~~g~~~eA~~~~~~~--~~~p~~~ 614 (805)
..|+..|+. .++.-+...|-+.+|+..+..+..- ..|+...|.-||.. ...+| +.-+.++++.| .+..|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 467777654 4666677888899999999888732 34477788888765 33445 77778888877 3457888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCC
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILD-FEPED 646 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~ 646 (805)
.|...+.-=..+|..+-+-.++.++.+ ++|+.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 898888888889988888888877766 56643
No 417
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.78 E-value=54 Score=24.28 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=11.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHH
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQ 537 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~ 537 (805)
.+|.||.+.|++++|.++.+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555554443
No 418
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.37 E-value=1.8e+02 Score=23.27 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=30.2
Q ss_pred cCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHH
Q 039715 289 KSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAV 328 (805)
Q Consensus 289 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (805)
..|+.+.|.++++.++ +.+-.|...++++-+.|+-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4578888888888888 77888888888888877755543
No 419
>PRK09169 hypothetical protein; Validated
Probab=38.99 E-value=1.1e+03 Score=31.56 Aligned_cols=469 Identities=10% Similarity=0.008 Sum_probs=255.8
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHh-----CCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHh-------CCCC
Q 039715 123 ISFVTTIQGYTVSSQFVEAVGLFSTLHR-----EGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKL-------GHDS 190 (805)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~ 190 (805)
..|..+.+.+++.-+.....+.+..... ..-..+...+..+|+++++-.+-..+...-..+... -...
T Consensus 123 ~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al 202 (2316)
T PRK09169 123 AQLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAM 202 (2316)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhc
Confidence 3455555555555444333333222221 112346777888888888877666555444443211 1123
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCC---CCCChhhHHHHHHHhhCCCCHHHHHHHHHH
Q 039715 191 NAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVG---FKPNNFTFAFVLKACLGLDTIRVAKSAHGC 267 (805)
Q Consensus 191 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 267 (805)
+..-...++++++|--+....+..-..+ -..+...+ ...+......+|+++++-.+-+..++.-..
T Consensus 203 ~~q~va~~lnalSKwp~~~~cr~a~~~l-----------A~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~ 271 (2316)
T PRK09169 203 DAQEVANALNALSKWPDSPRCRNAAERL-----------AERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEA 271 (2316)
T ss_pred chHHHHHHHHHHhcCCCcHHHHHHHHHH-----------HHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 4445566677777776665555544433 11221110 123456678888999887766555444333
Q ss_pred HHHh-------CCCCcHhHHHHHHHHHHcCCChHHHHHHHhhC--------C---CCCcccHHHHHHHHHhCCChhHH--
Q 039715 268 ALKT-------CYEMDLYVAVALLDLYTKSGEISNARRIFEEM--------P---KKDVIPWSFMIARYAQTDLSIDA-- 327 (805)
Q Consensus 268 ~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~---~~~~~~~~~li~~~~~~g~~~~A-- 327 (805)
+-.. ....+..-....+++++|-.+-+.+...-..+ . .-+..-....+.++++-.+.+.+
T Consensus 272 lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~ 351 (2316)
T PRK09169 272 LAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRA 351 (2316)
T ss_pred HHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHH
Confidence 2211 12345566667788888876654433222211 1 11333355667788877665543
Q ss_pred --HHHHHHHHHCC---CCCChhHHHHHHHHHhccCCchHH----HHHHHHHHHh-CC--CccHHHHHHHHHHHHhcCChH
Q 039715 328 --VELFCRMRQAF---VAPNQFTFVSVLQACATMEGLDLG----NQIHSLVVRV-GL--LSDVFVSNALMDVYAKCGRME 395 (805)
Q Consensus 328 --~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a----~~~~~~~~~~-g~--~~~~~~~~~Li~~y~~~g~~~ 395 (805)
..+-..+...- -..|..-+...+.++++-++-+.. ..+...+... +. ..|..-....+.+++|-+.-+
T Consensus 352 Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~ 431 (2316)
T PRK09169 352 AAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAE 431 (2316)
T ss_pred HHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCch
Confidence 23333332211 234566788889999988765433 2333333221 11 234455556777888876655
Q ss_pred HHHHHHhc----CCC-------CChhhHHHHHHHHHHcCChH----HHHHHHHHHhhc---CCCCChhhHHHHHHHHhcc
Q 039715 396 NSVELFAE----SPK-------RNHVTWNTMIVGYVQLGEVG----KAMIMFSKMLEE---QVPATEVTYSSVLRACASL 457 (805)
Q Consensus 396 ~A~~~f~~----~~~-------~~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~ 457 (805)
.+...... +.. -|..-..+.+.++.+-++.+ .+..+...+... .-.-+..-+..++.++++-
T Consensus 432 ~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKw 511 (2316)
T PRK09169 432 ACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKW 511 (2316)
T ss_pred HHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcC
Confidence 43333221 111 14445666677777766533 233444444321 1123455678899999998
Q ss_pred CCchhHHHHHHHH----HH---cCCCCcHhHHHHHHHHHHhcCCHHH----HHHHhhhcC-------CCCHhHHHHHHHH
Q 039715 458 AALEPGMQVHCLT----VK---ANYDMDVVVANALIDMYAKCGSITD----ARLVFDMMN-------DWNEVSWNAMISG 519 (805)
Q Consensus 458 ~~~~~a~~~~~~~----~~---~~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~-------~~~~~~~~~li~~ 519 (805)
+..+.....-..+ .. .--..+..-....+.+++|-.+.+. |..++..+. .-|...+...+.+
T Consensus 512 p~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnA 591 (2316)
T PRK09169 512 PDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNA 591 (2316)
T ss_pred CccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHH
Confidence 8877654432222 21 1123456667778888998776332 333444432 2367788888899
Q ss_pred HHhCCChHH----HHHHHHHHHHcCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC------CChHHHHH
Q 039715 520 YSMHGLSAE----VLKVFDLMQQRGW---RPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIE------PCIEHYTS 586 (805)
Q Consensus 520 ~~~~g~~~~----A~~l~~~m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~------p~~~~~~~ 586 (805)
+.+-+.... +..+...+.+.-- .-|..-+...+.++++-...+........+.....-. -+......
T Consensus 592 LSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN 671 (2316)
T PRK09169 592 LSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLAN 671 (2316)
T ss_pred HhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHH
Confidence 998776432 3445555443211 1255678889999999888777665555544322112 25677888
Q ss_pred HHHHHHhcCCHHHHHH
Q 039715 587 MVSLLGRAGHLDKAAK 602 (805)
Q Consensus 587 li~~~~~~g~~~eA~~ 602 (805)
++.++.|-.+.+.+.+
T Consensus 672 ~LnALSKWp~~~~c~~ 687 (2316)
T PRK09169 672 ALNALSKWPDEAACRA 687 (2316)
T ss_pred HHHHHHhCCCcHHHHH
Confidence 8899999887665433
No 420
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.32 E-value=34 Score=29.79 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=25.5
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039715 520 YSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC 555 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 555 (805)
....|.-.+|..+|++|++.|-.||. +..|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34557778899999999999999984 45555543
No 421
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=38.00 E-value=5.2e+02 Score=27.48 Aligned_cols=93 Identities=13% Similarity=0.086 Sum_probs=61.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHH---HHHH----HHH
Q 039715 553 SACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVM---IWRA----LLG 621 (805)
Q Consensus 553 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~---~~~~----l~~ 621 (805)
-++...|+...-...+......-.+..| ....|+|++.|...+.++.|..++.+.+ -|+.. -|-. ++.
T Consensus 177 l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-~pe~~snne~ARY~yY~Gr 255 (493)
T KOG2581|consen 177 LSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-YPEAASNNEWARYLYYLGR 255 (493)
T ss_pred HHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-CccccccHHHHHHHHHHhh
Confidence 3455666766666666555433233333 3456777888888899999999999886 23221 2222 222
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 622 ACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 622 ~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
.-..++++..|.+.+-+++...|++
T Consensus 256 IkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 256 IKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHhhcchhHHHHHHHHHHHhCcch
Confidence 3456889999999999999999964
No 422
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=37.98 E-value=4.4e+02 Score=26.65 Aligned_cols=145 Identities=11% Similarity=-0.050 Sum_probs=69.9
Q ss_pred HHHHHHHhhhcCCC-CHhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----C--CHH
Q 039715 495 ITDARLVFDMMNDW-NEVSWNAMISGYSM----HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNG-----G--LLE 562 (805)
Q Consensus 495 ~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g--~~~ 562 (805)
..+|.+.|....+. +......|...|.. ..+..+|...|++..+.|..+-..+...+...+... - +..
T Consensus 93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~ 172 (292)
T COG0790 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDK 172 (292)
T ss_pred HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHH
Confidence 45555555544333 23333334444443 236677777777777766443212222222223221 0 223
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC-----------
Q 039715 563 QGEAYFKSMVANYGIEPCIEHYTSMVSLLGR----AGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHN----------- 627 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g----------- 627 (805)
.|...+..+... + +......+..+|.. ..++++|..+|++....-+...+..+. .+...|
T Consensus 173 ~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~ 247 (292)
T COG0790 173 KALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTA 247 (292)
T ss_pred hHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhccc
Confidence 566666666543 2 33344444444433 336677777777653233333333333 444444
Q ss_pred ----CHHHHHHHHHHHhccCC
Q 039715 628 ----NVEIGRLSAQHILDFEP 644 (805)
Q Consensus 628 ----~~~~a~~~~~~~~~~~p 644 (805)
+...|...+.+..+..+
T Consensus 248 ~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 248 AKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred ccCCCHHHHHHHHHHHHHcCC
Confidence 56666666666665544
No 423
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.56 E-value=2.8e+02 Score=29.41 Aligned_cols=26 Identities=4% Similarity=-0.314 Sum_probs=15.0
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC
Q 039715 519 GYSMHGLSAEVLKVFDLMQQRGWRPN 544 (805)
Q Consensus 519 ~~~~~g~~~~A~~l~~~m~~~g~~p~ 544 (805)
.+...+++..|.++|+++.+..+.|+
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChh
Confidence 44455666666666666666544433
No 424
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=37.32 E-value=4.6e+02 Score=26.59 Aligned_cols=54 Identities=9% Similarity=0.121 Sum_probs=30.5
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHhHHHHHHHHHHhCCChHHH
Q 039715 476 DMDVVVANALIDMYAKCGSITDARLVFDMMN-----DWNEVSWNAMISGYSMHGLSAEV 529 (805)
Q Consensus 476 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A 529 (805)
.++..+...+++.+++.+++.+-.++++... ..|...|..+|..-...|+..-.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 3444555555666666666666666555443 23556666666666666665433
No 425
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.75 E-value=2.1e+02 Score=22.99 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=22.0
Q ss_pred hcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHH
Q 039715 491 KCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEV 529 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 529 (805)
..|+.+.|.+++..+. +....+...+.++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3456666666666666 5555666666666655554433
No 426
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.55 E-value=5.9e+02 Score=30.10 Aligned_cols=176 Identities=10% Similarity=0.062 Sum_probs=106.9
Q ss_pred cCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 039715 422 LGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLV 501 (805)
Q Consensus 422 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 501 (805)
+.++++.+.+.+.-.--| .++|.-+.+.|..+-|..+.+ |..+ -.+....||+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVk---------D~~t---RF~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVK---------DERT---RFELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeec---------Ccch---heeeehhcCCHHHHHHH
Confidence 456777776655443222 133344445555555544322 1111 12345678999999888
Q ss_pred hhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh
Q 039715 502 FDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI 581 (805)
Q Consensus 502 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 581 (805)
-.++- |...|..|+..-..+|+.+-|.-.|++... |..|--.|.-.|+.++-.++.+.+.. .-|.
T Consensus 666 akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~----r~D~ 730 (1202)
T KOG0292|consen 666 AKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI----RNDA 730 (1202)
T ss_pred HHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh----hhhh
Confidence 76654 667899999999999999999999888765 22222234556888887776554432 2232
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
.. ..+..+ -.|+.+|=.++++.....|- .|- .-..||.-++|.++.+++-.
T Consensus 731 ~~-~~qnal--Yl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 731 TG-QFQNAL--YLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HH-HHHHHH--HhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 11 111112 25888888888887753331 121 12468999999998888766
No 427
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.20 E-value=1.1e+02 Score=26.86 Aligned_cols=87 Identities=16% Similarity=0.088 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHhc-cCCCC-cchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEEeeC
Q 039715 614 MIWRALLGACIIH---NNVEIGRLSAQHILD-FEPED-EATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYFRAG 688 (805)
Q Consensus 614 ~~~~~l~~~~~~~---g~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f~~~ 688 (805)
.+--++.+++... .+..+++.+++.+++ -.|+. -.....|+-.+++.|+++.+.+-.. .+.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd------------~ll-- 98 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVD------------ALL-- 98 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHH------------HHH--
Confidence 3344455555443 357788999999997 45543 3445567778899999999988000 011
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHcCcc
Q 039715 689 DTSHADMNIIRGMLEWLNMKSRKAGYI 715 (805)
Q Consensus 689 ~~~~~~~~~i~~~l~~l~~~~~~~g~~ 715 (805)
...|+..+....=+.+.++|.++|++
T Consensus 99 -~~e~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 99 -ETEPNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred -hhCCCcHHHHHHHHHHHHHHhhccee
Confidence 11234444444444566788888865
No 428
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=35.86 E-value=90 Score=31.26 Aligned_cols=49 Identities=16% Similarity=0.007 Sum_probs=40.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 620 LGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 620 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...|...|.+.+|.++.++++.++|-+...+-.|-++|+..|+--+|.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhh
Confidence 3558888999999999999999999888889999999998887555543
No 429
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=35.36 E-value=3.2e+02 Score=27.47 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=12.0
Q ss_pred HHHHHHhCCChhHHHHHHH
Q 039715 314 MIARYAQTDLSIDAVELFC 332 (805)
Q Consensus 314 li~~~~~~g~~~~A~~~~~ 332 (805)
=|.+++..+++.+++...-
T Consensus 89 GIQALAEmnrWreVLsWvl 107 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVL 107 (309)
T ss_pred hHHHHHHHhhHHHHHHHHH
Confidence 3567777777777665443
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=35.29 E-value=5.2e+02 Score=26.64 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhcCCC--------CHhHHHH-HHHHHHhCCChHHHHHHHHHHHHcCCCCCH----H
Q 039715 480 VVANALIDMYAKCGSITDARLVFDMMNDW--------NEVSWNA-MISGYSMHGLSAEVLKVFDLMQQRGWRPNN----L 546 (805)
Q Consensus 480 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ 546 (805)
...-.....|++.|+.+.|.+.+.+..++ |++.+.. |.--|..+.-..+-++-.+.+.++|-.-+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 44556677888999999988888766543 4444333 223344455556667777777777754332 2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
+|-.+- |....++.+|-.+|-....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 444442 3344567777777766553
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.18 E-value=1.1e+02 Score=24.76 Aligned_cols=26 Identities=8% Similarity=-0.050 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc
Q 039715 617 RALLGACIIHNNVEIGRLSAQHILDF 642 (805)
Q Consensus 617 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 642 (805)
-.+.......|+.++|...+++++++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33444566778888888888877775
No 432
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.79 E-value=58 Score=37.63 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=25.3
Q ss_pred HhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039715 592 GRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHI 639 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 639 (805)
..+|+++.|++.-+++. |..+|..|+.....+|+.+.|+..|++.
T Consensus 654 Le~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 34566666665555543 4455666666655666666665555544
No 433
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.66 E-value=85 Score=23.24 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 544 NNLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 544 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
|-.--..++.++...|++++|.++.+.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444445566666777777777777666653
No 434
>PF07149 Pes-10: Pes-10; InterPro: IPR009819 This family consists of several Caenorhabditis elegans pes-10 and related proteins. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=34.65 E-value=5.6e+02 Score=26.83 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=70.6
Q ss_pred cCCCCCcchHHHHHHHHHhCCCchHHHHHhccCCCC-----CcchHHHHHHHHHcCCChhHHHHHHHHHH----------
Q 039715 85 KGNCLDLFATNVLLNVYVKLNRLPDATKLFDEMPER-----NTISFVTTIQGYTVSSQFVEAVGLFSTLH---------- 149 (805)
Q Consensus 85 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------- 149 (805)
.+..|..++ -.|+..+....+.+-++-.|.-+..- +-..++.+=++-.-++++.+|..+..+..
T Consensus 91 e~~~~ee~v-v~Ll~~l~~~~d~~~vrlaf~lL~dl~~~le~ye~l~i~~~A~~~~~q~~EA~~Li~kv~~~l~~E~~~e 169 (370)
T PF07149_consen 91 EMRFPEEFV-VNLLTNLMQFEDLDYVRLAFRLLNDLDFNLEDYEELGIYDRAMQFQDQFVEADELIDKVEMILQDEILDE 169 (370)
T ss_pred hccCchHHH-HHHHHHHHcCCcHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Confidence 344556555 44555556667766666666554432 11224455556666778888888877763
Q ss_pred --------------------hCCCCCC------------cchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchh---h
Q 039715 150 --------------------REGHELN------------PFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAF---V 194 (805)
Q Consensus 150 --------------------~~g~~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~ 194 (805)
.+|+-.. ...+...+..|.+.|+......-........++++.. -
T Consensus 170 ~d~Ee~e~~e~d~~~~~~e~esg~~~~~ee~~~~~~~~~~EI~M~~La~~iksgn~~~I~~AI~~~~~~~~pL~lyrKYe 249 (370)
T PF07149_consen 170 DDQEEEEDEEIDDAEENSETESGIFTEEEEEEFRFDAAIMEICMRNLAQSIKSGNEEKISAAIKFFGEFEFPLELYRKYE 249 (370)
T ss_pred hhhhhcccccccchhhcCCCcccccchhhhhhhhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 1111111 1123345566777777766655555555555555432 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhh
Q 039715 195 GTALIDAFSVCGCVEFARKVFDGL 218 (805)
Q Consensus 195 ~~~li~~y~~~g~~~~A~~~~~~~ 218 (805)
-..||-.|+. ..+.|..+++.+
T Consensus 250 I~~LI~~~~~--~~~~A~~L~~~I 271 (370)
T PF07149_consen 250 IQRLIEKHGI--HNEDAMDLIDKI 271 (370)
T ss_pred HHHHHHHhcc--chhHHHHHHHHH
Confidence 2334444433 356777777766
No 435
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=34.52 E-value=2.9e+02 Score=23.96 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 039715 529 VLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMV 588 (805)
Q Consensus 529 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 588 (805)
..+-++....-.+.|++...-..|.||.+.+++..|.++|+.++.+ ..+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 3444555666678899999999999999999999999999988765 334344566554
No 436
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=33.94 E-value=4.4e+02 Score=25.42 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcCCCCChh-hHHHHHH--HHHHcCChHHHHHHHHHHhhc
Q 039715 378 VFVSNALMDVYAKCGRMENSVELFAESPKRNHV-TWNTMIV--GYVQLGEVGKAMIMFSKMLEE 438 (805)
Q Consensus 378 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~ 438 (805)
+.++|.|.--+...|+++.|.+.|+..-+-|+. -|..+-. ++--.|++.-|.+-|.+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 467777777777888888888888877665432 2222222 122356777777766666543
No 437
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.92 E-value=5.1e+02 Score=27.68 Aligned_cols=61 Identities=10% Similarity=-0.013 Sum_probs=39.7
Q ss_pred CHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChh--hHHHHHHHhh--CCCCHHHHHHHHHHHHHh
Q 039715 207 CVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNF--TFAFVLKACL--GLDTIRVAKSAHGCALKT 271 (805)
Q Consensus 207 ~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 271 (805)
....|..+|+ .+++..|.++|.++... +.++.. .+..+..+|. ..-+.+.|.+.++...+.
T Consensus 134 ~~~~a~~l~n---~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFN---RYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456666665 67888888888888876 555554 3444444444 455677788777776654
No 438
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.81 E-value=1.3e+03 Score=30.95 Aligned_cols=156 Identities=13% Similarity=0.049 Sum_probs=82.2
Q ss_pred HhhCCCCHHHHHHHHHHHHHhCC--CCcHhHHHHHHHHHHcCCChHHHHHHHhh-CCCCCcccHHHHHHHHHhCCChhHH
Q 039715 251 ACLGLDTIRVAKSAHGCALKTCY--EMDLYVAVALLDLYTKSGEISNARRIFEE-MPKKDVIPWSFMIARYAQTDLSIDA 327 (805)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A 327 (805)
+-.+.+.+..|...++.-..... ......+..+...|+.-+++|...-+... ...+ +....|.-....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHHHH
Confidence 44455556666655555200000 11122333444577777777766666552 2222 234455566677888888
Q ss_pred HHHHHHHHHCCCCCC-hhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHH-HHHHHHHHhcCChHHHHHHHhcCC
Q 039715 328 VELFCRMRQAFVAPN-QFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVS-NALMDVYAKCGRMENSVELFAESP 405 (805)
Q Consensus 328 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~~y~~~g~~~~A~~~f~~~~ 405 (805)
...|+.+.+. .|+ ..+++-++......+.++...-..+.....- .+...-+ +.=+.+--+.+++|.......
T Consensus 1469 ~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1469 AACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 8888888764 344 5667777777666676666655444333221 2222222 222333355566665555544
Q ss_pred CCChhhHHHH
Q 039715 406 KRNHVTWNTM 415 (805)
Q Consensus 406 ~~~~~~~~~l 415 (805)
.++..+|.+.
T Consensus 1543 ~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 DRNIEYWSVE 1552 (2382)
T ss_pred cccccchhHH
Confidence 4455556554
No 439
>PF15161 Neuropep_like: Neuropeptide-like
Probab=33.18 E-value=17 Score=25.61 Aligned_cols=18 Identities=33% Similarity=0.719 Sum_probs=12.8
Q ss_pred eeeeccCcchhhHHHHhhh
Q 039715 760 KNLRICVDCHTAIKIISKI 778 (805)
Q Consensus 760 ~~~~~c~~~h~~~k~~s~~ 778 (805)
..-|-|.|||.+- |+.+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 4568899999765 66543
No 440
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=32.88 E-value=2.9e+02 Score=30.79 Aligned_cols=87 Identities=10% Similarity=0.029 Sum_probs=41.0
Q ss_pred CCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCC-CchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHH
Q 039715 151 EGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHD-SNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNF 229 (805)
Q Consensus 151 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~ 229 (805)
.|+..+......+... ..|++..+...++++...+-. ....+...+-. ....-.-+....+++.+..|+..+|+.+
T Consensus 203 egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~-llg~~~~~~if~L~~ai~~~d~~~Al~~ 279 (507)
T PRK06645 203 ENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQ-MLGLVDSSVIIEFVEYIIHRETEKAINL 279 (507)
T ss_pred cCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHH-HHCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555444444442 235666666666665443211 11122222222 2222333444555555556666666666
Q ss_pred HHHHHHCCCCC
Q 039715 230 FSQMRAVGFKP 240 (805)
Q Consensus 230 ~~~m~~~g~~p 240 (805)
++++...|..|
T Consensus 280 l~~L~~~g~~~ 290 (507)
T PRK06645 280 INKLYGSSVNL 290 (507)
T ss_pred HHHHHHcCCCH
Confidence 66666655543
No 441
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=32.63 E-value=2.7e+02 Score=22.50 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--cchHHHHHHHHHhcC
Q 039715 612 SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPED--EATHVLLSNIYAMAR 661 (805)
Q Consensus 612 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g 661 (805)
|....-.+...+...|++++|++.+-.+++.+|+. ..+-..|..++...|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 45566677777888888888888888888877643 455556666655555
No 442
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=32.16 E-value=27 Score=19.00 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=8.6
Q ss_pred CcchhhHHHHhh
Q 039715 766 VDCHTAIKIISK 777 (805)
Q Consensus 766 ~~~h~~~k~~s~ 777 (805)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 356888888874
No 443
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=32.08 E-value=5.6e+02 Score=26.02 Aligned_cols=56 Identities=11% Similarity=-0.013 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHH
Q 039715 312 SFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSL 368 (805)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 368 (805)
+...+.|..+|.+.+|.++-++.+... +.+...+-.++..++..||--.+..-++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 344456666666666666666665532 22444455555556666654444444433
No 444
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=31.35 E-value=93 Score=32.81 Aligned_cols=48 Identities=8% Similarity=0.194 Sum_probs=27.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..|.+.++.+.|+....+.+-++|.....+..-+-++....||.+|.+
T Consensus 236 ~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 236 TCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556655555555666555555555555555555555555
No 445
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.32 E-value=1.8e+02 Score=27.02 Aligned_cols=38 Identities=13% Similarity=0.313 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 039715 618 ALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNI 656 (805)
Q Consensus 618 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 656 (805)
..+..|.+.|.+++|.+++++..+ +|++...-.-|..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 345669999999999999999999 88766554444444
No 446
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.25 E-value=5.3e+02 Score=25.22 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=18.4
Q ss_pred HHhCCChHHHHHHHHHHHHcCCC
Q 039715 520 YSMHGLSAEVLKVFDLMQQRGWR 542 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~g~~ 542 (805)
....|+++.|+++.+.+++.|..
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCC
Confidence 35678899999999999888754
No 447
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.18 E-value=95 Score=31.40 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVL 552 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 552 (805)
-||..|..-.+.|+.++|+.+++|..+.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46688888888999999999999999988766566665543
No 448
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=30.16 E-value=1e+02 Score=33.15 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=29.5
Q ss_pred HHcCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 604 IEGIPFQPSV--MIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 604 ~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
|....++|.- .+.++-++.+.+++|+.-|-..+++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3344445542 356777777889999999999999999999954
No 449
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=30.08 E-value=1.2e+02 Score=20.97 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=20.6
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 039715 133 TVSSQFVEAVGLFSTLHREGHELNPFAFTAFLK 165 (805)
Q Consensus 133 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 165 (805)
.+.|-..++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666667777766666666665555554
No 450
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.84 E-value=86 Score=31.69 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHH
Q 039715 311 WSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVS 348 (805)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 348 (805)
||..|...++.|+.++|+.++++..+.|+.--..||..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 77888888999999999999999988887655555543
No 451
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=29.83 E-value=1.2e+02 Score=33.54 Aligned_cols=65 Identities=15% Similarity=0.095 Sum_probs=36.5
Q ss_pred CCCCcch--HHHHHHHHHc-CCChhHHHHHHHHHHhCCCCCCcc---hHHHHHHHHhccCCccchhhHHHHHH
Q 039715 118 PERNTIS--FVTTIQGYTV-SSQFVEAVGLFSTLHREGHELNPF---AFTAFLKVLVSMGWAELCPCVFACVY 184 (805)
Q Consensus 118 ~~~~~~~--~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~ 184 (805)
.+++..+ +..+.+.|.+ .|+..+|+..+....- +.|+-. ...++...+-+.|...+|--++....
T Consensus 206 lq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~h--f~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~ 276 (886)
T KOG4507|consen 206 LQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALH--FSSRHNKDIALLSLATVLHRAGFSADAAVILHAAL 276 (886)
T ss_pred hhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhh--hCCcccccchhhhHHHHHHHcccccchhheeehhc
Confidence 3444443 4556666755 6788888888766654 333322 33344455567776666655554333
No 452
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.83 E-value=2.2e+02 Score=25.44 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=24.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhcc
Q 039715 310 PWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATM 356 (805)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 356 (805)
.-..++..+.+.+..-.|.++++++.+.+..-+..|....|..+...
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 34455555555555556666666666555554455544444444433
No 453
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.76 E-value=6.5e+02 Score=26.10 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC 580 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 580 (805)
|..+..-+.++|..+.|..+++.+.+-.=..|.
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 334444467889999999999888855333554
No 454
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=29.76 E-value=3.8e+02 Score=28.99 Aligned_cols=129 Identities=14% Similarity=0.154 Sum_probs=77.8
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039715 557 NGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP--FQPSVMIWRALLGACIIHNNVEIGRL 634 (805)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~ 634 (805)
..|++..|-+-+......+.-.|+.... ....+...|.++.|...+.... +.....+...++......|+.++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3466666655444555454555554333 3344667899999999987663 23345567777788888899999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh--------cCC-CCceEEECCeEEEEee
Q 039715 635 SAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS--------KEP-GLSWIENQGMVHYFRA 687 (805)
Q Consensus 635 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~--------~~~-~~s~~~~~~~~~~f~~ 687 (805)
.++.++.-+-++++....-+-.-.+.|-+|++.- ..| ...|+..-.....|--
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~ 440 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFND 440 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccC
Confidence 9999998766665544332222333444555544 122 4556654444444433
No 455
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=29.57 E-value=5e+02 Score=25.55 Aligned_cols=151 Identities=11% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC-SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRA 594 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 594 (805)
++..+-+.|++++++..++++.+.+...+..--+.+..+| .-.|....+.+.+..+..+-.-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Q ss_pred ------CCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHhc-----cCCCC
Q 039715 595 ------GHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNV-----------------EIGRLSAQHILD-----FEPED 646 (805)
Q Consensus 595 ------g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----------------~~a~~~~~~~~~-----~~p~~ 646 (805)
.--.+.+++++..- -|....-.+.+-.+...||+ +.|..+|+++++ +.|.+
T Consensus 86 ie~EL~~~C~eii~lId~~L-ip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSL-IPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-HHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Q ss_pred cchHHHHHH----HHHhcCChHHHhh
Q 039715 647 EATHVLLSN----IYAMARSWEKAAS 668 (805)
Q Consensus 647 ~~~~~~l~~----~~~~~g~~~~a~~ 668 (805)
|..+-...| .|-..|+.++|.+
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ 190 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIE 190 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHH
No 456
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.14 E-value=2e+02 Score=19.95 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=17.6
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVL 552 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 552 (805)
.+.|-.+++..++++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555666666666666555555554444
No 457
>PHA02875 ankyrin repeat protein; Provisional
Probab=28.85 E-value=7.5e+02 Score=26.55 Aligned_cols=78 Identities=14% Similarity=0.054 Sum_probs=40.5
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhH--HHHHHHHHhccCCchHHHHHHHHHHHhCCCccHH--HHHHHHHHHHhcCCh
Q 039715 319 AQTDLSIDAVELFCRMRQAFVAPNQFT--FVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVF--VSNALMDVYAKCGRM 394 (805)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~ 394 (805)
++.|+.+- ++.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..++.. .....+...++.|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 44555543 444555677666532 233444555566654 344455556544322 112334455667777
Q ss_pred HHHHHHHhcC
Q 039715 395 ENSVELFAES 404 (805)
Q Consensus 395 ~~A~~~f~~~ 404 (805)
+.+..+++.-
T Consensus 82 ~~v~~Ll~~~ 91 (413)
T PHA02875 82 KAVEELLDLG 91 (413)
T ss_pred HHHHHHHHcC
Confidence 7776666543
No 458
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=28.47 E-value=3e+02 Score=23.85 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHH
Q 039715 326 DAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVR 371 (805)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 371 (805)
+..+-++.+....+.|+.......|++|.+.+|+..|..+++-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444555666667888999999999999999999999988887754
No 459
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.85 E-value=4e+02 Score=23.08 Aligned_cols=74 Identities=9% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhH-HHHHHHHHHhcCCHHHHHHHhhh
Q 039715 429 MIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVV-ANALIDMYAKCGSITDARLVFDM 504 (805)
Q Consensus 429 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~ 504 (805)
.+..+.+.....--|...|..+--.+++.-+ .+.++|..|...|+...... |......+.+.|++++|.++|+.
T Consensus 50 er~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 50 ERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
No 460
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.84 E-value=1.1e+02 Score=24.92 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=33.0
Q ss_pred HHcCCHHHHHHHHHHHhccCCCC---------cchHHHHHHHHHhcCChHHHhh
Q 039715 624 IIHNNVEIGRLSAQHILDFEPED---------EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+.||+..|.+.+.+.++..... ..+...++.++...|.+++|..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~ 62 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQ 62 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 46788888888888777653321 1234568889999999999976
No 461
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.78 E-value=2.1e+02 Score=26.43 Aligned_cols=53 Identities=13% Similarity=-0.058 Sum_probs=31.2
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCc
Q 039715 307 DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGL 359 (805)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 359 (805)
....-..++..+...+..-.|.++++.+.+.+..++..|....|..+...|-+
T Consensus 24 ~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 24 LTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33334455555555555666777777777666666666665555555555443
No 462
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.76 E-value=1.9e+03 Score=30.98 Aligned_cols=412 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHhcCC---HHHHHHHHhhhccccHHHHHHHHHHHHHCC----CCCChhhHHHHHHHhhCCCCHHHHHHH
Q 039715 192 AFVGTALIDAFSVCGC---VEFARKVFDGLFNDCFEEALNFFSQMRAVG----FKPNNFTFAFVLKACLGLDTIRVAKSA 264 (805)
Q Consensus 192 ~~~~~~li~~y~~~g~---~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~~ 264 (805)
..+-|+++.+..++-. ..-=.-.+-.-..|.+..++.+++...... ..++....-++...|......|.---+
T Consensus 2397 pnvln~~v~s~~~~~~~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~~~~~~~~~~~dsl~elY~~L~E~Dm~~Gl 2476 (3550)
T KOG0889|consen 2397 PNVLNALVESLVKIVPPIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEMENTKGDESCLDSLAELYRSLNEEDMFYGL 2476 (3550)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhHHHHHHHH
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 039715 265 HGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAP 341 (805)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 341 (805)
++ ..-.+.-+...-.|.+.|.+++|..++++...+ +...|..-=..+-...-..-|.++-+.+......-
T Consensus 2477 wr-------rr~~~~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k 2549 (3550)
T KOG0889|consen 2477 WR-------RRAKFPETMVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFGK 2549 (3550)
T ss_pred HH-------HhhccHHHHHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCc---cHHHHHHHHHHHHhcCC------------hHHHHHHHhcCCC
Q 039715 342 NQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLS---DVFVSNALMDVYAKCGR------------MENSVELFAESPK 406 (805)
Q Consensus 342 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~------------~~~A~~~f~~~~~ 406 (805)
....+..++.+.-+..++..-+..+....+.-.++ ....+.+....+.+..+ .+.+.+-++..+.
T Consensus 2550 ~~~~~~llle~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~ 2629 (3550)
T KOG0889|consen 2550 HEGNYELLLECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPE 2629 (3550)
T ss_pred ccCCceeeeehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCcc
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCC--cHhHHHH
Q 039715 407 RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDM--DVVVANA 484 (805)
Q Consensus 407 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 484 (805)
.-......++.++.+--...||..++..+.+.. .+.....+..-+.+......+-..+ |...|+.
T Consensus 2630 ~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n-------------~~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsd 2696 (3550)
T KOG0889|consen 2630 RVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGN-------------VQNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSD 2696 (3550)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhccccc-------------ccccchhHHHHHHHHHHHhhcCCCcchhHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHh-----CCChHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 039715 485 LIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSM-----HGLSAE--VLKVFDLMQQRGWRPNNLTFVGVLSACSN 557 (805)
Q Consensus 485 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~--A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 557 (805)
++.- -...|..+..+|.. ...... +..-+.+|-. +.+.+.....+
T Consensus 2697 l~~W--------------------Rq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~--------~in~fakvArk 2748 (3550)
T KOG0889|consen 2697 LITW--------------------RQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAW--------AINRFAKVARK 2748 (3550)
T ss_pred HHHH--------------------HHHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHH--------HHHHHHHHHHh
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHH-------HHhcCCHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSL-------LGRAGHLDKAAKLIEGI-----PFQPSVMIWRALLGACII 625 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-------~~~~g~~~eA~~~~~~~-----~~~p~~~~~~~l~~~~~~ 625 (805)
.|..+.+...+.++-.. |+.+.-.++... |...+...+++++++.. +.+-.+..++-=+.-..+
T Consensus 2749 h~l~~vcl~~L~~iytl----p~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~k 2824 (3550)
T KOG0889|consen 2749 HGLPDVCLNQLAKIYTL----PNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEK 2824 (3550)
T ss_pred cCChHHHHHHHHHHhcc----CcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHH
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 626 HNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 626 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
.|+.++|-.+|..+.++.-.-+.++...|.
T Consensus 2825 L~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~ 2854 (3550)
T KOG0889|consen 2825 LGKFEEANKAFSAAVQIDDGLGKAWAEWGK 2854 (3550)
T ss_pred hcCcchhHHHHHHHHHHHhhhHHHHHHHHH
No 463
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=27.67 E-value=73 Score=27.81 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=24.4
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 039715 319 AQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQAC 353 (805)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 353 (805)
-..|.-.+|..+|++|++.|-+||. ++.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667899999999999988885 45555543
No 464
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.61 E-value=1.8e+02 Score=33.23 Aligned_cols=27 Identities=4% Similarity=0.150 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
+...|+..|....+++..+++.+.+..
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh
Confidence 445556666666777777777776665
No 465
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=27.22 E-value=7e+02 Score=25.63 Aligned_cols=162 Identities=13% Similarity=0.120 Sum_probs=89.3
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH
Q 039715 467 HCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL 546 (805)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 546 (805)
++.+..+++-+.......-++.+.+.+.+|-+..++...-..+ ..-+++ .. +-.+.+.-++++.+. +.|
T Consensus 23 lEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~se-d~p~a~----~e--kr~~Vla~lkeLe~e-v~p--- 91 (432)
T KOG2758|consen 23 LEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSE-DMPNAL----VE--KRTEVLAELKELEEE-VAP--- 91 (432)
T ss_pred HHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccc-cchHHH----HH--HHHHHHHHHHHHHHH-HHH---
Confidence 4444445555666666677777778888888888877663110 001111 11 122333333333332 111
Q ss_pred HHHHHH---HHHHcCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHH---cCCCCCCH----HH
Q 039715 547 TFVGVL---SACSNGGLLEQGEAYFKSMVANYGIEPCI-EHYTSMVSLLGRAGHLDKAAKLIE---GIPFQPSV----MI 615 (805)
Q Consensus 547 t~~~ll---~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~---~~~~~p~~----~~ 615 (805)
...++ ........-.+....++.+.+.|++.|+. ++.--...-...||++..|-+++- .....||. ..
T Consensus 92 -iv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsal 170 (432)
T KOG2758|consen 92 -IVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSAL 170 (432)
T ss_pred -HHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHH
Confidence 11111 11122223345577888888999999964 455556666778999999988643 33224443 45
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 616 WRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 616 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
|+-|.+-- ..-+++.|.+-+.++-+
T Consensus 171 wGKlASEI-L~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 171 WGKLASEI-LTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 66554432 24577888877766655
No 466
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=26.16 E-value=4e+02 Score=25.84 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHH
Q 039715 513 WNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-----NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSM 587 (805)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 587 (805)
.|.|+--|.-+..+.+|.+.|.+-.. +.| +...=..-+......|++++|.+....+... -++-|.+.+-.|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~e~~--i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAKESG--IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhccccC--CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Q ss_pred HHH----HHhcCCHHHHHHHHHc
Q 039715 588 VSL----LGRAGHLDKAAKLIEG 606 (805)
Q Consensus 588 i~~----~~~~g~~~eA~~~~~~ 606 (805)
... +.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
No 467
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.88 E-value=2.8e+02 Score=22.12 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=27.4
Q ss_pred HhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHH
Q 039715 490 AKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEV 529 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 529 (805)
+...+.+.|.++++.++.++..+|.+...++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3455677777777777777777777777777766654433
No 468
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=24.92 E-value=3.6e+02 Score=28.15 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=38.0
Q ss_pred HHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHH
Q 039715 148 LHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEAL 227 (805)
Q Consensus 148 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~ 227 (805)
..+.|++.+..+...++..+. |++..+.+-.+.+.-..... ..+...+-...++... ...-.+.+.+..|+..+|+
T Consensus 153 ~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~-~I~~~~V~~~v~~~~~-~~~f~l~dail~g~~~~a~ 228 (334)
T COG1466 153 AKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDK-EITLEDVEEVVSDVAE-FNIFDLADALLKGDVKKAL 228 (334)
T ss_pred HHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCC-cCCHHHHHHHHhcccc-CCHHHHHHHHHCCCHHHHH
Confidence 445566666655555555444 44444444333333322221 2222222222222111 1123344444556666666
Q ss_pred HHHHHHHHCCCCC
Q 039715 228 NFFSQMRAVGFKP 240 (805)
Q Consensus 228 ~~~~~m~~~g~~p 240 (805)
.+++++...|..|
T Consensus 229 ~~l~~L~~~ge~p 241 (334)
T COG1466 229 RLLRDLLLEGEEP 241 (334)
T ss_pred HHHHHHHHcCCcH
Confidence 6666666555443
No 469
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.28 E-value=82 Score=30.38 Aligned_cols=46 Identities=20% Similarity=0.162 Sum_probs=42.7
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 623 CIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 623 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
....|+.+-|.+++.+++++-|+....+..++..-.++|+++.|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~ 50 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAA 50 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHH
Confidence 3467899999999999999999999999999999999999999988
No 470
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.24 E-value=2e+02 Score=22.87 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=30.6
Q ss_pred HHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHH
Q 039715 287 YTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDA 327 (805)
Q Consensus 287 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 327 (805)
.+...+.+.|.++++.++.++..+|....+++-..|+..-|
T Consensus 40 ~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 40 QAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34456678888888888888888888888888777765444
No 471
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=24.21 E-value=8.9e+02 Score=25.81 Aligned_cols=48 Identities=8% Similarity=-0.114 Sum_probs=28.2
Q ss_pred HHHhcCCHHHHHHHhhhcCCCC--------HhHHHHHHHHHHh--CCChHHHHHHHHH
Q 039715 488 MYAKCGSITDARLVFDMMNDWN--------EVSWNAMISGYSM--HGLSAEVLKVFDL 535 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~--~g~~~~A~~l~~~ 535 (805)
.+.+.+++..|.++|+++..+. ...|-.+..+|.. .-++++|.+.+++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4556788888888888776542 1233334444443 3455666666654
No 472
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=23.43 E-value=28 Score=25.94 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=16.4
Q ss_pred ceEEEecCCccccccccccCC
Q 039715 781 REIIIRDVHRFHHFQDGCCSC 801 (805)
Q Consensus 781 ~~~~~~d~~~~h~~~~g~csc 801 (805)
..|=+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 356678999999999998653
No 473
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=23.22 E-value=1.4e+02 Score=30.26 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRA-LLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
|+..|.-.+.---+.|.+.+...++.+. ..+| |+..|-. --.-+..+++++-+..++.+.+.++|++|..+..
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 3333433333333344444444444433 2234 4445533 2223567888888888888888888888877653
No 474
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.62 E-value=2.7e+02 Score=25.66 Aligned_cols=61 Identities=13% Similarity=-0.004 Sum_probs=31.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHH
Q 039715 536 MQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLD 598 (805)
Q Consensus 536 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 598 (805)
+.+.|+++...-. .++..+...+..-.|.++++.+.+. +...+..+.---++.|.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3445665554432 2333333334455677777777654 44444443333346677777665
No 475
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=22.50 E-value=6.6e+02 Score=23.73 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=35.7
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHcCC--------------CCcHhHHHHHHHHHHhcCCHHHHHHHhhh
Q 039715 449 SVLRACASLAALEPGMQVHCLTVKANY--------------DMDVVVANALIDMYAKCGSITDARLVFDM 504 (805)
Q Consensus 449 ~ll~a~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 504 (805)
+++-.|.+..++.+++.+++.+.+..+ .+--.+.|.-...+.++|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 455566677777777777776654321 23334556666777777777777777764
No 476
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=22.39 E-value=6.7e+02 Score=23.72 Aligned_cols=95 Identities=9% Similarity=0.157 Sum_probs=51.2
Q ss_pred HHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCC----
Q 039715 299 IFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGL---- 374 (805)
Q Consensus 299 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---- 374 (805)
+..+..++..++|-....+-++.-+.+++-+.|- ..+-.+++-.|-+..++.+++.+++.+.+..+
T Consensus 98 Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~ 167 (233)
T PF14669_consen 98 LTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTS 167 (233)
T ss_pred HHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3334444555666666666666555444333221 11223455566677777778777777765432
Q ss_pred ----------CccHHHHHHHHHHHHhcCChHHHHHHHhc
Q 039715 375 ----------LSDVFVSNALMDVYAKCGRMENSVELFAE 403 (805)
Q Consensus 375 ----------~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 403 (805)
.+--.+.|.....+.+.|.+|.|..++++
T Consensus 168 LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 168 LKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred ccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 12233445555566666666666666553
No 477
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.04 E-value=2.3e+02 Score=30.68 Aligned_cols=154 Identities=10% Similarity=0.127 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCC-----------chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 039715 424 EVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAA-----------LEPGMQVHCLTVKANYDMDVVVANALIDMYAKC 492 (805)
Q Consensus 424 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 492 (805)
++++|.++.+.+ |....|...+....+.|. +++-.++++.+.+.| ...+...-||.|.+.
T Consensus 29 d~~eav~y~k~~------p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~ 99 (480)
T TIGR01503 29 DLQDAVDYHKSI------PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG---GADFLPSTIDAYTRQ 99 (480)
T ss_pred CHHHHHHHHHhC------CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc---CCCccceeeeccccc
Q ss_pred CCHHHHHHHhhhcCCC-------------CHhHHHHHHHHH-----HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 039715 493 GSITDARLVFDMMNDW-------------NEVSWNAMISGY-----SMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSA 554 (805)
Q Consensus 493 g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~-----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 554 (805)
+++++|...+++-.+. .+.....++... .+||.++ |..+++-+...|+....--..+.---
T Consensus 100 n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtpD-arlL~e~~~a~G~~a~EGG~ISYnlP 178 (480)
T TIGR01503 100 NRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTPD-ARLLAEIILAGGFTSFEGGGISYNIP 178 (480)
T ss_pred ccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCCc-HHHHHHHHHHcCCCccCCCcceeccc
Q ss_pred HHcCCCHHHHHHHHH---HHHHhc---CCCCChHHHHHH
Q 039715 555 CSNGGLLEQGEAYFK---SMVANY---GIEPCIEHYTSM 587 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~---~m~~~~---~~~p~~~~~~~l 587 (805)
|++.=-+++++..|+ ++...| |+..+.+.+.+|
T Consensus 179 YsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 179 YAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
No 478
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=21.81 E-value=1.4e+03 Score=27.08 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=29.4
Q ss_pred HcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccC
Q 039715 421 QLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLA 458 (805)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 458 (805)
+.++++.|+..+.+|.+.|..|..+.-..++.+....|
T Consensus 270 rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdig 307 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVG 307 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 46889999999999999998887766665555554544
No 479
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.66 E-value=3.7e+02 Score=24.04 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=28.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChH-HHHHHHHHHHhcCCHH
Q 039715 534 DLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIE-HYTSMVSLLGRAGHLD 598 (805)
Q Consensus 534 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~ 598 (805)
+.+.+.|+++...- ..++..+.+.+..-.|..+++.+.+. +..-+.. +|++| +.|...|-+.
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L-~~l~e~Glv~ 72 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTL-KLLEEAGLVH 72 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHH-HHHHHCCCEE
Confidence 34444555544322 12333444444445666666666643 2222332 33333 5566666444
No 480
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=21.62 E-value=7.5e+02 Score=25.00 Aligned_cols=65 Identities=9% Similarity=-0.036 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHH----HCCCCCChhHHHH-HHHHHhccCCchHHHHHHHHHHHhCCC
Q 039715 311 WSFMIARYAQTDLSIDAVELFCRMR----QAFVAPNQFTFVS-VLQACATMEGLDLGNQIHSLVVRVGLL 375 (805)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~ 375 (805)
|..+..-|++.++.+.+.++.++.. ..|.+.|...-.+ +.-.+....-+++-.+..+.+++.|..
T Consensus 118 ~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 118 DRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 4444455555555555444443332 2233433322111 111233333344555555555555543
No 481
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=21.50 E-value=2.9e+02 Score=27.36 Aligned_cols=17 Identities=6% Similarity=-0.005 Sum_probs=7.0
Q ss_pred HHcCCCHHHHHHHHHHH
Q 039715 555 CSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m 571 (805)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 33444444444444433
No 482
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=21.17 E-value=2.8e+02 Score=23.21 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=46.4
Q ss_pred hhhhhhccHHHHHHHhhcCCCCCCCEEEEeeeeccCcchhhHHHHhhhcCceEEEecC
Q 039715 731 ERYLWVHSEKLALAFALFKMPPSSPIRIIKNLRICVDCHTAIKIISKIVQREIIIRDV 788 (805)
Q Consensus 731 ~~~~~~hse~la~~~~~~~~~~~~~~~~~~~~~~c~~~h~~~k~~s~~~~~~~~~~d~ 788 (805)
+..|.-|.|.-++--=-.+..+|..+-|.--++-|..|..++.-.+.-.+-.|+-++.
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~ 101 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWP 101 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecC
Confidence 4557889998776633333445999888899999999999999999999988887764
No 483
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.12 E-value=4.8e+02 Score=21.77 Aligned_cols=84 Identities=8% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 039715 312 SFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKC 391 (805)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 391 (805)
..++..|...++.++|...+.++......++..........=.+...-+....++..+.+.+.........++-+.+...
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l 85 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDI 85 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhC
Q ss_pred CChH
Q 039715 392 GRME 395 (805)
Q Consensus 392 g~~~ 395 (805)
.+++
T Consensus 86 ~dl~ 89 (113)
T smart00544 86 EDLE 89 (113)
T ss_pred hhhh
No 484
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=20.92 E-value=6.1e+02 Score=29.55 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=39.1
Q ss_pred CCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHH
Q 039715 151 EGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFF 230 (805)
Q Consensus 151 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~ 230 (805)
.|+..+......+++.. .|++..+..++++++..| ....+...+-.+.... +-+....+++.+..++...++.++
T Consensus 194 Egi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g--~g~It~e~V~~lLG~~-d~~~If~LldAL~~~d~~~al~~l 268 (709)
T PRK08691 194 EKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALG--SGKVAENDVRQMIGAV-DKQYLYELLTGIINQDGAALLAKA 268 (709)
T ss_pred cCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHHccc-CHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45555555555555443 356666666666555443 1112222222222211 222344444444555555566666
Q ss_pred HHHHHCCCC
Q 039715 231 SQMRAVGFK 239 (805)
Q Consensus 231 ~~m~~~g~~ 239 (805)
++|...|+.
T Consensus 269 ~~L~~~G~d 277 (709)
T PRK08691 269 QEMAACAVG 277 (709)
T ss_pred HHHHHhCCC
Confidence 665555543
No 485
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=20.58 E-value=1.9e+02 Score=18.93 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILDF 642 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 642 (805)
++..|+......+++++|..-+++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666677778888888888877764
No 486
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=20.23 E-value=9.4e+02 Score=27.37 Aligned_cols=242 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCch----------HHH
Q 039715 294 SNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLD----------LGN 363 (805)
Q Consensus 294 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~----------~a~ 363 (805)
+-|....+..+......+..++.+.. .|+...++.....+.. |.-+-..+...+...|-++ ...
T Consensus 284 ~~a~~~~~~~~~~~~~~~e~~~~~i~-~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~~~~~~~~~~~~lr 357 (566)
T PF07575_consen 284 EYAQSCLEEFPPDSTNPLEQILLAIF-EGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLEDSEQEDFGGSSLR 357 (566)
T ss_dssp HHHHHHHHHS---TTSTTHHHHHHHH-TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HH
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHH-ccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCccccccccccccccHH
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHhcCC--hHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCC
Q 039715 364 QIHSLVVRVGLLSDVFVSNALMDVYAKCGR--MENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVP 441 (805)
Q Consensus 364 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~--~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 441 (805)
+.+-.--...+..+...|..-+..+..|++ ......++.+.+-++...-.-++..|.+.|..+.|.++.+.+-..-..
T Consensus 358 e~~ll~YA~~L~s~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~ 437 (566)
T PF07575_consen 358 EYLLLEYASSLMSHHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK 437 (566)
T ss_dssp HHHHHHHHHHHHT-TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_pred CChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHH-
Q 039715 442 ATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGY- 520 (805)
Q Consensus 442 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~- 520 (805)
..-|...+.-+.+.++......+-..+.+.....+......+++.....- +..+....|..+-.-|
T Consensus 438 --~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~-----------~~~~~L~fla~yreF~~ 504 (566)
T PF07575_consen 438 --EGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPM-----------LLSQRLSFLAKYREFYE 504 (566)
T ss_dssp --HHHHHHHHHHHH------------------------------------------------------------------
T ss_pred --CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchh-----------hhhhhhHHHHHHHHHHH
Q ss_pred -HhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 039715 521 -SMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSA 554 (805)
Q Consensus 521 -~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 554 (805)
.+.|+..+|.+.+-.+....+-|...-...+.++
T Consensus 505 ~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 505 LYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp -----------------------------------
T ss_pred HHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
No 487
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.00 E-value=1.3e+03 Score=26.06 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=62.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCCh-------------hhHHHH---HHHhhCCCCHHH
Q 039715 197 ALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNN-------------FTFAFV---LKACLGLDTIRV 260 (805)
Q Consensus 197 ~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------------~t~~~l---l~~~~~~~~~~~ 260 (805)
.+.+++-..|+.+-|..+.+ .++-.|++.....+.|.. .-|.++ +..+.+.|.+..
T Consensus 289 qva~~~r~qgD~e~aadLie--------R~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 289 QVADIFRFQGDREMAADLIE--------RGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred HHHHHHHHhcchhhHHHHHH--------HHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 34455666788877777665 677777776655444422 223333 345567778888
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHH-cCCChHHHHHHHhhC
Q 039715 261 AKSAHGCALKTCYEMDLYVAVALLDLYT-KSGEISNARRIFEEM 303 (805)
Q Consensus 261 a~~~~~~~~~~g~~~~~~~~~~li~~y~-~~g~~~~A~~~f~~~ 303 (805)
|.+.-..+.+....-|+.....+|+.|+ +..+++--+++|+..
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8888877777766667777777777665 455566666666554
Done!