Query 039715
Match_columns 805
No_of_seqs 920 out of 5067
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 21:44:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.9E-41 1.3E-45 386.7 38.0 474 99-668 61-571 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.9E-39 3E-43 367.1 36.4 481 90-659 83-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-25 1.5E-29 238.3 41.1 371 251-662 8-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 99.9 8.2E-25 2.8E-29 236.2 38.4 344 314-668 5-360 (388)
5 4g26_A Pentatricopeptide repea 99.9 4.3E-26 1.5E-30 250.6 21.8 184 410-594 27-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 5.6E-26 1.9E-30 249.7 19.6 211 326-558 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 7.6E-22 2.6E-26 221.4 35.2 430 220-656 19-492 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 8.2E-22 2.8E-26 217.2 31.2 322 310-662 28-378 (450)
9 2gw1_A Mitochondrial precursor 99.9 2.1E-21 7.1E-26 217.8 31.6 384 277-668 6-470 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 6.1E-20 2.1E-24 202.2 30.2 286 377-668 25-350 (450)
11 3fp2_A TPR repeat-containing p 99.9 1.1E-19 3.9E-24 204.9 32.8 257 392-652 216-501 (537)
12 3fp2_A TPR repeat-containing p 99.9 6.2E-20 2.1E-24 207.1 30.2 411 244-668 27-483 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 3.1E-16 1.1E-20 181.5 58.6 377 246-668 989-1376(1630)
14 1xi4_A Clathrin heavy chain; a 99.8 4E-15 1.4E-19 172.3 58.3 201 95-302 486-750 (1630)
15 3ieg_A DNAJ homolog subfamily 99.8 8.9E-18 3E-22 178.3 34.0 323 308-661 3-354 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 1.2E-17 4.2E-22 177.3 31.5 323 343-711 3-355 (359)
17 3hym_B Cell division cycle pro 99.8 1.3E-17 4.6E-22 174.8 28.1 285 375-663 19-321 (330)
18 1b89_A Protein (clathrin heavy 99.8 1.1E-17 3.7E-22 174.8 20.5 346 102-505 14-369 (449)
19 2xm6_A Protein corresponding t 99.8 1.1E-15 3.8E-20 169.9 38.0 365 276-659 38-452 (490)
20 3hym_B Cell division cycle pro 99.8 2E-16 6.8E-21 165.8 29.3 256 407-668 20-291 (330)
21 1b89_A Protein (clathrin heavy 99.8 1.4E-17 4.8E-22 174.0 18.3 286 288-607 14-308 (449)
22 1fch_A Peroxisomal targeting s 99.8 6.8E-17 2.3E-21 172.5 23.9 273 388-668 35-351 (368)
23 2ooe_A Cleavage stimulation fa 99.7 1.2E-14 4.1E-19 163.3 40.2 201 462-668 256-484 (530)
24 2ooe_A Cleavage stimulation fa 99.7 6.6E-15 2.3E-19 165.4 38.0 397 241-645 12-495 (530)
25 2xm6_A Protein corresponding t 99.7 1.6E-14 5.4E-19 160.6 40.3 342 306-668 37-424 (490)
26 4eqf_A PEX5-related protein; a 99.7 1.3E-16 4.5E-21 170.1 22.0 254 408-668 64-348 (365)
27 1fch_A Peroxisomal targeting s 99.7 3.7E-16 1.3E-20 166.7 23.5 266 348-641 69-358 (368)
28 3mkr_A Coatomer subunit epsilo 99.7 2.4E-15 8.3E-20 154.0 28.4 267 388-668 9-286 (291)
29 3cv0_A Peroxisome targeting si 99.7 2E-15 6.8E-20 157.9 23.9 253 410-668 22-307 (327)
30 4g1t_A Interferon-induced prot 99.7 8.3E-15 2.8E-19 162.1 29.6 380 242-654 51-471 (472)
31 3mkr_A Coatomer subunit epsilo 99.7 3.4E-15 1.1E-19 153.0 24.4 237 416-667 6-254 (291)
32 4eqf_A PEX5-related protein; a 99.7 7.5E-16 2.6E-20 164.2 19.7 259 348-639 70-353 (365)
33 4g1t_A Interferon-induced prot 99.7 3.6E-14 1.2E-18 156.9 31.5 260 393-668 153-451 (472)
34 3cv0_A Peroxisome targeting si 99.6 5E-14 1.7E-18 147.2 26.6 276 307-644 20-317 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.6 1.3E-16 4.6E-21 179.1 4.5 124 91-214 127-258 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.6 6.8E-16 2.3E-20 173.5 9.9 131 476-607 124-262 (1134)
37 2pl2_A Hypothetical conserved 99.6 1.4E-14 4.7E-19 141.7 17.5 188 476-668 2-206 (217)
38 3uq3_A Heat shock protein STI1 99.6 7E-14 2.4E-18 140.5 20.3 234 411-655 7-255 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.8E-14 3E-18 141.3 20.2 238 422-668 18-267 (275)
40 3uq3_A Heat shock protein STI1 99.6 8.4E-14 2.9E-18 139.9 19.7 210 445-668 6-228 (258)
41 3u4t_A TPR repeat-containing p 99.6 2.2E-13 7.5E-18 138.2 21.8 245 381-662 6-270 (272)
42 2h6f_A Protein farnesyltransfe 99.5 1.8E-13 6.1E-18 145.0 20.0 243 410-660 98-366 (382)
43 3e4b_A ALGK; tetratricopeptide 99.5 5.1E-13 1.7E-17 146.1 23.0 338 253-644 14-389 (452)
44 1ouv_A Conserved hypothetical 99.5 4.5E-12 1.5E-16 128.7 25.0 228 408-648 5-257 (273)
45 2q7f_A YRRB protein; TPR, prot 99.5 8.1E-13 2.8E-17 131.4 18.8 204 454-661 33-241 (243)
46 2ho1_A Type 4 fimbrial biogene 99.5 9.7E-12 3.3E-16 124.4 25.9 205 409-652 37-248 (252)
47 2pl2_A Hypothetical conserved 99.5 2.3E-12 7.8E-17 125.8 19.6 191 410-607 6-211 (217)
48 3e4b_A ALGK; tetratricopeptide 99.5 2.8E-12 9.6E-17 140.2 21.3 334 313-668 8-379 (452)
49 3sf4_A G-protein-signaling mod 99.4 1.1E-12 3.7E-17 141.6 17.4 257 380-667 49-367 (406)
50 2vq2_A PILW, putative fimbrial 99.4 1.5E-11 5.1E-16 120.3 23.6 207 408-653 7-222 (225)
51 3u4t_A TPR repeat-containing p 99.4 1.9E-11 6.3E-16 123.9 24.7 241 343-623 3-265 (272)
52 2ho1_A Type 4 fimbrial biogene 99.4 6.9E-12 2.4E-16 125.5 21.0 188 479-668 37-230 (252)
53 4abn_A Tetratricopeptide repea 99.4 1E-12 3.4E-17 144.7 16.1 187 477-668 100-313 (474)
54 1ouv_A Conserved hypothetical 99.4 2.6E-11 8.9E-16 123.0 25.3 214 443-668 5-243 (273)
55 2vq2_A PILW, putative fimbrial 99.4 1.2E-11 4.1E-16 121.0 21.6 190 477-668 6-203 (225)
56 2h6f_A Protein farnesyltransfe 99.4 1.5E-12 5.1E-17 137.9 16.0 209 446-661 99-323 (382)
57 1xnf_A Lipoprotein NLPI; TPR, 99.4 1E-11 3.6E-16 125.9 21.7 239 321-568 18-269 (275)
58 4a1s_A PINS, partner of inscut 99.4 2.4E-12 8.2E-17 139.3 17.6 222 447-668 89-364 (411)
59 3sf4_A G-protein-signaling mod 99.4 2.7E-12 9.3E-17 138.4 17.9 258 411-668 11-328 (406)
60 2q7f_A YRRB protein; TPR, prot 99.4 5E-12 1.7E-16 125.6 17.0 189 477-668 21-214 (243)
61 3ro2_A PINS homolog, G-protein 99.4 3.2E-12 1.1E-16 133.6 16.0 190 479-668 83-324 (338)
62 3vtx_A MAMA; tetratricopeptide 99.4 1.7E-11 5.7E-16 116.1 18.9 163 478-645 4-173 (184)
63 4e6h_A MRNA 3'-END-processing 99.4 2.6E-09 9E-14 120.6 39.8 417 226-649 51-577 (679)
64 4a1s_A PINS, partner of inscut 99.4 2.9E-12 1E-16 138.7 15.3 268 346-644 51-374 (411)
65 3vtx_A MAMA; tetratricopeptide 99.3 3.9E-11 1.3E-15 113.5 19.0 155 509-668 4-162 (184)
66 4gyw_A UDP-N-acetylglucosamine 99.3 7.2E-12 2.5E-16 143.3 15.9 155 509-668 8-166 (723)
67 2ond_A Cleavage stimulation fa 99.3 4.4E-10 1.5E-14 116.1 27.1 219 426-648 33-276 (308)
68 3ro2_A PINS homolog, G-protein 99.3 2.4E-11 8.2E-16 126.9 17.5 134 512-645 185-335 (338)
69 4e6h_A MRNA 3'-END-processing 99.3 5.2E-09 1.8E-13 118.2 35.4 225 363-591 329-584 (679)
70 3ulq_A Response regulator aspa 99.3 6.7E-11 2.3E-15 126.6 19.3 230 415-644 109-370 (383)
71 4i17_A Hypothetical protein; T 99.3 1.1E-10 3.9E-15 114.7 19.3 205 443-659 6-226 (228)
72 3nf1_A KLC 1, kinesin light ch 99.3 8.5E-12 2.9E-16 129.0 11.4 235 411-645 29-310 (311)
73 3ulq_A Response regulator aspa 99.2 1E-10 3.4E-15 125.3 17.0 218 450-668 109-360 (383)
74 3nf1_A KLC 1, kinesin light ch 99.2 1.9E-11 6.4E-16 126.4 9.9 224 445-668 28-299 (311)
75 4abn_A Tetratricopeptide repea 99.2 6.4E-11 2.2E-15 130.3 13.6 169 495-668 84-279 (474)
76 1hz4_A MALT regulatory protein 99.2 3.9E-09 1.3E-13 112.3 26.7 187 482-668 96-314 (373)
77 4i17_A Hypothetical protein; T 99.2 6.5E-11 2.2E-15 116.4 11.7 152 509-663 6-169 (228)
78 3as5_A MAMA; tetratricopeptide 99.2 1.3E-09 4.3E-14 102.6 20.1 168 479-649 8-180 (186)
79 3q15_A PSP28, response regulat 99.2 4.6E-09 1.6E-13 112.0 26.3 229 415-643 107-366 (378)
80 2ond_A Cleavage stimulation fa 99.2 4.1E-09 1.4E-13 108.8 25.0 178 395-575 81-271 (308)
81 3as5_A MAMA; tetratricopeptide 99.2 7.3E-10 2.5E-14 104.3 16.9 156 510-668 8-165 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.1 1.7E-10 6E-15 131.9 13.7 164 477-645 7-177 (723)
83 3q15_A PSP28, response regulat 99.1 1.1E-09 3.7E-14 116.9 18.2 218 450-668 107-357 (378)
84 1qqe_A Vesicular transport pro 99.1 1.6E-09 5.3E-14 111.0 16.8 174 480-655 78-282 (292)
85 1hz4_A MALT regulatory protein 99.1 9.1E-09 3.1E-13 109.4 23.2 230 412-644 56-324 (373)
86 1qqe_A Vesicular transport pro 99.1 2.6E-09 9E-14 109.3 17.7 195 459-668 32-261 (292)
87 3qky_A Outer membrane assembly 99.1 4.7E-09 1.6E-13 105.4 18.2 191 478-668 14-253 (261)
88 4ga2_A E3 SUMO-protein ligase 99.0 1.5E-10 5E-15 105.3 6.1 139 519-662 6-149 (150)
89 3edt_B KLC 2, kinesin light ch 99.0 2.4E-09 8.2E-14 108.5 14.1 153 420-572 12-196 (283)
90 3qky_A Outer membrane assembly 99.0 2E-08 7E-13 100.7 20.1 191 507-711 12-247 (261)
91 3edt_B KLC 2, kinesin light ch 99.0 1.6E-08 5.5E-13 102.3 18.8 223 390-642 13-281 (283)
92 2pzi_A Probable serine/threoni 98.9 6.1E-09 2.1E-13 119.8 15.4 167 490-662 402-583 (681)
93 3urz_A Uncharacterized protein 98.9 2.1E-08 7.2E-13 96.6 15.0 163 486-655 11-198 (208)
94 3mv2_B Coatomer subunit epsilo 98.9 1.7E-07 5.8E-12 93.9 21.6 240 389-650 24-290 (310)
95 3qou_A Protein YBBN; thioredox 98.9 1.6E-08 5.6E-13 102.9 14.6 165 499-668 106-276 (287)
96 3mv2_B Coatomer subunit epsilo 98.9 1.1E-07 3.7E-12 95.3 19.8 228 419-668 23-274 (310)
97 2fo7_A Synthetic consensus TPR 98.9 5.8E-08 2E-12 85.5 16.3 131 512-645 3-135 (136)
98 2ifu_A Gamma-SNAP; membrane fu 98.9 4.5E-08 1.5E-12 100.8 17.3 219 422-668 4-253 (307)
99 2pzi_A Probable serine/threoni 98.9 3.3E-08 1.1E-12 113.7 17.8 203 455-664 402-624 (681)
100 2yhc_A BAMD, UPF0169 lipoprote 98.8 9.6E-08 3.3E-12 93.3 17.0 170 479-668 4-205 (225)
101 4gco_A Protein STI-1; structur 98.8 3.2E-08 1.1E-12 86.5 11.0 114 541-657 8-125 (126)
102 4ga2_A E3 SUMO-protein ligase 98.8 4.6E-09 1.6E-13 95.3 5.3 114 552-668 4-120 (150)
103 2vsy_A XCC0866; transferase, g 98.7 1.2E-07 4E-12 107.2 17.0 158 492-654 2-169 (568)
104 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.6E-07 5.4E-12 91.8 15.5 185 444-649 4-220 (225)
105 2uy1_A Cleavage stimulation fa 98.7 7.8E-06 2.7E-10 89.6 30.2 125 410-538 287-412 (493)
106 3gyz_A Chaperone protein IPGC; 98.7 4.6E-08 1.6E-12 88.2 10.4 93 576-668 30-125 (151)
107 3rjv_A Putative SEL1 repeat pr 98.7 4.2E-07 1.4E-11 87.7 17.8 142 509-659 17-174 (212)
108 2fo7_A Synthetic consensus TPR 98.7 3.1E-07 1.1E-11 80.6 15.5 128 411-572 3-130 (136)
109 2r5s_A Uncharacterized protein 98.7 7.6E-08 2.6E-12 89.9 11.8 150 482-668 9-165 (176)
110 2vsy_A XCC0866; transferase, g 98.7 1.2E-07 4E-12 107.1 14.8 141 523-668 2-149 (568)
111 3rjv_A Putative SEL1 repeat pr 98.7 6.9E-07 2.4E-11 86.1 18.1 173 462-644 4-199 (212)
112 2r5s_A Uncharacterized protein 98.7 1.5E-07 5.3E-12 87.8 13.0 118 548-668 9-129 (176)
113 4gco_A Protein STI-1; structur 98.7 2.9E-08 1E-12 86.8 7.0 93 576-668 7-102 (126)
114 2ifu_A Gamma-SNAP; membrane fu 98.7 1.2E-07 4E-12 97.6 12.7 191 456-668 3-216 (307)
115 2uy1_A Cleavage stimulation fa 98.7 9.6E-06 3.3E-10 88.8 28.2 346 256-641 28-412 (493)
116 3dra_A Protein farnesyltransfe 98.6 6.5E-06 2.2E-10 83.3 24.4 224 425-655 49-301 (306)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.3E-06 4.3E-11 84.2 17.9 146 482-648 9-156 (213)
118 3urz_A Uncharacterized protein 98.6 6.5E-07 2.2E-11 86.1 15.7 186 412-622 7-199 (208)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.3E-06 4.3E-11 84.2 17.6 115 549-668 10-142 (213)
120 2qfc_A PLCR protein; TPR, HTH, 98.6 6.5E-07 2.2E-11 91.4 16.3 156 511-666 76-255 (293)
121 2vgx_A Chaperone SYCD; alterna 98.6 8.1E-08 2.8E-12 86.7 8.0 93 576-668 15-110 (148)
122 3u3w_A Transcriptional activat 98.6 3.1E-06 1E-10 86.3 20.9 153 516-668 81-258 (293)
123 3qou_A Protein YBBN; thioredox 98.6 1.5E-06 5E-11 88.4 18.0 154 482-640 120-282 (287)
124 2c2l_A CHIP, carboxy terminus 98.6 7.6E-08 2.6E-12 97.6 8.4 183 478-668 3-191 (281)
125 1na0_A Designed protein CTPR3; 98.6 1E-06 3.5E-11 76.1 14.3 113 547-661 11-125 (125)
126 2lni_A Stress-induced-phosphop 98.6 6.1E-07 2.1E-11 78.7 12.7 113 547-662 18-133 (133)
127 3u3w_A Transcriptional activat 98.6 7.3E-06 2.5E-10 83.5 22.6 159 484-642 80-266 (293)
128 4f3v_A ESX-1 secretion system 98.5 3.5E-07 1.2E-11 90.4 11.5 137 514-655 106-249 (282)
129 3gyz_A Chaperone protein IPGC; 98.5 2.7E-07 9.4E-12 83.1 9.7 98 547-647 38-138 (151)
130 2vyi_A SGTA protein; chaperone 98.5 1.1E-06 3.6E-11 76.7 13.4 116 547-664 14-131 (131)
131 3dra_A Protein farnesyltransfe 98.5 7.3E-06 2.5E-10 82.9 20.5 204 459-668 48-279 (306)
132 2vgx_A Chaperone SYCD; alterna 98.5 4.8E-07 1.6E-11 81.5 9.5 107 547-656 23-132 (148)
133 1p5q_A FKBP52, FK506-binding p 98.4 6.1E-07 2.1E-11 93.5 10.6 138 509-668 146-285 (336)
134 2xcb_A PCRH, regulatory protei 98.4 1.6E-06 5.5E-11 77.4 12.0 88 581-668 18-107 (142)
135 2qfc_A PLCR protein; TPR, HTH, 98.4 2.5E-06 8.5E-11 87.0 14.9 162 481-642 77-266 (293)
136 3upv_A Heat shock protein STI1 98.4 3.3E-07 1.1E-11 80.0 7.1 86 583-668 6-93 (126)
137 1a17_A Serine/threonine protei 98.4 2.7E-06 9.1E-11 78.0 13.5 118 548-668 16-138 (166)
138 2fbn_A 70 kDa peptidylprolyl i 98.4 8.8E-07 3E-11 84.3 9.9 163 485-668 10-177 (198)
139 3gw4_A Uncharacterized protein 98.4 2.2E-06 7.6E-11 81.6 12.7 153 491-643 4-177 (203)
140 4f3v_A ESX-1 secretion system 98.4 2.1E-06 7.1E-11 84.9 11.9 173 491-668 18-229 (282)
141 2e2e_A Formate-dependent nitri 98.4 3.5E-06 1.2E-10 78.4 13.0 129 521-654 21-156 (177)
142 2xcb_A PCRH, regulatory protei 98.4 7.4E-07 2.5E-11 79.7 7.9 112 547-661 20-134 (142)
143 2dba_A Smooth muscle cell asso 98.3 6.1E-06 2.1E-10 73.8 13.8 111 547-660 30-146 (148)
144 1elw_A TPR1-domain of HOP; HOP 98.3 9.1E-06 3.1E-10 69.1 13.9 108 547-657 6-116 (118)
145 3gw4_A Uncharacterized protein 98.3 9.7E-06 3.3E-10 77.1 15.4 155 478-644 25-198 (203)
146 3sz7_A HSC70 cochaperone (SGT) 98.3 4.7E-06 1.6E-10 76.4 11.8 107 547-656 13-122 (164)
147 2hr2_A Hypothetical protein; a 98.3 8.1E-07 2.8E-11 79.1 5.9 73 583-655 59-144 (159)
148 1a17_A Serine/threonine protei 98.3 1.4E-05 4.9E-10 73.0 14.5 126 511-641 14-145 (166)
149 1hxi_A PEX5, peroxisome target 98.3 2E-06 6.7E-11 74.3 8.0 85 584-668 20-106 (121)
150 3upv_A Heat shock protein STI1 98.3 9.6E-06 3.3E-10 70.4 12.4 109 548-659 7-124 (126)
151 4gcn_A Protein STI-1; structur 98.2 3.4E-06 1.2E-10 73.6 9.0 87 582-668 9-104 (127)
152 3q7a_A Farnesyltransferase alp 98.2 0.00032 1.1E-08 71.7 24.6 230 418-654 63-344 (349)
153 1wao_1 Serine/threonine protei 98.2 8.9E-07 3E-11 96.9 5.7 113 520-637 16-134 (477)
154 3dss_A Geranylgeranyl transfer 98.2 0.00011 3.8E-09 74.7 20.7 191 460-657 90-319 (331)
155 3q49_B STIP1 homology and U bo 98.2 7E-06 2.4E-10 72.4 10.6 88 581-668 9-98 (137)
156 3q49_B STIP1 homology and U bo 98.2 1.1E-05 3.8E-10 71.1 11.9 115 544-661 8-130 (137)
157 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1E-05 3.5E-10 88.0 14.0 138 509-668 267-406 (457)
158 1elw_A TPR1-domain of HOP; HOP 98.2 4.1E-06 1.4E-10 71.3 8.8 89 580-668 3-93 (118)
159 3sz7_A HSC70 cochaperone (SGT) 98.2 4.8E-06 1.6E-10 76.4 9.7 89 580-668 10-100 (164)
160 4gcn_A Protein STI-1; structur 98.2 1.2E-05 4.3E-10 69.9 11.5 110 511-651 9-120 (127)
161 1dce_A Protein (RAB geranylger 98.2 3.7E-05 1.3E-09 85.6 17.6 169 492-665 42-244 (567)
162 3rkv_A Putative peptidylprolyl 98.2 2.4E-06 8.4E-11 78.2 6.7 56 613-668 63-118 (162)
163 2c2l_A CHIP, carboxy terminus 98.1 3.2E-05 1.1E-09 78.1 15.3 181 454-644 14-201 (281)
164 1na0_A Designed protein CTPR3; 98.1 6.8E-05 2.3E-09 64.2 15.3 92 512-606 11-102 (125)
165 1p5q_A FKBP52, FK506-binding p 98.1 1.3E-05 4.3E-10 83.4 12.4 138 457-600 126-283 (336)
166 2kck_A TPR repeat; tetratricop 98.1 6.1E-06 2.1E-10 69.5 8.2 85 584-668 9-98 (112)
167 1ihg_A Cyclophilin 40; ppiase 98.1 9.6E-06 3.3E-10 85.4 11.4 137 510-668 223-362 (370)
168 2hr2_A Hypothetical protein; a 98.1 5.2E-06 1.8E-10 73.9 7.8 56 613-668 57-123 (159)
169 2e2e_A Formate-dependent nitri 98.1 2.5E-05 8.7E-10 72.4 12.6 116 455-573 21-143 (177)
170 2dba_A Smooth muscle cell asso 98.1 1.9E-05 6.6E-10 70.4 11.0 89 580-668 27-120 (148)
171 1wao_1 Serine/threonine protei 98.1 6.4E-06 2.2E-10 90.1 9.2 113 553-668 14-131 (477)
172 1hxi_A PEX5, peroxisome target 98.1 1.6E-05 5.3E-10 68.6 9.6 96 549-647 21-119 (121)
173 3rkv_A Putative peptidylprolyl 98.1 8.6E-06 2.9E-10 74.5 8.4 139 510-668 11-153 (162)
174 1elr_A TPR2A-domain of HOP; HO 98.1 4.2E-05 1.5E-09 66.3 12.5 117 512-661 6-126 (131)
175 2xev_A YBGF; tetratricopeptide 98.1 2.7E-05 9.1E-10 67.7 11.1 109 553-661 10-124 (129)
176 2l6j_A TPR repeat-containing p 98.1 8.7E-06 3E-10 68.6 7.6 89 580-668 3-99 (111)
177 2lni_A Stress-induced-phosphop 98.0 7.5E-05 2.6E-09 65.0 13.9 91 511-606 17-109 (133)
178 2vyi_A SGTA protein; chaperone 98.0 8E-05 2.7E-09 64.4 13.7 114 510-628 12-129 (131)
179 3k9i_A BH0479 protein; putativ 98.0 5.4E-06 1.8E-10 71.0 5.8 107 558-665 3-113 (117)
180 4b4t_Q 26S proteasome regulato 98.0 2.1E-05 7.3E-10 85.0 11.9 181 488-668 13-237 (434)
181 2if4_A ATFKBP42; FKBP-like, al 98.0 1.2E-05 4.3E-10 83.5 9.1 125 512-656 181-307 (338)
182 3q7a_A Farnesyltransferase alp 98.0 0.00019 6.5E-09 73.3 17.5 205 458-668 68-323 (349)
183 3ro3_A PINS homolog, G-protein 98.0 2.9E-05 1E-09 70.3 10.6 131 513-643 12-159 (164)
184 2kck_A TPR repeat; tetratricop 98.0 4.9E-05 1.7E-09 63.7 11.0 98 548-647 9-111 (112)
185 3dss_A Geranylgeranyl transfer 98.0 0.00064 2.2E-08 69.1 20.9 155 495-654 90-279 (331)
186 4b4t_Q 26S proteasome regulato 97.9 0.00012 4.1E-09 79.0 15.8 125 483-607 99-242 (434)
187 3k9i_A BH0479 protein; putativ 97.9 4.8E-06 1.7E-10 71.3 3.7 76 593-668 2-82 (117)
188 2fbn_A 70 kDa peptidylprolyl i 97.9 2.2E-05 7.5E-10 74.5 8.5 87 582-668 39-143 (198)
189 1na3_A Designed protein CTPR2; 97.9 3.8E-05 1.3E-09 61.8 8.8 81 581-661 9-91 (91)
190 2xev_A YBGF; tetratricopeptide 97.9 2.5E-05 8.5E-10 67.9 7.7 84 585-668 6-97 (129)
191 3ro3_A PINS homolog, G-protein 97.9 9.6E-05 3.3E-09 66.7 11.5 128 480-607 10-155 (164)
192 1elr_A TPR2A-domain of HOP; HO 97.9 4.5E-05 1.5E-09 66.1 8.8 108 480-590 5-121 (131)
193 3n71_A Histone lysine methyltr 97.8 3.6E-05 1.2E-09 83.5 9.0 86 615-710 353-449 (490)
194 3n71_A Histone lysine methyltr 97.8 0.00012 4.1E-09 79.4 12.7 114 555-668 319-456 (490)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 5.6E-05 1.9E-09 82.2 9.9 56 613-668 317-372 (457)
196 2if4_A ATFKBP42; FKBP-like, al 97.7 5.5E-05 1.9E-09 78.6 8.0 105 547-668 181-285 (338)
197 3qwp_A SET and MYND domain-con 97.7 6.6E-05 2.2E-09 80.2 8.6 21 690-710 407-427 (429)
198 3ma5_A Tetratricopeptide repea 97.7 0.00012 4E-09 60.4 7.7 57 612-668 6-62 (100)
199 1zu2_A Mitochondrial import re 97.6 3E-05 1E-09 68.9 4.1 56 598-653 63-131 (158)
200 3qww_A SET and MYND domain-con 97.6 5.7E-05 1.9E-09 80.5 5.9 85 557-641 310-410 (433)
201 1ihg_A Cyclophilin 40; ppiase 97.6 0.00031 1.1E-08 73.7 11.5 116 481-601 225-361 (370)
202 2l6j_A TPR repeat-containing p 97.5 0.00015 5.1E-09 60.8 6.6 95 509-608 3-105 (111)
203 2kat_A Uncharacterized protein 97.5 0.00017 5.8E-09 61.2 6.3 57 612-668 18-74 (115)
204 1zu2_A Mitochondrial import re 97.4 6.1E-05 2.1E-09 66.9 3.4 76 593-668 14-112 (158)
205 1klx_A Cysteine rich protein B 97.4 0.0012 4.3E-08 57.9 11.6 112 524-644 9-128 (138)
206 3qww_A SET and MYND domain-con 97.4 0.00067 2.3E-08 72.3 11.3 86 522-607 310-408 (433)
207 2kat_A Uncharacterized protein 97.4 0.00061 2.1E-08 57.6 8.8 98 564-664 4-106 (115)
208 3qwp_A SET and MYND domain-con 97.3 0.0014 4.8E-08 69.9 12.2 99 555-653 297-416 (429)
209 1dce_A Protein (RAB geranylger 97.3 0.0021 7.2E-08 71.4 14.0 133 523-660 42-191 (567)
210 3ly7_A Transcriptional activat 97.2 0.003 1E-07 64.4 13.3 143 508-653 192-349 (372)
211 1klx_A Cysteine rich protein B 97.1 0.0065 2.2E-07 53.2 12.4 109 424-540 10-127 (138)
212 3bee_A Putative YFRE protein; 97.1 0.003 1E-07 50.8 9.3 58 611-668 4-64 (93)
213 1na3_A Designed protein CTPR2; 97.0 0.00052 1.8E-08 54.9 4.6 56 613-668 9-64 (91)
214 2kc7_A BFR218_protein; tetratr 97.0 0.0024 8.3E-08 52.0 8.7 73 587-659 6-83 (99)
215 3ma5_A Tetratricopeptide repea 96.9 0.0041 1.4E-07 50.9 9.1 63 509-573 6-69 (100)
216 3lvg_A Clathrin heavy chain 1; 96.6 0.0005 1.7E-08 71.1 1.6 418 123-603 55-534 (624)
217 2v5f_A Prolyl 4-hydroxylase su 96.6 0.0096 3.3E-07 49.1 9.2 74 581-654 5-87 (104)
218 3mkq_A Coatomer beta'-subunit; 96.4 0.19 6.5E-06 58.7 22.1 128 347-503 633-760 (814)
219 3mkq_A Coatomer beta'-subunit; 96.3 0.085 2.9E-06 61.7 18.7 101 489-607 662-762 (814)
220 2kc7_A BFR218_protein; tetratr 96.2 0.006 2E-07 49.5 5.7 50 619-668 6-56 (99)
221 3lvg_A Clathrin heavy chain 1; 96.2 0.027 9.2E-07 58.6 11.3 174 20-216 60-253 (624)
222 1pc2_A Mitochondria fission pr 95.9 0.028 9.6E-07 49.2 8.6 77 579-655 30-113 (152)
223 3ly7_A Transcriptional activat 95.8 0.11 3.9E-06 52.9 13.7 73 507-584 274-346 (372)
224 3bee_A Putative YFRE protein; 95.7 0.08 2.7E-06 42.3 9.9 69 579-647 4-77 (93)
225 4ady_A RPN2, 26S proteasome re 95.2 6.1 0.00021 45.5 32.3 168 418-592 499-672 (963)
226 3mkq_B Coatomer subunit alpha; 94.8 1.1 3.8E-05 40.2 15.3 101 388-505 15-115 (177)
227 1pc2_A Mitochondria fission pr 94.6 0.028 9.4E-07 49.2 4.2 92 610-716 29-125 (152)
228 3mkq_B Coatomer subunit alpha; 94.6 1 3.5E-05 40.3 14.5 128 286-435 14-141 (177)
229 4gns_B Protein CSD3, chitin bi 94.1 0.13 4.3E-06 58.1 9.3 49 620-668 344-392 (754)
230 3u64_A Protein TP_0956; tetrat 93.9 0.087 3E-06 51.4 6.5 55 614-668 200-261 (301)
231 1nzn_A CGI-135 protein, fissio 93.6 0.56 1.9E-05 39.3 10.0 77 579-655 33-116 (126)
232 1wy6_A Hypothetical protein ST 93.5 2.6 8.8E-05 35.5 13.3 73 594-668 74-146 (172)
233 3u64_A Protein TP_0956; tetrat 93.4 0.57 1.9E-05 45.7 11.1 110 493-607 135-266 (301)
234 2v5f_A Prolyl 4-hydroxylase su 91.6 0.78 2.7E-05 37.2 8.5 27 512-538 48-74 (104)
235 1qsa_A Protein (soluble lytic 90.7 23 0.0008 39.0 27.8 259 379-654 73-356 (618)
236 1wy6_A Hypothetical protein ST 90.6 7 0.00024 33.0 12.9 85 390-476 73-157 (172)
237 2wpv_A GET4, UPF0363 protein Y 90.2 15 0.00053 36.3 21.0 167 382-574 37-217 (312)
238 3ffl_A Anaphase-promoting comp 88.7 2.3 7.9E-05 37.4 9.2 29 581-609 122-150 (167)
239 4ady_A RPN2, 26S proteasome re 88.2 43 0.0015 38.7 36.5 249 387-640 383-656 (963)
240 4b4t_P 26S proteasome regulato 87.4 31 0.0011 36.3 20.5 96 512-607 139-244 (445)
241 4h7y_A Dual specificity protei 86.8 14 0.00047 31.9 12.5 97 406-504 10-119 (161)
242 2p58_C Putative type III secre 86.6 9.5 0.00032 30.0 10.2 87 357-448 21-107 (116)
243 3lpz_A GET4 (YOR164C homolog); 86.5 28 0.00095 34.8 19.7 125 197-321 40-180 (336)
244 2wpv_A GET4, UPF0363 protein Y 86.0 28 0.00097 34.4 20.0 132 280-422 36-178 (312)
245 3lpz_A GET4 (YOR164C homolog); 85.7 30 0.001 34.5 22.3 165 383-573 40-215 (336)
246 2uwj_G Type III export protein 85.4 9 0.00031 30.1 9.5 87 357-448 20-106 (115)
247 1y8m_A FIS1; mitochondria, unk 84.8 14 0.00048 31.5 11.6 76 579-654 37-118 (144)
248 4h7y_A Dual specificity protei 84.8 7.3 0.00025 33.6 9.8 105 507-646 10-127 (161)
249 2uwj_G Type III export protein 84.2 9.1 0.00031 30.1 9.1 86 460-550 22-107 (115)
250 2p58_C Putative type III secre 83.8 9.7 0.00033 30.0 9.1 85 460-549 23-107 (116)
251 1y8m_A FIS1; mitochondria, unk 83.3 13 0.00044 31.8 10.7 92 610-716 36-131 (144)
252 3o48_A Mitochondria fission 1 83.0 15 0.00053 30.8 10.9 40 614-653 79-118 (134)
253 1nzn_A CGI-135 protein, fissio 82.4 18 0.00061 30.2 11.2 66 477-544 33-106 (126)
254 3txn_A 26S proteasome regulato 81.3 49 0.0017 34.0 16.6 55 551-605 105-163 (394)
255 2ff4_A Probable regulatory pro 81.2 9.3 0.00032 39.6 11.4 69 514-584 175-248 (388)
256 4gns_B Protein CSD3, chitin bi 79.4 28 0.00096 39.2 15.0 135 161-304 252-398 (754)
257 2qx5_A Nucleoporin NIC96; mRNA 79.1 40 0.0014 37.3 15.9 81 415-506 300-383 (661)
258 1zbp_A Hypothetical protein VP 77.4 21 0.00073 34.2 11.3 119 519-649 6-136 (273)
259 1v54_E Cytochrome C oxidase po 76.3 15 0.00051 29.1 8.1 63 525-589 25-87 (109)
260 2qx5_A Nucleoporin NIC96; mRNA 73.8 1E+02 0.0035 34.1 17.3 22 591-612 548-569 (661)
261 4fhn_B Nucleoporin NUP120; pro 73.7 51 0.0018 39.6 16.4 166 381-564 815-990 (1139)
262 2ff4_A Probable regulatory pro 72.7 11 0.00037 39.1 9.0 67 481-547 173-247 (388)
263 4fhn_B Nucleoporin NUP120; pro 72.6 63 0.0021 38.9 16.9 146 447-600 815-990 (1139)
264 4b4t_P 26S proteasome regulato 71.8 1E+02 0.0035 32.3 28.1 150 220-369 29-203 (445)
265 3ffl_A Anaphase-promoting comp 71.6 38 0.0013 29.8 10.5 110 384-506 26-149 (167)
266 3o48_A Mitochondria fission 1 68.1 15 0.00051 30.9 6.9 59 610-668 37-99 (134)
267 1v54_E Cytochrome C oxidase po 67.0 23 0.00077 28.1 7.2 59 326-385 28-86 (109)
268 2y69_E Cytochrome C oxidase su 65.5 35 0.0012 28.7 8.4 61 527-589 70-130 (152)
269 1wdy_A 2-5A-dependent ribonucl 60.9 1.1E+02 0.0039 28.9 13.7 47 457-503 192-240 (285)
270 1wdy_A 2-5A-dependent ribonucl 60.4 1E+02 0.0034 29.3 13.1 209 61-302 7-241 (285)
271 1qsa_A Protein (soluble lytic 58.9 2.1E+02 0.0073 31.4 35.6 367 92-479 73-485 (618)
272 4b4t_R RPN7, 26S proteasome re 53.6 49 0.0017 34.6 9.8 96 481-576 133-239 (429)
273 1zbp_A Hypothetical protein VP 53.0 16 0.00053 35.1 5.0 61 589-649 5-67 (273)
274 2y69_E Cytochrome C oxidase su 51.2 59 0.002 27.3 7.4 59 326-385 71-129 (152)
275 4b4t_R RPN7, 26S proteasome re 50.6 39 0.0013 35.3 8.4 96 512-607 133-234 (429)
276 3eiq_C Programmed cell death p 49.3 95 0.0032 31.3 10.4 65 280-344 220-289 (358)
277 2l0z_A Glycoprotein G2; zinc-b 47.7 5.6 0.00019 25.0 0.7 17 788-804 12-29 (42)
278 3ltj_A Alpharep-4; protein eng 45.0 1.7E+02 0.0058 26.1 19.6 153 275-436 26-178 (201)
279 3jxi_A Vanilloid receptor-rela 43.7 43 0.0015 31.8 7.0 51 166-216 11-70 (260)
280 3eiq_C Programmed cell death p 43.3 1.3E+02 0.0045 30.3 10.4 63 482-544 220-287 (358)
281 3ltm_A Alpha-REP4; protein eng 41.8 1.9E+02 0.0067 25.9 18.9 153 275-436 31-183 (211)
282 2zu6_B Programmed cell death p 41.6 1.1E+02 0.0038 30.0 9.4 63 281-343 170-237 (307)
283 1n11_A Ankyrin; clathrin, BAND 41.4 1.4E+02 0.0049 30.7 11.3 22 97-118 17-38 (437)
284 1k1a_A B-cell lymphoma 3-encod 41.1 1.4E+02 0.0049 27.4 10.2 141 63-209 13-164 (241)
285 2nsz_A Programmed cell death p 40.2 1E+02 0.0035 25.7 7.7 63 381-443 10-77 (129)
286 2d2s_A Exocyst complex compone 38.5 1.8E+02 0.006 27.3 9.9 87 129-218 25-117 (235)
287 4b4t_S RPN3, 26S proteasome re 37.0 82 0.0028 33.5 8.0 25 583-607 233-257 (523)
288 2lo3_A SAGA-associated factor 36.3 15 0.00051 23.3 1.3 11 761-771 16-26 (44)
289 1ya0_A SMG-7 transcript varian 35.8 59 0.002 34.7 6.8 77 583-659 154-232 (497)
290 2zu6_B Programmed cell death p 35.5 3.3E+02 0.011 26.7 14.5 26 382-407 7-32 (307)
291 4g8k_A 2-5A-dependent ribonucl 35.5 3.2E+02 0.011 26.6 15.7 270 60-377 26-328 (337)
292 1k1a_A B-cell lymphoma 3-encod 34.7 1.7E+02 0.006 26.7 9.7 21 319-339 17-37 (241)
293 2nsz_A Programmed cell death p 34.5 2E+02 0.0068 23.9 9.0 62 482-543 10-76 (129)
294 2ion_A PDCD4, programmed cell 32.3 94 0.0032 26.8 6.4 63 381-443 12-79 (152)
295 3pvs_A Replication-associated 31.5 4.6E+02 0.016 27.2 13.1 95 155-251 192-299 (447)
296 2rfa_A Transient receptor pote 30.3 2.2E+02 0.0075 25.9 9.5 43 232-274 139-183 (232)
297 3mv2_A Coatomer subunit alpha; 30.0 4.1E+02 0.014 26.1 13.2 42 604-645 196-239 (325)
298 1n11_A Ankyrin; clathrin, BAND 29.8 2.5E+02 0.0085 28.8 10.8 332 63-445 18-373 (437)
299 3kea_A K1L; tropism, ANK repea 29.6 2.5E+02 0.0087 26.8 10.1 11 435-445 214-224 (285)
300 3esl_A Checkpoint serine/threo 29.4 2E+02 0.0068 26.1 8.1 50 359-408 95-145 (202)
301 3esl_A Checkpoint serine/threo 28.4 3.4E+02 0.011 24.6 11.2 66 512-579 82-148 (202)
302 3txn_A 26S proteasome regulato 28.2 4.9E+02 0.017 26.5 23.6 93 483-575 103-211 (394)
303 2d2s_A Exocyst complex compone 28.0 1.5E+02 0.0053 27.7 7.6 28 578-605 88-115 (235)
304 2ion_A PDCD4, programmed cell 27.5 2E+02 0.0068 24.7 7.6 62 482-543 12-78 (152)
305 2r9g_A AAA ATPase, central reg 27.5 3.5E+02 0.012 24.5 9.6 65 309-374 12-84 (204)
306 3ltj_A Alpharep-4; protein eng 27.1 3.3E+02 0.011 24.0 21.1 48 377-424 27-74 (201)
307 3kea_A K1L; tropism, ANK repea 26.2 2.7E+02 0.0092 26.6 9.6 20 385-404 133-152 (285)
308 2hgo_A CASSIICOLIN; toxin, dis 25.5 14 0.00047 20.1 -0.1 13 793-805 8-22 (27)
309 2k0q_A Putative uncharacterize 25.4 20 0.0007 25.7 0.7 22 781-802 8-29 (74)
310 4b4t_S RPN3, 26S proteasome re 25.3 3.7E+02 0.013 28.5 10.6 61 378-438 231-299 (523)
311 3bqo_A Telomeric repeat-bindin 24.7 3.6E+02 0.012 24.3 8.6 60 597-656 94-160 (211)
312 4a1g_A Mitotic checkpoint seri 24.2 1.1E+02 0.0037 26.4 5.2 63 460-522 81-144 (152)
313 3hra_A Ankyrin repeat family p 24.1 2.6E+02 0.009 24.5 8.6 18 287-304 12-29 (201)
314 2etb_A Transient receptor pote 24.0 1E+02 0.0036 28.9 5.9 28 164-191 6-33 (256)
315 3kae_A CDC27, possible protein 23.6 3.7E+02 0.013 23.7 8.2 79 587-668 39-135 (242)
316 1bd8_A P19INK4D CDK4/6 inhibit 23.3 1.4E+02 0.0048 25.1 6.2 108 63-180 6-121 (156)
317 2fe3_A Peroxide operon regulat 23.1 1.7E+02 0.0057 24.9 6.4 41 313-353 26-66 (145)
318 3bge_A Predicted ATPase; struc 22.7 2.9E+02 0.01 24.9 7.8 46 312-357 8-56 (201)
319 3eu9_A Huntingtin-interacting 22.3 3.1E+02 0.011 24.7 9.0 17 286-302 48-64 (240)
320 3aji_A 26S proteasome non-ATPa 22.1 3.7E+02 0.013 24.2 9.4 19 98-116 10-28 (231)
321 2rfa_A Transient receptor pote 22.0 4.1E+02 0.014 23.9 9.7 16 287-302 10-25 (232)
322 3ltm_A Alpha-REP4; protein eng 21.8 4.2E+02 0.014 23.5 20.8 10 384-393 39-48 (211)
323 3hra_A Ankyrin repeat family p 21.0 3.9E+02 0.013 23.3 9.1 54 99-157 10-67 (201)
324 2r9g_A AAA ATPase, central reg 20.5 4.8E+02 0.016 23.6 10.3 58 215-273 22-84 (204)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-41 Score=386.70 Aligned_cols=474 Identities=10% Similarity=-0.013 Sum_probs=379.0
Q ss_pred HHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhh
Q 039715 99 NVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPC 178 (805)
Q Consensus 99 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 178 (805)
..+.+.|.+..++..|+.++.+++..|+.++.+|.+.|++++|+.+|++|.. ..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~------------------------ 114 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--IT------------------------ 114 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH------------------------
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hC------------------------
Confidence 3456788888999999999989999999999999999999999999999975 22
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCH
Q 039715 179 VFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTI 258 (805)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 258 (805)
|+..+++.++.+|.+.|++++|..+|+++ .
T Consensus 115 -----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------~------------------------ 144 (597)
T 2xpi_A 115 -----------GNPNDAFWLAQVYCCTGDYARAKCLLTKE---------------D------------------------ 144 (597)
T ss_dssp -----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT---------------C------------------------
T ss_pred -----------CCchHHHHHHHHHHHcCcHHHHHHHHHHH---------------h------------------------
Confidence 34455566777777777777777666633 1
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCC-------------------CcccHHHHHHHHH
Q 039715 259 RVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKK-------------------DVIPWSFMIARYA 319 (805)
Q Consensus 259 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~ 319 (805)
..+++..+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.
T Consensus 145 -------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (597)
T 2xpi_A 145 -------------LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT 211 (597)
T ss_dssp -------------GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH
T ss_pred -------------ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH
Confidence 02456777888888888999999999999854333 3678999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChh-HHHHHHHHHhccCCchH--HHHH-HHHHHHhCCCccHHHHHHHHHHHHhcCChH
Q 039715 320 QTDLSIDAVELFCRMRQAFVAPNQF-TFVSVLQACATMEGLDL--GNQI-HSLVVRVGLLSDVFVSNALMDVYAKCGRME 395 (805)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 395 (805)
+.|++++|+++|++|.+.+ |+.. .+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|+++
T Consensus 212 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 289 (597)
T 2xpi_A 212 NLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR 289 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHH
Confidence 9999999999999998853 4433 34444333322222111 1111 344444444555667888899999999999
Q ss_pred HHHHHHhcCCC--CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHc
Q 039715 396 NSVELFAESPK--RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKA 473 (805)
Q Consensus 396 ~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 473 (805)
+|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|++++|.+++..+.+.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 99999999987 789999999999999999999999999999865 346778999999999999999999999999976
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 039715 474 NYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVG 550 (805)
Q Consensus 474 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 550 (805)
. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..
T Consensus 369 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 446 (597)
T 2xpi_A 369 H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLF 446 (597)
T ss_dssp C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHH
Confidence 5 5678899999999999999999999999886 3478899999999999999999999999999853 347789999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC--HHHHHHHHH
Q 039715 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPS--VMIWRALLG 621 (805)
Q Consensus 551 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~--~~~~~~l~~ 621 (805)
++.+|.+.|++++|.++|+++.+. ...+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 999999999999999999999864 2336889999999999999999999999977 45777 789999999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 622 ACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 622 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|..+|++++|+..++++++++|+++.+|..++++|...|+|++|.+
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999987
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.9e-39 Score=367.10 Aligned_cols=481 Identities=9% Similarity=-0.027 Sum_probs=302.5
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHhccCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 039715 90 DLFATNVLLNVYVKLNRLPDATKLFDEMPE--RNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVL 167 (805)
Q Consensus 90 ~~~~~~~ll~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 167 (805)
++..++.++..|.+.|++++|..+|++|.. ||..+|+.++.+|.+.|++++|+.+|+++.. ..++..++..++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHH
Confidence 334444444444444444444444444421 3334444444444444444444444444432 133444444444444
Q ss_pred hccCCccchhhHHHHHH---------------HhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHH
Q 039715 168 VSMGWAELCPCVFACVY---------------KLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQ 232 (805)
Q Consensus 168 ~~~~~~~~a~~~~~~~~---------------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~ 232 (805)
.+.|++++|..+++.+. ..+.+.+..+|+.++.+|.+.|++++|.++|+ +
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---------------~ 225 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYK---------------E 225 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH---------------H
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHH---------------H
Confidence 44444444444444211 11335568899999999999998887766666 4
Q ss_pred HHHCCCCCChh-hHHHHHHHhhCCCCHHH--HHHH-HHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC--C
Q 039715 233 MRAVGFKPNNF-TFAFVLKACLGLDTIRV--AKSA-HGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK--K 306 (805)
Q Consensus 233 m~~~g~~p~~~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~ 306 (805)
|.+. .|+.. .+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|++++|.++|+++.+ +
T Consensus 226 ~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 303 (597)
T 2xpi_A 226 ALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK 303 (597)
T ss_dssp HHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGG
T ss_pred HHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCc
Confidence 4443 24433 33333333332222211 1111 44445555555666778888899999999999999999987 6
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHH
Q 039715 307 DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMD 386 (805)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 386 (805)
+..+|+.++.+|.+.|++++|+.+|++|.+.+. .+..++..++.++...|++++|..+++.+.+.. +.+..+++.++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 888899999999999999999999999987643 366777788888888888888888888777654 445666666667
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhH
Q 039715 387 VYAKCGRMENSVELFAESP---KRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPG 463 (805)
Q Consensus 387 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 463 (805)
+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------ 437 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------------------------ 437 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------
Confidence 7776666666666666543 2345566666666666666666666666665432
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 039715 464 MQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP 543 (805)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 543 (805)
+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.
T Consensus 438 ------------~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 438 ------------Q-------------------------------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp ------------T-------------------------------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred ------------c-------------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 1 133344444444444455555555555554431 22
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHH
Q 039715 544 NNLTFVGVLSACSNGGLLEQGEAYFKSMVANY---GIEPC--IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIW 616 (805)
Q Consensus 544 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~ 616 (805)
+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| +..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 34455555555555555555555555554322 44565 567777777777777777777777765 2234 78899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 039715 617 RALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM 659 (805)
Q Consensus 617 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 659 (805)
..++.+|...|++++|...++++++++|+++.++..|+++|..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998754
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=4.5e-25 Score=238.26 Aligned_cols=371 Identities=10% Similarity=0.072 Sum_probs=250.7
Q ss_pred HhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChhHH
Q 039715 251 ACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK---KDVIPWSFMIARYAQTDLSIDA 327 (805)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 327 (805)
.+.+.|+++.|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 3445566666666666655553 22334444555555566666666655554432 2333455555555556666666
Q ss_pred HHHHHHHHHCCCCCC-hhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 039715 328 VELFCRMRQAFVAPN-QFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK 406 (805)
Q Consensus 328 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 406 (805)
+..|+++.+. .|+ ..++..+..++...|++++|...+..+++.. +.+..
T Consensus 87 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~--------------------------- 136 (388)
T 1w3b_A 87 IEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYC--------------------------- 136 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTH---------------------------
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH---------------------------
Confidence 6655555542 232 2234445555555555555555555554433 22223
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHH
Q 039715 407 RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALI 486 (805)
Q Consensus 407 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 486 (805)
.|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+++.+ +.+...+..+.
T Consensus 137 ----~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 210 (388)
T 1w3b_A 137 ----VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp ----HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ----HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 34444445555555555555555554431 1123345555555555555555555555555543 33456677777
Q ss_pred HHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHH
Q 039715 487 DMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLE 562 (805)
Q Consensus 487 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 562 (805)
..|...|++++|...|++.. ..+..+|..++.+|...|++++|++.|+++.+ ..|+ ..++..+..++...|+++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 88888888888888887665 23678889999999999999999999999998 4564 568888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039715 563 QGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHIL 640 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 640 (805)
+|...|+++.+. .+.+...+..++.++.+.|++++|.+.++++ ...| +..+|..++..+...|++++|+..+++++
T Consensus 289 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 289 EAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999864 2346788999999999999999999999976 3445 57789999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCC
Q 039715 641 DFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 641 ~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
++.|+++.+|..++.+|...|+
T Consensus 367 ~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred hhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999988774
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=8.2e-25 Score=236.23 Aligned_cols=344 Identities=13% Similarity=0.106 Sum_probs=298.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 039715 314 MIARYAQTDLSIDAVELFCRMRQAFVAPNQ-FTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCG 392 (805)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 392 (805)
+...+.+.|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...++..++.. +.+..++..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677889999999999888774 4444 445555666788899999999999888875 667889999999999999
Q ss_pred ChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccCCchhHHHHHH
Q 039715 393 RMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLAALEPGMQVHC 468 (805)
Q Consensus 393 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~ 468 (805)
++++|...|+++.+ .+..+|..+..++.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|.+.+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999988642 35668999999999999999999999999875 45554 56677788889999999999999
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-
Q 039715 469 LTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN- 544 (805)
Q Consensus 469 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 544 (805)
.+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|++..+ +.|+
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCC
Confidence 999875 45678899999999999999999999999863 3677899999999999999999999999998 4564
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC--CCCCHHHHHHHHH
Q 039715 545 NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP--FQPSVMIWRALLG 621 (805)
Q Consensus 545 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~--~~p~~~~~~~l~~ 621 (805)
..++..+..++...|++++|...|+++.+ +.| +...|..++..|.+.|++++|.+.++++. .+++..+|..++.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 66888999999999999999999999985 456 46789999999999999999999999772 2357789999999
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 622 ACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 622 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+...|++++|+..+++++++.|+++.++..++.+|...|++++|.+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999987
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=4.3e-26 Score=250.60 Aligned_cols=184 Identities=10% Similarity=0.083 Sum_probs=173.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCC---------chhHHHHHHHHHHcCCCCcHh
Q 039715 410 VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAA---------LEPGMQVHCLTVKANYDMDVV 480 (805)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 480 (805)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||++||.+|+..+. ++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45888999999999999999999999999999999999999999987664 577999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcC----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMN----DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACS 556 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 556 (805)
+||+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 56999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhc
Q 039715 557 NGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRA 594 (805)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 594 (805)
+.|++++|.++|++|.+. +..|+..+|+.+++.|.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999976 9999999999999998763
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=5.6e-26 Score=249.73 Aligned_cols=211 Identities=12% Similarity=0.066 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHCCCCCCh-hHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcC
Q 039715 326 DAVELFCRMRQAFVAPNQ-FTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAES 404 (805)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 404 (805)
.+..+.+++.+.++.+.. ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 344555666666554433 346677777777777777777777777777777777777777777766654321
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHH
Q 039715 405 PKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANA 484 (805)
Q Consensus 405 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 484 (805)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+||+
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 12345688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHhhhcC----CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 039715 485 LIDMYAKCGSITDARLVFDMMN----DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNG 558 (805)
Q Consensus 485 li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 558 (805)
||.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..+...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999996 5799999999999999999999999999999999999999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.6e-22 Score=221.41 Aligned_cols=430 Identities=10% Similarity=-0.006 Sum_probs=295.5
Q ss_pred cccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHH
Q 039715 220 NDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRI 299 (805)
Q Consensus 220 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 299 (805)
.|++++|+..|+++.... |+...|..+..++...|+++.|.+.++.+++.. +.+..++..+..+|.+.|++++|...
T Consensus 19 ~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344445555555666654 678888888888888889999998888888875 44567788888888888888888888
Q ss_pred HhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCC--
Q 039715 300 FEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGL-- 374 (805)
Q Consensus 300 f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-- 374 (805)
|+++... +......++..+........+.+.+..+...+..|+...+..-...............+...+.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 8876432 23334444444444333333333333222222222222111111111111111111111111111110
Q ss_pred -------CccHHHHHHHHHHHHh---cCChHHHHHHHhcCCC----------------C-ChhhHHHHHHHHHHcCChHH
Q 039715 375 -------LSDVFVSNALMDVYAK---CGRMENSVELFAESPK----------------R-NHVTWNTMIVGYVQLGEVGK 427 (805)
Q Consensus 375 -------~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~~ 427 (805)
+.+...+..+...+.. .|++++|...|+++.+ + +...|..+...+...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 1224444444444544 7888888888876543 1 34578888899999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC-
Q 039715 428 AMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN- 506 (805)
Q Consensus 428 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~- 506 (805)
|+..|+++.+.. |+...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 256 A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 256 AHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999998865 336678888888999999999999999988765 4467788899999999999999999998875
Q ss_pred --CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----
Q 039715 507 --DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC---- 580 (805)
Q Consensus 507 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---- 580 (805)
..+...|..++..|...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+.+...-.++
T Consensus 333 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 411 (514)
T 2gw1_A 333 LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG 411 (514)
T ss_dssp TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSC
T ss_pred hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHH
Confidence 3367788999999999999999999999998852 234667888888899999999999999988764332333
Q ss_pred hHHHHHHHHHHHh---cCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 581 IEHYTSMVSLLGR---AGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 581 ~~~~~~li~~~~~---~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
...+..++..|.+ .|++++|.+.++++ ...| +..+|..++..+...|++++|...+++++++.|+++..+..+..
T Consensus 412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3488899999999 99999999999876 2233 56788899999999999999999999999999988887776644
Q ss_pred H
Q 039715 656 I 656 (805)
Q Consensus 656 ~ 656 (805)
.
T Consensus 492 ~ 492 (514)
T 2gw1_A 492 A 492 (514)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=8.2e-22 Score=217.17 Aligned_cols=322 Identities=10% Similarity=0.060 Sum_probs=216.0
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 039715 310 PWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYA 389 (805)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 389 (805)
.|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..+|.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 45555555555555555555555555431 2234455555555555555555555555555544 333455555666666
Q ss_pred hcCChHHHHHHHhcCCCC---Ch---hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhH
Q 039715 390 KCGRMENSVELFAESPKR---NH---VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPG 463 (805)
Q Consensus 390 ~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 463 (805)
+.|++++|...|+++.+. +. ..|..++..+...+ +..+...+...|++++|
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCHHHH
Confidence 666666666666554332 12 34444433311110 01111223334444444
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 039715 464 MQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG 540 (805)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 540 (805)
...+..+.+.. +.+..++..++.+|.+.|++++|.+.|+++. ..+..+|..++..|...|++++|+..|+++.+
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 239 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK-- 239 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 44444444432 3355667777778888888888888887765 34678888888899999999999999999887
Q ss_pred CCCCHHH-HHHH------------HHHHHcCCCHHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHH
Q 039715 541 WRPNNLT-FVGV------------LSACSNGGLLEQGEAYFKSMVANYGIEPC-----IEHYTSMVSLLGRAGHLDKAAK 602 (805)
Q Consensus 541 ~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~ 602 (805)
..|+... +..+ ..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.+|.+.|++++|++
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4565443 3333 67889999999999999999854 454 4588999999999999999999
Q ss_pred HHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 603 LIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 603 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
.++++ ...| +...|..++.+|...|++++|+..++++++++|+++.++..++.+....++
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 99976 3344 678999999999999999999999999999999999999999977666554
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.1e-21 Score=217.81 Aligned_cols=384 Identities=11% Similarity=-0.021 Sum_probs=309.1
Q ss_pred HhHHHHHHHHHHcCCChHHHHHHHhhCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh
Q 039715 277 LYVAVALLDLYTKSGEISNARRIFEEMPK--KDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACA 354 (805)
Q Consensus 277 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 354 (805)
...+..+...|.+.|++++|...|+++.. |+...|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34566778889999999999999998864 677789999999999999999999999998864 335568888999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHH---------------------------------
Q 039715 355 TMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELF--------------------------------- 401 (805)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f--------------------------------- 401 (805)
..|++++|...++.+.+.+. ++......++..+.+......+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999998773 33333334444433322222222211
Q ss_pred -----hcCC---------CC-ChhhHHHHHHHHHH---cCChHHHHHHHHHHhh-----cCCCC--------ChhhHHHH
Q 039715 402 -----AESP---------KR-NHVTWNTMIVGYVQ---LGEVGKAMIMFSKMLE-----EQVPA--------TEVTYSSV 450 (805)
Q Consensus 402 -----~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~l 450 (805)
.... .+ +...|......+.. .|++++|+..|+++.. ....| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1110 01 13445555555554 8999999999999987 32222 23467778
Q ss_pred HHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChH
Q 039715 451 LRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSA 527 (805)
Q Consensus 451 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 527 (805)
...+...|++++|...+..+.+.... ..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999988644 88899999999999999999999998764 36778999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHc
Q 039715 528 EVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEG 606 (805)
Q Consensus 528 ~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~ 606 (805)
+|+..|+++.+. .| +...+..+...+...|++++|..+++.+.+.. +.+...+..++..|.+.|++++|.+.+++
T Consensus 322 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999984 44 46688888899999999999999999998642 23567899999999999999999999987
Q ss_pred C----CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 607 I----PFQPS----VMIWRALLGACII---HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 607 ~----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+ |..++ ...|..++..+.. .|++++|+..+++++++.|+++.++..++.+|...|++++|.+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 6 32233 4489999999999 9999999999999999999999999999999999999999987
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=6.1e-20 Score=202.18 Aligned_cols=286 Identities=12% Similarity=0.101 Sum_probs=206.9
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 039715 377 DVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRA 453 (805)
Q Consensus 377 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 453 (805)
+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344445555555555555555555554321 234455555555555555555555555555432 1223344455555
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcH---hHHH------------HHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDV---VVAN------------ALIDMYAKCGSITDARLVFDMMN---DWNEVSWNA 515 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~------------~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 515 (805)
+...|++++|...+..+.+.. +.+. ..+. .+...|.+.|++++|...|+++. ..+...|..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 555555555555555555433 1222 3333 33556899999999999999886 347889999
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHH-------
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSM------- 587 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l------- 587 (805)
++..|...|++++|++.|+++.+.. +.+..++..+..++...|++++|...|+.+... .|+ ...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999852 345778999999999999999999999999854 454 4444444
Q ss_pred -----HHHHHhcCCHHHHHHHHHcC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 039715 588 -----VSLLGRAGHLDKAAKLIEGI-PFQPS-----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNI 656 (805)
Q Consensus 588 -----i~~~~~~g~~~eA~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 656 (805)
+..+.+.|++++|.+.++++ ...|+ ...|..++..+...|++++|+..+++++++.|+++.++..++.+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 88999999999999999877 23344 34788899999999999999999999999999999999999999
Q ss_pred HHhcCChHHHhh
Q 039715 657 YAMARSWEKAAS 668 (805)
Q Consensus 657 ~~~~g~~~~a~~ 668 (805)
|...|++++|.+
T Consensus 339 ~~~~~~~~~A~~ 350 (450)
T 2y4t_A 339 YLIEEMYDEAIQ 350 (450)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHhcCHHHHHH
Confidence 999999999988
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=1.1e-19 Score=204.94 Aligned_cols=257 Identities=10% Similarity=-0.002 Sum_probs=203.6
Q ss_pred CChHHHHHHHhcCCCC---C-------hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCch
Q 039715 392 GRMENSVELFAESPKR---N-------HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALE 461 (805)
Q Consensus 392 g~~~~A~~~f~~~~~~---~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 461 (805)
|++++|..+|+++.+. + ..+|..+...+...|++++|+..|++..+. .|+...+..+...+...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence 4667777777765442 2 224666777888899999999999999885 455778888888999999999
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
.|...+..+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999998876 45678899999999999999999999998763 3677899999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC----ChHHHHHHHHHHHhc----------CCHHHHHHHH
Q 039715 539 RGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP----CIEHYTSMVSLLGRA----------GHLDKAAKLI 604 (805)
Q Consensus 539 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~----------g~~~eA~~~~ 604 (805)
.. +.+...+..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |++++|...+
T Consensus 373 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 373 KF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp HC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 53 23456788888899999999999999999875431111 223355566778888 9999999999
Q ss_pred HcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 605 EGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 605 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
+++ ...| +...|..++..|...|++++|...+++++++.|+++.....
T Consensus 452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 876 2233 56789999999999999999999999999999988766543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=6.2e-20 Score=207.09 Aligned_cols=411 Identities=10% Similarity=-0.001 Sum_probs=297.0
Q ss_pred hHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC---CCcccHHHHHHHHHh
Q 039715 244 TFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK---KDVIPWSFMIARYAQ 320 (805)
Q Consensus 244 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 320 (805)
.+......+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...|..+...+..
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 34555566667777777777777777664 34566777777777777777777777776643 245567777777777
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhcCChHHHH
Q 039715 321 TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGL--LSDVFVSNALMDVYAKCGRMENSV 398 (805)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~ 398 (805)
.|++++|+..|+.+ . ..|+... ..+..+...+....+...++.+++... .+........+..|....+.+.+.
T Consensus 106 ~g~~~~A~~~~~~~-~--~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-S--LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHH-h--cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 78888887777533 2 1222211 112233333444566666666644310 011111233445566777888888
Q ss_pred HHHhcCCCCChh---hHHHHHHHHHH--------cCChHHHHHHHHHHhhcCCCCCh--------hhHHHHHHHHhccCC
Q 039715 399 ELFAESPKRNHV---TWNTMIVGYVQ--------LGEVGKAMIMFSKMLEEQVPATE--------VTYSSVLRACASLAA 459 (805)
Q Consensus 399 ~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~~~ 459 (805)
..+......+.. .+..+...+.. .|++++|+.+|+++.+.. |+. .++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhccc
Confidence 877776665443 33333333322 257899999999998753 442 246666777888999
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHH
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLM 536 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 536 (805)
+++|...+..+.+... +..++..+...|...|++++|.+.|+++. ..+..+|..++..|...|++++|+..|+++
T Consensus 259 ~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999998753 47888999999999999999999999886 346889999999999999999999999999
Q ss_pred HHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC----CCC-
Q 039715 537 QQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQ- 610 (805)
Q Consensus 537 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~- 610 (805)
.+. .| +...+..+...+...|++++|..+++.+.+.. +.+...+..++..|.+.|++++|.+.++++ |..
T Consensus 337 ~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 337 QSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 985 45 45688889999999999999999999998652 235678999999999999999999999875 211
Q ss_pred ---CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 611 ---PSVMIWRALLGACIIH----------NNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 611 ---p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.....+..+...+... |++++|+..+++++++.|+++.++..++.+|...|++++|.+
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 1223455566777788 999999999999999999999999999999999999999987
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=3.1e-16 Score=181.52 Aligned_cols=377 Identities=10% Similarity=0.074 Sum_probs=270.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhC--CCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCC
Q 039715 246 AFVLKACLGLDTIRVAKSAHGCALKTC--YEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDL 323 (805)
Q Consensus 246 ~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 323 (805)
....+++...|...++.++++.++-.+ +..+....+.|+.+..+. +..+.....++...-+ ..-+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 334455556666666666666665221 112334444455544444 3344444444433212 3446667778888
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhc
Q 039715 324 SIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAE 403 (805)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 403 (805)
+++|..+|++... .......++ ...+++++|.++.+++ .+..+|..+..++.+.|++++|.+.|.+
T Consensus 1065 yEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 8888888888521 112222222 2667788888777754 3467888899999999999999999866
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHH
Q 039715 404 SPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVAN 483 (805)
Q Consensus 404 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 483 (805)
. .|...|..++..+.+.|++++|++.|...++.. ++....+.++.+|++.++++....+. + .++...+.
T Consensus 1131 A--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1131 A--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred c--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence 4 567778888999999999999999998776654 33333345888888888877544332 1 33555666
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQ 563 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 563 (805)
.+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. .+..+|..+..+|...|.+..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 7889999999999999999885 48899999999999999999998877 345788888888988899888
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 039715 564 GEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIH--NNVEIGRLSAQHI 639 (805)
Q Consensus 564 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~--g~~~~a~~~~~~~ 639 (805)
|..... ++..++..+..++..|.+.|.++||+++++.. ..+|. ...|.-|..+|.+. ++..++.+.|..-
T Consensus 1269 A~~cgl------~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1269 AQMCGL------HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHHHH------hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 887643 24456778889999999999999999999855 44443 45677777777665 4788888999988
Q ss_pred hccCC-----CCcchHHHHHHHHHhcCChHHHhh
Q 039715 640 LDFEP-----EDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 640 ~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..+.| +++..|.-+..+|.+.|+|+.|..
T Consensus 1343 ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1343 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88887 788889999999999999999996
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=4e-15 Score=172.32 Aligned_cols=201 Identities=13% Similarity=0.149 Sum_probs=119.2
Q ss_pred HHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCcc
Q 039715 95 NVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAE 174 (805)
Q Consensus 95 ~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 174 (805)
+..+..+++.|.++.+...-.+.. ...-|..|++.+.+. +++.|.++...+.+. .|....+..++..+.+.+.+.
T Consensus 486 ~Kvi~~l~~~gq~~ki~~Y~~~~~--~~pDy~~ll~~~~~~-~P~~~~~fa~~L~~~--~~p~~d~~~ivd~f~~~~~iq 560 (1630)
T 1xi4_A 486 NKVIQCFAETGQVQKIVLYAKKVG--YTPDWIFLLRNVMRI-SPDQGQQFAQMLVQD--EEPLADITQIVDVFMEYNLIQ 560 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHhccC--CCccHHHHHHHHhhc-ChHHHHHHHHHHhcC--CCCccCHHHHHHHHHhcCcHH
Confidence 344444555555555444433321 133478888888755 588888877777664 334556788888888888888
Q ss_pred chhhHHHHHHHhCCCCchhh-----------------------------HHHHHHHHHhcCCHHHHHHHHhhh-------
Q 039715 175 LCPCVFACVYKLGHDSNAFV-----------------------------GTALIDAFSVCGCVEFARKVFDGL------- 218 (805)
Q Consensus 175 ~a~~~~~~~~~~g~~~~~~~-----------------------------~~~li~~y~~~g~~~~A~~~~~~~------- 218 (805)
++..++-.+.+.+-+.+... +..+...+-+.|-+..|.+.+..+
T Consensus 561 ~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~ 640 (1630)
T 1xi4_A 561 QCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAV 640 (1630)
T ss_pred HHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHh
Confidence 88888877777664322222 344456666677777777777654
Q ss_pred ---------------ccccHHHHHHHHHHHHHCCCCCChhhHH-------------HHHHHhhCCCCHHHHHHHHHHHHH
Q 039715 219 ---------------FNDCFEEALNFFSQMRAVGFKPNNFTFA-------------FVLKACLGLDTIRVAKSAHGCALK 270 (805)
Q Consensus 219 ---------------~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------------~ll~~~~~~~~~~~a~~~~~~~~~ 270 (805)
..=..+.+++.+++|...+++-|..... .++..+-+.+.++.-.-.++.++
T Consensus 641 ~~~~~~~~~~l~~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv- 719 (1630)
T 1xi4_A 641 VHTHLLNPEWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIV- 719 (1630)
T ss_pred hccCcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhc-
Confidence 2224567777777777655443322222 22222222222222222222221
Q ss_pred hCCCCcHhHHHHHHHHHHcCCChHHHHHHHhh
Q 039715 271 TCYEMDLYVAVALLDLYTKSGEISNARRIFEE 302 (805)
Q Consensus 271 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 302 (805)
.+..|+.+....|.+.++.|++.+.+++.++
T Consensus 720 -~~s~d~~vhfkyi~aa~~~~q~~everi~re 750 (1630)
T 1xi4_A 720 -NFSQDPDVHFKYIQAACKTGQIKEVERICRE 750 (1630)
T ss_pred -cccCChHHHHHHHHHHHHhCCchhhhHHhcc
Confidence 1345777888888888888888887777655
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=8.9e-18 Score=178.32 Aligned_cols=323 Identities=11% Similarity=0.050 Sum_probs=226.9
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHH
Q 039715 308 VIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDV 387 (805)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 387 (805)
+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3456667777788888888888888777642 2245566666666666777777777776666654 3344555556666
Q ss_pred HHhcCChHHHHHHHhcCCCCCh------hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCch
Q 039715 388 YAKCGRMENSVELFAESPKRNH------VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALE 461 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 461 (805)
|.+.|++++|...|++..+.++ ..|..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666655433211 22222210000 000111234556666777
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
+|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777776666654 34567788888888889999999988887763 3677888899999999999999999999988
Q ss_pred cCCCCCHH-HHH------------HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-h----HHHHHHHHHHHhcCCHHHH
Q 039715 539 RGWRPNNL-TFV------------GVLSACSNGGLLEQGEAYFKSMVANYGIEPC-I----EHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 539 ~g~~p~~~-t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~----~~~~~li~~~~~~g~~~eA 600 (805)
. .|+.. .+. .+...+...|++++|...++.+.+. .|+ . ..+..++..|.+.|++++|
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 4 45433 222 2355688899999999999999865 343 2 3456688999999999999
Q ss_pred HHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 601 AKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 601 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
.+.+++. ...| +...|..++..+...|++++|+..++++++++|+++..+..|+.++...+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999876 2234 67899999999999999999999999999999999999999998877654
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=1.2e-17 Score=177.27 Aligned_cols=323 Identities=12% Similarity=0.063 Sum_probs=233.4
Q ss_pred hhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHH
Q 039715 343 QFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGY 419 (805)
Q Consensus 343 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 419 (805)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3455566666777777777777777777654 34556666677777777777777777766432 2455667777777
Q ss_pred HHcCChHHHHHHHHHHhhcCCCC---Chh-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 039715 420 VQLGEVGKAMIMFSKMLEEQVPA---TEV-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSI 495 (805)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 495 (805)
...|++++|+..|+++.+. .| +.. .+..+.... ....+..+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCH
Confidence 7777777777777776653 33 211 111111100 011233456789999999
Q ss_pred HHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 039715 496 TDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 496 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 571 (805)
++|.+.|+++. ..+...|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|...|+.+
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999876 347889999999999999999999999999984 45 5668888999999999999999999999
Q ss_pred HHhcCCCCC-hHHHH------------HHHHHHHhcCCHHHHHHHHHcC-CCCCC-H----HHHHHHHHHHHHcCCHHHH
Q 039715 572 VANYGIEPC-IEHYT------------SMVSLLGRAGHLDKAAKLIEGI-PFQPS-V----MIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 572 ~~~~~~~p~-~~~~~------------~li~~~~~~g~~~eA~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a 632 (805)
.+. .|+ ...+. .++..+.+.|++++|.+.++++ ...|+ . ..|..+...+...|++++|
T Consensus 215 ~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 854 343 23222 3367799999999999999876 22333 3 2355678889999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEEeeCCCCCccHHHHHHHHHHHHHHHHH
Q 039715 633 RLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGMLEWLNMKSRK 711 (805)
Q Consensus 633 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 711 (805)
+..+++++++.|+++..+..++.+|...|++++|.+ .|...-...|...++...|..+...+++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~---------------~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ---------------DYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH---------------HHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH---------------HHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988 1111123346656666666666655543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.3e-17 Score=174.80 Aligned_cols=285 Identities=10% Similarity=0.010 Sum_probs=222.2
Q ss_pred CccHHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHH
Q 039715 375 LSDVFVSNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVL 451 (805)
Q Consensus 375 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 451 (805)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34455566667777777777777777766542 244556667777777888888888888877643 23445666777
Q ss_pred HHHhccC-CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChH
Q 039715 452 RACASLA-ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSA 527 (805)
Q Consensus 452 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 527 (805)
..+...| ++++|...+..+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7788888888777665 44567788889999999999999999988763 35677888999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-------CCChHHHHHHHHHHHhcCCHHH
Q 039715 528 EVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI-------EPCIEHYTSMVSLLGRAGHLDK 599 (805)
Q Consensus 528 ~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-------~p~~~~~~~li~~~~~~g~~~e 599 (805)
+|++.|+++.+. .| +...+..+...+...|++++|..+++.+.+...- ......+..++..|.+.|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999884 45 4567888888899999999999999998864311 2346789999999999999999
Q ss_pred HHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH-HhcCCh
Q 039715 600 AAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY-AMARSW 663 (805)
Q Consensus 600 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 663 (805)
|.+.++++ ... .+...|..+...+...|++++|...++++++++|+++..+..++.+| ...|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999876 222 35678999999999999999999999999999999999999999998 455544
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.1e-17 Score=174.80 Aligned_cols=346 Identities=14% Similarity=0.100 Sum_probs=170.1
Q ss_pred HhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHH
Q 039715 102 VKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFA 181 (805)
Q Consensus 102 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 181 (805)
-+.|++++|.+.+++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37888999999999997664 8999999999999999999999763 688899999999999999999999888
Q ss_pred HHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHH
Q 039715 182 CVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVA 261 (805)
Q Consensus 182 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 261 (805)
..++. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|..+...|...|.++.|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------------------~pn~~a~~~IGd~~~~~g~yeeA 141 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN----------------------GPNNAHIQQVGDRCYDEKMYDAA 141 (449)
T ss_dssp -------------------------CHHHHTTTTT----------------------CC----------------CTTTH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----------------------CCcHHHHHHHHHHHHHcCCHHHH
Confidence 88875 4668889999999999999998887775 47778999999999999999999
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 039715 262 KSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAP 341 (805)
Q Consensus 262 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 341 (805)
+..|..+ ..|..|+..+.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+. +.|
T Consensus 142 ~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a 207 (449)
T 1b89_A 142 KLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA 207 (449)
T ss_dssp HHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH
T ss_pred HHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH
Confidence 9999976 46889999999999999999999998 378899999999999999999966555422 334
Q ss_pred ChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhc--CChHHHHHHHhcCCC--------CChhh
Q 039715 342 NQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKC--GRMENSVELFAESPK--------RNHVT 411 (805)
Q Consensus 342 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--g~~~~A~~~f~~~~~--------~~~~~ 411 (805)
+ -...++..|.+.|.++++..+++..+... +-...+++-|.-.|++- +++.+.++.|..-.. .+...
T Consensus 208 d--~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp H--HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred h--hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3 35578889999999999999999988655 55577888888888774 567788888875433 25678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK 491 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 491 (805)
|..+...|.+.++++.|... |.+. +|+...-..+.....+..+.+.-.+.....+.. .+...|.|+.....
T Consensus 285 w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~----~p~~l~~ll~~l~~ 355 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSP 355 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGG
T ss_pred HHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 99999999999999999874 4432 344343444444455555555444444433322 12335555555555
Q ss_pred cCCHHHHHHHhhhc
Q 039715 492 CGSITDARLVFDMM 505 (805)
Q Consensus 492 ~g~~~~A~~~~~~~ 505 (805)
.=+...+.++|++.
T Consensus 356 ~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 356 RLDHTRAVNYFSKV 369 (449)
T ss_dssp GCCHHHHHHHHHHT
T ss_pred ccCcHHHHHHHHHc
Confidence 55555555555443
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=1.1e-15 Score=169.90 Aligned_cols=365 Identities=9% Similarity=-0.020 Sum_probs=278.5
Q ss_pred cHhHHHHHHHHHHc----CCChHHHHHHHhhCCCC-CcccHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHH
Q 039715 276 DLYVAVALLDLYTK----SGEISNARRIFEEMPKK-DVIPWSFMIARYAQ----TDLSIDAVELFCRMRQAFVAPNQFTF 346 (805)
Q Consensus 276 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 346 (805)
+......|...|.. .+++++|...|++..+. +...+..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44555556666666 67777777777765433 45566777777777 777888888888777654 45555
Q ss_pred HHHHHHHhc----cCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhhHHHHHH
Q 039715 347 VSVLQACAT----MEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAK----CGRMENSVELFAESPK-RNHVTWNTMIV 417 (805)
Q Consensus 347 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~ 417 (805)
..+...+.. .+++++|...++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666665 677888888888887765 45566777777776 6788888888876443 46677888888
Q ss_pred HHHH----cCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhc----cCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 039715 418 GYVQ----LGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACAS----LAALEPGMQVHCLTVKANYDMDVVVANALIDMY 489 (805)
Q Consensus 418 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 489 (805)
.|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.+ +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8887 788888988888887754 44566666666664 678888888888888765 456777788888
Q ss_pred Hh----cCCHHHHHHHhhhcCCC-CHhHHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 039715 490 AK----CGSITDARLVFDMMNDW-NEVSWNAMISGYSMH-----GLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGG 559 (805)
Q Consensus 490 ~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 559 (805)
.. .++.++|.+.|++..+. +...+..+...|... +++++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 88 89999999999988654 677888888888887 89999999999999865 4456667777776656
Q ss_pred ---CHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCC
Q 039715 560 ---LLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGR----AGHLDKAAKLIEGIPFQPSVMIWRALLGACII----HNN 628 (805)
Q Consensus 560 ---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 628 (805)
+.++|.++|++..+. .++..+..|..+|.. .+++++|.+++++.-...++..+..|...|.. .++
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 789999999998854 467888899999998 89999999999977434567889999999988 899
Q ss_pred HHHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 039715 629 VEIGRLSAQHILDFEPE---DEATHVLLSNIYAM 659 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 659 (805)
.++|...++++++..|+ ++.+...|+.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999999854 66666667665443
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=2e-16 Score=165.80 Aligned_cols=256 Identities=12% Similarity=0.046 Sum_probs=223.0
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHH
Q 039715 407 RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALI 486 (805)
Q Consensus 407 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 486 (805)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...+..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456678888999999999999999999998764 3344566778888899999999999999999875 45678899999
Q ss_pred HHHHhcC-CHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 039715 487 DMYAKCG-SITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLE 562 (805)
Q Consensus 487 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 562 (805)
..|...| ++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 367789999999999999999999999999853 224567777888999999999
Q ss_pred HHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC-----------CCCCHHHHHHHHHHHHHcCCHH
Q 039715 563 QGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP-----------FQPSVMIWRALLGACIIHNNVE 630 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-----------~~p~~~~~~~l~~~~~~~g~~~ 630 (805)
+|..+++.+.+ ..| +...+..++..|.+.|++++|.+.++++- ...+..+|..++..+...|+++
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999884 445 56889999999999999999999998651 0234578999999999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 631 IGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 631 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|+..+++++++.|+++..+..++.+|...|++++|.+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999988
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.4e-17 Score=173.95 Aligned_cols=286 Identities=12% Similarity=0.116 Sum_probs=120.3
Q ss_pred HcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHH
Q 039715 288 TKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHS 367 (805)
Q Consensus 288 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 367 (805)
-+.|++++|.+.++++..+ .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999655 49999999999999999999999763 578899999999999999999999888
Q ss_pred HHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhH
Q 039715 368 LVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTY 447 (805)
Q Consensus 368 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 447 (805)
...+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 45578899999999999999999988864 67779999999999999999999999977 367
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChH
Q 039715 448 SSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSA 527 (805)
Q Consensus 448 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 527 (805)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 78888888888888888877776 267778888888888888888877766654 44444456777788888888
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCC------ChHHHHHHHHHHHhcCCHH
Q 039715 528 EVLKVFDLMQQRGWRPN-NLTFVGVLSACS--NGGLLEQGEAYFKSMVANYGIEP------CIEHYTSMVSLLGRAGHLD 598 (805)
Q Consensus 528 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~ 598 (805)
+|+.+++..+. ..+. ...|+.+.-+++ +.+++.+.++.|.. +-+++| +..+|..++.+|...|.++
T Consensus 225 Eai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 225 ELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 88888887775 3332 334444444443 34455555554432 224444 3566777788888888888
Q ss_pred HHHHHHHcC
Q 039715 599 KAAKLIEGI 607 (805)
Q Consensus 599 eA~~~~~~~ 607 (805)
.|...+-+-
T Consensus 300 ~A~~tm~~h 308 (449)
T 1b89_A 300 NAIITMMNH 308 (449)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 777665443
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=6.8e-17 Score=172.45 Aligned_cols=273 Identities=11% Similarity=0.052 Sum_probs=217.2
Q ss_pred HHhcCChHHHHH-HHhcCCC---C----ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCC
Q 039715 388 YAKCGRMENSVE-LFAESPK---R----NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAA 459 (805)
Q Consensus 388 y~~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 459 (805)
|.-.|++++|.. .|++... . +...|..+...|.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577888887 7775432 1 34568888889999999999999999988753 3355577888888899999
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHH----------------HHHHHH
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---NEVSWN----------------AMISGY 520 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~----------------~li~~~ 520 (805)
+++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++... +...+. .+...+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999888876 457788889999999999999999999887632 222222 233334
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRPN---NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH 596 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 596 (805)
..|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+... .| +...+..++..|.+.|+
T Consensus 193 -~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 193 -SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp -HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred -hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCC
Confidence 889999999999999985 454 678889999999999999999999999854 45 57889999999999999
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----------cchHHHHHHHHHhcCCh
Q 039715 597 LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPED-----------EATHVLLSNIYAMARSW 663 (805)
Q Consensus 597 ~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~ 663 (805)
+++|.+.++++ ...| +...|..++..|...|++++|+..+++++++.|++ +.++..++.+|...|++
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 99999999976 2234 57889999999999999999999999999999988 78999999999999999
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
++|.+
T Consensus 347 ~~A~~ 351 (368)
T 1fch_A 347 DAYGA 351 (368)
T ss_dssp GGHHH
T ss_pred HhHHH
Confidence 99976
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=1.2e-14 Score=163.31 Aligned_cols=201 Identities=9% Similarity=-0.035 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-------cCCHH-------HHHHHhhhcCC---C-CHhHHHHHHHHHHhC
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAK-------CGSIT-------DARLVFDMMND---W-NEVSWNAMISGYSMH 523 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 523 (805)
.+..+++.++... +.+..+|..++..+.+ .|+++ +|.++|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4556677777653 4466777777777765 67766 78888887763 2 567788888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHH-HHhcCCHHH
Q 039715 524 GLSAEVLKVFDLMQQRGWRPNN--LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSL-LGRAGHLDK 599 (805)
Q Consensus 524 g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~e 599 (805)
|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|+.+|++..+ ..|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhH
Confidence 888888888888887 45653 3677777777777888888888888773 3332 3333333222 335788888
Q ss_pred HHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc----hHHHHHHHHHhcCChHHHhh
Q 039715 600 AAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA----THVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 600 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~ 668 (805)
|..+|++. ...| +...|..++..+...|+.++|..+++++++..|.++. .+..........|+.+++.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888754 2223 4677888888888888888888888888887766554 56566666777777776644
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=6.6e-15 Score=165.37 Aligned_cols=397 Identities=7% Similarity=-0.007 Sum_probs=285.3
Q ss_pred ChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC--CCcccHHHHHHH-
Q 039715 241 NNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMPK--KDVIPWSFMIAR- 317 (805)
Q Consensus 241 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~- 317 (805)
|...|..++.. .+.|+++.|+.+++.+++.. +.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45567777764 66789999999999998763 55677889999999999999999999998765 455556666643
Q ss_pred HHhCCChhHHHH----HHHHHHH-CCCCCC-hhHHHHHHHHHhc---------cCCchHHHHHHHHHHHhCCCccHHHHH
Q 039715 318 YAQTDLSIDAVE----LFCRMRQ-AFVAPN-QFTFVSVLQACAT---------MEGLDLGNQIHSLVVRVGLLSDVFVSN 382 (805)
Q Consensus 318 ~~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 382 (805)
....|+.++|.+ +|++... .|..|+ ...|...+..... .|+++.|..+|+..++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 235677777665 6666654 355544 3455555554433 678889999999888732111123343
Q ss_pred HHHHHH-------------HhcCChHHHHHHHhc-------CC------CCC--------hhhHHHHHHHHHHc----CC
Q 039715 383 ALMDVY-------------AKCGRMENSVELFAE-------SP------KRN--------HVTWNTMIVGYVQL----GE 424 (805)
Q Consensus 383 ~Li~~y-------------~~~g~~~~A~~~f~~-------~~------~~~--------~~~~~~li~~~~~~----g~ 424 (805)
...... .+.++++.|..++.. +. .|+ ...|...+.....+ ++
T Consensus 170 ~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~ 249 (530)
T 2ooe_A 170 DYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 249 (530)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred HHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence 332211 124456777766553 11 111 24676666443332 23
Q ss_pred h----HHHHHHHHHHhhcCCCCChhhHHHHHHHHhc-------cCCch-------hHHHHHHHHHHcCCCCcHhHHHHHH
Q 039715 425 V----GKAMIMFSKMLEEQVPATEVTYSSVLRACAS-------LAALE-------PGMQVHCLTVKANYDMDVVVANALI 486 (805)
Q Consensus 425 ~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li 486 (805)
. ++|+.+|++..... +-+...|......+.+ .|+++ +|..+++..++.-.+.+..++..++
T Consensus 250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2 47888999988752 3345566666666654 78887 8999999998733355788999999
Q ss_pred HHHHhcCCHHHHHHHhhhcCC--C-CH-hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHcCCC
Q 039715 487 DMYAKCGSITDARLVFDMMND--W-NE-VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSA-CSNGGL 560 (805)
Q Consensus 487 ~~y~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~ 560 (805)
..+.+.|++++|.++|+++.+ + +. ..|..++..+.+.|+.++|.++|++..+. .|+ ...+...... +...|+
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCC
Confidence 999999999999999998863 3 33 58999999999999999999999999984 443 3334333222 335899
Q ss_pred HHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 039715 561 LEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS--VMIWRALLGACIIHNNVEIGR 633 (805)
Q Consensus 561 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~ 633 (805)
.++|..+|+...+.. | +...|..+++.+.+.|+.++|..+|++. |..|+ ..+|...+.....+|+.+.+.
T Consensus 407 ~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 407 KSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred hhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998653 5 5788999999999999999999999976 33343 458999999999999999999
Q ss_pred HHHHHHhccCCC
Q 039715 634 LSAQHILDFEPE 645 (805)
Q Consensus 634 ~~~~~~~~~~p~ 645 (805)
.+.+++.+..|+
T Consensus 484 ~~~~r~~~~~p~ 495 (530)
T 2ooe_A 484 KVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHCch
Confidence 999999999984
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=1.6e-14 Score=160.58 Aligned_cols=342 Identities=14% Similarity=0.037 Sum_probs=290.0
Q ss_pred CCcccHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCcc
Q 039715 306 KDVIPWSFMIARYAQ----TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACAT----MEGLDLGNQIHSLVVRVGLLSD 377 (805)
Q Consensus 306 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 377 (805)
.++..+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466677778888888 899999999999998864 56677778888877 899999999999999876 5
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHhcCCCC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHhhcCCCCChhhHH
Q 039715 378 VFVSNALMDVYAK----CGRMENSVELFAESPKR-NHVTWNTMIVGYVQ----LGEVGKAMIMFSKMLEEQVPATEVTYS 448 (805)
Q Consensus 378 ~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 448 (805)
...+..|..+|.. .+++++|...|++..+. +...+..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6677789999998 88999999999886543 67788889999988 789999999999998864 566777
Q ss_pred HHHHHHhc----cCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHhhhcCC-CCHhHHHHHHHH
Q 039715 449 SVLRACAS----LAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK----CGSITDARLVFDMMND-WNEVSWNAMISG 519 (805)
Q Consensus 449 ~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 519 (805)
.+...+.. .++.++|...+....+.+ +...+..|..+|.. .+++++|.+.|++..+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777 889999999999999876 56778889999987 8999999999998764 477788888888
Q ss_pred HHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 039715 520 YSM----HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNG-----GLLEQGEAYFKSMVANYGIEPCIEHYTSMVSL 590 (805)
Q Consensus 520 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 590 (805)
|.. .+++++|+..|++..+.| +...+..+...+... ++.++|..+|++..+. -+...+..|..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 888 899999999999998864 455667777777776 8999999999998854 355678888899
Q ss_pred HHhcC---CHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----
Q 039715 591 LGRAG---HLDKAAKLIEGIPFQPSVMIWRALLGACII----HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM---- 659 (805)
Q Consensus 591 ~~~~g---~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 659 (805)
|.+.| ++++|.++|++.-...++..+..|...|.. .++.++|+..++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88867 889999999977434678899999999998 899999999999999864 68899999999999
Q ss_pred cCChHHHhh
Q 039715 660 ARSWEKAAS 668 (805)
Q Consensus 660 ~g~~~~a~~ 668 (805)
.+++++|.+
T Consensus 416 ~~d~~~A~~ 424 (490)
T 2xm6_A 416 ERDYVQAWA 424 (490)
T ss_dssp CCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 899999977
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.3e-16 Score=170.11 Aligned_cols=254 Identities=10% Similarity=0.024 Sum_probs=211.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHH
Q 039715 408 NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALID 487 (805)
Q Consensus 408 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 487 (805)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568899999999999999999999998764 3456688889999999999999999999998875 456788999999
Q ss_pred HHHhcCCHHHHHHHhhhcCCCC---H----------hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 039715 488 MYAKCGSITDARLVFDMMNDWN---E----------VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP---NNLTFVGV 551 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~~~~---~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~l 551 (805)
.|.+.|++++|.+.|+++.+.+ . ..+..+...|...|++++|+..|+++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 9999999999999999886432 2 23344588999999999999999999995 45 47788999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 628 (805)
...+...|++++|..+|+++.+. .| +...|..++.+|.+.|++++|++.++++ ...| +..+|..++.+|...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 99999999999999999999854 34 5789999999999999999999999876 2344 57899999999999999
Q ss_pred HHHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCChHHHhh
Q 039715 629 VEIGRLSAQHILDFEPE------------DEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+++|+..+++++++.|+ +...+..|+.++...|+.+.+.+
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999999999887 36788999999999999999877
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=3.7e-16 Score=166.73 Aligned_cols=266 Identities=11% Similarity=0.007 Sum_probs=144.7
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCC
Q 039715 348 SVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESP---KRNHVTWNTMIVGYVQLGE 424 (805)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 424 (805)
.+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+...|...|+
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 147 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 147 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 33333334444444444444443332 2334445555555666666666666655432 2355667777777777888
Q ss_pred hHHHHHHHHHHhhcCCCCChhh-HHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhh
Q 039715 425 VGKAMIMFSKMLEEQVPATEVT-YSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 425 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
+++|+..|+++.... |+... +..+... . +.......+..+...+ ..|++++|...|+
T Consensus 148 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~------------~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~ 205 (368)
T 1fch_A 148 QRQACEILRDWLRYT--PAYAHLVTPAEEG-------A------------GGAGLGPSKRILGSLL-SDSLFLEVKELFL 205 (368)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------h------------hhhcccHHHHHHHHHh-hcccHHHHHHHHH
Confidence 888888888777643 22221 1100000 0 0000000111122222 5566666666666
Q ss_pred hcCC--C---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Q 039715 504 MMND--W---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI 577 (805)
Q Consensus 504 ~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 577 (805)
++.+ | +...|..++..|...|++++|+..|+++.+. .| +..++..+...+...|++++|...|+++.+.
T Consensus 206 ~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 280 (368)
T 1fch_A 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--- 280 (368)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 5541 1 3556666666666666666666666666663 33 3446666666666667777777776666643
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC----CCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 578 EP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQ---------PSVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 578 ~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~---------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
.| +...+..++.+|.+.|++++|.+.++++ |.. ....+|..++.+|...|+.++|..++++.++
T Consensus 281 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 281 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 23 3556666677777777777777666644 101 0156777777777777777777777665544
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=2.4e-15 Score=154.02 Aligned_cols=267 Identities=8% Similarity=-0.043 Sum_probs=209.1
Q ss_pred HHhcCChHHHHHHHhcCCCCCh----hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhH
Q 039715 388 YAKCGRMENSVELFAESPKRNH----VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPG 463 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 463 (805)
....|+++.|+..++.....++ .....+..+|...|++++|+..++.. -.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 4456788888888777655432 23455677888888888888765441 345566777777778888888888
Q ss_pred HHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 039715 464 MQVHCLTVKANY-DMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR 542 (805)
Q Consensus 464 ~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 542 (805)
.+.++.+...+. +.+...+..+..+|...|++++|++.|++ ..+...+..++..|.+.|++++|++.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 888888877664 44667778888999999999999999998 568889999999999999999999999999985 5
Q ss_pred CCHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHH
Q 039715 543 PNNLTF---VGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWR 617 (805)
Q Consensus 543 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 617 (805)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.++.+|.+.|++++|.+.++++ ...| ++.+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 765422 12334445669999999999999976 3347889999999999999999999999975 3345 677899
Q ss_pred HHHHHHHHcCCHHH-HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 618 ALLGACIIHNNVEI-GRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 618 ~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.++..+...|+.++ +.+.++++++++|+++.+ .++..+.+.++++..
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 99999999999876 578999999999998764 456777777777754
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=2e-15 Score=157.89 Aligned_cols=253 Identities=8% Similarity=-0.004 Sum_probs=190.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 039715 410 VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMY 489 (805)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 489 (805)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345556666666666666666666666542 2234455556666666666666666666666654 34566677777777
Q ss_pred HhcCCHHHHHHHhhhcCCC---CHhHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 039715 490 AKCGSITDARLVFDMMNDW---NEVSWNAM--------------IS-GYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGV 551 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 551 (805)
...|++++|.+.|+++.+. +...+..+ .. .+...|++++|+..++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 7777777777777766522 22233332 22 3777889999999999999853 2356788888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 628 (805)
...+...|++++|..+++.+.+. .| +...+..++..|.+.|++++|.+.++++ ...| +...|..++..+...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 88999999999999999998854 34 5778999999999999999999999876 2233 57889999999999999
Q ss_pred HHHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCChHHHhh
Q 039715 629 VEIGRLSAQHILDFEPE------------DEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+++|+..+++++++.|+ ++..+..++.+|...|++++|.+
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999998 78899999999999999999987
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=8.3e-15 Score=162.11 Aligned_cols=380 Identities=10% Similarity=-0.067 Sum_probs=200.9
Q ss_pred hhhHHHHHHHhhCCCCHHHHHHHHHHHHHh-----C---CCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCC-------C
Q 039715 242 NFTFAFVLKACLGLDTIRVAKSAHGCALKT-----C---YEMDLYVAVALLDLYTKSGEISNARRIFEEMPK-------K 306 (805)
Q Consensus 242 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-------~ 306 (805)
...|+.+...+...|+.++|.+.+.+.++. + .+....+|+.+...|...|++++|...|++..+ +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345777778888888888888888877653 1 122345677788888888888888777765421 1
Q ss_pred ----CcccHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCChh-HHHHHHHH---HhccCCchHHHHHHHHHHHhCCCc
Q 039715 307 ----DVIPWSFMIARYAQ--TDLSIDAVELFCRMRQAFVAPNQF-TFVSVLQA---CATMEGLDLGNQIHSLVVRVGLLS 376 (805)
Q Consensus 307 ----~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~ 376 (805)
...+++.+..++.. .+++++|+..|++..+. .|+.. .+..+..+ +...++.++|.+.++..++.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 12234444444444 34677888888887764 34433 33333322 345566777777777777765 33
Q ss_pred cHHHHHHHHHHHHh----cCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCh-hhHH
Q 039715 377 DVFVSNALMDVYAK----CGRMENSVELFAESP---KRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE-VTYS 448 (805)
Q Consensus 377 ~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~ 448 (805)
+..++..+...+.. .|+.++|.+.|++.. ..+...|..+...|...|++++|+..|++..+. .|+. .++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 44555555444443 456677777776533 335566777777888888888888888777664 3433 2344
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCC
Q 039715 449 SVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGL 525 (805)
Q Consensus 449 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 525 (805)
.+...+...+... .... ...........+..+.|...|++.. ..+..+|..+...|...|+
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 3333332111000 0000 0001111112233566666666654 2355677778888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 039715 526 SAEVLKVFDLMQQRGWRPNNL--TFVGVLS-ACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAK 602 (805)
Q Consensus 526 ~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~ 602 (805)
+++|++.|++.++....|... .+..+.. ...+.|+.++|+..|++.. .+.|+........ +.+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHHHH
Confidence 888888888887743322211 1222222 2346778888888887776 3456543222222 22223
Q ss_pred HHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 603 LIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 603 ~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
++++. ... .++.+|..|+..|...|++++|++.+++++++.|.+|.+...+|
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33222 112 34567778888888888888888888888888777777665554
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=3.4e-15 Score=152.98 Aligned_cols=237 Identities=11% Similarity=0.027 Sum_probs=195.9
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCCCCh--hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 039715 416 IVGYVQLGEVGKAMIMFSKMLEEQVPATE--VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG 493 (805)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 493 (805)
|.-....|++..|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+......+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34455689999999999887543 3443 3556678899999999999875543 23567788899999999999
Q ss_pred CHHHHHHHhhhcC----CC-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 039715 494 SITDARLVFDMMN----DW-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYF 568 (805)
Q Consensus 494 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 568 (805)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.|++ ..+...+..+...+.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999874 23 677888888999999999999999987 356678888899999999999999999
Q ss_pred HHHHHhcCCCCChH---HHHHHHHHHHhcCCHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 569 KSMVANYGIEPCIE---HYTSMVSLLGRAGHLDKAAKLIEGI--PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 569 ~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~eA~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
+.+.+. .|+.. ...+++..+...|++++|..+|+++ ....++..|+.++.++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999865 46542 1234456666679999999999987 123578899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHh
Q 039715 644 PEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 644 p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
|+++.++..++.++...|+++++.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHH
Confidence 999999999999999999998754
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=7.5e-16 Score=164.23 Aligned_cols=259 Identities=10% Similarity=0.005 Sum_probs=131.8
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHHHHHcCC
Q 039715 348 SVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESP---KRNHVTWNTMIVGYVQLGE 424 (805)
Q Consensus 348 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 424 (805)
.+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++++|...|++.. ..+..+|..+...|...|+
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence 33333333444444444444443332 3344555666666666666666666666543 2346677778888888888
Q ss_pred hHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhh
Q 039715 425 VGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 425 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
+++|+..|+++.+.. |+.. .+..+. ....++..+...|.+.|++++|.+.|+
T Consensus 149 ~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 149 QQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp HHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 888888888877642 2211 111110 011223333444455555555555554
Q ss_pred hcCC--C---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Q 039715 504 MMND--W---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI 577 (805)
Q Consensus 504 ~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 577 (805)
++.+ | +...|..++..|...|++++|++.|+++.+. .| +..++..+..++...|++++|+..|+++.+.
T Consensus 202 ~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 276 (365)
T 4eqf_A 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--- 276 (365)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 4431 1 3445555555555555555555555555553 23 3445555555555555555555555555532
Q ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC----CC--C--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039715 578 EP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI----PF--Q--------PSVMIWRALLGACIIHNNVEIGRLSAQHI 639 (805)
Q Consensus 578 ~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~--~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 639 (805)
.| +...+..++.+|.+.|++++|.+.++++ |. . .+..+|..+..++...|+.+.+..+.++.
T Consensus 277 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 277 QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 23 2445555555555556666555555543 10 0 02456777777777777777777665553
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=3.6e-14 Score=156.95 Aligned_cols=260 Identities=11% Similarity=-0.001 Sum_probs=154.9
Q ss_pred ChHHHHHHHhcCCC---CChhhHHHHHHH---HHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHh----ccCCchh
Q 039715 393 RMENSVELFAESPK---RNHVTWNTMIVG---YVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACA----SLAALEP 462 (805)
Q Consensus 393 ~~~~A~~~f~~~~~---~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~ 462 (805)
++++|...|++..+ .+...+..+... +...++.++|++.|++..+.. +.+...+..+...+. ..++.++
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 35555555554321 233333333332 223455556666666655432 112223333333322 2345566
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHh-----------------
Q 039715 463 GMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSM----------------- 522 (805)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~----------------- 522 (805)
|.+.+....+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|..
T Consensus 232 a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 232 GEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 666666665554 33455566666666666676666666666542 244455555544432
Q ss_pred --CCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChH----HHHHHHHH-HHhc
Q 039715 523 --HGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIE----HYTSMVSL-LGRA 594 (805)
Q Consensus 523 --~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~-~~~~ 594 (805)
.+..++|+..|++..+. .|+ ..++..+...+...|++++|...|++..+. .|+.. .+..+... +...
T Consensus 311 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~ 385 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQM 385 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHC
Confidence 23467888888888874 454 446778888899999999999999998843 44332 23344433 3478
Q ss_pred CCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 595 GHLDKAAKLIEGI-PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 595 g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|+.++|++.+++. .+.|+...+... .+.+..++++.++.+|+++.+|..||.+|...|++++|.+
T Consensus 386 ~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 386 KCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999998865 456665444333 3445677888999999999999999999999999999987
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=5e-14 Score=147.15 Aligned_cols=276 Identities=13% Similarity=0.024 Sum_probs=136.3
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHH
Q 039715 307 DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMD 386 (805)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 386 (805)
+...|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++.+.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 85 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------------- 85 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------
Confidence 34456667777777777777777777766542 1133344444444444444444444444444332
Q ss_pred HHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccCCchhHHH
Q 039715 387 VYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLAALEPGMQ 465 (805)
Q Consensus 387 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~ 465 (805)
..+...|..+...|...|++++|+..|+++.... |+.. .+..+...+
T Consensus 86 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------- 133 (327)
T 3cv0_A 86 -------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD----------- 133 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC-------------------
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH-----------
Confidence 1244556666666777777777777777776542 2222 221110000
Q ss_pred HHHHHHHcCCCCcHhHHHHH-HH-HHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 039715 466 VHCLTVKANYDMDVVVANAL-ID-MYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG 540 (805)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~l-i~-~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 540 (805)
++......+ .. .|...|++++|.+.|+++. ..+...|..++..|...|++++|+..|+++.+.
T Consensus 134 -----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 201 (327)
T 3cv0_A 134 -----------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL- 201 (327)
T ss_dssp -----------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred -----------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence 000000011 11 1334444444444444433 123445555555555555555555555555543
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC------
Q 039715 541 WRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP------ 611 (805)
Q Consensus 541 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p------ 611 (805)
.| +..++..+...+...|++++|...|+++.+. .| +...+..++..|.+.|++++|.+.++++ ...|
T Consensus 202 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 277 (327)
T 3cv0_A 202 -RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277 (327)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence 22 2344555555555555555555555555432 22 3445555555555556666555555543 1112
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 612 -------SVMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 612 -------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
+...|..+..++...|+.++|...++++++..|
T Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 244566666666666666666666665555433
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=1.3e-16 Score=179.13 Aligned_cols=124 Identities=13% Similarity=0.111 Sum_probs=112.3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHhccCC-------CCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHH
Q 039715 91 LFATNVLLNVYVKLNRLPDATKLFDEMP-------ERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAF 163 (805)
Q Consensus 91 ~~~~~~ll~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 163 (805)
..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3689999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCc-cchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 039715 164 LKVLVSMGWA-ELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKV 214 (805)
Q Consensus 164 l~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 214 (805)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++..+++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999985 78999999999999999999999999888776544444444
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=6.8e-16 Score=173.51 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=114.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC-------CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 039715 476 DMDVVVANALIDMYAKCGSITDARLVFDMMN-------DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTF 548 (805)
Q Consensus 476 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 548 (805)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4456789999999999999999999997753 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 549 VGVLSACSNGGL-LEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 549 ~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
+++|.++++.|+ .++|.++|++|.++ |+.||..+|++++....|.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999987 47899999999977 99999999999998888876666555554333
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.61 E-value=1.4e-14 Score=141.67 Aligned_cols=188 Identities=15% Similarity=0.059 Sum_probs=157.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 039715 476 DMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGV 551 (805)
Q Consensus 476 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 551 (805)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ +.|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45667788889999999999999999998763 3678999999999999999999999999998 4565 4578888
Q ss_pred HHHHHcC-----------CCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHH
Q 039715 552 LSACSNG-----------GLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRA 618 (805)
Q Consensus 552 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~ 618 (805)
..++... |++++|+..|++..+. .| +...+..+..+|...|++++|++.|++. ....++..|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 9999999999999853 56 4678899999999999999999999876 21267889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 619 LLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++.++...|++++|+..++++++++|+++..+..++.+|...|++++|.+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999976
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7e-14 Score=140.45 Aligned_cols=234 Identities=9% Similarity=-0.026 Sum_probs=159.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCC--Cc----HhHHHH
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYD--MD----VVVANA 484 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 484 (805)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45566666666777777777777766655 55556666666666666666666666665553211 11 466777
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHH
Q 039715 485 LIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQ 563 (805)
Q Consensus 485 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 563 (805)
+...|.+.|++++|.+.|+++.+.+.. ...+...|++++|+..++++.. ..|+ ...+..+...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHH
Confidence 777777888888888777776532111 2345566778888888888877 3454 3456677777778888888
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 564 GEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 564 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
|...|+.+.+.. +.+...+..++..|.+.|++++|.+.++++ ...| +...|..++..+...|+.++|...++++++
T Consensus 158 A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888877541 225677778888888888888888887765 2233 466788888888888888888888888888
Q ss_pred cC------CCCcchHHHHHH
Q 039715 642 FE------PEDEATHVLLSN 655 (805)
Q Consensus 642 ~~------p~~~~~~~~l~~ 655 (805)
+. |++...+..|..
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHHHH
Confidence 87 777666666554
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=8.8e-14 Score=141.34 Aligned_cols=238 Identities=8% Similarity=-0.117 Sum_probs=185.3
Q ss_pred cCChHHHHHHHHHHhhcCCC--C-ChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 039715 422 LGEVGKAMIMFSKMLEEQVP--A-TEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDA 498 (805)
Q Consensus 422 ~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 498 (805)
.|++++|+..|+++.+.... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777777765321 1 23466667777777788888888887777765 44677888899999999999999
Q ss_pred HHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 039715 499 RLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANY 575 (805)
Q Consensus 499 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 575 (805)
.+.|+++.+ .+...|..++..|...|++++|+..|+++.+ +.|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999988863 3678999999999999999999999999998 4676665555555667779999999999888765
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 576 GIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 576 ~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
..++...+ .++..+...+..++|.+.+++. ...|+ ...|..++..|...|++++|+..++++++++|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23344444 4777788888999999999865 22232 4688999999999999999999999999999977554
Q ss_pred HHHHHHHHHhcCChHHHhh
Q 039715 650 HVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 650 ~~~l~~~~~~~g~~~~a~~ 668 (805)
.+.++...|++++|.+
T Consensus 252 ---~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQD 267 (275)
T ss_dssp ---HHHHHHHHHHHHHC--
T ss_pred ---HHHHHHHHHHHHhhHH
Confidence 4778889999999865
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=8.4e-14 Score=139.88 Aligned_cols=210 Identities=7% Similarity=-0.060 Sum_probs=185.1
Q ss_pred hhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---C-------HhHHH
Q 039715 445 VTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---N-------EVSWN 514 (805)
Q Consensus 445 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~-------~~~~~ 514 (805)
..+..+...+...|++++|...+..+++.. .+..++..+...|...|++++|.+.|++..+. + ...|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356777888999999999999999999987 77889999999999999999999999988642 2 57899
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHh
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGR 593 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 593 (805)
.+...|...|++++|+..|+++.+ +.|+.. .+...|++++|...++.+.. ..| +...+..++..+.+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHH
Confidence 999999999999999999999999 456643 45566889999999999884 345 46788899999999
Q ss_pred cCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 594 AGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 594 ~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.|++++|.+.++++ ... .+..+|..++..+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999876 223 4678899999999999999999999999999999999999999999999999999977
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=2.2e-13 Score=138.22 Aligned_cols=245 Identities=10% Similarity=0.031 Sum_probs=129.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCCh--hhHHHHHHHHh
Q 039715 381 SNALMDVYAKCGRMENSVELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATE--VTYSSVLRACA 455 (805)
Q Consensus 381 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 455 (805)
.......|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.+..|+. ..+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455566666666666666665332 23445666666666666666666666666552211111 12444444444
Q ss_pred ccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHH
Q 039715 456 SLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDL 535 (805)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 535 (805)
..|++++|...+..+.+.. +. +...|..+...|...|++++|+..|++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~-------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TT-------------------------------RLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TT-------------------------------CTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred HcccHHHHHHHHHHHHhcC-cc-------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5555555555554444433 22 334444455555555555555555555
Q ss_pred HHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCC---HHHHHHHHHcC---
Q 039715 536 MQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGH---LDKAAKLIEGI--- 607 (805)
Q Consensus 536 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~---~~eA~~~~~~~--- 607 (805)
..+. .|+ ...+..+...+...+++++|...|+.+.+. .|+ ...+..+..++...|+ +++|...++++
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 4442 332 223333331222333555555555555432 232 3444444555554444 44444444322
Q ss_pred -CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 608 -PFQPS------VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 608 -~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
...|+ ..+|..++..|...|++++|+..++++++++|+++.+.-.++.+....+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 01122 24678888899999999999999999999999999999888877665543
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=1.8e-13 Score=144.97 Aligned_cols=243 Identities=10% Similarity=0.002 Sum_probs=189.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhccCC-chhHHHHHHHHHHcCCCCcHhHHHHHHH
Q 039715 410 VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPAT-EVTYSSVLRACASLAA-LEPGMQVHCLTVKANYDMDVVVANALID 487 (805)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 487 (805)
..|+.+...+.+.|++++|+..|++.+.. .|+ ...|..+..++...|+ +++|...++.+++.. +.+..+|..+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 45666666777777777777777777664 333 3456666666777775 777777777777765 446777888888
Q ss_pred HHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc-CCCHH
Q 039715 488 MYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSN-GGLLE 562 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~ 562 (805)
+|.+.|++++|+..|+++. ..+...|..+..++...|++++|+..|+++++ +.|+ ...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888888876 34778899999999999999999999999998 4564 5678888888888 66657
Q ss_pred HH-----HHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC--CHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcC------
Q 039715 563 QG-----EAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG--HLDKAAKLIEGIPFQPS-VMIWRALLGACIIHN------ 627 (805)
Q Consensus 563 ~a-----~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g--~~~eA~~~~~~~~~~p~-~~~~~~l~~~~~~~g------ 627 (805)
+| +..|++.+. +.| +...|..+..+|.+.| ++++|++.++++...|+ ...+..++..|...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 477888774 456 4678889999999988 68999999987755554 678899999988874
Q ss_pred --C-HHHHHHHHHHH-hccCCCCcchHHHHHHHHHhc
Q 039715 628 --N-VEIGRLSAQHI-LDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 628 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 660 (805)
+ .++|+.+++++ ++++|.....|..++..+..+
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999999999999887765
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=5.1e-13 Score=146.11 Aligned_cols=338 Identities=10% Similarity=0.007 Sum_probs=182.4
Q ss_pred hCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCCh---HHHHHHHhhCCCCCcccHHHHHHHHHhCC-----Ch
Q 039715 253 LGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEI---SNARRIFEEMPKKDVIPWSFMIARYAQTD-----LS 324 (805)
Q Consensus 253 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~ 324 (805)
.+.|+++.|.+.+....+.|. ...+..|..+|...|+. ++|...|++..+.++..+..|...+...+ ++
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 344555555555555555542 22233344555556666 78888888777666667777777565555 66
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC----hHHH
Q 039715 325 IDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGL---DLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGR----MENS 397 (805)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~----~~~A 397 (805)
++|+..|++..+.|.. ..+..+...+...+.. ..+.+.+....+.| +......|..+|...+. .+.+
T Consensus 91 ~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 91 HEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 7888888888776532 2444555555444332 33444444444444 23455566666666663 3344
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcC---ChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcC
Q 039715 398 VELFAESPKRNHVTWNTMIVGYVQLG---EVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKAN 474 (805)
Q Consensus 398 ~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 474 (805)
..+++.....++..+..|...|...| +.++|++.|++..+.|
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----------------------------------- 209 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG----------------------------------- 209 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-----------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-----------------------------------
Confidence 44455555555556666666666666 6666666666665544
Q ss_pred CCCcHhHHHHHHHHHHhc----CCHHHHHHHhhhcCCCCHhHHHHHHHH-H--HhCCChHHHHHHHHHHHHcCCCCCHHH
Q 039715 475 YDMDVVVANALIDMYAKC----GSITDARLVFDMMNDWNEVSWNAMISG-Y--SMHGLSAEVLKVFDLMQQRGWRPNNLT 547 (805)
Q Consensus 475 ~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t 547 (805)
+++...+..|..+|... +++++|.+.|++....+...+..+... | ...|++++|+..|++..+.| +...
T Consensus 210 -~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A 285 (452)
T 3e4b_A 210 -TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRA 285 (452)
T ss_dssp -CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHH
T ss_pred -CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 22233334444445433 567777777766663356666666666 3 45677888888888877765 4555
Q ss_pred HHHHHHHHHcCC-----CHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHH
Q 039715 548 FVGVLSACSNGG-----LLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGR----AGHLDKAAKLIEGIPFQPSVMIWRA 618 (805)
Q Consensus 548 ~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~ 618 (805)
...+...|. .| ++++|..+|++.. .-++..+..|..+|.. ..++++|..+|++.....+......
T Consensus 286 ~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~ 359 (452)
T 3e4b_A 286 ELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFA 359 (452)
T ss_dssp HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHH
Confidence 555555555 34 7777777776643 2355666667766665 3377777777776532334444555
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHhccCC
Q 039715 619 LLGACII----HNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 619 l~~~~~~----~g~~~~a~~~~~~~~~~~p 644 (805)
|...|.. ..|.++|..+++++.+..+
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5555543 3477888888888777654
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.49 E-value=4.5e-12 Score=128.68 Aligned_cols=228 Identities=7% Similarity=-0.108 Sum_probs=169.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhc----cCCchhHHHHHHHHHHcCCCCcHhHHH
Q 039715 408 NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACAS----LAALEPGMQVHCLTVKANYDMDVVVAN 483 (805)
Q Consensus 408 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 483 (805)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455666666666777777777777776652 233455556666666 677777777777776665 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHhhhcCC-CCHhHHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 039715 484 ALIDMYAK----CGSITDARLVFDMMND-WNEVSWNAMISGYSM----HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSA 554 (805)
Q Consensus 484 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 554 (805)
.+..+|.. .+++++|.+.|++..+ .+..++..+...|.. .|++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 77778888 8888888888877763 367788888888888 888999999999888865 45566677777
Q ss_pred HHc----CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-
Q 039715 555 CSN----GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGR----AGHLDKAAKLIEGIPFQPSVMIWRALLGACII- 625 (805)
Q Consensus 555 ~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~- 625 (805)
+.. .+++++|..+|++..+. .+...+..+..+|.+ .|++++|.+.+++.-...+...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 776 88999999999888754 245677788888888 89999999988866322346778888888888
Q ss_pred ---cCCHHHHHHHHHHHhccCCCCcc
Q 039715 626 ---HNNVEIGRLSAQHILDFEPEDEA 648 (805)
Q Consensus 626 ---~g~~~~a~~~~~~~~~~~p~~~~ 648 (805)
.++.++|+..+++++++.|+++.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999999886543
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=8.1e-13 Score=131.38 Aligned_cols=204 Identities=12% Similarity=0.068 Sum_probs=145.7
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 530 (805)
+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...|...|++++|+
T Consensus 33 ~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp ---------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH
Confidence 333334444444433333322 2345566667777777788888877777665 236678888888888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC
Q 039715 531 KVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF 609 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~ 609 (805)
+.|+++.+.. +.+...+..+...+...|++++|..+++++.+. ...+...+..++..|.+.|++++|.+.++++ ..
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 112 DMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999888853 335567777888888899999999999888754 1235678888899999999999999998865 22
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 610 -QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 610 -~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
..+..+|..+...|...|+.++|+..+++++++.|+++..+..++.+....|
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 2457789999999999999999999999999999999998888876655444
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=9.7e-12 Score=124.40 Aligned_cols=205 Identities=12% Similarity=0.015 Sum_probs=149.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 039715 409 HVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDM 488 (805)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 488 (805)
...|..+...|...|++++|+..|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 3456666666666666666666666665432 2234556666667
Q ss_pred HHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHH
Q 039715 489 YAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQG 564 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 564 (805)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776654 23566777788888888888888888888877434554 34667777778888888888
Q ss_pred HHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 565 EAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 565 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
..+|+++.+. .| +...+..++..|.+.|++++|.+.++++ ... .+...|..+...+...|+.++|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888754 34 4677888888888999999998888865 223 4566788888889999999999999999999
Q ss_pred cCCCCcchHHH
Q 039715 642 FEPEDEATHVL 652 (805)
Q Consensus 642 ~~p~~~~~~~~ 652 (805)
+.|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99988766543
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=2.3e-12 Score=125.76 Aligned_cols=191 Identities=15% Similarity=0.082 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 039715 410 VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMY 489 (805)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 489 (805)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+...|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444444555555555555555544321 1122233333333334444444444444333332 22334444444444
Q ss_pred Hhc-----------CCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039715 490 AKC-----------GSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC 555 (805)
Q Consensus 490 ~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 555 (805)
.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++.++.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 444 555555555555442 244555555555666666666666666655544 4445555555555
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
...|++++|+..|+.+.+. .| +...+..+..++.+.|++++|.+.+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5566666666666555532 33 3445555555555555555555555543
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=2.8e-12 Score=140.20 Aligned_cols=334 Identities=9% Similarity=-0.047 Sum_probs=196.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 039715 313 FMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGL---DLGNQIHSLVVRVGLLSDVFVSNALMDVYA 389 (805)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 389 (805)
.+...+.+.|++++|+.+|++..+.| +...+..+...+...|+. ++|...++...+. +...+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35666777888888888888887765 233333444445556666 7888888777754 4445566666455
Q ss_pred hcC-----ChHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChHH---HHHHHHHHhhcCCCCChhhHHHHHHHHhccCCc
Q 039715 390 KCG-----RMENSVELFAESPKR-NHVTWNTMIVGYVQLGEVGK---AMIMFSKMLEEQVPATEVTYSSVLRACASLAAL 460 (805)
Q Consensus 390 ~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 460 (805)
..| +.++|...|++..++ +...+..|...|...+..++ +.+.+.+....| +......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 544 667788777765443 44567777777777655433 444444444433 234555566666666656
Q ss_pred hhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC---CHHHHHHHhhhcCC---CCHhHHHHHHHHHHhC----CChHHHH
Q 039715 461 EPGMQVHCLTVKANYDMDVVVANALIDMYAKCG---SITDARLVFDMMND---WNEVSWNAMISGYSMH----GLSAEVL 530 (805)
Q Consensus 461 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~ 530 (805)
+.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+ .+...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 555554333333322334447777888888888 78888888877653 2444446677766544 6788888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcC-----CHHHHHH
Q 039715 531 KVFDLMQQRGWRPNNLTFVGVLSA-C--SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAG-----HLDKAAK 602 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~eA~~ 602 (805)
..|++.. .| +...+..+... + ...|+.++|..+|++..+. | +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 8888876 33 33445555544 3 4577888888888877643 3 5666777777776 45 8888888
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCChHHHhh
Q 039715 603 LIEGIPFQPSVMIWRALLGACII----HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM----ARSWEKAAS 668 (805)
Q Consensus 603 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~ 668 (805)
+|++.. ..++..+..|...|.. ..+.++|...++++.+ +.++.+...|+.+|.. ..+.++|..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 888777 5566777777766654 2378888888888776 3456777888888775 335555544
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=1.1e-12 Score=141.63 Aligned_cols=257 Identities=11% Similarity=0.012 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC-------C--ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-CChhhHHH
Q 039715 380 VSNALMDVYAKCGRMENSVELFAESPK-------R--NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVP-ATEVTYSS 449 (805)
Q Consensus 380 ~~~~Li~~y~~~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ 449 (805)
++..+...|...|++++|...|++... + ...+|..+...|...|++++|+..|++..+.... ++.
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 123 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK----- 123 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-----
Confidence 344455555555555555555443211 0 1335666777777777777777777776542100 010
Q ss_pred HHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC--------------------HHHHHHHhhhcCC--
Q 039715 450 VLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGS--------------------ITDARLVFDMMND-- 507 (805)
Q Consensus 450 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~--------------------~~~A~~~~~~~~~-- 507 (805)
.....++..+...|...|+ +++|.+.|++...
T Consensus 124 --------------------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 124 --------------------------VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0012234444455555555 5555555544321
Q ss_pred -----C--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 039715 508 -----W--NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW-RPN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANY 575 (805)
Q Consensus 508 -----~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 575 (805)
+ ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|..+++......
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 1 234677777888888888888888887765210 122 2267777778888888888888888876432
Q ss_pred CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 576 GIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 576 ~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
.-.++ ...+..++..|.+.|++++|.+.+++. +..++ ..++..+...|...|++++|...+++++++.
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11112 457778888899999999999888765 11122 4578888999999999999999999999874
Q ss_pred C------CCcchHHHHHHHHHhcCChHHHh
Q 039715 644 P------EDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 644 p------~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
+ ....++..++.+|...|+...+.
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 3 33567888999999999876543
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=1.5e-11 Score=120.33 Aligned_cols=207 Identities=13% Similarity=0.026 Sum_probs=148.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHH
Q 039715 408 NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALID 487 (805)
Q Consensus 408 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 487 (805)
+...|..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHH
Confidence 34456666667777777777777776665532 223345556666
Q ss_pred HHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHH
Q 039715 488 MYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMH-GLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLE 562 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 562 (805)
.|...|++++|.+.|+++. ..+...|..++..|... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6667777777777776654 23566777788888888 888888888888877333444 346777777788888888
Q ss_pred HHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039715 563 QGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ--PSVMIWRALLGACIIHNNVEIGRLSAQH 638 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 638 (805)
+|..+++.+.+. .| +...+..++..|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.|...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 888888888754 34 4677888888888888888888888765 222 4566777777778889999999999999
Q ss_pred HhccCCCCcchHHHH
Q 039715 639 ILDFEPEDEATHVLL 653 (805)
Q Consensus 639 ~~~~~p~~~~~~~~l 653 (805)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 998999887776554
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=1.9e-11 Score=123.88 Aligned_cols=241 Identities=8% Similarity=0.016 Sum_probs=175.5
Q ss_pred hhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh----hhHHHHH
Q 039715 343 QFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK--RNH----VTWNTMI 416 (805)
Q Consensus 343 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~----~~~~~li 416 (805)
...+......+...|+++.|...++.+++.. +.+..++..+...|...|++++|...|++..+ ++. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445666778899999999999999999875 44566888899999999999999999987544 222 2489999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 039715 417 VGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSIT 496 (805)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 496 (805)
..|...|++++|+..|++..+.. |+... ++..+...|.+.|+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~----------------------------------~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD--TTRLD----------------------------------MYGQIGSYFYNKGNFP 125 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCTH----------------------------------HHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--cccHH----------------------------------HHHHHHHHHHHccCHH
Confidence 99999999999999999998753 33211 1344566677778888
Q ss_pred HHHHHhhhcCC---CCHhHHHHHH-HHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCC---HHHHHHHH
Q 039715 497 DARLVFDMMND---WNEVSWNAMI-SGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGL---LEQGEAYF 568 (805)
Q Consensus 497 ~A~~~~~~~~~---~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~ 568 (805)
+|.+.|++..+ .+...|..+. ..|. .+++++|++.|+++.+. .|+ ...+..+..++...|+ .++|...+
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 202 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYY 202 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence 88888887764 2566777777 4444 45888888888888884 454 4566667777777777 77788888
Q ss_pred HHHHHhcCCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 569 KSMVANYGIEPCI------EHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 569 ~~m~~~~~~~p~~------~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
+++.+...-.|+. ..|..+...|.+.|++++|.+.++++ ...| +...+..+....
T Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 203 EKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 8877654333442 57777888888899999999988866 2334 455555554443
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.43 E-value=6.9e-12 Score=125.47 Aligned_cols=188 Identities=8% Similarity=-0.069 Sum_probs=165.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC 555 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 555 (805)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 5677888899999999999999999876 3477899999999999999999999999999853 23566888888899
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a 632 (805)
...|++++|..+++++.. .+..| +...+..++..|.+.|++++|.+.++++ ... .+...|..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999885 23556 4678889999999999999999999876 223 3578899999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 633 RLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 633 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...++++++..|++...+..++.+|...|++++|.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999999999999999999999976
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=1e-12 Score=144.71 Aligned_cols=187 Identities=6% Similarity=-0.079 Sum_probs=159.0
Q ss_pred CcHhHHHHHHHHHHhcCCH-HHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSI-TDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVL 552 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 552 (805)
.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|...|++++|++.|++.++ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3556666777777777777 777777776652 3577888888899999999999999999988 568877888888
Q ss_pred HHHHcC---------CCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhc--------CCHHHHHHHHHcC-CCCC--
Q 039715 553 SACSNG---------GLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRA--------GHLDKAAKLIEGI-PFQP-- 611 (805)
Q Consensus 553 ~a~~~~---------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--------g~~~eA~~~~~~~-~~~p-- 611 (805)
.++... |++++|+..|+++.+. .| +...|..++.+|.+. |++++|++.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 888888 9999999999998854 45 577888999999888 9999999999876 2345
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 612 --SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 612 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...|..+..+|...|++++|+..++++++++|+++.++..++.++...|++++|.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999987
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=2.6e-11 Score=123.03 Aligned_cols=214 Identities=9% Similarity=-0.057 Sum_probs=186.8
Q ss_pred ChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHhhhcCCC-CHhHHHHHH
Q 039715 443 TEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK----CGSITDARLVFDMMNDW-NEVSWNAMI 517 (805)
Q Consensus 443 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li 517 (805)
+..++..+...+...|++++|...+....+. .+...+..+..+|.. .|++++|.+.|++..+. +..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3456677778888999999999999999984 356788889999999 99999999999988643 788999999
Q ss_pred HHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 518 SGYSM----HGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSN----GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 518 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .|++++|..+|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999965 67788888888988 99999999999999854 3 5677888999
Q ss_pred HHHh----cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh--
Q 039715 590 LLGR----AGHLDKAAKLIEGIPFQPSVMIWRALLGACII----HNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM-- 659 (805)
Q Consensus 590 ~~~~----~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 659 (805)
+|.+ .+++++|.+.+++.-...+...+..+...|.. .+++++|+..++++++..| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999976323467788999999999 9999999999999999876 7789999999999
Q ss_pred --cCChHHHhh
Q 039715 660 --ARSWEKAAS 668 (805)
Q Consensus 660 --~g~~~~a~~ 668 (805)
.|++++|.+
T Consensus 233 ~~~~~~~~A~~ 243 (273)
T 1ouv_A 233 GVTRNEKQAIE 243 (273)
T ss_dssp SSSCCSTTHHH
T ss_pred CcccCHHHHHH
Confidence 999999876
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=1.2e-11 Score=121.03 Aligned_cols=190 Identities=11% Similarity=0.003 Sum_probs=165.7
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
.+..++..+...|...|++++|.+.|+++. ..+...|..++..|...|++++|++.|+++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 356778889999999999999999999876 3467899999999999999999999999999853 235668888889
Q ss_pred HHHcC-CCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCH
Q 039715 554 ACSNG-GLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNV 629 (805)
Q Consensus 554 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 629 (805)
.+... |++++|..+++.+.+ .+..|+ ...+..++..|.+.|++++|.+.++++ ...| +...|..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999986 234453 578889999999999999999999876 2234 578899999999999999
Q ss_pred HHHHHHHHHHhccCC-CCcchHHHHHHHHHhcCChHHHhh
Q 039715 630 EIGRLSAQHILDFEP-EDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 630 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++|...++++++..| +++..+..++.++...|+.++|..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 999999999999999 999999999999999999999866
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.42 E-value=1.5e-12 Score=137.87 Aligned_cols=209 Identities=10% Similarity=0.029 Sum_probs=181.6
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC-HHHHHHHhhhcCC---CCHhHHHHHHHHHH
Q 039715 446 TYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGS-ITDARLVFDMMND---WNEVSWNAMISGYS 521 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~ 521 (805)
.+..+...+...|++++|...+..+++.. +.+..+|+.+..+|.+.|+ +++|+..|+++.. .+...|+.+..+|.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 56677778888999999999999999986 5578899999999999997 9999999999873 47889999999999
Q ss_pred hCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHh-cCCHH
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGR-AGHLD 598 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~-~g~~~ 598 (805)
..|++++|+..|+++++ +.| +...|..+..++...|++++|+..|+++++. .| +...|+.+..+|.+ .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999 566 4568889999999999999999999999954 56 57889999999999 67767
Q ss_pred HH-----HHHHHcC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 599 KA-----AKLIEGI-PFQP-SVMIWRALLGACIIHN--NVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 599 eA-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
+| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 77 4666654 3345 5679999999999888 689999999998 999999999999999999985
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=1e-11 Score=125.88 Aligned_cols=239 Identities=12% Similarity=-0.057 Sum_probs=151.0
Q ss_pred CCChhHHHHHHHHHHHCCCCC---ChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHH
Q 039715 321 TDLSIDAVELFCRMRQAFVAP---NQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENS 397 (805)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 397 (805)
.|++++|+..|+++.+..... +..++..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 466777777777777653211 24456666667777777777777777777765 44566777788888888888888
Q ss_pred HHHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcC
Q 039715 398 VELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKAN 474 (805)
Q Consensus 398 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 474 (805)
...|++..+ .+...|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888876542 35677888888888888888888888888774 3554444444455566677777777776666653
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCC-------HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 039715 475 YDMDVVVANALIDMYAKCGSITDARLVFDMMNDWN-------EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLT 547 (805)
Q Consensus 475 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 547 (805)
+++...+ .++..+...++.++|.+.+++....+ ...|..+...|...|++++|+..|+++.+ ..|+..
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~- 249 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNF- 249 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTC-
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchhH-
Confidence 2233333 35666666677777777777665432 35566666666666666666666666666 344321
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYF 568 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~ 568 (805)
.....++...|++++|++.+
T Consensus 250 -~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 -VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHhhHHHH
Confidence 11122344445555555443
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.42 E-value=2.4e-12 Score=139.34 Aligned_cols=222 Identities=12% Similarity=-0.007 Sum_probs=136.1
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHc----C-CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---------CHhH
Q 039715 447 YSSVLRACASLAALEPGMQVHCLTVKA----N-YDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---------NEVS 512 (805)
Q Consensus 447 ~~~ll~a~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~ 512 (805)
+..+...+...|++++|...+..+++. + .+....++..+...|...|++++|...|++..+. ...+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 333444444444444444444443321 1 1122345566666677777777777766655421 2346
Q ss_pred HHHHHHHHHhCCC-----------------hHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 039715 513 WNAMISGYSMHGL-----------------SAEVLKVFDLMQQR----GWRPN-NLTFVGVLSACSNGGLLEQGEAYFKS 570 (805)
Q Consensus 513 ~~~li~~~~~~g~-----------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 570 (805)
|..+...|...|+ +++|++.+++..+. +-.|. ..++..+...+...|++++|..++++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6667777777777 77777777765542 11111 23566666677778888888888777
Q ss_pred HHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039715 571 MVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS----VMIWRALLGACIIHNNVEIGRLSAQH 638 (805)
Q Consensus 571 m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 638 (805)
..+...-.++ ...+..++..|...|++++|.+.+++. +...+ ..+|..+...+...|++++|+..+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7643211112 236677777888888888888877654 11111 35677777788888888888888888
Q ss_pred HhccCCCC------cchHHHHHHHHHhcCChHHHhh
Q 039715 639 ILDFEPED------EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 639 ~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++++.++. ...+..++.+|...|++++|.+
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 88765432 3467778888888888888866
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=2.7e-12 Score=138.42 Aligned_cols=258 Identities=11% Similarity=0.031 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCC---hhhHHHHHHHHhccCCchhHHHHHHHHHHc----CCC-CcHhHH
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPAT---EVTYSSVLRACASLAALEPGMQVHCLTVKA----NYD-MDVVVA 482 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 482 (805)
.+......+...|++++|+..|++..+...... ...+..+...+...|+++.|...+..+.+. +.. ....++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 444455555666666666666666655421100 124445555566666666666665554432 111 124567
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCC-----C----HhHHHHHHHHHHhCCC--------------------hHHHHHHH
Q 039715 483 NALIDMYAKCGSITDARLVFDMMNDW-----N----EVSWNAMISGYSMHGL--------------------SAEVLKVF 533 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~--------------------~~~A~~l~ 533 (805)
..+...|...|++++|...|++..+. + ..+|..+...|...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 78888999999999999988877532 2 4488889999999999 99999999
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHH
Q 039715 534 DLMQQR----GWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 534 ~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
++..+. +-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..++..|.+.|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 987652 11222 236777888899999999999999998754322232 347888999999999999999999
Q ss_pred HcC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCChHHHhh
Q 039715 605 EGI----PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED------EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 605 ~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++. +..++ ..++..++..|...|++++|+..+++++++.++. ...+..++.+|...|++++|.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 865 11122 4578899999999999999999999999876543 5578899999999999999987
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=5e-12 Score=125.55 Aligned_cols=189 Identities=9% Similarity=0.049 Sum_probs=148.6
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLS 553 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 553 (805)
.....+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456677888899999999999999998864 367899999999999999999999999999853 235668888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCCHHH
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF-QPSVMIWRALLGACIIHNNVEI 631 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 631 (805)
.+...|++++|..+++++.+.. ..+...+..++..|.+.|++++|.+.++++ .. ..+...|..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998642 336778899999999999999999999876 22 3467889999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 632 GRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 632 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|+..++++++..|+++..+..++.+|...|++++|.+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999999999999999999999999977
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=3.2e-12 Score=133.63 Aligned_cols=190 Identities=11% Similarity=0.015 Sum_probs=113.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HhHHHHHHHHHHhCCC--------------------hHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMND-----WN----EVSWNAMISGYSMHGL--------------------SAEV 529 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 529 (805)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34455566666666666666666665432 11 2356666666666666 6667
Q ss_pred HHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHH
Q 039715 530 LKVFDLMQQR----GWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 530 ~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA 600 (805)
++.+++..+. +-.|. ..++..+...+...|++++|..+++...+...-.++ ...+..++..|.+.|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6666665431 11111 224555666666777777777777766533211111 23566667777777777777
Q ss_pred HHHHHcC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCChHHH
Q 039715 601 AKLIEGI----PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED------EATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 601 ~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 666 (805)
.+.+++. +..++ ..++..+...+...|++++|...+++++++.|+. ..++..++.+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7776644 11112 3456667777777777777777777777664432 33566777777777777777
Q ss_pred hh
Q 039715 667 AS 668 (805)
Q Consensus 667 ~~ 668 (805)
.+
T Consensus 323 ~~ 324 (338)
T 3ro2_A 323 MH 324 (338)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=1.7e-11 Score=116.07 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=82.3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLS 553 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~ 553 (805)
+..+|..|...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..+++.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 344555555555555555555555555441 24455555555555555555555555555552 22 2233444444
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVE 630 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 630 (805)
.+...++++.+...+...... .| +...+..++..|.+.|++++|++.|++. ...| +..+|..++.+|...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 455555555555555555432 22 3344455555555555555555555433 1122 3444555555555555555
Q ss_pred HHHHHHHHHhccCCC
Q 039715 631 IGRLSAQHILDFEPE 645 (805)
Q Consensus 631 ~a~~~~~~~~~~~p~ 645 (805)
+|+..++++++++|+
T Consensus 159 ~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 159 EAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhCCcc
Confidence 555555555555553
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=2.6e-09 Score=120.61 Aligned_cols=417 Identities=9% Similarity=0.004 Sum_probs=285.5
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCC---hHHHHHHHhh
Q 039715 226 ALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGE---ISNARRIFEE 302 (805)
Q Consensus 226 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~ 302 (805)
.+..|++.+.... -|..+|..++..+...+.++.++.+++.+++. ++.....|...+..-.+.|. ++.+..+|++
T Consensus 51 ~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3334445554443 47788999999999899999999999999987 46677889889998889898 9999999998
Q ss_pred CCC-----CCcccHHHHHHHHHhCCCh----h----HHHHHHHHHHH-CCC-CCCh-hHHHHHHHHHh---------ccC
Q 039715 303 MPK-----KDVIPWSFMIARYAQTDLS----I----DAVELFCRMRQ-AFV-APNQ-FTFVSVLQACA---------TME 357 (805)
Q Consensus 303 ~~~-----~~~~~~~~li~~~~~~g~~----~----~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~---------~~~ 357 (805)
... +++..|..-+.-..+.++. + ...++|+..+. .|. .|+. ..|...+.-.. ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 754 4555687777665555443 2 34467776554 466 5654 45555554432 233
Q ss_pred CchHHHHHHHHHHHhCCCccHHHHHHHHHHHHh-------------cCChHHHHHHHhc-------CCC-----------
Q 039715 358 GLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAK-------------CGRMENSVELFAE-------SPK----------- 406 (805)
Q Consensus 358 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-------------~g~~~~A~~~f~~-------~~~----------- 406 (805)
+++.+..+|..++......-..+|......-.. ..+++.|...+.+ +..
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 467788888888853222222333222211111 1123334444432 111
Q ss_pred ---C--C------hhhHHHHHHHHHHcC-------ChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHH-HHH
Q 039715 407 ---R--N------HVTWNTMIVGYVQLG-------EVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGM-QVH 467 (805)
Q Consensus 407 ---~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~ 467 (805)
| + ...|...+.---.++ ..+.+..+|++.+..- +-+...|.....-+...|+.+.|. .++
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0 0 134666665433332 1234567788887652 335556667777777889999996 999
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC-------------C------------CHhHHHHHHHHHHh
Q 039715 468 CLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND-------------W------------NEVSWNAMISGYSM 522 (805)
Q Consensus 468 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~------------~~~~~~~li~~~~~ 522 (805)
+..+... +.+...+-.++..+-+.|++++|.++|+++.+ | ....|...+....+
T Consensus 368 ~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 368 KLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence 9998754 56777888899999999999999999998764 2 12368888888888
Q ss_pred CCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 039715 523 HGLSAEVLKVFDLMQQR-GWRPNNLTFVGVLSACSNG-GLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA 600 (805)
.|..+.|.++|.+..+. + .+....|......-.+. ++.+.|..+|+...+.++ -+...+...++...+.|+.+.|
T Consensus 447 ~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 447 IQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999885 2 12233444333332333 459999999999997742 3556677889999999999999
Q ss_pred HHHHHcC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 601 AKLIEGI-PFQP----SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 601 ~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
..+|++. ...| ....|...+..-..+|+.+.+..+.+++.+..|+++..
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 9999975 2223 24689999999999999999999999999999987543
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.38 E-value=2.9e-12 Score=138.68 Aligned_cols=268 Identities=10% Similarity=-0.012 Sum_probs=173.9
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCcc---HHHHHHHHHHHHhcCChHHHHHHHhcCCC---------CChhhHH
Q 039715 346 FVSVLQACATMEGLDLGNQIHSLVVRVGLLSD---VFVSNALMDVYAKCGRMENSVELFAESPK---------RNHVTWN 413 (805)
Q Consensus 346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~ 413 (805)
+..+...+...|++++|...++.+++.+.... ..++..+...|...|++++|...|++..+ .....|.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444456667777777777777776542211 13556666666666666666666654321 1223455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcC-CCCcHhHHHHHHHHHHhc
Q 039715 414 TMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKAN-YDMDVVVANALIDMYAKC 492 (805)
Q Consensus 414 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~ 492 (805)
.+...|...|++++|+..|++...... +.+ .+....++..+...|...
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHHc
Confidence 556666666666666666665543200 001 011234556666667777
Q ss_pred CC-----------------HHHHHHHhhhcCC-------C--CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC-
Q 039715 493 GS-----------------ITDARLVFDMMND-------W--NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR-PN- 544 (805)
Q Consensus 493 g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~- 544 (805)
|+ +++|.+.|++..+ + ....|..+...|...|++++|+..|++..+.... ++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 77 6777666665432 1 2347778888888889999999888887763111 12
Q ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHcCC----CCCC-
Q 039715 545 ---NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP----CIEHYTSMVSLLGRAGHLDKAAKLIEGIP----FQPS- 612 (805)
Q Consensus 545 ---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~- 612 (805)
..++..+...+...|++++|..++++......-.. ....+..++.+|.+.|++++|.+.+++.- ..++
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 22677778888899999999999988775421111 14677888899999999999999988651 1112
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 613 ---VMIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 613 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
..++..+...|...|++++|...+++++++.+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 34788888999999999999999999999877
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=3.9e-11 Score=113.52 Aligned_cols=155 Identities=10% Similarity=0.021 Sum_probs=138.0
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTS 586 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 586 (805)
+...|..+...|...|++++|++.|++.++ +.|+ ..++..+..++...|++++|...++..... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 567899999999999999999999999998 4665 557888889999999999999999998854 34 5677888
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWE 664 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 664 (805)
+...+...+++++|.+.+++. ...| +...|..++..+...|++++|+..++++++++|+++.++..+|.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 889999999999999999866 2234 57789999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 039715 665 KAAS 668 (805)
Q Consensus 665 ~a~~ 668 (805)
+|.+
T Consensus 159 ~A~~ 162 (184)
T 3vtx_A 159 EAVK 162 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=7.2e-12 Score=143.34 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=131.8
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTS 586 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 586 (805)
+..+|+.|...|.+.|++++|++.|++.++ +.|+ ..++..+..++.+.|++++|+..|++.++ +.| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788888888888888888888888888 5665 45788888888888899999888888874 456 4678888
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWE 664 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 664 (805)
++.+|.+.|++++|++.|++. .+.| +...|..++.+|...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 889999999999999888865 3445 46789999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 039715 665 KAAS 668 (805)
Q Consensus 665 ~a~~ 668 (805)
+|.+
T Consensus 163 ~A~~ 166 (723)
T 4gyw_A 163 DYDE 166 (723)
T ss_dssp THHH
T ss_pred HHHH
Confidence 9876
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=4.4e-10 Score=116.13 Aligned_cols=219 Identities=9% Similarity=0.027 Sum_probs=166.3
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHh-------ccCCc-------hhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 039715 426 GKAMIMFSKMLEEQVPATEVTYSSVLRACA-------SLAAL-------EPGMQVHCLTVKANYDMDVVVANALIDMYAK 491 (805)
Q Consensus 426 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 491 (805)
++|+.+|++..... +-+...|..++..+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776542 223334555544443 34665 7888888888874224466788999999999
Q ss_pred cCCHHHHHHHhhhcCC--C-CHh-HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCCHHHHHH
Q 039715 492 CGSITDARLVFDMMND--W-NEV-SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC-SNGGLLEQGEA 566 (805)
Q Consensus 492 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 566 (805)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998864 2 343 89999999999999999999999999853 22344454443332 23799999999
Q ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039715 567 YFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQP--SVMIWRALLGACIIHNNVEIGRLSAQHIL 640 (805)
Q Consensus 567 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 640 (805)
+|+...+.. .-+...|..++..+.+.|++++|..+|++. ++.| ....|..++.....+|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998653 225788999999999999999999999866 2344 46789999999999999999999999999
Q ss_pred ccCCCCcc
Q 039715 641 DFEPEDEA 648 (805)
Q Consensus 641 ~~~p~~~~ 648 (805)
+..|+++.
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 99998654
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=2.4e-11 Score=126.89 Aligned_cols=134 Identities=11% Similarity=-0.032 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGW-RPN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IE 582 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 582 (805)
.+..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+++.......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455566666666666666666666554210 011 125556666667777777777777766543211111 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
.+..++..|.+.|++++|.+.++++ +..++ ..+|..+...|...|++++|...+++++++.++
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6677777788888888887777654 11112 346788888899999999999999999988764
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=5.2e-09 Score=118.24 Aligned_cols=225 Identities=8% Similarity=-0.001 Sum_probs=113.8
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHH-HHHhcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 039715 363 NQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSV-ELFAESPK---RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEE 438 (805)
Q Consensus 363 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~-~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 438 (805)
..+|+.++... +.+..+|-..+..+.+.|+.++|. .+|++... .+...|-..+...-+.|++++|.++|+++...
T Consensus 329 ~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 329 TYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455555432 334455555555555555555554 55554321 23344555555555556666666666555542
Q ss_pred C---------CCCC------------hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHH
Q 039715 439 Q---------VPAT------------EVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG-SIT 496 (805)
Q Consensus 439 g---------~~p~------------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~ 496 (805)
. -.|+ ...|...+....+.|.++.|+.+|..+.+.-......+|...+.+-.++| +.+
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e 487 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTK 487 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHH
Confidence 1 0121 12345555555556666666666666665411111222322233333333 366
Q ss_pred HHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 039715 497 DARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN--NLTFVGVLSACSNGGLLEQGEAYFKSM 571 (805)
Q Consensus 497 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m 571 (805)
.|.++|+...+ .+...|...+.-....|+.+.|..+|++.......++ ...|...+.--...|+.+.+..+.+++
T Consensus 488 ~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 488 TACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666552 2455566666656666666666666666665422111 224555555555667777777777766
Q ss_pred HHhcCCCCChHHHHHHHHHH
Q 039715 572 VANYGIEPCIEHYTSMVSLL 591 (805)
Q Consensus 572 ~~~~~~~p~~~~~~~li~~~ 591 (805)
.+.+ |+......+++-|
T Consensus 568 ~~~~---P~~~~~~~f~~ry 584 (679)
T 4e6h_A 568 FEKF---PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHS---TTCCHHHHHHHHT
T ss_pred HHhC---CCCcHHHHHHHHh
Confidence 6542 4333333344444
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=6.7e-11 Score=126.62 Aligned_cols=230 Identities=7% Similarity=-0.039 Sum_probs=158.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-CCCC----hhhHHHHHHHHhccCCchhHHHHHHHHHHcC--C----CCcHhHHH
Q 039715 415 MIVGYVQLGEVGKAMIMFSKMLEEQ-VPAT----EVTYSSVLRACASLAALEPGMQVHCLTVKAN--Y----DMDVVVAN 483 (805)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 483 (805)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+....+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3344555566666666666654421 0111 1244555555556666666666655554421 0 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCC-----C----HhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHH
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDW-----N----EVSWNAMISGYSMHGLSAEVLKVFDLMQQR----GWRPN-NLTFV 549 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 549 (805)
.+...|...|++++|.+.|++..+. + ..+|+.+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888888899999998888876521 1 247888999999999999999999988762 22243 44788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCC---HHHHHHHHHcCCCCCCH-HHHHHHHHH
Q 039715 550 GVLSACSNGGLLEQGEAYFKSMVANYGIEPC---IEHYTSMVSLLGRAGH---LDKAAKLIEGIPFQPSV-MIWRALLGA 622 (805)
Q Consensus 550 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~eA~~~~~~~~~~p~~-~~~~~l~~~ 622 (805)
.+..++...|++++|..++++..+...-..+ ...+..+..+|...|+ +++|..++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8888899999999999999987753211112 2345678888889998 89999999988644443 467788888
Q ss_pred HHHcCCHHHHHHHHHHHhccCC
Q 039715 623 CIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 623 ~~~~g~~~~a~~~~~~~~~~~p 644 (805)
|...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=1.1e-10 Score=114.66 Aligned_cols=205 Identities=11% Similarity=0.043 Sum_probs=143.9
Q ss_pred ChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHH
Q 039715 443 TEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISG 519 (805)
Q Consensus 443 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 519 (805)
|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++..+ .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 44566677777788888888888888888776435666666688888888888888888877652 255677778888
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC---hHHHHHHH
Q 039715 520 YSMHGLSAEVLKVFDLMQQRGWRPN-N-------LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC---IEHYTSMV 588 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 588 (805)
|...|++++|+..|++..+ +.|+ . ..|..+...+...|++++|+..|+++. .+.|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 8888888888888888877 3454 2 345666667777888888888887776 45565 45677777
Q ss_pred HHHHhcCCH--HHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 039715 589 SLLGRAGHL--DKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM 659 (805)
Q Consensus 589 ~~~~~~g~~--~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 659 (805)
.+|...|+. ++|..+. ..+...+..+. ....+.+++|+..++++++++|+++.+...|+.+...
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 777665543 3332221 12333333332 3345667999999999999999999999888877543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=8.5e-12 Score=129.01 Aligned_cols=235 Identities=12% Similarity=0.098 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhc-------CCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHc------C-CC
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEE-------QVPATEVTYSSVLRACASLAALEPGMQVHCLTVKA------N-YD 476 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~-~~ 476 (805)
+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. + .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444444444444444444331 11111223344444444445555554444444432 1 12
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc------
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMNDW-----------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR------ 539 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 539 (805)
....++..+...|...|++++|.+.|+++.+. ....|..+...|...|++++|++.|+++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 23456667777777777777777777765421 3446777888888888888888888887763
Q ss_pred CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------CCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHH
Q 039715 540 GWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANY------GIEPC-------IEHYTSMVSLLGRAGHLDKAAKLIE 605 (805)
Q Consensus 540 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-------~~~~~~li~~~~~~g~~~eA~~~~~ 605 (805)
+-.|+ ..++..+...+...|++++|..+++++.+.. ...+. ...+..+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 22333 2356777778888888888888888877431 11111 1222333344455566666666666
Q ss_pred cCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 606 GIP-FQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 606 ~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
+.. ..| +..+|..++..|...|++++|+..+++++++.|+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 553 233 3457888999999999999999999999988774
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=1e-10 Score=125.27 Aligned_cols=218 Identities=9% Similarity=-0.016 Sum_probs=169.5
Q ss_pred HHHHHhccCCchhHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHhhhcCC-----C-----CHhHHH
Q 039715 450 VLRACASLAALEPGMQVHCLTVKA----NYDM-DVVVANALIDMYAKCGSITDARLVFDMMND-----W-----NEVSWN 514 (805)
Q Consensus 450 ll~a~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 514 (805)
....+...|++++|...+..+.+. +-++ ...++..+...|...|++++|...+++..+ . ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455678899999999999999874 2111 346788999999999999999999887752 1 245788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---CCCC-ChHHHH
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQQRGWR-PN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANY---GIEP-CIEHYT 585 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~ 585 (805)
.+...|...|++++|+..|++..+...+ ++ ..++..+...+...|++++|..+|++..+.. +..| ....+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 9999999999999999999998763111 22 2368888889999999999999999987521 2213 356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC----C--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGIP----F--QPS-VMIWRALLGACIIHNN---VEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~~----~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
.++..|.+.|++++|.+.+++.- . .|. ...+..+...+...|+ .++|+..+++. ...|.....+..|+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 99999999999999999998651 1 222 2235667777888898 78888888777 444556678889999
Q ss_pred HHHhcCChHHHhh
Q 039715 656 IYAMARSWEKAAS 668 (805)
Q Consensus 656 ~~~~~g~~~~a~~ 668 (805)
+|...|++++|.+
T Consensus 348 ~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 348 YYHERKNFQKASA 360 (383)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHCCCHHHHHH
Confidence 9999999999976
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=1.9e-11 Score=126.42 Aligned_cols=224 Identities=15% Similarity=0.102 Sum_probs=160.6
Q ss_pred hhHHHHHHHHhccCCchhHHHHHHHHHHc-------CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---------
Q 039715 445 VTYSSVLRACASLAALEPGMQVHCLTVKA-------NYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW--------- 508 (805)
Q Consensus 445 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------- 508 (805)
.++..+...+...|++++|..++..+.+. ..+....++..+...|...|++++|...|++....
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46777888899999999999999988874 33445677888999999999999999999877521
Q ss_pred --CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----
Q 039715 509 --NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR------GWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANY---- 575 (805)
Q Consensus 509 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---- 575 (805)
...+|..+...|...|++++|+..|+++.+. +-.|+ ...+..+...+...|++++|..+++.+.+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 3557888999999999999999999998874 22233 3467778888999999999999999887541
Q ss_pred -CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC----------CCCC-------HHHHHHHHHHHHHcCCHHHHHHHH
Q 039715 576 -GIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP----------FQPS-------VMIWRALLGACIIHNNVEIGRLSA 636 (805)
Q Consensus 576 -~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~----------~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~ 636 (805)
+..| ....+..++.+|.+.|++++|.+.++++- ..+. ...+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1123 34678888999999999999999987651 1111 112223333344556666777788
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 637 QHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 637 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+++.+..|+.+.++..++.+|...|++++|.+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888889999999999999999999999976
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.21 E-value=6.4e-11 Score=130.27 Aligned_cols=169 Identities=7% Similarity=0.005 Sum_probs=149.8
Q ss_pred HHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHH
Q 039715 495 ITDARLVFDMMN---DWNEVSWNAMISGYSMHGLS-AEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFK 569 (805)
Q Consensus 495 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 569 (805)
+++|.+.++... ..+...|..+...|...|++ ++|++.|++.++. .|+ ...+..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666554 34788999999999999999 9999999999984 565 6688999999999999999999999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc--------CCHH
Q 039715 570 SMVANYGIEPCIEHYTSMVSLLGRA---------GHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIH--------NNVE 630 (805)
Q Consensus 570 ~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~ 630 (805)
+.. .+.|+...+..+..+|.+. |++++|++.+++. ...| +...|..++.+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 5678888999999999999 9999999999976 2334 578999999999998 9999
Q ss_pred HHHHHHHHHhccCC---CCcchHHHHHHHHHhcCChHHHhh
Q 039715 631 IGRLSAQHILDFEP---EDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 631 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|+..++++++++| +++..|..++.+|...|++++|.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~ 279 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE 279 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999 999999999999999999999988
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=3.9e-09 Score=112.27 Aligned_cols=187 Identities=12% Similarity=0.016 Sum_probs=121.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC----------C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC--C--CHH
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMND----------W-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR--P--NNL 546 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~ 546 (805)
...+...|...|++++|...+++... + ....+..+...+...|++++|...+++..+.... | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45566677777777777777766542 1 1235566777778888888888888887763221 1 123
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHH-----HHHHHHHhcCCHHHHHHHHHcCC-CCCC-----HHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYT-----SMVSLLGRAGHLDKAAKLIEGIP-FQPS-----VMI 615 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~eA~~~~~~~~-~~p~-----~~~ 615 (805)
++..+...+...|++++|..+++.......-......+. .++..+...|++++|...+++.. ..|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566666777788888888888887764321111111111 23345678888888888887662 1121 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCChHHHhh
Q 039715 616 WRALLGACIIHNNVEIGRLSAQHILDFEPED------EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 616 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+..+...+...|+.++|...++++++..+.. ...+..++.+|...|++++|..
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 314 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 314 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6677777888888888888888887754321 2366777888888888888866
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=6.5e-11 Score=116.42 Aligned_cols=152 Identities=8% Similarity=-0.022 Sum_probs=109.3
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSM 587 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 587 (805)
|+..|..+...+...|++++|+..|++.++....++...+..+..++...|++++|+..|++..+ ..| +...|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHH
Confidence 45666677777777777777777777777754225666666666777777777777777777763 345 34567777
Q ss_pred HHHHHhcCCHHHHHHHHHcC-CCCC-CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHHH
Q 039715 588 VSLLGRAGHLDKAAKLIEGI-PFQP-SV-------MIWRALLGACIIHNNVEIGRLSAQHILDFEPE--DEATHVLLSNI 656 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 656 (805)
+.+|.+.|++++|++.+++. ...| +. ..|..++..+...|++++|+..++++++++|+ ++.++..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 77777777777777777755 1223 33 45777777788888888888888888888888 78888888888
Q ss_pred HHhcCCh
Q 039715 657 YAMARSW 663 (805)
Q Consensus 657 ~~~~g~~ 663 (805)
|...|+.
T Consensus 163 ~~~~~~~ 169 (228)
T 4i17_A 163 FYNNGAD 169 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888876
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=1.3e-09 Score=102.64 Aligned_cols=168 Identities=10% Similarity=-0.027 Sum_probs=135.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSAC 555 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 555 (805)
...+..+...|...|++++|.+.|+++.+ .+...|..++..+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34567778888999999999999998874 367788889999999999999999999998852 23556777888888
Q ss_pred HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 039715 556 SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF-QPSVMIWRALLGACIIHNNVEIGR 633 (805)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~ 633 (805)
...|++++|..+++.+.+. .+.+...+..++..|.+.|++++|.+.++++ .. ..+...|..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999988854 2335677888888888999999998888865 22 235678888888888899999999
Q ss_pred HHHHHHhccCCCCcch
Q 039715 634 LSAQHILDFEPEDEAT 649 (805)
Q Consensus 634 ~~~~~~~~~~p~~~~~ 649 (805)
..+++++++.|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999998888876543
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=4.6e-09 Score=111.96 Aligned_cols=229 Identities=8% Similarity=-0.012 Sum_probs=159.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCC-CCC----hhhHHHHHHHHhccCCchhHHHHHHHHHHcC--C---C-CcHhHHH
Q 039715 415 MIVGYVQLGEVGKAMIMFSKMLEEQV-PAT----EVTYSSVLRACASLAALEPGMQVHCLTVKAN--Y---D-MDVVVAN 483 (805)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~ 483 (805)
....+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+....+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566777777777776654211 122 2245556666667777777776666655421 0 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC-----C----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCHHHHHH
Q 039715 484 ALIDMYAKCGSITDARLVFDMMND-----W----NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR----GWRPNNLTFVG 550 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ 550 (805)
.+...|...|++++|.+.|++..+ . ...+++.+...|...|++++|+..|++..+. +-+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 788888888998888888877653 1 2347788888999999999999999988761 11222457778
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCC---HHHHHHHHHcCCCCCCH-HHHHHHHHHH
Q 039715 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPC---IEHYTSMVSLLGRAGH---LDKAAKLIEGIPFQPSV-MIWRALLGAC 623 (805)
Q Consensus 551 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~eA~~~~~~~~~~p~~-~~~~~l~~~~ 623 (805)
+..++.+.|++++|..++++..+...-.++ ...+..+...|...|+ +++|+..+++....|+. ..+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 888899999999999999988865322222 3456677777888888 89999999887644443 3667788889
Q ss_pred HHcCCHHHHHHHHHHHhccC
Q 039715 624 IIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~ 643 (805)
...|++++|...+++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887753
No 80
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.18 E-value=4.1e-09 Score=108.76 Aligned_cols=178 Identities=12% Similarity=0.040 Sum_probs=115.5
Q ss_pred HHHHHHHhcCCC----CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChh--hHHHHHHHHhccCCchhHHHHHH
Q 039715 395 ENSVELFAESPK----RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEV--TYSSVLRACASLAALEPGMQVHC 468 (805)
Q Consensus 395 ~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~ 468 (805)
++|..+|++..+ .+...|..++..+.+.|++++|..+|++..+. .|+.. .|..+...+.+.|++++|..++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 556665554222 23445666666666666666666666666552 34322 45556666666666666666666
Q ss_pred HHHHcCCCCcHhHHHHHHHHHH-hcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCC
Q 039715 469 LTVKANYDMDVVVANALIDMYA-KCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG-WRP 543 (805)
Q Consensus 469 ~~~~~~~~~~~~~~~~li~~y~-~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p 543 (805)
.+++.. +.+..++...+.... ..|++++|.++|++..+ .+...|..++..+.+.|+.++|..+|++.++.. +.|
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 666544 223344444433322 35888888888887752 367788888888888888888888888888853 455
Q ss_pred C--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Q 039715 544 N--NLTFVGVLSACSNGGLLEQGEAYFKSMVANY 575 (805)
Q Consensus 544 ~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 575 (805)
+ ...+..++......|+.++|..+++++.+.+
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 3 4467777777778888899988888888653
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=7.3e-10 Score=104.33 Aligned_cols=156 Identities=12% Similarity=0.051 Sum_probs=136.1
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 3467788889999999999999999998742 235667888888999999999999999999854 2336788899999
Q ss_pred HHHhcCCHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 590 LLGRAGHLDKAAKLIEGI-P-FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 590 ~~~~~g~~~eA~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
.|...|++++|.+.++++ . ...+...|..++..+...|++++|+..++++++..|+++..+..++.+|...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999876 2 23467889999999999999999999999999999999999999999999999999997
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
+
T Consensus 165 ~ 165 (186)
T 3as5_A 165 P 165 (186)
T ss_dssp H
T ss_pred H
Confidence 6
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.14 E-value=1.7e-10 Score=131.90 Aligned_cols=164 Identities=11% Similarity=0.106 Sum_probs=142.4
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 039715 477 MDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVL 552 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 552 (805)
.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|++.|++.++ +.|+ ...+..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 3567889999999999999999999998763 3678999999999999999999999999998 5675 55889999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCH
Q 039715 553 SACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNV 629 (805)
Q Consensus 553 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 629 (805)
.++...|++++|++.|++..+ +.| +...|..++.+|.+.|++++|++.|++. ...| +...|..|+.++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999999884 456 4688999999999999999999999876 3455 467899999999999999
Q ss_pred HHHHHHHHHHhccCCC
Q 039715 630 EIGRLSAQHILDFEPE 645 (805)
Q Consensus 630 ~~a~~~~~~~~~~~p~ 645 (805)
++|++.+++++++.|+
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999999886553
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.13 E-value=1.1e-09 Score=116.92 Aligned_cols=218 Identities=10% Similarity=-0.023 Sum_probs=165.3
Q ss_pred HHHHHhccCCchhHHHHHHHHHHcC--CC---CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC-----C-----CHhHHH
Q 039715 450 VLRACASLAALEPGMQVHCLTVKAN--YD---MDVVVANALIDMYAKCGSITDARLVFDMMND-----W-----NEVSWN 514 (805)
Q Consensus 450 ll~a~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~ 514 (805)
....+...|++++|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ . ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3445678899999999999988642 11 1346788899999999999999998887652 1 245788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC--CCC-ChHHHHH
Q 039715 515 AMISGYSMHGLSAEVLKVFDLMQQRGW-RPN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANYG--IEP-CIEHYTS 586 (805)
Q Consensus 515 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p-~~~~~~~ 586 (805)
.+...|...|++++|++.|++..+..- .++ ..++..+...+...|++++|..+|++..+... ..| ....+..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 999999999999999999999876311 112 23677888889999999999999999876211 223 3567888
Q ss_pred HHHHHHhcCCHHHHHHHHHcC----CC--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCcchHHHHHHH
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI----PF--QPS-VMIWRALLGACIIHNN---VEIGRLSAQHILDFEPEDEATHVLLSNI 656 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 656 (805)
++..|.+.|++++|.+.+++. +. .|. ...+..+...+...|+ .++|+..+++. ...|+....+..+|.+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 999999999999999999865 21 233 3345666666777888 78888777762 3344455677889999
Q ss_pred HHhcCChHHHhh
Q 039715 657 YAMARSWEKAAS 668 (805)
Q Consensus 657 ~~~~g~~~~a~~ 668 (805)
|...|++++|.+
T Consensus 346 y~~~g~~~~A~~ 357 (378)
T 3q15_A 346 FESSCHFEQAAA 357 (378)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHCCCHHHHHH
Confidence 999999999976
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=1.6e-09 Score=110.97 Aligned_cols=174 Identities=7% Similarity=-0.020 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----C----HhHHHHHHHHHHhC-CChHHHHHHHHHHHHcCCCCC-----
Q 039715 480 VVANALIDMYAKCGSITDARLVFDMMNDW-----N----EVSWNAMISGYSMH-GLSAEVLKVFDLMQQRGWRPN----- 544 (805)
Q Consensus 480 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~----- 544 (805)
.+++.+..+|.+.|++++|...|++..+. + ..+|+.+...|... |++++|+..|++.++. .|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence 34555666666666666666666555421 1 34677788888885 8888888888887762 221
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCH---
Q 039715 545 --NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI-----EHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSV--- 613 (805)
Q Consensus 545 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~--- 613 (805)
..++..+...+...|++++|+.+|++..+...-.+.. ..|..++.++...|++++|...+++. .+.|+.
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2357777778888888888888888877532111111 15667777888888888888888865 333432
Q ss_pred ---HHHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 614 ---MIWRALLGACI--IHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 614 ---~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
..+..++.++. ..+++++|+..++++++++|.....+..+-.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 13444555554 3467888888888888888866554444433
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=9.1e-09 Score=109.42 Aligned_cols=230 Identities=6% Similarity=-0.043 Sum_probs=141.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCC-CCh----hhHHHHHHHHhccCCchhHHHHHHHHHHc----CCC--C-cH
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLEEQVP-ATE----VTYSSVLRACASLAALEPGMQVHCLTVKA----NYD--M-DV 479 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 479 (805)
++.+...|...|++++|...+++....... ++. .++..+...+...|++++|...+....+. +.. | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 344444555555555555555554431100 111 12334444555566666666655554432 211 2 23
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhcCC--C------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHH-
Q 039715 480 VVANALIDMYAKCGSITDARLVFDMMND--W------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN-LTFV- 549 (805)
Q Consensus 480 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~- 549 (805)
..+..+...|...|++++|...+++... + ...+|..+...+...|++++|...+++.....-.++. ..+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 4556677778888888888888876541 1 2346777888888889999999999888764222221 1111
Q ss_pred ----HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCCH
Q 039715 550 ----GVLSACSNGGLLEQGEAYFKSMVANYGIEPC-----IEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPSV 613 (805)
Q Consensus 550 ----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~~ 613 (805)
..+..+...|++++|..+++.... ..|. ...+..+..++...|++++|.+.+++. +..++.
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~ 292 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAK---PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCC---CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCC---CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhH
Confidence 223346688999999998887663 2221 234667788888999999999888765 111122
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 614 -MIWRALLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 614 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
..+..+..++...|+.++|...+++++++.+
T Consensus 293 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 293 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 2566677778889999999999999887654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=2.6e-09 Score=109.26 Aligned_cols=195 Identities=8% Similarity=-0.024 Sum_probs=144.3
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---------CHhHHHHHHHHHHhCCChHHH
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW---------NEVSWNAMISGYSMHGLSAEV 529 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A 529 (805)
++++|...+..+ ...|...|++++|.+.|++...- ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 467777766655 45688899999999998876531 146899999999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHH
Q 039715 530 LKVFDLMQQRGWR-PN----NLTFVGVLSACSNG-GLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDK 599 (805)
Q Consensus 530 ~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~e 599 (805)
+..|++.++.... .+ ..++..+..++... |++++|+..|++..+.+.-..+ ..++..++..|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999998763111 11 34788888899996 9999999999998854211111 3568889999999999999
Q ss_pred HHHHHHcC----CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch-----HHHHHHHHH--hcCCh
Q 039715 600 AAKLIEGI----PFQPSV-----MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT-----HVLLSNIYA--MARSW 663 (805)
Q Consensus 600 A~~~~~~~----~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 663 (805)
|++.+++. |-.++. ..|..++.++...|++++|+..++++++++|+.... +..|+..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999865 212221 257788888999999999999999999999976653 344566665 56789
Q ss_pred HHHhh
Q 039715 664 EKAAS 668 (805)
Q Consensus 664 ~~a~~ 668 (805)
++|.+
T Consensus 257 ~~A~~ 261 (292)
T 1qqe_A 257 SEHCK 261 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99887
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=4.7e-09 Score=105.42 Aligned_cols=191 Identities=13% Similarity=0.033 Sum_probs=137.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC---C---HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMNDW---N---EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW-RPN-NLTFV 549 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 549 (805)
+...+-.+...+.+.|++++|...|+++.+. + ...|..+..+|.+.|++++|+..|++.++... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4555666677777788888888888877632 3 55677777888888888888888888877421 112 23455
Q ss_pred HHHHHHHc--------CCCHHHHHHHHHHHHHhcCCCCChH-H--------------HHHHHHHHHhcCCHHHHHHHHHc
Q 039715 550 GVLSACSN--------GGLLEQGEAYFKSMVANYGIEPCIE-H--------------YTSMVSLLGRAGHLDKAAKLIEG 606 (805)
Q Consensus 550 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~-~--------------~~~li~~~~~~g~~~eA~~~~~~ 606 (805)
.+..++.. .|++++|+..|+++.+.+.-.+... . +..++..|.+.|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 56666666 7888888888888876532222211 1 15668889999999999999987
Q ss_pred C----CCCC-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCChHHHhh
Q 039715 607 I----PFQP-SVMIWRALLGACIIH----------NNVEIGRLSAQHILDFEPEDE---ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 607 ~----~~~p-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+ |..+ ....|..++.+|... |++++|+..++++++..|+++ .+...+..++...|+++++..
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 6 3222 235677888888766 899999999999999999986 456678888888888877654
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=1.5e-10 Score=105.30 Aligned_cols=139 Identities=6% Similarity=-0.049 Sum_probs=91.2
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC
Q 039715 519 GYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH 596 (805)
Q Consensus 519 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 596 (805)
.+...|+.++|++.+++... ..|+ ...+..+...|...|++++|+..|++..+ +.| +...|..++.+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 33444555555555555443 2232 22344455555666666666666666553 234 34566666666666666
Q ss_pred HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 597 LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLS-AQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 597 ~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
+++|+..|++. ...| +...|..++..|...|+.++|.+. ++++++++|+++.+|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666666644 2344 467888899999999998776655 699999999999999999999998885
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=2.4e-09 Score=108.54 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=75.1
Q ss_pred HHcCChHHHHHHHHHHhhc-----C-CCC-ChhhHHHHHHHHhccCCchhHHHHHHHHHHc------CC-CCcHhHHHHH
Q 039715 420 VQLGEVGKAMIMFSKMLEE-----Q-VPA-TEVTYSSVLRACASLAALEPGMQVHCLTVKA------NY-DMDVVVANAL 485 (805)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 485 (805)
...|++++|+.+|++..+. + -.| ...++..+...+...|++++|...+..+++. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666777777666541 0 011 1224445555555556666666555555443 11 1123445555
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCC-----------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHc------CCCCC-HHH
Q 039715 486 IDMYAKCGSITDARLVFDMMNDW-----------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQR------GWRPN-NLT 547 (805)
Q Consensus 486 i~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t 547 (805)
...|...|++++|.+.|++.... ...+|..+...|...|++++|+..|+++.+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 55555555555555555544311 1334555555555555555555555555442 10221 224
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMV 572 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~ 572 (805)
+..+...+...|++++|..+++.+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555554
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.00 E-value=2e-08 Score=100.70 Aligned_cols=191 Identities=8% Similarity=-0.009 Sum_probs=147.1
Q ss_pred CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-h
Q 039715 507 DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-I 581 (805)
Q Consensus 507 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 581 (805)
..+...+-.+...+.+.|++++|+..|+++++. .|+ ...+..+..++...|++++|...|+.+.+.+.-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 346778888899999999999999999999984 454 457788888999999999999999999976433333 4
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHcC-CCCCC-HHHH-----------------HHHHHHHHHcCCHHHHHH
Q 039715 582 EHYTSMVSLLGR--------AGHLDKAAKLIEGI-PFQPS-VMIW-----------------RALLGACIIHNNVEIGRL 634 (805)
Q Consensus 582 ~~~~~li~~~~~--------~g~~~eA~~~~~~~-~~~p~-~~~~-----------------~~l~~~~~~~g~~~~a~~ 634 (805)
..+..++..|.+ .|++++|+..|+++ ...|+ ...+ ..++..|...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 567788899998 99999999999876 12232 2233 556788999999999999
Q ss_pred HHHHHhccCCCC---cchHHHHHHHHHhc----------CChHHHhhcCCCCceEEECCeEEEEeeCCCCCccHHHHHHH
Q 039715 635 SAQHILDFEPED---EATHVLLSNIYAMA----------RSWEKAASKEPGLSWIENQGMVHYFRAGDTSHADMNIIRGM 701 (805)
Q Consensus 635 ~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~ 701 (805)
.++++++..|++ +.++..++.+|... |++++|..... ..+..++.+|...+....
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~------------~~~~~~p~~~~~~~a~~~ 237 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE------------RLLQIFPDSPLLRTAEEL 237 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH------------HHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH------------HHHHHCCCChHHHHHHHH
Confidence 999999999985 45889999999977 88899987000 001112345666777777
Q ss_pred HHHHHHHHHH
Q 039715 702 LEWLNMKSRK 711 (805)
Q Consensus 702 l~~l~~~~~~ 711 (805)
+..+...+.+
T Consensus 238 l~~~~~~~~~ 247 (261)
T 3qky_A 238 YTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=1.6e-08 Score=102.34 Aligned_cols=223 Identities=9% Similarity=0.024 Sum_probs=143.3
Q ss_pred hcCChHHHHHHHhc-------CCCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHhhc------CCCCC-hhhHHHHH
Q 039715 390 KCGRMENSVELFAE-------SPKR----NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEE------QVPAT-EVTYSSVL 451 (805)
Q Consensus 390 ~~g~~~~A~~~f~~-------~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll 451 (805)
..|++++|...|++ ...+ ...+|..+...|...|++++|+..|++..+. +-.|. ..++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555543 3222 3457888999999999999999999998764 22233 34778888
Q ss_pred HHHhccCCchhHHHHHHHHHHc------C-CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----------CHhHH
Q 039715 452 RACASLAALEPGMQVHCLTVKA------N-YDMDVVVANALIDMYAKCGSITDARLVFDMMNDW-----------NEVSW 513 (805)
Q Consensus 452 ~a~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~ 513 (805)
..+...|++++|...+..+.+. . .+....++..+...|...|++++|...|++..+. ...+|
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8999999999999999888765 1 1334677888999999999999999999877532 34578
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC-------CCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHH
Q 039715 514 NAMISGYSMHGLSAEVLKVFDLMQQRG-------WRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYT 585 (805)
Q Consensus 514 ~~li~~~~~~g~~~~A~~l~~~m~~~g-------~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 585 (805)
..+...|...|++++|+..|+++.+.. ..|... .+..+.......+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 227 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK------------------------- 227 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC-------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc-------------------------
Confidence 888999999999999999999987631 111111 11111111111110
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGIP-FQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDF 642 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 642 (805)
+.....+.++...++... ..|+ ..+|..++..|...|++++|+..+++++++
T Consensus 228 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 228 -----RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -----CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -----hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 011223344444555443 2232 346777888888888888888888888765
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=6.1e-09 Score=119.81 Aligned_cols=167 Identities=10% Similarity=-0.065 Sum_probs=94.9
Q ss_pred HhcCCHHHHHHHhhhcC-----------CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc
Q 039715 490 AKCGSITDARLVFDMMN-----------DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSN 557 (805)
Q Consensus 490 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 557 (805)
...|++++|++.|++.. ..+...|..+...|.+.|++++|++.|+++.+. .|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 44555555555555544 224445555666666666666666666666652 343 3355555555666
Q ss_pred CCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRL 634 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 634 (805)
.|++++|...|+++.+ +.| +...|..+..+|.+.|++++ ++.|+++ ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666553 234 34555666666666666666 6555544 2223 34566666666666666666666
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 635 SAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 635 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
.++++++++|++..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 6666666666666666666666655443
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=2.1e-08 Score=96.64 Aligned_cols=163 Identities=10% Similarity=0.035 Sum_probs=119.4
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCC---CHhHHHH----------------HHHHHHhCCChHHHHHHHHHHHHcCCCCC-H
Q 039715 486 IDMYAKCGSITDARLVFDMMNDW---NEVSWNA----------------MISGYSMHGLSAEVLKVFDLMQQRGWRPN-N 545 (805)
Q Consensus 486 i~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 545 (805)
...+...|++++|...|++..+. +...|.. +...|...|++++|+..|++.++ +.|+ .
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 33455566666666666665432 2334444 88999999999999999999999 4564 5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC--HHHHHHHHHcCCCCCCH--HHHHHHH
Q 039715 546 LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH--LDKAAKLIEGIPFQPSV--MIWRALL 620 (805)
Q Consensus 546 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~--~~eA~~~~~~~~~~p~~--~~~~~l~ 620 (805)
..+..+..++...|++++|...|+++.+ +.| +...+..++..|...|. .+++...+++.. .|+. ..|..++
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 6788888999999999999999999985 456 57788899988876654 455667777664 4444 3456667
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
.++...|++++|+..+++++++.|+. .....|..
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDK 198 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 77888999999999999999999964 33333443
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.89 E-value=1.7e-07 Score=93.89 Aligned_cols=240 Identities=8% Similarity=-0.003 Sum_probs=155.8
Q ss_pred HhcCChHHHHHHHhcCCCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHH
Q 039715 389 AKCGRMENSVELFAESPKRNH-VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVH 467 (805)
Q Consensus 389 ~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 467 (805)
.-.|.+..++.-...+...+. ..-.-+.++|...|+++.. ..-.|....+..+. .|...+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHHH
Confidence 345777777665555443222 2223345677777766531 11223322332222 222222 55666
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 039715 468 CLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND-----WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR 542 (805)
Q Consensus 468 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 542 (805)
+.....+ .++......+..+|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 6666554 34445556788888889999999999988743 2456777788889999999999999999988 56
Q ss_pred C-----CHHHHHHHHHHH--Hc--CCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCC-C---
Q 039715 543 P-----NNLTFVGVLSAC--SN--GGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIP-F--- 609 (805)
Q Consensus 543 p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~--- 609 (805)
| +..+...+..++ .. .++..+|..+|+++.++ .|+......+..++.+.|++++|.+.++.+. .
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 356666666552 22 34899999999998754 3553333334447889999999999987542 1
Q ss_pred -------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH
Q 039715 610 -------QP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATH 650 (805)
Q Consensus 610 -------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 650 (805)
.| |+.+.-.++......|+ +|.+.++++.+..|+++-..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 14 45566677767677787 88999999999999886543
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=1.6e-08 Score=102.92 Aligned_cols=165 Identities=11% Similarity=-0.070 Sum_probs=126.2
Q ss_pred HHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Q 039715 499 RLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGI 577 (805)
Q Consensus 499 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 577 (805)
.+.+......+...+..+...+.+.|++++|+..|++..+ ..|+ ...+..+..++...|++++|...++.+.. .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~ 180 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---Q 180 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---h
Confidence 3344444444556677777888888889999999988888 4564 45777788888888999999998888763 3
Q ss_pred CCChHHHHHH-HHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--cchHHH
Q 039715 578 EPCIEHYTSM-VSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPED--EATHVL 652 (805)
Q Consensus 578 ~p~~~~~~~l-i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~ 652 (805)
.|+....... ...+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..++..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 5655433332 23366777788888877755 2234 57789999999999999999999999999999988 889999
Q ss_pred HHHHHHhcCChHHHhh
Q 039715 653 LSNIYAMARSWEKAAS 668 (805)
Q Consensus 653 l~~~~~~~g~~~~a~~ 668 (805)
|+.+|...|+.++|..
T Consensus 261 l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 261 FQEILAALGTGDALAS 276 (287)
T ss_dssp HHHHHHHHCTTCHHHH
T ss_pred HHHHHHHcCCCCcHHH
Confidence 9999999999999865
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=1.1e-07 Score=95.33 Aligned_cols=228 Identities=7% Similarity=-0.061 Sum_probs=157.6
Q ss_pred HHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 039715 419 YVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDA 498 (805)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 498 (805)
..-.|++..++.-..++.. ..+......+.+++..+|+.+... .-.|.......+. .|...+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT----C
T ss_pred HHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc----H
Confidence 3447888888874433321 222234445567777777766421 1223333333333 333433 6
Q ss_pred HHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 039715 499 RLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVAN 574 (805)
Q Consensus 499 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 574 (805)
...|++... ++..++..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~- 164 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN- 164 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 777777653 4566677888999999999999999999877553233 44677888889999999999999999984
Q ss_pred cCCCC-----ChHHHHHHHHH--HHhcC--CHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--
Q 039715 575 YGIEP-----CIEHYTSMVSL--LGRAG--HLDKAAKLIEGIP-FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDF-- 642 (805)
Q Consensus 575 ~~~~p-----~~~~~~~li~~--~~~~g--~~~eA~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 642 (805)
..| +..+...|..+ ....| ++++|..+|+++. ..|+...-..+++++...|++++|+..++.+++.
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 456 24444555544 33334 9999999999883 3455333344455888999999999999988887
Q ss_pred --------CCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 643 --------EPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 643 --------~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|+++.++..++.+....|+ +|.+
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~ 274 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTED 274 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHH
Confidence 58899999899888888897 5554
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=5.8e-08 Score=85.47 Aligned_cols=131 Identities=14% Similarity=0.212 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLL 591 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 591 (805)
.|..++..+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.... ..+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677777777888888888888877743 2245566677777777888888888888877541 23456677778888
Q ss_pred HhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 592 GRAGHLDKAAKLIEGI-PF-QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
.+.|++++|.+.++++ .. ..+...|..++..+...|++++|...++++++..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888887765 11 235677888888888888999999888888888875
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=4.5e-08 Score=100.81 Aligned_cols=219 Identities=9% Similarity=-0.018 Sum_probs=150.7
Q ss_pred cCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 039715 422 LGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLV 501 (805)
Q Consensus 422 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 501 (805)
.|++++|.+++++..+... .. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4567778887777654311 10 0 11135566666555443 4567778888888888
Q ss_pred hhhcCCC-----C----HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHcCCCHHHHHHH
Q 039715 502 FDMMNDW-----N----EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW---RPN--NLTFVGVLSACSNGGLLEQGEAY 567 (805)
Q Consensus 502 ~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~ 567 (805)
|.+..+- + ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+..+|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8766521 1 44788889999999999999999998776311 122 2467778888888 999999999
Q ss_pred HHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 039715 568 FKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS----VMIWRALLGACIIHNNVEIGRLS 635 (805)
Q Consensus 568 ~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 635 (805)
|++..+.+.-..+ ...+..+..+|.+.|++++|++.+++. +..++ ...|..++..+...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988754311111 467888999999999999999999865 11122 23677777778888999999999
Q ss_pred HHHHhccCCCCcch-----HHHHHHHHHhcCChHHHhh
Q 039715 636 AQHILDFEPEDEAT-----HVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 636 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 668 (805)
+++++ +.|+.... ...++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976543 33455555 5666655543
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.86 E-value=3.3e-08 Score=113.72 Aligned_cols=203 Identities=10% Similarity=0.074 Sum_probs=154.8
Q ss_pred hccCCchhHHHHHHHHH--------HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhC
Q 039715 455 ASLAALEPGMQVHCLTV--------KANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMH 523 (805)
Q Consensus 455 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 523 (805)
...|++++|.+.++.++ +.. +.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677777777777766 322 44567788888999999999999999998873 4778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 039715 524 GLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAA 601 (805)
Q Consensus 524 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~ 601 (805)
|++++|++.|++.++ +.|+ ...+..+..++...|++++ +..|+++.+. .| +...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998 4564 5678888889999999999 9999998853 56 5678999999999999999999
Q ss_pred HHHHcC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 039715 602 KLIEGI-PFQPS-VMIWRALLGACIIHNN-----VEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWE 664 (805)
Q Consensus 602 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 664 (805)
+.++++ ...|+ ...|..+..++...|+ .+...++.+.+.++.++++..+..-..++..+-.|-
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~ll~~~l~~~ 624 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALVLGGALDWL 624 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999987 46676 4578888888766555 344555556666666766666655555555444443
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.82 E-value=9.6e-08 Score=93.29 Aligned_cols=170 Identities=11% Similarity=-0.021 Sum_probs=107.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC----HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH----HH
Q 039715 479 VVVANALIDMYAKCGSITDARLVFDMMND--WN----EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL----TF 548 (805)
Q Consensus 479 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 548 (805)
...+..+...+.+.|++++|...|+++.+ |+ ...+..++.+|.+.|++++|+..|+++.+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455666778888888888888887763 21 346777788888888888888888888874 44422 33
Q ss_pred HHHHHHHHc------------------CCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 039715 549 VGVLSACSN------------------GGLLEQGEAYFKSMVANYGIEPCI-EHYTSMVSLLGRAGHLDKAAKLIEGIPF 609 (805)
Q Consensus 549 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~ 609 (805)
..+..++.. .|+.++|...|+.+.+. .|+. ..+.++..+. .+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH--------
Confidence 334444432 45666666666666633 2322 1111111000 000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCChHHHhh
Q 039715 610 QPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE---ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 610 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 668 (805)
......++..+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 00113455667888999999999999999988875 568888999999999998876
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=3.2e-08 Score=86.48 Aligned_cols=114 Identities=10% Similarity=0.069 Sum_probs=86.2
Q ss_pred CCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHH
Q 039715 541 WRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIW 616 (805)
Q Consensus 541 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~ 616 (805)
+.|+.. .+......+.+.|++++|+..|++.++. .| +...|..++.+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 445432 4556666777777777777777776643 34 4667777777777777777777777754 2234 56789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 617 RALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 617 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
..++.++...|++++|+..++++++++|+++.++..|++++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999998888753
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.77 E-value=4.6e-09 Score=95.27 Aligned_cols=114 Identities=13% Similarity=-0.012 Sum_probs=96.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC
Q 039715 552 LSACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 552 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 628 (805)
...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|++.|++. ...| +...|..++..|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344566788999999888765 34553 455667899999999999999999976 3445 57899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 629 VEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 629 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+++|+..++++++++|+++.++..++.+|...|++++|.+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999999999999999999999988765
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.75 E-value=1.2e-07 Score=107.15 Aligned_cols=158 Identities=11% Similarity=-0.009 Sum_probs=119.9
Q ss_pred cCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHH
Q 039715 492 CGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAY 567 (805)
Q Consensus 492 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 567 (805)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3678888888887763 2577888899999999999999999999988 4564 55788888889999999999999
Q ss_pred HHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHhc
Q 039715 568 FKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIH---NNVEIGRLSAQHILD 641 (805)
Q Consensus 568 ~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 641 (805)
+++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998854 45 5678889999999999999999999876 2234 567889999999999 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 039715 642 FEPEDEATHVLLS 654 (805)
Q Consensus 642 ~~p~~~~~~~~l~ 654 (805)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888887665
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=1.6e-07 Score=91.76 Aligned_cols=185 Identities=10% Similarity=-0.098 Sum_probs=134.0
Q ss_pred hhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CH---hHHHH
Q 039715 444 EVTYSSVLRACASLAALEPGMQVHCLTVKANYDM--DVVVANALIDMYAKCGSITDARLVFDMMND--W-NE---VSWNA 515 (805)
Q Consensus 444 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~ 515 (805)
...+..+...+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++..+ | +. ..|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445566778899999999999999999865322 246788899999999999999999999863 2 22 25556
Q ss_pred HHHHHHh------------------CCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Q 039715 516 MISGYSM------------------HGLSAEVLKVFDLMQQRGWRPNNLT-FVGVLSACSNGGLLEQGEAYFKSMVANYG 576 (805)
Q Consensus 516 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 576 (805)
+..++.. .|++++|+..|+++++ ..|+... ..... . ...+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~----~------l~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATK----R------LVFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHH----H------HHHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHH----H------HHHHHHHH-----
Confidence 6666654 5789999999999998 4576432 11110 0 00011111
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 577 IEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 577 ~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
......++..|.+.|++++|+..|+++ ...|+ ...+..++.++...|+.++|+..++++....|++..+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 112235678899999999999999876 22333 2468889999999999999999999999999987654
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.73 E-value=7.8e-06 Score=89.56 Aligned_cols=125 Identities=9% Similarity=0.045 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhc-cCCchhHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 039715 410 VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACAS-LAALEPGMQVHCLTVKANYDMDVVVANALIDM 488 (805)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 488 (805)
..|...+....+.+..+.|..+|.+. .. ...+...|......-.. .++.+.|..+++..++.. +.++..+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45777777777778899999999988 32 11222233221111112 236889999999888764 3345556677888
Q ss_pred HHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 489 YAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
..+.|+.+.|+.+|+++. +....|...+.--..+|+.+.+.++++++..
T Consensus 364 e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888999999999999984 3567788877777777888888887777764
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=4.6e-08 Score=88.24 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=77.9
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 576 GIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 576 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
.+.| +...+..+...|.+.|++++|++.|+++ ...| +...|..++.+|...|++++|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4455 3466777888888888888888888866 2344 57789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHhh
Q 039715 653 LSNIYAMARSWEKAAS 668 (805)
Q Consensus 653 l~~~~~~~g~~~~a~~ 668 (805)
+|.+|...|++++|.+
T Consensus 110 lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKE 125 (151)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 9999999999999977
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.72 E-value=4.2e-07 Score=87.70 Aligned_cols=142 Identities=8% Similarity=-0.070 Sum_probs=64.8
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhcCCCCChHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGG----LLEQGEAYFKSMVANYGIEPCIEHY 584 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~~ 584 (805)
++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|..+|++..+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 33344444444444444444444444444432 23333333333333 3 445555555444321 133344
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHcCC-CCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 585 TSMVSLLGR----AGHLDKAAKLIEGIP-FQPS---VMIWRALLGACII----HNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 585 ~~li~~~~~----~g~~~eA~~~~~~~~-~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
..|..+|.. .+++++|.+++++.- ..|. +..+..|...|.. .++.++|+..++++.++ |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 444444444 445555555555432 1221 4445555555554 44555555555555555 444455555
Q ss_pred HHHHHHh
Q 039715 653 LSNIYAM 659 (805)
Q Consensus 653 l~~~~~~ 659 (805)
|+.+|..
T Consensus 168 Lg~~y~~ 174 (212)
T 3rjv_A 168 AGMMFQQ 174 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555544
No 108
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.72 E-value=3.1e-07 Score=80.63 Aligned_cols=128 Identities=13% Similarity=0.246 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 039715 411 TWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYA 490 (805)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 490 (805)
.|..+...|...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...+..+.+.+ +.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~------------- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PR------------- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT-------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CC-------------
Confidence 45666667777777777777777766542 1122333333444444444444444444443332 12
Q ss_pred hcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 039715 491 KCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKS 570 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 570 (805)
+...|..++..+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...++.
T Consensus 68 ------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 68 ------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp ------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 33344444555555555555555555555431 12333444455555555555555555555
Q ss_pred HH
Q 039715 571 MV 572 (805)
Q Consensus 571 m~ 572 (805)
+.
T Consensus 129 ~~ 130 (136)
T 2fo7_A 129 AL 130 (136)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.71 E-value=7.6e-08 Score=89.89 Aligned_cols=150 Identities=10% Similarity=-0.035 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSA--CS 556 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~ 556 (805)
...+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+.. +..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHHH
Confidence 34455666777777777777777663 25566777777777777777777777776653 34322 2221111 11
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 039715 557 NGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSA 636 (805)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 636 (805)
..+...++...+++..+. .| .+...|..+...+...|++++|+..+
T Consensus 86 ~~~~~~~a~~~~~~al~~---~P-------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA---NP-------------------------------DNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH---ST-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHh---CC-------------------------------CCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 111111233333333321 22 23455556666666666666666666
Q ss_pred HHHhccCCCC--cchHHHHHHHHHhcCChHHHhh
Q 039715 637 QHILDFEPED--EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 637 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+++++.+|+. +..+..++.+|...|+.++|..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 6666666543 3356666666666666666543
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.69 E-value=1.2e-07 Score=107.11 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=109.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHH
Q 039715 523 HGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA 600 (805)
.|++++|++.|++..+ ..|+ ...+..+...+...|++++|...|++.. .+.| +...+..++.+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4789999999999988 4565 5678888889999999999999999988 4566 478899999999999999999
Q ss_pred HHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc---CChHHHhh
Q 039715 601 AKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA---RSWEKAAS 668 (805)
Q Consensus 601 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~ 668 (805)
.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|... |++++|.+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 9999876 2334 5778999999999999999999999999999999999999999999999 99988887
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.69 E-value=6.9e-07 Score=86.15 Aligned_cols=173 Identities=7% Similarity=-0.108 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC-CHhHHHHHHHHHHhCC----ChHHHHHHHHHH
Q 039715 462 PGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW-NEVSWNAMISGYSMHG----LSAEVLKVFDLM 536 (805)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~A~~l~~~m 536 (805)
+|.+.+....+.| ++..+..|..+|...+++++|.+.|++..+. +..++..|...|.. + ++++|+..|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4556666666654 6677888888888889999999999887644 77788888888887 6 899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhcCCCCC---hHHHHHHHHHHHh----cCCHHHHHHHHH
Q 039715 537 QQRGWRPNNLTFVGVLSACSN----GGLLEQGEAYFKSMVANYGIEPC---IEHYTSMVSLLGR----AGHLDKAAKLIE 605 (805)
Q Consensus 537 ~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~eA~~~~~ 605 (805)
.+.| +...+..+...+.. .+++++|..+|++..+ ..|. +..+..|..+|.. .+++++|..+|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8754 55677777777776 7899999999988773 3453 6788889999988 889999999998
Q ss_pred cCC-CCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhccCC
Q 039715 606 GIP-FQPSVMIWRALLGACIIH-N-----NVEIGRLSAQHILDFEP 644 (805)
Q Consensus 606 ~~~-~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~p 644 (805)
+.- ..++...+..|...|... | +.++|+..++++.+..+
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 762 224566777888777653 3 89999999999998764
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=1.5e-07 Score=87.75 Aligned_cols=118 Identities=12% Similarity=0.007 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcCC-CCCCHHHHHHHHHH-HH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGIP-FQPSVMIWRALLGA-CI 624 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~~-~~p~~~~~~~l~~~-~~ 624 (805)
+......+...|++++|...|+...+. .| +...+..+..+|.+.|++++|+..++++. ..|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 445556677889999999998887643 45 56788888999999999999999998873 34544433332222 22
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..++..+|+..++++++++|+++..+..++.+|...|++++|.+
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 129 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE 129 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 22333457999999999999999999999999999999999988
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.67 E-value=2.9e-08 Score=86.76 Aligned_cols=93 Identities=10% Similarity=0.080 Sum_probs=84.1
Q ss_pred CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 576 GIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 576 ~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
-+.|+ ...+...+..|.+.|++++|++.|++. ...| +...|..++.++...|++++|+..++++++++|+++.+|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 36675 467888999999999999999999876 3344 67899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHhh
Q 039715 653 LSNIYAMARSWEKAAS 668 (805)
Q Consensus 653 l~~~~~~~g~~~~a~~ 668 (805)
+|.+|...|++++|.+
T Consensus 87 lg~~~~~~~~~~~A~~ 102 (126)
T 4gco_A 87 KAACLVAMREWSKAQR 102 (126)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHH
Confidence 9999999999999988
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.66 E-value=1.2e-07 Score=97.64 Aligned_cols=191 Identities=8% Similarity=-0.039 Sum_probs=145.2
Q ss_pred ccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHH
Q 039715 456 SLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDL 535 (805)
Q Consensus 456 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 535 (805)
..|++++|.+++.+..+.... . .+...+++++|...|.+ .+..|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356778888888877764211 1 11115888999888765 36678899999999999999
Q ss_pred HHHcCC---CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC--C--ChHHHHHHHHHHHhcCCHHHHHHHHHc
Q 039715 536 MQQRGW---RPN--NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIE--P--CIEHYTSMVSLLGRAGHLDKAAKLIEG 606 (805)
Q Consensus 536 m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~~~~li~~~~~~g~~~eA~~~~~~ 606 (805)
..+... .+. ..+|..+...|...|++++|+..|++..+.+.-. | ...++..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876321 111 3378888889999999999999999887543211 1 14678889999998 999999999986
Q ss_pred C----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCChHHHhh
Q 039715 607 I----PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE------ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 607 ~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~ 668 (805)
. +...+ ..++..+...+...|++++|+..+++++++.|++. ..+..++.+|...|++++|.+
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5 11111 35788999999999999999999999999877554 367778889999999999988
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=9.6e-06 Score=88.84 Aligned_cols=346 Identities=11% Similarity=0.016 Sum_probs=194.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCC-hHHHHHHHhhCCC------CCcccHHHHHHHHH----hCCCh
Q 039715 256 DTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGE-ISNARRIFEEMPK------KDVIPWSFMIARYA----QTDLS 324 (805)
Q Consensus 256 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~~~~------~~~~~~~~li~~~~----~~g~~ 324 (805)
++.+.+.++|+..++. .|+...|...+....+.++ .+....+|+.... .+...|...+.-+. .+++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7888888888888875 4577788887776666553 3445555554321 23445666665543 23566
Q ss_pred hHHHHHHHHHHHCCCCCChhHHHHHHHHH---hccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 039715 325 IDAVELFCRMRQAFVAPNQFTFVSVLQAC---ATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELF 401 (805)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 401 (805)
+.+..+|++.+.. ++.. +..+-..| ....+...+..+..... +.+..|+.++
T Consensus 106 ~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~fE~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y 160 (493)
T 2uy1_A 106 EKIRNGYMRALQT--PMGS--LSELWKDFENFELELNKITGKKIVGDTL---------------------PIFQSSFQRY 160 (493)
T ss_dssp HHHHHHHHHHHTS--CCTT--HHHHHHHHHHHHHHHCHHHHHHHHHHHH---------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--hhhh--HHHHHHHHHHHHHHhccccHHHHHHHHh---------------------HHHHHHHHHH
Confidence 7777888887763 1111 11222221 11111112222211110 1112222222
Q ss_pred hcCC----CCChhhHHHHHHHHHHcCC-------hHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHH
Q 039715 402 AESP----KRNHVTWNTMIVGYVQLGE-------VGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLT 470 (805)
Q Consensus 402 ~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 470 (805)
+.+. ..+...|...+.--..++. .+.+..+|++++... +-+...|...+.-+.+.|+++.|..+++..
T Consensus 161 ~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erA 239 (493)
T 2uy1_A 161 QQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239 (493)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111 1133355554443222110 234556677766542 233445555555566677777777777777
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCCHHHH-HHHhhhcC------------CCCHhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 039715 471 VKANYDMDVVVANALIDMYAKCGSITDA-RLVFDMMN------------DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQ 537 (805)
Q Consensus 471 ~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 537 (805)
++. +.+...+.. |+...+.++. ..+.+... ......|-..+..+.+++..+.|..+|++.
T Consensus 240 i~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A- 312 (493)
T 2uy1_A 240 IEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL- 312 (493)
T ss_dssp HHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-
T ss_pred HhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 776 333333322 2221111111 11111110 112346777777777788899999999999
Q ss_pred HcCCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHH
Q 039715 538 QRGWRPNNLTFVGVLSAC-SNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIW 616 (805)
Q Consensus 538 ~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~ 616 (805)
.. ..++...|......- ...++.+.|+.+|+...+.++- ++..+...++...+.|+.+.|..+|+++. .....|
T Consensus 313 ~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw 387 (493)
T 2uy1_A 313 GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMW 387 (493)
T ss_dssp TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHH
T ss_pred hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHH
Confidence 32 122333443322221 1234699999999999977532 34566778888899999999999999985 467889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Q 039715 617 RALLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 617 ~~l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
...+.--..+|+.+.+..+++++.+
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999988899999999998888875
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.64 E-value=6.5e-06 Score=83.32 Aligned_cols=224 Identities=10% Similarity=0.019 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccC--CchhHHHHHHHHHHcCCCCcHhHHHHHHHHH----Hhc---CC
Q 039715 425 VGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLA--ALEPGMQVHCLTVKANYDMDVVVANALIDMY----AKC---GS 494 (805)
Q Consensus 425 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~---g~ 494 (805)
.++|+.++.+++.. .|+.. .++.--..+...+ .++++...+..++..+ +.+..+|+.-...+ .+. ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 34566666666553 34433 2344444444555 6666666666666654 23344444443333 444 77
Q ss_pred HHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC------HHH
Q 039715 495 ITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSA--EVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGL------LEQ 563 (805)
Q Consensus 495 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~~ 563 (805)
+++++++++++. .+|-.+|+--.-.+.+.|+++ ++++.++++++... -|...+..-.....+.|. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 888999888886 357788888888888889888 99999999998542 255566666666677776 889
Q ss_pred HHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHH-HHHHHHcCC-C----CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 039715 564 GEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDK-AAKLIEGIP-F----QPSVMIWRALLGACIIHNNVEIGRLSA 636 (805)
Q Consensus 564 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~e-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~g~~~~a~~~~ 636 (805)
++++++.++.. .| |...|+.+..++.+.|+..+ +.++.++.- . ..++..+..++..|.+.|+.++|++++
T Consensus 205 El~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999988854 45 67788888889999888554 556777652 1 246788999999999999999999999
Q ss_pred HHHhc-cCCCCcchHHHHHH
Q 039715 637 QHILD-FEPEDEATHVLLSN 655 (805)
Q Consensus 637 ~~~~~-~~p~~~~~~~~l~~ 655 (805)
+.+.+ ++|-....+...+.
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHh
Confidence 99996 89988887776554
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=1.3e-06 Score=84.23 Aligned_cols=146 Identities=9% Similarity=-0.077 Sum_probs=102.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCC
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGL 560 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 560 (805)
+..+...|...|++++|.+.|++...++...|..+...|...|++++|+..|++..+. .| +...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 4456667778888888888888887777788888888888888888888888888774 34 44567777777778888
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039715 561 LEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPS-VMIWRALLGACIIHNNVEIGRLSAQHI 639 (805)
Q Consensus 561 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 639 (805)
+++|...|+.+.+. .|+.... .+...| +...|+ ...|..++.++...|++++|+..++++
T Consensus 87 ~~~A~~~~~~al~~---~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ---LRGNQLI-----DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHT---TTTCSEE-----ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCccHH-----HHHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888777643 2211000 000000 012333 357888888889999999999999999
Q ss_pred hccCCCCcc
Q 039715 640 LDFEPEDEA 648 (805)
Q Consensus 640 ~~~~p~~~~ 648 (805)
+++.|++..
T Consensus 148 l~~~p~~~~ 156 (213)
T 1hh8_A 148 TSMKSEPRH 156 (213)
T ss_dssp HTTCCSGGG
T ss_pred HHcCccccc
Confidence 999987644
No 118
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.62 E-value=6.5e-07 Score=86.06 Aligned_cols=186 Identities=12% Similarity=0.039 Sum_probs=120.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 039715 412 WNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK 491 (805)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 491 (805)
+-.....+.+.|++++|+..|++..+. .|+........ . ... .........+.+...|.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~---~~~--------------~~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-N---VDK--------------NSEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-H---SCT--------------TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-h---hcc--------------hhhhhHHHHHHHHHHHHH
Confidence 344455677888888888888888764 34332111110 0 000 001122344557888899
Q ss_pred cCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCC--HHHHH
Q 039715 492 CGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGL--LEQGE 565 (805)
Q Consensus 492 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~ 565 (805)
.|++++|...|++..+ .+...|..+...|...|++++|+..|++.++ +.|+ ..++..+..++...|. .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999988763 3678889999999999999999999999988 4665 4567777777655543 33445
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHH
Q 039715 566 AYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGA 622 (805)
Q Consensus 566 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~ 622 (805)
..++... ...|....+..+...+...|++++|+..|++. ...|+......+...
T Consensus 145 ~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 145 TDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred HHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5554433 22232334445566777789999999999865 567887666655443
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.61 E-value=1.3e-06 Score=84.21 Aligned_cols=115 Identities=9% Similarity=0.016 Sum_probs=88.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHc
Q 039715 549 VGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIH 626 (805)
Q Consensus 549 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~ 626 (805)
..+...+...|++++|...|++. +.|+...+..++..|.+.|++++|++.+++. ... .+...|..++..+...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 33444555666666666666543 3456666677777777777777777776654 122 3567889999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCc----------------chHHHHHHHHHhcCChHHHhh
Q 039715 627 NNVEIGRLSAQHILDFEPEDE----------------ATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 627 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|++++|+..+++++++.|++. ..+..++.+|...|++++|.+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 142 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999998877 899999999999999999988
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=6.5e-07 Score=91.39 Aligned_cols=156 Identities=9% Similarity=-0.069 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC--CCC--h
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN-----LTFVGVLSACSNGGLLEQGEAYFKSMVANYGI--EPC--I 581 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~ 581 (805)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788899999999999888874322111 12334555677888999999999888743211 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCC----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------C
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGIP----FQPS-----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPE------D 646 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~ 646 (805)
..|+.++..|...|++++|.+.++++- ..|+ ..++..++..|...|++++|+..+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578889999999999999999887651 1222 258899999999999999999999999987542 1
Q ss_pred cchHHHHHHHHHhcCChHHH
Q 039715 647 EATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 647 ~~~~~~l~~~~~~~g~~~~a 666 (805)
..+|..+|.+|...|++++|
T Consensus 236 ~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHH
Confidence 56788999999999999999
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.60 E-value=8.1e-08 Score=86.65 Aligned_cols=93 Identities=10% Similarity=0.035 Sum_probs=75.8
Q ss_pred CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 576 GIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 576 ~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
.+.| +...+..++..+.+.|++++|...|++. ...| +...|..++.+|...|++++|+..++++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4455 3456677788888888888888888765 2234 67788888888999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHhh
Q 039715 653 LSNIYAMARSWEKAAS 668 (805)
Q Consensus 653 l~~~~~~~g~~~~a~~ 668 (805)
+|.+|...|++++|.+
T Consensus 95 lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 95 AAECLLQXGELAEAES 110 (148)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 9999999999999877
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.60 E-value=3.1e-06 Score=86.30 Aligned_cols=153 Identities=9% Similarity=-0.080 Sum_probs=112.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHH
Q 039715 516 MISGYSMHGLSAEVLKVFDLMQQRGW-RPNNL----TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTS 586 (805)
Q Consensus 516 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 586 (805)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...|+.+.....-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888889999988888877321 12211 2334555667778899999999888853222223 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHcCC-------C-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHH
Q 039715 587 MVSLLGRAGHLDKAAKLIEGIP-------F-QPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPED------EATHV 651 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~~-------~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 651 (805)
++..|.+.|++++|.+.++++- . .+. ..++..++..|...|++++|+..+++++++.++. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999988887651 1 122 2478999999999999999999999999876533 56889
Q ss_pred HHHHHHHhcCC-hHHHhh
Q 039715 652 LLSNIYAMARS-WEKAAS 668 (805)
Q Consensus 652 ~l~~~~~~~g~-~~~a~~ 668 (805)
.+|.+|...|+ +++|.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHH
Confidence 99999999995 699866
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.59 E-value=1.5e-06 Score=88.35 Aligned_cols=154 Identities=10% Similarity=-0.067 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHc
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVG-VLSACSN 557 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~ 557 (805)
...+...+...|++++|...|++.. ..+...+..+...|.+.|++++|+..++++.. ..|+...... ....+..
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHHHHHHh
Confidence 3334444444444444444444433 11333444444444444444444444444443 2233221111 1112333
Q ss_pred CCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC---HHHHHHHHHHHHHcCCHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS---VMIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a 632 (805)
.+..++|...+++.... .| +...+..+..+|...|++++|++.++++ ...|+ ...+..|+..+...|+.++|
T Consensus 198 ~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred hcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 34444444444444422 23 3344445555555555555555554433 11221 34555555555555655555
Q ss_pred HHHHHHHh
Q 039715 633 RLSAQHIL 640 (805)
Q Consensus 633 ~~~~~~~~ 640 (805)
...+++.+
T Consensus 275 ~~~~r~al 282 (287)
T 3qou_A 275 ASXYRRQL 282 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=7.6e-08 Score=97.57 Aligned_cols=183 Identities=8% Similarity=-0.081 Sum_probs=116.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLS 553 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 553 (805)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..+++.++ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34556667777888888888888887765 23677788888888888888888888888877 4554 446777777
Q ss_pred HHHcCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 039715 554 ACSNGGLLEQGEAYFKSMVANYGIEPCI-EHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIG 632 (805)
Q Consensus 554 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 632 (805)
++...|++++|...|+...+. .|+. ..+...+....+.+...+... .......++..+...+.. + ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 888888888888888877643 2321 111112222222211111111 222222344444444433 2 26888889
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhc-CChHHHhh
Q 039715 633 RLSAQHILDFEPEDEATHVLLSNIYAMA-RSWEKAAS 668 (805)
Q Consensus 633 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~ 668 (805)
++.++++++++|++......+..++... +++++|.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~ 191 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9889999999988877777777777666 55666654
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=1e-06 Score=76.07 Aligned_cols=113 Identities=13% Similarity=0.173 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CC-CCCHHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PF-QPSVMIWRALLGACI 624 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~-~p~~~~~~~l~~~~~ 624 (805)
.+..+...+...|++++|..+++++.+.. ..+...+..++..+.+.|++++|..+++++ .. ..+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44555555556666666666666655331 123455666666666777777777666654 11 245678888999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
..|++++|...+++++++.|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999987765
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.56 E-value=6.1e-07 Score=78.73 Aligned_cols=113 Identities=11% Similarity=0.022 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~ 623 (805)
.+..+...+...|++++|...|+...+ ..| +...+..++..|...|++++|.+.++++ ... .+...|..+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 445555555555556666555555552 233 3455556666666666666666666544 112 3567888889999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARS 662 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 662 (805)
...|++++|+..+++++++.|++...+..++.+|...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988774
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=7.3e-06 Score=83.45 Aligned_cols=159 Identities=6% Similarity=-0.126 Sum_probs=122.3
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCCC-----C----HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 039715 484 ALIDMYAKCGSITDARLVFDMMNDW-----N----EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR-PN----NLTFV 549 (805)
Q Consensus 484 ~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~ 549 (805)
..+..+...|++++|.+.+++..+. + ...+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999887542 1 113345777777888999999999999984322 23 22688
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcC----CCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC-HHHH
Q 039715 550 GVLSACSNGGLLEQGEAYFKSMVANYG----IEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPS-VMIW 616 (805)
Q Consensus 550 ~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~~~~ 616 (805)
.+..+|...|++++|..+|+++.+... ..+ ...+|..++..|.+.|++++|.+.+++. ...+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999999885321 112 2347889999999999999999998755 11222 5689
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHhcc
Q 039715 617 RALLGACIIHN-NVEIGRLSAQHILDF 642 (805)
Q Consensus 617 ~~l~~~~~~~g-~~~~a~~~~~~~~~~ 642 (805)
..++.++...| ++++|+..+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999 579999999999874
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.55 E-value=3.5e-07 Score=90.36 Aligned_cols=137 Identities=10% Similarity=-0.037 Sum_probs=91.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHH
Q 039715 514 NAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC--IEHYTSMVSLL 591 (805)
Q Consensus 514 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 591 (805)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 33455566666677776666666552 354444444444566777777777777644311 0 111 23566677778
Q ss_pred HhcCCHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 039715 592 GRAGHLDKAAKLIEGI---PFQPS--VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSN 655 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 655 (805)
.+.|++++|++.|++. +..|. ...+..+..+++..|+.++|...++++++.+|+ +.+...|.+
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 8888888888888766 22243 346778888899999999999999999999998 777666643
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=2.7e-07 Score=83.13 Aligned_cols=98 Identities=8% Similarity=0.079 Sum_probs=63.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
.+..+...+.+.|++++|...|+.+.. +.| +...|..++.+|.+.|++++|++.|+++ ...| ++..|..++.+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 444555555566666666666666553 234 3555666666666666666666666644 2233 456777888888
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCc
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
...|++++|+..+++++++.|+.+
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888653
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=1.1e-06 Score=76.74 Aligned_cols=116 Identities=10% Similarity=0.011 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACI 624 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~ 624 (805)
.+..+...+...|++++|...|+...... ..+...+..++..+...|++++|.+.+++. ...| +...|..++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 44445555555666666666666655331 124455666666666666777766666644 1223 4678888889999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChH
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWE 664 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 664 (805)
..|++++|...+++++++.|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999988763
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.51 E-value=7.3e-06 Score=82.94 Aligned_cols=204 Identities=11% Similarity=0.088 Sum_probs=163.2
Q ss_pred CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--CHHHHHHHhhhcCC---CCHhHHHHHHHHH----HhC---CCh
Q 039715 459 ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG--SITDARLVFDMMND---WNEVSWNAMISGY----SMH---GLS 526 (805)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~ 526 (805)
..++|....+.++..+ +.+..+++.-...+...| +++++++.++.+.. ++..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3457888888888876 446677888888888888 99999999998873 3666788766666 555 789
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC------
Q 039715 527 AEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLE--QGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH------ 596 (805)
Q Consensus 527 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~------ 596 (805)
++++++++++.+. .| |...+..-...+.+.|.++ +++++++.+.+. .| +...|+.-..++.+.|+
T Consensus 127 ~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 127 YREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhh
Confidence 9999999999985 45 5567777777778888888 999999999854 45 56677777777777776
Q ss_pred HHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhccC---CCCcchHHHHHHHHHhcCChHHHhh
Q 039715 597 LDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEI-GRLSAQHILDFE---PEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 597 ~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++++++.++++ ... .|...|+.+...+...|+... ....++++++++ |.++.++..|+++|.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 89999998765 233 477899999999999887444 556888888876 8888999999999999999999976
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=4.8e-07 Score=81.53 Aligned_cols=107 Identities=7% Similarity=-0.024 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
.+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|++.|+++ ...| ++..|..++.+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4555556666777777777777776633 34 4566667777777777777777777655 2233 456788888899
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNI 656 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 656 (805)
...|++++|+..+++++++.|+++........+
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 999999999999999999999887765544433
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=6.1e-07 Score=93.46 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=102.0
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMV 588 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 588 (805)
+...|..+...|.+.|++++|+..|++.++. .|+...+ ..+++...- . -....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ-A--------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-H--------HHHHHHHHHH
Confidence 4556777777777777777777777777773 3432100 001111110 0 0135677788
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 039715 589 SLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 666 (805)
.+|.+.|++++|++.++++ ...| +...|..+..+|...|++++|+..++++++++|+++.++..++.+|...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888765 2234 5778999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 039715 667 AS 668 (805)
Q Consensus 667 ~~ 668 (805)
.+
T Consensus 284 ~~ 285 (336)
T 1p5q_A 284 EK 285 (336)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=1.6e-06 Score=77.39 Aligned_cols=88 Identities=13% Similarity=-0.004 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYA 658 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 658 (805)
...+..+...+.+.|++++|...|++. ...| +...|..++.++...|++++|+..++++++++|+++..+..+|.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345556667777777777777777755 2233 56678888888888888888888888888888888888888888888
Q ss_pred hcCChHHHhh
Q 039715 659 MARSWEKAAS 668 (805)
Q Consensus 659 ~~g~~~~a~~ 668 (805)
..|++++|.+
T Consensus 98 ~~g~~~~A~~ 107 (142)
T 2xcb_A 98 QLGDLDGAES 107 (142)
T ss_dssp HTTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 8888888876
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=2.5e-06 Score=87.00 Aligned_cols=162 Identities=6% Similarity=-0.131 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCCC---C------HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC---CC--HH
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMNDW---N------EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR---PN--NL 546 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~--~~ 546 (805)
.+...+..|...|++++|.+.+.+..+. . ...+..+...+...|++++|+..|++..+...+ +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445566777888888888887654321 1 123444666677788899999988888763211 11 33
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCCC-H
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-----IEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQPS-V 613 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p~-~ 613 (805)
++..+...|...|++++|..+|+++.+.....|+ ...+..++..|.+.|++++|.+.+++. ..... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6778888888889999999998888733222232 257888888899999999999888754 11111 5
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhcc
Q 039715 614 MIWRALLGACIIHNNVEIG-RLSAQHILDF 642 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 642 (805)
.+|..++..|...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888889999999999 7778888764
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=3.3e-07 Score=79.95 Aligned_cols=86 Identities=7% Similarity=-0.050 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
.+..++..+.+.|++++|++.|++. ...| +...|..++.++...|++++|+..++++++++|+++.++..+|.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444555555555666665555543 1122 4455666666666666666666666666666666666666666666666
Q ss_pred CChHHHhh
Q 039715 661 RSWEKAAS 668 (805)
Q Consensus 661 g~~~~a~~ 668 (805)
|++++|.+
T Consensus 86 ~~~~~A~~ 93 (126)
T 3upv_A 86 KEYASALE 93 (126)
T ss_dssp TCHHHHHH
T ss_pred hCHHHHHH
Confidence 66666655
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.42 E-value=2.7e-06 Score=77.96 Aligned_cols=118 Identities=8% Similarity=0.068 Sum_probs=73.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACI 624 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~ 624 (805)
+..+...+...|++++|...|+..... .| +...+..++..+.+.|++++|.+.+++. ... .+...|..++..+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 333444444555555555555554432 22 3445555555556666666666655543 112 34567778888888
Q ss_pred HcCCHHHHHHHHHHHhccCCCCcchHHHH--HHHHHhcCChHHHhh
Q 039715 625 IHNNVEIGRLSAQHILDFEPEDEATHVLL--SNIYAMARSWEKAAS 668 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~ 668 (805)
..|++++|+..+++++++.|++...+..+ +..+...|++++|.+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887777444 444777888888765
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=8.8e-07 Score=84.35 Aligned_cols=163 Identities=8% Similarity=-0.021 Sum_probs=106.1
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH
Q 039715 485 LIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLL 561 (805)
Q Consensus 485 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 561 (805)
.+......|++++|.+.++..... ....|..+...+...|++++|+..|++.++. .|+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hH
Confidence 344455557777777777654322 4556777888888889999999999988873 3332111000 00
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039715 562 EQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHI 639 (805)
Q Consensus 562 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 639 (805)
..-. .. .....|..+..+|.+.|++++|+..+++. ... .+...|..++.+|...|++++|+..++++
T Consensus 80 ~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000 00 01345667777788888888888877755 223 35678999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 640 LDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 640 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++++|+++.++..++.++...|+.+++.+
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888764
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=2.2e-06 Score=81.61 Aligned_cols=153 Identities=12% Similarity=-0.017 Sum_probs=94.8
Q ss_pred hcCCHHHHHH---HhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHH
Q 039715 491 KCGSITDARL---VFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQR----GWRP-NNLTFVGVLSACSNGGLLE 562 (805)
Q Consensus 491 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~ 562 (805)
..|++++|.+ .+..-+......|..+...|...|++++|+..|++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777777 554433335567777777777777777777777776651 1112 1235666666777778888
Q ss_pred HHHHHHHHHHHhcCCCC-C----hHHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC----HHHHHHHHHHHHHcCCH
Q 039715 563 QGEAYFKSMVANYGIEP-C----IEHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS----VMIWRALLGACIIHNNV 629 (805)
Q Consensus 563 ~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~ 629 (805)
+|..++++..+...-.+ + ...+..+...+...|++++|...+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88887777664322122 1 244666777777778887777777644 11122 22356677777788888
Q ss_pred HHHHHHHHHHhccC
Q 039715 630 EIGRLSAQHILDFE 643 (805)
Q Consensus 630 ~~a~~~~~~~~~~~ 643 (805)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777653
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.37 E-value=2.1e-06 Score=84.86 Aligned_cols=173 Identities=10% Similarity=-0.100 Sum_probs=133.6
Q ss_pred hcCCHHHHHHHhhhcCC---CCHhHHHHH-------HHHHHhCCChHHHHHHHHHHHHcCCCCCHH--------------
Q 039715 491 KCGSITDARLVFDMMND---WNEVSWNAM-------ISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-------------- 546 (805)
Q Consensus 491 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 546 (805)
..++.+.|.+.|.++.. .....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 56888999999988863 356788888 5667777777777777776655 344221
Q ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCH----H
Q 039715 547 --------TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSV----M 614 (805)
Q Consensus 547 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~----~ 614 (805)
....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|+..|++....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 233455668889999999999988763 3564446667778999999999999999977433433 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC--CC-CcchHHHHHHHHHhcCChHHHhh
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILDFE--PE-DEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
++..++.++...|++++|+..++++.... |. .+.....++.++.+.|+.++|..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 78889999999999999999999998644 55 55688899999999999999987
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.36 E-value=3.5e-06 Score=78.44 Aligned_cols=129 Identities=9% Similarity=0.084 Sum_probs=97.4
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHH-HHhcCCH
Q 039715 521 SMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSL-LGRAGHL 597 (805)
Q Consensus 521 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~~ 597 (805)
...|++++|+..|++..+. .| +...+..+...+...|++++|..+|+++.+. .| +...+..++.+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 3567788888888888774 34 4567777888888888999999888888754 34 56677778888 7788888
Q ss_pred --HHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 598 --DKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 598 --~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
++|...++++ ...| +...|..++..+...|++++|+..+++++++.|+++.....+.
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 9998888865 2234 5678889999999999999999999999999998876655443
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.36 E-value=7.4e-07 Score=79.66 Aligned_cols=112 Identities=7% Similarity=-0.024 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
.+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|+..|++. ...| ++..|..++.++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444555566667777777777766633 34 4556666777777777777777777654 1223 456788888889
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
...|++++|+..+++++++.|+++........+....+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999988877766655544433
No 143
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=6.1e-06 Score=73.77 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=71.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALL 620 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~ 620 (805)
.+..+...+...|++++|..+|+... ...|+ ...+..+...|.+.|++++|++.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 34444444444455555555544444 22333 344555556666666666666665543 1123 566788888
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
.++...|++++|+..+++++++.|++...+..+..+....
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 8899999999999999999999999988888887775443
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=9.1e-06 Score=69.12 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=74.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
.+..+...+...|++++|...|+..... .| +...+..++..+.+.|++++|.+.+++. ...| +...|..++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444445555566666666666655532 23 4455666666666666666666666644 1223 567788888889
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
...|++++|...+++++++.|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999988888887764
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.32 E-value=9.7e-06 Score=77.09 Aligned_cols=155 Identities=12% Similarity=-0.017 Sum_probs=99.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHhhhcCC------C---CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCC-C--
Q 039715 478 DVVVANALIDMYAKCGSITDARLVFDMMND------W---NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG-WRP-N-- 544 (805)
Q Consensus 478 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-~-- 544 (805)
...++..+...|...|++++|...|++... . ....++.+...|...|++++|+..+++..+.- -.+ +
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 345556666666677777777766665542 1 34567777888888888888888888776520 012 2
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHH
Q 039715 545 --NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRA 618 (805)
Q Consensus 545 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~ 618 (805)
...+..+...+...|++++|..++++......-..+ ...+..+...+.+.|++++|.+.+++.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------- 173 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA----------- 173 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH-----------
Confidence 234666777788889999999888887643211122 234677888899999999998887654
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCC
Q 039715 619 LLGACIIHNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~~~p 644 (805)
+......|+......+...+-...|
T Consensus 174 -l~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 174 -RDIFAELEDSEAVNELMTRLNGLEH 198 (203)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHcCCHHHHHHHHhcccchhh
Confidence 2334455555544444444444443
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.29 E-value=4.7e-06 Score=76.41 Aligned_cols=107 Identities=11% Similarity=0.020 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHH
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGAC 623 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~ 623 (805)
.+..+...+...|++++|+..|++..+. .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4445555555666666666666665532 23 4556666666666677777776666654 2233 467889999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 039715 624 IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNI 656 (805)
Q Consensus 624 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 656 (805)
...|++++|+..++++++++|+++..+...+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999866555443
No 147
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.28 E-value=8.1e-07 Score=79.14 Aligned_cols=73 Identities=8% Similarity=0.005 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC--------CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI--------PFQPSV-MIW----RALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~--------~~~p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
.|..+..++.+.|++++|+..+++. ++.|+. ..| ...+.++...|++++|+..|+++++++|++.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 4555555555555555555554432 336764 478 888899999999999999999999999988776
Q ss_pred HHHHHH
Q 039715 650 HVLLSN 655 (805)
Q Consensus 650 ~~~l~~ 655 (805)
+.-+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 554443
No 148
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.26 E-value=1.4e-05 Score=72.96 Aligned_cols=126 Identities=10% Similarity=0.023 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMV 588 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 588 (805)
..|..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...+++..+. .| +...+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 34555666666666666666666666653 33 3445556666666666777777766666643 23 455666666
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Q 039715 589 SLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRA--LLGACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~ 641 (805)
..|.+.|++++|.+.++++ ...| +...|.. ++..+...|++++|+..+++..+
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6777777777777766654 1122 3334433 33335666777777777776654
No 149
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.26 E-value=2e-06 Score=74.34 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 584 YTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 584 ~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
+..++..+.+.|++++|+..+++. ...| +...|..++.++...|+.++|+..++++++++|+++.++..|+.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344555666666676666666654 2233 45666677777777777777777777777777777777777777777777
Q ss_pred ChHHHhh
Q 039715 662 SWEKAAS 668 (805)
Q Consensus 662 ~~~~a~~ 668 (805)
++++|.+
T Consensus 100 ~~~~A~~ 106 (121)
T 1hxi_A 100 NANAALA 106 (121)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 7777655
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.25 E-value=9.6e-06 Score=70.43 Aligned_cols=109 Identities=9% Similarity=-0.038 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACI 624 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~ 624 (805)
+......+...|++++|...|++..+. .| +...|..++.+|.+.|++++|++.+++. ...| +...|..++.++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 334444455555555555555555532 23 3455556666666666666666666544 1233 4667888888888
Q ss_pred HcCCHHHHHHHHHHHhccC------CCCcchHHHHHHHHHh
Q 039715 625 IHNNVEIGRLSAQHILDFE------PEDEATHVLLSNIYAM 659 (805)
Q Consensus 625 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 659 (805)
..|++++|+..++++++++ |++......+..+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999988 8888877777766543
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=3.4e-06 Score=73.55 Aligned_cols=87 Identities=8% Similarity=0.058 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcc-------hHHH
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEA-------THVL 652 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 652 (805)
..+..++..+.+.|++++|++.|++. .+.| +...|..++.+|...|++++|+..+++++++.|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888888999999999988865 3344 5778999999999999999999999999999987754 6777
Q ss_pred HHHHHHhcCChHHHhh
Q 039715 653 LSNIYAMARSWEKAAS 668 (805)
Q Consensus 653 l~~~~~~~g~~~~a~~ 668 (805)
+|.+|...|++++|.+
T Consensus 89 lg~~~~~~~~~~~A~~ 104 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQ 104 (127)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 8999999999999987
No 152
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.22 E-value=0.00032 Score=71.66 Aligned_cols=230 Identities=11% Similarity=0.022 Sum_probs=153.8
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCCChh-hHHHHHHHHhccC-CchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-C-
Q 039715 418 GYVQLGEVGKAMIMFSKMLEEQVPATEV-TYSSVLRACASLA-ALEPGMQVHCLTVKANYDMDVVVANALIDMYAKC-G- 493 (805)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g- 493 (805)
.....+..++|++++.+++.. .|+.. .++.--..+...+ .++++...++.++... +.+..+|+.-...+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334445556777777777764 34443 3444444445555 4777777777777665 44566677666666665 6
Q ss_pred CHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--
Q 039715 494 SITDARLVFDMMNDW---NEVSWNAMISGYSMHGLSA--------EVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGL-- 560 (805)
Q Consensus 494 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-- 560 (805)
++++++++++++.+. |..+|+--.-.+.+.|.++ ++++.++++++.. .-|...++.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 788888888888754 6667777666666666666 8999999999853 2255677777777777775
Q ss_pred -----HHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCH--------------------HHHHHHHHcCC-C----
Q 039715 561 -----LEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHL--------------------DKAAKLIEGIP-F---- 609 (805)
Q Consensus 561 -----~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~--------------------~eA~~~~~~~~-~---- 609 (805)
++++++++++++. +.| |...|+-+-.++.+.|+. .+..++..++. .
T Consensus 219 ~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 6888888888774 356 566777777777777653 44455555442 1
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCCcchHHHHH
Q 039715 610 ---QPSVMIWRALLGACIIHNNVEIGRLSAQHIL-DFEPEDEATHVLLS 654 (805)
Q Consensus 610 ---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 654 (805)
.+.+..+.-|+..|...|+.++|.++++.+. +.+|-....+...+
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2567788889999999999999999999986 67886655555443
No 153
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=8.9e-07 Score=96.91 Aligned_cols=113 Identities=10% Similarity=0.040 Sum_probs=52.3
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCH
Q 039715 520 YSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHL 597 (805)
Q Consensus 520 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 597 (805)
+.+.|++++|++.|++.++. .|+ ...+..+..++...|++++|+..+++..+ +.| +...|..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCH
Confidence 34455555555555555552 332 33455555555555555555555555542 233 344555555555555555
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 039715 598 DKAAKLIEGI-PFQP-SVMIWRALLGA--CIIHNNVEIGRLSAQ 637 (805)
Q Consensus 598 ~eA~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~a~~~~~ 637 (805)
++|++.++++ ...| +...|..+..+ +...|++++|+..++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555543 1112 12233333333 455555666666555
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.21 E-value=0.00011 Score=74.74 Aligned_cols=191 Identities=11% Similarity=-0.004 Sum_probs=129.0
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--CHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCC-hHHHHHHH
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG--SITDARLVFDMMN---DWNEVSWNAMISGYSMHGL-SAEVLKVF 533 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~ 533 (805)
++++..++..++... +-+..+|+.-...+.+.| .+++++++++++. .+|-.+|+--.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555666666554 446666766666666666 4788888888876 3477788887777778887 58899999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhc---
Q 039715 534 DLMQQRGWRP-NNLTFVGVLSACSNG--------------GLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRA--- 594 (805)
Q Consensus 534 ~~m~~~g~~p-~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--- 594 (805)
+++++. .| |...++.....+.+. +.+++++++++.... +.| |...|+-+-.++.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCc
Confidence 988885 44 444555544444333 457788888888774 356 556666666666655
Q ss_pred --------CCHHHHHHHHHcC-CCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 595 --------GHLDKAAKLIEGI-PFQPSVMIWRALLGAC-----IIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 595 --------g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
+.++++++.++++ ...||. .|.-+..+. ...|..++....+.++.+++|...+.|..|..-+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4678888888866 345654 454333222 1357788999999999999998888887775543
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.20 E-value=7e-06 Score=72.41 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYA 658 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 658 (805)
...+..++..+.+.|++++|...|++. ...| +...|..++..+...|++++|+..++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 444555555555555555555555433 1122 34555566666666666666666666666666666666666666666
Q ss_pred hcCChHHHhh
Q 039715 659 MARSWEKAAS 668 (805)
Q Consensus 659 ~~g~~~~a~~ 668 (805)
..|++++|..
T Consensus 89 ~~~~~~~A~~ 98 (137)
T 3q49_B 89 EMESYDEAIA 98 (137)
T ss_dssp HTTCHHHHHH
T ss_pred HHhhHHHHHH
Confidence 6666666654
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.20 E-value=1.1e-05 Score=71.11 Aligned_cols=115 Identities=10% Similarity=-0.010 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHH
Q 039715 544 NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALL 620 (805)
Q Consensus 544 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~ 620 (805)
+...+..+...+...|++++|...|+..... .| +...+..++.+|.+.|++++|...+++. ...| +...|..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3445555556666666666666666665533 23 3456666666666677777776666644 1223 466788888
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCC-----CcchHHHHHHHHHhcC
Q 039715 621 GACIIHNNVEIGRLSAQHILDFEPE-----DEATHVLLSNIYAMAR 661 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g 661 (805)
.++...|++++|+..+++++++.|+ +......+..+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999888887 5555555555544433
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.20 E-value=1e-05 Score=88.02 Aligned_cols=138 Identities=10% Similarity=0.061 Sum_probs=100.4
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMV 588 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 588 (805)
....|..+...|.+.|++++|+..|++.++. .|+...+ .-++..+ ... -....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~-~~~--------~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKA-SES--------FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHH-HHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHH-HHH--------HHHHHHHHHH
Confidence 4557777888888888888888888888773 3332110 0011110 000 0135677888
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 039715 589 SLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 666 (805)
.+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..++++++++|++..++..++.++...|++++|
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888765 2233 5778999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 039715 667 AS 668 (805)
Q Consensus 667 ~~ 668 (805)
.+
T Consensus 405 ~~ 406 (457)
T 1kt0_A 405 DR 406 (457)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=4.1e-06 Score=71.32 Aligned_cols=89 Identities=9% Similarity=0.080 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
....+..++..+...|++++|.+.+++. ... .+...|..++..+...|++++|+..+++++++.|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999876 223 36788999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHhh
Q 039715 658 AMARSWEKAAS 668 (805)
Q Consensus 658 ~~~g~~~~a~~ 668 (805)
...|++++|.+
T Consensus 83 ~~~~~~~~A~~ 93 (118)
T 1elw_A 83 EFLNRFEEAKR 93 (118)
T ss_dssp HHTTCHHHHHH
T ss_pred HHHhhHHHHHH
Confidence 99999999987
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=4.8e-06 Score=76.38 Aligned_cols=89 Identities=12% Similarity=0.003 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIY 657 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 657 (805)
+...+..+...|.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888899999999999999999876 2334 6789999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHhh
Q 039715 658 AMARSWEKAAS 668 (805)
Q Consensus 658 ~~~g~~~~a~~ 668 (805)
...|++++|.+
T Consensus 90 ~~~g~~~~A~~ 100 (164)
T 3sz7_A 90 FDMADYKGAKE 100 (164)
T ss_dssp HHTTCHHHHHH
T ss_pred HHccCHHHHHH
Confidence 99999999988
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.18 E-value=1.2e-05 Score=69.91 Aligned_cols=110 Identities=6% Similarity=-0.056 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCh-HHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCI-EHYTSMV 588 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li 588 (805)
..|..++..+.+.|++++|++.|++.++ +.|+ ...|..+..++...|++++|+..++..++. .|+. ..+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH-
Confidence 4566677777777777777777777776 3454 345666666667777777777776666532 1210 001001
Q ss_pred HHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 589 SLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
..+|..++.++...|++++|+..++++++..|+ +....
T Consensus 83 ------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 83 ------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 134666777777888888888888888887773 44333
No 161
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.16 E-value=3.7e-05 Score=85.56 Aligned_cols=169 Identities=8% Similarity=-0.058 Sum_probs=138.1
Q ss_pred cCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 039715 492 CGSITDARLVFDMMND---WNEVSWNAMISGYSMHGL----------SAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSN 557 (805)
Q Consensus 492 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 557 (805)
...-++|.+.++++.. .+...|+.-...+...|+ ++++++.++++.+. .| +..+|..-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3445677888887763 356788887777777777 89999999999984 56 45578777778888
Q ss_pred CC--CHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcC-CHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc-----
Q 039715 558 GG--LLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAG-HLDKAAKLIEGI-PFQP-SVMIWRALLGACIIH----- 626 (805)
Q Consensus 558 ~g--~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g-~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~----- 626 (805)
.| +++++++.++++.+. +| +...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88 779999999999954 45 6677888888888999 899999999877 4445 677899988887763
Q ss_pred ---------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 627 ---------NNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 627 ---------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
+.++++++.++++++++|++..+|..++.++.+.|+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999999666
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.16 E-value=2.4e-06 Score=78.19 Aligned_cols=56 Identities=9% Similarity=0.117 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...|..+..+|...|++++|+..++++++++|+++.+|..+|.+|...|++++|..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 118 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence 35677777778888888888888888888888888888888888888888888876
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.15 E-value=3.2e-05 Score=78.09 Aligned_cols=181 Identities=8% Similarity=-0.104 Sum_probs=112.2
Q ss_pred HhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHH
Q 039715 454 CASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 454 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 530 (805)
+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...|++++|+
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 92 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAI 92 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 333333333333333333332 33566778888889999999999999988774 36778889999999999999999
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-C
Q 039715 531 KVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-P 608 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~ 608 (805)
..|++..+. .|+.. .+...+.... ...++.... ..... ...++......+...+ .|+.++|.+.+++. .
T Consensus 93 ~~~~~al~l--~p~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~ 163 (281)
T 2c2l_A 93 ANLQRAYSL--AKEQRLNFGDDIPSAL---RIAKKKRWN-SIEER-RIHQESELHSYLTRLI--AAERERELEECQRNHE 163 (281)
T ss_dssp HHHHHHHHH--HHHTTCCCCSHHHHHH---HHHHHHHHH-HHHHT-CCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGT
T ss_pred HHHHHHHHh--CccchhhHHHHHHHHH---HHHHHHHHH-HHHHH-HHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhc
Confidence 999998873 34221 1111111111 112222222 22222 4445566655555543 68999999988765 4
Q ss_pred CCCCH-HHHHHHHHHHHHc-CCHHHHHHHHHHHhccCC
Q 039715 609 FQPSV-MIWRALLGACIIH-NNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 609 ~~p~~-~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p 644 (805)
..|+. .....+...+... +.+++|.++++++.+..+
T Consensus 164 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 164 GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 56654 3455555555555 678899999998887543
No 164
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.14 E-value=6.8e-05 Score=64.24 Aligned_cols=92 Identities=13% Similarity=0.207 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLL 591 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 591 (805)
.|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|..+++.+.+. ...+...+..++..|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 34444444444444444444444444421 112334444444444445555555555444432 111334444444555
Q ss_pred HhcCCHHHHHHHHHc
Q 039715 592 GRAGHLDKAAKLIEG 606 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~ 606 (805)
.+.|++++|.+.+++
T Consensus 88 ~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 88 YKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHH
Confidence 555555555555443
No 165
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.13 E-value=1.3e-05 Score=83.39 Aligned_cols=138 Identities=12% Similarity=-0.002 Sum_probs=86.7
Q ss_pred cCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-C---------------HhHHHHHHH
Q 039715 457 LAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND--W-N---------------EVSWNAMIS 518 (805)
Q Consensus 457 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~li~ 518 (805)
++++++|...+....+.. +.+...+..+...|.+.|++++|...|++... + + ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 445555555544433321 22467788999999999999999999998762 2 2 356777777
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC
Q 039715 519 GYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH 596 (805)
Q Consensus 519 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 596 (805)
+|.+.|++++|+..|++.++. .| +...+..+..++...|++++|+..|+++.+. .| +...+..+..++.+.|+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHH
Confidence 777777777777777777763 34 3445666666666666666666666666532 33 23344444444444444
Q ss_pred HHHH
Q 039715 597 LDKA 600 (805)
Q Consensus 597 ~~eA 600 (805)
.++|
T Consensus 280 ~~~a 283 (336)
T 1p5q_A 280 QLAR 283 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.13 E-value=6.1e-06 Score=69.52 Aligned_cols=85 Identities=12% Similarity=0.031 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHHh
Q 039715 584 YTSMVSLLGRAGHLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPE--DEATHVLLSNIYAM 659 (805)
Q Consensus 584 ~~~li~~~~~~g~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~ 659 (805)
+..++..+.+.|++++|...+++. ... .+...|..++..+...|++++|+..+++++++.|+ ++..+..++.+|..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 333444444444444444444432 111 23344444555555555555555555555555555 45555555555555
Q ss_pred c-CChHHHhh
Q 039715 660 A-RSWEKAAS 668 (805)
Q Consensus 660 ~-g~~~~a~~ 668 (805)
. |++++|.+
T Consensus 89 ~~~~~~~A~~ 98 (112)
T 2kck_A 89 IEGKEVEAEI 98 (112)
T ss_dssp CSSCSHHHHH
T ss_pred HhCCHHHHHH
Confidence 5 55555544
No 167
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.13 E-value=9.6e-06 Score=85.35 Aligned_cols=137 Identities=7% Similarity=-0.003 Sum_probs=106.1
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMV 588 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 588 (805)
...|..+...+.+.|++++|+..|++.++. .|+.. ..-..+ ... ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~-------~~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDA-------DGA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHH-------HHG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChH-------HHH---HHHHHHHHHHHHHH
Confidence 446777888888888888888888888762 11110 000111 111 1223 356788899
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHH
Q 039715 589 SLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKA 666 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 666 (805)
.+|.+.|++++|++.++++ ...| +...|..+..+|...|++++|+..++++++++|++...+..++.++...|+.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998866 4445 5678999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 039715 667 AS 668 (805)
Q Consensus 667 ~~ 668 (805)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=5.2e-06 Score=73.93 Aligned_cols=56 Identities=11% Similarity=-0.023 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CCCCcchH----HHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDF-------EPEDEATH----VLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~ 668 (805)
...|..+..++...|++++|+..+++++++ +|+++.+| ..+|.+|...|++++|..
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~ 123 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence 348999999999999999999999999999 99999999 999999999999999988
No 169
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.10 E-value=2.5e-05 Score=72.44 Aligned_cols=116 Identities=15% Similarity=0.070 Sum_probs=71.3
Q ss_pred hccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHhHHHHHHHH-HHhCCCh--HH
Q 039715 455 ASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMND---WNEVSWNAMISG-YSMHGLS--AE 528 (805)
Q Consensus 455 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~-~~~~g~~--~~ 528 (805)
...|++++|...+...++.. +.+...+..+...|...|++++|...|++..+ .+...|..+... |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34556666666666666554 34556666777777777777777777766542 355666666666 6666776 77
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 529 VLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 529 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
|+..|+++.+. .|+ ...+..+...+...|++++|...|+.+.+
T Consensus 100 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777777663 343 44555666666677777777777776663
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=1.9e-05 Score=70.41 Aligned_cols=89 Identities=10% Similarity=0.066 Sum_probs=81.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
+...+..++..+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|+..+++++++.|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5678888999999999999999999976 45676 578999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHhh
Q 039715 655 NIYAMARSWEKAAS 668 (805)
Q Consensus 655 ~~~~~~g~~~~a~~ 668 (805)
.+|...|++++|.+
T Consensus 107 ~~~~~~~~~~~A~~ 120 (148)
T 2dba_A 107 QALEKLGRLDQAVL 120 (148)
T ss_dssp HHHHHHTCHHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 99999999999987
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.08 E-value=6.4e-06 Score=90.05 Aligned_cols=113 Identities=8% Similarity=0.075 Sum_probs=99.1
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCH
Q 039715 553 SACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNV 629 (805)
Q Consensus 553 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 629 (805)
..+...|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..++.+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3466789999999999999854 45 5789999999999999999999999866 3345 577899999999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHH--HHhcCChHHHhh
Q 039715 630 EIGRLSAQHILDFEPEDEATHVLLSNI--YAMARSWEKAAS 668 (805)
Q Consensus 630 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~ 668 (805)
++|+..+++++++.|+++..+..++.+ +...|++++|.+
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988 999999999988
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=1.6e-05 Score=68.58 Aligned_cols=96 Identities=16% Similarity=0.090 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHH
Q 039715 549 VGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACII 625 (805)
Q Consensus 549 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~ 625 (805)
..+...+...|++++|+..|+...+. .| +...|..+..++.+.|++++|+..+++. ...| +...|..++.++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444556666777777776666633 34 4556666677777777777777776654 2234 46678888888889
Q ss_pred cCCHHHHHHHHHHHhccCCCCc
Q 039715 626 HNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 626 ~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
.|++++|+..++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999988654
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=8.6e-06 Score=74.46 Aligned_cols=139 Identities=9% Similarity=-0.006 Sum_probs=93.2
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMV 588 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 588 (805)
...|......+.+.|++++|+..|++.++. .|. ........... +.. +.| +...|..+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~--~~~----------~~~~~~~~~~~--~~~------~~~~~~~~~~nla 70 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR--LDT----------LILREKPGEPE--WVE------LDRKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHTSCTTSHH--HHH------HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------hcccCCCCHHH--HHH------HHHHHHHHHHHHH
Confidence 445666677777777777777777776652 000 00000000000 000 012 345778888
Q ss_pred HHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc-chHHHHHHHHHhcCChHH
Q 039715 589 SLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE-ATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~ 665 (805)
.+|.+.|++++|+..+++. ...| +...|..++.+|...|++++|+..++++++++|+++ .....|..+....++.++
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999998888765 2334 577899999999999999999999999999999998 667778777776665555
Q ss_pred Hhh
Q 039715 666 AAS 668 (805)
Q Consensus 666 a~~ 668 (805)
..+
T Consensus 151 ~~k 153 (162)
T 3rkv_A 151 DSR 153 (162)
T ss_dssp SSC
T ss_pred HHH
Confidence 433
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.06 E-value=4.2e-05 Score=66.27 Aligned_cols=117 Identities=5% Similarity=-0.096 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLL 591 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 591 (805)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++.+.... |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~----------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE----------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc-----------
Confidence 44555555555555555555555555531 1123344444444444555555555544443221 10
Q ss_pred HhcCCHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 592 GRAGHLDKAAKLIEGIPFQPS----VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
..++ ..+|..++..+...|++++|...+++++++.| ++.....++.++...+
T Consensus 71 -----------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 71 -----------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp -----------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 0122 45677777788888888888888888888888 5666777776665544
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=2.7e-05 Score=67.73 Aligned_cols=109 Identities=10% Similarity=0.006 Sum_probs=65.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC----HHHHHHHHHHHHHc
Q 039715 553 SACSNGGLLEQGEAYFKSMVANYGIEPC-IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS----VMIWRALLGACIIH 626 (805)
Q Consensus 553 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~----~~~~~~l~~~~~~~ 626 (805)
..+...|++++|...|+.+.+...-.+. ...+..++..|.+.|++++|.+.++++ ...|+ ...+..++.++...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3444555555555555555533111110 134555556666666666666666544 11222 45677777888888
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 039715 627 NNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMAR 661 (805)
Q Consensus 627 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 661 (805)
|++++|+..++++++..|+++........+-.-.+
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 88999999999888888888776666555544433
No 176
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=8.7e-06 Score=68.63 Aligned_cols=89 Identities=13% Similarity=0.020 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------cchHH
Q 039715 580 CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPED------EATHV 651 (805)
Q Consensus 580 ~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 651 (805)
+...+..++..+.+.|++++|.+.+++. ...| +...|..++.++...|++++|+..+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888889999998888765 2234 67789999999999999999999999999999998 78889
Q ss_pred HHHHHHHhcCChHHHhh
Q 039715 652 LLSNIYAMARSWEKAAS 668 (805)
Q Consensus 652 ~l~~~~~~~g~~~~a~~ 668 (805)
.++.++...|++++|.+
T Consensus 83 ~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHhHhhhHh
Confidence 99999999999988876
No 177
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.05 E-value=7.5e-05 Score=64.97 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHH
Q 039715 511 VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMV 588 (805)
Q Consensus 511 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 588 (805)
..|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|..+++++.+. .| +...+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la 91 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHHHHH
Confidence 34444444444444444444444444442 22 2334444444444445555555544444422 12 234444444
Q ss_pred HHHHhcCCHHHHHHHHHc
Q 039715 589 SLLGRAGHLDKAAKLIEG 606 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~ 606 (805)
.+|.+.|++++|.+.+++
T Consensus 92 ~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 445555555555554443
No 178
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.03 E-value=8e-05 Score=64.40 Aligned_cols=114 Identities=12% Similarity=0.036 Sum_probs=65.6
Q ss_pred HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHH
Q 039715 510 EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSM 587 (805)
Q Consensus 510 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 587 (805)
...|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++..... .| +...+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 86 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHH
Confidence 345555566666666666666666666653 23 3445555556666666666666666666543 23 34556666
Q ss_pred HHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC
Q 039715 588 VSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN 628 (805)
Q Consensus 588 i~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 628 (805)
+..|.+.|++++|.+.+++. ...| +...|..+..++...|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 66666666666666666544 1222 44556666666555554
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.02 E-value=5.4e-06 Score=71.02 Aligned_cols=107 Identities=19% Similarity=0.172 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHHhcCC-CC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 039715 558 GGLLEQGEAYFKSMVANYGI-EP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGR 633 (805)
Q Consensus 558 ~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 633 (805)
.|++++|+..|++..+. +. .| +...+..++.+|.+.|++++|++.+++. ...| +...|..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666666621 10 23 3456667777777777777777777655 2233 4667888888888999999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCChHH
Q 039715 634 LSAQHILDFEPEDEATHVLLSNIYAMARSWEK 665 (805)
Q Consensus 634 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 665 (805)
..++++++..|+++........+..-.+.+++
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~ 113 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADKLDE 113 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887766655555555555544
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=2.1e-05 Score=84.97 Aligned_cols=181 Identities=10% Similarity=-0.043 Sum_probs=124.1
Q ss_pred HHHhcCCHHHHHHHhhhcCCC--------------------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHH
Q 039715 488 MYAKCGSITDARLVFDMMNDW--------------------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRG-WRPNNL 546 (805)
Q Consensus 488 ~y~~~g~~~~A~~~~~~~~~~--------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ 546 (805)
.+.+.|++++|.+.|..+.+. ...++..++..|...|++++|.+.+.++...- -.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345556666666666555321 01246678888888888888888888776521 112221
Q ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHhc---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-------CCCC
Q 039715 547 ----TFVGVLSACSNGGLLEQGEAYFKSMVANY---GIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-------PFQP 611 (805)
Q Consensus 547 ----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-------~~~p 611 (805)
....+...+...|..+++..+++...... +..+ ....+..|+..|...|++++|.++++++ ..++
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 22223333456788999998888775421 2222 2467788999999999999999998754 1123
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---C----cchHHHHHHHHHhcCChHHHhh
Q 039715 612 S-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPE---D----EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 612 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~----~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
. ..++..++..|...|++++|...+++++.+.|. . ...+..++.++...|+|++|.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2 357888889999999999999999999876432 2 2456778889999999999987
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=1.2e-05 Score=83.49 Aligned_cols=125 Identities=9% Similarity=-0.002 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLL 591 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 591 (805)
.|..+...+.+.|++++|+..|++.++ +.|+... +...|+.+++...+ . ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 455566666677777777777777666 3454331 11222222222111 0 11344444444
Q ss_pred HhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 039715 592 GRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNI 656 (805)
Q Consensus 592 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 656 (805)
.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..++++++++|+++.++..|+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4445555554444433 1122 334444455555555555555555555555555554444444444
No 182
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.00 E-value=0.00019 Score=73.33 Aligned_cols=205 Identities=12% Similarity=0.016 Sum_probs=145.4
Q ss_pred CCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHhhhcCC---CCHhHHHHHHHHHHhC-C-ChHHHHH
Q 039715 458 AALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCG-SITDARLVFDMMND---WNEVSWNAMISGYSMH-G-LSAEVLK 531 (805)
Q Consensus 458 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~ 531 (805)
+..++|.++.+.++..+ +.+..+++.-...+...| .++++++.++.+.. ++..+|+.-...+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34457888888888876 446677888777788888 59999999998873 4777888887777776 7 8899999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCC-----
Q 039715 532 VFDLMQQRGWRP-NNLTFVGVLSACSNGGLLE--------QGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGH----- 596 (805)
Q Consensus 532 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~----- 596 (805)
+++++++. .| |...+..-...+.+.|.++ +++++++++.+. .| +...|+....++.+.|+
T Consensus 147 ~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 147 YIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccch
Confidence 99999984 45 4556665555555555555 888898888854 45 66778888888888876
Q ss_pred --HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHhccC------CCC
Q 039715 597 --LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNV--------------------EIGRLSAQHILDFE------PED 646 (805)
Q Consensus 597 --~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~ 646 (805)
++++++.++++ ...| |...|+-+-+.+...|+. ..-......+.... +..
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 68888888755 2334 677898888888777654 22223333333222 345
Q ss_pred cchHHHHHHHHHhcCChHHHhh
Q 039715 647 EATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 647 ~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+-+...|+++|...|+.++|.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~ 323 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAK 323 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHH
Confidence 5667789999999999888876
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=2.9e-05 Score=70.26 Aligned_cols=131 Identities=11% Similarity=-0.021 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHH
Q 039715 513 WNAMISGYSMHGLSAEVLKVFDLMQQRGWR-PN----NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEH 583 (805)
Q Consensus 513 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 583 (805)
+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|..+++...+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444455555555555555544432100 11 123444455555556666666655554432111111 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 584 YTSMVSLLGRAGHLDKAAKLIEGI-------PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 584 ~~~li~~~~~~g~~~eA~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
+..+...+...|++++|.+.+++. ...+ ....+..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 555556666666666666655533 1011 12356666777777788888888877777654
No 184
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.98 E-value=4.9e-05 Score=63.74 Aligned_cols=98 Identities=7% Similarity=-0.054 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC---CHHHHHHHHHHH
Q 039715 548 FVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP---SVMIWRALLGAC 623 (805)
Q Consensus 548 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p---~~~~~~~l~~~~ 623 (805)
+..+...+...|++++|...|+++.+.. ..+...+..++..|.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3344444555555555555555554321 123445555666666666666666666544 1223 466777888888
Q ss_pred HHc-CCHHHHHHHHHHHhccCCCCc
Q 039715 624 IIH-NNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 624 ~~~-g~~~~a~~~~~~~~~~~p~~~ 647 (805)
... |++++|++.++++++..|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888 888888888888888888654
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.97 E-value=0.00064 Score=69.09 Aligned_cols=155 Identities=12% Similarity=0.027 Sum_probs=117.5
Q ss_pred HHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCC-HHHHHHH
Q 039715 495 ITDARLVFDMMN---DWNEVSWNAMISGYSMHGL--SAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGL-LEQGEAY 567 (805)
Q Consensus 495 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-~~~a~~~ 567 (805)
+++++.+++.+. .++..+|+.-...+...|+ +++++++++++.+. .| |...|+.-..++.+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 577888887776 3578899988888888884 89999999999995 45 55577776667777887 6899999
Q ss_pred HHHHHHhcCCCC-ChHHHHHHHHHHHhc--------------CCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc----
Q 039715 568 FKSMVANYGIEP-CIEHYTSMVSLLGRA--------------GHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIH---- 626 (805)
Q Consensus 568 ~~~m~~~~~~~p-~~~~~~~li~~~~~~--------------g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~---- 626 (805)
++.+.+. .| |...|+....++.+. +.++++++++++. ...| |...|+-+-+.+...
T Consensus 168 ~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 9999864 45 666777777666655 5688999988865 2334 678898777776655
Q ss_pred -------CCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 627 -------NNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 627 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
+.++++++.++++++++|++.-.+..++
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence 4588999999999999998854444443
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00012 Score=79.01 Aligned_cols=125 Identities=9% Similarity=-0.082 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCC-----C----CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC----CCC-HHHH
Q 039715 483 NALIDMYAKCGSITDARLVFDMMND-----W----NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW----RPN-NLTF 548 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~-~~t~ 548 (805)
+.+...+...|+.+.|.++++.... . -..++..++..|...|++++|+.++++....-. +|. ...+
T Consensus 99 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 178 (434)
T 4b4t_Q 99 TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVH 178 (434)
T ss_dssp HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 3344444556677777766665431 1 134667778888888888888888887765311 222 2367
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 549 VGVLSACSNGGLLEQGEAYFKSMVANYGIEPC-----IEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 549 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
..++..|...|++++|..++++......-.++ ...+..++..+...|++++|...|.+.
T Consensus 179 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 179 LLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77778888889999999888877643211121 256777778888889998888776543
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.93 E-value=4.8e-06 Score=71.33 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=64.3
Q ss_pred hcCCHHHHHHHHHcC-CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHh
Q 039715 593 RAGHLDKAAKLIEGI-PF---QPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAA 667 (805)
Q Consensus 593 ~~g~~~eA~~~~~~~-~~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 667 (805)
..|++++|+..|++. .. .|+ ...|..++..|...|++++|+..+++++++.|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468899999999876 33 253 4689999999999999999999999999999999999999999999999999997
Q ss_pred h
Q 039715 668 S 668 (805)
Q Consensus 668 ~ 668 (805)
.
T Consensus 82 ~ 82 (117)
T 3k9i_A 82 E 82 (117)
T ss_dssp H
T ss_pred H
Confidence 7
No 188
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.92 E-value=2.2e-05 Score=74.50 Aligned_cols=87 Identities=8% Similarity=-0.059 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC----CCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGI----PFQPS--------------VMIWRALLGACIIHNNVEIGRLSAQHILDFE 643 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~----~~~p~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 643 (805)
..+..++..+.+.|++++|.+.|++. |..|+ ...|..+..+|...|++++|+..++++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34455556666666666666666543 11111 3688899999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHhh
Q 039715 644 PEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 644 p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|+++.++..+|.+|...|++++|.+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999999999999987
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.91 E-value=3.8e-05 Score=61.81 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYA 658 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 658 (805)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777788888888888888888765 2233 56789999999999999999999999999999999999999999998
Q ss_pred hcC
Q 039715 659 MAR 661 (805)
Q Consensus 659 ~~g 661 (805)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 765
No 190
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.89 E-value=2.5e-05 Score=67.93 Aligned_cols=84 Identities=13% Similarity=0.064 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---cchHHHHHHH
Q 039715 585 TSMVSLLGRAGHLDKAAKLIEGI-PFQPS-V---MIWRALLGACIIHNNVEIGRLSAQHILDFEPED---EATHVLLSNI 656 (805)
Q Consensus 585 ~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 656 (805)
..++..+.+.|++++|.+.|+++ ...|+ . ..|..++.++...|++++|+..++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 45677888999999999999876 11232 2 478889999999999999999999999999999 7789999999
Q ss_pred HHhcCChHHHhh
Q 039715 657 YAMARSWEKAAS 668 (805)
Q Consensus 657 ~~~~g~~~~a~~ 668 (805)
|...|++++|.+
T Consensus 86 ~~~~g~~~~A~~ 97 (129)
T 2xev_A 86 QYGEGKNTEAQQ 97 (129)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHcCCHHHHHH
Confidence 999999999987
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.86 E-value=9.6e-05 Score=66.74 Aligned_cols=128 Identities=11% Similarity=-0.000 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhcCCC-----C----HhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCC-CC----H
Q 039715 480 VVANALIDMYAKCGSITDARLVFDMMNDW-----N----EVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWR-PN----N 545 (805)
Q Consensus 480 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~ 545 (805)
.++..+...|...|++++|...|++..+. + ..++..+...|...|++++|+..+++..+..-. ++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666777778888888888887766521 1 246777888888889999998888887652111 11 3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 546 LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP----CIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 546 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
..+..+...+...|++++|..++++..+...-.. ....+..+...|...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3566677778889999999998888764321111 1356778888899999999999888753
No 192
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.85 E-value=4.5e-05 Score=66.11 Aligned_cols=108 Identities=9% Similarity=0.032 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 039715 480 VVANALIDMYAKCGSITDARLVFDMMN---DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW--RPN----NLTFVG 550 (805)
Q Consensus 480 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~t~~~ 550 (805)
..+..+...|...|++++|...|++.. ..+...|..+...|...|++++|+..|++..+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 456667777778888888888887765 23667778888888888888888888888776421 112 456677
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 039715 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSL 590 (805)
Q Consensus 551 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 590 (805)
+..++...|++++|...|+.+.+. .|+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 777778888888888888877743 3555555444443
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=3.6e-05 Score=83.48 Aligned_cols=86 Identities=13% Similarity=0.033 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCc---chHHHHHHHHHhcCChHHHhh---cCCCCceEEECCeEE
Q 039715 615 IWRALLGACIIHNNVEIGRLSAQHILD-----FEPEDE---ATHVLLSNIYAMARSWEKAAS---KEPGLSWIENQGMVH 683 (805)
Q Consensus 615 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~~a~~---~~~~~s~~~~~~~~~ 683 (805)
+++.|+.+|..+|++++|+.+++++++ +.|+++ ..+..||.+|..+|++++|.. +.... .
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i-----~---- 423 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI-----L---- 423 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----H----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----H----
Confidence 445555555555555555555555544 233332 234445555555555555554 00000 0
Q ss_pred EEeeCCCCCccHHHHHHHHHHHHHHHH
Q 039715 684 YFRAGDTSHADMNIIRGMLEWLNMKSR 710 (805)
Q Consensus 684 ~f~~~~~~~~~~~~i~~~l~~l~~~~~ 710 (805)
-..-...||.+.++..+|.....+++
T Consensus 424 -~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 424 -LVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp -HHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 00012568888888887777765554
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=0.00012 Score=79.41 Aligned_cols=114 Identities=9% Similarity=0.042 Sum_probs=82.8
Q ss_pred HHcCCCHHHHHHHHHHHHHhcCC--CC----ChHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCCH-HHHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYGI--EP----CIEHYTSMVSLLGRAGHLDKAAKLIEGI---------PFQPSV-MIWRA 618 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~--~p----~~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~~-~~~~~ 618 (805)
+..+|++++|+.++++.++...- -| ...+++.|+.+|..+|++++|+.++++. +.+|++ .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777666543211 11 1356777777788888888887777654 345665 47899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc-----cCCCCcchH---HHHHHHHHhcCChHHHhh
Q 039715 619 LLGACIIHNNVEIGRLSAQHILD-----FEPEDEATH---VLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~a~~ 668 (805)
|+..|..+|++++|+.+++++++ +.|+++.+- ..|+..+..+|++++|..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 578776654 467778888888888854
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.78 E-value=5.6e-05 Score=82.18 Aligned_cols=56 Identities=9% Similarity=0.064 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++|..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~ 372 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999988
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.70 E-value=5.5e-05 Score=78.57 Aligned_cols=105 Identities=10% Similarity=-0.067 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 039715 547 TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIH 626 (805)
Q Consensus 547 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~ 626 (805)
.+..+...+...|++++|...|++.... .|+.. .+...|+.+++...+. ...|..+..+|...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 4556667788899999999999988743 45432 2334455566554442 13788999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 627 NNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 627 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
|++++|+..++++++++|+++.+|..++.+|...|++++|.+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~ 285 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARD 285 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999998
No 197
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.70 E-value=6.6e-05 Score=80.24 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=17.4
Q ss_pred CCCccHHHHHHHHHHHHHHHH
Q 039715 690 TSHADMNIIRGMLEWLNMKSR 710 (805)
Q Consensus 690 ~~~~~~~~i~~~l~~l~~~~~ 710 (805)
..||.+.+++..|+....+|+
T Consensus 407 ~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 407 REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHh
Confidence 579999999998888877765
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.65 E-value=0.00012 Score=60.42 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 612 SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 612 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...|..++..|...|++++|+..++++++++|+++.+|..+|.+|...|++++|.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 62 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999877
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.65 E-value=3e-05 Score=68.89 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=37.3
Q ss_pred HHHHHHHHcC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 598 DKAAKLIEGI-PFQP-SVMIWRALLGACIIH-----------NNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 598 ~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
++|+..|++. .+.| +...|..++.+|... |++++|+..|+++++++|++......+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3555555543 2334 344566666666655 589999999999999999886554443
No 200
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.58 E-value=5.7e-05 Score=80.54 Aligned_cols=85 Identities=11% Similarity=0.032 Sum_probs=45.2
Q ss_pred cCCCHHHHHHHHHHHHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCCH-HHHHHHH
Q 039715 557 NGGLLEQGEAYFKSMVANYG--IEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI---------PFQPSV-MIWRALL 620 (805)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~~-~~~~~l~ 620 (805)
+.|++++|+.++++.++... +-|+ ..+++.|..+|..+|++++|+.+++++ +.+|++ .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45666777776666554321 1111 244555556666666666666555543 233443 2455555
Q ss_pred HHHHHcCCHHHHHHHHHHHhc
Q 039715 621 GACIIHNNVEIGRLSAQHILD 641 (805)
Q Consensus 621 ~~~~~~g~~~~a~~~~~~~~~ 641 (805)
..|..+|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 555556666666655555554
No 201
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.57 E-value=0.00031 Score=73.74 Aligned_cols=116 Identities=6% Similarity=-0.120 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCC-------------------CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMND-------------------WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGW 541 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 541 (805)
.+..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.+++.++ +
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--I 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--h
Confidence 345566667777777777777765543 1344566666666666666666666666666 3
Q ss_pred CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHH
Q 039715 542 RPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAA 601 (805)
Q Consensus 542 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~ 601 (805)
.|+ ...+..+..++...|++++|+..|+++.+. .| +...+..+..++.+.++.+++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 443 345555566666666666666666665532 33 3444445555555555555443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.00015 Score=60.79 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=69.6
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCC-------
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPC------- 580 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------- 580 (805)
+...|..+...+...|++++|++.|++.++. .| +...+..+..++...|++++|+..+++.. .+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHH
Confidence 3456777788888888888888888888874 45 45577777778888888888888888877 45565
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGIP 608 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~~ 608 (805)
...+..+...+...|+.++|.+.++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4556666677777777777766666654
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.46 E-value=0.00017 Score=61.18 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 612 SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 612 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+...|..++..+...|++++|+..++++++++|+++..+..++.+|...|++++|..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 345666666666666666666666666666666666666666666666666666655
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.45 E-value=6.1e-05 Score=66.86 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 593 RAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNN----------VEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 593 ~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
|.+++++|.+.+++. ...| ++..|..++.++...|+ +++|+..++++++++|++..+|..||++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445556666665544 2233 45566666666665554 57999999999999999999999999999988
Q ss_pred C-----------ChHHHhh
Q 039715 661 R-----------SWEKAAS 668 (805)
Q Consensus 661 g-----------~~~~a~~ 668 (805)
| ++++|.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~ 112 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQ 112 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHH
Confidence 5 7888876
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.42 E-value=0.0012 Score=57.94 Aligned_cols=112 Identities=6% Similarity=-0.162 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHh----cCCHHH
Q 039715 524 GLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGR----AGHLDK 599 (805)
Q Consensus 524 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~e 599 (805)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999877 44443 556677778888999999988754 467788888888888 889999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 039715 600 AAKLIEGIPFQPSVMIWRALLGACII----HNNVEIGRLSAQHILDFEP 644 (805)
Q Consensus 600 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 644 (805)
|.++|++.....++..+..|...|.. .+|.++|+..++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999977434677888888888888 8899999999999988753
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.40 E-value=0.00067 Score=72.26 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=67.4
Q ss_pred hCCChHHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----CC-CCC-hHHHHHHH
Q 039715 522 MHGLSAEVLKVFDLMQQR---GWRPNN----LTFVGVLSACSNGGLLEQGEAYFKSMVANY----GI-EPC-IEHYTSMV 588 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~-~p~-~~~~~~li 588 (805)
..|++++|+.++++.++. -+-|+. .+++.+..+|...|++++|..++++++..+ |- .|+ ...++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 578999999999988763 233442 478889999999999999999999887532 21 233 36789999
Q ss_pred HHHHhcCCHHHHHHHHHcC
Q 039715 589 SLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~~~ 607 (805)
.+|..+|++++|+.++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999998764
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.37 E-value=0.00061 Score=57.60 Aligned_cols=98 Identities=10% Similarity=0.029 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 039715 564 GEAYFKSMVANYGIEP-CIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHIL 640 (805)
Q Consensus 564 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 640 (805)
++..|+... ...| +...+..++..|.+.|++++|+..+++. ...| +...|..++.++...|++++|+..+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555554 2334 4556666677777777777777776654 2223 45678888888888888888888888888
Q ss_pred ccCCCC--cchHHHHHHHHHhcCChH
Q 039715 641 DFEPED--EATHVLLSNIYAMARSWE 664 (805)
Q Consensus 641 ~~~p~~--~~~~~~l~~~~~~~g~~~ 664 (805)
++.|++ ......+...+...|+..
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~ 106 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRLARED 106 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHhcccc
Confidence 887743 333444555555544433
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.28 E-value=0.0014 Score=69.87 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=64.3
Q ss_pred HHcCCCHHHHHHHHHHHHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHcC---------CCCCCH-HHHHH
Q 039715 555 CSNGGLLEQGEAYFKSMVANYG--IEPC----IEHYTSMVSLLGRAGHLDKAAKLIEGI---------PFQPSV-MIWRA 618 (805)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~eA~~~~~~~---------~~~p~~-~~~~~ 618 (805)
+...|++++|+.++++..+... +.|+ ..+++.|+.+|...|++++|+.+++++ +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3345566666666655553211 1111 245666666666666666666666543 345654 46889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhc-----cCCCCcchHHHH
Q 039715 619 LLGACIIHNNVEIGRLSAQHILD-----FEPEDEATHVLL 653 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~l 653 (805)
|...|..+|++++|+..++++++ +.|+++.+-..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 99999999999999999999887 578887665543
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.27 E-value=0.0021 Score=71.39 Aligned_cols=133 Identities=9% Similarity=0.031 Sum_probs=110.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCC----------HHHHHHHHHHHHHhcCCCC-ChHHHHHHHHH
Q 039715 523 HGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGL----------LEQGEAYFKSMVANYGIEP-CIEHYTSMVSL 590 (805)
Q Consensus 523 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 590 (805)
....++|++.++++++ +.|+.. .|+.--.++.+.|+ +++++..++.+.+. .| +...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3445788999999999 678765 45555555556666 89999999999864 45 56788888888
Q ss_pred HHhcC--CHHHHHHHHHcC-CCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 039715 591 LGRAG--HLDKAAKLIEGI-PFQ-PSVMIWRALLGACIIHN-NVEIGRLSAQHILDFEPEDEATHVLLSNIYAMA 660 (805)
Q Consensus 591 ~~~~g--~~~eA~~~~~~~-~~~-p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 660 (805)
+.+.| ++++|+++++++ ... .|...|+.-..++...| ..+++++.++++++.+|++..+|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 99999 779999999987 223 47889999999999999 899999999999999999999999999998885
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.24 E-value=0.003 Score=64.40 Aligned_cols=143 Identities=10% Similarity=-0.026 Sum_probs=89.0
Q ss_pred CCHhHHHHHHHHHH--hCCC---hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH----cCC-CHHHH---HHHHHHHHH
Q 039715 508 WNEVSWNAMISGYS--MHGL---SAEVLKVFDLMQQRGWRPNNL-TFVGVLSACS----NGG-LLEQG---EAYFKSMVA 573 (805)
Q Consensus 508 ~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~----~~g-~~~~a---~~~~~~m~~ 573 (805)
.+...|...+.+.. ..+. ..+|+.+|++.++ +.|+.. .+..+..++. ..+ .-... .+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46677777766543 2333 4789999999998 578743 4443333332 111 11111 112221111
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 574 NYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI-PFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 574 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
.-....+..+|..+...+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|..+ +|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYW 348 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHH
Confidence 1112336677777777777778888888888876 3457777777778888888899999988888988888654 4443
Q ss_pred H
Q 039715 653 L 653 (805)
Q Consensus 653 l 653 (805)
.
T Consensus 349 ~ 349 (372)
T 3ly7_A 349 I 349 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.07 E-value=0.0065 Score=53.23 Aligned_cols=109 Identities=13% Similarity=0.024 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHH
Q 039715 424 EVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK----CGSITDAR 499 (805)
Q Consensus 424 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~ 499 (805)
++++|++.|++..+.| .|+.. +...+...+.+++|.+.+....+.| +......|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22222 4444444455555666666555554 34455555555555 45555555
Q ss_pred HHhhhcCC-CCHhHHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 039715 500 LVFDMMND-WNEVSWNAMISGYSM----HGLSAEVLKVFDLMQQRG 540 (805)
Q Consensus 500 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 540 (805)
+.|++..+ .+..++..|...|.. .++.++|+..|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55554432 244455555555554 455555555555555443
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.06 E-value=0.003 Score=50.77 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 611 PSVMIWRALLGACIIHNN---VEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 611 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|+..|..+..++...++ .++|...++++++++|+++.+...+|+++...|++++|..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~ 64 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAID 64 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 466777777777765554 6888888888888888888888888888888888888887
No 213
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.05 E-value=0.00052 Score=54.86 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 613 VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 613 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
...|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 64 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999987
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.03 E-value=0.0024 Score=51.95 Aligned_cols=73 Identities=14% Similarity=0.200 Sum_probs=54.2
Q ss_pred HHHHHHhcCCHHHHHHHHHcC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchH--HHHHHHHHh
Q 039715 587 MVSLLGRAGHLDKAAKLIEGI-PFQP-SVM-IWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATH--VLLSNIYAM 659 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~~~~ 659 (805)
.+..+.+.|++++|.+.++++ ...| +.. .|..++.++...|++++|+..++++++++|+++..+ ..+..++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~ 83 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILNF 83 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 455667778888888887765 2234 456 788888888889999999999999999999888877 444444443
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.92 E-value=0.0041 Score=50.88 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=39.7
Q ss_pred CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 509 NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 509 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
+...|..+...|...|++++|+..|++.++. .| +...+..+..++...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666666677777777666663 34 344566666666666777777666666553
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.64 E-value=0.0005 Score=71.13 Aligned_cols=418 Identities=11% Similarity=0.060 Sum_probs=247.4
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHH
Q 039715 123 ISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAF 202 (805)
Q Consensus 123 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 202 (805)
..|..|..+....|...+|++.|-+. -|+..|..++.++.+.|.+++-...+....+.. .++.+=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 35777777777777777776554221 355677777888888888777777766665553 4556667899999
Q ss_pred HhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHH
Q 039715 203 SVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVA 282 (805)
Q Consensus 203 ~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 282 (805)
++.+++.+-+..+. .||..-...+..-|...|.++.|+-+|..+- -|..
T Consensus 127 Ak~~rL~elEefl~----------------------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~ak 175 (624)
T 3lvg_A 127 AKTNRLAELEEFIN----------------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGR 175 (624)
T ss_dssp HTSCSSSTTTSTTS----------------------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTT
T ss_pred HhhCcHHHHHHHHc----------------------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHH
Confidence 99988775333332 4666666777777777777776666554321 1223
Q ss_pred HHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHH
Q 039715 283 LLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLG 362 (805)
Q Consensus 283 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 362 (805)
|...+.+.|++..|...-++ ..++.+|-.+-.+|+..+.+.-|.-.--.+. +.|| -+..++..|...|.+++-
T Consensus 176 LAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~EL 248 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEEL 248 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHH
Confidence 34445556666666544332 2478899999999999999887655443333 1222 233455667888888888
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCC----C-------ChhhHHHHHHHHHHcCChHHHHHH
Q 039715 363 NQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPK----R-------NHVTWNTMIVGYVQLGEVGKAMIM 431 (805)
Q Consensus 363 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~~ 431 (805)
..+++.-+... .....+++-|.-.|+|- ++++-.+.++.... | ....|.-++-.|.+..+++.|...
T Consensus 249 IsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 249 ITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp TTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 88887766321 35677888888888886 45555555443222 1 455799999999998888877532
Q ss_pred -------------HHHHhhcCCCCChhh---------------HHHHHHHHhccCCchhHHHHHHHHHH----------c
Q 039715 432 -------------FSKMLEEQVPATEVT---------------YSSVLRACASLAALEPGMQVHCLTVK----------A 473 (805)
Q Consensus 432 -------------~~~m~~~g~~p~~~t---------------~~~ll~a~~~~~~~~~a~~~~~~~~~----------~ 473 (805)
|.+.... .+|... ++-||.++...=+...+.+++...-. -
T Consensus 327 Mi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~V 404 (624)
T 3lvg_A 327 MMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSV 404 (624)
T ss_dssp TTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSC
T ss_pred HHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHH
Confidence 1111110 122222 23445554444444444444432110 0
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC------------CCHhHHHHH-HHHHHhCCChHHHHHHHHHHHHcC
Q 039715 474 NYDMDVVVANALIDMYAKCGSITDARLVFDMMND------------WNEVSWNAM-ISGYSMHGLSAEVLKVFDLMQQRG 540 (805)
Q Consensus 474 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g 540 (805)
.-..+..+-.++-+.|....+++.-+.-.+.-.. .+..-+..+ ...|.+++++++++++.++ .+
T Consensus 405 q~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk 481 (624)
T 3lvg_A 405 QNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DS 481 (624)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TC
T ss_pred HHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---cc
Confidence 1123456677888888888887765554433221 122223222 3456778888888765432 11
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 039715 541 WRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKL 603 (805)
Q Consensus 541 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~ 603 (805)
+ |.-.+...+.+|+.+-+.++++-..+. -+.+.+.+.+..+...=+.|-++++
T Consensus 482 l------ykDAietAa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 482 L------YKDAMQYASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp C------TTGGGTTTTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred c------HHHHHHHHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 1 122233445667777777777766654 2444555555555555566666665
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.61 E-value=0.0096 Score=49.07 Aligned_cols=74 Identities=14% Similarity=0.126 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGI-----P----FQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
..-+-.|+..+.+.|+++.|..+++.+ + -.+...++..|..++.+.|+++.|+..++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 344455666666666776666666543 0 1234568899999999999999999999999999999988766
Q ss_pred HHH
Q 039715 652 LLS 654 (805)
Q Consensus 652 ~l~ 654 (805)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.40 E-value=0.19 Score=58.65 Aligned_cols=128 Identities=14% Similarity=0.149 Sum_probs=79.5
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChH
Q 039715 347 VSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVG 426 (805)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 426 (805)
..++..+.+.|..+.|.++.+ +. ..-.....++|++++|.++.+.+. +...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 455555566666666655432 11 111344567899999999887764 5578999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhh
Q 039715 427 KAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 427 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
.|.+.|.++.. |..+...+...++.+....+-......|. ++.-..+|.+.|++++|.+++.
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998754 33444444445655555554444444331 2233344555666666666543
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.35 E-value=0.085 Score=61.69 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 039715 489 YAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYF 568 (805)
Q Consensus 489 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 568 (805)
...+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 445677777777665553 456677777777777777777777776543 223333334455555544443
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 569 KSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 569 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
+..... | .++.-...|.+.|++++|++++.++
T Consensus 731 ~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 333221 1 1222334455566666666665444
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.24 E-value=0.006 Score=49.54 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=46.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCChHHHhh
Q 039715 619 LLGACIIHNNVEIGRLSAQHILDFEPEDEA-THVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 619 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~ 668 (805)
.+..+...|++++|+..++++++.+|+++. .+..+|.+|...|++++|.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~ 56 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN 56 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHH
Confidence 456678899999999999999999999999 99999999999999999988
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.23 E-value=0.027 Score=58.59 Aligned_cols=174 Identities=13% Similarity=0.085 Sum_probs=114.2
Q ss_pred hHHHHHhhchHHhhhhhccCCCCCCCCcccccCCCChhhHHHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 039715 20 KINAWLRGLSAQAALSTQQCSNSTTTPITFSVSEFNSHSYATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFATNVLLN 99 (805)
Q Consensus 20 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 99 (805)
.+.+.+..+....|+.++ .-.-|+..|..++.++.+.|.+++....+....+.. .++.+-+.|+-
T Consensus 60 LgkAqL~~~~v~eAIdsy-------------IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 60 LAKAQLQKGMVKEAIDSY-------------IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp HHHHTTTSSSCTTTTTSS-------------CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred HHHHHHccCchHHHHHHH-------------HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 445555555555555544 114466778999999999999999998877665553 45667788999
Q ss_pred HHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCC--------------------CCCCcch
Q 039715 100 VYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREG--------------------HELNPFA 159 (805)
Q Consensus 100 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~t 159 (805)
+|+|.+++.+-.+++ ..||+.--..+..-|...|.++.|.-+|..+.... -.-++.|
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 999999976644322 23676666777777777777777776666543211 1235668
Q ss_pred HHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCHHHHHHHHh
Q 039715 160 FTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCVEFARKVFD 216 (805)
Q Consensus 160 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 216 (805)
|-.+-.+|...+.+..|...--.++-. +| -...|+..|-+.|.+++-..+++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlE 253 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLE 253 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888888888776554333321 11 22345666777777766555554
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.94 E-value=0.028 Score=49.18 Aligned_cols=77 Identities=16% Similarity=0.033 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHcC-CCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 579 PCIEHYTSMVSLLGRAG---HLDKAAKLIEGI-PFQ-P--SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 579 p~~~~~~~li~~~~~~g---~~~eA~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
++..+...+..+|.+.. ++++++.++++. ... | +...+-.|.-+|.+.|++++|++.++++++++|++..+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34444444445555544 333555444433 111 3 2345666777889999999999999999999999987766
Q ss_pred HHHH
Q 039715 652 LLSN 655 (805)
Q Consensus 652 ~l~~ 655 (805)
..--
T Consensus 110 Lk~~ 113 (152)
T 1pc2_A 110 LERL 113 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.82 E-value=0.11 Score=52.85 Aligned_cols=73 Identities=8% Similarity=0.087 Sum_probs=52.2
Q ss_pred CCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHH
Q 039715 507 DWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHY 584 (805)
Q Consensus 507 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 584 (805)
..+...|.++...+...|++++|+..+++++.. .|+...|..+...+.-.|+.++|.+.|++.. .+.|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChH
Confidence 346667777776666678888888888888874 4776667666677777888888888887776 346666554
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.71 E-value=0.08 Score=42.29 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHHhcCC---HHHHHHHHHcC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCc
Q 039715 579 PCIEHYTSMVSLLGRAGH---LDKAAKLIEGI-PFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDE 647 (805)
Q Consensus 579 p~~~~~~~li~~~~~~g~---~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 647 (805)
+++..+..+..++...+. .++|..++++. ...| ++..+..++..+...|++++|+..++++++.+|+++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 466777777777765444 68888888765 3345 466788888889999999999999999999999843
No 225
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.18 E-value=6.1 Score=45.50 Aligned_cols=168 Identities=10% Similarity=0.032 Sum_probs=78.4
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHH--HHHHHHHhcCCH
Q 039715 418 GYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVAN--ALIDMYAKCGSI 495 (805)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~y~~~g~~ 495 (805)
.|+..|+.+-...++..+.+.. .-+...+..+.-++...|+.+.+..+.+.+.... .|...... ++.-+|+..|+.
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCH
T ss_pred hhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCH
Confidence 3445566555555665554421 1111122223333446677777777766665532 22222222 334456667776
Q ss_pred HHHHHHhhhcCC---CCHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHH
Q 039715 496 TDARLVFDMMND---WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLL-EQGEAYFKSM 571 (805)
Q Consensus 496 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m 571 (805)
....+++..+.+ .++...-.+.-|+...|+.+.+..+++.+.+.+ .|....-..+.-+....|.. .++...+..+
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 666666665542 133333333345555666665666665555432 33322222222222223322 4566666666
Q ss_pred HHhcCCCCChHHHHHHHHHHH
Q 039715 572 VANYGIEPCIEHYTSMVSLLG 592 (805)
Q Consensus 572 ~~~~~~~p~~~~~~~li~~~~ 592 (805)
.. +++..+-..-+.+++
T Consensus 656 ~~----D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 656 TK----DPVDFVRQAAMIALS 672 (963)
T ss_dssp HT----CSSHHHHHHHHHHHH
T ss_pred cc----CCCHHHHHHHHHHHH
Confidence 52 355544433333333
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.83 E-value=1.1 Score=40.15 Aligned_cols=101 Identities=8% Similarity=0.133 Sum_probs=58.3
Q ss_pred HHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHH
Q 039715 388 YAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVH 467 (805)
Q Consensus 388 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 467 (805)
..++|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45677777777776655 3556788888777778888877777777643 233333444455555444444
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhc
Q 039715 468 CLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMM 505 (805)
Q Consensus 468 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 505 (805)
......| -++.-...+.-.|+++++.++|.+.
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4443333 1223333344556666666666544
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.59 E-value=0.028 Score=49.22 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CCcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEE
Q 039715 610 QPSVMIWRALLGACIIHN---NVEIGRLSAQHILDFE-P-EDEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHY 684 (805)
Q Consensus 610 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~ 684 (805)
.++..+.-.+.+++.+.+ +.++|+.+++.+++.+ | ++...+..|+-.|.+.|++++|.+ .
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~---------------y 93 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK---------------Y 93 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH---------------H
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH---------------H
Confidence 367888889999999887 6779999999999998 7 568899999999999999999998 0
Q ss_pred EeeCCCCCccHHHHHHHHHHHHHHHHHcCccc
Q 039715 685 FRAGDTSHADMNIIRGMLEWLNMKSRKAGYIP 716 (805)
Q Consensus 685 f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~ 716 (805)
|-..-...|...........+.+++.+.|.+-
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 00000122444444444455566777777653
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.58 E-value=1 Score=40.33 Aligned_cols=128 Identities=11% Similarity=0.077 Sum_probs=82.1
Q ss_pred HHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHH
Q 039715 286 LYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQI 365 (805)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 365 (805)
....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345678888888877765 3455688888888888888888888877643 34444455556776666666
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 039715 366 HSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKM 435 (805)
Q Consensus 366 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 435 (805)
-+.....| -++.....+...|+++++.++|.+...-... +......|..+.|.++..++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 55555554 2344455566778888888888765542211 11122256667777777665
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.14 E-value=0.13 Score=58.10 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=45.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 620 LGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 620 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
..-|...|+++.|+.+++++...-|++-.+|..|+.+|...|+|+.|.-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 3457789999999999999999999999999999999999999999987
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.91 E-value=0.087 Score=51.38 Aligned_cols=55 Identities=9% Similarity=0.218 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCC-cchHHHHHHHHHhc-CChHHHhh
Q 039715 614 MIWRALLGACII-----HNNVEIGRLSAQHILDFEPED-EATHVLLSNIYAMA-RSWEKAAS 668 (805)
Q Consensus 614 ~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a~~ 668 (805)
..|..|+..|.. -|+.++|.+.|+++++++|+. ..+++..++.|... |+.++|.+
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~ 261 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDE 261 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH
Confidence 345555555555 367777777777777777753 67777777766663 66666655
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.56 E-value=0.56 Score=39.33 Aligned_cols=77 Identities=14% Similarity=-0.038 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHhcCCHHH---HHHHHHcCC-CC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHH
Q 039715 579 PCIEHYTSMVSLLGRAGHLDK---AAKLIEGIP-FQ-P--SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHV 651 (805)
Q Consensus 579 p~~~~~~~li~~~~~~g~~~e---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 651 (805)
|+..+--.+..+|.+..+..+ ++.+++++- .. | .....-.|.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555555556666666655544 566665542 11 2 1123455666788999999999999999999999987766
Q ss_pred HHHH
Q 039715 652 LLSN 655 (805)
Q Consensus 652 ~l~~ 655 (805)
+..-
T Consensus 113 Lk~~ 116 (126)
T 1nzn_A 113 LERL 116 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.45 E-value=2.6 Score=35.50 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHhcCChHHHhh
Q 039715 594 AGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 594 ~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
+|++....+-+-.+. .+....+--+.....+|+.++-.+++..++.-+|-+++..+-++++|.+.|...+|.+
T Consensus 74 C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 74 CQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp CSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHH
Confidence 445554444444443 2333334445556666666666666666555555566666666666666666666543
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.37 E-value=0.57 Score=45.74 Aligned_cols=110 Identities=8% Similarity=0.042 Sum_probs=68.2
Q ss_pred CCHHHHHHHhhhcCCCC--HhHHHHHHH-HHHhC--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC
Q 039715 493 GSITDARLVFDMMNDWN--EVSWNAMIS-GYSMH--GL------SAEVLKVFDLMQQRGWRPN---NLTFVGVLSACSNG 558 (805)
Q Consensus 493 g~~~~A~~~~~~~~~~~--~~~~~~li~-~~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~ 558 (805)
|+..+-.+.+.+....+ ...|..++. +++.. |. ..+|..++++.++ +.|+ ...|..+...|...
T Consensus 135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhC
Confidence 44444444455554333 345666654 33332 22 4567777777777 5676 44677777777773
Q ss_pred -----CCHHHHHHHHHHHHHhcCCCC--ChHHHHHHHHHHHhc-CCHHHHHHHHHcC
Q 039715 559 -----GLLEQGEAYFKSMVANYGIEP--CIEHYTSMVSLLGRA-GHLDKAAKLIEGI 607 (805)
Q Consensus 559 -----g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~-g~~~eA~~~~~~~ 607 (805)
|+.++|.++|++.++ +.| +..++..+.+.|++. |+.++|.+.+++.
T Consensus 213 Pp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 788888888888773 456 366777777777774 7777777777754
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.65 E-value=0.78 Score=37.25 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQ 538 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 538 (805)
.+..+..+|.+.|++++|+..+++..+
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344444455555555555555555544
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.66 E-value=23 Score=39.03 Aligned_cols=259 Identities=7% Similarity=0.048 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccC
Q 039715 379 FVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLA 458 (805)
Q Consensus 379 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 458 (805)
..-+.-+..+.+.+++.....+|.. +..+...-.....+....|+..+|.....++-..| .........++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3444556667778888888887776 44455555566777788888888888888877665 233445566666666555
Q ss_pred CchhHH--HHHHHHHHcC-----------CCCcH-hHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHh---HHHHHHHHHH
Q 039715 459 ALEPGM--QVHCLTVKAN-----------YDMDV-VVANALIDMYAKCGSITDARLVFDMMNDWNEV---SWNAMISGYS 521 (805)
Q Consensus 459 ~~~~a~--~~~~~~~~~~-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~ 521 (805)
.+.... +=...+...| ++++. .....++..+.+-..+ ....... .++.. ....-+.-++
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHH
Confidence 543322 1112222221 11111 1122233222222222 1111111 11111 1111122233
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCH
Q 039715 522 MHGLSAEVLKVFDLMQQRGWRPNNLTFVG----VLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHL 597 (805)
Q Consensus 522 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 597 (805)
+ .+.+.|..+|......+ ..+...... +.......+...++...+...... .++.....-.+....+.|++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDR 301 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCH
Confidence 3 37899999999887643 233332222 222233445355666666665432 23443344444455578999
Q ss_pred HHHHHHHHcCCCCC-C-H--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 039715 598 DKAAKLIEGIPFQP-S-V--MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLS 654 (805)
Q Consensus 598 ~eA~~~~~~~~~~p-~-~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 654 (805)
+.|...|+.|+..+ + . .-|. ..+....|+.++|...++++.+ + ...|-.|+
T Consensus 302 ~~a~~~~~~l~~~~~~~~r~~YW~--~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 302 RGLNTWLARLPMEAKEKDEWRYWQ--ADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHHHHSCTTGGGSHHHHHHH--HHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHHHHccccccccHhHHHHH--HHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 99999999997432 2 2 2343 3356678999999999999985 3 24565553
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.63 E-value=7 Score=32.95 Aligned_cols=85 Identities=13% Similarity=0.056 Sum_probs=54.8
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHH
Q 039715 390 KCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCL 469 (805)
Q Consensus 390 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 469 (805)
.||++......|-.+.. +....+.-+..++.+|.-++-.+++.++.. +.+|+......+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34455554444444332 223345556777778888887778777544 3466677777777888888888888888887
Q ss_pred HHHcCCC
Q 039715 470 TVKANYD 476 (805)
Q Consensus 470 ~~~~~~~ 476 (805)
+.+.|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 7777753
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.22 E-value=15 Score=36.29 Aligned_cols=167 Identities=10% Similarity=0.055 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHH----HHHHhhcCCCCChhhHHHHHHHHhcc
Q 039715 382 NALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIM----FSKMLEEQVPATEVTYSSVLRACASL 457 (805)
Q Consensus 382 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~ 457 (805)
.++..=|.+.+++++|++++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3445557788888888887533 23345556776555543 44445567778877777777666553
Q ss_pred CCch-hHHHHHHHHHH----cC--CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhC---CChH
Q 039715 458 AALE-PGMQVHCLTVK----AN--YDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMH---GLSA 527 (805)
Q Consensus 458 ~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~ 527 (805)
..-+ .=.++...+++ .| ..-++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3222 12233344432 32 2247788999999999999999999988633322455555554433333 3333
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 039715 528 EVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVAN 574 (805)
Q Consensus 528 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 574 (805)
++- ...-..++ -|.-.|++..|...|+...++
T Consensus 186 e~d--------------lf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TVA--------------EFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH--------------HHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred hHH--------------HHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 221 11112222 244568999999998877654
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.73 E-value=2.3 Score=37.42 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 039715 581 IEHYTSMVSLLGRAGHLDKAAKLIEGIPF 609 (805)
Q Consensus 581 ~~~~~~li~~~~~~g~~~eA~~~~~~~~~ 609 (805)
.+.---+...|.+.|+.++|+.+++.+|.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 34434456677777777777777777763
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.20 E-value=43 Score=38.68 Aligned_cols=249 Identities=8% Similarity=-0.045 Sum_probs=130.3
Q ss_pred HHHhcCChHHHHHHHhcCCC----CCh--hhHHHHHHHHHHcCChHHHHHHHHHHhhcCC--C-----CChhhHHHHHHH
Q 039715 387 VYAKCGRMENSVELFAESPK----RNH--VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQV--P-----ATEVTYSSVLRA 453 (805)
Q Consensus 387 ~y~~~g~~~~A~~~f~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----p~~~t~~~ll~a 453 (805)
+....|+.++++.+++.... .+. ..-..+.-|....|..++++.++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567888899999987554 222 2233344556667776778888777665321 0 111111222222
Q ss_pred HhccCC-chhHHHHHHHHHHcCCC-CcHhHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CHhHHHHHHHHHHhCCChHH
Q 039715 454 CASLAA-LEPGMQVHCLTVKANYD-MDVVVANALIDMYAKCGSITDARLVFDMMND--W-NEVSWNAMISGYSMHGLSAE 528 (805)
Q Consensus 454 ~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 528 (805)
.+..|. -+++...+..++...-. ......-+|.-.|.-.|+-+....++..+.+ . ++.-.-++.-|+...|+.+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 222332 23444444444443211 0012233455556677887777777765432 2 23333444556668899999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHH---HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 039715 529 VLKVFDLMQQRGWRPNNL-TFV---GVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVSLLGRAGHLDKAAKLI 604 (805)
Q Consensus 529 A~~l~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~ 604 (805)
+..+.+.+... .|.. -|. .+.-+|+..|+.....++++.+..+ ...++.-...+.-++.-.|..+.+.+++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 98888888773 3333 333 3345678889988777788887753 2223332333333333466666666666
Q ss_pred HcCCCCCCHHHHHHHHHHHHH--cCC-HHHHHHHHHHHh
Q 039715 605 EGIPFQPSVMIWRALLGACII--HNN-VEIGRLSAQHIL 640 (805)
Q Consensus 605 ~~~~~~p~~~~~~~l~~~~~~--~g~-~~~a~~~~~~~~ 640 (805)
+.+....|+.+-.....++.. .|+ ..+++..+.++.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 644323344333222222222 222 245555666554
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.44 E-value=31 Score=36.30 Aligned_cols=96 Identities=10% Similarity=0.101 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCCC----h
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN-----LTFVGVLSACSNGGLLEQGEAYFKSMVAN-YGIEPC----I 581 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~----~ 581 (805)
....|...|...|++.+|..++.++...-...+. ..+...+..|...+++.+|..++.++... +...+. .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888899999999999988753222222 24566677788999999999999887532 122222 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 582 EHYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 582 ~~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
..|.+++..+...+++.+|-+.|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56788899999999999998877654
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.84 E-value=14 Score=31.92 Aligned_cols=97 Identities=8% Similarity=0.170 Sum_probs=55.3
Q ss_pred CCChhhHHHHHHHHHHcCCh------HHHHHHHHHHhhcCCCCChh----hHHHHHHH---HhccCCchhHHHHHHHHHH
Q 039715 406 KRNHVTWNTMIVGYVQLGEV------GKAMIMFSKMLEEQVPATEV----TYSSVLRA---CASLAALEPGMQVHCLTVK 472 (805)
Q Consensus 406 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~a---~~~~~~~~~a~~~~~~~~~ 472 (805)
..|..+|-..+...-+.|++ ++.+++|++.... ++|+.. .|..+.-- +...++++.|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45777888888888888888 7888888887764 556532 12111111 1223667777777776665
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhh
Q 039715 473 ANYDMDVVVANALIDMYAKCGSITDARLVFDM 504 (805)
Q Consensus 473 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 504 (805)
.. ..-..++......-.+.|++..|++++.+
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 42 22244444444444445555555544443
No 242
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.59 E-value=9.5 Score=30.01 Aligned_cols=87 Identities=11% Similarity=0.055 Sum_probs=62.5
Q ss_pred CCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHh
Q 039715 357 EGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKML 436 (805)
Q Consensus 357 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 436 (805)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||.+.|-++-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345677777777766553 333333344567789999999999999999999999888654 6788888888887887
Q ss_pred hcCCCCChhhHH
Q 039715 437 EEQVPATEVTYS 448 (805)
Q Consensus 437 ~~g~~p~~~t~~ 448 (805)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 765 44444443
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.54 E-value=28 Score=34.75 Aligned_cols=125 Identities=13% Similarity=0.026 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhh-----ccccHHHHHHHH----HHHHHCCCCCChhhHHHHHHHhhCCCCHH-----HHH
Q 039715 197 ALIDAFSVCGCVEFARKVFDGL-----FNDCFEEALNFF----SQMRAVGFKPNNFTFAFVLKACLGLDTIR-----VAK 262 (805)
Q Consensus 197 ~li~~y~~~g~~~~A~~~~~~~-----~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-----~a~ 262 (805)
++..=|.+.+++++|..++-.- +.|....|-++- +-+.+.++++|..+...++..+.....-+ -..
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~ 119 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVK 119 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 4444566777777777765433 455554444444 45556788888888888877777655321 122
Q ss_pred HHHHHHHHhC--CCCcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhC
Q 039715 263 SAHGCALKTC--YEMDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQT 321 (805)
Q Consensus 263 ~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 321 (805)
+....-.+.| ..-|+.....+...|.+.+++.+|+.-|-.-....+..+..|+--+...
T Consensus 120 ~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 120 EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 2333333444 3446777788888899999999998888532222224454444444333
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.04 E-value=28 Score=34.39 Aligned_cols=132 Identities=8% Similarity=0.116 Sum_probs=80.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhHHHHHHHHHhc
Q 039715 280 AVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVEL----FCRMRQAFVAPNQFTFVSVLQACAT 355 (805)
Q Consensus 280 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~ 355 (805)
+.++..=|.+.+++++|..++..- ...+.+.|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 335566678888888888876542 3455666776665554 4445566788888888877777655
Q ss_pred cCCch-HHHHHHHHHH----HhCC--CccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 039715 356 MEGLD-LGNQIHSLVV----RVGL--LSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQL 422 (805)
Q Consensus 356 ~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 422 (805)
...-+ .=..+.+.++ +.|- .-|+.....+...|.+.|++.+|+..|-.-...|...+..|+.-+...
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 33211 1233333333 3331 236778888888999999999998887633323455555554444443
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.74 E-value=30 Score=34.46 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=95.7
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHH----HHHHhhcCCCCChhhHHHHHHHHhccC
Q 039715 383 ALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIM----FSKMLEEQVPATEVTYSSVLRACASLA 458 (805)
Q Consensus 383 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~~ 458 (805)
++..=|.+.+++++|++++-. -...+.+.|+...|-++ ++-..+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 444557888888888887533 23345556666554443 344455677788777777777666554
Q ss_pred CchhH-HHHHHHHH----HcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHH
Q 039715 459 ALEPG-MQVHCLTV----KAN--YDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLK 531 (805)
Q Consensus 459 ~~~~a-~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 531 (805)
.-+.. ..+...++ +.| ..-|+.....+...|.+.+++.+|+..|-.-....+..+..|+.-+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--- 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--- 185 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG---
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc---
Confidence 32211 22233333 233 334778888999999999999999998843222223455444443333322111
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 039715 532 VFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 532 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 573 (805)
+|...-..++ -|...+++..|...++...+
T Consensus 186 -----------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -----------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34556889999888777664
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.37 E-value=9 Score=30.10 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=62.7
Q ss_pred CCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHh
Q 039715 357 EGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKML 436 (805)
Q Consensus 357 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 436 (805)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||.++|-++-.. +.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345677777777766553 333333344567789999999999999999999999888654 6788888888888887
Q ss_pred hcCCCCChhhHH
Q 039715 437 EEQVPATEVTYS 448 (805)
Q Consensus 437 ~~g~~p~~~t~~ 448 (805)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 44444443
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.85 E-value=14 Score=31.49 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHhcCCHH---HHHHHHHcC-CCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHH
Q 039715 579 PCIEHYTSMVSLLGRAGHLD---KAAKLIEGI-PFQP-SV-MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVL 652 (805)
Q Consensus 579 p~~~~~~~li~~~~~~g~~~---eA~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 652 (805)
|+..+--.+..++.+..+.+ +++.+++.+ ...| +. ...--|.-++.+.|++++|.+..+.+++.+|+|..+..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 44444444455555544332 344444433 1122 22 234455667889999999999999999999998776554
Q ss_pred HH
Q 039715 653 LS 654 (805)
Q Consensus 653 l~ 654 (805)
..
T Consensus 117 k~ 118 (144)
T 1y8m_A 117 KS 118 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 248
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=84.79 E-value=7.3 Score=33.59 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=61.1
Q ss_pred CCCHhHHHHHHHHHHhCCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHHH---HHcCCCHHHHHHHHHHHHH
Q 039715 507 DWNEVSWNAMISGYSMHGLS------AEVLKVFDLMQQRGWRPNNL----TFVGVLSA---CSNGGLLEQGEAYFKSMVA 573 (805)
Q Consensus 507 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~a---~~~~g~~~~a~~~~~~m~~ 573 (805)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.-- +...+++++|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44777777777777777777 7777777777664 555421 11111100 1111344444444444332
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 039715 574 NYGIEPCIEHYTSMVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHILDFEPED 646 (805)
Q Consensus 574 ~~~~~p~~~~~~~li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 646 (805)
. .+.-+.+|-....--.++|++..|.+++.+++++.|..
T Consensus 89 ~----------------------------------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 N----------------------------------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp H----------------------------------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred H----------------------------------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 1 01125667766666677888888888888888888754
No 249
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.21 E-value=9.1 Score=30.05 Aligned_cols=86 Identities=15% Similarity=0.048 Sum_probs=57.5
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQR 539 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 539 (805)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-++.. .+.|..+++..-+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555555554442 22222233445667899999999999999999999988754 4678888888888788777
Q ss_pred CCCCCHHHHHH
Q 039715 540 GWRPNNLTFVG 550 (805)
Q Consensus 540 g~~p~~~t~~~ 550 (805)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.76 E-value=9.7 Score=29.96 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 039715 460 LEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSMHGLSAEVLKVFDLMQQR 539 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 539 (805)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-++.. .+.|..+++..-+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555555554442 22222233345667899999999999999999999988754 3567777777777777766
Q ss_pred CCCCCHHHHH
Q 039715 540 GWRPNNLTFV 549 (805)
Q Consensus 540 g~~p~~~t~~ 549 (805)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 5 45444444
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.26 E-value=13 Score=31.76 Aligned_cols=92 Identities=8% Similarity=-0.055 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCChHHHhhcCCCCceEEECCeEEEE
Q 039715 610 QPSVMIWRALLGACIIHN---NVEIGRLSAQHILDFEPE-DEATHVLLSNIYAMARSWEKAASKEPGLSWIENQGMVHYF 685 (805)
Q Consensus 610 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~s~~~~~~~~~~f 685 (805)
.|+..+--.+.+++.+.. +..+++.+++.++...|+ .-.....|+-.+.+.|++++|.+-.. .+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d------------~l 103 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD------------TL 103 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH------------HH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH------------HH
Confidence 567777777777877766 456899999999998884 45677889999999999999998000 00
Q ss_pred eeCCCCCccHHHHHHHHHHHHHHHHHcCccc
Q 039715 686 RAGDTSHADMNIIRGMLEWLNMKSRKAGYIP 716 (805)
Q Consensus 686 ~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~ 716 (805)
+ ...|....+......+.++|.++|.+-
T Consensus 104 L---~~eP~n~QA~~Lk~~Ie~~i~kdGliG 131 (144)
T 1y8m_A 104 F---EHERNNKQVGALKSMVEDKIQKETLKG 131 (144)
T ss_dssp H---HTCCCCHHHHHHHHHHHHHHHHTTTTT
T ss_pred H---hcCCCcHHHHHHHHHHHHHHHHhchhh
Confidence 0 122434444444445567788887653
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.04 E-value=15 Score=30.82 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 039715 614 MIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLL 653 (805)
Q Consensus 614 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 653 (805)
..+--|.-++.+.|++++|.+..+.+++.+|+|..+..+.
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3455666778899999999999999999999987765544
No 253
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.43 E-value=18 Score=30.23 Aligned_cols=66 Identities=9% Similarity=-0.067 Sum_probs=32.1
Q ss_pred CcHhHHHHHHHHHHhcCCHHH---HHHHhhhcCCCC-H----hHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 039715 477 MDVVVANALIDMYAKCGSITD---ARLVFDMMNDWN-E----VSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPN 544 (805)
Q Consensus 477 ~~~~~~~~li~~y~~~g~~~~---A~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 544 (805)
++..+-..+..++.+.....+ ++.+++.+.+.+ + ...-.|.-++.+.|++++|.+.++.+++ +.|+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCC
Confidence 344444444444555444443 445554444322 1 1223344556666666666666666666 4554
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.35 E-value=49 Score=33.97 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=27.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 039715 551 VLSACSNGGLLEQGEAYFKSMVANYGIEPC----IEHYTSMVSLLGRAGHLDKAAKLIE 605 (805)
Q Consensus 551 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~eA~~~~~ 605 (805)
++..|...|++.+|..++..+.+...-..+ .+.|..-+.+|...|++.++...+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 444555556666665555555543211111 2344445555556666666555554
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.19 E-value=9.3 Score=39.59 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----hcCCCCChHHH
Q 039715 514 NAMISGYSMHGLSAEVLKVFDLMQQRGWRP-NNLTFVGVLSACSNGGLLEQGEAYFKSMVA----NYGIEPCIEHY 584 (805)
Q Consensus 514 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 584 (805)
..++..+...|++.+|+..+..+... .| +...+..++.++...|+..+|++.|+.+.+ ..|++|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44566677788888888888888773 44 666888888888888888888888877644 45888887653
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.36 E-value=28 Score=39.24 Aligned_cols=135 Identities=10% Similarity=-0.019 Sum_probs=76.4
Q ss_pred HHHHHHHhccCC-ccchhhHHHHHHHhCCCCchhhHHHHHHHHHhcCCH-HHHHHHHhhhccccHHHHHHHHHHHHHCCC
Q 039715 161 TAFLKVLVSMGW-AELCPCVFACVYKLGHDSNAFVGTALIDAFSVCGCV-EFARKVFDGLFNDCFEEALNFFSQMRAVGF 238 (805)
Q Consensus 161 ~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~ 238 (805)
..+++.+...+. .+.|..+++.+.+.....+.....+++....+.+.- -+|.++.. ++++-+..+...-.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~--------~~l~~~~~~~~~l~ 323 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILN--------ETLDPLLSLLNDLP 323 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHH--------HHHHHHHHHHHTCS
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHH--------HHHHHhhhhhhhhc
Confidence 455555555555 467888888888876433444444555544443321 12223322 22222222222211
Q ss_pred CCChh----------hHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHHHhhCC
Q 039715 239 KPNNF----------TFAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRIFEEMP 304 (805)
Q Consensus 239 ~p~~~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 304 (805)
.-+.. ....-.+-|...|+++.|.++-.+.+... +.+-.+|..|...|.+.|+++.|+-.++.+|
T Consensus 324 ~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 324 PRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11110 11111234556788888888888877763 4456788888888888888888888888886
No 257
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=79.13 E-value=40 Score=37.35 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=42.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHh---
Q 039715 415 MIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAK--- 491 (805)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--- 491 (805)
....+.-.|+++.|++.+.+. ...|.+.+...+..+.-++ ....++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---IDSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CCCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 455666789999999987755 2455555655555443333 211111110 01 11 2225667777765
Q ss_pred cCCHHHHHHHhhhcC
Q 039715 492 CGSITDARLVFDMMN 506 (805)
Q Consensus 492 ~g~~~~A~~~~~~~~ 506 (805)
..+..+|.+.|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 577888888776653
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.36 E-value=21 Score=34.18 Aligned_cols=119 Identities=11% Similarity=0.102 Sum_probs=74.1
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChH----HHHHHHHHHHh
Q 039715 519 GYSMHGLSAEVLKVFDLMQQRGWRPN-NLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIE----HYTSMVSLLGR 593 (805)
Q Consensus 519 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~ 593 (805)
.+.+.|+.++|++....-++. .|. ...=..++.-++-.|+++.|..-++...+ +.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 445678888888888877774 554 44445566777788899998888877763 456543 33333322
Q ss_pred cCCHHHHH-HHHH--cCC--CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 594 AGHLDKAA-KLIE--GIP--FQPSVMIWRALLGAC--IIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 594 ~g~~~eA~-~~~~--~~~--~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
+.++ ++|. +.| +.....-...|+.+. ...|+.++|...-.++++..|..++.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 1111 2343 222 111222234444553 45799999999999999999977664
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.30 E-value=15 Score=29.10 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 525 LSAEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 525 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
+.-+..+-++.+....+-|++....+.|.||.+.+++..|.++|+.++.+-+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3445666677777777899999999999999999999999999999887643 33556777654
No 260
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=73.82 E-value=1e+02 Score=34.10 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=17.1
Q ss_pred HHhcCCHHHHHHHHHcCCCCCC
Q 039715 591 LGRAGHLDKAAKLIEGIPFQPS 612 (805)
Q Consensus 591 ~~~~g~~~eA~~~~~~~~~~p~ 612 (805)
+...|++++|++.++++++-|.
T Consensus 548 ~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 3678899999999988866663
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.69 E-value=51 Score=39.63 Aligned_cols=166 Identities=8% Similarity=0.003 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCCCCChhhHHHHHHHHhccCCc
Q 039715 381 SNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQVPATEVTYSSVLRACASLAAL 460 (805)
Q Consensus 381 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 460 (805)
...++..+.+.|..+.|.++..-.+ .+..+-..+..+|...|++++|.+.|++.-. |+..+......+
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~---------- 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVL---------- 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSH----------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhh----------
Confidence 3456666777888888877655444 3444445667788899999999999987632 222221110000
Q ss_pred hhHHHHHHHHHHc-CC-CCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC----CCC----HhHHHHHHHHHHhCCChHHHH
Q 039715 461 EPGMQVHCLTVKA-NY-DMDVVVANALIDMYAKCGSITDARLVFDMMN----DWN----EVSWNAMISGYSMHGLSAEVL 530 (805)
Q Consensus 461 ~~a~~~~~~~~~~-~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~ 530 (805)
.. ...+... .. ..-..-|.-++..+.+.|.++.+.++-.... ..+ ...|..+..++...|++++|.
T Consensus 883 ---~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 ---RE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp ---HH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred ---cc-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 0111111 00 1122345566667777777766665543322 222 126888899999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 039715 531 KVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQG 564 (805)
Q Consensus 531 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 564 (805)
..+-.+.....+ ...+..++..++..|.+++-
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhh
Confidence 988887764433 34566666666666665543
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=72.74 E-value=11 Score=39.07 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CHhHHHHHHHHHHhCCChHHHHHHHHHHHH-----cCCCCCHHH
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMND--W-NEVSWNAMISGYSMHGLSAEVLKVFDLMQQ-----RGWRPNNLT 547 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 547 (805)
+...+++.+...|+.++|...+..+.. | +...|..+|.+|...|+..+|++.|++..+ .|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445678888999999999988877752 2 777999999999999999999999998754 588887654
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.63 E-value=63 Score=38.88 Aligned_cols=146 Identities=10% Similarity=0.046 Sum_probs=96.5
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcCCC------------------
Q 039715 447 YSSVLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMNDW------------------ 508 (805)
Q Consensus 447 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------------------ 508 (805)
...++..+...+..+.+.++.... +.+....-.+..+|..+|++++|.+.|.+....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 334566677777777776654332 334444456677899999999999999876421
Q ss_pred --------CHhHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--H--HHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Q 039715 509 --------NEVSWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN--L--TFVGVLSACSNGGLLEQGEAYFKSMVANYG 576 (805)
Q Consensus 509 --------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 576 (805)
-..-|.-++..|.++|.++.++++-+..++..-.-+. . .|..+..++...|++++|-..+-.+...
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-- 967 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-- 967 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--
Confidence 0123666788888999999999888877764322121 1 4677888888999999998877666422
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHH
Q 039715 577 IEPCIEHYTSMVSLLGRAGHLDKA 600 (805)
Q Consensus 577 ~~p~~~~~~~li~~~~~~g~~~eA 600 (805)
.-.......||..++..|.+++-
T Consensus 968 -~~r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 968 -PLKKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp -SSCHHHHHHHHHHHHHHCCHHHH
T ss_pred -HHHHHHHHHHHHHHHhCCChhhh
Confidence 22345666677666666555443
No 264
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.80 E-value=1e+02 Score=32.30 Aligned_cols=150 Identities=5% Similarity=0.030 Sum_probs=79.3
Q ss_pred cccHHHHHHHHHHHHHC-----CCCCChhhHHHHHHHhhCCCCHHHHHHHHHHHHHh-CCCCcHh--HHHHHHHHHHcCC
Q 039715 220 NDCFEEALNFFSQMRAV-----GFKPNNFTFAFVLKACLGLDTIRVAKSAHGCALKT-CYEMDLY--VAVALLDLYTKSG 291 (805)
Q Consensus 220 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~--~~~~li~~y~~~g 291 (805)
.|++++|++.+..+.+. ...........++..|...++++...+....+.+. |..+... ..+.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 45677777777666542 22334455777888999999998877766555443 3222211 1122223222222
Q ss_pred ChH--HHHHHHhhCCC---CCcc-------cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh-----hHHHHHHHHHh
Q 039715 292 EIS--NARRIFEEMPK---KDVI-------PWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQ-----FTFVSVLQACA 354 (805)
Q Consensus 292 ~~~--~A~~~f~~~~~---~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~ 354 (805)
..+ .-..+.+.... .-.. ....|...|...|++.+|..++..+...-...+. ..+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222 22333333221 1111 1345677888888888888888887643111111 23344445555
Q ss_pred ccCCchHHHHHHHHH
Q 039715 355 TMEGLDLGNQIHSLV 369 (805)
Q Consensus 355 ~~~~~~~a~~~~~~~ 369 (805)
..+++..|..+...+
T Consensus 189 ~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 189 LKGDYSQATVLSRKI 203 (445)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 666666666655554
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.61 E-value=38 Score=29.77 Aligned_cols=110 Identities=13% Similarity=0.030 Sum_probs=54.4
Q ss_pred HHHHHHhcCChHHHHHHHhcCC-----CCCh-------hhHHHHHHHHHHcCChHHHHHHHHHHhhcC-CCCChh-hHHH
Q 039715 384 LMDVYAKCGRMENSVELFAESP-----KRNH-------VTWNTMIVGYVQLGEVGKAMIMFSKMLEEQ-VPATEV-TYSS 449 (805)
Q Consensus 384 Li~~y~~~g~~~~A~~~f~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-t~~~ 449 (805)
-+......|.++.|+-+.+-+. ++++ .+...+..++...|++.+|...|++.++.. .-+... +..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3555666777777766654422 1222 134455667777777777777777754321 111111 1111
Q ss_pred HHHHHhccCCchhHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHhhhcC
Q 039715 450 VLRACASLAALEPGMQVHCLTVKANYDMDVVVANALIDMYAKCGSITDARLVFDMMN 506 (805)
Q Consensus 450 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 506 (805)
+-..-...+ ......+..+---+..+|.+.|+.++|+.+++.++
T Consensus 106 ~~~~ss~p~-------------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 106 TGNSASTPQ-------------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccCCCcc-------------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 100000000 00122344454556777778888888888888776
No 266
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=68.13 E-value=15 Score=30.90 Aligned_cols=59 Identities=8% Similarity=-0.053 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCC-CcchHHHHHHHHHhcCChHHHhh
Q 039715 610 QPSVMIWRALLGACIIHN---NVEIGRLSAQHILDFEPE-DEATHVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 610 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~ 668 (805)
.|+..+--.+.+++.+.. +..+|+.+++.+++..|. .-..+..|+-.+.+.|++++|.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~ 99 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR 99 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHH
Confidence 456666556666666554 456789999999998884 46678889999999999999998
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=67.02 E-value=23 Score=28.10 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHH
Q 039715 326 DAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALM 385 (805)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 385 (805)
+..+-++.+....+.|+.......|+||.+.+++..|.++++-+...- .....+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 555666666677788888889999999999999988888888776542 22233455444
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.49 E-value=35 Score=28.67 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 039715 527 AEVLKVFDLMQQRGWRPNNLTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHYTSMVS 589 (805)
Q Consensus 527 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 589 (805)
-+..+-++.+....+-|++......|.||.+.+++..|.++|+.++.+- .+....|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 3455566667777789999999999999999999999999999988763 444566777754
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.89 E-value=1.1e+02 Score=28.88 Aligned_cols=47 Identities=6% Similarity=0.006 Sum_probs=21.2
Q ss_pred cCCchhHHHHHHHHHHcCCCCcHh--HHHHHHHHHHhcCCHHHHHHHhh
Q 039715 457 LAALEPGMQVHCLTVKANYDMDVV--VANALIDMYAKCGSITDARLVFD 503 (805)
Q Consensus 457 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~y~~~g~~~~A~~~~~ 503 (805)
.+..+...++.+.+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344444455666666666544321 11122233344455555444444
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.43 E-value=1e+02 Score=29.30 Aligned_cols=209 Identities=16% Similarity=0.180 Sum_probs=109.4
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHcCCCCCcc---hHHHHHHHHHhCCCchHHHHHhccCCCC---CcchHHHHHHHHHc
Q 039715 61 TSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLF---ATNVLLNVYVKLNRLPDATKLFDEMPER---NTISFVTTIQGYTV 134 (805)
Q Consensus 61 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~ 134 (805)
+.|....+.|+.+....+ ++.|..++.. ...+.+...+..|+.+-...+++.-..+ |...++.|..+ +.
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA-AI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH-HH
Confidence 445555667787655544 5566554432 2234566667888888888888764433 23333344333 34
Q ss_pred CCChhHHHHHHHHHHhCCCCCCcc---hHHHHHHHHhccCCccchhhHHHHHHHhCCCCchh------------hHHHHH
Q 039715 135 SSQFVEAVGLFSTLHREGHELNPF---AFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAF------------VGTALI 199 (805)
Q Consensus 135 ~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------------~~~~li 199 (805)
.|+. ++++.+.+.|..++.. ..+. +...+..|+. .+.+.+++.|..++.. ...+.+
T Consensus 82 ~~~~----~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 82 AGSV----KLLKLFLSKGADVNECDFYGFTA-FMEAAVYGKV----KALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HTCH----HHHHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCH----HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred cCCH----HHHHHHHHcCCCCCccCcccCCH-HHHHHHhCCH----HHHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 4554 3555556667666533 2223 3334444543 4556666666555432 112334
Q ss_pred HHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCc
Q 039715 200 DAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNN---FTFAFVLKACLGLDTIRVAKSAHGCALKTCYEMD 276 (805)
Q Consensus 200 ~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 276 (805)
...++.|+.+-++.+++. .|..++. ...+.+..++ ..+......++.+.+++.|..++
T Consensus 153 ~~A~~~~~~~~v~~Ll~~------------------~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDE------------------MGADVNACDNMGRNALIHAL-LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHTCHHHHHHHHHT------------------SCCCTTCCCTTSCCHHHHHH-HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHcCCHHHHHHHHHh------------------cCCCCCccCCCCCCHHHHHH-HccccchHHHHHHHHHHcCCCCC
Confidence 444455655544333331 1444332 2223333333 33444444567777777776554
Q ss_pred Hh--HHHHHHHHHHcCCChHHHHHHHhh
Q 039715 277 LY--VAVALLDLYTKSGEISNARRIFEE 302 (805)
Q Consensus 277 ~~--~~~~li~~y~~~g~~~~A~~~f~~ 302 (805)
.. ...+.+...++.|..+-+..+++.
T Consensus 214 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 241 (285)
T 1wdy_A 214 VRGERGKTPLILAVEKKHLGLVQRLLEQ 241 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred CcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 32 223445566778888888888873
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=58.89 E-value=2.1e+02 Score=31.35 Aligned_cols=367 Identities=11% Similarity=-0.017 Sum_probs=191.7
Q ss_pred chHHHHHHHHHhCCCchHHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccC
Q 039715 92 FATNVLLNVYVKLNRLPDATKLFDEMPERNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNPFAFTAFLKVLVSMG 171 (805)
Q Consensus 92 ~~~~~ll~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 171 (805)
.+-+.-+..+++.+++......+.. +..+...--....+....|+..+|......+-..|- ..+.....++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCC
Confidence 3445566777888899988887776 422333333456677778888888888877776553 34556777777777666
Q ss_pred Cccchh--hHHHHHHHhC-----------CCCch-hhHHHHHHHHHhcCCHHHHH--------------HHHhhhccccH
Q 039715 172 WAELCP--CVFACVYKLG-----------HDSNA-FVGTALIDAFSVCGCVEFAR--------------KVFDGLFNDCF 223 (805)
Q Consensus 172 ~~~~a~--~~~~~~~~~g-----------~~~~~-~~~~~li~~y~~~g~~~~A~--------------~~~~~~~~g~~ 223 (805)
.+.... +=...+...| ++++. .....++..+.+-..+.... ..+.++...+.
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~ 230 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDA 230 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCH
Confidence 544321 1111111111 12222 22233444333322222111 12333345577
Q ss_pred HHHHHHHHHHHHCCCCCChhh----HHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHcCCChHHHHHH
Q 039715 224 EEALNFFSQMRAVGFKPNNFT----FAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLYVAVALLDLYTKSGEISNARRI 299 (805)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 299 (805)
+.|..+|........ .+... ...+.......+....+...+....... .+.....-.+....+.|+.+.|.+.
T Consensus 231 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 231 ENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHH
Confidence 889999988865432 23222 2223333344453445555555544332 2332333344445577999999999
Q ss_pred HhhCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCc
Q 039715 300 FEEMPKKDVI---PWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLS 376 (805)
Q Consensus 300 f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 376 (805)
|+.|+..... ..--+..++...|+.++|..+|+.+... .+|-.++.+ .+.|..-.. .. ....+
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa-~~Lg~~~~~-~~------~~~~~ 373 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAA-QRIGEEYEL-KI------DKAPQ 373 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHH-HHTTCCCCC-CC------CCCCS
T ss_pred HHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHH-HHcCCCCCC-CC------CCCCh
Confidence 9999874321 2344566788899999999999998642 234444332 222211000 00 00000
Q ss_pred ---cH---HHHHHHHHHHHhcCChHHHHHHHhcCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHhhcCC----CCChh
Q 039715 377 ---DV---FVSNALMDVYAKCGRMENSVELFAESPK-RNHVTWNTMIVGYVQLGEVGKAMIMFSKMLEEQV----PATEV 445 (805)
Q Consensus 377 ---~~---~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~ 445 (805)
.. .....-+..+...|....|...+..+.+ .+......+.......|.++.++.........+. -| .
T Consensus 374 ~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P--~ 451 (618)
T 1qsa_A 374 NVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP--L 451 (618)
T ss_dssp CCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC--C
T ss_pred hHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC--c
Confidence 00 0111234456678888888877665433 2333333444455667777777765544332210 01 1
Q ss_pred hHHHHHHHHhccCCchhHHHHHHHHHHcCCCCcH
Q 039715 446 TYSSVLRACASLAALEPGMQVHCLTVKANYDMDV 479 (805)
Q Consensus 446 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 479 (805)
.|...+...++.-.++...-.--...++++.|+.
T Consensus 452 ~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a 485 (618)
T 1qsa_A 452 AYNDLFKRYTSGKEIPQSYAMAIARQESAWNPKV 485 (618)
T ss_dssp TTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTTC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCCC
Confidence 3455555555555555543332233445555543
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.61 E-value=49 Score=34.58 Aligned_cols=96 Identities=9% Similarity=-0.049 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCC------CCHhHHHHHHHHHHhCCChHHHHHHHHHHHH---cCCCCCHHHHH--
Q 039715 481 VANALIDMYAKCGSITDARLVFDMMND------WNEVSWNAMISGYSMHGLSAEVLKVFDLMQQ---RGWRPNNLTFV-- 549 (805)
Q Consensus 481 ~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~-- 549 (805)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-.++..+...+++..+...+++... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455667777777777777777776652 1344566677777777888888877777653 22223222111
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhcC
Q 039715 550 GVLSACSNGGLLEQGEAYFKSMVANYG 576 (805)
Q Consensus 550 ~ll~a~~~~g~~~~a~~~~~~m~~~~~ 576 (805)
.-...+...+++.+|-+.|-.+...+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 111124567888888888877765543
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=52.99 E-value=16 Score=35.11 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=44.4
Q ss_pred HHHHhcCCHHHHHHHHH-cCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcch
Q 039715 589 SLLGRAGHLDKAAKLIE-GIPFQP-SVMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEAT 649 (805)
Q Consensus 589 ~~~~~~g~~~eA~~~~~-~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 649 (805)
..+.+.|.+++|++.+. ++..+| |...-..|...++..|+++.|..-++.+.+++|+....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 34567888888887665 333344 56666777788888888888888888888888865443
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=51.16 E-value=59 Score=27.31 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhccCCchHHHHHHHHHHHhCCCccHHHHHHHH
Q 039715 326 DAVELFCRMRQAFVAPNQFTFVSVLQACATMEGLDLGNQIHSLVVRVGLLSDVFVSNALM 385 (805)
Q Consensus 326 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 385 (805)
+..+-++.+....+.|+.......|++|.+.+|+..|..+++-+...- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455566666677788999999999999999999999999998876543 23344555544
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.63 E-value=39 Score=35.35 Aligned_cols=96 Identities=10% Similarity=-0.053 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCChHHH----H
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNN--LTFVGVLSACSNGGLLEQGEAYFKSMVANYGIEPCIEHY----T 585 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~----~ 585 (805)
++..+..-|.+.|++++|.+.|.++...-..+.. ..+..++..+...+++..+..+..++.....-.++.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888899999999999999999986444443 367788888999999999999999987554333443222 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHcC
Q 039715 586 SMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 586 ~li~~~~~~g~~~eA~~~~~~~ 607 (805)
+-+-.+...+++.+|-+.|-++
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2233445678999998877654
No 276
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.27 E-value=95 Score=31.32 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhCCCCCc---ccHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCChh
Q 039715 280 AVALLDLYTKSGEISNARRIFEEMPKKDV---IPWSFMIARYAQTDL--SIDAVELFCRMRQAFVAPNQF 344 (805)
Q Consensus 280 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 344 (805)
.+.++.=|...|+.++|.+.++++..+.. +...++..++-+.++ .+....++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 34677778888999999999999976632 224445555554333 345778888888776554443
No 277
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=47.70 E-value=5.6 Score=25.00 Aligned_cols=17 Identities=29% Similarity=0.731 Sum_probs=11.7
Q ss_pred CCccccc-cccccCCCCC
Q 039715 788 VHRFHHF-QDGCCSCGDF 804 (805)
Q Consensus 788 ~~~~h~~-~~g~csc~~~ 804 (805)
|-.-|.. ++|.||||-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 3344444 5899999976
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=44.97 E-value=1.7e+02 Score=26.08 Aligned_cols=153 Identities=13% Similarity=0.062 Sum_probs=65.6
Q ss_pred CcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh
Q 039715 275 MDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACA 354 (805)
Q Consensus 275 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 354 (805)
+|..+....+..+.+.|..+....+.+.+..++...-...+.++...|.. ++...+..+.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 44444444455555555544444444444444444444444555555543 23333333332 244444445555555
Q ss_pred ccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 039715 355 TMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSK 434 (805)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 434 (805)
..++.+....+... . -.++..+....+.+..+.|..+....+.+.+..++...-...+.++.+.|. .++...+.+
T Consensus 102 ~~~~~~~~~~L~~~-l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~ 176 (201)
T 3ltj_A 102 QIGDERAVEPLIKA-L---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 176 (201)
T ss_dssp HHCCGGGHHHHHHH-T---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HhCcHHHHHHHHHH-H---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 55543322222221 1 134444555555555555543333333333333443333333444444433 234444444
Q ss_pred Hh
Q 039715 435 ML 436 (805)
Q Consensus 435 m~ 436 (805)
+.
T Consensus 177 ~l 178 (201)
T 3ltj_A 177 LA 178 (201)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 279
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.70 E-value=43 Score=31.77 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=28.0
Q ss_pred HHhccCCccchhhHHHHHHHhCCCCchhh-------HHHHHHHHH--hcCCHHHHHHHHh
Q 039715 166 VLVSMGWAELCPCVFACVYKLGHDSNAFV-------GTALIDAFS--VCGCVEFARKVFD 216 (805)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~y~--~~g~~~~A~~~~~ 216 (805)
..++.|+.+..+.+++.+.+.|...+... .+.|..+.. +.|+.+-++.+++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~ 70 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH
Confidence 34456777777777777777765554332 233333321 4566665555554
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.33 E-value=1.3e+02 Score=30.25 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCC---HhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCC
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMNDWN---EVSWNAMISGYSMHGL--SAEVLKVFDLMQQRGWRPN 544 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 544 (805)
.+.++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 4677888999999999999999998652 3345555556555433 3457777877877765543
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.79 E-value=1.9e+02 Score=25.90 Aligned_cols=153 Identities=13% Similarity=0.065 Sum_probs=62.8
Q ss_pred CcHhHHHHHHHHHHcCCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHh
Q 039715 275 MDLYVAVALLDLYTKSGEISNARRIFEEMPKKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACA 354 (805)
Q Consensus 275 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 354 (805)
++..+....+..+.+.|+.+....+.+.+..++...-...+.++.+.+.. ++...+.++.. .+|...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444444445455444344444444444444444444445444442 23333333332 234444444445555
Q ss_pred ccCCchHHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 039715 355 TMEGLDLGNQIHSLVVRVGLLSDVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGEVGKAMIMFSK 434 (805)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 434 (805)
..++.+....+.. +. -.++..+....+.+..+.|..+....+.+.+.+++...-...+.++.+.+. .++...+.+
T Consensus 107 ~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~ 181 (211)
T 3ltm_A 107 QIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 181 (211)
T ss_dssp HHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 4444332222222 11 134444444555555555544333333333333443333333444444443 334444444
Q ss_pred Hh
Q 039715 435 ML 436 (805)
Q Consensus 435 m~ 436 (805)
+.
T Consensus 182 ~l 183 (211)
T 3ltm_A 182 LA 183 (211)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 282
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.57 E-value=1.1e+02 Score=30.04 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCChHHHHHHHhhCCCCCc---ccHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCCh
Q 039715 281 VALLDLYTKSGEISNARRIFEEMPKKDV---IPWSFMIARYAQTDL--SIDAVELFCRMRQAFVAPNQ 343 (805)
Q Consensus 281 ~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 343 (805)
..++.=|...|+.++|.+.++++..|.. +...++..++-+.++ .+....++..+.+.|+-+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 3567778888999999999999876522 223444445444333 34566788888776654433
No 283
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=41.40 E-value=1.4e+02 Score=30.74 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=12.6
Q ss_pred HHHHHHhCCCchHHHHHhccCC
Q 039715 97 LLNVYVKLNRLPDATKLFDEMP 118 (805)
Q Consensus 97 ll~~~~~~g~~~~A~~~f~~~~ 118 (805)
.+..-+..|+++-...+++.-.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~ 38 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGA 38 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHcCC
Confidence 3344456667766666666533
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.10 E-value=1.4e+02 Score=27.36 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=72.7
Q ss_pred HHHhhcCCChHHHHHHHHHHHHcCCCCCcc--hHHHHHHHHHhCCCchHHHHHhccCCCC---CcchHHHHHHHHHcCCC
Q 039715 63 LQSCIQNDDLQTAMTIHCQVLKKGNCLDLF--ATNVLLNVYVKLNRLPDATKLFDEMPER---NTISFVTTIQGYTVSSQ 137 (805)
Q Consensus 63 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~ 137 (805)
|......|+.+....+.+.+.+.+..++.. ...+.+...+..|+.+-...+++.-..+ |...++.+. ..+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH-LACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH-HHHHcCC
Confidence 444556788888888877777776654432 2234455566788888877777654333 222333333 3345667
Q ss_pred hhHHHHHHHHHHhCCCCCCc---chHHHHHHHHhccCCccchhhHHHHHHHhCCCCchh---hHHHHHHHHHhcCCHH
Q 039715 138 FVEAVGLFSTLHREGHELNP---FAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAF---VGTALIDAFSVCGCVE 209 (805)
Q Consensus 138 ~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~y~~~g~~~ 209 (805)
.+-...+++.....++.++. .-.+. +...+..|+. ++.+.+++.|..++.. ...+.+...++.|+.+
T Consensus 92 ~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 92 PTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp HHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHH
Confidence 66555555544322222222 22222 2333334443 4555666666554432 2233444444555544
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.23 E-value=1e+02 Score=25.70 Aligned_cols=63 Identities=10% Similarity=0.212 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHhhcCCCCC
Q 039715 381 SNALMDVYAKCGRMENSVELFAESPKRN---HVTWNTMIVGYVQLGE--VGKAMIMFSKMLEEQVPAT 443 (805)
Q Consensus 381 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 443 (805)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567778888889999999888887552 2234444455554432 3557778888877664443
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.48 E-value=1.8e+02 Score=27.31 Aligned_cols=87 Identities=10% Similarity=0.032 Sum_probs=45.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHh--CCCCC----CcchHHHHHHHHhccCCccchhhHHHHHHHhCCCCchhhHHHHHHHH
Q 039715 129 IQGYTVSSQFVEAVGLFSTLHR--EGHEL----NPFAFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAFVGTALIDAF 202 (805)
Q Consensus 129 i~~~~~~g~~~~A~~~~~~m~~--~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 202 (805)
+..+....++++|.+++++..+ .++++ +.......++.-.....-..+..+...+ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 4556666777777777766543 12221 1122233333333322233333443333 22 44555566667778
Q ss_pred HhcCCHHHHHHHHhhh
Q 039715 203 SVCGCVEFARKVFDGL 218 (805)
Q Consensus 203 ~~~g~~~~A~~~~~~~ 218 (805)
.+.|+-+.|..+|=+.
T Consensus 102 ~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHH
Confidence 8888888888887644
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.98 E-value=82 Score=33.50 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI 607 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~ 607 (805)
.++.++..|...+.++.|..++.+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3444444444445555555554444
No 288
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=36.34 E-value=15 Score=23.32 Aligned_cols=11 Identities=27% Similarity=0.881 Sum_probs=9.5
Q ss_pred eeeccCcchhh
Q 039715 761 NLRICVDCHTA 771 (805)
Q Consensus 761 ~~~~c~~~h~~ 771 (805)
+.|+|.+|+.-
T Consensus 16 ~YRvC~~CgkP 26 (44)
T 2lo3_A 16 QYRVCEKCGKP 26 (44)
T ss_dssp CEEECTTTCCE
T ss_pred cchhhcccCCc
Confidence 89999999854
No 289
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=35.76 E-value=59 Score=34.65 Aligned_cols=77 Identities=8% Similarity=-0.053 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 039715 583 HYTSMVSLLGRAGHLDKAAKLIEGI-PFQPS-VMIWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNIYAM 659 (805)
Q Consensus 583 ~~~~li~~~~~~g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 659 (805)
...+|+|+..-.+.++.|..+|.++ ...|+ ...|+.|+-.....|+.-+|.-.|-+.+-.....+.+..+|..++.+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 3445566666666677777777654 23343 34677776666667777777777666666555566666666666654
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.46 E-value=3.3e+02 Score=26.67 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC
Q 039715 382 NALMDVYAKCGRMENSVELFAESPKR 407 (805)
Q Consensus 382 ~~Li~~y~~~g~~~~A~~~f~~~~~~ 407 (805)
..++.-|...|+.++|...++++..|
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 45666677777777777777777654
No 291
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=35.46 E-value=3.2e+02 Score=26.63 Aligned_cols=270 Identities=15% Similarity=0.148 Sum_probs=122.8
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHcCCCCCcch---HHHHHHHHHhCCCchHHHHHhccCCCC---CcchHHHHHHHHH
Q 039715 60 ATSLQSCIQNDDLQTAMTIHCQVLKKGNCLDLFA---TNVLLNVYVKLNRLPDATKLFDEMPER---NTISFVTTIQGYT 133 (805)
Q Consensus 60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~ 133 (805)
++.|....+.|+++..+.+ ++.|..++... ..+-+..-++.|+.+-+.-+++.-..+ +....+.+.. ..
T Consensus 26 ~t~L~~Av~~g~~~~V~~L----L~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~-~~ 100 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFIL-AA 100 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHH----HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH-HH
T ss_pred ChHHHHHHHcCCHHHHHHH----HHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHH-HH
Confidence 4555556678888766555 56676665421 223444556788888888777754332 2222222222 22
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCcc---hHHHHHHHHhccCCccchhhHHHHHHHhCCCCchh-------------hHHH
Q 039715 134 VSSQFVEAVGLFSTLHREGHELNPF---AFTAFLKVLVSMGWAELCPCVFACVYKLGHDSNAF-------------VGTA 197 (805)
Q Consensus 134 ~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------------~~~~ 197 (805)
..+.... .......+..++.. -++.+. ..+..|..+ +...+++.|..++.. -.+.
T Consensus 101 ~~~~~~~----~~~~~~~~~~~~~~d~~g~t~l~-~A~~~~~~~----~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~ 171 (337)
T 4g8k_A 101 IAGSVKL----LKLFLSKGADVNECDFYGFTAFM-EAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171 (337)
T ss_dssp HHTCHHH----HHHHHTTTCCTTCBCTTCCBHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCCCC-----CTTCSCCH
T ss_pred hcccchh----hHHhhhccchhhhhccCCCCHHH-HHHHcCcHH----HHHHHHHcCCCcchhhccccccccccCCCCcH
Confidence 2222222 22233333333221 122222 223334333 344445555433221 1122
Q ss_pred HHHHHHhcCCHHHHHHHHhhhccccHHHHHHHHHHHHHCCCCCChh---hHHHHHHH--hhCCCCHHHHHHHHHHHHHhC
Q 039715 198 LIDAFSVCGCVEFARKVFDGLFNDCFEEALNFFSQMRAVGFKPNNF---TFAFVLKA--CLGLDTIRVAKSAHGCALKTC 272 (805)
Q Consensus 198 li~~y~~~g~~~~A~~~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g 272 (805)
+...++.|+.+-++.+++ +.|..++.. ..+.+..+ ....+..+ .+.+.+++.|
T Consensus 172 -L~~A~~~g~~~~v~~LL~------------------~~gad~n~~d~~g~t~l~~~~~~~~~~~~~---~i~~lLl~~g 229 (337)
T 4g8k_A 172 -LMDAAEKGHVEVLKILLD------------------EMGADVNACDNMGRNALIHALLSSDDSDVE---AITHLLLDHG 229 (337)
T ss_dssp -HHHHHHHTCHHHHHHHHH------------------HSCCCTTCCCTTSCCHHHHHHHHSCTTTHH---HHHHHHHHTT
T ss_pred -HHHHHHCCCHHHHHHHHh------------------ccCCCcCccCCCCCcHHHHHHHHcCcccHH---HHHHHHHHCC
Confidence 233344555543333322 235444322 11222222 22233333 3445566777
Q ss_pred CCCcHh--HHHHHHHHHHcCCChHHHHHHHhhCC----CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHH
Q 039715 273 YEMDLY--VAVALLDLYTKSGEISNARRIFEEMP----KKDVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTF 346 (805)
Q Consensus 273 ~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 346 (805)
..++.. ...+.+...++.|..+....+++.-. .+|..-++.|..+ ++.|+.+ +.+.+++.|..+|..+
T Consensus 230 ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~- 303 (337)
T 4g8k_A 230 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD- 303 (337)
T ss_dssp CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC-
T ss_pred CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC-
Confidence 655432 12233455667888888877776421 1232224444433 4556543 4445566777777654
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCcc
Q 039715 347 VSVLQACATMEGLDLGNQIHSLVVRVGLLSD 377 (805)
Q Consensus 347 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 377 (805)
.+...+..|+.+ +.+.+++.|-.+|
T Consensus 304 --~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 304 --LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp --HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred --HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 233333444433 4455666665555
No 292
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.69 E-value=1.7e+02 Score=26.71 Aligned_cols=21 Identities=10% Similarity=-0.181 Sum_probs=9.6
Q ss_pred HhCCChhHHHHHHHHHHHCCC
Q 039715 319 AQTDLSIDAVELFCRMRQAFV 339 (805)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~ 339 (805)
++.|+.+-...+++.+.+.|.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 444555544444444444443
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.47 E-value=2e+02 Score=23.87 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCC
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGL--SAEVLKVFDLMQQRGWRP 543 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 543 (805)
.+.+++-|...|+.++|.+.++++..| ..+...++..++-+.+. .+....++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456788888889999999999988755 23344455555555432 345677777777666543
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.30 E-value=94 Score=26.85 Aligned_cols=63 Identities=10% Similarity=0.212 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHhhcCCCCC
Q 039715 381 SNALMDVYAKCGRMENSVELFAESPKRN---HVTWNTMIVGYVQLGE--VGKAMIMFSKMLEEQVPAT 443 (805)
Q Consensus 381 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 443 (805)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567778888888999988888886652 2234444445544322 3456777777776664433
No 295
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.46 E-value=4.6e+02 Score=27.21 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=49.0
Q ss_pred CCcchHHHHHHHHhccCCccchhhHHHHHHHhCC-C---CchhhHHHHHHHHHhc-------C--CHHHHHHHHhhhccc
Q 039715 155 LNPFAFTAFLKVLVSMGWAELCPCVFACVYKLGH-D---SNAFVGTALIDAFSVC-------G--CVEFARKVFDGLFND 221 (805)
Q Consensus 155 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~---~~~~~~~~li~~y~~~-------g--~~~~A~~~~~~~~~g 221 (805)
.+......+... ..|+...+..+++.+..... . ....+-..+-.+..+. | .++....+.+.+...
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgs 269 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGS 269 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCC
Confidence 344444444444 35666677777766665532 1 1122222222222221 1 123333344455677
Q ss_pred cHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 039715 222 CFEEALNFFSQMRAVGFKPNNFTFAFVLKA 251 (805)
Q Consensus 222 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 251 (805)
+.+.|+.++.+|.+.|..|....-..+..+
T Consensus 270 d~daAl~~la~ml~~Gedp~~i~rrl~~~a 299 (447)
T 3pvs_A 270 APDAALYWYARIITAGGDPLYVARRCLAIA 299 (447)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 888888888888888876654443333333
No 296
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.33 E-value=2.2e+02 Score=25.89 Aligned_cols=43 Identities=12% Similarity=-0.171 Sum_probs=22.9
Q ss_pred HHHHCCCCCChhh--HHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q 039715 232 QMRAVGFKPNNFT--FAFVLKACLGLDTIRVAKSAHGCALKTCYE 274 (805)
Q Consensus 232 ~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 274 (805)
.+.+.|..++... -.+.+...+..|+.+.+..+.+.+++.|..
T Consensus 139 ~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 139 LLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 3344565554321 122344445567777666666777766643
No 297
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.00 E-value=4.1e+02 Score=26.12 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=33.2
Q ss_pred HHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 039715 604 IEGIPFQPS--VMIWRALLGACIIHNNVEIGRLSAQHILDFEPE 645 (805)
Q Consensus 604 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 645 (805)
|...+++|. ..+..+-++.+.+++|+..|...+++++++.|.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 444455554 346777778899999999999999999999995
No 298
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=29.78 E-value=2.5e+02 Score=28.84 Aligned_cols=332 Identities=12% Similarity=0.080 Sum_probs=156.7
Q ss_pred HHHhhcCCChHHHHHHHHHHHHcCCCCCcc--hHHHHHHHHHhCCCchHHHHHhccCCC---CCcchHHHHHHHHHcCCC
Q 039715 63 LQSCIQNDDLQTAMTIHCQVLKKGNCLDLF--ATNVLLNVYVKLNRLPDATKLFDEMPE---RNTISFVTTIQGYTVSSQ 137 (805)
Q Consensus 63 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 137 (805)
|...+..|+.+....+ ++.|..++.. ...+.+...++.|+.+-+..+++.-.. ++...++.|.. .+..|+
T Consensus 18 L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~g~ 92 (437)
T 1n11_A 18 LHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHC-AARIGH 92 (437)
T ss_dssp HHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHH-HHHHTC
T ss_pred HHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH-HHHCCC
Confidence 3444456677655444 5566655432 223445556778888888888875433 23333344433 345566
Q ss_pred hhHHHHHHHHHHhCCCCCCcch--HHHHHHHHhccCCccchhhHHHHHHHhCCCCch--hhHHHHHHHHHhcCCHHHHHH
Q 039715 138 FVEAVGLFSTLHREGHELNPFA--FTAFLKVLVSMGWAELCPCVFACVYKLGHDSNA--FVGTALIDAFSVCGCVEFARK 213 (805)
Q Consensus 138 ~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~ 213 (805)
.+ +++.+.+.|..|+... -.+.+...+..|+.+..+ .+++.+...+. ....+.+...++.|+.+-++
T Consensus 93 ~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~- 163 (437)
T 1n11_A 93 TN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL----ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE- 163 (437)
T ss_dssp HH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHH----HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHH-
T ss_pred HH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHH----HHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHH-
Confidence 54 3444444555554321 112333444555554433 34444433221 11122344445556554333
Q ss_pred HHhhhccccHHHHHHHHHHHHHCCCCCChhh--HHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCcHh--HHHHHHHHHHc
Q 039715 214 VFDGLFNDCFEEALNFFSQMRAVGFKPNNFT--FAFVLKACLGLDTIRVAKSAHGCALKTCYEMDLY--VAVALLDLYTK 289 (805)
Q Consensus 214 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~ 289 (805)
.+.+.|..|+... -.+.+...+..|+.+ +.+.+++.|..++.. ...+.+...++
T Consensus 164 ------------------~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 221 (437)
T 1n11_A 164 ------------------LLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAK 221 (437)
T ss_dssp ------------------HHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHH
T ss_pred ------------------HHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHH
Confidence 3334455444321 112233334455554 344445555443321 11233445567
Q ss_pred CCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhccCCchHHH
Q 039715 290 SGEISNARRIFEEMPKK---DVIPWSFMIARYAQTDLSIDAVELFCRMRQAFVAPNQ---FTFVSVLQACATMEGLDLGN 363 (805)
Q Consensus 290 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~ 363 (805)
.|+.+-+..+++.-... +...++.|. ..+..|+.+ +++.+.+.|..++. ...+. +...+..|+.+.
T Consensus 222 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~-- 293 (437)
T 1n11_A 222 QNQVEVARSLLQYGGSANAESVQGVTPLH-LAAQEGHAE----MVALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPV-- 293 (437)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHH----HHHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHH--
T ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHCCCHH----HHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHH--
Confidence 78888777777654332 222233333 334556544 33444445544332 11222 333344555544
Q ss_pred HHHHHHHHhCCCccHH--HHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 039715 364 QIHSLVVRVGLLSDVF--VSNALMDVYAKCGRMENSVELFAESPKR---NHVTWNTMIVGYVQLGEVGKAMIMFSKMLEE 438 (805)
Q Consensus 364 ~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 438 (805)
.+.+++.|...+.. ...+.+...+..|+.+-+.-+++.-... |..-++.|.. .++.|+.+ +.+.+.+.
T Consensus 294 --~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~~----iv~~Ll~~ 366 (437)
T 1n11_A 294 --ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ-AAQQGHTD----IVTLLLKN 366 (437)
T ss_dssp --HHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHT
T ss_pred --HHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHH-HHHCChHH----HHHHHHHC
Confidence 44445555443321 1223445556788888887777754433 2223333333 34556654 34444556
Q ss_pred CCCCChh
Q 039715 439 QVPATEV 445 (805)
Q Consensus 439 g~~p~~~ 445 (805)
|..|+..
T Consensus 367 ga~~~~~ 373 (437)
T 1n11_A 367 GASPNEV 373 (437)
T ss_dssp TCCSCCC
T ss_pred cCCCCCC
Confidence 7666543
No 299
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.63 E-value=2.5e+02 Score=26.78 Aligned_cols=11 Identities=0% Similarity=0.123 Sum_probs=4.6
Q ss_pred HhhcCCCCChh
Q 039715 435 MLEEQVPATEV 445 (805)
Q Consensus 435 m~~~g~~p~~~ 445 (805)
+.+.|..|+..
T Consensus 214 Ll~~gad~~~~ 224 (285)
T 3kea_A 214 LFKYDINIYSA 224 (285)
T ss_dssp HTTSCBCSTTT
T ss_pred HHHcCCCCCCC
Confidence 34444444433
No 300
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=29.36 E-value=2e+02 Score=26.10 Aligned_cols=50 Identities=6% Similarity=0.101 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 039715 359 LDLGNQIHSLVVRVGLLSD-VFVSNALMDVYAKCGRMENSVELFAESPKRN 408 (805)
Q Consensus 359 ~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 408 (805)
......+|..|...|+... ...|......+...|++.+|.++|+.-.+..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3455555555555554322 3344555555555666666666665544333
No 301
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=28.44 E-value=3.4e+02 Score=24.63 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC
Q 039715 512 SWNAMISGYSMHGLSAEVLKVFDLMQQRGWRPNNL-TFVGVLSACSNGGLLEQGEAYFKSMVANYGIEP 579 (805)
Q Consensus 512 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 579 (805)
.|-..+..+ ..+...++.++|..|...|+--... -|......+...|++.+|.++|+.-++. +-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 444444433 2344567777777777777655543 4555555667777777777777776654 5555
No 302
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=28.19 E-value=4.9e+02 Score=26.48 Aligned_cols=93 Identities=9% Similarity=-0.005 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCC----CC-----HhHHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCCHHHH--H
Q 039715 483 NALIDMYAKCGSITDARLVFDMMND----WN-----EVSWNAMISGYSMHGLSAEVLKVFDLMQQR--GWRPNNLTF--V 549 (805)
Q Consensus 483 ~~li~~y~~~g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~--~ 549 (805)
.-|+..|...|++.+|.+++.++.+ .| +..+-.-+..|...|+..++...+.+.... .+.|++..- .
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 3566777777777777766665542 11 224445566677777777777777665432 122333221 1
Q ss_pred HHH--HHHH-cCCCHHHHHHHHHHHHHhc
Q 039715 550 GVL--SACS-NGGLLEQGEAYFKSMVANY 575 (805)
Q Consensus 550 ~ll--~a~~-~~g~~~~a~~~~~~m~~~~ 575 (805)
-.. -.+. ..+++.+|...|-+..+.|
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 111 1234 5677777777776665444
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=27.97 E-value=1.5e+02 Score=27.70 Aligned_cols=28 Identities=21% Similarity=0.129 Sum_probs=20.1
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 039715 578 EPCIEHYTSMVSLLGRAGHLDKAAKLIE 605 (805)
Q Consensus 578 ~p~~~~~~~li~~~~~~g~~~eA~~~~~ 605 (805)
.++.......+..+.|.|+.++|.++|-
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 3455555666778888888888888774
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.46 E-value=2e+02 Score=24.74 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCC---CHhHHHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCC
Q 039715 482 ANALIDMYAKCGSITDARLVFDMMNDW---NEVSWNAMISGYSMHGL--SAEVLKVFDLMQQRGWRP 543 (805)
Q Consensus 482 ~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 543 (805)
.+.+++-|...|+.++|.+.++++..| ..+...++..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456788888889999999999988755 23344455555555332 345667777777666443
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.45 E-value=3.5e+02 Score=24.47 Aligned_cols=65 Identities=9% Similarity=-0.029 Sum_probs=41.9
Q ss_pred ccHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccCC-----chHHHHHHHHHHHhCC
Q 039715 309 IPWSFMIARYAQ---TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATMEG-----LDLGNQIHSLVVRVGL 374 (805)
Q Consensus 309 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~ 374 (805)
...--+|+++.+ -.+++.|+-.+-+|++.| .|....-..++-+....|. +..+...++.....|.
T Consensus 12 d~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 12 DAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 344556676654 488999999999999999 7666666666666655553 2334444444455553
No 306
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.06 E-value=3.3e+02 Score=24.04 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 039715 377 DVFVSNALMDVYAKCGRMENSVELFAESPKRNHVTWNTMIVGYVQLGE 424 (805)
Q Consensus 377 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 424 (805)
|..+....+....+.|..+....+.+.+..+|...-...+.++...+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333334444444444443333333344444443333333344444443
No 307
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.16 E-value=2.7e+02 Score=26.57 Aligned_cols=20 Identities=5% Similarity=-0.112 Sum_probs=9.9
Q ss_pred HHHHHhcCChHHHHHHHhcC
Q 039715 385 MDVYAKCGRMENSVELFAES 404 (805)
Q Consensus 385 i~~y~~~g~~~~A~~~f~~~ 404 (805)
+...+..|+.+-+..+++.-
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHhCC
Confidence 33444555555555555443
No 308
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=25.52 E-value=14 Score=20.07 Aligned_cols=13 Identities=46% Similarity=1.518 Sum_probs=9.2
Q ss_pred ccccccc--CCCCCC
Q 039715 793 HFQDGCC--SCGDFW 805 (805)
Q Consensus 793 ~~~~g~c--sc~~~w 805 (805)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5777877 577666
No 309
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=25.35 E-value=20 Score=25.74 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=17.7
Q ss_pred ceEEEecCCccccccccccCCC
Q 039715 781 REIIIRDVHRFHHFQDGCCSCG 802 (805)
Q Consensus 781 ~~~~~~d~~~~h~~~~g~csc~ 802 (805)
..|=+.|....|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4566789999999999986543
No 310
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.28 E-value=3.7e+02 Score=28.52 Aligned_cols=61 Identities=7% Similarity=0.084 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcCCCCCh-h------hH-HHHHHHHHHcCChHHHHHHHHHHhhc
Q 039715 378 VFVSNALMDVYAKCGRMENSVELFAESPKRNH-V------TW-NTMIVGYVQLGEVGKAMIMFSKMLEE 438 (805)
Q Consensus 378 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~------~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 438 (805)
..++|.|+..|...+.+++|..+..+..-|.. . .| .-+...+.-.+++.+|.+.|....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46778889999999999999999887654421 1 22 22345667789999999998888764
No 311
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.66 E-value=3.6e+02 Score=24.28 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 039715 597 LDKAAKLIEGIPFQPSVM-------IWRALLGACIIHNNVEIGRLSAQHILDFEPEDEATHVLLSNI 656 (805)
Q Consensus 597 ~~eA~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 656 (805)
++.|+.+++.+.-.-|.. +-...+..|.+.|.+++|.+++++.++-.|++..--.-|.++
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 456777777664333321 122334569999999999999999999887776655555554
No 312
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.16 E-value=1.1e+02 Score=26.43 Aligned_cols=63 Identities=10% Similarity=-0.068 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHcCCCCcHhH-HHHHHHHHHhcCCHHHHHHHhhhcCCCCHhHHHHHHHHHHh
Q 039715 460 LEPGMQVHCLTVKANYDMDVVV-ANALIDMYAKCGSITDARLVFDMMNDWNEVSWNAMISGYSM 522 (805)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 522 (805)
.+...++|..|...|+-..... |......+...|++.+|.++|+.-.+.+......|...|..
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~ 144 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRL 144 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHH
No 313
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.12 E-value=2.6e+02 Score=24.52 Aligned_cols=18 Identities=6% Similarity=0.270 Sum_probs=11.2
Q ss_pred HHcCCChHHHHHHHhhCC
Q 039715 287 YTKSGEISNARRIFEEMP 304 (805)
Q Consensus 287 y~~~g~~~~A~~~f~~~~ 304 (805)
.+..|+.+....++..-.
T Consensus 12 A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT
T ss_pred HHHhccHHHHHHHHHcCC
Confidence 445677777777766543
No 314
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.00 E-value=1e+02 Score=28.86 Aligned_cols=28 Identities=18% Similarity=0.009 Sum_probs=17.6
Q ss_pred HHHHhccCCccchhhHHHHHHHhCCCCc
Q 039715 164 LKVLVSMGWAELCPCVFACVYKLGHDSN 191 (805)
Q Consensus 164 l~~~~~~~~~~~a~~~~~~~~~~g~~~~ 191 (805)
|...+..|+.+..+.+++.+.+.|..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 3444566777777777777777665443
No 315
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=23.60 E-value=3.7e+02 Score=23.66 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccC----------------CCCcc
Q 039715 587 MVSLLGRAGHLDKAAKLIEGIPFQPSVMIWRALLGACIIHNNVEIGRLSAQHIL--DFE----------------PEDEA 648 (805)
Q Consensus 587 li~~~~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~----------------p~~~~ 648 (805)
+.-++.-.|.+..++-++.... ...+.-|.+| .|....++..|+..++.++ +++ -|..-
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEf 115 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEF 115 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHH
T ss_pred hhhhhhhcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHH
Q ss_pred hHHHHHHHHHhcCChHHHhh
Q 039715 649 THVLLSNIYAMARSWEKAAS 668 (805)
Q Consensus 649 ~~~~l~~~~~~~g~~~~a~~ 668 (805)
.|..++.++...|..+||.+
T Consensus 116 Fy~l~a~lltq~g~r~EaI~ 135 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIG 135 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhh
No 316
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.30 E-value=1.4e+02 Score=25.09 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=52.0
Q ss_pred HHHhhcCCChHHHHHHHHHHHHcCCCCCc--chHHHHHHHHHhCCCchHHHHHhccCCCC---CcchHHHHHHHHHcCCC
Q 039715 63 LQSCIQNDDLQTAMTIHCQVLKKGNCLDL--FATNVLLNVYVKLNRLPDATKLFDEMPER---NTISFVTTIQGYTVSSQ 137 (805)
Q Consensus 63 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~ 137 (805)
|......|+.+....+... .+..++. ....+.+.. +..|+.+-+..+++.-..+ |...++.|..+ +..|+
T Consensus 6 L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~ 80 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR---ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDA-ARTGF 80 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTC
T ss_pred HHHHHHhCCHHHHHHHHHh---hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH-HHcCc
Confidence 3444556777777666554 1112221 122234444 7778888777777654332 33334444444 34455
Q ss_pred hhHHHHHHHHHHhCCCCCCcc---hHHHHHHHHhccCCccchhhHH
Q 039715 138 FVEAVGLFSTLHREGHELNPF---AFTAFLKVLVSMGWAELCPCVF 180 (805)
Q Consensus 138 ~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~ 180 (805)
.+ +++.+.+.|..++.. -.+ .+...+..|+.+.++.++
T Consensus 81 ~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll 121 (156)
T 1bd8_A 81 LD----TLKVLVEHGADVNVPDGTGAL-PIHLAVQEGHTAVVSFLA 121 (156)
T ss_dssp HH----HHHHHHHTTCCSCCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred HH----HHHHHHHcCCCCCCcCCCCCc-HHHHHHHhChHHHHHHHH
Confidence 43 334444556555432 222 333334455555444443
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.09 E-value=1.7e+02 Score=24.88 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=17.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 039715 313 FMIARYAQTDLSIDAVELFCRMRQAFVAPNQFTFVSVLQAC 353 (805)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 353 (805)
.++..+...+..-.|.++++.+.+.+...+..|..-.|..+
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 66 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVF 66 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 33344444344444444444444444333444443333333
No 318
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.66 E-value=2.9e+02 Score=24.85 Aligned_cols=46 Identities=13% Similarity=-0.002 Sum_probs=33.5
Q ss_pred HHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhccC
Q 039715 312 SFMIARYAQ---TDLSIDAVELFCRMRQAFVAPNQFTFVSVLQACATME 357 (805)
Q Consensus 312 ~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 357 (805)
--+|+++.+ -.+++.|+-.+-+|++.|-.|....-..++-+....|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345666654 4889999999999999987777766666666665444
No 319
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.28 E-value=3.1e+02 Score=24.73 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=7.5
Q ss_pred HHHcCCChHHHHHHHhh
Q 039715 286 LYTKSGEISNARRIFEE 302 (805)
Q Consensus 286 ~y~~~g~~~~A~~~f~~ 302 (805)
..++.|+.+-+..+++.
T Consensus 48 ~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 48 WAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHc
Confidence 33444444444444443
No 320
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.12 E-value=3.7e+02 Score=24.18 Aligned_cols=19 Identities=5% Similarity=-0.020 Sum_probs=11.9
Q ss_pred HHHHHhCCCchHHHHHhcc
Q 039715 98 LNVYVKLNRLPDATKLFDE 116 (805)
Q Consensus 98 l~~~~~~g~~~~A~~~f~~ 116 (805)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445566777777666654
No 321
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.04 E-value=4.1e+02 Score=23.90 Aligned_cols=16 Identities=6% Similarity=0.237 Sum_probs=8.5
Q ss_pred HHcCCChHHHHHHHhh
Q 039715 287 YTKSGEISNARRIFEE 302 (805)
Q Consensus 287 y~~~g~~~~A~~~f~~ 302 (805)
.++.|+.+....+++.
T Consensus 10 A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 10 AAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHh
Confidence 3445555555555554
No 322
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.77 E-value=4.2e+02 Score=23.48 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=3.8
Q ss_pred HHHHHHhcCC
Q 039715 384 LMDVYAKCGR 393 (805)
Q Consensus 384 Li~~y~~~g~ 393 (805)
.+..+.+.|.
T Consensus 39 A~~~L~~~~~ 48 (211)
T 3ltm_A 39 AAYALGKIGD 48 (211)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 3333333333
No 323
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.00 E-value=3.9e+02 Score=23.26 Aligned_cols=54 Identities=7% Similarity=0.067 Sum_probs=31.9
Q ss_pred HHHHhCCCchHHHHHhccCC-C---CCcchHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCc
Q 039715 99 NVYVKLNRLPDATKLFDEMP-E---RNTISFVTTIQGYTVSSQFVEAVGLFSTLHREGHELNP 157 (805)
Q Consensus 99 ~~~~~~g~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 157 (805)
...+..|+.+....+++.-. . +|...++.|..+ +..|+. ++++.+.+.|..|+.
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~ 67 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADINL 67 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTTC
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCCC
Confidence 34467889999999887654 2 333344555444 345554 455555566766654
No 324
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.51 E-value=4.8e+02 Score=23.58 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=36.4
Q ss_pred HhhhccccHHHHHHHHHHHHHCCCCCChhhHHHHHHHhhCCCC-----HHHHHHHHHHHHHhCC
Q 039715 215 FDGLFNDCFEEALNFFSQMRAVGFKPNNFTFAFVLKACLGLDT-----IRVAKSAHGCALKTCY 273 (805)
Q Consensus 215 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~ 273 (805)
-+.|+..+.+.|+-++-+|.+.| .|....-..++-+.-..|. +..+...++.....|.
T Consensus 22 ~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 22 QKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34557788889999999999999 6665555555555444443 3334444555555554
Done!