BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039716
         (1002 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359476452|ref|XP_002271743.2| PREDICTED: histidine kinase 5-like [Vitis vinifera]
          Length = 1012

 Score = 1448 bits (3749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 743/1023 (72%), Positives = 846/1023 (82%), Gaps = 34/1023 (3%)

Query: 1    MVCNMETDLIEDMDIEGLPSMWPEDIGSD--KQFNVERPGGGQDMLEEVTIPEDQTIVDF 58
            MVC ME D IE+MD+E L SMWPEDIG+D   QFN++RPG  QDMLEEV I E+ +IVDF
Sbjct: 1    MVCEMENDNIEEMDVEVLHSMWPEDIGNDAGNQFNMDRPGADQDMLEEVNIVEEPSIVDF 60

Query: 59   KRLLELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEH 118
            KRLLELTNY++KGSSQ+AYLVK+WEY+Q+NAVRLL+EELDNLSRQRQE ELKKLEILEEH
Sbjct: 61   KRLLELTNYSEKGSSQLAYLVKNWEYKQANAVRLLKEELDNLSRQRQEVELKKLEILEEH 120

Query: 119  RFEEEGYGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDL 178
            RF EE YGGDKRPISI+D + D+W++V  R+N VV Q+KR+E+DAEYDTV YWKQRA+ L
Sbjct: 121  RFVEERYGGDKRPISILDGIYDIWQEVPRRRNSVVVQNKRLEIDAEYDTVIYWKQRAVHL 180

Query: 179  EKMLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQ 238
            EK+LEAS QRE  LMEK+ ES+ +LE+QSSPVEELSQILKRADNFLHFVLQNAPVV+GHQ
Sbjct: 181  EKLLEASVQREHMLMEKVQESIKSLERQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQ 240

Query: 239  DKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFET 298
            DKELRYRFIYNHFPSL EEDI+GKTDVEIF+GAGVKESQ+FK+EVLE+GLPAKREITFET
Sbjct: 241  DKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKKEVLERGLPAKREITFET 300

Query: 299  ELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELN 358
            ELFGSKTFLIYVEPVFSK+G+TIGVNYMGMDVTDQVRKREKM K+REEIAVQKAKETELN
Sbjct: 301  ELFGSKTFLIYVEPVFSKAGDTIGVNYMGMDVTDQVRKREKMMKIREEIAVQKAKETELN 360

Query: 359  KTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLV 418
            KTIHITEETMRAKQMLATMSHEIRSPL+GVVS+AEIL+ T LDR QRQLL VM+SSGDLV
Sbjct: 361  KTIHITEETMRAKQMLATMSHEIRSPLSGVVSIAEILATTNLDRHQRQLLNVMLSSGDLV 420

Query: 419  LQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEV 478
            LQLINDILDLSKVESGVMKLEA KFRPREVVKHVLQTAAASLQKIL LEG +ADDVP+EV
Sbjct: 421  LQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVADDVPLEV 480

Query: 479  IGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAK-EGLKQKSKAYQSATDA-- 535
             GDVLRIRQILTNLISNA+KFT EGKVGI LYV+PEP     EG  Q     QS   A  
Sbjct: 481  TGDVLRIRQILTNLISNAVKFTHEGKVGINLYVIPEPSSGNGEGGPQMFIDDQSTVSANI 540

Query: 536  VKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDED------LEAT 589
             KEEK    SQ++    G H        Q+H  +D+P  P++H +S  ED      LE T
Sbjct: 541  PKEEKCLSPSQSSCTSKGSH-------TQNHALNDEPIDPINHDDSKQEDKENSHPLETT 593

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            VWIRCDVYDTGIGIPE+ALPTLF+KYMQVSADHARKYGGTGLGLAICKQLVELMGG +TV
Sbjct: 594  VWIRCDVYDTGIGIPEHALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGHMTV 653

Query: 650  TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLF 709
            +S+ H GSTFTFILPY+VS I ++SDDPD+LSDMAD D+ TDD  AGFFQF PRTLGSLF
Sbjct: 654  SSREHSGSTFTFILPYKVSLISDHSDDPDELSDMADDDASTDDKNAGFFQFHPRTLGSLF 713

Query: 710  SSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNN-RQKETAPLEDACSVAEVAETL 768
            SS G+ R++KL PN+IG+ S HK+NG S+ SYSFP N    KE   LED CSV + AETL
Sbjct: 714  SSGGSGRTQKLPPNNIGYDSLHKLNGLSDDSYSFPFNKVTSKEMTSLEDTCSVVDAAETL 773

Query: 769  SEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQ 828
            SEPES   H+ EP+N+  VSRGK+C  E      N +T ST HS+ ++E+ +  KT+E  
Sbjct: 774  SEPESLLRHNAEPDNDNAVSRGKKCQDEANGQVHNHSTGSTHHSKVSKEVDEMGKTSEAP 833

Query: 829  KICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDV 888
            ++C   E  +R SQ  SSSS E  E K   KPKILLVED+KINVMV +SMMKQLGH+IDV
Sbjct: 834  EMCLRLEISERSSQCTSSSSPE--EPKSTLKPKILLVEDSKINVMVTQSMMKQLGHTIDV 891

Query: 889  VNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948
            VNNG+EAV AVQC++YDLILMDVCMPVMDGL+ATR+IRSFE+TGNWDAA +AGIE   PS
Sbjct: 892  VNNGIEAVRAVQCRSYDLILMDVCMPVMDGLQATRIIRSFEETGNWDAAVKAGIE---PS 948

Query: 949  SGSSNHF----------KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
            + SS+            KR+PIIAMTANALSESA+EC+ANGMDSFVSKPVTFQKL +CL+
Sbjct: 949  TCSSDSLPNGHDSMTVTKRVPIIAMTANALSESADECYANGMDSFVSKPVTFQKLTQCLQ 1008

Query: 999  QYF 1001
            QY 
Sbjct: 1009 QYL 1011


>gi|224143389|ref|XP_002324940.1| histidine kinase cytokinin receptor [Populus trichocarpa]
 gi|222866374|gb|EEF03505.1| histidine kinase cytokinin receptor [Populus trichocarpa]
          Length = 945

 Score = 1376 bits (3561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 719/1020 (70%), Positives = 809/1020 (79%), Gaps = 98/1020 (9%)

Query: 5    METDLIEDMDIEGLPSMWPEDIGSDKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLEL 64
            ME + +EDMDIE LPSMWPEDI S K + VE+P G QDMLEEVTI E+ TIVDF  L+EL
Sbjct: 1    MENEQMEDMDIEALPSMWPEDIDSSKPY-VEKPVGDQDMLEEVTIVEEPTIVDFHHLVEL 59

Query: 65   TNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEG 124
            TNYTD+GSSQ+ +LV+HWEY+ +NAVRLLREELD LS+QR+E ELKKLEILE+ RFEEE 
Sbjct: 60   TNYTDRGSSQLTHLVQHWEYKHANAVRLLREELDILSKQREEVELKKLEILEDFRFEEER 119

Query: 125  YGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKMLEA 184
            Y GDKRPISI+DE+ D+++D+  RK D++ QSK+V +DAE++TV YWKQRA DLEK+LEA
Sbjct: 120  YSGDKRPISILDEIIDLYQDIPRRKRDIIVQSKKVNIDAEFETVAYWKQRAKDLEKLLEA 179

Query: 185  SGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRY 244
            S  REQ LMEKL ES+ NLEKQSSPVEEL+QILKRADNFLHFVLQNAPVV+GHQDK+LRY
Sbjct: 180  SVHREQLLMEKLQESLQNLEKQSSPVEELTQILKRADNFLHFVLQNAPVVIGHQDKDLRY 239

Query: 245  RFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSK 304
            RFIYN FP L EE+ILGKTDVEIFSG+GVKESQDFK+EVL+KGLPAKREITFETELFGSK
Sbjct: 240  RFIYNQFPRLQEEEILGKTDVEIFSGSGVKESQDFKKEVLDKGLPAKREITFETELFGSK 299

Query: 305  TFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT 364
            TFLIYVEPVFSKSGETIG+NYMGMDVTDQVRKREKMA+LRE+IAVQKAKETELNKTIHIT
Sbjct: 300  TFLIYVEPVFSKSGETIGINYMGMDVTDQVRKREKMAQLREQIAVQKAKETELNKTIHIT 359

Query: 365  EETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIND 424
            EETMRAKQMLATMSHEIRSPL+GVVSMAEILS T LDREQRQLL VMISSGDLVLQLIND
Sbjct: 360  EETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTNLDREQRQLLNVMISSGDLVLQLIND 419

Query: 425  ILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLR 484
            ILDLSKVESGVMKLEA KFRPREVVKHVLQTAAASLQKIL LEG +ADDVPIEVIGDVLR
Sbjct: 420  ILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGRVADDVPIEVIGDVLR 479

Query: 485  IRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPK 544
            IRQILTNLI+NAIKFT EGKVGI LYVV +P             +++      +E  +P+
Sbjct: 480  IRQILTNLITNAIKFTHEGKVGINLYVVSDP-------------FKNGNTTDGDEGEEPQ 526

Query: 545  SQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIP 604
                                       PGT              TVW+ CDVYDTGIGIP
Sbjct: 527  V--------------------------PGT--------------TVWLCCDVYDTGIGIP 546

Query: 605  -------------------ENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
                               ENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG
Sbjct: 547  GTLVSIVEALLSTFLIHATENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 606

Query: 646  RLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTL 705
            RLTV+SKV  GSTFTF+LPY+VS   ++SDDPDDLS+MAD ++  +D TAGFFQFQPRTL
Sbjct: 607  RLTVSSKVKSGSTFTFVLPYKVSSTCDSSDDPDDLSEMADHEAPLEDETAGFFQFQPRTL 666

Query: 706  GSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNN-RQKETAPLEDACSVAEV 764
            GSLFSSNG++R++KLLP+SIGF  + K+NG SE S SFPS N R KET  +EDACS+ EV
Sbjct: 667  GSLFSSNGSTRTQKLLPHSIGFTKSPKINGISEDSCSFPSGNVRLKETTCVEDACSMVEV 726

Query: 765  AETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKT 824
            AETLSEPESSFSHSPE + E  V R +Q   +T    +                   + T
Sbjct: 727  AETLSEPESSFSHSPERDYENVVCRSQQSQDDTNLSLR-------------------ANT 767

Query: 825  NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
             EP   C+ +EK    SQ  SSS  + PE+  KPKPKILLVEDNKINVMV KSMMKQLGH
Sbjct: 768  AEPPGSCQEEEKSVINSQCTSSSIPQKPES--KPKPKILLVEDNKINVMVTKSMMKQLGH 825

Query: 885  SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIE- 943
            ++DVVNNGVEAV AVQ   YDL+LMDVCMPVM+GL+AT+LIRSFE+TGNWDAAA+AGIE 
Sbjct: 826  TMDVVNNGVEAVRAVQSCCYDLVLMDVCMPVMNGLQATQLIRSFEETGNWDAAAKAGIEP 885

Query: 944  -QAMPSSGSSNHF-KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
              ++  S SS H+ KR+PIIAMTANALSESAEEC+ANGMDSFVSKPVTFQKLKECLEQY 
Sbjct: 886  SASLQDSQSSIHYDKRMPIIAMTANALSESAEECYANGMDSFVSKPVTFQKLKECLEQYL 945


>gi|147778679|emb|CAN76109.1| hypothetical protein VITISV_033090 [Vitis vinifera]
          Length = 979

 Score = 1366 bits (3535), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 711/1020 (69%), Positives = 813/1020 (79%), Gaps = 65/1020 (6%)

Query: 5    METDLIEDMDIEGLPSMWPEDIGSD--KQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLL 62
            ME D IE+MD+E L SMWPEDIG+D   QFN++RPG  QDMLEEV I E+ +IVDFKRLL
Sbjct: 1    MENDNIEEMDVEVLHSMWPEDIGNDAGNQFNMDRPGADQDMLEEVNIVEEPSIVDFKRLL 60

Query: 63   ELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEE 122
            ELTNY++KGSSQ+AYLVK+WEY+Q+NAVRLL+EELDNLSRQRQE ELKKLEILEEHRF E
Sbjct: 61   ELTNYSEKGSSQLAYLVKNWEYKQANAVRLLKEELDNLSRQRQEVELKKLEILEEHRFVE 120

Query: 123  EGYGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKML 182
            E YGGDKRPISI+D + D+W++V  R+N VV Q+KR+E+DAEYDTV YWKQRA+ LEK+L
Sbjct: 121  ERYGGDKRPISILDGIYDIWQEVPRRRNSVVVQNKRLEIDAEYDTVIYWKQRAVHLEKLL 180

Query: 183  EASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKEL 242
            EAS QRE  LMEK+ ES+ +LE+QSSPVEELSQILKRADNFLHFVLQNAPVV+GHQDKEL
Sbjct: 181  EASVQREHMLMEKVQESIKSLERQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKEL 240

Query: 243  RYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKG-LPAKREITFETELF 301
            RYRFIYNHFPSL EEDI+GKTDVEIF+GAGVKESQ+FK+EVLE+G L AKREITFETELF
Sbjct: 241  RYRFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKKEVLERGLLSAKREITFETELF 300

Query: 302  GSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTI 361
            GSKTFLIYVEPVFSK+G+TIGVNYMGMDVTDQVRKREKM K+REEIAVQKAKETELNKTI
Sbjct: 301  GSKTFLIYVEPVFSKAGDTIGVNYMGMDVTDQVRKREKMMKIREEIAVQKAKETELNKTI 360

Query: 362  HITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQL 421
            HITEETMRAKQMLATMSHEIRSPL+GVVS+AEIL+ T LDR QRQLL VM+SSGDLVLQL
Sbjct: 361  HITEETMRAKQMLATMSHEIRSPLSGVVSIAEILATTNLDRHQRQLLNVMLSSGDLVLQL 420

Query: 422  INDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGD 481
            INDILDLSKVESGVMKLEA KFRPREV                               GD
Sbjct: 421  INDILDLSKVESGVMKLEATKFRPREVT------------------------------GD 450

Query: 482  VLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAK-EGLKQKSKAYQSATDA--VKE 538
            VLRIRQILTNLISNA+KFT EGKVGI LYV+PEP     EG  Q     QS   A   KE
Sbjct: 451  VLRIRQILTNLISNAVKFTHEGKVGINLYVIPEPSSGNGEGCPQMFIDDQSTVSANIPKE 510

Query: 539  EKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDED------LEATVWI 592
            +K    SQ++    G H        Q+H  +D+P  P++H +S  ED      LE TVWI
Sbjct: 511  QKCLSPSQSSCTSKGSH-------TQNHALNDEPIDPINHDDSKQEDKENSHPLETTVWI 563

Query: 593  RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
            RCDVYDTGIGIPE+ALPTLF+KYMQVSADHARKYGGTGLGLAICKQLVELMGG +TV+S+
Sbjct: 564  RCDVYDTGIGIPEHALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGHMTVSSR 623

Query: 653  VHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSN 712
             H GSTFTFILPY+VS I ++SDDPD+LSDMAD D+ TDD  AGFFQF PRTLGSLFSS 
Sbjct: 624  EHSGSTFTFILPYKVSLISDHSDDPDELSDMADDDASTDDKNAGFFQFHPRTLGSLFSSG 683

Query: 713  GTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNN-RQKETAPLEDACSVAEVAETLSEP 771
            G+ R++KL PN+IG+ S HK+NG S+ SYSFP N    KE   LEDACSV + AETLSEP
Sbjct: 684  GSGRTQKLPPNNIGYDSLHKLNGLSDDSYSFPFNKVTSKEMTSLEDACSVVDAAETLSEP 743

Query: 772  ESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKIC 831
            ES   H+ EP+N+  VSRGK+C  E      N +  ST HS+ ++E+ +  KT+E  ++C
Sbjct: 744  ESLLRHNAEPDNDNAVSRGKKCQDEANGQVHNHSXGSTHHSKVSKEVDEMGKTSEAPEMC 803

Query: 832  EMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNN 891
               E  +R SQ  SSSS E    K   KPKILLVED+KINVMV +SMMKQLGH+IDVVNN
Sbjct: 804  LRLEISERSSQCTSSSSPE--XPKSTLKPKILLVEDSKINVMVTQSMMKQLGHTIDVVNN 861

Query: 892  GVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951
            G+EAV AVQC++YDLILMDVCMPVMDGL+ATR+IRSFE+TGNWDAA +AGIE   PS+ S
Sbjct: 862  GIEAVRAVQCRSYDLILMDVCMPVMDGLQATRIIRSFEETGNWDAAVKAGIE---PSTCS 918

Query: 952  SNHF----------KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            S+            KR+PIIAMTANALSESA+EC+ANGMDSFVSKPVTFQKL +CL+QY 
Sbjct: 919  SDSLPNGHDSMXVTKRVPIIAMTANALSESADECYANGMDSFVSKPVTFQKLTQCLQQYL 978


>gi|356552435|ref|XP_003544573.1| PREDICTED: histidine kinase 5-like [Glycine max]
          Length = 937

 Score = 1357 bits (3511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/1009 (69%), Positives = 797/1009 (78%), Gaps = 85/1009 (8%)

Query: 5    METDLIEDMDIEGLPSMWPEDIGSD--KQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLL 62
            ME+D IEDMDIE L SMWPEDIG+D  KQFN+E+PG  QDMLEEVTI E+ TI DF+RL+
Sbjct: 1    MESDCIEDMDIEVLSSMWPEDIGTDVGKQFNIEKPGRDQDMLEEVTIIEEPTIADFQRLM 60

Query: 63   ELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEE 122
            ELTNYTDKGSSQ+AYL+KHWEY+Q+NAVRLLREELDNLS+QR+E EL+KLEIL++ RFEE
Sbjct: 61   ELTNYTDKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQRKEVELRKLEILKDTRFEE 120

Query: 123  EGYGGDKRPISIMDELSDMWKDV-CP-RKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEK 180
            E YGGDKRP+SI+DE+   W+DV  P RK+++V Q+KR+E+DAEYDTV YWKQRAL LE+
Sbjct: 121  ENYGGDKRPVSILDEVYYTWQDVPVPLRKSNIVVQTKRIEIDAEYDTVVYWKQRALQLER 180

Query: 181  MLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDK 240
             LEAS QREQ LM+KL ESV NLE+QSSPVEELSQILKRADNFLHF+LQNAPVV+GHQDK
Sbjct: 181  QLEASVQREQILMDKLEESVKNLERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDK 240

Query: 241  ELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETEL 300
            ELRYRFIYNHFPSL EEDI+GKTDVEIF+G+GVKESQDFKREV+EKGLPAK+EITFETEL
Sbjct: 241  ELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETEL 300

Query: 301  FGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKT 360
            FGSKTFLIYVEPVFSK+GETIGVNYMGM++TDQVRKRE+MAKLREEIAVQKAKETELNKT
Sbjct: 301  FGSKTFLIYVEPVFSKAGETIGVNYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKT 360

Query: 361  IHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQ 420
            IHITEETMRAKQMLATMSHEIRSPL+GVVSMAEILS TKLDREQRQLL VMISSGDLVLQ
Sbjct: 361  IHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLNVMISSGDLVLQ 420

Query: 421  LINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIG 480
            LINDILDLSKVESGVMKLEA KFRPREVVKHVLQTAAASLQK+L LEG++ADD+PIEVIG
Sbjct: 421  LINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDMPIEVIG 480

Query: 481  DVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEK 540
            DVLRIRQILTNL+SNA+KFT EGKVGI LYVVPEPPFAK    QK    QS+  +     
Sbjct: 481  DVLRIRQILTNLVSNAVKFTHEGKVGINLYVVPEPPFAKAEGHQKMITEQSSVKSECSMN 540

Query: 541  HQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTG 600
               + QT S +                                     TVWIRCDVYDTG
Sbjct: 541  GDTEEQTHSTE-------------------------------------TVWIRCDVYDTG 563

Query: 601  IGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFT 660
            IGIPE A+PTLFR+YMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK H GSTFT
Sbjct: 564  IGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHVGSTFT 623

Query: 661  FILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKL 720
            FILPY+VS   ++SDDPD+LSD+ D D  T   T GFFQFQPRTLGSLF+SNG +R + +
Sbjct: 624  FILPYKVSTACDDSDDPDELSDVDDNDDDT---TEGFFQFQPRTLGSLFTSNGPTRPQNI 680

Query: 721  LPNSIGFASAHKVNGFSETSYSF-PSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSP 779
            LP   GF S+HK NG SE SYSF  +N R K  +  ED  SV                  
Sbjct: 681  LP---GFRSSHKFNGISENSYSFLTTNTRSKGISSTEDQESVINT--------------- 722

Query: 780  EPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQT--SKTNEPQKICEMQE-- 835
               NE +     + H       QN + +S+ H E    M+ T  + +NEPQ+ C++    
Sbjct: 723  --NNENQ----DKAHAR----LQNGSVDSSQHKEV---MVMTLGTMSNEPQQTCQLVNTD 769

Query: 836  -KPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
                R+  S +++ +EV  TK    PKILLVEDNKINVMV +SMMK+LG+S+DVVNNGVE
Sbjct: 770  ITSQRVISSNNNTLSEV--TKSSLGPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVE 827

Query: 895  AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG--SS 952
            AV AVQ   YD+ILMDV MPVM+GL+ T+LIRS+EDTGNW+AA +AGIEQ +P+S   S 
Sbjct: 828  AVRAVQHHTYDIILMDVYMPVMNGLQTTKLIRSYEDTGNWEAARKAGIEQCLPASNECSV 887

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                RI IIAMTAN +SESAEEC+ANGMDSFVSKPVTFQKLK+CLEQY 
Sbjct: 888  PPKNRIHIIAMTANTMSESAEECYANGMDSFVSKPVTFQKLKDCLEQYL 936


>gi|255548630|ref|XP_002515371.1| sensor histidine kinase, putative [Ricinus communis]
 gi|223545315|gb|EEF46820.1| sensor histidine kinase, putative [Ricinus communis]
          Length = 930

 Score = 1351 bits (3497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 691/968 (71%), Positives = 777/968 (80%), Gaps = 68/968 (7%)

Query: 4   NMETDLIEDMDIEGLPSMWPEDIGSDKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLE 63
           N +T+ IEDMDIE +PSMWPEDI S+K +NVE+P G QDMLEEVTI E+ +IVDF RL+E
Sbjct: 3   NDQTEQIEDMDIEVVPSMWPEDIDSEKPYNVEKPRGDQDMLEEVTIVEEPSIVDFHRLIE 62

Query: 64  LTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEE 123
           LTNYTD+GSSQ+AYLVKHWEY+Q NAVRLL+EELD LS+QRQE ELKKLEILE+ RFEEE
Sbjct: 63  LTNYTDRGSSQLAYLVKHWEYQQINAVRLLKEELDILSQQRQEVELKKLEILEDFRFEEE 122

Query: 124 GYGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKMLE 183
           GYG DKRPISI+DE+ D+++ +  RK DV  Q+KRV VDAEYDTV YWKQR +DLEK+LE
Sbjct: 123 GYGSDKRPISILDEVIDLYQVLPIRKKDVTVQNKRVVVDAEYDTVAYWKQRTMDLEKLLE 182

Query: 184 ASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELR 243
           AS QREQ L+EKL ES+ +LE+QSSPVEELSQILKRADNFLHF+LQNAPVVMGHQDKELR
Sbjct: 183 ASIQREQVLIEKLQESIKDLERQSSPVEELSQILKRADNFLHFILQNAPVVMGHQDKELR 242

Query: 244 YRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGS 303
           YRFIYNHFP L EEDILGKTD+EIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGS
Sbjct: 243 YRFIYNHFPRLGEEDILGKTDMEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGS 302

Query: 304 KTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHI 363
           KTFLIYVEPVFSKSG TIG+NYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHI
Sbjct: 303 KTFLIYVEPVFSKSGVTIGINYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHI 362

Query: 364 TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           TEETMRAKQMLATMSHEIRSPL+GVVSMAEILS T LDREQRQLL VMISSGDLVLQLIN
Sbjct: 363 TEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTNLDREQRQLLNVMISSGDLVLQLIN 422

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVL 483
           DILDLSKVESGVMKLEA KFRPREVVKHVLQTAAASL+K L+LEG +ADDVPIEVIGDVL
Sbjct: 423 DILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLKKFLILEGCVADDVPIEVIGDVL 482

Query: 484 RIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAK-EGLKQKSKAYQSATDAVKEEKHQ 542
           RIRQILTNLISNAIKFT EGKVGI LYVV +P F K +G  QKS A           K +
Sbjct: 483 RIRQILTNLISNAIKFTHEGKVGINLYVVADPCFGKADGNHQKSSA-----------KEE 531

Query: 543 PKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIG 602
            +SQ                                        E  VW+RCDVYDTGIG
Sbjct: 532 AQSQ----------------------------------------ETLVWLRCDVYDTGIG 551

Query: 603 IPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFI 662
           IPENALPTLF+KYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV+S+V+CGSTFTFI
Sbjct: 552 IPENALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSRVNCGSTFTFI 611

Query: 663 LPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLP 722
           LPY+VS + ++SDD ++LS+MAD D+ T+D TAGFF FQP TLGS FSSNG++R++K+ P
Sbjct: 612 LPYKVSSMCDSSDDAEELSEMADHDAGTEDETAGFFSFQPLTLGSPFSSNGSTRTQKIFP 671

Query: 723 NSIGFASAHKVNGFSETSYSFPSNN-RQKETAPLEDACSVAEVAETLSEPESSFSHSPEP 781
           +     ++HK+NG S+  YSFPS+N R KETA +EDACS  EVA+TLSEPESS+SHSPEP
Sbjct: 672 H-----NSHKLNGLSDNLYSFPSSNVRLKETASVEDACSTVEVADTLSEPESSYSHSPEP 726

Query: 782 ENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRIS 841
           +NE    R KQ   + +S   N    ST H E  RE+   +   EPQ  C  QEK D  S
Sbjct: 727 DNENVACRSKQFQ-DDSSQLHNCTMVSTCHVEPCREVDAQAIEREPQGSCFAQEKSDISS 785

Query: 842 QSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
           Q     S +VP +  K +PKILLVEDN +NVMV +SMMKQLGH+IDVVNNG+EAV AVQ 
Sbjct: 786 QPTCGRSPQVPMS--KLQPKILLVEDNNVNVMVTRSMMKQLGHTIDVVNNGIEAVRAVQG 843

Query: 902 QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMP-------SSGSSNH 954
             YDL+LMDVCMPVMDGL+ATRLIRSFE+TG+WDAA +AGIE + P       S G    
Sbjct: 844 NCYDLVLMDVCMPVMDGLQATRLIRSFEETGSWDAATKAGIELSAPFSSSLPDSPGCMPS 903

Query: 955 FKRIPIIA 962
            +R PIIA
Sbjct: 904 TRRTPIIA 911


>gi|224092694|ref|XP_002309700.1| histidine kinase cytokinin receptor [Populus trichocarpa]
 gi|222855676|gb|EEE93223.1| histidine kinase cytokinin receptor [Populus trichocarpa]
          Length = 923

 Score = 1347 bits (3487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 702/1012 (69%), Positives = 793/1012 (78%), Gaps = 103/1012 (10%)

Query: 5    METDLIEDMDIEGLPSMWPEDIGSDKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLEL 64
            ME D +EDMDIE L SMWPEDI S K + VE+P G QDMLEEVTI E  TIVDF  L+EL
Sbjct: 1    MENDQMEDMDIEALSSMWPEDIDSSKPY-VEKPVGDQDMLEEVTIVEGPTIVDFHHLVEL 59

Query: 65   TNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEG 124
            TNYTD+GSSQ+A+LV+HWEY+Q+NAVRLLREELD L++QR+E ELKKLEILE+ RFEEE 
Sbjct: 60   TNYTDRGSSQLAHLVQHWEYKQANAVRLLREELDILNKQREEVELKKLEILEDFRFEEER 119

Query: 125  YGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKMLEA 184
            Y GDKR ISI+DE+ D+++D+  RK+D++ QSKRV++DAE+DTV YWKQR + LEK+LEA
Sbjct: 120  YSGDKRQISILDEIFDIYQDIPRRKSDIIVQSKRVDIDAEFDTVAYWKQRVVHLEKLLEA 179

Query: 185  SGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRY 244
            S  RE+ L EKL ES+ NLEKQSSPVEEL+QILKRADNFLHFVLQNAPVV+GHQDK+LRY
Sbjct: 180  SVHREELLTEKLQESIQNLEKQSSPVEELTQILKRADNFLHFVLQNAPVVIGHQDKDLRY 239

Query: 245  RFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSK 304
            RFIYNHFP L EE+I+GKTDVEIFSGAGVKESQDFK+EVL+KGLPAKREITFETELFGSK
Sbjct: 240  RFIYNHFPRLQEEEIIGKTDVEIFSGAGVKESQDFKKEVLDKGLPAKREITFETELFGSK 299

Query: 305  TFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT 364
            TFLIYVEPVFSKSGETIG+NYMGMDVTDQVRKREKMA+LREEIAVQKAKETELNKTIHIT
Sbjct: 300  TFLIYVEPVFSKSGETIGINYMGMDVTDQVRKREKMARLREEIAVQKAKETELNKTIHIT 359

Query: 365  EETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIND 424
            EETMRAKQMLATMSHEIRSPL+GVVSMAEILS T LDREQRQLL VMISSGDLVLQLIND
Sbjct: 360  EETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTNLDREQRQLLNVMISSGDLVLQLIND 419

Query: 425  ILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLR 484
            ILDLSKVESGVMKLEA KFRPREVVKHVLQTAAASLQKIL LEG +ADDVPIEVIGDVLR
Sbjct: 420  ILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGRVADDVPIEVIGDVLR 479

Query: 485  IRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPK 544
            IRQILTNLISNAIKFT EGKVGIKLYVV +P + K                  E KHQ  
Sbjct: 480  IRQILTNLISNAIKFTHEGKVGIKLYVVSDPCYGK-----------------AERKHQ-- 520

Query: 545  SQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDL-------EATVWIRCDVY 597
                                    +++P TPV +GN+MD D          TVW+ CDVY
Sbjct: 521  ------------------------NNEPQTPVKNGNTMDGDKGEEPEVPGTTVWLCCDVY 556

Query: 598  DTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGS 657
            DTGIGIP+NALPTLF+KYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV+SKV CGS
Sbjct: 557  DTGIGIPDNALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKVKCGS 616

Query: 658  TFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRS 717
            TFTF+LPY+VS   ++SDDPDDLS+MAD D+  +D TAGFFQFQPRTLGSLFSSNG++R+
Sbjct: 617  TFTFVLPYKVSSTCDSSDDPDDLSEMADHDAPLEDETAGFFQFQPRTLGSLFSSNGSTRT 676

Query: 718  KKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSH 777
            +KLLP+SIGF+++  +NGFSE S+SFPS+                               
Sbjct: 677  QKLLPHSIGFSNSPILNGFSEDSFSFPSDR------------------------------ 706

Query: 778  SPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKP 837
                +NE  V R KQC  ET S   N      +H E          + +P   C+ QEK 
Sbjct: 707  ----DNENVVCRRKQCLDETKSKIPNGTKNCNNHKEV---------SGDPPGSCQEQEKS 753

Query: 838  DRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
               SQ  SSS  + PE+  KPKPKILLVEDNKINVMV KSMMKQLGH++DVVNNGVEAV 
Sbjct: 754  ATSSQCTSSSIPQEPES--KPKPKILLVEDNKINVMVTKSMMKQLGHTMDVVNNGVEAVR 811

Query: 898  AVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR 957
            AVQ  +YDLILMDVCMPVM+GL+AT+LIRSFE+TGNWDAA +AGIE +M     ++ F  
Sbjct: 812  AVQSCSYDLILMDVCMPVMNGLQATQLIRSFEETGNWDAAIKAGIEPSMCLGFYTSRFTP 871

Query: 958  IP-------IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             P        + MTANALSESAEEC+ANGMDSFVSKPVTFQK+KECLEQY P
Sbjct: 872  EPPKDVLFSSVRMTANALSESAEECYANGMDSFVSKPVTFQKIKECLEQYLP 923


>gi|356509864|ref|XP_003523664.1| PREDICTED: histidine kinase 5-like [Glycine max]
          Length = 933

 Score = 1324 bits (3427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 690/1009 (68%), Positives = 783/1009 (77%), Gaps = 88/1009 (8%)

Query: 1    MVCNMETDLIEDMDIEGLPSMWPEDIGSD--KQFNVERPGGGQDMLEEVTIPEDQTIVDF 58
            M+  ME D I+DMDIE +PSMWPEDIG +  KQFN+E+PG  QDMLEEVTI E+ TIVDF
Sbjct: 1    MLLEMENDCIKDMDIEVVPSMWPEDIGMEVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDF 60

Query: 59   KRLLELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEH 118
            KRL+ELTN+T+KGSSQ+AYL+K WEY+Q+N VRLLREELDNLS+QRQ+ EL+KLEILEEH
Sbjct: 61   KRLMELTNFTEKGSSQLAYLMKQWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEH 120

Query: 119  RFEEEGYGGDKRPISIMDELSD-MWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALD 177
            RFEEE +G DKRP+SI+D++ D +W+D+  R++DVV ++KR E+DAEYDTV  WKQRAL 
Sbjct: 121  RFEEERHGADKRPVSILDDVYDGIWQDIPCRRSDVVVENKRSEIDAEYDTVMCWKQRALH 180

Query: 178  LEKMLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGH 237
             EK LEAS QREQ L EKL E + N+E+QSSPVEELSQILKRADNFLHF+LQNAP+V+GH
Sbjct: 181  SEKQLEASIQREQILEEKLQERIANIERQSSPVEELSQILKRADNFLHFILQNAPIVIGH 240

Query: 238  QDKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFE 297
            QDKELRY FIYNHFPSL EEDI+GKTDVEIF+GAGVKE+Q+FKREVLEKGLPAKREITFE
Sbjct: 241  QDKELRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKEAQEFKREVLEKGLPAKREITFE 300

Query: 298  TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETEL 357
            TELFGSKTFLIYVEPVFSK+GETIG+NYMGMD+TDQVRKRE+MAK+REEIAVQKAKETEL
Sbjct: 301  TELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETEL 360

Query: 358  NKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDL 417
            NKTIHITEETMRAKQMLATMSHEIRSPL+GVVSMAEILSNTKLD EQRQLL VM+SSGDL
Sbjct: 361  NKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSNTKLDWEQRQLLDVMLSSGDL 420

Query: 418  VLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIE 477
            VLQLINDILDLSKVESGVMKLEA KFRPREVV+HVLQ AAASLQKIL LEG +ADDVPIE
Sbjct: 421  VLQLINDILDLSKVESGVMKLEATKFRPREVVRHVLQIAAASLQKILTLEGHVADDVPIE 480

Query: 478  VIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVK 537
            VIGDVLR+RQILTNLISNAIKFT EGKVGI LYVV EP FAK    QK  +  S      
Sbjct: 481  VIGDVLRMRQILTNLISNAIKFTHEGKVGINLYVVSEPTFAKAECIQKMTSSHSTI---- 536

Query: 538  EEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVY 597
                QP S                                         E TVWIRCDVY
Sbjct: 537  --SEQPNSA----------------------------------------ETTVWIRCDVY 554

Query: 598  DTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGS 657
            DTGIGIPE+A+PTLF++YMQVSADH RKYGGTGLGLAICKQLVELMGG+LTV+SK H GS
Sbjct: 555  DTGIGIPEDAIPTLFKRYMQVSADHTRKYGGTGLGLAICKQLVELMGGQLTVSSKEHYGS 614

Query: 658  TFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRS 717
            TFTFILPY+VS   ++SDD D+LSD+ + D+ +DD    FFQFQPRTLGSLFSSNG+SR+
Sbjct: 615  TFTFILPYKVSIACDHSDDLDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGSSRT 674

Query: 718  KKLLPNSIGFASAHKVNGFSETSYSFPSNN-RQKETAPLEDACSVAEVAETLSEPESSFS 776
             KLL + IG+ S+HK+ GFSE+ YSFPSN+   K T   +DA SV EV            
Sbjct: 675  HKLLTHKIGYTSSHKLGGFSESLYSFPSNDIMSKGTCSADDASSVVEV------------ 722

Query: 777  HSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEK 836
              PE       S   Q                   +++N EM +       Q  C+   K
Sbjct: 723  --PEMSESASSSGHSQ------------------KTKSNGEMSEAKSNELQQTTCQGHGK 762

Query: 837  PDRISQSPSSSS-AEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA 895
             +   Q  ++SS +EV  TK    PKILLVEDNKINVMV +SMMKQLGHSIDVVNNGVEA
Sbjct: 763  TNTTFQCVTNSSVSEV--TKSTIIPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEA 820

Query: 896  VHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMP---SSGSS 952
            V AVQ   YDLILMDVCMPVM+GL+AT+LIR+FE+TGNWDAA  AGIEQ++       S 
Sbjct: 821  VRAVQRHTYDLILMDVCMPVMNGLQATKLIRTFEETGNWDAARNAGIEQSVQDPDCECSV 880

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
               KRIPI+AMTANALSESAEECFANGMDSFVSKPV FQKLKEC+EQY 
Sbjct: 881  PSTKRIPIVAMTANALSESAEECFANGMDSFVSKPVAFQKLKECIEQYL 929


>gi|357437045|ref|XP_003588798.1| Histidine kinase cytokinin receptor [Medicago truncatula]
 gi|355477846|gb|AES59049.1| Histidine kinase cytokinin receptor [Medicago truncatula]
          Length = 1077

 Score = 1323 bits (3424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 706/1092 (64%), Positives = 827/1092 (75%), Gaps = 107/1092 (9%)

Query: 1    MVCNMETDLIEDM-DIEGLPSMWPEDIGSD--KQFNVERPGGGQDMLEEVTIPEDQTIVD 57
            MVC ME+D IEDM DIE L SMWPED+G+D  KQFN+E+PG  QDMLEEVTI E+  I D
Sbjct: 1    MVCEMESDCIEDMMDIEELSSMWPEDVGTDVGKQFNIEKPGRDQDMLEEVTILEEPAIAD 60

Query: 58   FKRLLELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEE 117
            F+RL+ELTNYTDKGSSQ+AYL++HWEY+Q+NAVRLLREELDNLS+QR+E E +KLEIL+E
Sbjct: 61   FQRLMELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVEQRKLEILKE 120

Query: 118  H-RFEEE-GYGGDKRPISIMDELSDMWKDV--CPRKNDVVFQSKRVEVDAEYDTVEYWKQ 173
            + RFEEE  YGGDKRP+SI+D+    W+D+    RK+D+V Q+KR+E++AEYDTV YWKQ
Sbjct: 121  NNRFEEEISYGGDKRPVSILDDAYYTWQDLPAAIRKSDIVVQNKRIEIEAEYDTVVYWKQ 180

Query: 174  RALDLEKMLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPV 233
            R+ D EK LEAS +RE  L EKL ES+  +E+QSSPVEELSQILKRADNFLHF+LQNAPV
Sbjct: 181  RSQDFEKQLEASIRREDILKEKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPV 240

Query: 234  VMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKRE 293
            V+GHQDKELRYRFIYNHFPSL EEDI+GKTDVEIF+GAGVKESQDFKREV+EKG+PAK+E
Sbjct: 241  VIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQDFKREVMEKGVPAKKE 300

Query: 294  ITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTD--------------------- 332
            ITFETELFG KTFLIYVEPVFSK+GETIGVNYMGM++TD                     
Sbjct: 301  ITFETELFGFKTFLIYVEPVFSKAGETIGVNYMGMEITDQVNIVILVVFKVLNCSIVLVK 360

Query: 333  ---------QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRS 383
                     QVRKRE+MAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRS
Sbjct: 361  KIFIISKKSQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRS 420

Query: 384  PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
            PL+GVVSMAEIL+ TKLD+EQRQLL VM+SSGDLVLQLINDILDLSKVESG MKLEA KF
Sbjct: 421  PLSGVVSMAEILTTTKLDKEQRQLLDVMLSSGDLVLQLINDILDLSKVESGAMKLEATKF 480

Query: 444  RPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
            RPREVV+HVLQTAAA LQK+L LEG++ADD+PIEV GDVLRIRQILTNL+SNA+KFT +G
Sbjct: 481  RPREVVRHVLQTAAAPLQKMLTLEGNVADDIPIEVTGDVLRIRQILTNLVSNAVKFTHQG 540

Query: 504  KVGIKLYVVPEPPFAK-EGLKQKSKAYQSATDA--VKEEKHQPKSQTA-SDQNGFHDKKH 559
            KVGI LYVVPEP FAK E   QK    QS   A  +KE+KH P  ++   DQN   D+KH
Sbjct: 541  KVGINLYVVPEPAFAKEEESHQKVTEDQSTISANGLKEDKHTPSPRSMRCDQNLIDDRKH 600

Query: 560  GEG-YQDHKHDDDPGTPVSHGNSMDED--------LEATVWIRCDVYDTGIGIPENALPT 610
             +   Q+H   ++  + V+   SM++D        +E TVWIRCDVYDTGIGIPE A+PT
Sbjct: 601  ADHPIQNHAFSNECRSSVNSECSMNDDDTEEQTHSIETTVWIRCDVYDTGIGIPEKAIPT 660

Query: 611  LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
            LFR+YMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK HCGSTFTFILPY+VS  
Sbjct: 661  LFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHCGSTFTFILPYKVSTA 720

Query: 671  EENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASA 730
             ENSDDPDDLSD+ + +   DD T GFFQFQPRTLGSLF+SNG++R  ++         +
Sbjct: 721  CENSDDPDDLSDVDNNE---DDTTEGFFQFQPRTLGSLFTSNGSTRPHRI---------S 768

Query: 731  HKVNGFSET-SYSFPSNN-RQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVS 788
            HK NGF +  SYS  S+N     T  +EDA SV   A  +SE  +SFSHS E ++E+  +
Sbjct: 769  HKFNGFPDNDSYSNHSSNIISNGTNSIEDASSVIVDASDMSESTNSFSHSLETKHESLCN 828

Query: 789  RGKQCHVETTSW--FQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSS 846
              KQ H    +    QN +  S    EA+REM   +K+NEPQ+ C+ Q K D  + + +S
Sbjct: 829  GNKQNHDNNKAHDRLQNGSANSIHWKEASREMNLETKSNEPQQTCQGQGKEDSTTSNSTS 888

Query: 847  SSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDL 906
            S      TK   KP ILLVEDNKIN+MV KSMMKQLG+S+DVVNNGVEA+ AVQ  +YD+
Sbjct: 889  SEV----TKSTLKPNILLVEDNKINIMVTKSMMKQLGYSMDVVNNGVEAIRAVQSHSYDI 944

Query: 907  ILM-----------------------------------DVCMPVMDGLKATRLIRSFEDT 931
            ILM                                   DV MPVM+GL+ T+LIRS+E+T
Sbjct: 945  ILMVISSILNCIFHFVAFSYNSHIMGFYELRFDTFTLQDVYMPVMNGLQTTKLIRSYEET 1004

Query: 932  GNWDAAAEAGIEQAMPSSG--SSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVT 989
            GNWDAA EAG+EQ++ +S   S    KRI I+AMTAN +SESAEECFANGMD+FVSKPVT
Sbjct: 1005 GNWDAAREAGVEQSLSASDECSVPPKKRIHIVAMTANTMSESAEECFANGMDAFVSKPVT 1064

Query: 990  FQKLKECLEQYF 1001
            F KLKECLE+Y 
Sbjct: 1065 FLKLKECLEKYL 1076


>gi|449447373|ref|XP_004141443.1| PREDICTED: histidine kinase 5-like [Cucumis sativus]
          Length = 941

 Score = 1246 bits (3225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1016 (64%), Positives = 763/1016 (75%), Gaps = 97/1016 (9%)

Query: 5    METDLIEDMDIEGLPSMWPEDIGSD--KQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLL 62
            ME  +IEDMDIE +PSMWPED+G D  KQFNVERPG  QDMLEEV I E+ TIVDFKRL+
Sbjct: 1    MENGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLI 60

Query: 63   ELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEE 122
            ELTNYT+KGSSQ+ YL K WEY+Q+NAVRLL+EELD LS+QR+E ELKKL+ILEEH FEE
Sbjct: 61   ELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEE 120

Query: 123  EGYGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKML 182
            E Y GDKRPISI++E  D+W+D+  RK D VFQSKRVE+DAEYDTV YWKQRA+DLEK+L
Sbjct: 121  ERYAGDKRPISILEESCDIWQDIPRRKTDFVFQSKRVEIDAEYDTVTYWKQRAMDLEKLL 180

Query: 183  EASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKEL 242
            EAS QREQ L EKL E++ N+EKQSSPVEELSQILKRADNFLHFVLQNAPVV GHQDKEL
Sbjct: 181  EASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKEL 240

Query: 243  RYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFG 302
            RYRFIYNHFPSL EEDI+G+TDVEIFSGAGVKESQDFK+EVLEKGLPAKREI F+TELFG
Sbjct: 241  RYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFG 300

Query: 303  SKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
             KTFLIYVEPVFSK+GETIG+NYMGMD+TDQV+KREKMAKLREEIAVQKAKE+ELNKTIH
Sbjct: 301  LKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIH 360

Query: 363  ITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
            ITEETMRAKQMLATMSHEIRSPL+GVVSMAEILS TKLDREQR LL VM+SSGDLVLQLI
Sbjct: 361  ITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLI 420

Query: 423  NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDV 482
            NDILDLSKVESGVMKLEA KFRPREVVKHVLQTAAASL+K L+LEG IADDVPIEVIGDV
Sbjct: 421  NDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDV 480

Query: 483  LRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ 542
            LRIRQILTNLISNAIKFT +GKVGI LYV+P PP                          
Sbjct: 481  LRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPI------------------------- 515

Query: 543  PKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIG 602
                             G G + HK         S         E TVWIRCDVYDTGIG
Sbjct: 516  -----------------GTGEECHKKSTAENKSCSP--------ETTVWIRCDVYDTGIG 550

Query: 603  IPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFI 662
            IPENALPTLF++YMQ SADHARKYGGTGLGLAICKQLVELMGG LTV+S+ + GSTFTF+
Sbjct: 551  IPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFV 610

Query: 663  LPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLP 722
            LPY+VS    +    DD  +++D +S  D++T GFFQFQP +  +L SSNG++R    L 
Sbjct: 611  LPYKVS---SSCSPSDDSDEISDDESTNDEMTEGFFQFQPHSFSTLSSSNGSTRIPNSLL 667

Query: 723  NSIGFASAHKVNGFSE-TSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEP 781
            ++ G+ ++ K+NG +E   Y  P NN            + A+V  +     SS   +P  
Sbjct: 668  HTTGYPTSTKLNGLTEGVPYPIPLNN-----------IANADVVTSSKSQCSSSHVNPNL 716

Query: 782  ENETEVSRGKQCHVETTSWFQN-------PATESTSHSEANREMIQTSKTNEPQKICEMQ 834
            +N        Q   +T +  QN       P  E+T   +   +     ++N+ QK  + +
Sbjct: 717  DN--------QNQPDTNARLQNVGGVNSLPKLETTKLEDRLEK-----QSNKLQKTDQGK 763

Query: 835  EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            E+ +  +   +SSS   PE     +P+ILLVEDNK N+MV +SMMK+ G  IDVV NG+E
Sbjct: 764  ERSEASNHCRNSSSG--PEVTLALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIE 821

Query: 895  AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGI--------EQAM 946
            AV AVQ ++YDLILMDV MPVMDGL+ATRLIRSFE+TG+W+AA  AGI            
Sbjct: 822  AVRAVQRRSYDLILMDVFMPVMDGLEATRLIRSFEETGSWEAAVNAGIFHHPTTTPSWTP 881

Query: 947  PSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             SS SS+   R+PIIAMTAN++SESAEEC+ NGMDSFVSKP+TFQKLKECLE+Y P
Sbjct: 882  SSSSSSSSRNRMPIIAMTANSMSESAEECYENGMDSFVSKPITFQKLKECLERYLP 937


>gi|449486822|ref|XP_004157413.1| PREDICTED: LOW QUALITY PROTEIN: histidine kinase 5-like [Cucumis
            sativus]
          Length = 941

 Score = 1246 bits (3223), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1016 (64%), Positives = 763/1016 (75%), Gaps = 97/1016 (9%)

Query: 5    METDLIEDMDIEGLPSMWPEDIGSD--KQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLL 62
            ME  +IEDMDIE +PSMWPED+G D  KQFNVERPG  QDMLEEV I E+ TIVDFKRL+
Sbjct: 1    MENGVIEDMDIEAVPSMWPEDVGPDVRKQFNVERPGADQDMLEEVNIIEEPTIVDFKRLI 60

Query: 63   ELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEE 122
            ELTNYT+KGSSQ+ YL K WEY+Q+NAVRLL+EELD LS+QR+E ELKKL+ILEEH FEE
Sbjct: 61   ELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEE 120

Query: 123  EGYGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKML 182
            E Y GDKRPISI++E  D+W+D+  RK D VFQSKRVE+DAEYDTV YWKQRA+DLEK+L
Sbjct: 121  ERYAGDKRPISILEESCDIWQDIPRRKTDFVFQSKRVEIDAEYDTVTYWKQRAMDLEKLL 180

Query: 183  EASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKEL 242
            EAS QREQ L EKL E++ N+EKQSSPVEELSQILKRADNFLHFVLQNAPVV GHQDKEL
Sbjct: 181  EASLQREQMLAEKLKENIKNIEKQSSPVEELSQILKRADNFLHFVLQNAPVVFGHQDKEL 240

Query: 243  RYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFG 302
            RYRFIYNHFPSL EEDI+G+TDVEIFSGAGVKESQDFK+EVLEKGLPAKREI F+TELFG
Sbjct: 241  RYRFIYNHFPSLQEEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFG 300

Query: 303  SKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
             KTFLIYVEPVFSK+GET+G+NYMGMD+TDQV+KREKMAKLREEIAVQKAKE+ELNKTIH
Sbjct: 301  LKTFLIYVEPVFSKAGETLGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIH 360

Query: 363  ITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
            ITEETMRAKQMLATMSHEIRSPL+GVVSMAEILS TKLDREQR LL VM+SSGDLVLQLI
Sbjct: 361  ITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRHLLDVMLSSGDLVLQLI 420

Query: 423  NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDV 482
            NDILDLSKVESGVMKLEA KFRPREVVKHVLQTAAASL+K L+LEG IADDVPIEVIGDV
Sbjct: 421  NDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRIADDVPIEVIGDV 480

Query: 483  LRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ 542
            LRIRQILTNLISNAIKFT +GKVGI LYV+P PP                          
Sbjct: 481  LRIRQILTNLISNAIKFTHQGKVGINLYVLPYPPI------------------------- 515

Query: 543  PKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIG 602
                             G G + HK         S         E TVWIRCDVYDTGIG
Sbjct: 516  -----------------GTGEECHKKSTAENKSCSP--------ETTVWIRCDVYDTGIG 550

Query: 603  IPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFI 662
            IPENALPTLF++YMQ SADHARKYGGTGLGLAICKQLVELMGG LTV+S+ + GSTFTF+
Sbjct: 551  IPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENHGSTFTFV 610

Query: 663  LPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLP 722
            LPY+VS    +    DD  +++D +S  D++T GFFQFQP +  +L SSNG++R    L 
Sbjct: 611  LPYKVS---SSCSPSDDSDEISDDESTNDEMTEGFFQFQPHSFSTLSSSNGSTRIPNSLL 667

Query: 723  NSIGFASAHKVNGFSE-TSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEP 781
            ++ G+ ++ K+NG +E   Y  P NN            + A+V  +     SS   +P  
Sbjct: 668  HTTGYPTSTKLNGLTEGVPYPIPLNN-----------IANADVVTSSKSQCSSSHVNPNL 716

Query: 782  ENETEVSRGKQCHVETTSWFQN-------PATESTSHSEANREMIQTSKTNEPQKICEMQ 834
            +N        Q   +T +  QN       P  E+T   +   +     ++N+ QK  + +
Sbjct: 717  DN--------QNQPDTNARLQNVGGVNSLPKLETTKLEDRLEK-----QSNKLQKTDQGK 763

Query: 835  EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            E+ +  +   +SSS   PE     +P+ILLVEDNK N+MV +SMMK+ G  IDVV NG+E
Sbjct: 764  ERSEASNHCRNSSSG--PEVTLALEPRILLVEDNKTNIMVTQSMMKKFGQKIDVVTNGIE 821

Query: 895  AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGI--------EQAM 946
            AV AVQ ++YDLILMDV MPVMDGL+ATRLIRSFE+TG+W+AA  AGI            
Sbjct: 822  AVRAVQRRSYDLILMDVFMPVMDGLEATRLIRSFEETGSWEAAVNAGIFHHPTTTPSWTP 881

Query: 947  PSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             SS SS+   R+PIIAMTAN++SESAEEC+ NGMDSFVSKP+TFQKLKECLE+Y P
Sbjct: 882  SSSSSSSSRNRMPIIAMTANSMSESAEECYENGMDSFVSKPITFQKLKECLERYLP 937


>gi|145357869|ref|NP_196633.2| histidine kinase 5 [Arabidopsis thaliana]
 gi|122227002|sp|Q3S4A7.1|AHK5_ARATH RecName: Full=Histidine kinase 5; AltName: Full=Arabidopsis histidine
            kinase 5; Short=AtHK5; AltName: Full=Protein AUTHENTIC
            HIS-KINASE 5; AltName: Full=Protein CYTOKININ-INDEPENDENT
            2
 gi|74058448|gb|AAZ98829.1| cytokinin independent 2 [Arabidopsis thaliana]
 gi|332004205|gb|AED91588.1| histidine kinase 5 [Arabidopsis thaliana]
          Length = 922

 Score = 1157 bits (2992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/1011 (60%), Positives = 734/1011 (72%), Gaps = 100/1011 (9%)

Query: 1    MVCNMETDLIEDMDIEGLPSMWPEDIGS--DKQFNVERPGGGQDMLEEVTIPEDQTIVDF 58
            MVC METD IE+MD+E L SMWPED+G+  DKQFNVE+P G  D L+EVTI E +TI D 
Sbjct: 1    MVCEMETDQIEEMDVEVLSSMWPEDVGTEADKQFNVEKPAGDLDTLKEVTI-ETRTIADM 59

Query: 59   KRLLELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEH 118
             RL  L N T +GSSQ+  LVK WEY Q NAVRLL+EEL NL RQR+E+E K+L+I+EE+
Sbjct: 60   TRLPNLLNSTHQGSSQLTNLVKQWEYMQDNAVRLLKEELKNLDRQREEAEAKELKIIEEY 119

Query: 119  RFEEEGYGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDL 178
            +FE      +   + ++DE SD+++    +K D +  SK++E+  E+DTV YWKQ+AL L
Sbjct: 120  KFE----SNEPENVPVLDETSDLFRRFRQKKRDALVDSKKIEIYEEFDTVAYWKQKALSL 175

Query: 179  EKMLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQ 238
            EKMLEAS +RE+ LMEKL+ES+  +E QS+PV+EL+Q LKRA+ FLHF+LQNAP+VMGHQ
Sbjct: 176  EKMLEASTERERRLMEKLSESLKTMESQSAPVQELTQNLKRAEGFLHFILQNAPIVMGHQ 235

Query: 239  DKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFET 298
            DK+LRY FIYN +PSL E+DILGKTDVEIF G GVKES+DFKREVLEKG  +KREITF T
Sbjct: 236  DKDLRYLFIYNKYPSLREQDILGKTDVEIFHGGGVKESEDFKREVLEKGKASKREITFTT 295

Query: 299  ELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELN 358
            +LFGSKTFLIYVEPV++K+GE IG+NYMGM+VTDQV KREKMAKLRE+ AV+KA E+ELN
Sbjct: 296  DLFGSKTFLIYVEPVYNKAGEKIGINYMGMEVTDQVVKREKMAKLREDNAVRKAMESELN 355

Query: 359  KTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLV 418
            KTIHITEETMRAKQMLATMSHEIRSPL+GVV MAEILS TKLD+EQRQLL VMISSGDLV
Sbjct: 356  KTIHITEETMRAKQMLATMSHEIRSPLSGVVGMAEILSTTKLDKEQRQLLNVMISSGDLV 415

Query: 419  LQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEV 478
            LQLINDILDLSKVESGVM+LEA KFRPREVVKHVLQTAAASL+K L LEG+IADDVPIEV
Sbjct: 416  LQLINDILDLSKVESGVMRLEATKFRPREVVKHVLQTAAASLKKSLTLEGNIADDVPIEV 475

Query: 479  IGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKE 538
            +GDVLRIRQILTNLISNAIKFT EG VGIKL V+ EP F ++          +A +A  E
Sbjct: 476  VGDVLRIRQILTNLISNAIKFTHEGNVGIKLQVISEPSFVRD----------NALNADTE 525

Query: 539  EKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYD 598
            E          +QNG                                 E +VWI CDV+D
Sbjct: 526  EH---------EQNGL-------------------------------TETSVWICCDVWD 545

Query: 599  TGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGST 658
            TGIGIPENALP LF+KYMQ SADHARKYGGTGLGLAICKQLVELMGG+LTVTS+V  GST
Sbjct: 546  TGIGIPENALPCLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVSEGST 605

Query: 659  FTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSK 718
            FTFILPY+V   ++ SDD D+ SDMADQ S  DD   G+FQF+P  LGS++S+ G   S 
Sbjct: 606  FTFILPYKVGRSDDYSDDQDEFSDMADQQSEPDDTAEGYFQFKP-LLGSIYSNGGPGISN 664

Query: 719  KLLPNSIGFASAHK-VNGFSETSYSFPSNNR-QKETAPLEDACSVAEVAETLSEPESSFS 776
              LP+ +   S  K +NGF     + PSNN  Q E   LE+   + E     S+ E+S  
Sbjct: 665  DFLPHKVMLTSPIKLINGF----VADPSNNTGQSEMLQLENGGYMDE-----SKLETSSG 715

Query: 777  HSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEK 836
            H PE  ++ E   G+    E+ S   + A+      E   E+  +S   E +        
Sbjct: 716  HCPESAHQYENGNGRCFSKESESCSSSQASSEGGTLEMESELTVSSHREEEK-------- 767

Query: 837  PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
                      +  EV ET    KPKILLVEDNKIN+MVAKSMMKQLGH++D+ NNGVEA+
Sbjct: 768  ----------AETEVKET---SKPKILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAI 814

Query: 897  HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH-- 954
             A+   +YDL+LMDVCMPV+DGLKATRLIRS+E+TGNW+AA EAG++     S S N   
Sbjct: 815  TAINSSSYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVD----ISTSENEQV 870

Query: 955  ----FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                  R+PIIAMTAN L+ES+EEC+ANGMDSF+SKPVT QKL+ECL+QY 
Sbjct: 871  CMRPTNRLPIIAMTANTLAESSEECYANGMDSFISKPVTLQKLRECLQQYL 921


>gi|297807105|ref|XP_002871436.1| hypothetical protein ARALYDRAFT_909030 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297317273|gb|EFH47695.1| hypothetical protein ARALYDRAFT_909030 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 923

 Score = 1152 bits (2979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/1010 (60%), Positives = 733/1010 (72%), Gaps = 97/1010 (9%)

Query: 1    MVCNMETDLIEDMDIEGLPSMWPEDIGS--DKQFNVERPGGGQDMLEEVTIPEDQTIVDF 58
            MVC METD IE+MD+E L SMWPE++G+  DKQFNVE+P G  D L+EVTI E  TI D 
Sbjct: 1    MVCEMETDQIEEMDVEVLSSMWPENVGTEADKQFNVEKPAGDLDTLKEVTIEEKPTIADL 60

Query: 59   KRLLELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEH 118
             RL EL N T +GSSQ+  LVK WEY Q NAVRLLREEL NL+RQR+E+E K+L+I+EE+
Sbjct: 61   TRLPELMNSTQQGSSQLTNLVKQWEYMQDNAVRLLREELKNLNRQREEAEAKELKIIEEY 120

Query: 119  RFEEEGYGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDL 178
            +FE      +   + ++DE SD+++    +K D +  SK++E+  E+DTV YWKQ+AL+L
Sbjct: 121  KFE----SNEPENVPVLDETSDLFRRFRQKKRDALVDSKKIEIYEEFDTVAYWKQKALNL 176

Query: 179  EKMLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQ 238
            EKMLEAS +RE+ L+EKL+ES+  +E QS+PV+EL+Q L+RA+ FLHF+LQNAP+VMGHQ
Sbjct: 177  EKMLEASTERERRLVEKLSESLKTMESQSAPVQELTQNLERAEGFLHFILQNAPIVMGHQ 236

Query: 239  DKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFET 298
            DK+LRY FIYN +PSL E+DILGKTDVEIF G GVKESQDFKREVLEKG  +KREITF T
Sbjct: 237  DKDLRYLFIYNKYPSLREQDILGKTDVEIFHGGGVKESQDFKREVLEKGKASKREITFTT 296

Query: 299  ELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELN 358
            +LFGSKTFLIYVEPV++K+GE IG+NYMGM+VT+QV KREKMAKLRE+ AV+KA E+ELN
Sbjct: 297  DLFGSKTFLIYVEPVYNKAGEKIGINYMGMEVTEQVDKREKMAKLREDNAVRKAMESELN 356

Query: 359  KTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLV 418
            KTIHITEETMRAKQMLATMSHEIRSPL+GVV MAEILS T+LD+EQRQLL VMISSGDLV
Sbjct: 357  KTIHITEETMRAKQMLATMSHEIRSPLSGVVGMAEILSTTRLDKEQRQLLNVMISSGDLV 416

Query: 419  LQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEV 478
            LQLINDILDLSKVESGVMKLEA KFRPREVVKHVLQTAAASL+K L LEG+IADDVPIEV
Sbjct: 417  LQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLKKSLTLEGNIADDVPIEV 476

Query: 479  IGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKE 538
            +GDVLRIRQILTNLISNAIKFT EG VGIKL V+ EP FA++          +   A  E
Sbjct: 477  VGDVLRIRQILTNLISNAIKFTHEGNVGIKLQVISEPSFARD----------NTLTADTE 526

Query: 539  EKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYD 598
            E+         +QNG                                 E +VWI CDV+D
Sbjct: 527  EQ---------EQNGL-------------------------------TETSVWICCDVWD 546

Query: 599  TGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGST 658
            TGIGIPENA+P LF+KYMQ SADHARKYGGTGLGLAICKQLVELMGG+LTVTS+V+ GST
Sbjct: 547  TGIGIPENAIPCLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVNEGST 606

Query: 659  FTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSK 718
            FTFILPY+V   ++ SDD D+ SDMAD  S  DD   G+FQF+P  LGS++S+ G     
Sbjct: 607  FTFILPYKVGTSDDYSDDQDEFSDMADHQSEPDDTAEGYFQFKP-LLGSIYSNGGPGIGN 665

Query: 719  KLLPNSIGFASAHKV-NGFSETSYSFPSNNR-QKETAPLEDACSVAEVAETLSEPESSFS 776
              LP+ +   S  K+ N F     + PSNN  Q E   LE+   V E     S+ E+S  
Sbjct: 666  DFLPHKVMLTSPIKLMNSF----VADPSNNTGQSEMLQLENGGYVDE-----SKLETSSG 716

Query: 777  HSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEK 836
            H PE  ++ E   G+    E+ S   + A+      E   E+  +S   E +   +++E 
Sbjct: 717  HCPESAHQYENGNGRCFSKESESCSSSQASSEGGTLEMESELTVSSHREEEKAETDLKE- 775

Query: 837  PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
                                  KPKILLVEDNKIN+MVAKSMMKQLGH++D+ NNGVEA+
Sbjct: 776  --------------------TSKPKILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAI 815

Query: 897  HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGI-----EQAMPSSGS 951
             A+   +YDL+LMDVCMPV+DGLKATRLIRS+E+TGNW+AA EAG+     E       S
Sbjct: 816  TAINHSSYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDIKTLENEQVCVRS 875

Query: 952  SNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            +N   R+PIIAMTAN L+ES+EEC+ANGMDSF+SKPVT QKL+ECL+QY 
Sbjct: 876  TN---RLPIIAMTANTLAESSEECYANGMDSFISKPVTLQKLRECLQQYL 922


>gi|10129650|emb|CAC08246.1| histidine kinase-like protein [Arabidopsis thaliana]
          Length = 950

 Score = 1130 bits (2924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/1039 (58%), Positives = 731/1039 (70%), Gaps = 132/1039 (12%)

Query: 5    METDLIEDMDIEGLPSMWPEDIGS--DKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLL 62
            METD IE+MD+E L SMWPED+G+  DKQFNVE+P G  D L+EVTI E +TI D  RL 
Sbjct: 1    METDQIEEMDVEVLSSMWPEDVGTEADKQFNVEKPAGDLDTLKEVTI-ETRTIADMTRLP 59

Query: 63   ELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEE 122
             L N T +GSSQ+  LVK WEY Q NAVRLL+EEL NL RQR+E+E K+L+I+EE++FE 
Sbjct: 60   NLLNSTHQGSSQLTNLVKQWEYMQDNAVRLLKEELKNLDRQREEAEAKELKIIEEYKFE- 118

Query: 123  EGYGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKML 182
                 +   + ++DE SD+++    +K D +  SK++E+  E+DTV YWKQ+AL LEKML
Sbjct: 119  ---SNEPENVPVLDETSDLFRRFRQKKRDALVDSKKIEIYEEFDTVAYWKQKALSLEKML 175

Query: 183  EASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKEL 242
            EAS +RE+ LMEKL+ES+  +E QS+PV+EL+Q LKRA+ FLHF+LQNAP+VMGHQDK+L
Sbjct: 176  EASTERERRLMEKLSESLKTMESQSAPVQELTQNLKRAEGFLHFILQNAPIVMGHQDKDL 235

Query: 243  RYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFG 302
            RY FIYN +PSL E+DILGKTDVEIF G GVKES+DFKREVLEKG  +KREITF T+LFG
Sbjct: 236  RYLFIYNKYPSLREQDILGKTDVEIFHGGGVKESEDFKREVLEKGKASKREITFTTDLFG 295

Query: 303  SKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
            SKTFLIYVEPV++K+GE IG+NYMGM+VTDQV KREKMAKLRE+ AV+KA E+ELNKTIH
Sbjct: 296  SKTFLIYVEPVYNKAGEKIGINYMGMEVTDQVVKREKMAKLREDNAVRKAMESELNKTIH 355

Query: 363  ITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
            ITEETMRAKQMLATMSHEIRSPL+GVV MAEILS TKLD+EQRQLL VMISSGDLVLQLI
Sbjct: 356  ITEETMRAKQMLATMSHEIRSPLSGVVGMAEILSTTKLDKEQRQLLNVMISSGDLVLQLI 415

Query: 423  NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDV 482
            NDILDLSKVESGVM+LEA KFRPREVVKHVLQTAAASL+K L LEG+IADDVPIEV+GDV
Sbjct: 416  NDILDLSKVESGVMRLEATKFRPREVVKHVLQTAAASLKKSLTLEGNIADDVPIEVVGDV 475

Query: 483  LRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ 542
            LRIRQILTNLISNAIKFT EG VGIKL V+ EP F ++          +A +A  EE   
Sbjct: 476  LRIRQILTNLISNAIKFTHEGNVGIKLQVISEPSFVRD----------NALNADTEEH-- 523

Query: 543  PKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIG 602
                   +QNG                                 E +VWI CDV+DTGIG
Sbjct: 524  -------EQNGL-------------------------------TETSVWICCDVWDTGIG 545

Query: 603  IP--------------------------------ENALPTLFRKYMQVSADHARKYGGTG 630
            IP                                ENALP LF+KYMQ SADHARKYGGTG
Sbjct: 546  IPGKQAILTNEHEKTKKLQLTYILTWFMFWCSCAENALPCLFKKYMQASADHARKYGGTG 605

Query: 631  LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVT 690
            LGLAICKQLVELMGG+LTVTS+V  GSTFTFILPY+V   ++ SDD D+ SDMADQ S  
Sbjct: 606  LGLAICKQLVELMGGQLTVTSRVSEGSTFTFILPYKVGRSDDYSDDQDEFSDMADQQSEP 665

Query: 691  DDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHK-VNGFSETSYSFPSNNR- 748
            DD   G+FQF+P  LGS++S+ G   S   LP+ +   S  K +NGF     + PSNN  
Sbjct: 666  DDTAEGYFQFKP-LLGSIYSNGGPGISNDFLPHKVMLTSPIKLINGF----VADPSNNTG 720

Query: 749  QKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATES 808
            Q E   LE+   + E     S+ E+S  H PE  ++ E   G+    E+ S   + A+  
Sbjct: 721  QSEMLQLENGGYMDE-----SKLETSSGHCPESAHQYENGNGRCFSKESESCSSSQASSE 775

Query: 809  TSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDN 868
                E   E+  +S   E +                  +  EV ET    KPKILLVEDN
Sbjct: 776  GGTLEMESELTVSSHREEEK------------------AETEVKET---SKPKILLVEDN 814

Query: 869  KINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSF 928
            KIN+MVAKSMMKQLGH++D+ NNGVEA+ A+   +YDL+LMDVCMPV+DGLKATRLIRS+
Sbjct: 815  KINIMVAKSMMKQLGHTMDIANNGVEAITAINSSSYDLVLMDVCMPVLDGLKATRLIRSY 874

Query: 929  EDTGNWDAAAEAGIEQAMPSSGSSNH------FKRIPIIAMTANALSESAEECFANGMDS 982
            E+TGNW+AA EAG++     S S N         R+PIIAMTAN L+ES+EEC+ANGMDS
Sbjct: 875  EETGNWNAAIEAGVD----ISTSENEQVCMRPTNRLPIIAMTANTLAESSEECYANGMDS 930

Query: 983  FVSKPVTFQKLKECLEQYF 1001
            F+SKPVT QKL+ECL+QY 
Sbjct: 931  FISKPVTLQKLRECLQQYL 949


>gi|296083781|emb|CBI23998.3| unnamed protein product [Vitis vinifera]
          Length = 803

 Score = 1120 bits (2896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/905 (65%), Positives = 665/905 (73%), Gaps = 162/905 (17%)

Query: 113  EILEEHRFEEEGYGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWK 172
            ++LEEH      YGGDKRPISI+D + D+W++V  R+N VV Q+KR+E+DAEYDTV YWK
Sbjct: 44   DMLEEHI----SYGGDKRPISILDGIYDIWQEVPRRRNSVVVQNKRLEIDAEYDTVIYWK 99

Query: 173  QRALDLEKMLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAP 232
            QRA+ LEK+LEAS QRE  LMEK+ ES+ +LE+QSSPVEELSQILKRADNFLHFVLQNAP
Sbjct: 100  QRAVHLEKLLEASVQREHMLMEKVQESIKSLERQSSPVEELSQILKRADNFLHFVLQNAP 159

Query: 233  VVMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKR 292
            VV+GHQDKELRYRFIYNHFPSL EEDI+GKTDVEIF+GAGVKESQ+FK+EVLE+GLPAKR
Sbjct: 160  VVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQEFKKEVLERGLPAKR 219

Query: 293  EITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKA 352
            EITFETELFGSKTFLIYVEPVFSK+G+TIGVNYMGMDVTDQVRKREKM K+REEIAVQKA
Sbjct: 220  EITFETELFGSKTFLIYVEPVFSKAGDTIGVNYMGMDVTDQVRKREKMMKIREEIAVQKA 279

Query: 353  KETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMI 412
            KETELNKTIHITEETMRAKQMLATMSHEIRSPL+GVVS+AEIL+ T LDR QRQLL VM+
Sbjct: 280  KETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSIAEILATTNLDRHQRQLLNVML 339

Query: 413  SSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIAD 472
            SSGDLVLQLINDILDLSKVESGVMKLEA KFRPREVVKHVLQTAAASLQKIL LEG +AD
Sbjct: 340  SSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVAD 399

Query: 473  DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSA 532
            DVP+EV GDVLRIRQILTNLISNA+KFT EGKVGI LYV+PEP                 
Sbjct: 400  DVPLEVTGDVLRIRQILTNLISNAVKFTHEGKVGINLYVIPEP----------------- 442

Query: 533  TDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDED------L 586
                            S  NG                   G P++H +S  ED      L
Sbjct: 443  ----------------SSGNG------------------EGDPINHDDSKQEDKENSHPL 468

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            E TVWIRCDVYDTGIGIPE+ALPTLF+KYMQVSADHARKYGGTGLGLAICKQLVELMGG 
Sbjct: 469  ETTVWIRCDVYDTGIGIPEHALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGH 528

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLG 706
            +TV+S+ H GSTFTFILPY+VS I ++SDDPD+LSDMAD D+ TDD  AGFFQF PRTL 
Sbjct: 529  MTVSSREHSGSTFTFILPYKVSLISDHSDDPDELSDMADDDASTDDKNAGFFQFHPRTL- 587

Query: 707  SLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAE 766
                                                        E   LED CSV + AE
Sbjct: 588  --------------------------------------------EMTSLEDTCSVVDAAE 603

Query: 767  TLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNE 826
            TLSEPES                                          +E+ +  KT+E
Sbjct: 604  TLSEPESF-----------------------------------------KEVDEMGKTSE 622

Query: 827  PQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSI 886
              ++C   E  +R SQ  SSSS E  E K   KPKILLVED+KINVMV +SMMKQLGH+I
Sbjct: 623  APEMCLRLEISERSSQCTSSSSPE--EPKSTLKPKILLVEDSKINVMVTQSMMKQLGHTI 680

Query: 887  DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAM 946
            DVVNNG+EAV AVQC++YDLILMDVCMPVMDGL+ATR+IRSFE+TGNWDAA +AGIE   
Sbjct: 681  DVVNNGIEAVRAVQCRSYDLILMDVCMPVMDGLQATRIIRSFEETGNWDAAVKAGIE--- 737

Query: 947  PSSGSSNHF----------KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKEC 996
            PS+ SS+            KR+PIIAMTANALSESA+EC+ANGMDSFVSKPVTFQKL +C
Sbjct: 738  PSTCSSDSLPNGHDSMTVTKRVPIIAMTANALSESADECYANGMDSFVSKPVTFQKLTQC 797

Query: 997  LEQYF 1001
            L+QY 
Sbjct: 798  LQQYL 802



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 38/48 (79%), Gaps = 2/48 (4%)

Query: 1  MVCNMETDLIEDMDIEGLPSMWPEDIGSD--KQFNVERPGGGQDMLEE 46
          MVC ME D IE+MD+E L SMWPEDIG+D   QFN++RPG  QDMLEE
Sbjct: 1  MVCEMENDNIEEMDVEVLHSMWPEDIGNDAGNQFNMDRPGADQDMLEE 48


>gi|357465939|ref|XP_003603254.1| Hybrid signal transduction histidine kinase K [Medicago truncatula]
 gi|355492302|gb|AES73505.1| Hybrid signal transduction histidine kinase K [Medicago truncatula]
          Length = 950

 Score = 1062 bits (2747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/736 (72%), Positives = 614/736 (83%), Gaps = 41/736 (5%)

Query: 5   METDLIED-MDIEGLPSMWPEDIGSD--KQFNVERPGGGQDMLEEVTIPED-QTIVDFKR 60
           ME + +ED M+IE LPSMWPEDIG+D  KQFN+E+PG  QD+LEEV+I ++  TI DFKR
Sbjct: 1   MEKECVEDIMEIEVLPSMWPEDIGADVGKQFNIEKPGNDQDVLEEVSIIDEVTTIADFKR 60

Query: 61  LLELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRF 120
           L+ELTN+T+KGSSQ+AYL+KHWEY+Q++  RLLREELDNL++QRQ+ EL+KLEILEEHRF
Sbjct: 61  LIELTNFTEKGSSQLAYLMKHWEYKQASVARLLREELDNLNKQRQDVELRKLEILEEHRF 120

Query: 121 EEEGYGGDKRPISIMDELSDMWK-DVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLE 179
           E+E YGGDKRP+SI+D++ D+W+ DV  RK++VV Q+KRVE+DAEYDTV YWKQRA+ LE
Sbjct: 121 EDERYGGDKRPVSILDDIYDIWQQDVPCRKSNVVVQNKRVEIDAEYDTVVYWKQRAMHLE 180

Query: 180 KMLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQD 239
           K+LEAS QRE+ L +KL ES+ N+E+QSSPVEELSQILKRADNFLHF+LQNAPVV+GHQD
Sbjct: 181 KLLEASIQREETLEQKLKESIKNIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQD 240

Query: 240 KELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETE 299
           KELRYRFIYNHFPSLHEEDI+GKTDVEIF+G+GVKE+QDFKREVLEKGLPAKREITFETE
Sbjct: 241 KELRYRFIYNHFPSLHEEDIIGKTDVEIFTGSGVKENQDFKREVLEKGLPAKREITFETE 300

Query: 300 LFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNK 359
           LFGSKTFLIYVEPVFSK+GETIG+NYMGMDVTDQVRKRE+MAK+REEIAVQKAKETELNK
Sbjct: 301 LFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNK 360

Query: 360 TIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVL 419
           TIHITEETMRAKQ+LATMSHEIRSPL+GVVSMAEILS TKLD+EQRQLL VM+SSGDLVL
Sbjct: 361 TIHITEETMRAKQVLATMSHEIRSPLSGVVSMAEILSTTKLDKEQRQLLDVMLSSGDLVL 420

Query: 420 QLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIE-- 477
           QLINDILDLSKVESGVMKLEA KFRPREVVKHVLQTAAASLQKIL +EG +ADDVPIE  
Sbjct: 421 QLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTIEGHVADDVPIEVM 480

Query: 478 VIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQK-SKAYQS-ATDA 535
           VIGDVLRIRQILTNL SNAIKFT EGKVGI LYVV EP F K G  QK S  Y + + + 
Sbjct: 481 VIGDVLRIRQILTNLTSNAIKFTNEGKVGINLYVVQEPSFTKSGSVQKISSGYSTISVNV 540

Query: 536 VKEEKHQPKSQTAS------DQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEAT 589
           VKEE++    +  S        NG  + +H                  H N      E T
Sbjct: 541 VKEERYGVNDECISLVKSECSMNGDTEDQH------------------HSN------ETT 576

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           VWI CDVYDTGIGIPENA+ +LF++YMQVS DHARKYGGTGLGLAICKQLVELMGGRLTV
Sbjct: 577 VWIGCDVYDTGIGIPENAIHSLFKRYMQVSVDHARKYGGTGLGLAICKQLVELMGGRLTV 636

Query: 650 TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTA-GFFQFQPRTLGSL 708
           +SK   GSTFTFILPY+VS   ++SD  D+ SDM   D+ +DD T  GFFQFQP  LG +
Sbjct: 637 SSKEQNGSTFTFILPYKVSIACDSSDYSDEFSDMEHNDATSDDTTTEGFFQFQPPNLGHI 696

Query: 709 FSSNGTSRS-KKLLPN 723
            SS G +R+  KLL +
Sbjct: 697 VSSGGANRTHNKLLSH 712


>gi|125556321|gb|EAZ01927.1| hypothetical protein OsI_23953 [Oryza sativa Indica Group]
          Length = 968

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/998 (52%), Positives = 677/998 (67%), Gaps = 62/998 (6%)

Query: 20   SMWPEDIGS--DKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLELTNYTDKGSSQMAY 77
            SMWPE+IG    KQF +E+ G  QD LE+    +  + VD  RL+EL N ++KG SQM Y
Sbjct: 16   SMWPENIGDKHQKQFKMEKLGKDQDALEDANFQQKPSSVDLNRLMELAN-SEKGVSQMQY 74

Query: 78   LVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEGYGGDKRPISIMDE 137
             VKHWEY+++N  RLL+E++  L +QR+E E +K +ILEE +F++E Y   KR + I+DE
Sbjct: 75   FVKHWEYKRANTARLLKEQIGLLCQQRKEIEQRKQQILEEQQFQDESYYAVKRQVPILDE 134

Query: 138  L-SDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKMLEASGQREQALMEKL 196
            +  D WK    +KND +  ++ +++DAEYD++ YWK+RA+ LEK LEAS QRE++L EKL
Sbjct: 135  VYKDEWKRPS-KKNDDLSHNQELKIDAEYDSISYWKERAMQLEKTLEASLQRERSLEEKL 193

Query: 197  NESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHE 256
             E++ NL+  + PVEE S +LKRAD FLH VLQ+AP+V+ HQD +LRYRFI+NHFP+L +
Sbjct: 194  EENIKNLQSHT-PVEEFSGMLKRADYFLHLVLQSAPIVIAHQDADLRYRFIFNHFPTLAD 252

Query: 257  EDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSK 316
            ED++GKTD EI SG G++E  + K+EV+  G   KRE  F T LFG+KTF+ Y+EPVFSK
Sbjct: 253  EDVIGKTDYEILSGEGIEEMNNVKKEVMASGKATKREFVFNTPLFGAKTFVTYIEPVFSK 312

Query: 317  SGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLAT 376
            SGETIGVNY+ MD+TDQV +REKMA +R   AVQKAKETEL+K++HITEETMRAKQMLAT
Sbjct: 313  SGETIGVNYVAMDITDQVTRREKMADIRVREAVQKAKETELSKSLHITEETMRAKQMLAT 372

Query: 377  MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
            MSHEIRSPL+GV+SMAEIL+ TKLD+EQ QLL VM+SSGDLVLQLINDILDLSKVESG M
Sbjct: 373  MSHEIRSPLSGVLSMAEILATTKLDKEQYQLLEVMLSSGDLVLQLINDILDLSKVESGAM 432

Query: 437  KLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA 496
            KLEA  FRPREVVKHVLQTAAASL+K L+LEG I D+VP+EV GDVLRIRQILTNLISNA
Sbjct: 433  KLEATTFRPREVVKHVLQTAAASLKKELILEGCIGDNVPLEVTGDVLRIRQILTNLISNA 492

Query: 497  IKFTPEGKVGIKLYVVPE--PPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGF 554
            +KFT EGKVGI L+V+ +  P    EG +  SKA+ +        +H   S    D +  
Sbjct: 493  VKFTHEGKVGINLHVLDKQLPGCRIEGGQLHSKAHSAPA---AAAEHFSASPRKCDNDTL 549

Query: 555  HDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRK 614
                   G  +H+     G P +       + +  VW+RCDVYDTGIGIPE +LP LF++
Sbjct: 550  -------GCSNHEDACQTGIPSNDNFGEHHEGDEVVWLRCDVYDTGIGIPEKSLPLLFKR 602

Query: 615  YMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENS 674
            YMQ S DHARKYGGTGLGLAICKQLVELMGG LTV SK + GSTF+F+LP ++   E++S
Sbjct: 603  YMQASDDHARKYGGTGLGLAICKQLVELMGGTLTVVSKENEGSTFSFVLPCKIPVKEDHS 662

Query: 675  DDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVN 734
            DDPDD+   +  D  T D+  G F F+P+    L +S  +  +   L     F       
Sbjct: 663  DDPDDMPS-SGGDFTTSDI-EGSFIFKPQARPYLLTSGVSVMNNTKLIGGNQF------- 713

Query: 735  GFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSR-GKQC 793
                  Y  P  N  ++  P  +   +AE   T S   +  S+ P       VSR  K+ 
Sbjct: 714  ------YDPP--NILEDRKPFSNGFVLAEDHSTNSASTAHQSNGP------SVSRTNKEQ 759

Query: 794  HVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPE 853
            H        N   E  S S  +   + +   +E +  C + E+     +S  S S+    
Sbjct: 760  HDNAMVIELNRQAERVSSSRGDTTSV-SGLIHEERGPCRVHEEKSLHKKSKCSPSSN--- 815

Query: 854  TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCM 913
                 K KILLVEDNK+N+MVAKSM++QLGH ID+VNNG+EA+ A+Q + YD+ILMDV M
Sbjct: 816  -----KAKILLVEDNKVNIMVAKSMLEQLGHGIDIVNNGLEAIRAIQKRQYDIILMDVHM 870

Query: 914  PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN-----HF----KRIPIIAMT 964
            P MDGL+AT+ IRSFE+TG WD + +   +Q +  +GS N     H     KR+PIIAMT
Sbjct: 871  PEMDGLQATKFIRSFENTGCWDTSVKPEHDQII--AGSDNLSDCAHMKKQGKRVPIIAMT 928

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            AN+ SESAEEC A GMDS++SKPV FQ +KECL+QY P
Sbjct: 929  ANSFSESAEECLAAGMDSYISKPVNFQNIKECLQQYLP 966


>gi|125598077|gb|EAZ37857.1| hypothetical protein OsJ_22203 [Oryza sativa Japonica Group]
          Length = 968

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/998 (52%), Positives = 676/998 (67%), Gaps = 62/998 (6%)

Query: 20   SMWPEDIGS--DKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLELTNYTDKGSSQMAY 77
            SMWPE+IG    KQF +E+ G  QD LE+    +  + VD  RL+EL N ++KG SQM Y
Sbjct: 16   SMWPENIGDKHQKQFKMEKLGKDQDALEDANFQQKPSSVDLNRLMELAN-SEKGVSQMQY 74

Query: 78   LVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEGYGGDKRPISIMDE 137
             VKHWEY+++N  RLL+E++  L +QR+E E +K +ILEE +F++E Y   K  + I+DE
Sbjct: 75   FVKHWEYKRANTARLLKEQIGLLCQQRKEIEQRKQQILEEQQFQDESYYAVKWQVPILDE 134

Query: 138  L-SDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKMLEASGQREQALMEKL 196
            +  D WK    +KND +  ++ +++DAEYD++ YWK+RA+ LEK LEAS QRE++L EKL
Sbjct: 135  VYKDEWKRPS-KKNDDLSHNQELKIDAEYDSISYWKERAMQLEKTLEASLQRERSLEEKL 193

Query: 197  NESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHE 256
             E++ NL+  + PVEE S +LKRAD FLH VLQ+AP+V+ HQD +LRYRFI+NHFP+L +
Sbjct: 194  EENIKNLQSHT-PVEEFSGMLKRADYFLHLVLQSAPIVIAHQDADLRYRFIFNHFPTLAD 252

Query: 257  EDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSK 316
            ED++GKTD EI SG G++E  + K+EV+  G   KRE  F T LFG+KTF+ Y+EPVFSK
Sbjct: 253  EDVIGKTDYEILSGEGIEEMNNVKKEVMASGKATKREFVFNTPLFGAKTFVTYIEPVFSK 312

Query: 317  SGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLAT 376
            SGETIGVNY+ MD+TDQV +REKMA +R   AVQKAKETEL+K++HITEETMRAKQMLAT
Sbjct: 313  SGETIGVNYVAMDITDQVTRREKMADIRVREAVQKAKETELSKSLHITEETMRAKQMLAT 372

Query: 377  MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
            MSHEIRSPL+GV+SMAEIL+ TKLD+EQ QLL VM+SSGDLVLQLINDILDLSKVESG M
Sbjct: 373  MSHEIRSPLSGVLSMAEILATTKLDKEQYQLLEVMLSSGDLVLQLINDILDLSKVESGAM 432

Query: 437  KLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA 496
            KLEA  FRPREVVKHVLQTAAASL+K L+LEG I D+VP+EV GDVLRIRQILTNLISNA
Sbjct: 433  KLEATTFRPREVVKHVLQTAAASLKKELILEGCIGDNVPLEVTGDVLRIRQILTNLISNA 492

Query: 497  IKFTPEGKVGIKLYVVPE--PPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGF 554
            +KFT EGKVGI L+V+ +  P    EG +  SKA+ +        +H   S    D +  
Sbjct: 493  VKFTHEGKVGINLHVLDKQLPGCRIEGGQLHSKAHSAPA---AAAEHFSASPRKCDNDTL 549

Query: 555  HDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRK 614
                   G  +H+     G P +       + +  VW+RCDVYDTGIGIPE +LP LF++
Sbjct: 550  -------GCSNHEDACQTGIPSNDNFGEHHEGDEVVWLRCDVYDTGIGIPEKSLPLLFKR 602

Query: 615  YMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENS 674
            YMQ S DHARKYGGTGLGLAICKQLVELMGG LTV SK + GSTF+F+LP ++   E++S
Sbjct: 603  YMQASDDHARKYGGTGLGLAICKQLVELMGGTLTVVSKENEGSTFSFVLPCKIPVKEDHS 662

Query: 675  DDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVN 734
            DDPDD+   +  D  T D+  G F F+P+    L +S  +  +   L     F       
Sbjct: 663  DDPDDMPS-SGGDFTTSDI-EGSFIFKPQARPYLLTSGVSVMNNTKLIGGNQF------- 713

Query: 735  GFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSR-GKQC 793
                  Y  P  N  ++  P  +   +AE   T S   +  S+ P       VSR  K+ 
Sbjct: 714  ------YDPP--NILEDRKPFSNGFVLAEDHSTNSASTAHQSNGP------SVSRTNKEQ 759

Query: 794  HVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPE 853
            H        N   E  S S  +   + +   ++ +  C + E+     +S  S S+    
Sbjct: 760  HDNAMVIELNRQAERVSSSRGDTTSV-SGLIHDERGPCRVHEEKSLHKKSKCSPSSN--- 815

Query: 854  TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCM 913
                 K KILLVEDNK+N+MVAKSM++QLGH ID+VNNG+EA+ A+Q + YD+ILMDV M
Sbjct: 816  -----KAKILLVEDNKVNIMVAKSMLEQLGHGIDIVNNGLEAIRAIQKRQYDIILMDVHM 870

Query: 914  PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN-----HF----KRIPIIAMT 964
            P MDGL+AT+ IRSFE+TG WD + +   +Q +  +GS N     H     KR+PIIAMT
Sbjct: 871  PEMDGLQATKFIRSFENTGCWDTSVKPEHDQII--AGSDNLSDCAHMKKQGKRVPIIAMT 928

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            AN+ SESAEEC A GMDS++SKPV FQ +KECL+QY P
Sbjct: 929  ANSFSESAEECLAAGMDSYISKPVNFQNIKECLQQYLP 966


>gi|242093796|ref|XP_002437388.1| hypothetical protein SORBIDRAFT_10g026020 [Sorghum bicolor]
 gi|241915611|gb|EER88755.1| hypothetical protein SORBIDRAFT_10g026020 [Sorghum bicolor]
          Length = 959

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/999 (52%), Positives = 676/999 (67%), Gaps = 75/999 (7%)

Query: 20   SMWPEDIGS--DKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLELTNYTDKGSSQMAY 77
            SMWPE+IG    +QF +E     QD  ++V   E    VD++RL+E+ N ++KG SQM Y
Sbjct: 16   SMWPENIGDKHQRQFRMENFRKDQDAFKDVKFDEKPVHVDYQRLIEMAN-SEKGISQMQY 74

Query: 78   LVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEGYGGDKRPISIMDE 137
             +KHWEY+++NA RLL EEL  L +QR+E E  K +ILEE RF++E Y   KR + I+DE
Sbjct: 75   FMKHWEYKRANAARLLEEELGLLCQQRKEIEQNKQQILEEQRFQDESYYAVKRHVPILDE 134

Query: 138  L-SDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKMLEASGQREQALMEKL 196
            +  D WK    +KND + +S+  ++DA+YD+V YWK+RA  LE+ LE S QRE++L+EKL
Sbjct: 135  VYEDEWKRP-SKKNDDLSRSRETKIDADYDSVSYWKERATKLEEKLEESIQRERSLVEKL 193

Query: 197  NESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHE 256
             E++ NL+  + P EE S +LKRAD FLH VLQ+AP+V+ HQD +LRYRFI+NH+P+L +
Sbjct: 194  EENIKNLQSHT-PAEEFSGMLKRADYFLHLVLQSAPIVIAHQDADLRYRFIFNHYPTLAD 252

Query: 257  EDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSK 316
            ED++GKTD EI SG G++E    KREV+  G+  KRE  F T +FG+KTF+ Y+EPVFSK
Sbjct: 253  EDVIGKTDYEILSGEGIEEMNSVKREVMATGIATKREFAFNTPMFGAKTFVTYIEPVFSK 312

Query: 317  SGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLAT 376
             GETIGVNY+ MD+TDQV++REKMA +R   AVQ AKETEL+K++HITEETMRAKQMLAT
Sbjct: 313  GGETIGVNYVAMDITDQVKRREKMADIRVREAVQNAKETELSKSLHITEETMRAKQMLAT 372

Query: 377  MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
            MSHEIRSPL+GV+SMAEIL+ TKLD+EQ QLL VM+SSGDLVLQLINDILDLSKVESG M
Sbjct: 373  MSHEIRSPLSGVLSMAEILATTKLDKEQHQLLEVMLSSGDLVLQLINDILDLSKVESGAM 432

Query: 437  KLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA 496
            KLE+  FRPREVVKHVLQTAAASL+K L LEG I DDVP+EVIGDVLRIRQILTNLISNA
Sbjct: 433  KLESTTFRPREVVKHVLQTAAASLKKELTLEGCIGDDVPVEVIGDVLRIRQILTNLISNA 492

Query: 497  IKFTPEGKVGIKLYVV--PEPPFAKEGLKQKSKAYQ-SATDAVKEEKHQPKSQTASDQNG 553
            +KFT EGKVGI L VV   +P    EG K   +AY  +A  AV+     P++    D++ 
Sbjct: 493  VKFTHEGKVGIILQVVHDKQPGCKIEGGKIHKRAYSGTAITAVETAVVSPRN---CDKDN 549

Query: 554  FHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFR 613
             H  KH + +Q+       G P       D + E  VW+RCDVYDTGIGIPE +LP LF+
Sbjct: 550  LHCSKHEDAFQN-------GVPTCENFKEDIEGEEVVWLRCDVYDTGIGIPEKSLPLLFK 602

Query: 614  KYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEEN 673
            +YMQ S DHARKYGGTGLGLAICKQLVELMGG LTV SK + GSTFTF+LP ++   EE+
Sbjct: 603  RYMQASTDHARKYGGTGLGLAICKQLVELMGGTLTVVSKENEGSTFTFVLPCKIPVKEEH 662

Query: 674  SDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGT--SRSKKLLPNSIGFASAH 731
            SDDPD++   +  DS   D+   FF F+P+   SL S   +  + +K      + +    
Sbjct: 663  SDDPDEVHS-SQNDSANSDIEGSFF-FKPQMRASLLSPGVSIMNNTKLFGAKLMCYDPPD 720

Query: 732  KV--NGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSR 789
            K+  NGFS T  +F +                           +S +H  +P  +T  S 
Sbjct: 721  KLFSNGFSSTEPNFTN---------------------------TSTAH--QPNGDTVRST 751

Query: 790  GKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSA 849
             ++ H        N   E  S S  +  ++  S    P K+ E Q    +   SP+S+  
Sbjct: 752  AEEEHDNAMVLELNSQAERVSSSRGD--LVSVSGA-APCKVLEEQSFHKKSKCSPTSN-- 806

Query: 850  EVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909
                     K KILLVEDNK+N++VAKSM++QLGH+ID+VNNG++A+ AVQ   YDLILM
Sbjct: 807  ---------KAKILLVEDNKVNIIVAKSMLEQLGHAIDIVNNGMQAIRAVQQHQYDLILM 857

Query: 910  DVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS---SGSSNHFK----RIPIIA 962
            DV MP MDGL+AT+ IRSFE+TG WD + +    Q +     S  S H K    R+PIIA
Sbjct: 858  DVHMPEMDGLQATKHIRSFENTGCWDVSVKPEDNQMITDSTISSDSAHAKKQGQRVPIIA 917

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            MTAN+ +ES+EEC A GMDS++SKPV FQ +KECL++Y 
Sbjct: 918  MTANSFAESSEECLAAGMDSYISKPVNFQNIKECLQRYL 956


>gi|115469290|ref|NP_001058244.1| Os06g0654300 [Oryza sativa Japonica Group]
 gi|113596284|dbj|BAF20158.1| Os06g0654300 [Oryza sativa Japonica Group]
          Length = 1067

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/998 (52%), Positives = 676/998 (67%), Gaps = 62/998 (6%)

Query: 20   SMWPEDIGS--DKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLELTNYTDKGSSQMAY 77
            SMWPE+IG    KQF +E+ G  QD LE+    +  + VD  RL+EL N ++KG SQM Y
Sbjct: 115  SMWPENIGDKHQKQFKMEKLGKDQDALEDANFQQKPSSVDLNRLMELAN-SEKGVSQMQY 173

Query: 78   LVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEGYGGDKRPISIMDE 137
             VKHWEY+++N  RLL+E++  L +QR+E E +K +ILEE +F++E Y   K  + I+DE
Sbjct: 174  FVKHWEYKRANTARLLKEQIGLLCQQRKEIEQRKQQILEEQQFQDESYYAVKWQVPILDE 233

Query: 138  L-SDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKMLEASGQREQALMEKL 196
            +  D WK    +KND +  ++ +++DAEYD++ YWK+RA+ LEK LEAS QRE++L EKL
Sbjct: 234  VYKDEWKRPS-KKNDDLSHNQELKIDAEYDSISYWKERAMQLEKTLEASLQRERSLEEKL 292

Query: 197  NESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHE 256
             E++ NL+  + PVEE S +LKRAD FLH VLQ+AP+V+ HQD +LRYRFI+NHFP+L +
Sbjct: 293  EENIKNLQSHT-PVEEFSGMLKRADYFLHLVLQSAPIVIAHQDADLRYRFIFNHFPTLAD 351

Query: 257  EDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSK 316
            ED++GKTD EI SG G++E  + K+EV+  G   KRE  F T LFG+KTF+ Y+EPVFSK
Sbjct: 352  EDVIGKTDYEILSGEGIEEMNNVKKEVMASGKATKREFVFNTPLFGAKTFVTYIEPVFSK 411

Query: 317  SGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLAT 376
            SGETIGVNY+ MD+TDQV +REKMA +R   AVQKAKETEL+K++HITEETMRAKQMLAT
Sbjct: 412  SGETIGVNYVAMDITDQVTRREKMADIRVREAVQKAKETELSKSLHITEETMRAKQMLAT 471

Query: 377  MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
            MSHEIRSPL+GV+SMAEIL+ TKLD+EQ QLL VM+SSGDLVLQLINDILDLSKVESG M
Sbjct: 472  MSHEIRSPLSGVLSMAEILATTKLDKEQYQLLEVMLSSGDLVLQLINDILDLSKVESGAM 531

Query: 437  KLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA 496
            KLEA  FRPREVVKHVLQTAAASL+K L+LEG I D+VP+EV GDVLRIRQILTNLISNA
Sbjct: 532  KLEATTFRPREVVKHVLQTAAASLKKELILEGCIGDNVPLEVTGDVLRIRQILTNLISNA 591

Query: 497  IKFTPEGKVGIKLYVVPE--PPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGF 554
            +KFT EGKVGI L+V+ +  P    EG +  SKA+ +        +H   S    D +  
Sbjct: 592  VKFTHEGKVGINLHVLDKQLPGCRIEGGQLHSKAHSAPA---AAAEHFSASPRKCDNDTL 648

Query: 555  HDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRK 614
                   G  +H+     G P +       + +  VW+RCDVYDTGIGIPE +LP LF++
Sbjct: 649  -------GCSNHEDACQTGIPSNDNFGEHHEGDEVVWLRCDVYDTGIGIPEKSLPLLFKR 701

Query: 615  YMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENS 674
            YMQ S DHARKYGGTGLGLAICKQLVELMGG LTV SK + GSTF+F+LP ++   E++S
Sbjct: 702  YMQASDDHARKYGGTGLGLAICKQLVELMGGTLTVVSKENEGSTFSFVLPCKIPVKEDHS 761

Query: 675  DDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVN 734
            DDPDD+   +  D  T D+  G F F+P+    L +S  +  +   L     F       
Sbjct: 762  DDPDDMPS-SGGDFTTSDI-EGSFIFKPQARPYLLTSGVSVMNNTKLIGGNQF------- 812

Query: 735  GFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSR-GKQC 793
                  Y  P  N  ++  P  +   +AE   T S   +  S+ P       VSR  K+ 
Sbjct: 813  ------YDPP--NILEDRKPFSNGFVLAEDHSTNSASTAHQSNGP------SVSRTNKEQ 858

Query: 794  HVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPE 853
            H        N   E  S S  +   + +   ++ +  C + E+     +S  S S+    
Sbjct: 859  HDNAMVIELNRQAERVSSSRGDTTSV-SGLIHDERGPCRVHEEKSLHKKSKCSPSSN--- 914

Query: 854  TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCM 913
                 K KILLVEDNK+N+MVAKSM++QLGH ID+VNNG+EA+ A+Q + YD+ILMDV M
Sbjct: 915  -----KAKILLVEDNKVNIMVAKSMLEQLGHGIDIVNNGLEAIRAIQKRQYDIILMDVHM 969

Query: 914  PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN-----HF----KRIPIIAMT 964
            P MDGL+AT+ IRSFE+TG WD + +   +Q +  +GS N     H     KR+PIIAMT
Sbjct: 970  PEMDGLQATKFIRSFENTGCWDTSVKPEHDQII--AGSDNLSDCAHMKKQGKRVPIIAMT 1027

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            AN+ SESAEEC A GMDS++SKPV FQ +KECL+QY P
Sbjct: 1028 ANSFSESAEECLAAGMDSYISKPVNFQNIKECLQQYLP 1065


>gi|357117236|ref|XP_003560378.1| PREDICTED: histidine kinase 5-like [Brachypodium distachyon]
          Length = 1081

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/997 (51%), Positives = 662/997 (66%), Gaps = 59/997 (5%)

Query: 19   PSMWPEDIGS--DKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLELTNYTDKGSSQMA 76
            PSMWPE+IG    KQF +E  G   D L++V   +     D  RL E+ N ++KG+SQM 
Sbjct: 127  PSMWPENIGDKHQKQFRMENLGKDHDALKDVKFSQRPVRGDVHRLTEMAN-SEKGTSQMQ 185

Query: 77   YLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEGYGGDKRPISIMD 136
            Y +KHWEY+++N  RLL EEL  LS+QR+E E KK +ILEE RF++E Y   KR + I+D
Sbjct: 186  YFMKHWEYKRANNARLLNEELGRLSQQRKEIEQKKQQILEEQRFQDENYYAAKRQVPILD 245

Query: 137  EL-SDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKMLEASGQREQALMEK 195
            E+  D WK    +K+D +  ++ +++DAEYDT+ YWK+RA+ L K L+AS QRE++L EK
Sbjct: 246  EVYKDEWKRPS-KKSDELSCNQELKIDAEYDTILYWKERAIQLGKALDASLQRERSLEEK 304

Query: 196  LNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLH 255
            L E + NL+  + PVEE S +L+RAD FLH VLQ+AP+V+ HQD +LRYRFI+NHFP+L 
Sbjct: 305  LEEDIKNLQSHT-PVEEFSGMLERADYFLHLVLQSAPIVIAHQDADLRYRFIFNHFPTLA 363

Query: 256  EEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFS 315
            +ED++GKTD EI SG G+ E  + KREV+ KG+  KRE  F T LFG KTF+ Y+EPVFS
Sbjct: 364  DEDVIGKTDHEILSGEGIDEMNNVKREVMAKGVATKREFVFNTPLFGEKTFVTYIEPVFS 423

Query: 316  KSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLA 375
            KS ETIGVNY+ MD+TDQV+ REKMA +R   A+QKAKETEL++++HITEETMRAKQMLA
Sbjct: 424  KSAETIGVNYVAMDITDQVKTREKMADIRVREAIQKAKETELSRSLHITEETMRAKQMLA 483

Query: 376  TMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGV 435
            TMSHEIRSPL+GV+SMAEIL+ TKLD+EQ QLL VM+SSGDLVLQLINDILDLSKVESG 
Sbjct: 484  TMSHEIRSPLSGVLSMAEILATTKLDKEQYQLLEVMLSSGDLVLQLINDILDLSKVESGA 543

Query: 436  MKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
            MKLEA  FRPREVVKHVLQTAAASL+K L LEG I DDVP+EVIGDVLRIRQILTNLISN
Sbjct: 544  MKLEATTFRPREVVKHVLQTAAASLKKELTLEGCIGDDVPLEVIGDVLRIRQILTNLISN 603

Query: 496  AIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFH 555
            A+KFT EGKVGI L +V +P    E               ++   H     T   +N   
Sbjct: 604  AVKFTHEGKVGINLRLVDKPQVGCE----------IEAGELRMRAHPASPITTDAENSIA 653

Query: 556  DKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLE-----ATVWIRCDVYDTGIGIPENALPT 610
              +H +  +D     +      +G + +E+         VW+RCDVYDTGIGIPE +LP 
Sbjct: 654  SPRHSD--KDTLRCSNREDACQNGIASNENFREYHEGEVVWLRCDVYDTGIGIPEKSLPF 711

Query: 611  LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
            LF++YMQ S DHARKYGGTGLGLAICKQLVELMGG LTV S  + GSTFTF++P ++   
Sbjct: 712  LFKRYMQASTDHARKYGGTGLGLAICKQLVELMGGTLTVVSNENEGSTFTFVMPCKIPVK 771

Query: 671  EENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASA 730
            EE+SD PDD+ +  +  + TD    GFF F+P+   SL  S     + K+          
Sbjct: 772  EEHSDGPDDMPNSRNDFTTTD--IEGFFVFKPKVRHSLLFSGVPMMNNKM---------- 819

Query: 731  HKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRG 790
                 F      +   N  ++   L +     +       P +S S+ P   +  E    
Sbjct: 820  -----FGSKLMCYDPANILEDPKMLTNGFGPMKENSGKRSPAASQSNGPSVGSIDEEQLD 874

Query: 791  KQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAE 850
                +E      N   E  S S A+   +  +  +E +K C+  E+         + + +
Sbjct: 875  GSMALEV-----NSQAERVSSSRADAVSVSGAGIHEGRKACKALEE--------KTLNKK 921

Query: 851  VPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMD 910
               +    K KILLVEDNK+N++VAKSM++ LGH ID+VNNGVEA+ AVQ + YDLILMD
Sbjct: 922  SKCSPSSSKAKILLVEDNKVNIIVAKSMLEPLGHGIDIVNNGVEAIRAVQQRQYDLILMD 981

Query: 911  VCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF------KRIPIIAMT 964
            V MPVMDGL+ATRLIRSFE+TG WDA+ +    Q + ++  S+        KR+PIIAMT
Sbjct: 982  VHMPVMDGLQATRLIRSFENTGCWDASVKPLDSQMIANTAISSDCAQERKEKRVPIIAMT 1041

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            AN+ +ESA+EC A GMDS++SKP+ FQK KECL++Y 
Sbjct: 1042 ANSFAESADECLAAGMDSYISKPMNFQKTKECLQRYL 1078


>gi|413955005|gb|AFW87654.1| hypothetical protein ZEAMMB73_662214 [Zea mays]
          Length = 963

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1018 (51%), Positives = 668/1018 (65%), Gaps = 79/1018 (7%)

Query: 5    METDLIEDMDIEGLPSMWPEDIGS--DKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLL 62
            M  D + + + E   SMWPE+IG    +QF +E+    QD  ++V   E    VDF+RL+
Sbjct: 1    MGDDYLAEPEDEVAQSMWPENIGDKHQRQFRMEKFRKDQDAFKDVKFDEKPVHVDFQRLM 60

Query: 63   ELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEE 122
            E+ N ++KG SQM Y +KHWEY+++NA RLL EEL  L +QR+E E  K +ILEE RF++
Sbjct: 61   EMAN-SEKGVSQMQYFMKHWEYKRANAARLLEEELGLLCQQRKEIEQNKQQILEEQRFQD 119

Query: 123  EGYGGDKRPISIMDEL-SDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKM 181
            E Y   KR + I+DE+  D WK    +KND + +S+   +DA++D+V YWK+RA  LE+ 
Sbjct: 120  ESYYAVKRHVPILDEVYEDEWKRP-SKKNDDLSRSRETNIDADHDSVSYWKERATKLEEK 178

Query: 182  LEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKE 241
            LE S QRE++L+EKL E++ NL+  + P EE S +LKRAD FLH VLQ+AP+V+ HQD +
Sbjct: 179  LEESIQRERSLVEKLEENIKNLQSHT-PAEEFSGMLKRADYFLHLVLQSAPIVIAHQDAD 237

Query: 242  LRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELF 301
            LRYRFI+NH+P+L +ED++GKTD EI SG G++E    KREV+  G+  KRE  F T +F
Sbjct: 238  LRYRFIFNHYPTLADEDVIGKTDYEILSGEGIEEMNSVKREVMASGIATKREFAFNTPMF 297

Query: 302  GSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTI 361
            G+KTF+ Y+EPVFSK GE IGVNY+ MD+TDQV++REKMA +R   AVQ AKETEL++++
Sbjct: 298  GAKTFVTYIEPVFSKGGEAIGVNYVAMDITDQVKRREKMADIRVREAVQNAKETELSRSL 357

Query: 362  HITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQL 421
            HITEETMRAKQMLATMSHEIRSPL+GV+SMAEIL+ TKLD+EQ QLL VM+SSGDLVLQL
Sbjct: 358  HITEETMRAKQMLATMSHEIRSPLSGVLSMAEILATTKLDKEQHQLLEVMLSSGDLVLQL 417

Query: 422  INDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGD 481
            INDILDLSKVESG MKLE+  FRPREVVKHVLQTAAASL+K L L G I DDVP+EVIGD
Sbjct: 418  INDILDLSKVESGAMKLESTTFRPREVVKHVLQTAAASLKKELTLVGCIGDDVPVEVIGD 477

Query: 482  VLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAK--EGLKQKSKAYQSATDAVKEE 539
            VLRIRQILTNLISNA+KFT EGKVGI L VV E       E  K   +AY        E 
Sbjct: 478  VLRIRQILTNLISNAVKFTHEGKVGINLQVVHEKQLGCKIEIGKIHKRAYSGTAITAAET 537

Query: 540  KHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDT 599
                 S    D++  H  KH + +Q+       G P       D + E  VW+RCDVYDT
Sbjct: 538  --AAVSTRNCDKDTLHCSKHEDAFQN-------GVPTCENFKEDIEGEEVVWLRCDVYDT 588

Query: 600  GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTF 659
            GIGIPE +LP LF++YMQ SADHARKYGGTGLGLAICKQLVELMGG LTV SK + GSTF
Sbjct: 589  GIGIPEKSLPLLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGTLTVVSKENEGSTF 648

Query: 660  TFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFS------SNG 713
            TF+LP ++   +E+SDDPD++   +  DS   D+   FF F+P+   SL S      +N 
Sbjct: 649  TFVLPCKIPVKDEHSDDPDEMHS-SQNDSANSDIEGSFF-FKPQMRASLLSPGVSIMNNT 706

Query: 714  TSRSKKLL---PNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE 770
                 KL+   P  I        NGFS T ++F +      TA   +  SV   AE    
Sbjct: 707  KLIGAKLMCYDPPDISHDRKLFSNGFSSTEHNFTNTC----TAHQPNGASVRSTAE---- 758

Query: 771  PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKI 830
                     EP+N   +    Q              E  S S  +   +  +      K+
Sbjct: 759  ---------EPDNAMVLELNSQ-------------AERVSSSRGDLVSVSGAAAC---KV 793

Query: 831  CEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVN 890
             E Q    +   SP  +           K KILLVEDNK+N++VAKSM++QLGH ID+VN
Sbjct: 794  LEEQSLHKKPKCSPIGN-----------KAKILLVEDNKVNIIVAKSMLEQLGHGIDIVN 842

Query: 891  NGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950
            NG++A+ AVQ   YDLILMDV MP MDGL+AT+ IR FE+TG WD + +    + +  S 
Sbjct: 843  NGMQAIRAVQQHQYDLILMDVHMPEMDGLQATKHIRYFENTGCWDVSVKPEDNRMITGSV 902

Query: 951  SSN---HFK----RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             S+   H K    R+PIIAMTAN+ +ES+EEC A GMDS++SKPV FQ +KECL++Y 
Sbjct: 903  ISSDCAHAKKQGQRVPIIAMTANSFAESSEECLAAGMDSYISKPVNFQNIKECLQRYL 960


>gi|51535054|dbj|BAD37425.1| putative histidine kinase 1 [Oryza sativa Japonica Group]
 gi|51535604|dbj|BAD37547.1| putative histidine kinase 1 [Oryza sativa Japonica Group]
          Length = 946

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/998 (50%), Positives = 654/998 (65%), Gaps = 84/998 (8%)

Query: 20   SMWPEDIGS--DKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLELTNYTDKGSSQMAY 77
            SMWPE+IG    KQF +E+ G  QD LE+    +  + VD  RL+EL N ++KG SQM Y
Sbjct: 16   SMWPENIGDKHQKQFKMEKLGKDQDALEDANFQQKPSSVDLNRLMELAN-SEKGVSQMQY 74

Query: 78   LVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEGYGGDKRPISIMDE 137
             VKHWEY+++N  RLL+E++  L +QR+E E +K +ILEE +F++E Y   K  + I+DE
Sbjct: 75   FVKHWEYKRANTARLLKEQIGLLCQQRKEIEQRKQQILEEQQFQDESYYAVKWQVPILDE 134

Query: 138  L-SDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKMLEASGQREQALMEKL 196
            +  D WK    +KND +  ++ +++DAEYD++ YWK+RA+ LEK LEAS QRE++L EKL
Sbjct: 135  VYKDEWKRPS-KKNDDLSHNQELKIDAEYDSISYWKERAMQLEKTLEASLQRERSLEEKL 193

Query: 197  NESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHE 256
             E++ NL+  + PVEE S +LKRAD FLH VLQ+AP+V+ HQD +LRYRFI+NHFP+L +
Sbjct: 194  EENIKNLQSHT-PVEEFSGMLKRADYFLHLVLQSAPIVIAHQDADLRYRFIFNHFPTLAD 252

Query: 257  EDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSK 316
            ED++GKTD EI SG G++E  + K+EV+  G   KRE  F T LFG+KTF+ Y+EPVFSK
Sbjct: 253  EDVIGKTDYEILSGEGIEEMNNVKKEVMASGKATKREFVFNTPLFGAKTFVTYIEPVFSK 312

Query: 317  SGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLAT 376
            SGETIGVNY+ MD+TDQV +REKMA +R   AVQKAKETEL+K++HI             
Sbjct: 313  SGETIGVNYVAMDITDQVTRREKMADIRVREAVQKAKETELSKSLHI------------- 359

Query: 377  MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
                     TGV+SMAEIL+ TKLD+EQ QLL VM+SSGDLVLQLINDILDLSKVESG M
Sbjct: 360  ---------TGVLSMAEILATTKLDKEQYQLLEVMLSSGDLVLQLINDILDLSKVESGAM 410

Query: 437  KLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA 496
            KLEA  FRPREVVKHVLQTAAASL+K L+LEG I D+VP+EV GDVLRIRQILTNLISNA
Sbjct: 411  KLEATTFRPREVVKHVLQTAAASLKKELILEGCIGDNVPLEVTGDVLRIRQILTNLISNA 470

Query: 497  IKFTPEGKVGIKLYVVPE--PPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGF 554
            +KFT EGKVGI L+V+ +  P    EG +  SKA+ +        +H   S    D +  
Sbjct: 471  VKFTHEGKVGINLHVLDKQLPGCRIEGGQLHSKAHSAPA---AAAEHFSASPRKCDNDTL 527

Query: 555  HDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRK 614
                   G  +H+     G P +       + +  VW+RCDVYDTGIGIPE +LP LF++
Sbjct: 528  -------GCSNHEDACQTGIPSNDNFGEHHEGDEVVWLRCDVYDTGIGIPEKSLPLLFKR 580

Query: 615  YMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENS 674
            YMQ S DHARKYGGTGLGLAICKQLVELMGG LTV SK + GSTF+F+LP ++   E++S
Sbjct: 581  YMQASDDHARKYGGTGLGLAICKQLVELMGGTLTVVSKENEGSTFSFVLPCKIPVKEDHS 640

Query: 675  DDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVN 734
            DDPDD+   +  D  T D+  G F F+P+    L +S  +  +   L     F       
Sbjct: 641  DDPDDMPS-SGGDFTTSDI-EGSFIFKPQARPYLLTSGVSVMNNTKLIGGNQF------- 691

Query: 735  GFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSR-GKQC 793
                  Y  P  N  ++  P  +   +AE   T S   +  S+ P       VSR  K+ 
Sbjct: 692  ------YDPP--NILEDRKPFSNGFVLAEDHSTNSASTAHQSNGP------SVSRTNKEQ 737

Query: 794  HVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPE 853
            H        N   E  S S  +   + +   ++ +  C + E+     +S  S S+    
Sbjct: 738  HDNAMVIELNRQAERVSSSRGDTTSV-SGLIHDERGPCRVHEEKSLHKKSKCSPSSN--- 793

Query: 854  TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCM 913
                 K KILLVEDNK+N+MVAKSM++QLGH ID+VNNG+EA+ A+Q + YD+ILMDV M
Sbjct: 794  -----KAKILLVEDNKVNIMVAKSMLEQLGHGIDIVNNGLEAIRAIQKRQYDIILMDVHM 848

Query: 914  PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN-----HF----KRIPIIAMT 964
            P MDGL+AT+ IRSFE+TG WD + +   +Q +  +GS N     H     KR+PIIAMT
Sbjct: 849  PEMDGLQATKFIRSFENTGCWDTSVKPEHDQII--AGSDNLSDCAHMKKQGKRVPIIAMT 906

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            AN+ SESAEEC A GMDS++SKPV FQ +KECL+QY P
Sbjct: 907  ANSFSESAEECLAAGMDSYISKPVNFQNIKECLQQYLP 944


>gi|297807097|ref|XP_002871432.1| hypothetical protein ARALYDRAFT_909023 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317269|gb|EFH47691.1| hypothetical protein ARALYDRAFT_909023 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 846

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/704 (64%), Positives = 530/704 (75%), Gaps = 78/704 (11%)

Query: 5   METDLIEDMDIEGLPSMWPEDIGS--DKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLL 62
           METD IE+MD+E L SMWPED+G+  DKQFNVE+P G  D L EVTI E  TI D  RL 
Sbjct: 1   METDQIEEMDVEVLSSMWPEDVGTEADKQFNVEKPAGDLDTLTEVTIEEKPTIADLTRLP 60

Query: 63  ELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEE 122
           EL N T +GSSQ+  LVK WEY Q NAVRLLREEL NL+RQR+E+E ++L+I+EE++FE 
Sbjct: 61  ELMNSTQQGSSQLTNLVKQWEYMQDNAVRLLREELKNLNRQREEAEAQELKIIEEYKFE- 119

Query: 123 EGYGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKML 182
                +   + ++DE SD ++    +K D            E+DTV YWK       KML
Sbjct: 120 ---SNEPENVPVLDETSDSFRRFRHKKRD------------EFDTVAYWKP------KML 158

Query: 183 EASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKEL 242
           EAS +RE+ L+EKL+ES+  +E QS+PV+EL+Q LK+A+ FLHF+LQNAP+VMGHQD +L
Sbjct: 159 EASTERERRLIEKLSESLKTMESQSAPVQELTQNLKKAEGFLHFILQNAPIVMGHQDIDL 218

Query: 243 RYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFG 302
           RY FIYN +PSL E+DILGKTDVEIF G G+KE QDFKREVLEKG  +KREITF T+LFG
Sbjct: 219 RYLFIYNKYPSLREQDILGKTDVEIFHGGGIKEYQDFKREVLEKGKASKREITFTTDLFG 278

Query: 303 SKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
           SKTFL+YVEPV++K+GE IG+NYMGM+VT+QV KREKMAKLRE+ AV+KA E+ELNKTIH
Sbjct: 279 SKTFLVYVEPVYNKAGEKIGINYMGMEVTEQVDKREKMAKLREDNAVRKAMESELNKTIH 338

Query: 363 ITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
           ITEETMRAKQMLATMSHEIRSPL+GVV MAEILS TKLD+EQRQLL VMISSGDLVLQLI
Sbjct: 339 ITEETMRAKQMLATMSHEIRSPLSGVVGMAEILSTTKLDKEQRQLLNVMISSGDLVLQLI 398

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDV 482
           NDILD+SKVESGVMKLEA KFRPREVVKHVLQTAAASL+K L LEG+IADDVPIEV+GDV
Sbjct: 399 NDILDISKVESGVMKLEATKFRPREVVKHVLQTAAASLKKSLTLEGNIADDVPIEVVGDV 458

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ 542
           LRIRQILTNLISNAIKFT EG VGIKL V+ EP FA++          +A +A  EE   
Sbjct: 459 LRIRQILTNLISNAIKFTHEGNVGIKLQVISEPSFARD----------NALNADTEE--- 505

Query: 543 PKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIG 602
                  +QNG                                 E +VWI CDV+DTGIG
Sbjct: 506 ------HEQNGL-------------------------------TETSVWICCDVWDTGIG 528

Query: 603 IP----ENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGST 658
           IP    +NA+P LF+KYMQ SADHARKYGGTGLGLAICKQLVELMGG+LTVTS+V+ GST
Sbjct: 529 IPGKQAKNAIPCLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVNEGST 588

Query: 659 FTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQP 702
           FTFILPY+V   ++ SDD D+ SDMAD  S  DD   G+FQF+P
Sbjct: 589 FTFILPYKVGTSDDYSDDQDEFSDMADHHSKPDDTAEGYFQFKP 632



 Score =  172 bits (437), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 88/165 (53%), Positives = 119/165 (72%), Gaps = 6/165 (3%)

Query: 5   METDLIEDMDIEGLPSMWPEDIGS--DKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLL 62
           +ETD IE+MD+E L SMWPED+G+  DKQFNVE+P G  D L+EVTI E  TI D  RL 
Sbjct: 633 LETDQIEEMDVEVLSSMWPEDVGTEADKQFNVEKPAGDLDTLKEVTIEEKLTIADLTRLP 692

Query: 63  ELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEE 122
           EL N T +GSSQ+  L+K WEY Q NAVRLLREEL NL+RQR+E+E K+L+I+EE++FE 
Sbjct: 693 ELLNSTPQGSSQLTNLMKQWEYMQHNAVRLLREELKNLNRQREEAEAKELKIIEEYKFE- 751

Query: 123 EGYGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDT 167
                +   +S++DE SD ++    +K DV+  SK++E+  E+D+
Sbjct: 752 ---SNEPENVSVLDETSDWFRGFRQKKRDVLVDSKKIEIYEEFDS 793


>gi|168043247|ref|XP_001774097.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp.
            patens]
 gi|162674643|gb|EDQ61149.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp.
            patens]
          Length = 975

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/1038 (45%), Positives = 627/1038 (60%), Gaps = 142/1038 (13%)

Query: 13   MDIEGLPSMWPED-----IGSDKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLELTNY 67
            +D++ +P +WPE      +   ++   +    G      V+  ++ T +D +   EL + 
Sbjct: 13   VDVQAMPGLWPESTQAVMLDRRRRHTTDLQAAGTTGRHVVS--KENTFIDSEHFKELLDR 70

Query: 68   TDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEGYGG 127
            +    SQ A L + +E RQ NAV LL+++L+ L+  R E+E ++++I+EE  +E     G
Sbjct: 71   SCSADSQQASLARLYEDRQDNAVNLLKQQLETLNSARLEAERRQIQIMEESYYEPMYNVG 130

Query: 128  DKRPISIMDELSDMWK----DVCPRKNDVVFQSKRVEVDAEYDT---VEYWKQRALDLEK 180
            D    S + E S  ++    D  P     +  S    V+ E D+    EYW+ RA    K
Sbjct: 131  DG---STLSEDSPRYEHFLGDDGPGSWSSIPGSDSCSVEMEGDSFGPAEYWRDRARGYAK 187

Query: 181  MLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDK 240
            +L  S +RE+ L+EKLNE  +       P+EE+   L R DNFL F L+ APVV+GHQD 
Sbjct: 188  LLTDSIRREEQLVEKLNEYASMPPPSWQPIEEIRTQLHRFDNFLRFSLRKAPVVIGHQDS 247

Query: 241  ELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETEL 300
            +LRYRFIYN FP+L EE+++GKTD+EI+SG+GV E  DFKREV+ KG P KREI+F T+L
Sbjct: 248  DLRYRFIYNAFPTLSEEEVIGKTDIEIYSGSGVAELMDFKREVMRKGWPEKREISFNTDL 307

Query: 301  FGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKT 360
            FG KTFLI VEPV S+SGE +G+NY+ MD+++QV KRE++++LREE+AVQKA E EL+KT
Sbjct: 308  FGEKTFLIAVEPVLSRSGEAMGLNYIAMDISEQVDKRERISRLREEVAVQKAMEAELHKT 367

Query: 361  IHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQ 420
            IHITEE MRAKQMLATMSHEIRSPL+GVVS+AE+L+ T+LD+EQRQL+ VM+SSGDLVLQ
Sbjct: 368  IHITEEAMRAKQMLATMSHEIRSPLSGVVSIAEVLATTQLDQEQRQLVDVMVSSGDLVLQ 427

Query: 421  LINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVI 479
            LINDILDLSKV+SG MK EA KFRPREVVKHVLQ A A++Q K L+LEG I DDVP+EVI
Sbjct: 428  LINDILDLSKVQSGAMKFEAKKFRPREVVKHVLQMALANMQSKDLILEGLIYDDVPLEVI 487

Query: 480  GDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEE 539
            GDVLRIRQ+LTNL+ NAIKFT EG V I + VVP PP + E   + S A +    AV   
Sbjct: 488  GDVLRIRQVLTNLVGNAIKFTHEGSVTISVRVVPPPPPSVERAAKNSIA-ECGELAV--- 543

Query: 540  KHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDT 599
                                GEG +D                        VW+ C+V D+
Sbjct: 544  --------------------GEGVED-----------------------AVWLLCEVSDS 560

Query: 600  GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTF 659
            GIGIPE+ALPTLF KY QVS  HARKYGGTGLGLAICK LVELMGG LTV SK + GSTF
Sbjct: 561  GIGIPESALPTLFEKYTQVSTAHARKYGGTGLGLAICKNLVELMGGNLTVLSKENHGSTF 620

Query: 660  TFILPYQVSPIEENSDD--PDDLSDMADQDSVTDDVT--------AGFFQFQPRTLG--- 706
            +F LP++V      S     D++ +M   ++ ++ V          G+F F  +      
Sbjct: 621  SFALPFRVDSGRSKSSGRLSDEVYEMMTNEAKSECVNERLVSTKKIGYFHFTSKVASLSP 680

Query: 707  --SLFSSNGTS------RSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDA 758
              SL  S G S      R K   P +IGF        F + S  F   + +   AP +  
Sbjct: 681  TPSLNPSPGPSPSRLSNRRKSTKPVAIGF--------FHDGSPEFMDVDSK---AP-DHM 728

Query: 759  CSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREM 818
              +  ++ T  + ++ F H             KQC V  +S    P+T            
Sbjct: 729  KYIPGLSMTQCQSQAPFVH-------------KQCMVGPSSRSHRPST------------ 763

Query: 819  IQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSM 878
                K   P+    +  K DR++   S     +   + + + +ILL EDNK+NVMVA+SM
Sbjct: 764  ----KVRLPKVQAGLARK-DRMTSESSVLPHSIHGIQHQRQSRILLAEDNKVNVMVAQSM 818

Query: 879  MKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938
            M++LGH ++VVNNG EA+ AV+  +YD+ILMDVCMPVMDGL+ATR IR +E TG+W+   
Sbjct: 819  MQRLGHKLEVVNNGAEAIEAVKRNSYDVILMDVCMPVMDGLEATRRIRRYEATGSWEELK 878

Query: 939  EAGIEQAMPSS--------------GSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984
            E  + ++  SS                S+  +R PIIAMTANAL+++  EC+ +GMDSFV
Sbjct: 879  EGDMNRSTESSSFEHCSRVNFDNAQSQSSTRQRTPIIAMTANALTDNMMECYMHGMDSFV 938

Query: 985  SKPVTFQKLKECLEQYFP 1002
            +KPVTF+KL+  L+Q+ P
Sbjct: 939  AKPVTFRKLEHVLKQFIP 956


>gi|168000947|ref|XP_001753177.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp.
            patens]
 gi|162695876|gb|EDQ82218.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp.
            patens]
          Length = 970

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1017 (44%), Positives = 606/1017 (59%), Gaps = 137/1017 (13%)

Query: 23   PEDIGSDKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLELTNYTDKGSSQMAYLVKHW 82
            P   GS  +   + P  G   + + + P++ T +D    +EL   +  G S +A L++ +
Sbjct: 17   PVTPGSGGRLTTDLPATGA--IGKQSFPKEGTFIDSDHFMELLERSGSGDSHLASLMRLY 74

Query: 83   EYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEGYGGDKRPISIMDELSDMW 142
            E RQ NAV LL+++L+ L+  R E+E ++ +I+EE+ +E     G+    S + E S  +
Sbjct: 75   EDRQVNAVNLLKQQLETLNSARLEAERRQTQIMEENFYEPMYAVGEG---STLSEDSPRY 131

Query: 143  K----DVCPRKNDVVFQSKRVEVDAEYDT---VEYWKQRALDLEKMLEASGQREQALMEK 195
            +    D  P     V  S    ++ E D+    EYW+ RA    K+L  S +RE+ L+EK
Sbjct: 132  EHYLGDDGPGSWSSVPGSDTCSLEMEGDSFGPAEYWRDRARSYAKLLTDSIRREEQLVEK 191

Query: 196  LNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLH 255
            LNE  +       P+EEL   L R DNFL F L+ AP+V+GHQD +LR+RFIYN FP+L 
Sbjct: 192  LNEYASMPPSNWQPIEELRTHLHRFDNFLRFSLRKAPIVIGHQDNDLRHRFIYNAFPTLS 251

Query: 256  EEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFS 315
            EE+++GKTD+EIF G+GV E  DFKREV+ KG P KREI F T+LFG KTFL+ VEPV S
Sbjct: 252  EEEVIGKTDLEIFRGSGVAEVMDFKREVIRKGRPEKREIHFNTDLFGEKTFLVAVEPVLS 311

Query: 316  KSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLA 375
            +SGE +G+NY+ MDV++QV KRE++++LRE++AVQKA E EL+KTIHITEE MRAKQMLA
Sbjct: 312  QSGEAMGINYVAMDVSEQVDKRERISRLREQVAVQKAMEAELHKTIHITEEAMRAKQMLA 371

Query: 376  TMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGV 435
            TMSHEIRSPL+GVVSMAE+L+ T+LD EQRQL+ VM+SSGDLVLQLINDILDLSKV+SG 
Sbjct: 372  TMSHEIRSPLSGVVSMAEVLATTQLDEEQRQLVDVMVSSGDLVLQLINDILDLSKVQSGA 431

Query: 436  MKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLIS 494
            MK EA KFRPREVVKHVLQ A A+ Q K L+LEG I DDVP+EVIGDVLRIRQ+ TNL+ 
Sbjct: 432  MKFEAKKFRPREVVKHVLQMALANTQSKNLILEGRIYDDVPLEVIGDVLRIRQVFTNLVG 491

Query: 495  NAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGF 554
            NAIKFT EG V I              ++       S   A K E        A D    
Sbjct: 492  NAIKFTHEGNVTIS-------------VRVVPPPPPSIERAAKNEP-------AVD---- 527

Query: 555  HDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRK 614
                  EG +D                       TVW+ C+V D+GIGIPE+ALPTLF K
Sbjct: 528  ------EGVED-----------------------TVWLLCEVSDSGIGIPESALPTLFEK 558

Query: 615  YMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENS 674
            Y QVSA HARKYGGTGLGLAICK LVELMGG LTV SK + GSTF+F LP +V P    S
Sbjct: 559  YTQVSATHARKYGGTGLGLAICKNLVELMGGNLTVVSKENHGSTFSFALPLRVHPERSMS 618

Query: 675  DD--PDDLSDMADQDSVTDDVT--------AGFFQFQPRT-----LGSLFSSNGTSRSKK 719
                 D++ +M  +++ T+ V          G++ F  +        S       SR   
Sbjct: 619  SGRLSDEVYEMMTKEARTEGVNDRLASSKMVGYYHFTSKVASKPPSPSSSPPISRSRCSS 678

Query: 720  LLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSP 779
            L P ++GF        F + S  F   + +        A    E    LS P    S SP
Sbjct: 679  LSPVALGF--------FQDGSPEFMDVDSK--------ALDRMEYIPGLSIPG---SQSP 719

Query: 780  EPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDR 839
             P     +  G              +      S+     IQ S+         +   P+R
Sbjct: 720  APPVSKHIIDGSS------------SRTPRPSSKVRMPKIQASQAK------NVGNSPER 761

Query: 840  ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
             +  P S+   + +     + +ILL EDNK+NVMVA+SMM++LGH ++VV+NG EA+ A+
Sbjct: 762  -TMPPHSAQGVLSQR----RSRILLAEDNKVNVMVAQSMMQRLGHKLEVVSNGAEAIEAL 816

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE---------AGIEQAMPSSG 950
            +  +YD+ILMDVCMPVMDGL+ATR IR +E TG+W+ + E         +  +++ P + 
Sbjct: 817  KRNSYDVILMDVCMPVMDGLEATRRIRRYEATGSWEDSKEGETIRNAESSSFQRSPPVNF 876

Query: 951  SSNHF-----KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            +S        +R PIIAMTANAL+++  EC+ +GMDSFV+KPVTF KL++ L+Q+ P
Sbjct: 877  TSTQSHSPMRQRTPIIAMTANALTDNMMECYMHGMDSFVAKPVTFMKLEQVLKQFVP 933


>gi|168014234|ref|XP_001759657.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp.
            patens]
 gi|162689196|gb|EDQ75569.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp.
            patens]
          Length = 927

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1003 (41%), Positives = 571/1003 (56%), Gaps = 109/1003 (10%)

Query: 20   SMWPED----IGSDKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLELTNYTDKGSSQM 75
            SMWP      + +DK+ ++ +P    + L E     D T  D +R  +L   +       
Sbjct: 8    SMWPATTQALMKTDKRRDLLQPTIDLEQLLE----RDNTFADEQRFEDLMRSSKTAIRHR 63

Query: 76   AYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEGYGGDKRPISIM 135
              LV+ W+  Q NAV LLRE+LD L ++R ESE KK EI++EH  E      D   + ++
Sbjct: 64   DSLVRMWKNHQVNAVGLLREQLDALQQRRFESERKKKEIIDEHAAECNFSCSDGDDV-ML 122

Query: 136  DELSDMWKDVCPRKNDVVFQS--KRVEVDAEY---DTVEYWKQRALDLEKMLEASGQREQ 190
            D +S     +C       + S        +EY   ++ +YW+++A  L+ +L  S +RE+
Sbjct: 123  DPVSIGEGFMCNSDAGSSWSSIPDSASSMSEYEGENSSDYWREKAKTLDTLLSESLKREE 182

Query: 191  ALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNH 250
             L  KL ++V   E  S  + EL Q  +R DNFL F ++ APVV GHQD ELRYRFI+N 
Sbjct: 183  LLTTKLQDAVA--EFPSGLMGELQQQFERFDNFLRFTVRKAPVVFGHQDTELRYRFIHNA 240

Query: 251  FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYV 310
            FP+L EE+++GKTD EI+ G GV E  +FKREV+   +P K+EI F T +FG KTF+I V
Sbjct: 241  FPTLTEEEVIGKTDEEIYQGMGVSELMEFKREVIRTKVPDKQEIKFNTNMFGCKTFMIAV 300

Query: 311  EPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRA 370
            EPV   +   +GVNY+ MDVT QV KREK+AK++ E AVQ A E+ELNKTI ITEE+MRA
Sbjct: 301  EPVLDMNDVCVGVNYVAMDVTLQVAKREKLAKIQAEDAVQAAMESELNKTIFITEESMRA 360

Query: 371  KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSK 430
            KQMLATM+HEIRSPL+GV+S A +L+ T L++EQ++ +  M SSG++VL+LINDILDLSK
Sbjct: 361  KQMLATMAHEIRSPLSGVISTASVLARTSLNQEQKRYVEFMTSSGNVVLKLINDILDLSK 420

Query: 431  VESGVMKLEAAKFRPREVVKHVLQTAAASL---QKILMLEGDIADDVPIEVIGDVLRIRQ 487
            VE+G M  E  KFRPREVVKHVLQ A+AS+   +K + LE D+++DVP+EV+GDVLRIRQ
Sbjct: 421  VEAGAMTFEEKKFRPREVVKHVLQMASASVAADKKTIHLETDVSEDVPLEVVGDVLRIRQ 480

Query: 488  ILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQT 547
            +LTNL+SNA+KFT EGKV I + VV                              P S T
Sbjct: 481  VLTNLVSNAVKFTHEGKVSIVVRVV-----------------------------GPPSHT 511

Query: 548  ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
            A D    H    G+                     DED +  +WI   + DTGIGI E A
Sbjct: 512  ARD----HTNAGGQ----------------EALVKDEDTKDMMWIEFYIVDTGIGISEGA 551

Query: 608  LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            +PTLF++Y Q S+ HARKYGGTGLGL ICKQL ELMGGR++V SK   GSTF+F LP + 
Sbjct: 552  IPTLFKRYAQASSTHARKYGGTGLGLHICKQLAELMGGRISVLSKEKEGSTFSFKLPLRT 611

Query: 668  SPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGF 727
               E    D  ++S ++        +        P T G      G  RSK+ L      
Sbjct: 612  DHKENMCTDAPEISRLSSSKPARKSL------LNPSTRG-----RGYRRSKQSLKPPFNT 660

Query: 728  ASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEV 787
             S      F +  Y     ++++E  P     S       LSE      H  +  +   +
Sbjct: 661  PSP---TNFDQLKYFTGFRSQKQEPHPTTAPTSAIVTKPVLSE---EIGHCLKSNSSRLL 714

Query: 788  -SRGKQCH--VETTSWF--QNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQ 842
             S+G   H   ++   F  ++PA      + ++ + IQ                  +   
Sbjct: 715  DSQGPPLHSCFKSIEGFDIEDPAKSDRRSNTSSTKNIQGGSVRY------------KTRS 762

Query: 843  SPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
            SP  S+          + KIL+ ED+ +NV VA  MM  LGH + VVNNG +AV AV+ +
Sbjct: 763  SPVISNV----VNNSRRFKILVAEDDPVNVKVAIQMMVALGHELKVVNNGADAVQAVKQE 818

Query: 903  NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA--GIEQAMPSSGSS-NHFKRIP 959
            +YD++LMDV MPVMDGL+ATR IR +E++ +     +     + A  +SG S    +RIP
Sbjct: 819  SYDVVLMDVHMPVMDGLEATRHIRMYEESCSSALINDTVRTHQGATAASGMSLQSIRRIP 878

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            IIAMTA+AL+++ +EC  NGMD+F++KPV  +KL+E L++Y P
Sbjct: 879  IIAMTADALTDNIQECAKNGMDNFIAKPVNIEKLEELLDEYVP 921


>gi|302808427|ref|XP_002985908.1| hypothetical protein SELMODRAFT_20384 [Selaginella moellendorffii]
 gi|300146415|gb|EFJ13085.1| hypothetical protein SELMODRAFT_20384 [Selaginella moellendorffii]
          Length = 796

 Score =  520 bits (1338), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 291/603 (48%), Positives = 380/603 (63%), Gaps = 53/603 (8%)

Query: 71  GSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEGYGGDKR 130
           G  Q++ L + WE   SNAV+LL+EE+++LS QR E+E K+  IL+E  F       D R
Sbjct: 1   GVGQLSGLARQWESSHSNAVQLLKEEMESLSSQRSEAESKRRRILDEESFYAAA-SRDNR 59

Query: 131 PI-----SIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKMLEAS 185
            +     ++ +++      V P              +   D VE+WK +A    ++L  S
Sbjct: 60  SVLRGSGTLEEQVKRQVSGVPPLVGRRGSFGLEEGGEGYGDQVEHWKSKAWKFNQLLGES 119

Query: 186 GQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYR 245
            QRE+ L++KL E    LE     V EL   L+R DNFLHFVL+NAP+ + HQDK+L+YR
Sbjct: 120 LQREEILIKKLEEKSKRLEAVKPMVTELQNQLERVDNFLHFVLRNAPIFLSHQDKDLKYR 179

Query: 246 FIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKT 305
           F+YN+ P+   E ++GKTD+E+  G G   + +FK+EVL +G PAKRE  ++T  FG K 
Sbjct: 180 FMYNNHPAWQSE-VIGKTDLELLPGPGGTMTHNFKKEVLRRGCPAKREFVYDTVEFGYKV 238

Query: 306 FLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITE 365
           FLI  EPVFSK G+TIGVN + MDVT++   REK+ +LREE AVQKA ET+L+KT+ IT 
Sbjct: 239 FLICAEPVFSKGGQTIGVNIVSMDVTEEAANREKLIRLREEEAVQKAMETQLHKTMRITG 298

Query: 366 ETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDI 425
           + +            IRSPL+GVVSMAEIL+ T LD EQ+ L+ +M+SSGDLV+QLINDI
Sbjct: 299 KLL------------IRSPLSGVVSMAEILAATNLDPEQQNLVDIMVSSGDLVMQLINDI 346

Query: 426 LDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKI-LMLEGDIADDVPIEVIGDVLR 484
           LDLSKVESG MKLEA KFRPREV+K+VLQ AAAS+QK  L LEG ++ +VP EVI DVLR
Sbjct: 347 LDLSKVESGAMKLEATKFRPREVLKNVLQIAAASMQKRDLNLEGFVSAEVPFEVIADVLR 406

Query: 485 IRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPK 544
           +RQILTNL+SNAIKFT +G V +++ +      + + L  K    Q+ +     E   P 
Sbjct: 407 VRQILTNLVSNAIKFTRQGSVRVEIEI------SNKKLPHK----QNGSIVDSNELQTPC 456

Query: 545 SQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIP 604
           S + +                      P  P    N        TVW+ C + DTGIGIP
Sbjct: 457 SSSITS----------------PATTTPTVPQWVNND-------TVWLECRIVDTGIGIP 493

Query: 605 ENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP 664
           + ALP LF KYMQVS  HARKYGGTGLGLAICKQLVELMGG+L V S+ + GSTF F LP
Sbjct: 494 DTALPFLFTKYMQVSETHARKYGGTGLGLAICKQLVELMGGKLKVNSEENKGSTFMFTLP 553

Query: 665 YQV 667
            ++
Sbjct: 554 CKL 556



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 73/153 (47%), Positives = 102/153 (66%), Gaps = 11/153 (7%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            K K+LL EDNK+N+MVA+SM++++G    VVN+G EAV A++   +DLILMDV MPVMDG
Sbjct: 645  KLKVLLAEDNKVNIMVAQSMLRRMGLEATVVNDGAEAVEAIKRDYFDLILMDVIMPVMDG 704

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF---------KRIPIIAMTANALS 969
            L+ATRLIR  +  GN D   +     A+     S+           + I   +MTANAL 
Sbjct: 705  LEATRLIR--DTQGNRDGQGKRSTIIAVSDHICSSFSIVRDKLFSDQSIAAFSMTANALP 762

Query: 970  ESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            E+  EC+ +GMDSF++KPVTF KL++ ++Q+FP
Sbjct: 763  ENVAECYTHGMDSFIAKPVTFSKLQQAIQQFFP 795


>gi|302806208|ref|XP_002984854.1| cytokinin independent 2 [Selaginella moellendorffii]
 gi|300147440|gb|EFJ14104.1| cytokinin independent 2 [Selaginella moellendorffii]
          Length = 853

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 300/654 (45%), Positives = 396/654 (60%), Gaps = 71/654 (10%)

Query: 21  MWPEDIGSDKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLELTNYTDKGSSQMAYLVK 80
           MWP D+  +K+ + ++P       + V++  +  I D   L  L   T+ G  Q++ L +
Sbjct: 1   MWPPDLNWEKRLS-QKP-------DNVSLAGEAGIADSSYLSSLVGSTNVGVGQLSGLAR 52

Query: 81  HWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEEEGYGGDKRPI-----SIM 135
            WE   SNAV+LL+EE+++LS QR E+E K+  IL+E  F       D R +     ++ 
Sbjct: 53  QWESSHSNAVQLLKEEMESLSSQRSEAESKRRRILDEESFYAAA-SRDNRSVLRGSGTLE 111

Query: 136 DELSDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKMLEASGQREQALMEK 195
           +++      V P              +   D VE+WK +A    ++L  S QRE+ L++K
Sbjct: 112 EQVKRQVSGVPPLVGRRGSFGLEEGGEGYGDQVEHWKSKAWKFNQLLGESLQREEILIKK 171

Query: 196 LNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLH 255
           L E    LE     V EL   L+R DNFLHFVL+NAP+ + HQDK+L+YRF+YN+ P+  
Sbjct: 172 LEEKSKRLEAVKPMVTELQNQLERVDNFLHFVLRNAPIFLSHQDKDLKYRFMYNNHPAWQ 231

Query: 256 EEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFS 315
            E ++GKTD+E+  G G   + +FK+EVL +G PAKRE  ++T  FG K FLI  EPVFS
Sbjct: 232 SE-VIGKTDLELLPGPGGTMTHNFKKEVLRRGCPAKREFVYDTVEFGYKVFLICAEPVFS 290

Query: 316 KSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLA 375
           K GETIGVN + MDVT++   REK+ +LREE AVQKA ET+L+KT+ IT           
Sbjct: 291 KGGETIGVNIVSMDVTEEAANREKLIRLREEEAVQKAMETQLHKTMRITG---------- 340

Query: 376 TMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGV 435
                      GVVSMAEIL+ T LD EQ+ L+ +M+SSGDLV+QLINDILDLSKVESG 
Sbjct: 341 ----------NGVVSMAEILAATNLDPEQQNLVDIMVSSGDLVMQLINDILDLSKVESGA 390

Query: 436 MKLEAAKFRPREVVKHVLQTAAASLQKI-LMLEGDIADDVPIEVIGDVLRIRQILTNLIS 494
           MKLEA KFRPREV+K+VLQ AAAS+QK  L LEG ++ +VP EVI DVLR+RQILTNL+S
Sbjct: 391 MKLEATKFRPREVLKNVLQIAAASMQKGDLNLEGFVSAEVPFEVIADVLRVRQILTNLVS 450

Query: 495 NAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGF 554
           NAIKFT  G V +++ +        + L  K    Q+ +     E   P S + +     
Sbjct: 451 NAIKFTRHGSVRVEIEI------GNKKLPHK----QNGSIVDSNELQTPCSSSIT----- 495

Query: 555 HDKKHGEGYQDHKHDDDPGTPVSH-GNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFR 613
                            P T  S     ++ D   TVW+ C + DTGIGIP+ ALP LF 
Sbjct: 496 ----------------SPATTTSTVPQWVNND---TVWLECRIVDTGIGIPDTALPFLFT 536

Query: 614 KYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
           KYMQVS  HARKYGGTGLGLAICKQLVELMGG+L V S+ + GSTF F LP ++
Sbjct: 537 KYMQVSETHARKYGGTGLGLAICKQLVELMGGKLKVNSEENKGSTFMFTLPCKL 590



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/152 (48%), Positives = 102/152 (67%), Gaps = 11/152 (7%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            K K+LL EDNK+N+MVA+SM++++G    VVN+G EAV A++   +DLILMDV MPVMDG
Sbjct: 683  KLKVLLAEDNKVNIMVAQSMLRRMGLEATVVNDGAEAVEAIKRDYFDLILMDVIMPVMDG 742

Query: 919  LKATRLIRSFEDTGNWDAAAE----AGIEQAMPSSGSSNHFK-----RIPIIAMTANALS 969
            L+ATRLIR  +  GN D   +      +   + SS S    K      I   +MTANAL 
Sbjct: 743  LEATRLIR--DTQGNRDGQGKRSTIIAVSDHICSSFSIVRDKLFSDQSIAAFSMTANALP 800

Query: 970  ESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            E+  EC+ +GMDSF++KPVTF KL++ ++Q+F
Sbjct: 801  ENVAECYTHGMDSFIAKPVTFSKLQQAIQQFF 832


>gi|168022997|ref|XP_001764025.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp.
            patens]
 gi|162684764|gb|EDQ71164.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens subsp.
            patens]
          Length = 725

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 300/803 (37%), Positives = 437/803 (54%), Gaps = 94/803 (11%)

Query: 215  QILKRADN---FLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEIFSGA 271
            ++L+R +N    L  VL++ PV++ H DKEL Y ++      +      GK D E+    
Sbjct: 1    EVLERTNNIELLLQMVLKDVPVIISHCDKELTYTYVNACVQGMK-----GKKDTELVGLV 55

Query: 272  -GVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDV 330
             G  E+   K+EVLE GL   +E+T   + FG +  ++  EP+ +K+GE +GV    MDV
Sbjct: 56   PGALETMRIKKEVLELGLAQGKELTISMDGFGKRWLVVACEPLRNKAGEILGVITACMDV 115

Query: 331  TDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVV 389
            T+Q   REK+A++REE+AV++A E EL + I + +E M AK + LA MSHEIR+PL GV 
Sbjct: 116  TEQALAREKLAQMREEMAVREATEKELRRAIRLADEAMEAKNRFLAVMSHEIRTPLNGVF 175

Query: 390  SMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449
             MA++L+ T LD EQR+L+  M+ S D++L +I+DILDLSKVE+G MKLE  +  PR++V
Sbjct: 176  GMAQVLATTPLDPEQRELVSAMVFSADVLLAIISDILDLSKVEAGTMKLEERELNPRDIV 235

Query: 450  KHVLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            KHV++TA AAS  + + ++ DIADDVP  V GD LRI+Q++TNL+ NA+KFT +G V ++
Sbjct: 236  KHVVRTAIAASKDRGITIQADIADDVPSMVYGDPLRIKQVITNLVFNAVKFTRKGHVKVR 295

Query: 509  LYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKH 568
            L                                                 H   +   + 
Sbjct: 296  L-------------------------------------------------HIAKFPIDER 306

Query: 569  DDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGG 628
            + D    VS   + D+ +    W++ ++ DTGIGIP+ ALPTLF K+  V +   RKYGG
Sbjct: 307  ETDVNLDVSDTKTSDQ-VSRDFWLKFEIEDTGIGIPKEALPTLFEKFTLVHSSTTRKYGG 365

Query: 629  TGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDS 688
            TGLGLAICKQLVELM G ++V SKV  GSTFTF +  +  P+   S  P  L        
Sbjct: 366  TGLGLAICKQLVELMDGHISVISKVGKGSTFTFTIRCKRPPVTSGSSGPSKLVSETKMKE 425

Query: 689  VTDDVTAGFFQFQ-----PRTLGSLFSSNGTSRS----KKLLPNSIGFASAHKVN-GFSE 738
                 TA   + Q     P    + F +   S++    +     ++  A +H++      
Sbjct: 426  NLSHSTANVHKLQAGMWNPTKQDTFFPNLQASQAHEDDRGTRRTTLIDAVSHRIPIKLPR 485

Query: 739  TSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETT 798
             S    + N    +  L D+   A + +     + S+SH+                    
Sbjct: 486  GSLKVRTTNDTDYSGFLGDSRVKARLWK-----QESYSHTA------------SWAAHQG 528

Query: 799  SWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKP 858
            +W +N   +       NR  ++ + +   +  C M    D  +  PS ++  V  T    
Sbjct: 529  AWKEN---DCRDRGGVNRGGLRRTSSGPSRIECLMMADLDHSNTFPSMTT--VAPTNDNK 583

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
             P +LL EDNK+NVMVA SM+K+LG S DV  NG+EA+ A+Q ++YDL+LMD+CMPV+DG
Sbjct: 584  LPSLLLAEDNKVNVMVALSMLKKLGLSADVACNGMEAIKALQGKHYDLVLMDICMPVLDG 643

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            L+ TR IR +E  G WD  +        P S ++   KRIPIIAMTANALS+  ++C A 
Sbjct: 644  LEVTRRIRRYEKLGYWDDESTLKPSGRNPDS-TAEKVKRIPIIAMTANALSDCEKQCSAT 702

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GMDSF++KPVTF+KLK+ L  + 
Sbjct: 703  GMDSFMTKPVTFKKLKDVLSLHL 725


>gi|167997011|ref|XP_001751212.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
 gi|162697193|gb|EDQ83529.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
          Length = 1108

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/511 (48%), Positives = 334/511 (65%), Gaps = 25/511 (4%)

Query: 20  SMWPED----IGSDKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLLELTNYTDKGSSQM 75
           SMWP      + +DK+  + +P    + L    +  D T +D ++  +L   +  G +  
Sbjct: 18  SMWPATTQALLKTDKRRQLLQPTIDLEQL----LDRDNTFIDQQKFEDLMKSSKAGKNHR 73

Query: 76  AYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFE--EEGYGGDKR--- 130
             L + W+  Q+NAV LLRE+LD+L ++R ESE KK EIL E   E       GD     
Sbjct: 74  ETLARIWKNHQANAVGLLREQLDSLQQRRIESERKKKEILHELTAECLASCPDGDDEMLD 133

Query: 131 PISIMDEL---SDMWKDVCPRKNDVVFQSKRVEVDAEYDTVEYWKQRALDLEKMLEASGQ 187
           P+SI +     SD+    C    D        EV+   D   YW+++A  L+ +L  S +
Sbjct: 134 PVSIGEGFMCNSDVASS-CSSVPDSASSLSDYEVENSSD---YWREKAKALDTLLSESLR 189

Query: 188 REQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFI 247
           RE+ L  KL  SV   E  S    EL Q  +R DNFL F L+ APVV  HQD ELRYRFI
Sbjct: 190 REELLCTKLQASVA--EFPSRLTGELQQQFERFDNFLRFTLRKAPVVCCHQDTELRYRFI 247

Query: 248 YNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFL 307
           +N FP+L EE+++GKTD EI+ G GV E  +FKREV+   +P K+EI F T +FG+KTFL
Sbjct: 248 HNAFPTLTEEEVIGKTDEEIYQGVGVAEVMEFKREVIRTKVPDKQEIKFNTNMFGNKTFL 307

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEET 367
           + VEPV   +   +GVN + +DVT QV KREK+ K+R+E AVQ A E+ELNKTI ITEE 
Sbjct: 308 VAVEPVLDINDVCVGVNCVAVDVTLQVAKREKLEKIRDEEAVQIAMESELNKTIRITEEN 367

Query: 368 MRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           MRAKQMLATM+HEIRSPL+GV+SMA +L+ T L  +Q++ +  M++SG++VL+LINDILD
Sbjct: 368 MRAKQMLATMAHEIRSPLSGVISMASVLARTPLSEDQKRYVEFMMTSGNVVLELINDILD 427

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ---KILMLEGDIADDVPIEVIGDVLR 484
           +SKVE+G M  E  KFRPREVV+HVLQ A+AS++   K L LE D++++VP+EV+GDVLR
Sbjct: 428 ISKVEAGAMTFEEKKFRPREVVRHVLQMASASVEANDKTLKLETDVSENVPLEVVGDVLR 487

Query: 485 IRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
           IRQ+LTNL+SN+IKFT EGKV I + VV  P
Sbjct: 488 IRQVLTNLVSNSIKFTHEGKVSIVVRVVGPP 518



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 153/450 (34%), Positives = 238/450 (52%), Gaps = 37/450 (8%)

Query: 579  GNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQ 638
            G++  +DLE ++WI   + DTGIGI ++A+PTLFR+Y Q S+ HAR+YGGTGLGL ICKQ
Sbjct: 662  GSNKYKDLEDSMWIEFRIVDTGIGISDSAIPTLFRRYSQASSTHAREYGGTGLGLHICKQ 721

Query: 639  LVELMGGRLTVTSKVHCGSTFTFILPYQV------SPIEENSDDPDDLSDMADQDSVTDD 692
            LVELMGG ++V+SK + GSTF+F LP +       SPI  +  DP+ + +    D++  +
Sbjct: 722  LVELMGGSISVSSKENGGSTFSFKLPLRAVEHLPSSPI--SGGDPERMIEQDHMDNMCAE 779

Query: 693  VTAGFFQFQPRTLGS-----LFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNN 747
            +     QF            L +     R  +  P    F +   +N   E S +    +
Sbjct: 780  MPES-LQFNSEKPAQHHHPYLSTRGNVPRGLQQYPKP-AFNTLLPMNSDHEKSSTAFLRD 837

Query: 748  RQKETAPLEDACSV-AEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPAT 806
            +++  + +E   +V A++ +          HS    +    S    C V T  +  + +T
Sbjct: 838  KRELHSTMEPTSAVEAKLVQFEGYGNCRGPHSSALLDGQGASLRASCGVFTCPFDGDEST 897

Query: 807  ESTSHSEANR-----------EMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETK 855
            +S   S A+            +M   S+    +K  +   +  R    PS + + V    
Sbjct: 898  KSCHRSNASSAKRFHGGPVPYKMRSPSRQGNSRKFVKAH-RNKRAGCEPSPAFSNV---- 952

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
             + +  IL+ ED+ +NV     M+  LGH + VVNNG +AV AVQ  +YD++LMDV MPV
Sbjct: 953  ARKRLSILVAEDDPVNVKCTTQMLLTLGHELKVVNNGTDAVQAVQQGSYDVVLMDVHMPV 1012

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN----HFKRIPIIAMTANALSES 971
            MDGLKA +LIR +E+  +  A+    I+    ++ +S+      +R+PIIAMTA+AL+++
Sbjct: 1013 MDGLKAAQLIRMYEENCS-SASINDPIQTQQGAAAASDMGPQRMRRVPIIAMTADALTKN 1071

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             +EC   GMD  ++KPV    L+E L QY 
Sbjct: 1072 IQECVKYGMDDLITKPVNVGMLEELLNQYL 1101


>gi|124257897|gb|ABM92929.1| histidine kinase [Hordeum vulgare subsp. vulgare]
          Length = 280

 Score =  266 bits (679), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 151/281 (53%), Positives = 195/281 (69%), Gaps = 21/281 (7%)

Query: 388 VVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447
           V+ +AE+L+ TKLD+EQ QLL +M+SSG++V Q I+ IL LSKVESGV+KL++A FRPRE
Sbjct: 8   VLRIAELLATTKLDQEQHQLLELMLSSGNVVFQSIDGILGLSKVESGVIKLQSAIFRPRE 67

Query: 448 VVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLI--SNAIKFTPEGKV 505
           VV+HVLQTA+  ++K L LEG I DDVP EVIGD L+I++ILTNLI  SNA+KFT +GKV
Sbjct: 68  VVEHVLQTASLFMKKELTLEGRIGDDVPSEVIGDALKIQEILTNLINFSNAVKFTQDGKV 127

Query: 506 GIKLYVVPEPPFAKEGLKQKSKAYQ--SATDAVKEEKHQPKSQTASDQNGFHDKKHGEGY 563
           GI L VV      K+ L+ + +  +  SA+    E ++ P S   SD++      H E +
Sbjct: 128 GINLNVVD-----KQQLECQIEHIRPHSASPINTETEYYPASSKISDKDTLRCSNHEEAH 182

Query: 564 QDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHA 623
           Q+       G P S+ NS  E     VW+  DVYDTGIGIPE +LP LF++YM  +  H 
Sbjct: 183 QN-------GIP-SNENSTGE----AVWLCFDVYDTGIGIPEKSLPFLFKRYMHANEKHT 230

Query: 624 RKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP 664
            KYGGTGLGLA+CKQLV+LMGG LTV SK + GSTFT + P
Sbjct: 231 TKYGGTGLGLAVCKQLVDLMGGTLTVLSKENEGSTFTVMFP 271


>gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1564

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 209/639 (32%), Positives = 298/639 (46%), Gaps = 125/639 (19%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            + LATMSHEIR+P+  V+ M  +L NT LD +QR  +  + SSGD +L LINDILD SK+
Sbjct: 1032 EFLATMSHEIRTPMNAVIGMTGLLLNTTLDNQQRDFVETIRSSGDALLTLINDILDFSKI 1091

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
            E+G ++ E   F  R  ++  L+  A  ++ K L L        P  ++GDV R+RQIL 
Sbjct: 1092 EAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELAYLFDPSTPNHIVGDVTRLRQILV 1151

Query: 491  NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
            NL++N +KFT +G+V I  YV                  Q  TD    +  QP  +T S 
Sbjct: 1152 NLLTNGVKFTEQGEVVI--YV------------------QDITDT---DITQP--ETTSQ 1186

Query: 551  QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
            +  F D       Q+ +                        I+ +V D+GIGIP + +  
Sbjct: 1187 RKNFTD------IQNQRR----------------------LIQFEVRDSGIGIPADRMDR 1218

Query: 611  LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
            LF+ + QV A   +KYGGTGLGLAIC+ L ++MGGR+ V SK   GS+F F +   V+P 
Sbjct: 1219 LFKSFSQVDASTTKKYGGTGLGLAICRSLSQMMGGRIWVESKAGVGSSFFFTIAVPVAPE 1278

Query: 671  EENS-DDPDDLSDMADQDSVTDD--VTAGFFQFQPRTLG-SLFSSNGTSRSKKLLPNSIG 726
             EN+ D    L D   Q  V DD          Q +T G  + + +G + +  LL     
Sbjct: 1279 GENTLDQSQQLLD-GKQLLVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEALALLE---- 1333

Query: 727  FASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSP----EPE 782
                      S++ +     + Q    P  D   +A     L + +    H P       
Sbjct: 1334 ----------SDSKFDLAILDMQ---MPEMDGVELARHIRQLDQRK----HLPLVMLSSL 1376

Query: 783  NETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQ 842
             + E+ + KQ              E    +  N+ + Q+   +   +I E Q    R+  
Sbjct: 1377 GQDEIIKHKQ--------------EIQFSAILNKPIQQSYLYDALAEIFEGQ----RVQV 1418

Query: 843  SPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
             P+  S    E +  P  +ILL ED  +N  VA  ++KQLG+  DV NNG E + A+  Q
Sbjct: 1419 KPTVPSPVNTEEQGDPSLQILLAEDIVVNQKVALLILKQLGYRADVANNGEEVLEALHRQ 1478

Query: 903  NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
            +YD++LMDV MP MDGL A R I     T  W        E+  P            IIA
Sbjct: 1479 SYDVVLMDVQMPEMDGLTAARHI-----TEQWQ-------EEEQPY-----------IIA 1515

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            +TANA+    E C A GM  +VSKP+   +LK   E+YF
Sbjct: 1516 LTANAMQGDREMCMAAGMHDYVSKPIRVDELKSAFERYF 1554


>gi|359459602|ref|ZP_09248165.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris sp. CCMEE 5410]
          Length = 1582

 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 206/639 (32%), Positives = 297/639 (46%), Gaps = 125/639 (19%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            + LATMSHEIR+P+  V+ M  +L NT LD +QR  +  + SSGD +L LINDILD SK+
Sbjct: 1050 EFLATMSHEIRTPMNAVIGMTGLLLNTTLDNQQRDFVETIRSSGDALLTLINDILDFSKI 1109

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
            E+G ++ E   F  R  ++  L+  A  ++ K L L        P  ++GDV R+RQIL 
Sbjct: 1110 EAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELAYLFDPSTPNHIVGDVTRLRQILV 1169

Query: 491  NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
            NL++N +KFT +G+V I  YV                  Q  TD    +  QP  +T   
Sbjct: 1170 NLLTNGVKFTEQGEVVI--YV------------------QDITDT---DIAQP--ETTPQ 1204

Query: 551  QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
            +  F D       Q+ +                        ++ +V D+GIGIP + +  
Sbjct: 1205 RKNFTD------IQNQRR----------------------LVQFEVRDSGIGIPADRMDR 1236

Query: 611  LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
            LF+ + QV A   +KYGGTGLGLAIC+ L ++MGGR+ V SK   GS+F F +   V+P 
Sbjct: 1237 LFKSFSQVDASTTKKYGGTGLGLAICRSLSQMMGGRIWVESKAGVGSSFFFTIAVPVAPE 1296

Query: 671  EENS-DDPDDLSDMADQDSVTDD--VTAGFFQFQPRTLG-SLFSSNGTSRSKKLLPNSIG 726
             EN+ D    L D   Q  V DD          Q +T G  + + +G + +  LL     
Sbjct: 1297 GENTLDQSQQLLD-GKQLLVVDDNPTNRRILTLQAQTWGMGIQTVSGGAEALALLE---- 1351

Query: 727  FASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSP----EPE 782
                      S++ +     + Q    P  D   +A     L + +    H P       
Sbjct: 1352 ----------SDSKFDLAILDMQ---MPEMDGVELARHIRQLDQRK----HLPLVMLSSL 1394

Query: 783  NETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQ 842
             + E+ + KQ              E    +  N+ + Q+   +   +I E Q    R+  
Sbjct: 1395 GQDEIIKHKQ--------------EIQFSAILNKPIQQSYLYDALAEIFEGQ----RVQV 1436

Query: 843  SPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
             P+  S    E +  P  +ILL ED  +N  VA  ++KQLG+  DV NNG E + A+  Q
Sbjct: 1437 KPTVPSPANTEEQGDPSLQILLAEDIVVNQKVALLILKQLGYRADVANNGEEVLEALHRQ 1496

Query: 903  NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
            +YD++LMDV MP MDGL A R I+       W        E+  P            IIA
Sbjct: 1497 SYDVVLMDVQMPEMDGLTAARHIKE-----QWQ-------EEDQPY-----------IIA 1533

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            +TANA+    E C A GM  +VSKP+   +LK   E+YF
Sbjct: 1534 LTANAMQGDREMCMAAGMHDYVSKPIRVDELKSAFERYF 1572


>gi|168012312|ref|XP_001758846.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162689983|gb|EDQ76352.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 1192

 Score =  246 bits (627), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 132/306 (43%), Positives = 199/306 (65%), Gaps = 14/306 (4%)

Query: 215 QILKRADN---FLHFVLQNAPVVMGHQDKELRY---RFIYNHFPSLHEEDILGKTDVEIF 268
           ++L+R +N    L  VL++ PV++ H DKEL Y   +F+      +  E + GK D E+ 
Sbjct: 260 EVLERTNNIEILLQMVLKDVPVIISHCDKELIYTYVKFVDQPLTKVPPEGMKGKKDTELV 319

Query: 269 SG-AGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMG 327
               G  E+   K+EVLE GL   +E+T   + FG +  ++  EP+ +K+G  +GV    
Sbjct: 320 GLLPGALETMRIKKEVLESGLAQGKELTVSMDGFGKRWLVVACEPLRNKAGHVLGVITAC 379

Query: 328 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLT 386
           MDVT+Q   RE++A++REE+AV++A E EL + I + +E M AK + LA MSHEIR+PL 
Sbjct: 380 MDVTEQALARERLAQMREEMAVREATEKELRRAIRLADEAMEAKNRFLAVMSHEIRTPLN 439

Query: 387 GVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446
           GV+ MA++L+ T LD EQR+L+  M+ S D++L +I+DILDLSKVE+G MKLE  +  PR
Sbjct: 440 GVLGMAQVLATTPLDPEQRELVSAMVFSADVLLAIISDILDLSKVEAGTMKLEERELNPR 499

Query: 447 EVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           ++VKHV++TA  + + + + ++ DI DDVP  V GD LRI+Q+      NA+KFT  G V
Sbjct: 500 DIVKHVVRTAIVACKDRGITIQADIGDDVPSVVYGDPLRIKQVF-----NAVKFTRRGHV 554

Query: 506 GIKLYV 511
            ++L+V
Sbjct: 555 KVRLHV 560



 Score =  246 bits (627), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 164/434 (37%), Positives = 223/434 (51%), Gaps = 46/434 (10%)

Query: 591  WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
            W++ ++ DTGIGIP+ ALPTLF K+  V +   RKYGGTGLGLAICKQLVELM G ++V 
Sbjct: 700  WLKFEIEDTGIGIPKEALPTLFEKFTLVHSSTTRKYGGTGLGLAICKQLVELMDGHISVI 759

Query: 651  SKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFS 710
            SK   GSTFTF L  +  P+   S  P  +            +TA   + Q         
Sbjct: 760  SKEGKGSTFTFTLRCKSLPMTLGSPGPAKMVSETKMKENLSHLTANMHKLQA-------- 811

Query: 711  SNGTSRSKKLLPNSIGFASAHKVNGFSET---SYSFPSNNRQKETAPLEDACSVAEVAET 767
              G     KL  N + F S   ++    T   +    ++NR     P     S+      
Sbjct: 812  --GMWNPTKLETNFLNFQSYQGLDDDPVTRRIAVVDAASNRVPTKLP---RGSLKVRITN 866

Query: 768  LSEPESSFSHSPEPENETEVSRGKQCHVETTSW--FQNPATESTSHSEANREMIQTSKTN 825
             S+    F  S E     E    ++    T SW   Q    E+        +      ++
Sbjct: 867  DSDCSELFGSSLEKVRLWE----QELDSHTASWAAHQGLWKENGCRDRGGVDRGLRRTSS 922

Query: 826  EPQKI-CEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
             P +I C M    D     PS+S+  V     K  P +LL EDNK+NVMVA SM+K+LG 
Sbjct: 923  GPSRIECLMMADSDHSKSLPSTST--VSGANDKKLPSLLLAEDNKVNVMVALSMLKKLGL 980

Query: 885  SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA------ 938
            S DV +NG+EA+ A+Q ++YDL+LMD+CMPV+DGL+ TR IR +E+ G WD  +      
Sbjct: 981  SADVASNGMEAIKAMQTKHYDLVLMDICMPVLDGLEVTRRIRRYEELGYWDEESALKPSD 1040

Query: 939  ----EAGIEQAMPSSGSSNHF-----------KRIPIIAMTANALSESAEECFANGMDSF 983
                 +G  + +P   S   F           KR+PIIAMTANALS+  ++C A GMDSF
Sbjct: 1041 LYSDSSGAFEELPLKISRKGFPSFIRDGAEKVKRMPIIAMTANALSDCEKQCSATGMDSF 1100

Query: 984  VSKPVTFQKLKECL 997
            ++KPVTF+KLK+ L
Sbjct: 1101 MTKPVTFKKLKDVL 1114


>gi|428307527|ref|YP_007144352.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
 gi|428249062|gb|AFZ14842.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
          Length = 865

 Score =  232 bits (592), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 205/675 (30%), Positives = 298/675 (44%), Gaps = 137/675 (20%)

Query: 342  KLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
            +L   +A +KA ETEL       E T    + LATMSHEIR+P+ GV+ M E++ NTKL 
Sbjct: 158  ELELRLAAKKAVETELALREAALEATRAKSEFLATMSHEIRTPMNGVIGMTELMLNTKLT 217

Query: 402  REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASL 460
             +Q+  +  +  SG+ +L +INDILD SK+ES  ++LE   F     ++  L   A  + 
Sbjct: 218  SQQQHFVETIRHSGEALLTIINDILDFSKIESQKLELEKQPFNILNCLEESLDILAPKAA 277

Query: 461  QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKE 520
            +K L L   I  + P ++IGDV R+RQI+ NL+SNA+K                  F K+
Sbjct: 278  EKNLELAYIIQPNTPKKLIGDVTRLRQIIINLLSNAVK------------------FTKD 319

Query: 521  GLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGN 580
            G     +   S T                     H    GE  + + H            
Sbjct: 320  G-----EVLVSITS--------------------HQLPAGENIEQNPH------------ 342

Query: 581  SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
                 L+    ++  V DTGIGIP   +  LF+ + QV +   R+YGGTGLGLAI K+L 
Sbjct: 343  -----LKNCYELQFAVKDTGIGIPTERMDRLFQSFSQVDSSTTREYGGTGLGLAISKRLT 397

Query: 641  ELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQF 700
            ELMGGR+ V S V  GS F F +   ++P                  SV D   A     
Sbjct: 398  ELMGGRMWVESTVGQGSIFYFTI---IAP------------------SVADGSLAQENII 436

Query: 701  QPRTLGS---LFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLE- 756
             P+ +G    +   N T+R   +L         +  N  +E +    S  +  + A L+ 
Sbjct: 437  PPQLVGKQLLIVDDNATNREILMLQGQSWGMLTYAANSGAE-ALDLLSEGKSFDMAILDM 495

Query: 757  -----DACSVAEVAETLSE----PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATE 807
                 D  ++A     L +    P    S   + E  +EV       V+  ++   P  +
Sbjct: 496  QMPEMDGLTLAREIRGLPKGEKLPLVMLSSLGKLEIGSEVDA-----VKFAAFLYKPIKQ 550

Query: 808  STSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVED 867
            S   +  N  + Q     E +    +    D      S  + ++P        +ILL ED
Sbjct: 551  SQLFNTLNDILAQQPIKVETRNCASLHTSFD------SQLAKQLP-------LRILLAED 597

Query: 868  NKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRS 927
            N +N  VA   ++Q+G+  DV  NG+E + A+Q Q YD++LMDV MPVMDGL  TR I  
Sbjct: 598  NSVNQQVALYFLEQIGYLADVAANGLEVLEALQRQAYDVVLMDVQMPVMDGLATTRQI-- 655

Query: 928  FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987
                 N + A  A                R  IIAMTAN +    EEC   GMD ++SKP
Sbjct: 656  -----NAEYAPTA----------------RPRIIAMTANTMQGDKEECLQAGMDDYISKP 694

Query: 988  VTFQKLKECLEQYFP 1002
            +   +L + L +  P
Sbjct: 695  IQLAELYDALSKCQP 709


>gi|162459625|ref|NP_001104859.1| histidine kinase 1 [Zea mays]
 gi|12060392|dbj|BAB20583.1| histidine kinase 1 [Zea mays]
          Length = 974

 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 203/725 (28%), Positives = 329/725 (45%), Gaps = 108/725 (14%)

Query: 305 TFLIYVEPVFSKSGETIGVNYMGMD-VTDQVRKREKMAKLREEIAVQKAKETELNKTIHI 363
           TF+I++       G +I   Y   D VT+  RK E++    E   V K+           
Sbjct: 318 TFVIWM-----LLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKS----------- 361

Query: 364 TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
                   Q LAT SHEIR+P+ GV+ M ++L  T L   Q+         G  ++ LIN
Sbjct: 362 --------QFLATASHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLIN 413

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDV 482
           D+LD +K+E+G ++LEA  F  R ++  V+   ++ S +K + L   + D+VP  VIGD 
Sbjct: 414 DVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDP 473

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ 542
            R RQILTNL+ NA+KFT  G V +++ +      A+    + ++    A +        
Sbjct: 474 WRFRQILTNLVGNAVKFTERGHVFVRVCL------AENSNMEANQVLHGAMNGKGGRVES 527

Query: 543 PKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEA---------TVWIR 593
             +   +  +GF        +Q  K        +S   S+ +DLE+          V + 
Sbjct: 528 TANGAFNTLSGFEAADRRNSWQYFK------LLLSDKESLLDDLESENSNQSDSDRVTLA 581

Query: 594 CDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKV 653
             + DTG+GIP  A   +F  +MQ  +  +R YGGTG+GL+I K L ELMGG+++ TS  
Sbjct: 582 ISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHP 641

Query: 654 HCGSTFTFILPYQVSPIEENSDDPDDLSD------------MADQDSVTDDVTAGFFQFQ 701
             GSTFTF    + S  + + D    L++            + D   V   VT    ++ 
Sbjct: 642 SVGSTFTFSATLKHSHKDISGDSSRSLTEALPTAFKGMKAILVDGRPVRSAVT----RYH 697

Query: 702 PRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSV 761
            + LG L                        VN  +    +FP  N     A   +  S+
Sbjct: 698 LKRLGILL---------------------QVVNNMNAVVKAFPGQN---GAAGSREKASI 733

Query: 762 AEVAETLSEPESS---FSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREM 818
             +      PE+     +H  E +N  ++S G +  +  TS        S       + +
Sbjct: 734 LFIESDFWRPETDVQLLNHLREQKN-GQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPI 792

Query: 819 IQTSKTNEPQKI--CEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAK 876
             ++  +  Q++   E+ E+ D  ++     S  V +        IL+V+DNK+N+ VA 
Sbjct: 793 RASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGK-------NILVVDDNKVNLRVAA 845

Query: 877 SMMKQLGHSIDVVNNGVEAVHAVQ-CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
           + +K+ G ++  V +G +A+  +Q    +D   MDV MP MDG +AT  IR  E   N +
Sbjct: 846 AALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEE 905

Query: 936 AAAE-AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLK 994
              + A IE      GS+     +P++AMTA+ +  + EEC  +GMD +VSKP   ++L 
Sbjct: 906 RKNKLASIE------GSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLY 959

Query: 995 ECLEQ 999
           + + +
Sbjct: 960 QAVSR 964


>gi|162458665|ref|NP_001105857.1| histidine kinase [Zea mays]
 gi|89242031|dbj|BAE80686.1| histidine kinase [Zea mays]
          Length = 975

 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 210/730 (28%), Positives = 331/730 (45%), Gaps = 118/730 (16%)

Query: 305 TFLIYVEPVFSKSGETIGVNYMGMD-VTDQVRKREKMAKLREEIAVQKAKETELNKTIHI 363
           TF+I++       G +I   Y   D VT+  RK E++    E   V K+           
Sbjct: 319 TFVIWM-----LLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKS----------- 362

Query: 364 TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
                   Q LAT+SHEIR+P+ GV+ M ++L  T L   Q+         G  ++ LIN
Sbjct: 363 --------QFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLIN 414

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDV 482
           D+LD +K+E+G ++LEA  F  R ++  V+   ++ S +K + L   + D+VP +V+GD 
Sbjct: 415 DVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPKDVLGDP 474

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ 542
            R RQILTNL+ NA+KFT  G V +++ +               +A Q    A+  +  +
Sbjct: 475 WRFRQILTNLVGNAVKFTERGHVFVRVCLAD---------NSNMEAGQVLNGAMNGKDGR 525

Query: 543 PKSQTASDQN---GFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEAT---------V 590
             S T    N   GF        +Q  K        +S   S+ +DLE T         V
Sbjct: 526 VDSTTNGAFNTLSGFEAADRRNSWQYFK------MLLSDKESLLDDLEGTNSDQSDSDHV 579

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
            +   + DTG+GIP  A   +F  +MQ  +  +R YGGTG+GL+I K L ELMGG+++  
Sbjct: 580 TLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFV 639

Query: 651 SKVHCGSTFTFILPYQVSPIEENSDDPDDLSD------------MADQDSVTDDVTAGFF 698
           S+   GSTFTF    + S  + + D    LS+            + D   V   VT    
Sbjct: 640 SRPFVGSTFTFSTTLKRSYKDISVDSSRSLSEALPTAFKGMKAILIDGRPVRSAVT---- 695

Query: 699 QFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDA 758
           ++  + LG                      +   VN  S    +FP  N    T   E A
Sbjct: 696 RYHLKRLG---------------------ITVQAVNNMSAVVKAFPGQN--GATVSREKA 732

Query: 759 CSVAEVAETLSEPESS---FSHSPEPENETEVSRGKQCHVETTSWFQNPATES---TSHS 812
            ++  +      PE+     +H  E +N  ++S G +  +  TS        S       
Sbjct: 733 -TILFIESDFWRPETDVQLLNHLREHKNR-QLSDGHKVVLLVTSEADKDKYGSIFDIVMC 790

Query: 813 EANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINV 872
           +  R  +  S   +  K+ EM E+ D  ++     S  V +        IL+V+DNK+N+
Sbjct: 791 KPIRASMIASSIQQLLKV-EMPERRDNQNRPSFLRSLLVGK-------NILVVDDNKVNL 842

Query: 873 MVAKSMMKQLGHSIDVVNNGVEAVHAVQ---CQNYDLILMDVCMPVMDGLKATRLIRSFE 929
            VA + +K+ G ++  V +G +A+  +Q   C  +D   MDV MP MDG +ATR IR  E
Sbjct: 843 RVAAAALKKYGANVSCVESGKDAISLLQPPHC--FDACFMDVQMPEMDGFEATRQIRQTE 900

Query: 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVT 989
              N     E    + +   GS+     +P++AMTA+ +  + E+C  +GMD +VSKP  
Sbjct: 901 MRVN-----EERKNKLVLIEGSTFVEYHLPVLAMTADVIQATYEKCIKSGMDGYVSKPFD 955

Query: 990 FQKLKECLEQ 999
            ++L + + +
Sbjct: 956 EEQLYQAVSR 965


>gi|242066054|ref|XP_002454316.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
 gi|241934147|gb|EES07292.1| hypothetical protein SORBIDRAFT_04g028550 [Sorghum bicolor]
          Length = 973

 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 206/722 (28%), Positives = 326/722 (45%), Gaps = 123/722 (17%)

Query: 318 GETIGVNYMGMD-VTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLAT 376
           G +I   Y   D VT+  RK E++    E   V K+                   Q LAT
Sbjct: 325 GYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKS-------------------QFLAT 365

Query: 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
           +SHEIR+P+ GV+ M ++L  T L   Q+         G  ++ LIND+LD +K+E+G +
Sbjct: 366 VSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLINDVLDRAKIEAGKL 425

Query: 437 KLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
           +LEA  F  R ++  V+   ++ S +K + L   + DDVP  V+GD  R RQILTNL+ N
Sbjct: 426 ELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKVVLGDPWRFRQILTNLVGN 485

Query: 496 AIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQ-NGF 554
           A+KFT  G V +++ +        E    ++      T   K+ K +  +  A +  +GF
Sbjct: 486 AVKFTERGHVFVRVCLA-------ENSNMEANQVLHGTMNGKDGKVESTTNGAFNTLSGF 538

Query: 555 HDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEAT---------VWIRCDVYDTGIGIPE 605
                   +Q  K        +S+  S+ +DLE           V +   + DTG+GIP 
Sbjct: 539 EAADRRNSWQYFK------LLLSNKESLLDDLEGENSNLSDSDHVTLAISIEDTGVGIPL 592

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
            A   +F  +MQ  +  +R YGGTG+GL+I K L ELMGG+++ TS+   GSTFTF    
Sbjct: 593 QAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGSTFTFSATL 652

Query: 666 QVSPIEENSDDPDDLSD------------MADQDSVTDDVTAGFFQFQPRTLGSLFSSNG 713
           + S  + + D    LS+            + D   V   VT    ++  + LG +     
Sbjct: 653 KRSYKDISVDSSRSLSEALPTAFKGMKAILIDGRPVRSAVT----KYHLKRLGII----- 703

Query: 714 TSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPES 773
                              VN  S    +FP  N            +V+    T+   ES
Sbjct: 704 ----------------VQVVNNMSTVVKAFPGQN----------GATVSREKATMLFIES 737

Query: 774 SFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEM 833
            F     PE + ++    + H +       P       SEA+++       N       +
Sbjct: 738 DFWR---PETDVQLLNHLREH-KNGLLSDAPKVVLLVTSEADKD-------NYGSIFDIV 786

Query: 834 QEKPDRISQSPSSS----SAEVPETKP-KPKPKIL----------LVEDNKINVMVAKSM 878
             KP R S   SS       E+P+ K  + +P  L          +V+DNK+N+ VA + 
Sbjct: 787 MCKPIRASTIASSIQQLLKVEMPKRKENQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAA 846

Query: 879 MKQLGHSIDVVNNGVEAVHAVQ-CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937
           +K+ G ++  V +G +A+  +Q   ++    MDV MP MDG +ATR IR  E   N +  
Sbjct: 847 LKKYGANVSCVESGKDAISLLQPPHSFHACFMDVQMPEMDGFEATRQIRQMEMKANEERK 906

Query: 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
            +  + +A     S+    R+P++AMTA+ +  + EEC  +GMD +VSKP   ++L + +
Sbjct: 907 NKLSLTEA-----STFVEYRLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLCQVV 961

Query: 998 EQ 999
            +
Sbjct: 962 SR 963


>gi|224029415|gb|ACN33783.1| unknown [Zea mays]
 gi|413938768|gb|AFW73319.1| putative histidine kinase family protein [Zea mays]
          Length = 974

 Score =  225 bits (573), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 205/725 (28%), Positives = 330/725 (45%), Gaps = 108/725 (14%)

Query: 305 TFLIYVEPVFSKSGETIGVNYMGMD-VTDQVRKREKMAKLREEIAVQKAKETELNKTIHI 363
           TF+I++       G +I   Y   D VT+  RK E++    E   V K+           
Sbjct: 318 TFVIWM-----LLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKS----------- 361

Query: 364 TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
                   Q LAT+SHEIR+P+ GV+ M ++L  T L   Q+         G  ++ LIN
Sbjct: 362 --------QFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLIN 413

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDV 482
           D+LD +K+E+G ++LEA  F  R ++  V+   ++ S +K + L   + D+VP  VIGD 
Sbjct: 414 DVLDRAKIEAGKLELEAVPFDLRSLMDDVVSLFSSKSREKCIELAVFVCDNVPKVVIGDP 473

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ 542
            R RQILTNL+ NA+KFT  G V +++ +      A+    + ++    A +        
Sbjct: 474 WRFRQILTNLVGNAVKFTERGHVFVRVCL------AENSNVEANQVLHGAMNGKGGRVES 527

Query: 543 PKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEAT---------VWIR 593
             +   +  +GF        +Q  K        +S   S+ +DLE           V + 
Sbjct: 528 TTNGAFNTLSGFEAADRRNSWQYFK------LLLSDKESLLDDLEGENSNQSDSNHVTLA 581

Query: 594 CDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKV 653
             + DTG+GIP  A   +F  +MQ  +  +R YGGTG+GL+I K L ELMGG+++ TS  
Sbjct: 582 ISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSHP 641

Query: 654 HCGSTFTFILPYQVSPIEENSDDPDDLSD------------MADQDSVTDDVTAGFFQFQ 701
             GSTFTF    + S  + + D    L++            + D   V   VT    ++ 
Sbjct: 642 SVGSTFTFSATLKHSYKDISVDSSRSLTEALPTAFKGMKAILVDGRPVRSAVT----RYH 697

Query: 702 PRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSV 761
            + LG L                        VN  +    +FP  N    T   E A S+
Sbjct: 698 LKRLGILL---------------------QVVNNMNAVVKAFPGQN--GATGSREKA-SI 733

Query: 762 AEVAETLSEPESS---FSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREM 818
             +      PE+     +H  E +N  ++S G +  +  TS        S       + +
Sbjct: 734 LFIESDFWRPETDVQLLNHLREQKN-GQLSDGHKVVLLVTSEADKDKYGSIFDIVMCKPI 792

Query: 819 IQTSKTNEPQKI--CEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAK 876
             ++  +  Q++   E+ E+ D  ++     S  V +        IL+V+DNK+N+ VA 
Sbjct: 793 RASTIASSIQQLLKVEIAERKDNQNRPSFLRSLLVGK-------NILVVDDNKVNLRVAA 845

Query: 877 SMMKQLGHSIDVVNNGVEAVHAVQ-CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
           + +K+ G ++  V +G +A+  +Q    +D   MDV MP MDG +AT  IR  E   N +
Sbjct: 846 AALKKYGANVSCVESGKDAISLLQPPHRFDACFMDVQMPEMDGFEATGQIRQMELKANEE 905

Query: 936 AAAE-AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLK 994
              + A IE      GS+     +P++AMTA+ +  + EEC  +GMD +VSKP   ++L 
Sbjct: 906 RKNKLASIE------GSTTAEYHLPVLAMTADVIQATYEECIKSGMDGYVSKPFDEEQLY 959

Query: 995 ECLEQ 999
           + + +
Sbjct: 960 QAVSR 964


>gi|162456058|ref|YP_001618425.1| two-component hybrid histidine kinase [Sorangium cellulosum So
           ce56]
 gi|161166640|emb|CAN97945.1| two-component hybrid histidine kinase [Sorangium cellulosum So
           ce56]
          Length = 919

 Score =  224 bits (570), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 192/681 (28%), Positives = 306/681 (44%), Gaps = 113/681 (16%)

Query: 336 KREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEI 394
           +RE  A LR  +  ++A E EL +     E   RAK + LA++SHEIR+P+ G++ M  +
Sbjct: 146 EREHSASLRALLMQRQAVEEELQQAKEAAEAASRAKSEFLASVSHEIRTPMNGIIGMTSL 205

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
              T+L +EQR+ L ++  S D +L +IND+LD SK+E+G +++E   F P E++   ++
Sbjct: 206 ALQTELTQEQREYLEMVKISADALLSIINDVLDFSKIEAGKLEIEPVVFDPSEIIGDAVK 265

Query: 455 TAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
           T A  + +K L L  D+  DVP  ++GD LR+RQ+L NL+SNA+KFT  G+V ++  V  
Sbjct: 266 TLALRAHEKRLELAYDVGPDVPEALVGDPLRLRQVLVNLVSNAVKFTDAGEVVVRAEVDS 325

Query: 514 EPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPG 573
             P                          P+ + ++D  G      GE   D        
Sbjct: 326 RAPL------------------------TPEEEASADSQGTPSLYAGEVLGD-------- 353

Query: 574 TPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGL 633
                           V +R  V DTGIGI       +F  + Q      RKYGGTGLGL
Sbjct: 354 ---------------AVVLRVSVIDTGIGIAPEKQRVVFDAFAQADGSTTRKYGGTGLGL 398

Query: 634 AICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENS-----DDPDDLSDMADQDS 688
            IC +LVE+MGG++ + S+   GSTF F L  Q+  +E  +     + P DL  +  +  
Sbjct: 399 TICARLVEMMGGKIWIESEAGKGSTFHFTL--QLRALEGAARSRRLEIPKDL--LGTKVL 454

Query: 689 VTDD-VTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKV---NGFSETSYSFP 744
           + DD  TA       R L       G     K +P   G A+   +   +G     +  P
Sbjct: 455 IADDNATA------RRILADTIEGWGM----KAVPVDSGAAAIAALSEDSGVWALPWGKP 504

Query: 745 SNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNP 804
             N    ++    A   A +      P+       E   + E+ +G+   + ++      
Sbjct: 505 GGNAVGPSSSFGLAIVDARM------PKVDGFAVVEHCRKREILKGRVLMLLSS------ 552

Query: 805 ATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSS---SAEVPETKPKPKP- 860
            T + +     R++   +   +P K   +QE        P+ +   SA+     P P+  
Sbjct: 553 -TSAQADVARCRDLGVFAMVTKPVKTSHLQEAVFHAFGVPTRTSLRSADPRRAAPGPRAR 611

Query: 861 --KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
             ++L+ EDN IN  + +  +++ GH + +V NG  AV  +    YD+ L+DV MP MDG
Sbjct: 612 GLRVLVAEDNAINQKLMRRWLERQGHHVHIVENGRLAVEKIAGGQYDVALLDVEMPEMDG 671

Query: 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
           L+A                                H   +P+I +TA A+    E C   
Sbjct: 672 LQAA-------------------RVVRARERREGGH---MPLIVVTAYAMKGDRERCLRA 709

Query: 979 GMDSFVSKPVTFQKLKECLEQ 999
           G D +VSKPV  ++L + +++
Sbjct: 710 GFDGYVSKPVQVEELYDMIDR 730


>gi|451928653|pdb|4EUK|A Chain A, Crystal Structure
          Length = 153

 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 103/149 (69%), Positives = 124/149 (83%), Gaps = 10/149 (6%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            KPKILLVEDNKIN+MVAKSMMKQLGH++D+ NNGVEA+ A+   +YDL+LMDVCMPV+DG
Sbjct: 8    KPKILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINSSSYDLVLMDVCMPVLDG 67

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH------FKRIPIIAMTANALSESA 972
            LKATRLIRS+E+TGNW+AA EAG++     S S N         R+PIIAMTAN L+ES+
Sbjct: 68   LKATRLIRSYEETGNWNAAIEAGVD----ISTSENEQVCMRPTNRLPIIAMTANTLAESS 123

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            EEC+ANGMDSF+SKPVT QKL+ECL+QY 
Sbjct: 124  EECYANGMDSFISKPVTLQKLRECLQQYL 152


>gi|357138197|ref|XP_003570684.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
          Length = 970

 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 182/652 (27%), Positives = 298/652 (45%), Gaps = 73/652 (11%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L  T L   Q+         G  ++ LIND+LD +K+
Sbjct: 359 QFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDFAQTAQMCGRALITLINDVLDRAKI 418

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  V+   ++ S +K + L   + DDVP  V+GD  R RQILT
Sbjct: 419 EAGRLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKLVVGDPWRFRQILT 478

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ NA+KFT  G V +++ +            Q      +  D   E        T S 
Sbjct: 479 NLVGNAVKFTDRGHVFVRVCLAENSNVEA---NQVLNVTLNGKDGKVESTANGALNTLSG 535

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                ++   E ++    D +  +    G   +++    V +   + DTG+GIP +A   
Sbjct: 536 FQAADERNSWEYFKLLLSDKESLSNELEGEKSNQNDSDHVTLMISIEDTGVGIPLHAQDR 595

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
           +F  +MQ  +  +R YGGTG+GL+I K L  LMGG+++ TS+   GSTFTF    + S  
Sbjct: 596 VFTPFMQADSSTSRNYGGTGIGLSISKCLAGLMGGQISFTSRPSIGSTFTFSAVVKRSCK 655

Query: 671 EENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASA 730
           + +SD          + S+++ +   F   +   +      +  +R      N +G    
Sbjct: 656 DTSSD---------SKRSLSETLPTAFSGMKAILVDGRAVRSAVTRYHL---NRLGII-V 702

Query: 731 HKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRG 790
             VN  S    +F   N                 AE   +P   F  +     ET++   
Sbjct: 703 QVVNNMSVGIQAFSGQN---------------GAAEPREKPSILFIENDTWRPETDIQLL 747

Query: 791 KQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQK-------ICEMQEKPDRISQS 843
            + H         P      H      ++ TS+ ++ +        +C    KP R S  
Sbjct: 748 NRLH--------KPRMNGQVHELPKLILLDTSEADKDKNGSIFNVVMC----KPIRASTI 795

Query: 844 PSS----SSAEVPETKP-KPKPKIL----------LVEDNKINVMVAKSMMKQLGHSIDV 888
            S        E+PE K  + +P  L          +V+DNK+N+ VA + +K+ G  +  
Sbjct: 796 ASCLQQLLKVEIPERKENQNRPSFLRSLLVGKNILVVDDNKVNLRVAAAALKKYGAKVHC 855

Query: 889 VNNGVEAVHAVQ-CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMP 947
           V +G +A+  +Q   ++D   MDV MP MDG +ATR IR  E   N +       ++   
Sbjct: 856 VESGKDAISLLQPPHHFDACFMDVQMPEMDGFEATRQIREMEKKANEEQ------KKLTS 909

Query: 948 SSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
           + GS+      P++AMTA+ +  + E+C  +GMD +VSKP   ++L + + +
Sbjct: 910 TEGSTFVEWHSPVLAMTADVIQATYEKCMKSGMDGYVSKPFDEEQLYQAVSR 961


>gi|190148355|gb|ACE63260.1| histidine kinase 2 [Betula pendula]
          Length = 1260

 Score =  221 bits (563), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 184/651 (28%), Positives = 307/651 (47%), Gaps = 80/651 (12%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            Q LAT+SHEIR+P+ GV+ M ++L +T+LD  Q+       +SG  ++ LIN++LD +K+
Sbjct: 666  QFLATVSHEIRTPMNGVLGMLQMLMDTELDAIQQDYAETAHASGKDLISLINEVLDRAKI 725

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAASLQKILM-LEGDIADDVPIEVIGDVLRIRQILT 490
            ESG ++LEA  F  R V+ +V    +     I M L   +++ VP  +IGD  R RQI+T
Sbjct: 726  ESGRLELEAVPFDLRAVLDNVSSLLSGKSYDIRMELAVYVSNRVPEVIIGDPGRFRQIIT 785

Query: 491  NLISNAIKFTPE-GKVGIKLYVVPE----PPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
            NL+ N+IKFT + G + I +++  E    P    E ++Q   +    +D           
Sbjct: 786  NLVGNSIKFTRDTGHILISVHLADEVNGGPDMMDEVMRQGLSSVHEMSD----------- 834

Query: 546  QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
            +T +  +GF      + ++  K        +   NSM+E     + +   V DTG+GIP 
Sbjct: 835  KTYNTLSGFRVVDRWKSWEHFKK-------LGCRNSMEE--PEMIKLLVTVEDTGVGIPL 885

Query: 606  NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
             A   +F  +MQ  +  +R YGGTG+GL+ICK LV+LMGG +   S+   GSTF+F   +
Sbjct: 886  EAQSRIFTPFMQADSSTSRTYGGTGIGLSICKCLVDLMGGEIGFVSEPGVGSTFSFTGLF 945

Query: 666  QVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSI 725
            +   +      PD                    Q++P  L  L         K+++   +
Sbjct: 946  RKVEVTT----PDTKCQ----------------QYEP-ALSELRGLRALVIDKRIIRAEV 984

Query: 726  GFASAHKVNGFSETSYSFPSNNRQKETAPLEDAC--------SVAEVAETLSEPESSFSH 777
                  ++   S+ ++S  S       + L  AC        S+  + + + + E+S S 
Sbjct: 985  TRYHLQRLGISSDITFSLKS-----ACSYLSSACDTSVSAKFSMVLIDKDVWDKETSLSF 1039

Query: 778  SPEPENETEVSRGK------QCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKIC 831
                ++  + SR +      +  +  TS  Q+  TE  S    +  +I+  +        
Sbjct: 1040 HLSLKDHGQNSRTEIPINLPKIFLLATSIGQDEHTELKSAGVVDNVLIKPLRLGVLGACL 1099

Query: 832  EMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNN 891
            +      ++++  SS+   +   K     +IL+V+DN +N  VA+  +K+ G  +  V +
Sbjct: 1100 QEALGRRKVNRKKSSTLGSLLREK-----RILVVDDNAVNRRVAEGALKKYGAIVTCVES 1154

Query: 892  GVEAVHAVQ-CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950
            G  A+  ++   N+D   MD+ MP MDG +ATR IRS E   N + A+            
Sbjct: 1155 GKAALAMLKPPHNFDACFMDLQMPEMDGFEATRRIRSLESEANEEVASREMFGNVA---- 1210

Query: 951  SSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                +   PI+AMTA+ +  S EEC   GMD +VSKP    +L   + ++F
Sbjct: 1211 ----YWHTPILAMTADVIHSSNEECMKCGMDDYVSKPFEEGQLYSAVARFF 1257


>gi|392408843|ref|YP_006445450.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
 gi|390621979|gb|AFM23186.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
          Length = 1390

 Score =  218 bits (554), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 215/736 (29%), Positives = 319/736 (43%), Gaps = 174/736 (23%)

Query: 278  DFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGM-----DVTD 332
            D++   L  G+   RE      L G K  L  V+P+FS      G +YMG+     DV+D
Sbjct: 688  DYRHGSLRTGMSENRE------LAGMKVAL-RVQPIFS------GNHYMGVILNVTDVSD 734

Query: 333  QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMA 392
             V      AKL  E A  KAK                    LATMSHEIR+P+ G++ M 
Sbjct: 735  LVE-----AKLAAESA-SKAK-----------------SDFLATMSHEIRTPMHGIIGMT 771

Query: 393  EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452
            E+L  T+L REQ + L ++ +SGD +L+LINDILD SK+E+G  +LE   F  R ++   
Sbjct: 772  ELLMQTQLSREQTEYLEIIKASGDSLLRLINDILDFSKIEAGKFELEHIGFGLRAMLGET 831

Query: 453  LQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
            +++ A  + QK L L   ++ +VP  + GD +R+RQI+ NL+ NAIKFT  G+V +    
Sbjct: 832  MESLAIQAHQKGLELAFRVSPEVPDVLKGDPVRLRQIIVNLVGNAIKFTSAGEVFM---- 887

Query: 512  VPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDD 571
                                  D + E    P   T                  H    D
Sbjct: 888  ----------------------DVIVESASTPNETTL-----------------HFSVSD 908

Query: 572  PGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGL 631
             G  +       ED +  ++      DTG+           R+Y           GGTGL
Sbjct: 909  TGIGIP------EDKQQEIFSSFTQVDTGMS----------RRY-----------GGTGL 941

Query: 632  GLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSD-----MADQ 686
            GLAI  +L  +M G+L V SK+  GSTF  +  ++   I+ENS D    SD     M   
Sbjct: 942  GLAIGSRLAAMMDGKLWVESKIGNGSTFHLMAKFE---IQENSTDRLQESDTRFNLMGLP 998

Query: 687  DSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAH--KVNGFSETSYSFP 744
              V DD          R L  + +  G +      P  +  ASA    V    +T   F 
Sbjct: 999  VLVVDDNATNL-----RILKEILTGFGMN------PTCVNEASAALTAVKEAQKTESPFL 1047

Query: 745  SNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNP 804
                      ++       + ET               N  +  R KQC +    + + P
Sbjct: 1048 LTILDANMPEMDGFELSRTIVETTGSRGPVIMMLTSSRNRGDSERCKQCGISI--YLKKP 1105

Query: 805  ATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILL 864
                         + Q    N  Q    +  KPD  +Q      AE    + +   KILL
Sbjct: 1106 -------------IKQAELFNAIQMTLGIAHKPDESNQ----PVAECIAGERRRLLKILL 1148

Query: 865  VEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRL 924
            VEDN +N  +A  ++++ G ++ + +NG EA+ +++ +++DLILMD+ MP M+G + T+ 
Sbjct: 1149 VEDNPVNQTLALRLLEKRGCTVSIASNGKEALKSLEAESFDLILMDIEMPEMNGFETTQA 1208

Query: 925  IRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984
            IR+ E                  SSG     + IPIIAMTA+A++   E C   GMD +V
Sbjct: 1209 IRNAEQ-----------------SSG-----EHIPIIAMTAHAMTGDRERCLDAGMDGYV 1246

Query: 985  SKPVTFQKLKECLEQY 1000
            SKPV  ++L   ++++
Sbjct: 1247 SKPVDSRELFFTIDKF 1262


>gi|168016518|ref|XP_001760796.1| sensory histidine protein kinase [Physcomitrella patens subsp.
            patens]
 gi|162688156|gb|EDQ74535.1| sensory histidine protein kinase [Physcomitrella patens subsp.
            patens]
          Length = 1165

 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 192/695 (27%), Positives = 326/695 (46%), Gaps = 98/695 (14%)

Query: 316  KSGETIGVNYMGMDVTDQVRKRE-KMAKLREEIAVQKAKETELNKTIHITEETMRAK-QM 373
            + G  + +N M   + DQVR R  ++ +    + V +A            EE  RAK + 
Sbjct: 530  RKGMELELNEMNSTLEDQVRARTLELERTNRSLQVSQAA----------AEEASRAKSEF 579

Query: 374  LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433
            LA MSHEIR+P+ G++ MA +   T L  EQR+ L  +  S D +L ++N ILDL+K+E+
Sbjct: 580  LANMSHEIRTPIHGIIGMASLALETDLTDEQREHLETVSQSADCLLHIVNAILDLAKIEA 639

Query: 434  GVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNL 492
            G ++LE  +F   + V   ++       QK L L  +I ++VP  ++GD  R++Q L NL
Sbjct: 640  GRVELERIEFSVFDTVSSTIKMLQVRANQKQLQLSWEIDENVPEHLVGDAARLQQCLINL 699

Query: 493  ISNAIKFTPEGKVGI--KLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
            + NAIKFT EG V +  K+Y    P              +  + A  ++K   +  TA++
Sbjct: 700  VGNAIKFTHEGSVSLTAKVYTGTGP-------------LERTSSATLKKKSSSREPTAAE 746

Query: 551  QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
            +   +D  H     +    D   +  S+  ++ +D   ++     V DTGIGI +     
Sbjct: 747  EPQTNDSHHVIDISEIFATDGEISRCSNSATVKKDDRVSLLFA--VQDTGIGISKEKQKE 804

Query: 611  LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
            +F+ + Q  +   R YGGTGLGL+I ++LV++MGGR+ + S+   GSTF FI  + ++  
Sbjct: 805  VFKAFSQADSSTTRLYGGTGLGLSIVERLVQMMGGRIWLESEPGKGSTFYFIAQFDLAGH 864

Query: 671  EENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASA 730
             E+    D+     +Q   ++       + QP    S+F +N  +  K+L  +S      
Sbjct: 865  SESMKSRDEGKLEREQTFQSNRK-----ENQPSQ--SIFETNHMTSQKQLSQDS------ 911

Query: 731  HKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEP-ESSFSH---SPEPENETE 786
            H  N         P +   K    +    +  ++ + L +P  S+  H   S   +   E
Sbjct: 912  HSKN---------PPSGSVKIPHEVSSKRADGDLFQKLDKPFYSNLRHASLSVPAQMNLE 962

Query: 787  VSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSS 846
              +  +C+       Q+ A E+ +             T  P K       P +   SP++
Sbjct: 963  FKQKGRCNSVAVGVLQSMAMENET-------------TPPPTKSSSF---PKKFEWSPNA 1006

Query: 847  SSAEVPETKPKPKPKILLVEDNKI-NVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ--CQN 903
                 P  +   +   +L+ ++ I N  VA   +K+ G  +DVV++G + + A++     
Sbjct: 1007 QLD--PNFEASLRGMKILLAEDNIVNQKVACQQLKKFGTEVDVVSDGQQCLDALERDRNG 1064

Query: 904  YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
            YD+ILMDV MPV+DGL+ATR IR  E+  N                     +   PII +
Sbjct: 1065 YDIILMDVQMPVLDGLQATRKIREIEEKHN---------------------YPHKPIIGL 1103

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
            TA+A+    ++C + GMD++  KP   ++L + ++
Sbjct: 1104 TAHAIQGYKDKCLSAGMDAYACKPFQVRELIQVIQ 1138


>gi|428298374|ref|YP_007136680.1| PAS/PAC sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
 gi|428234918|gb|AFZ00708.1| PAS/PAC sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
          Length = 837

 Score =  207 bits (526), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 190/642 (29%), Positives = 284/642 (44%), Gaps = 141/642 (21%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+P+ G++ M  +L +T L  EQ   +  + +SGD +L +INDILD SK+E
Sbjct: 316 FLAVMSHEIRTPMNGIIGMTNLLLDTSLKPEQLDYVETIRNSGDTLLTIINDILDFSKIE 375

Query: 433 SGVMKLEAAKFRPREVVKHVL-----QTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
           SG ++LE   F  R  V+  L     Q  A  ++ I  LE       P ++IGD+ R+RQ
Sbjct: 376 SGKLELEKHPFDLRVCVEEALDLLASQATAKGIELIYKLES----HTPTQIIGDITRLRQ 431

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQT 547
           I+ NL+SNA+KFT +G++ + +                                  + Q 
Sbjct: 432 IILNLVSNAVKFTTDGEILVTI--------------------------------STQQQI 459

Query: 548 ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
           + ++N  HD +     Q    D   G P    + +D   +A  + + DV  T        
Sbjct: 460 SPEENSQHDCE----LQFAISDTGVGIP---RDRLDRLFQA--FSQVDVSTT-------- 502

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
                R+Y           GGTGLGLAI K+L E+MGGR+ V S+   GSTF F    QV
Sbjct: 503 -----RRY-----------GGTGLGLAIGKRLSEIMGGRMWVESEEGKGSTFYFTAILQV 546

Query: 668 SPIEEN-SDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLG----SLFSSNGT-----SRS 717
            P   N S    +L++     +V +        +Q + +G    S  SSN T       S
Sbjct: 547 HPASFNISHIEPELTNKKLLLAVGNAKLRNCLTWQLQNMGLDVKSSESSNMTLHYMQENS 606

Query: 718 KKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSH 777
            ++    I     H +N  +E   + P N R      L             S+ + +  H
Sbjct: 607 FQIAIIDIDSPDFHHIN-LTEKIRAIP-NQRDLTLIMLS------------SQGKQNLEH 652

Query: 778 SPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKP 837
            P                E T++ Q P      H + +  ++Q ++    ++      K 
Sbjct: 653 QP-------------IATEFTAFLQKP----LRHYQLHNTLLQVARGIWSKQSGNCSTKI 695

Query: 838 DRISQS-PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
              S++ P +      +   K   KILLVED  +N  +A  ++++LG+  DV NNG+EAV
Sbjct: 696 LSYSRTEPQNLPVHDHKFAEKLPLKILLVEDGLVNQKIALKLLEKLGYQADVANNGLEAV 755

Query: 897 HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
            A Q Q YD++ MDV MP MDGL+ATR IR                             K
Sbjct: 756 KATQKQLYDVVFMDVQMPEMDGLEATRQIR-------------------------KELSK 790

Query: 957 RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
           +  IIAMTANA  E  +EC   GM+ ++SKP+ F  ++  L+
Sbjct: 791 QPQIIAMTANARPEDRQECLNAGMNDYISKPIRFDAIEVVLK 832


>gi|421616768|ref|ZP_16057770.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            KOS6]
 gi|421617256|ref|ZP_16058250.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            KOS6]
 gi|409780754|gb|EKN60371.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            KOS6]
 gi|409781249|gb|EKN60851.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            KOS6]
          Length = 924

 Score =  192 bits (489), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 173/634 (27%), Positives = 284/634 (44%), Gaps = 137/634 (21%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            + LA MSHEIR+PL G++   ++L  + L   Q+  LG +  S D +L +IN+ILD SK+
Sbjct: 286  EFLANMSHEIRTPLNGILGFTQLLQKSDLTPRQQDYLGTIEKSADSLLGIINEILDFSKI 345

Query: 432  ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
            E+G + L+   F  R++++  L   A A+  K L L   +  D P+ +IGD LR++Q+LT
Sbjct: 346  EAGKLVLDNIPFNLRDLIEDTLTILAPAAHTKQLELVSLVYRDTPLSLIGDPLRLKQVLT 405

Query: 491  NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
            NLISNAIKFT EG + ++  V                                       
Sbjct: 406  NLISNAIKFTNEGTIAVRAMV--------------------------------------- 426

Query: 551  QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                 +  HGE  Q      D G  ++     D+DL A                      
Sbjct: 427  -----EDDHGERAQLRISVQDTGIGLT-----DQDLRA---------------------- 454

Query: 611  LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
            LF+ + Q     +R+ GGTGLGL I K+L+E MGG + V S    GS F   L      +
Sbjct: 455  LFQAFSQADNSISRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGSEFWISL-----SL 509

Query: 671  EENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASA 730
             +  DD +DL   A                Q R +  L       ++ +    S+G    
Sbjct: 510  PKARDDIEDLPHPA---------------LQGRRIALLERHPLAHQALQHQLESLGL--- 551

Query: 731  HKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRG 790
             +V+ F        +   Q++ + L D  +V  V     EP++      E E     + G
Sbjct: 552  -EVHAFDTLDQMQEAIAAQRQGSQLID-LAVLGVTTREIEPDALGRRLAEIE-----TLG 604

Query: 791  KQCHV--ETT--SWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSS 846
             +C V   TT  S F +   E+ ++++   +   T K    Q++     +P +    P  
Sbjct: 605  CKCVVLCPTTEQSLFHDALPEAHNYTQLQGKPACTRKL---QRVLVELVRPHQAYAEPGQ 661

Query: 847  SSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDL 906
             +   P        ++L V+DN  N+++ K+++  +G  +  V+NG+ A+ AV+ Q +DL
Sbjct: 662  PAVGRPA-------RVLCVDDNPANLLLVKTLLGDMGAEVVAVDNGLAALEAVKQQAFDL 714

Query: 907  ILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966
            +LMDV MP MDG + T  IR +E                + S+G+      +PIIA+TA+
Sbjct: 715  VLMDVQMPGMDGRQTTEAIRHWE----------------LGSAGTP-----LPIIALTAH 753

Query: 967  ALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            AL+        +G+D +++KP++ ++L + + ++
Sbjct: 754  ALANEKRSLLQSGLDDYLTKPISDRQLAQVVLKW 787


>gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
            35110]
 gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
            35110]
          Length = 1629

 Score =  187 bits (475), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/335 (37%), Positives = 175/335 (52%), Gaps = 51/335 (15%)

Query: 341  AKLREEIAVQKAKETELNKTIHITEETMRAKQ----MLATMSHEIRSPLTGVVSMAEILS 396
            A +  +I ++K  E EL   I   EE +RA Q     LA MSHEIR+P+  V+ M  +L 
Sbjct: 898  AAISSDITIRKKVEREL---IEAREEALRAAQAKAEFLANMSHEIRTPMNAVIGMTGLLL 954

Query: 397  NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT- 455
            +T L  EQR+ +  + SSGD +L +INDILD SK+ESG ++LE   F  R  ++  +   
Sbjct: 955  DTPLTAEQREYVETIRSSGDALLTVINDILDFSKIESGKLELEQYPFTLRNAIEECIDIF 1014

Query: 456  AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
            +A + +K L L   I + VP +V GDV R+RQIL NL+SNA+KFT  G+V +++      
Sbjct: 1015 SATAAEKHLELVYFIHEKVPTKVSGDVTRLRQILVNLVSNAVKFTKSGEVVLEV------ 1068

Query: 516  PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQ-NGFHDKKHGEGYQDHKHDDDPGT 574
                                   +  QP+ Q A ++   FHD           HDDD   
Sbjct: 1069 -----------------------QLQQPREQNADERLMVFHD-----------HDDDKYN 1094

Query: 575  PVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLA 634
                     +D + T  +   V DTGIGIP + L  +F  + QV A   RKYGGTGLGL 
Sbjct: 1095 YPQAALQQFDDKKCT--LHFTVRDTGIGIPADRLERIFHSFSQVDASTTRKYGGTGLGLT 1152

Query: 635  ICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSP 669
            I K L ELM G++ V S++  GSTF F +  +  P
Sbjct: 1153 ISKHLCELMNGKMWVESELGKGSTFHFTITLERLP 1187



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 48/209 (22%)

Query: 812  SEANREMIQ-------TSKTNEPQKICEMQEKPDRISQSPSSSSAEVP-ETKPKPKPK-- 861
            S  NRE +        ++  N+P K  ++ +    + Q       E+P   KPKPK K  
Sbjct: 1282 SAGNRETVSETVGVGFSAFLNKPIKQSQLYDVLTDVFQK-----GELPVREKPKPKTKVS 1336

Query: 862  ----------ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
                      IL+ EDN +N  +   +++++G+  DV  NG E + A++ + YDLILMDV
Sbjct: 1337 IDLAREIPLRILIAEDNVVNQKLVLRILEKVGYRADVAANGAEVIEALKSKTYDLILMDV 1396

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MP MDGL ATR I       NW                     +R  IIAMTANA+   
Sbjct: 1397 QMPEMDGLTATRYI-----CQNWP------------------RLERPFIIAMTANAMKGD 1433

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             E C   GMD ++SKPV F  L++ L+++
Sbjct: 1434 REACLEAGMDDYLSKPVRFDDLQKALDKW 1462



 Score = 45.1 bits (105), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 34/159 (21%)

Query: 851  VPETKPKPKPKI-----LLVEDNKINVMVAKSMMKQLG---HSIDVVNNGVEAVHAVQCQ 902
            +P+TK +   K+     L+V+DN  N  +        G   H++    N +E +H+    
Sbjct: 1186 LPDTKGEYSSKLAGKHALIVDDNATNRRILSLQSATWGMSSHTVGSGKNALELIHS--GM 1243

Query: 903  NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
            ++D+ ++D  MP MDGL     +R    T                        + +P++ 
Sbjct: 1244 HFDVGILDFHMPEMDGLMLAMELRKLPQT------------------------QDLPLVM 1279

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            +T+    E+  E    G  +F++KP+   +L + L   F
Sbjct: 1280 LTSAGNRETVSETVGVGFSAFLNKPIKQSQLYDVLTDVF 1318


>gi|428219863|ref|YP_007083335.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
 gi|427992206|gb|AFY71899.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
          Length = 824

 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 128/365 (35%), Positives = 188/365 (51%), Gaps = 62/365 (16%)

Query: 301 FGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKT 360
           F  K +  Y  PV S   +  G+ +   D+T+  RK+ + A+ +    +++AKE+     
Sbjct: 234 FKGKIYDCYSSPVTSPEQKFYGLVWYFRDITE--RKKAEAAQKQLMAELRQAKES----- 286

Query: 361 IHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVL 419
               E   RAK   LA MSHEIR+P+ G++ + ++L+ T L  EQ++L+     SG+ +L
Sbjct: 287 ---AEAAARAKSDFLAVMSHEIRTPINGILGVTQLLATTNLTAEQQKLIQTAQVSGETLL 343

Query: 420 QLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEV 478
            +INDILD SK+E+G ++LE    +    +  V +     ++ K L L   IA +VPI +
Sbjct: 344 TVINDILDFSKIEAGNLELERLPLQLPGCIDEVCKLLTPKAIAKGLKLNHQIAANVPISI 403

Query: 479 IGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKE 538
            GDV R+RQIL NLI+NAIKFT  G++ + + +   P    +G            DA   
Sbjct: 404 GGDVNRLRQILLNLINNAIKFTENGQIDVAVSLSSSPIPDIKG------------DA--- 448

Query: 539 EKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYD 598
              QPKS                        D P  P        E  E  + +   + D
Sbjct: 449 ---QPKS------------------------DQPNQP--------EQPEQEIELLFAITD 473

Query: 599 TGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGST 658
           TGIG+ E  +  LF+ + Q  A  +RKYGGTGLGLAIC++LVELMGG++ V SK   GST
Sbjct: 474 TGIGMSEAEVKGLFQPFFQADASISRKYGGTGLGLAICRRLVELMGGKIWVESKSGQGST 533

Query: 659 FTFIL 663
           F F +
Sbjct: 534 FCFTI 538



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 19/140 (13%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KIL+ EDN IN  +  +M+ ++G+  DVV+NGV A+ A+    YD++ +DV MP MDGL+
Sbjct: 573  KILIAEDNLINQELTLAMLVKMGYEADVVDNGVAAIAALLESAYDILFLDVHMPEMDGLE 632

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
              R +        WD  A               ++ R  IIAMTANA+    + C   GM
Sbjct: 633  TARYL-----VQKWDTLAV--------------NYTRPAIIAMTANAMEGDRQMCLKAGM 673

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D +VSKPV   +L++ L+++
Sbjct: 674  DDYVSKPVLLAELQQMLQKW 693



 Score = 41.2 bits (95), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 24/127 (18%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +IL+VEDN  ++ +   ++   G+ +    +G +A+  V  +  DLIL+D+ +P ++G +
Sbjct: 15  QILIVEDNPDSLELLADVITSYGYEVSTAADGNQALAQVATKTPDLILLDIMLPGINGYE 74

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
             + ++  E                        H K IP+I ++A   S+   + FA   
Sbjct: 75  VCQNLKEKE------------------------HTKDIPVIFISALDSSKYKLKAFAVEG 110

Query: 981 DSFVSKP 987
             +++KP
Sbjct: 111 ADYITKP 117


>gi|427419449|ref|ZP_18909632.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
 gi|425762162|gb|EKV03015.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 7375]
          Length = 923

 Score =  181 bits (459), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/291 (39%), Positives = 152/291 (52%), Gaps = 55/291 (18%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LA MSHEIR+P+ GV+    +L NT L  EQ++ + ++ +S D +L +INDILD SK+
Sbjct: 382 QFLANMSHEIRTPMNGVIGTTSLLLNTDLSFEQQEYVDIIQNSSDSLLGVINDILDFSKI 441

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG M LE + F  R  ++ VL   A+ +L+K L L   IA DVP  + GD+ R+RQIL 
Sbjct: 442 ESGYMVLEESSFELRHCIEDVLDLFASEALEKNLDLLYQIASDVPRCIQGDLNRLRQILM 501

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+SNAIKFT +G+V I +            L+Q +       D+   E  QP       
Sbjct: 502 NLVSNAIKFTEKGEVLISVR-----------LRQSASLNSKTIDSKTLETIQP------- 543

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                                               E  + +   V DTGIGIP + +P 
Sbjct: 544 ------------------------------------EFPIILEFFVKDTGIGIPIDGIPK 567

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           LF+ + QV     RKYGGTGLGLAICK+LV LM G + V S V  GSTF F
Sbjct: 568 LFKDFSQVDNSTTRKYGGTGLGLAICKRLVTLMRGEIWVASDVGQGSTFYF 618



 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 24/143 (16%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            P  +IL+ EDN +N MV   ++ +L +S D+  NG+E + A++ Q YD+I MD+ MP +D
Sbjct: 802  PPLRILVAEDNPVNQMVVLRILAKLDYSGDLAANGLEVLEALERQPYDIIFMDLQMPEID 861

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            GL+AT                    EQ +   G      R  IIA TAN   E    CFA
Sbjct: 862  GLEAT--------------------EQIIEKWGED----RPKIIAATANVQQEDQAACFA 897

Query: 978  NGMDSFVSKPVTFQKLKECLEQY 1000
             GMD ++SKP   ++++  L ++
Sbjct: 898  AGMDDYISKPYALEQIQGMLTKW 920


>gi|320167782|gb|EFW44681.1| multi-sensor hybrid histidine kinase [Capsaspora owczarzaki ATCC
           30864]
          Length = 1463

 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 164/298 (55%), Gaps = 23/298 (7%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHE+R+P+  V+ + E+L  T L+ EQR+L+  M SSG+++L++INDILD SK 
Sbjct: 580 EFLAMMSHELRTPMYAVMGLGELLGETSLNVEQRELVDGMRSSGEVLLRIINDILDFSKY 639

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADD-VPIEVIGDVLRIRQILT 490
           ESG+++LE   F     ++  L   +   Q+  +    + D  VP  V+GDV R+RQI+ 
Sbjct: 640 ESGMVQLERLPFELLSCMEEALDIVSGKAQERGIRLACLVDSLVPEVVVGDVTRLRQIIV 699

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKE--EKHQPKSQTA 548
           NL+SNA+KFT EG+  + + +                    A+ AV E  E++  K++  
Sbjct: 700 NLLSNAVKFTREGEAVVMVRM--------------------ASPAVVEMAEQNIAKARVE 739

Query: 549 SDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608
           S ++         G Q H      G P     S          +   V DTGIGIP + +
Sbjct: 740 SKESAAPVPAITAGQQAHPLGLRAGRPSLRSASSTSMTGVRQVLHFTVADTGIGIPADRI 799

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
             LF K+ QV +   RK+GGTGLGLAIC +LV L+GG + V S++H GS+F F LP +
Sbjct: 800 HVLFNKFFQVDSSVTRKFGGTGLGLAICHKLVSLLGGHIWVDSELHRGSSFHFTLPVE 857



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 22/128 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGH-SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
            +ILL EDN +N  V   ++  LG+ ++++ NNG+EAV AV+ + +  +LMD+ MP +DG+
Sbjct: 1330 RILLAEDNPVNQRVTTKLLYVLGYRNVELANNGLEAVAAVKARPFHCVLMDINMPELDGV 1389

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
             A+   R  ED           I Q           ++  I+AMTAN L    + C A G
Sbjct: 1390 SAS--ARIMED---------PAIAQ----------HRKPYIVAMTANVLVADRQRCVAAG 1428

Query: 980  MDSFVSKP 987
            M  ++SKP
Sbjct: 1429 MQGYLSKP 1436


>gi|298529160|ref|ZP_07016563.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510596|gb|EFI34499.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1154

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/396 (33%), Positives = 202/396 (51%), Gaps = 52/396 (13%)

Query: 275 ESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQV 334
           E+Q++ R+ +E+G P   E    +     ++F + +     +      V    +D+T+  
Sbjct: 327 EAQEWIRKAVEQG-PQVFEWHMRSR--SGRSFWVQIHLRCIEVNAAPCVLATAIDITE-- 381

Query: 335 RKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAE 393
            +R+   KL E     + K  EL+  +   +   +AK + LA MSHEIR+P+ GV+ M  
Sbjct: 382 -RRQAEEKLHETARQMERKTVELDAALTRADAASKAKSEFLANMSHEIRTPMNGVIGMTG 440

Query: 394 ILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL 453
           +L  T L+  QR+    + SSG  +L L+NDILD SK+ESG ++LEA  F  R+ + +  
Sbjct: 441 LLLETDLNETQRRYAETVRSSGQALLALLNDILDFSKIESGKLELEALNFDLRDTLDNFA 500

Query: 454 QTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
              A  + +K L        DVP  +IGD  RIRQILTNL+ NA+KFT  G+V +++ + 
Sbjct: 501 SMMAFKAEEKGLEFICSADPDVPDNLIGDPGRIRQILTNLVGNAVKFTERGEVVVRVSI- 559

Query: 513 PEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDP 572
                      Q+S         V+ ++   KSQ   D++    ++ G+  Q+       
Sbjct: 560 -----------QES--------GVRRQETGDKSQETGDKS----QETGDKSQES------ 590

Query: 573 GTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLG 632
                         E    +R  V DTGIGIPE+ +  LF+ + QV A   RK+GGTGLG
Sbjct: 591 --------------EEFCMLRFSVRDTGIGIPEDKIGLLFQSFSQVDASVTRKFGGTGLG 636

Query: 633 LAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           LAI +QL ELMGG + V S    G+TF F +P  ++
Sbjct: 637 LAISRQLAELMGGEVGVESIEGQGTTFWFTVPLSLA 672



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 91/158 (57%), Gaps = 16/158 (10%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            K +ILL EDN  N  VA +M+K  G S D V NG+EA+ A++   YDL+LMDV M  MDG
Sbjct: 840  KARILLAEDNITNQQVALAMLKNFGLSADAVANGLEAIKALKTVPYDLVLMDVQMLEMDG 899

Query: 919  LKATRLIRSFEDTG-------------NWDAAAEAGIEQAMPSSGSSN--HFKRIPIIAM 963
            L ATR IR+ E  G             + +++    +   +P S +S    F RIPIIA+
Sbjct: 900  LAATRRIRAAEIRGRELEVRDQRLKSESQNSSIPESLNPLIPQSLNSRIPEF-RIPIIAL 958

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            TA+A+    E+C   GMD +++KP+   +L E L+++ 
Sbjct: 959  TAHAMQGYREQCLEAGMDDYLTKPLEPVQLAEMLDKWL 996


>gi|443478902|ref|ZP_21068591.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
 gi|443015741|gb|ELS30571.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
          Length = 807

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 190/365 (52%), Gaps = 77/365 (21%)

Query: 305 TFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT 364
           T+  +   V S +G+  G  +   D+TD  RK+        E  +QKAKE        + 
Sbjct: 222 TYEYFSSSVTSPTGKFWGFVWRFRDITD--RKQY-------ENNLQKAKE--------VA 264

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           E  +R K + LA MSHEIR+P+ GV+ M E+L+ T LDREQ + +  + +SG+++L +IN
Sbjct: 265 EAALRVKSEFLAMMSHEIRTPINGVLGMTELLATTTLDREQNRFVQSIQTSGEILLTVIN 324

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA----ASLQKILMLEGDIADDVPIEVI 479
           DILD SK+ES  + LE+    P ++ + +  T A    A+  K + L   I    P  ++
Sbjct: 325 DILDFSKLESQQLLLESI---PLDITQIIADTCALLSQAAESKGIGLLYHIDSKAPPYIL 381

Query: 480 GDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEE 539
           GD +R+RQIL NL +NA+KFTP+G+V + + ++ E                         
Sbjct: 382 GDPIRLRQILLNLANNAVKFTPKGEVRLSVSLLNE------------------------- 416

Query: 540 KHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDT 599
                SQ  S QN F ++   E  Q   H+  P                   +  +V D+
Sbjct: 417 -----SQNES-QNEFQNEFQNESLQ---HESRPS------------------LLFEVRDS 449

Query: 600 GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTF 659
           GIG+    +  LF+ + Q S   AR+YGGTGLGLAIC++LV++MGGR+   S +  GSTF
Sbjct: 450 GIGLSPEQIQKLFQPFTQASIATARQYGGTGLGLAICQKLVQMMGGRIWAESSLGNGSTF 509

Query: 660 TFILP 664
           +F+LP
Sbjct: 510 SFVLP 514



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 80/140 (57%), Gaps = 17/140 (12%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK- 920
            IL+ EDN IN  +  +M+ ++G++  +VN+G+EA+ +++   +D++ +DV MP ++GL+ 
Sbjct: 553  ILVAEDNLINQELVLAMLSKMGYNPTIVNDGLEALESLRNHPFDIVFLDVQMPRLNGLET 612

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            A+R++                 E A  S     +  R  +IAMTA+A+    E C   GM
Sbjct: 613  ASRIVH----------------EWAEISKNQVTNCPRPTLIAMTASAMQGDREICLEAGM 656

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D ++SKP++F  L+  LE +
Sbjct: 657  DDYISKPISFDTLERMLECW 676



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 24/133 (18%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           +L+++D   N  V ++ ++   + +    NG +A+  +     DLIL+DV MP +DG++ 
Sbjct: 6   VLIIDDEADNFDVIETFLRDHNYQLHYAPNGQDAIAHLDTFKPDLILLDVMMPGIDGIEV 65

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            + I++     N                        +PII +TA    E   +C   G +
Sbjct: 66  CQRIKAIPKWNN------------------------VPIIMVTALISKEDIAKCLNAGAN 101

Query: 982 SFVSKPVTFQKLK 994
            F+SKP+  Q+ +
Sbjct: 102 DFISKPLNSQEFQ 114


>gi|320101775|ref|YP_004177366.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749057|gb|ADV60817.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1093

 Score =  181 bits (458), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/369 (33%), Positives = 178/369 (48%), Gaps = 65/369 (17%)

Query: 316 KSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QML 374
           + G T+ V+     +  +     ++  +  +I+V+K  E +L +   I ++   AK + L
Sbjct: 373 RDGSTLEVDLQVFTIPGEREADLRLVWVARDISVRKRFEAQLVEAKRIADQANEAKTRFL 432

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           A MSHEIR+PL  V+ M  +L +T L  EQR L   + SSG+ +L+L+N +LDLSK+ESG
Sbjct: 433 AGMSHEIRTPLNSVLGMTRLLMDTPLTAEQRDLAAAIQSSGESLLELVNGVLDLSKIESG 492

Query: 435 VMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493
            M+LE A   PR VV+ VL   AA+ + K L +   +A+DVP  V GD  ++RQ+L NL 
Sbjct: 493 RMELEHASMSPRGVVESVLDMIAATAERKGLEVAARVAEDVPERVRGDAAKLRQVLVNLA 552

Query: 494 SNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNG 553
           SNA+KFT  G V I +  + + P                         +P   + SD+ G
Sbjct: 553 SNAVKFTASGSVTIDVITLGQCPL------------------------RPGRDSVSDRPG 588

Query: 554 FHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFR 613
                                                 +   V DTG+GI  + +  LF 
Sbjct: 589 LI------------------------------------LSFTVRDTGVGIAPDKVSRLFD 612

Query: 614 KYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL---PYQVSPI 670
            Y Q  A   R YGGTGLGLAI K+LVELMGG + V S+   GS F F +   P    P+
Sbjct: 613 AYRQADASITRLYGGTGLGLAISKKLVELMGGEIEVESEPGRGSIFRFTIRVEPDSSHPV 672

Query: 671 EENSDDPDD 679
               D+  D
Sbjct: 673 RSGLDNDRD 681



 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 23/132 (17%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILL +D   N  + +  + +LG++ D V +G + + A++ ++YD+IL+D+ MPV+DGL  
Sbjct: 955  ILLADDVATNRKLMELTLARLGYTPDSVADGAQVLEALRQRDYDVILLDLEMPVLDGLAT 1014

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T++IR       W   ++                    +IA+TA AL+    EC A GM+
Sbjct: 1015 TQVIRR-----EWPPESQPW------------------LIALTARALASDRAECLAAGME 1051

Query: 982  SFVSKPVTFQKL 993
             +++KP+   +L
Sbjct: 1052 DYLAKPLRIDEL 1063


>gi|110288960|gb|AAP53311.2| histidine kinase 3, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1186

 Score =  179 bits (455), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 174/310 (56%), Gaps = 23/310 (7%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+LD  QR  +     SG  ++ LIN++LDL+K+
Sbjct: 599 QFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKI 658

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA +F  R+++ +V+   +  S  K + L   ++D VP  +IGD  R RQI+T
Sbjct: 659 ESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIIT 718

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + I+++++ E     E L   S      T      K+     T S 
Sbjct: 719 NLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVT---ANSKNTMPYNTLSG 775

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
               +++K  E ++  K   D         ++D     +V +   V DTGIGI ++A   
Sbjct: 776 LEVANNRKTLESFRMFKDSSD---------AID-----SVNLLVTVEDTGIGITKDAQTR 821

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
           +F  +MQ     +R YGGTG+GL+I K+LVELMGG +   SK    STF+F   ++    
Sbjct: 822 IFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSSTFSFTAIFK---- 877

Query: 671 EENSDDPDDL 680
            EN  DP D+
Sbjct: 878 -ENRKDPGDI 886



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DN +N +VA   +K+ G  +  V++G EA+  +Q    +D   MDV MP MDG +
Sbjct: 1058 ILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFE 1117

Query: 921  ATRLIRSFEDTGN 933
            ATRL+RS E   N
Sbjct: 1118 ATRLVRSVESKIN 1130


>gi|118790684|tpd|FAA00249.1| TPA: histidine kinase [Oryza sativa Japonica Group]
          Length = 1187

 Score =  179 bits (455), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 174/310 (56%), Gaps = 23/310 (7%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+LD  QR  +     SG  ++ LIN++LDL+K+
Sbjct: 583 QFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKI 642

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA +F  R+++ +V+   +  S  K + L   ++D VP  +IGD  R RQI+T
Sbjct: 643 ESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIIT 702

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + I+++++ E     E L   S      T      K+     T S 
Sbjct: 703 NLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVT---ANSKNTMPYNTLSG 759

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
               +++K  E ++  K   D         ++D     +V +   V DTGIGI ++A   
Sbjct: 760 LEVANNRKTLESFRMFKDSSD---------AID-----SVNLLVTVEDTGIGITKDAQTR 805

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
           +F  +MQ     +R YGGTG+GL+I K+LVELMGG +   SK    STF+F   ++    
Sbjct: 806 IFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSSTFSFTAIFK---- 861

Query: 671 EENSDDPDDL 680
            EN  DP D+
Sbjct: 862 -ENRKDPGDI 870



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 5/141 (3%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DN +N +VA   +K+ G  +  V++G EA+  +Q    +D   MDV MP MDG +
Sbjct: 1042 ILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFE 1101

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATRL+RS E   N     +AG E +    G+  H+  +PI+AMTA+ +  + E C   GM
Sbjct: 1102 ATRLVRSVESKIN--DTIQAG-EVSSEIYGNKAHW-HVPILAMTADVIQATFEGCMECGM 1157

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +V+KP   Q+L   +  + 
Sbjct: 1158 DGYVAKPFEEQQLYSAVAHFL 1178


>gi|332709992|ref|ZP_08429948.1| PAS domain S-box protein [Moorea producens 3L]
 gi|332351363|gb|EGJ30947.1| PAS domain S-box protein [Moorea producens 3L]
          Length = 1738

 Score =  179 bits (454), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 134/379 (35%), Positives = 196/379 (51%), Gaps = 36/379 (9%)

Query: 330  VTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRA-----KQMLATMSHEIRSP 384
            V DQV      A L E+   Q+ + TE N  +     T  A      + LATMSHEIR+P
Sbjct: 947  VADQVGIAIAQAHLLEQETRQREQLTEQNFALEQARRTAEAATQAKSEFLATMSHEIRTP 1006

Query: 385  LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
            +  V+ M  +L +T L  +QR  +  + +SGD +L +INDILD SK+ESG ++LE   F 
Sbjct: 1007 MNAVIGMTGLLLDTDLTSQQRDFVETIRNSGDSLLTIINDILDFSKIESGKLELEEQPFN 1066

Query: 445  PREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
                ++  L   AA + +K L L      + P  ++GDV R+RQIL NL+ NAIKFT  G
Sbjct: 1067 LITCIEESLDLLAAKAAEKKLELAYLFHPNTPPMIVGDVTRLRQILVNLLGNAIKFTHIG 1126

Query: 504  KVGIKLYV----VPEPPFAKEGLKQKSKAYQSATDAVKEE-KHQPKS------------Q 546
            +V + +      + E    KE     +  Y     +  +  KH   S            Q
Sbjct: 1127 EVLVSVTARELSIGELVDGKETEHSNTANYSYPLASAPDYGKHYSLSFPTLANGKDYTLQ 1186

Query: 547  TASDQNGFHDKKHG-EGYQDHKHDDD-----PGTPVSHGNSMDEDL-----EATVW-IRC 594
               DQ G+ +   G +G Q++  D+      P   +S  N           +++++ I+ 
Sbjct: 1187 GGFDQTGYINGVRGAKGTQNNTRDNTRVFSPPHPQISSRNPHTARFRSASTQSSIYEIQF 1246

Query: 595  DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
             V DTGIGIPE+ +  LF+ + QV +  +R+YGGTGLGLAIC++L  +MGG++ V S+V 
Sbjct: 1247 VVKDTGIGIPEDRIDRLFQSFSQVDSSTSRQYGGTGLGLAICQRLTTMMGGKIWVESQVG 1306

Query: 655  CGSTFTF-ILPYQVSPIEE 672
             GS F F +L  Q  PIEE
Sbjct: 1307 QGSKFYFTVLAKQPDPIEE 1325



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 86/167 (51%), Gaps = 23/167 (13%)

Query: 833  MQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNG 892
            M  +P +I ++P+       E   K   +ILL EDN +N  +A  ++K++G+  DV  NG
Sbjct: 1456 MSGQPIKIKRTPAQHLKLDTEMAQKHPLRILLAEDNIVNQQLALQLLKRMGYRADVAGNG 1515

Query: 893  VEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
            +E + A+  Q YDL+LMDV MP MDGL AT+ I        W A                
Sbjct: 1516 LEVLQALSRQPYDLVLMDVQMPEMDGLTATQRI-----CEQWPA---------------- 1554

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
             H  R  IIAMTANA+    E C + GMD ++SKP+   +L   L Q
Sbjct: 1555 -HL-RPWIIAMTANAMEGDREMCLSAGMDDYISKPIQVPELVRALSQ 1599


>gi|20279446|gb|AAM18726.1|AC092548_4 putative histidine kinase [Oryza sativa Japonica Group]
          Length = 925

 Score =  179 bits (454), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 174/310 (56%), Gaps = 23/310 (7%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+LD  QR  +     SG  ++ LIN++LDL+K+
Sbjct: 338 QFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKI 397

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA +F  R+++ +V+   +  S  K + L   ++D VP  +IGD  R RQI+T
Sbjct: 398 ESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIIT 457

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + I+++++ E     E L   S      T      K+     T S 
Sbjct: 458 NLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVT---ANSKNTMPYNTLSG 514

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
               +++K  E ++  K   D         ++D     +V +   V DTGIGI ++A   
Sbjct: 515 LEVANNRKTLESFRMFKDSSD---------AID-----SVNLLVTVEDTGIGITKDAQTR 560

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
           +F  +MQ     +R YGGTG+GL+I K+LVELMGG +   SK    STF+F   ++    
Sbjct: 561 IFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSSTFSFTAIFK---- 616

Query: 671 EENSDDPDDL 680
            EN  DP D+
Sbjct: 617 -ENRKDPGDI 625



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
           IL+V+DN +N +VA   +K+ G  +  V++G EA+  +Q    +D   MDV MP MDG +
Sbjct: 797 ILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFE 856

Query: 921 ATRLIRSFEDTGN 933
           ATRL+RS E   N
Sbjct: 857 ATRLVRSVESKIN 869


>gi|330508892|ref|YP_004385320.1| histidine-protein kinase [Methanosaeta concilii GP6]
 gi|328929700|gb|AEB69502.1| histidine-protein kinase [Methanosaeta concilii GP6]
          Length = 925

 Score =  179 bits (453), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 176/641 (27%), Positives = 269/641 (41%), Gaps = 155/641 (24%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            L  MSHEIR+P+  ++ MA +L  T +  EQR  L  +  SG  +L +I+DILD SK++
Sbjct: 415 FLDNMSHEIRTPMNAIIGMARLLQGTDIKPEQRDFLDTIQKSGSALLAIIDDILDYSKID 474

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
              M+L    F  +  ++  L   A  + +K L L   + +DVP  ++GDV R+RQ+L N
Sbjct: 475 GDKMELVNVPFDLQICIEDSLDLVAIKASEKGLELAYLLENDVPKRIVGDVNRLRQVLVN 534

Query: 492 LISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQ 551
           L+ NA+KFT  G V                LK  S+  + + D  K E H     T    
Sbjct: 535 LLGNAVKFTDRGDV---------------VLKVSSRRLEGSDD--KVELHFAVRDTGI-- 575

Query: 552 NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTL 611
            G   +   E +Q     D   T  S+G                   TG+G         
Sbjct: 576 -GISPENQSELFQSFTQVDSSKTR-SYGG------------------TGLG--------- 606

Query: 612 FRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIE 671
                                LAI + +VE MGGR+   S++  GS+F F          
Sbjct: 607 ---------------------LAISRGIVERMGGRIWAESEIGTGSSFYF---------- 635

Query: 672 ENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRT-----LGSLFSSNGTSRSKKL-LPNSI 725
                 D  +D+AD  +   D+  G     PR+        +   NG++    +    S+
Sbjct: 636 ------DFAADVADISADLQDLDGG--SPTPRSRLENKRALIIDDNGSALEMLIRATRSL 687

Query: 726 GFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSH-------- 777
           G  +    NG S          R++    L DA    E  + L+E   S  +        
Sbjct: 688 GMIT----NGASSLQEGKTHLEREEYDVVLMDAMMTDEDGQDLAEKIKSKRYGEVWLVLL 743

Query: 778 SPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKP 837
           SP       + RG    V    W   P  ++        ++I  S+   P          
Sbjct: 744 SP-------LGRGSSSKVMADGWLNKP-VKALQLRNLLEDLISHSENETP---------- 785

Query: 838 DRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
             I+++ +     + E +     +IL+ EDN +N  VA SM+K+LG+  DV  NG++ + 
Sbjct: 786 --IAENNAFLEGPIAEAR---TIRILMAEDNPVNRKVALSMLKRLGYQADVAENGLKVLQ 840

Query: 898 AVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR 957
           A+Q + YD++LMDV MP MDGL+ATR IR   D+G                         
Sbjct: 841 ALQEKPYDIVLMDVQMPEMDGLEATRRIR---DSG-----------------------YN 874

Query: 958 IPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
             IIAMTA+++ ES +EC   GM++++SKP+  ++L   LE
Sbjct: 875 TCIIAMTAHSMGESRDECLDAGMNAYISKPIEIEELARVLE 915


>gi|218184380|gb|EEC66807.1| hypothetical protein OsI_33219 [Oryza sativa Indica Group]
          Length = 942

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 174/310 (56%), Gaps = 23/310 (7%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+LD  QR  +     SG  ++ LIN++LDL+K+
Sbjct: 338 QFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKI 397

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA +F  R+++ +V+   +  S  K + L   ++D VP  +IGD  R RQI+T
Sbjct: 398 ESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIIT 457

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + I+++++ E     E L   S      T      K+     T S 
Sbjct: 458 NLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVT---ANSKNTMPYNTLSG 514

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
               +++K  E ++  K   D         ++D     +V +   V DTGIGI ++A   
Sbjct: 515 LEVANNRKTLESFRMFKDSSD---------AID-----SVNLLVTVEDTGIGITKDAQTR 560

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
           +F  +MQ     +R YGGTG+GL+I K+LVELMGG +   SK    STF+F   ++    
Sbjct: 561 IFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSSTFSFTAIFK---- 616

Query: 671 EENSDDPDDL 680
            EN  DP D+
Sbjct: 617 -ENRKDPGDI 625



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 5/141 (3%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DN +N +VA   +K+ G  +  V++G EA+  +Q    +D   MDV MP MDG +
Sbjct: 797  ILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFE 856

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATRL+RS E   N     +AG E +    G+  H+  +PI+AMTA+ +  + E C   GM
Sbjct: 857  ATRLVRSVESKIN--DTIQAG-EVSSEIYGNKAHW-HVPILAMTADVIQATFEGCMECGM 912

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +V+KP   Q+L   +  + 
Sbjct: 913  DGYVAKPFEEQQLYSAVAHFL 933


>gi|110331743|dbj|BAE97709.1| cytokinin receptor histidine kinase [Oryza sativa Japonica Group]
 gi|222612690|gb|EEE50822.1| hypothetical protein OsJ_31230 [Oryza sativa Japonica Group]
          Length = 942

 Score =  179 bits (453), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 174/310 (56%), Gaps = 23/310 (7%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+LD  QR  +     SG  ++ LIN++LDL+K+
Sbjct: 338 QFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKI 397

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA +F  R+++ +V+   +  S  K + L   ++D VP  +IGD  R RQI+T
Sbjct: 398 ESGKIELEAVRFDVRDILDNVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIIT 457

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + I+++++ E     E L   S      T      K+     T S 
Sbjct: 458 NLVGNSMKFTEQGHIFIRVHLIEEVKRKMEALDDTSPENIEVT---ANSKNTMPYNTLSG 514

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
               +++K  E ++  K   D         ++D     +V +   V DTGIGI ++A   
Sbjct: 515 LEVANNRKTLESFRMFKDSSD---------AID-----SVNLLVTVEDTGIGITKDAQTR 560

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
           +F  +MQ     +R YGGTG+GL+I K+LVELMGG +   SK    STF+F   ++    
Sbjct: 561 IFTPFMQADGSTSRTYGGTGIGLSITKRLVELMGGEIGFVSKPGVSSTFSFTAIFK---- 616

Query: 671 EENSDDPDDL 680
            EN  DP D+
Sbjct: 617 -ENRKDPGDI 625



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 5/141 (3%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DN +N +VA   +K+ G  +  V++G EA+  +Q    +D   MDV MP MDG +
Sbjct: 797  ILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFE 856

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATRL+RS E   N     +AG E +    G+  H+  +PI+AMTA+ +  + E C   GM
Sbjct: 857  ATRLVRSVESKIN--DTIQAG-EVSSEIYGNKAHW-HVPILAMTADVIQATFEGCMECGM 912

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +V+KP   Q+L   +  + 
Sbjct: 913  DGYVAKPFEEQQLYSAVAHFL 933


>gi|109631212|gb|ABG35782.1| SHK300 [Striga asiatica]
          Length = 974

 Score =  175 bits (444), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 186/349 (53%), Gaps = 25/349 (7%)

Query: 323 VNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIR 382
           + YM       + K E      +E+ VQ A+  ++ K+           Q LAT+SHEIR
Sbjct: 343 IGYMAYSAVSHIVKVEDDFNKMQELKVQ-AEAADVAKS-----------QFLATVSHEIR 390

Query: 383 SPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAK 442
           +P+ G++ M ++L +T+L   QR         G+ ++ LIN++LD +K+E+G ++LEA  
Sbjct: 391 TPMNGILGMLQLLLDTELSSTQRDFAQTAQGCGEALITLINEVLDRAKIEAGKLELEAVP 450

Query: 443 FRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTP 501
           F  R ++  VL   +  S QK + L   ++D VP  V+GD  R RQ++ NL+ N++KFT 
Sbjct: 451 FDLRSILDDVLSLFSEKSRQKGIELAVFVSDKVPEIVVGDPGRFRQVIINLVGNSVKFTE 510

Query: 502 EGKVGIKLYVVPEPPFAKEG-LKQKSKAYQSATDAVKEEKHQPKS--QTASDQNGFHDKK 558
           EG + +++++  +    K+  L+  S     AT           S  Q A +++ +   +
Sbjct: 511 EGHIFVQVHLTAQSKPTKDAKLENLSNGEAEATPKSYSRSFNTLSGKQAADNRSSWEILR 570

Query: 559 HGEGYQDHKHDDDPGTPVSHGNS-MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQ 617
           H     D K   +P +   + N+   E +  TV +     DTGIGIPE A   +F  +MQ
Sbjct: 571 H----LDEKLLYNPSSKAENDNNPKSESVSLTVCVE----DTGIGIPEQAQKRVFTPFMQ 622

Query: 618 VSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
             +  +R YGGTG+GL+I K LVELMGGR++  S    GSTF+F + +Q
Sbjct: 623 ADSSTSRNYGGTGIGLSISKCLVELMGGRMSFISLPQVGSTFSFTVEFQ 671



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 17/142 (11%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   + + G  +    +G EA+  +Q   ++D   MD+ MP MDG 
Sbjct: 830  KILVVDDNVVNRRVAAGALNKFGAEVKCAESGHEALAFLQIPHDFDACFMDIQMPEMDGF 889

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATRLIR  E      A  E  +E  MP            I+AMTA+ +  + +EC   G
Sbjct: 890  EATRLIREVE----MKAKMEKNVEWHMP------------ILAMTADVIHATLDECLKCG 933

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + ++F
Sbjct: 934  MDGYVSKPFQEKTLYQAVAKFF 955


>gi|428218417|ref|YP_007102882.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
 gi|427990199|gb|AFY70454.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
          Length = 1669

 Score =  175 bits (444), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/318 (37%), Positives = 168/318 (52%), Gaps = 15/318 (4%)

Query: 353  KETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVM 411
            K T L +     E   RAK + LA MSHEIR+P+ GV+ M  +L +T L + QR+ + ++
Sbjct: 1035 KNTALQQAKQDAEAANRAKSEFLAMMSHEIRTPMNGVIGMTGLLLDTPLSKVQREYVEIV 1094

Query: 412  ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDI 470
             SSG+ +L +INDILD SK+ESG ++LE   F   + +   +      +++K L+L   I
Sbjct: 1095 RSSGESLLTIINDILDFSKIESGKLELEEQPFDLLDCLAGSIDLLGPKAVEKGLVLNYLI 1154

Query: 471  ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQ 530
              DVP ++ GDV R+RQIL NLI+N IKFT  G+V + + +      +     +      
Sbjct: 1155 EPDVPQQITGDVTRLRQILVNLIANGIKFTEAGEVSVTVSLSSAMDSSSSLDGRSLSQLD 1214

Query: 531  SATDAVKE-----EKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDED 585
            S TD   E     E  Q      SDQ+G      G    +     +P     H  S    
Sbjct: 1215 SETDETDEFNPANEWGQGAKSGESDQSGELASSDGGNNLEAIAAVEP----EHNQS---- 1266

Query: 586  LEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
            L  +  I+  V DTGIGIP   +  LF+ + QV A   R+YGGTGLGL I K+L ELMGG
Sbjct: 1267 LAHSHTIQFAVRDTGIGIPPEKMERLFKAFSQVDASITRQYGGTGLGLVISKRLCELMGG 1326

Query: 646  RLTVTSKVHCGSTFTFIL 663
             + V S++  GS F F L
Sbjct: 1327 TMRVESELDRGSIFYFTL 1344



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 83/142 (58%), Gaps = 27/142 (19%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KILL EDN +N  VA  M++++G+  D+V NG+EA+ A+Q Q YDL+LMDV MP MDG++
Sbjct: 1540 KILLAEDNAVNQKVAIRMLEKMGYRADLVGNGLEAIEALQRQTYDLVLMDVQMPEMDGME 1599

Query: 921  ATRLI--RSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            ATR I  R+  DT  W                         I+AMTANA+    E C A 
Sbjct: 1600 ATRQIRDRTKADTHPW-------------------------IVAMTANAMQGDRENCLAA 1634

Query: 979  GMDSFVSKPVTFQKLKECLEQY 1000
            GM+ +VSKPV+  +L   +E+Y
Sbjct: 1635 GMNDYVSKPVSVDELVAAIERY 1656



 Score = 43.9 bits (102), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 25/143 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ-CQNYDLILMDVCMPVMDGL 919
            K L+V D + N  +  +  +  G      ++G EA+  +   QN+DL+++D+ MPV D L
Sbjct: 1369 KALIVADREDNRAILSTYTQAWGIETKTTSSGAEALSMLSDRQNFDLVILDLQMPVADEL 1428

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            K                     + Q+M S+      K IP+I +T+  +S    +  +N 
Sbjct: 1429 K---------------------LAQSMQSTVPG---KPIPLILLTSVGVSTKQLQQASNH 1464

Query: 980  MDSFVSKPVTFQKLKECLEQYFP 1002
              + ++KP++  KL + + +  P
Sbjct: 1465 RIAILAKPLSQSKLHQAIVRIIP 1487


>gi|370988691|dbj|BAL43559.1| cytokinin receptor histidine protein kinase [Petunia x hybrida]
          Length = 985

 Score =  174 bits (442), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 200/382 (52%), Gaps = 38/382 (9%)

Query: 302 GSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTI 361
           G+ T  I++  +F      + + Y G      + K E      +E+ VQ A+  ++ K+ 
Sbjct: 329 GAVTTAIFIFTIF------VLIGYTGYKSASHINKVEDDFHKMQELKVQ-AEAADVAKS- 380

Query: 362 HITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQL 421
                     Q LAT+SHEIR+P+ G++ M  +L +T L   QR       + G  ++ L
Sbjct: 381 ----------QFLATVSHEIRTPMNGILGMLALLLDTDLRSTQRDYAQTAQACGKSLITL 430

Query: 422 INDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIG 480
           IN++LD +K+E+G ++LEA  F  R ++  VL   +  S +K + L   ++D VP  V+G
Sbjct: 431 INEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSDESRRKGVELAVFVSDKVPGIVMG 490

Query: 481 DVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEK 540
           D  R RQ++TNL+ N++KFT +G + +++++  +    K+G+K  +      +++V E  
Sbjct: 491 DPGRFRQVITNLVGNSVKFTEQGHIFVQVHLAEQ---TKDGVKNNT-CLTGESESVYET- 545

Query: 541 HQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTG 600
                +TA+ QN +   KH          D+     S     ++DL   V +   V DTG
Sbjct: 546 -LSGYETAASQNTWDSLKHTIA-------DNGLYYKSATKEANDDLSQNVTVMVSVEDTG 597

Query: 601 IGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFT 660
           IGIP  A   +F  +MQ  +  +R YGGTG+GL+I K LVELMGG++   S+   GSTF+
Sbjct: 598 IGIPIQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIGFISRPQIGSTFS 657

Query: 661 FIL------PYQVSPIEENSDD 676
           F L       Y VS ++++  D
Sbjct: 658 FTLNLLRCEKYAVSDLKKSHSD 679



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 8/143 (5%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  ++  ++G  A+  +Q   N+D   MD+ MP MDG 
Sbjct: 841  KILVVDDNLVNRRVAAGALKKFGADVECADSGKAALSLLQIPHNFDACFMDIQMPEMDGF 900

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK-RIPIIAMTANALSESAEECFAN 978
            +ATR IR  E   N        +   + S G++   K  +PI+AMTA+ +  + E+C   
Sbjct: 901  EATRRIRDLERVANEQ------LNGGLNSDGATKWRKWHMPILAMTADVIHATLEKCLKC 954

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GMD +VSKP   + L + + ++F
Sbjct: 955  GMDGYVSKPFEEENLYQAVSKFF 977


>gi|428308622|ref|YP_007119599.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
 gi|428250234|gb|AFZ16193.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
          Length = 1157

 Score =  174 bits (442), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 138/429 (32%), Positives = 206/429 (48%), Gaps = 70/429 (16%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIP + +  LF+ + QV A   RKYGGTGLGLAI KQL E+MGGR+ V S+V+ 
Sbjct: 608  VKDTGIGIPPDRIDRLFKSFSQVDASTTRKYGGTGLGLAIGKQLSEMMGGRMWVESQVNR 667

Query: 656  GSTFTFILPYQV----SPIEENSDDPD----DLSDMADQDSVTDDVTA-----GFFQFQP 702
            GSTF F L        SP+  ++  P      L  + D D+    +T      G   +  
Sbjct: 668  GSTFYFTLVAAATADSSPMNSDNFPPQFQGKRLLIVDDNDTYRQILTQQLQSWGMLIYGA 727

Query: 703  RTLGSLFS--SNGTSRSKKLL----PNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLE 756
             +    F   + G      LL    P   G   A K+  +S             +T PL 
Sbjct: 728  ASAAEAFDWLNQGQPLDMALLDMQMPGMDGLTLATKIRSYSN-----------YQTLPLV 776

Query: 757  DACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANR 816
               S+               +  E  N+T V       V+  ++   P  +S   S  N+
Sbjct: 777  LLTSI---------------NGLERANQTHVP------VDLAAFLTKPIKQSQLDSVLNQ 815

Query: 817  EMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAK 876
             +  +S +  P         P  + ++P   + ++P        +ILL EDN +N  VA 
Sbjct: 816  ILAGSSISVNP--------LPVTLPENPLQLATQLPL-------RILLAEDNGVNQKVAL 860

Query: 877  SMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLI-RSFEDTGNWD 935
             ++K++G+  DVV+NG+E + AV+ ++YD++LMDV MP+MDGL ATR I +     G + 
Sbjct: 861  HLLKRIGYQADVVSNGLEVLDAVKRKSYDVVLMDVQMPLMDGLTATRCICQELSGDGEFG 920

Query: 936  AAAE--AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKL 993
             A +     ++  PS  +++H KR  IIAMTANA+    EEC   GMD ++ KP++ + L
Sbjct: 921  EANQNSQNSDRNQPSKPATSH-KRPRIIAMTANAMQGDREECLNAGMDDYLCKPISLKAL 979

Query: 994  KECLEQYFP 1002
             + L    P
Sbjct: 980  IQALSHCQP 988



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 103/174 (59%), Gaps = 4/174 (2%)

Query: 340 MAKLREEIAVQKAKET--ELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           +A+L    + Q+  +T  +L K    +EE  R K Q LA MSHEIR+P+  ++ M  +L 
Sbjct: 388 LAQLELVASSQELSQTNQQLEKAKAESEEATRIKSQFLANMSHEIRTPMNAIIGMTGLLL 447

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            T+L  +QR  +    SS + +L LINDILDLSK+ESG ++LE   F  +  ++  L   
Sbjct: 448 TTELTPQQRDFVTTAQSSSEALLALINDILDLSKIESGSVELEKQAFNLQSCIEESLDIL 507

Query: 457 AA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           A  + +K + L   +    P  ++GDV R+RQIL NL+SNA+KFT  G+V + +
Sbjct: 508 ALKAAEKGIELAYGMHPQTPSIIVGDVTRLRQILVNLVSNAVKFTQTGEVVVSV 561


>gi|109631214|gb|ABG35783.1| SHK279 [Striga asiatica]
          Length = 984

 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 190/349 (54%), Gaps = 29/349 (8%)

Query: 323 VNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIR 382
           + YM       + K E      +E+ VQ A+  ++ K+           Q LAT+SHEIR
Sbjct: 342 IGYMAYSAVSHIVKVEDDFNKMQELKVQ-AEAADVAKS-----------QFLATVSHEIR 389

Query: 383 SPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAK 442
           +P+ G++ M ++L +T+L   QR         G+ ++ LIN++LD +K+E+G ++LEA  
Sbjct: 390 TPMNGILGMLQLLLDTELSSTQRDFAQTAQGCGEALITLINEVLDRAKIEAGKLELEAVP 449

Query: 443 FRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTP 501
           F  R ++  VL   +  S QK + L   ++D VP  V+GD  R RQ++ NL+ N++KFT 
Sbjct: 450 FDLRSILDDVLSLFSEKSRQKGIELAVFVSDKVPEIVVGDPGRFRQVIINLVGNSVKFTE 509

Query: 502 EGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGE 561
           EG + +++++  +        ++ +K  +  T +  + +  PKSQ+ S  N    K+  +
Sbjct: 510 EGHIFVQVHLAEQ--------RKPTKDAKIETYSNGDSETTPKSQSWS-FNTLSGKQVAD 560

Query: 562 GYQ--DHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVS 619
                D +   DP T   + N+  E +  TV     V DTGIGIPE A   +F  +MQ  
Sbjct: 561 NCSSLDEEFLYDP-TRDENNNAKSESVRLTV----SVEDTGIGIPEQAQKRVFTPFMQAD 615

Query: 620 ADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           +  +R YGGTG+GL+I K LVELMGG+++  S+   GST +F + +Q S
Sbjct: 616 SSTSRNYGGTGIGLSISKCLVELMGGQMSFNSRPQVGSTSSFTVEFQRS 664



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 77/142 (54%), Gaps = 10/142 (7%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   + + G  +  V +G EA+  +Q   ++D   MD+ MP MDG 
Sbjct: 845  KILVVDDNVVNRRVAAGALNKFGAEVRCVGSGHEALACLQIPHDFDACFMDIQMPQMDGF 904

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATRLIR  E      + A+ G        G   H   +PI+AMTA+ +  + +EC   G
Sbjct: 905  EATRLIREME------SKAKMGNNNKSDGIGEWRH---MPILAMTADVIHATLDECLKCG 955

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +V KP   + L + + ++F
Sbjct: 956  MDGYVPKPFKEKSLYQAVAKFF 977


>gi|428213858|ref|YP_007087002.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
 gi|428002239|gb|AFY83082.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
          Length = 1437

 Score =  173 bits (438), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/314 (37%), Positives = 165/314 (52%), Gaps = 40/314 (12%)

Query: 369 RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           RAK + LATMSHEIR+P+  V+ M  +L +T L+ EQR  +  + +SGD +L +INDILD
Sbjct: 680 RAKSEFLATMSHEIRTPMNAVIGMTGLLLDTDLNPEQRDFVETVRASGDALLTIINDILD 739

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIR 486
            SK+ESG + LE   F  R  ++  L   A+ + +K + L   I    P  +IGDV R+R
Sbjct: 740 FSKIESGKLDLEQQPFNLRSCIEDSLDLLASRAAEKGVELAYLIEPSTPEMIIGDVTRVR 799

Query: 487 QILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQ 546
           QIL NL+SNA+KFT +G+V + +     PP    G+          TD++          
Sbjct: 800 QILVNLLSNAVKFTEKGEVVVSVSASAIPPQQAGGI---------GTDSL---------- 840

Query: 547 TASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606
              DQ    +  +G  ++D   D   G P+               I+  V DTGIGIP  
Sbjct: 841 ILKDQ----ETTNGHLHKDLNPDSSAGNPLCQ-------------IQFTVSDTGIGIPPE 883

Query: 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGS--TFTFILP 664
            +  LF+ + QV +   R+YGGTGLGLAI K+L ELMGGR+ V S    G      F  P
Sbjct: 884 RMNRLFKSFSQVDSSTTREYGGTGLGLAISKRLSELMGGRMWVVSGEGVGGDPDPAFQWP 943

Query: 665 YQVSPIEENSDDPD 678
              S  E++S  PD
Sbjct: 944 IASSVQEQSSPMPD 957



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 79/140 (56%), Gaps = 21/140 (15%)

Query: 859  KP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            KP +ILL ED+ +N  VA  ++ +LG+  DV  NG+E + A+  Q+YD++LMDV MP MD
Sbjct: 1151 KPLRILLAEDHLVNQKVALQILHRLGYRADVAGNGIEVLQALDRQHYDVVLMDVHMPEMD 1210

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            GL ATR I                 + A+   G  +H  R  IIAMTANA+    E C  
Sbjct: 1211 GLAATRQI----------------CQDAL--DGRLSHRPR--IIAMTANAMQGDRELCLD 1250

Query: 978  NGMDSFVSKPVTFQKLKECL 997
             GMD ++SKP+   +L E L
Sbjct: 1251 AGMDDYISKPIRMPELVEAL 1270


>gi|38347753|dbj|BAD01586.1| histidine kinase 3 [Zea mays]
          Length = 1049

 Score =  173 bits (438), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 109/310 (35%), Positives = 173/310 (55%), Gaps = 23/310 (7%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+LD  Q+  +     SG +++ LIN++LDL+K+
Sbjct: 447 QFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQQDFVVTAQESGKVLINLINEVLDLAKI 506

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R+++ +V+       Q K + L   ++D VP  +IGD  R RQI+T
Sbjct: 507 ESGRIELEAVPFDVRDILDNVISLFYEKSQAKGIELAVLVSDQVPDVLIGDPWRFRQIIT 566

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + +++++V E       L +K   +   +       H  +    SD
Sbjct: 567 NLVGNSMKFTEQGHIFVQVHLVKE-------LSRKGNNFCDVS------AHNREILYDSD 613

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
            +   +   G    D     +  T   + N   +    T+ +   V DTGIGI ++A   
Sbjct: 614 NSMLWNTLSGLEVADSWRSLENFTMFKNSNGETD----TIRLAVRVEDTGIGITKDAQMR 669

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
           +F  +MQ  +  +R YGGTG+GL+I K+LVELMGG +  TSK   GSTF+F   ++    
Sbjct: 670 IFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAIFK---- 725

Query: 671 EENSDDPDDL 680
            EN   P D+
Sbjct: 726 -ENRGCPGDM 734



 Score = 89.7 bits (221), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 82/142 (57%), Gaps = 5/142 (3%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA   +K+ G ++  V++G +A+  ++    +D   MDV MP MDG 
Sbjct: 906  QILVVDDNAVNRKVAAGSLKKYGSTVTCVDSGSDAIDMLKPPHTFDACFMDVQMPEMDGF 965

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATRLIRS E   N D       E +  + G+  H+  +PI+AMTA+ +  + E+C   G
Sbjct: 966  EATRLIRSIEKKIN-DMIMMG--EISANNYGNKAHW-HVPILAMTADVIQATFEKCMQCG 1021

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   Q+L   +  + 
Sbjct: 1022 MDGYVSKPFEEQQLYSAVAHFL 1043


>gi|392549462|ref|ZP_10296599.1| GGDEF domain protein [Pseudoalteromonas rubra ATCC 29570]
          Length = 1378

 Score =  173 bits (438), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 133/419 (31%), Positives = 201/419 (47%), Gaps = 69/419 (16%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            + C + DTGIGIPE  L +LF  ++QV A   RKYGGTGLGL+I K+L +L+GG ++V+S
Sbjct: 1012 LTCRIQDTGIGIPEEMLSSLFDSFIQVDASTTRKYGGTGLGLSITKRLCQLLGGDVSVSS 1071

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDDLSD------MADQDSVTDDVTAGFFQFQPRTL 705
             V  GS F F    QV+P E    +    S       + D D+ +++V     +   R  
Sbjct: 1072 TVGHGSCFEFTC--QVNPCEITEPNAPAFSSLNIHALLVDSDTSSNEVIKHQLE---RWQ 1126

Query: 706  GSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVA 765
              +  ++   ++ ++L      AS+  +  FS T  +  S    +E         +  + 
Sbjct: 1127 VQVSEAHSAEQALQILS-----ASSIDIVFFSRTLPTMSSELMTREIRQNRQLSQLKLIM 1181

Query: 766  ET-LSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKT 824
             T L E   +   SP P +                +F  PAT+         ++++    
Sbjct: 1182 MTLLDEQFDAVESSPVPLD---------------GYFTKPATQ--------HDLMKALSG 1218

Query: 825  NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
             EP K  E    P     S   S A+  +        +LLVEDNK+N +VA  +++ LG 
Sbjct: 1219 LEPSKNQEEDTGP-----SHKQSQADTQDFPWAKDTHVLLVEDNKVNQLVATRILEHLGV 1273

Query: 885  SIDVVNNGVEAVHAV---QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAG 941
            +ID+  NG+EA+  +   + Q Y L+LMD  MP MDG +ATR IRS          A+AG
Sbjct: 1274 TIDIAENGLEALDKLRNTETQAYTLLLMDCQMPKMDGYEATRRIRS----------AQAG 1323

Query: 942  IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                       NH+  IPIIAMTANA+    ++C   GMD +++KP+   K+ E LE +
Sbjct: 1324 -----------NHYTDIPIIAMTANAMQGDRQKCLDAGMDDYITKPIESAKVTEKLEYW 1371



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 105/177 (59%), Gaps = 6/177 (3%)

Query: 335 RKREKMAKLREEI----AVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVV 389
           R+++ + +L E++    A  K++  EL   +   E+  R K + LA MSHEIR+P+ GV+
Sbjct: 819 RQKQFVVQLEEQVSQKTASLKSQAMELEAALKKAEQATRLKSEFLANMSHEIRTPMNGVL 878

Query: 390 SMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449
            M E+L +++L  EQ   +G+  SS   +L LINDILD SK+E+  ++LE   F  R++ 
Sbjct: 879 GMLELLKHSELTPEQEHSVGIASSSAHSLLSLINDILDFSKIEADKLELEFIDFDVRQLF 938

Query: 450 KHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           + + ++ A   Q K + L  D+       +  D  RIRQI  N++SNAIKFT +G++
Sbjct: 939 EQLAESMALGAQTKGVGLVVDLTGVQTAMINSDPGRIRQIAANILSNAIKFTEQGEI 995


>gi|410664806|ref|YP_006917177.1| MmoS protein [Simiduia agarivorans SA1 = DSM 21679]
 gi|409027163|gb|AFU99447.1| MmoS protein [Simiduia agarivorans SA1 = DSM 21679]
          Length = 798

 Score =  173 bits (438), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/347 (33%), Positives = 171/347 (49%), Gaps = 75/347 (21%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
             N M   + + + +R+    +   +  +K ++ E  +   + E   RAK Q LATMSHE
Sbjct: 232 AFNQMRTSLLEDIEQRQA---IETALLTEKQQKLESERQKAVAETANRAKSQFLATMSHE 288

Query: 381 IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
           IR+P+ GV+ M E+L +T L+  Q+  L V+  SG+ ++ +INDILD SK+E+G M+LE+
Sbjct: 289 IRTPMNGVIGMVELLRDTPLNATQQHYLDVIHRSGETLIDIINDILDYSKIEAGKMELES 348

Query: 441 AKFRPREVVKHVLQTAAASLQKI-LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKF 499
           A F   ++V+  +Q   A+  K  + L G ++   P+ ++GD  R+RQ+L NLI NA KF
Sbjct: 349 APFNLEDLVEDCVQLFGATANKRHIELIGSVSPTTPLNLMGDPTRLRQLLINLIGNAFKF 408

Query: 500 TPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKH 559
           T EG      YV+ E                    A +EE                    
Sbjct: 409 TSEG------YVIVE--------------------ARREE-------------------- 422

Query: 560 GEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVS 619
                    + DP  P                IR  + D+GIGI +  +  LF+ + Q  
Sbjct: 423 ---------NSDPDQPT---------------IRFSIRDSGIGINDEGMARLFQSFSQAD 458

Query: 620 ADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
           +   RK+GGTGLGLAICK+L E+MGG + V S    GSTF F   +Q
Sbjct: 459 SSTTRKFGGTGLGLAICKRLAEMMGGEIGVVSTEGKGSTFWFTARFQ 505



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 23/141 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC--QNYDLILMDVCMPVMDG 918
           K+L+ EDN +N MV K M+ + G   ++V NG  A  AV     ++DL+LMD  MP MDG
Sbjct: 667 KVLVAEDNNVNRMVIKGMLGKFGIEPEMVENGKLAFEAVTAPDADFDLVLMDCEMPEMDG 726

Query: 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            +ATR IR +E                       N      I+A+TA+A+ E  E  +  
Sbjct: 727 FEATRCIREYE---------------------RRNMLPDTLIVALTAHAMQEHREAVYQA 765

Query: 979 GMDSFVSKPVTFQKLKECLEQ 999
           GM+ ++SKPVT   LK   E+
Sbjct: 766 GMNHYMSKPVTVDALKNAFEK 786


>gi|449518427|ref|XP_004166243.1| PREDICTED: histidine kinase 4-like, partial [Cucumis sativus]
          Length = 756

 Score =  172 bits (437), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 165/298 (55%), Gaps = 19/298 (6%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T+L   QR       + G  ++ LIN++LD +K+
Sbjct: 135 QFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKI 194

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K + L   ++D VP  V+GD  R RQ++T
Sbjct: 195 EAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQVIT 254

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS----Q 546
           NL+ N++KFT  G + +K+ +  E       +K ++    ++ D     KHQ ++    +
Sbjct: 255 NLVGNSVKFTEHGHIFVKVQL-AEQSMVSTNIKSETHVNGNSEDGASHNKHQFETLSGFE 313

Query: 547 TASDQNGFHDKKH--GEGYQDHKHDDDPGTPVSHGNSM-DEDLEATVWIRCDVYDTGIGI 603
            A +QN +   KH   E +Q          P    N M   ++   V +   V DTGIGI
Sbjct: 314 AADNQNSWDTFKHLANEEFQ----------PNGSSNLMATNEISDIVTVMISVEDTGIGI 363

Query: 604 PENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           P +A   +F ++MQ  +  +R YGGTG+GL I K LVELMGG++   SK   GSTF+F
Sbjct: 364 PLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKPQVGSTFSF 421



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 12/145 (8%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DNK+N  VA   +K+ G  ++ V +G  A+  +Q   ++D   MD+ MP MDG 
Sbjct: 612  KILVVDDNKVNRRVAAGALKKFGADVECVESGKAALALLQLPHSFDACFMDIQMPEMDGF 671

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK---RIPIIAMTANALSESAEECF 976
            +ATR IR  E   N     E  I +   S+G  N  K    +PI+AMTA+ +  + +EC 
Sbjct: 672  EATRRIRMMESKEN-----EVLIRE---SNGKENARKDEWHVPILAMTADVIHATYDECL 723

Query: 977  ANGMDSFVSKPVTFQKLKECLEQYF 1001
              GMD +VSKP   + L + + ++F
Sbjct: 724  KCGMDGYVSKPFEEENLYQAVAKFF 748


>gi|255573224|ref|XP_002527541.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
 gi|223533091|gb|EEF34850.1| histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
          Length = 1011

 Score =  172 bits (437), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 165/299 (55%), Gaps = 12/299 (4%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T L   QR       + G  ++ LIN++LD +K+
Sbjct: 392 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKALIALINEVLDRAKI 451

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K + L   ++D VP  V+GD  R RQI+T
Sbjct: 452 EAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGIELAVFVSDKVPEIVLGDPGRFRQIIT 511

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS----Q 546
           NL+ N++KFT  G + +K+++  E   A    K  S     ++D +  +  Q K+    +
Sbjct: 512 NLVGNSVKFTERGHIFVKVHL-DENAKATAFAKADSCLNGGSSDVIVSDSCQFKTLSGFE 570

Query: 547 TASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606
            A D+NG+   KH    +D + +       ++      D    V +   V DTGIGIP +
Sbjct: 571 AADDRNGWEAFKHLVADEDFQSNGSLNVLTTN------DACENVTLVVSVEDTGIGIPLH 624

Query: 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
           A   +F  +MQ  +  +R YGGTG+GL+I K LVELMGG ++  S+   GSTF+F   +
Sbjct: 625 AQDRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGHISFVSRPQVGSTFSFTAAF 683



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 83/143 (58%), Gaps = 7/143 (4%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G +++  ++G  A+  +Q   ++D   MD+ MP MDG 
Sbjct: 866  KILVVDDNMVNRRVAAGALKKFGANVECADSGKAALKLLQLPHSFDACFMDIQMPEMDGF 925

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK-RIPIIAMTANALSESAEECFAN 978
            +ATR IR  E   N     E    Q+M   G++   +  +PI+AMTA+ +  + +EC  +
Sbjct: 926  EATRRIRQMESQAN-----EQINGQSMAEGGAARKGEWHVPILAMTADVIHATYDECLKS 980

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GMD +VSKP   + L + + ++F
Sbjct: 981  GMDGYVSKPFEEENLYQAVAKFF 1003


>gi|449445312|ref|XP_004140417.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
          Length = 1004

 Score =  172 bits (437), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 107/298 (35%), Positives = 165/298 (55%), Gaps = 19/298 (6%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T+L   QR       + G  ++ LIN++LD +K+
Sbjct: 383 QFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKI 442

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K + L   ++D VP  V+GD  R RQ++T
Sbjct: 443 EAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDKVPEIVMGDPGRFRQVIT 502

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS----Q 546
           NL+ N++KFT  G + +K+ +  E       +K ++    ++ D     KHQ ++    +
Sbjct: 503 NLVGNSVKFTEHGHIFVKVQL-AEQSMVSTNIKSETHVNGNSEDGASHNKHQFETLSGFE 561

Query: 547 TASDQNGFHDKKH--GEGYQDHKHDDDPGTPVSHGNSM-DEDLEATVWIRCDVYDTGIGI 603
            A +QN +   KH   E +Q          P    N M   ++   V +   V DTGIGI
Sbjct: 562 AADNQNSWDTFKHLANEEFQ----------PNGSSNLMATNEISDIVTVMISVEDTGIGI 611

Query: 604 PENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           P +A   +F ++MQ  +  +R YGGTG+GL I K LVELMGG++   SK   GSTF+F
Sbjct: 612 PLSAQGRVFMRFMQADSSTSRNYGGTGIGLDISKCLVELMGGQINFVSKPQVGSTFSF 669



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 12/145 (8%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DNK+N  VA   +K+ G  ++ V +G  A+  +Q   ++D   MD+ MP MDG 
Sbjct: 860  KILVVDDNKVNRRVAAGALKKFGADVECVESGKAALALLQLPHSFDACFMDIQMPEMDGF 919

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK---RIPIIAMTANALSESAEECF 976
            +ATR IR  E   N     E  I +   S+G  N  K    +PI+AMTA+ +  + +EC 
Sbjct: 920  EATRRIRMMESKEN-----EVLIRE---SNGKENARKDEWHVPILAMTADVIHATYDECL 971

Query: 977  ANGMDSFVSKPVTFQKLKECLEQYF 1001
              GMD +VSKP   + L + + ++F
Sbjct: 972  KCGMDGYVSKPFEEENLYQAVAKFF 996


>gi|428312486|ref|YP_007123463.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
 gi|428254098|gb|AFZ20057.1| PAS domain S-box [Microcoleus sp. PCC 7113]
          Length = 1949

 Score =  172 bits (437), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 119/331 (35%), Positives = 174/331 (52%), Gaps = 37/331 (11%)

Query: 335  RKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAE 393
            R+RE++A+  + IA++ +K+          E   RAK + LATMSHEIR+P+  V+ M  
Sbjct: 1145 RQREQLAE--QNIALETSKQA--------AEAANRAKSEFLATMSHEIRTPMNAVIGMTG 1194

Query: 394  ILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL 453
            +L +T++  +Q Q +  + +SG+ +L +INDILD SK+ESG ++LE   F+ R  ++  L
Sbjct: 1195 LLLDTEVTPQQHQFVETIRNSGEALLTIINDILDFSKIESGKLELEEQPFKLRMCIEESL 1254

Query: 454  Q-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
               A  + +K L L   I    P+ + GDV R+RQIL NL+SNA+KFT  G+V +     
Sbjct: 1255 DLLAPKAAEKELELAYLIDSQTPVTIAGDVTRLRQILVNLLSNAVKFTRSGEVTV----- 1309

Query: 513  PEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDP 572
                              S T      KH+   ++  +  GF                DP
Sbjct: 1310 ------------------SVTAKGVPVKHEVGRESVGNNPGFSISPSPNTQPQLDKPCDP 1351

Query: 573  GTPVSHGNSMDEDLEATVW--IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
            GT     +S+        +  I+  V DTGIGIP   L  LF+ + QV +  +R YGGTG
Sbjct: 1352 GTRQDTLSSVSVHPVPYPYYEIQFAVKDTGIGIPTERLDRLFQPFSQVDSSTSRHYGGTG 1411

Query: 631  LGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
            LGL I K+L E+MGGR+ V S+V  GS F F
Sbjct: 1412 LGLVISKRLCEMMGGRIWVESEVGKGSIFYF 1442



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 87/165 (52%), Gaps = 27/165 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KILL EDN +N  VA  ++++LG+  DVV NG+E + AV  Q+YD++LMDV MP MDGL 
Sbjct: 1613 KILLAEDNVVNQQVALHLLQRLGYRADVVGNGLEVLEAVHRQSYDVVLMDVQMPEMDGLT 1672

Query: 921  ATRLIRSFEDTGNW--DAAAEAGIE------------------------QAMPSSGSSNH 954
            A   I S E +  W  +AA E  I                         + +P   +S  
Sbjct: 1673 AAHRI-SQESSFAWELEAAGENLITAFPGVSLTETHQQSNSPTSTNRPPEKVPGQPNSKS 1731

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
             KR  IIAMTANA+    E C   GMD ++SKP+  ++L   L +
Sbjct: 1732 NKRPRIIAMTANAMQGDREMCLEAGMDDYISKPIRMKELVRALSK 1776



 Score = 43.9 bits (102), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 28/162 (17%)

Query: 841  SQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV- 899
            S +P+      P+ + K   ++L+V+DN  N  +     K  G      ++G EA+  + 
Sbjct: 1451 SSTPTDLDVAQPQLEGK---RLLIVDDNATNRKILTLQGKSWGMLTRAAHSGREALDWLS 1507

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
            Q + +DL ++D+ MP MDGL     IR                            ++ +P
Sbjct: 1508 QGELFDLAILDMQMPGMDGLTLATEIR------------------------KKPGYQELP 1543

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            ++ +T+    ES++    +   +F++KP+   +L E L Q  
Sbjct: 1544 LVMLTSIGKPESSDPSQMSHFAAFLNKPIKQSQLYESLNQVL 1585


>gi|162461250|ref|NP_001104867.1| histidine kinase3 [Zea mays]
 gi|38347688|dbj|BAD01585.1| histidine kinase 3 [Zea mays]
          Length = 1201

 Score =  172 bits (437), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/310 (35%), Positives = 173/310 (55%), Gaps = 23/310 (7%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+LD  Q+  +     SG +++ LIN++LDL+K+
Sbjct: 599 QFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQQDFVVTAQESGKVLINLINEVLDLAKI 658

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R+++ +V+       Q K + L   ++D VP  +IGD  R RQI+T
Sbjct: 659 ESGRIELEAVPFDVRDILDNVISLFYEKSQAKGIELAVLVSDQVPDVLIGDPWRFRQIIT 718

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + +++++V E       L +K   +   +       H  +    SD
Sbjct: 719 NLVGNSMKFTEQGHIFVQVHLVKE-------LSRKGNNFCDVS------AHNREILYDSD 765

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
            +   +   G    D     +  T   + N   +    T+ +   V DTGIGI ++A   
Sbjct: 766 NSMLWNTLSGLEVADSWRSLENFTMFKNSNGETD----TIRLAVRVEDTGIGITKDAQMR 821

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
           +F  +MQ  +  +R YGGTG+GL+I K+LVELMGG +  TSK   GSTF+F   ++    
Sbjct: 822 IFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAIFK---- 877

Query: 671 EENSDDPDDL 680
            EN   P D+
Sbjct: 878 -ENRGCPGDM 886



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 82/142 (57%), Gaps = 5/142 (3%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA   +K+ G ++  V++G +A+  ++    +D   MDV MP MDG 
Sbjct: 1058 QILVVDDNAVNRKVAAGSLKKYGSTVTCVDSGSDAIDMLKPPHTFDACFMDVQMPEMDGF 1117

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATRLIRS E   N D       E +  + G+  H+  +PI+AMTA+ +  + E+C   G
Sbjct: 1118 EATRLIRSIEKKIN-DMIMMG--EISANNYGNKAHW-HVPILAMTADVIQATFEKCMQCG 1173

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   Q+L   +  + 
Sbjct: 1174 MDGYVSKPFEEQQLYSAVAHFL 1195


>gi|413934338|gb|AFW68889.1| putative histidine kinase family protein [Zea mays]
          Length = 1201

 Score =  172 bits (436), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/310 (35%), Positives = 173/310 (55%), Gaps = 23/310 (7%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+LD  Q+  +     SG +++ LIN++LDL+K+
Sbjct: 599 QFLATVSHEIRTPMNGVLGMLQMLMDTELDTTQQDFVVTAQESGKVLINLINEVLDLAKI 658

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R+++ +V+       Q K + L   ++D VP  +IGD  R RQI+T
Sbjct: 659 ESGRIELEAVPFDVRDILDNVISLFYDKSQAKGIELAVLVSDQVPDVLIGDPWRFRQIIT 718

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + +++++V E       L +K   +   +       H  +    SD
Sbjct: 719 NLVGNSMKFTEQGHIFVQVHLVKE-------LNRKGNNFCDVS------AHNREILYDSD 765

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
            +   +   G    D     +  T   + N   +    T+ +   V DTGIGI ++A   
Sbjct: 766 NSMLWNTLSGLEVADSWRSLENFTMFKNSNGETD----TIRLAVRVEDTGIGITKDAQMR 821

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
           +F  +MQ  +  +R YGGTG+GL+I K+LVELMGG +  TSK   GSTF+F   ++    
Sbjct: 822 IFTPFMQADSSTSRTYGGTGIGLSITKRLVELMGGEIGFTSKSGVGSTFSFTAIFK---- 877

Query: 671 EENSDDPDDL 680
            EN   P D+
Sbjct: 878 -ENRGCPGDM 886



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA   +K+ G  +  V++G +A+  ++    +D   MDV MP MDG 
Sbjct: 1058 QILVVDDNAVNRKVAAGSLKKYGSKVTCVDSGSDAIDMLKPPHTFDACFMDVQMPEMDGF 1117

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATRLIRS E   N D       E +  + G+  H+  +PI+AMTA+ +  + E+C   G
Sbjct: 1118 EATRLIRSIEKKIN-DMIMMG--EISANNYGNKAHW-HVPILAMTADVIQATFEKCMQCG 1173

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   Q+L   +  + 
Sbjct: 1174 MDGYVSKPFEEQQLYFAVAHFL 1195


>gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 844

 Score =  172 bits (436), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 120/346 (34%), Positives = 168/346 (48%), Gaps = 66/346 (19%)

Query: 323 VNYMGMDVTDQVRKREKMAKLRE---EIAVQKAKETELNKTIHITEETMRAKQMLATMSH 379
           + Y       Q+++ E    LRE   ++  + A    LN+ +   E T+   + LA MSH
Sbjct: 139 LRYHSKAFLGQLQRDEAYQALRESQKQLVEKNASLVALNQKLE--EATLAKSEFLANMSH 196

Query: 380 EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
           E+R+P+ GV+ M  +L +T+L  EQR+ +    SS D +L +INDILD SK+ESG + LE
Sbjct: 197 EVRTPMNGVIGMTALLLDTELTDEQREYVEATRSSADAMLTIINDILDFSKIESGKLDLE 256

Query: 440 AAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
           +  F     ++  L   A  + +K L L   + D +P  ++GDV R+RQIL NLI NA+K
Sbjct: 257 SHPFELHTCIEEALDLLAPKAAEKDLDLAYSVDDAIPKILVGDVTRLRQILVNLIGNAVK 316

Query: 499 FTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKK 558
           FT EG+V I++                              K  PK              
Sbjct: 317 FTNEGEVFIQV------------------------------KPAPK-------------- 332

Query: 559 HGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVW-IRCDVYDTGIGIPENALPTLFRKYMQ 617
                  H +D D       G  M        W ++  V DTG+GIP +    LF+ + Q
Sbjct: 333 -------HFNDRDRSASSITGPDM--------WMLQFSVRDTGVGIPIDKQHRLFKSFQQ 377

Query: 618 VSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
           V A   R YGGTGLGLAICK+L ELMGG + V S    GSTF F +
Sbjct: 378 VDASTTRHYGGTGLGLAICKKLSELMGGDIQVESDAGKGSTFHFTI 423



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 23/140 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL +DN IN  V  +++++LG+  DV NNG+E + A+  Q YD+IL+DV MP +DG +
Sbjct: 591  RILLADDNPINQKVGLNVLRRLGYRADVANNGLEVLRALDRQPYDIILLDVQMPELDGFE 650

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
             T  IR       W                     KR  ++AMT NAL    E+C   GM
Sbjct: 651  TTSSIRE-----RWPLG------------------KRPRVVAMTGNALLGDREKCLDAGM 687

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D ++SKP+   +L+  LE++
Sbjct: 688  DDYISKPIRIGELQSALERW 707



 Score = 40.8 bits (94), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-YDLILMDVCMPVMDGL 919
           ++L+VEDN  N  +     +Q G   D   N  +A+  V  Q  YD  ++DV +P  DG+
Sbjct: 447 RVLIVEDNATNRQILSHRCRQWGMLPDEAANAEKALEMVANQKYYDAAILDVQLPGFDGI 506

Query: 920 KATRLIR 926
           K  + IR
Sbjct: 507 KLAQAIR 513


>gi|302036175|ref|YP_003796497.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604239|emb|CBK40571.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 415

 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/336 (36%), Positives = 169/336 (50%), Gaps = 63/336 (18%)

Query: 334 VRKREKMAKLREEIA-VQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
           VR  + + +LRE  A + +A++  +        E  R K + LATMSHEIR+P+ GV+ M
Sbjct: 127 VRADQVLQELRESQATLTQARDAAI--------EGARLKSEFLATMSHEIRTPMNGVLGM 178

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
            + L +T L  EQ      + SSGD +L +INDILD SK+ESG + LE   F     +  
Sbjct: 179 TDWLLDTPLTAEQLDCAQTIRSSGDALLVIINDILDFSKIESGKLSLELLDFDLSTFLDR 238

Query: 452 VLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
           V+       Q K L+L   IA+DVP  + GD  R++QIL+NL++NAIKF+  G V + + 
Sbjct: 239 VMALFGERAQRKGLLLTSRIAEDVPGSLCGDPARLQQILSNLLANAIKFSEHGSVSVLVE 298

Query: 511 VVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDD 570
           +   P  A++GL+                              F   ++GE     +   
Sbjct: 299 LDQRP--AEQGLE------------------------------FPATRYGEPSAQQEQ-- 324

Query: 571 DPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
                V+H             IR  V D GIGI  +A   LF+ ++Q      RKYGGTG
Sbjct: 325 -----VTH-------------IRFSVSDNGIGIEPSAFSKLFQPFVQADGSTTRKYGGTG 366

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
           LGLAICKQLVELMGG +   S+   GS F F +P Q
Sbjct: 367 LGLAICKQLVELMGGHIGAESEPGSGSIFRFTVPLQ 402



 Score = 48.1 bits (113), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 24/133 (18%)

Query: 856 PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
           P   P  L+ +D+ I  M A+  ++Q G  ++   NG EA    Q    D++L+DV MP 
Sbjct: 6   PGRAPYALITDDDIIIRMFAREALEQAGWVVEEAQNGSEACELFQKCPPDVVLLDVMMPG 65

Query: 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
           MDG      +R                   +P        +  PI+ MT     ES  + 
Sbjct: 66  MDGFATCAALRR------------------LPGG------EHTPILIMTGLDDFESITKA 101

Query: 976 FANGMDSFVSKPV 988
           +  G   F+ KP+
Sbjct: 102 YDAGATDFIVKPL 114


>gi|118790708|tpd|FAA00251.1| TPA: histidine kinase [Oryza sativa Japonica Group]
          Length = 970

 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/321 (35%), Positives = 174/321 (54%), Gaps = 22/321 (6%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L  T L   Q+         G  ++ LIND+LD +K+
Sbjct: 358 QFLATVSHEIRTPMNGVLGMLDMLLGTDLSMTQKDYAQTAQMCGRALITLINDVLDRAKI 417

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  V+   ++ S +K + L   + DDVP  VIGD  R RQILT
Sbjct: 418 EAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKVVIGDPWRYRQILT 477

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ NA+KFT  G V +++ +        E  K ++    + T   K+ K +  +  A +
Sbjct: 478 NLVGNAVKFTERGHVFVRVCLA-------ENSKVEANQVLNGTMNGKDGKVETTANGAFN 530

Query: 551 Q-NGFH--DKKHGEGY------QDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGI 601
             +GF   D+++   Y          H D+     S+ N  D      V +   + DTG+
Sbjct: 531 TLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCD-----CVTLMISIEDTGV 585

Query: 602 GIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           GIP +A   +F  +MQ  +  +R YGGTG+GL+I K L ELMGG+++ TS+   GSTFTF
Sbjct: 586 GIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGSTFTF 645

Query: 662 ILPYQVSPIEENSDDPDDLSD 682
               + S  + +SD    LS+
Sbjct: 646 SAVLKRSCKDTSSDSKRSLSE 666



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 11/141 (7%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ---CQNYDLILMDVCMPVMDG 918
           IL+V+DNK+N+ VA + +K+ G  +  V +G +AV  +Q   C  +D   MDV MP MDG
Sbjct: 828 ILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDAVSLLQQPHC--FDACFMDVQMPEMDG 885

Query: 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            +ATR IR  E   N +  A   +E      GS+     +P++AMTA+ +  + EEC  +
Sbjct: 886 FEATRQIRQMEVKANEERKALDLME------GSTFVESHLPVLAMTADVIQATYEECIKS 939

Query: 979 GMDSFVSKPVTFQKLKECLEQ 999
           GMD +VSKP   ++L + + +
Sbjct: 940 GMDGYVSKPFDEEQLYQAVSR 960


>gi|218191539|gb|EEC73966.1| hypothetical protein OsI_08865 [Oryza sativa Indica Group]
          Length = 985

 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/321 (35%), Positives = 174/321 (54%), Gaps = 22/321 (6%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L  T L   Q+         G  ++ LIND+LD +K+
Sbjct: 373 QFLATVSHEIRTPMNGVLGMLDMLLGTDLSMTQKDYAQTAQMCGRALITLINDVLDRAKI 432

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  V+   ++ S +K + L   + DDVP  VIGD  R RQILT
Sbjct: 433 EAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKVVIGDPWRYRQILT 492

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ NA+KFT  G V +++ +        E  K ++    + T   K+ K +  +  A +
Sbjct: 493 NLVGNAVKFTERGHVFVRVCLA-------ENSKVEANQVLNGTMNGKDGKVETTANGAFN 545

Query: 551 Q-NGFH--DKKHGEGY------QDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGI 601
             +GF   D+++   Y          H D+     S+ N  D      V +   + DTG+
Sbjct: 546 TLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCD-----CVTLMISIEDTGV 600

Query: 602 GIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           GIP +A   +F  +MQ  +  +R YGGTG+GL+I K L ELMGG+++ TS+   GSTFTF
Sbjct: 601 GIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFTSRPFVGSTFTF 660

Query: 662 ILPYQVSPIEENSDDPDDLSD 682
               + S  + +SD    LS+
Sbjct: 661 SAVLKRSCKDTSSDSKRSLSE 681



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 11/141 (7%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ---CQNYDLILMDVCMPVMDG 918
           IL+V+DNK+N+ VA + +K+ G  +  V +G +AV  +Q   C  +D   MDV MP MDG
Sbjct: 843 ILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDAVSLLQQPHC--FDACFMDVQMPEMDG 900

Query: 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            +ATR IR  E   N +  A   +E      GS+     +P++AMTA+ +  + EEC  +
Sbjct: 901 FEATRQIRQMEVKANEERKALDLME------GSTFVESHLPVLAMTADVIQATYEECIKS 954

Query: 979 GMDSFVSKPVTFQKLKECLEQ 999
           GMD +VSKP   ++L + + +
Sbjct: 955 GMDGYVSKPFDEEQLYQAVSR 975


>gi|218887363|ref|YP_002436684.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758317|gb|ACL09216.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1223

 Score =  171 bits (434), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/298 (36%), Positives = 162/298 (54%), Gaps = 38/298 (12%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q+LA MSHE+R+PL  ++ MA++L  T L+ EQR  L V+ +SG  +L L+ND+LD S++
Sbjct: 675 QLLARMSHEVRTPLNALLGMADVLDRTPLEPEQRGYLDVLRNSGHSLLALLNDVLDFSRL 734

Query: 432 ESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQI 488
           E+G +  E   FR  E++  V   ++ AA++  + L L+  +   VP  ++GD LR+RQI
Sbjct: 735 EAGRVVPERVGFRLGEIMAQVCRQMEPAASADGRGLRLDWAVLPGVPDALVGDPLRLRQI 794

Query: 489 LTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTA 548
           L NL+SNA+KFTP G+V     V+ +P    +G      A   A+       H P + +A
Sbjct: 795 LGNLVSNAVKFTPAGRV----MVLAQP---ADGNVPDRDAGPVASPVASPVAH-PATPSA 846

Query: 549 SDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608
           S                   D+ P  P S G  M+        +   V DTGIGIP    
Sbjct: 847 SP------------------DEAPCRP-SSGRRME--------VLFSVADTGIGIPPEHQ 879

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
             +F  +MQ  +   R+YGGTGLGL+IC+ LVE++GG + + S    G+T  F LP Q
Sbjct: 880 DVVFESFMQADSSITRQYGGTGLGLSICRALVEMLGGAIWLESAPGRGTTVYFTLPMQ 937



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 21/148 (14%)

Query: 853  ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVC 912
            ++ P+    ILLVED+  N ++    ++    +I  V+NG E V A     +DL+ MD+ 
Sbjct: 1057 DSGPQRSLSILLVEDSPSNRLLFSLYLRGRPCAITEVHNGEEGVAAYATGRFDLVFMDIE 1116

Query: 913  MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            MPV+DG +ATR IR+ E             E+ +P +         PIIA+TA+ + E  
Sbjct: 1117 MPVLDGYRATRAIRALER------------ERGLPPT---------PIIALTAHVVGEFR 1155

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQY 1000
             +C A G   F++KP +  +L  C+ ++
Sbjct: 1156 NDCAAAGCTGFLAKPFSRGELLRCMARH 1183


>gi|22086084|gb|AAM90591.1|AF398464_1 protein kinase PpoS [Marinomonas mediterranea MMB-1]
          Length = 939

 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 164/648 (25%), Positives = 277/648 (42%), Gaps = 134/648 (20%)

Query: 364  TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            TE      Q LA +SHEIR+PL  ++   +IL   +LD++QR  +  +  S   +L +I+
Sbjct: 286  TESNRLKSQFLANISHEIRTPLNAIMGYIQILQKDQLDKQQRLYMDTIAQSTTNLLTIIS 345

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVL 483
            DILD SK+E+G + L+      R                      DI D+V         
Sbjct: 346  DILDFSKIEAGKLSLDLTDINIR----------------------DIVDEV--------- 374

Query: 484  RIRQILT--NLI--SNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEE 539
               QIL+  NL+  S  +   PE  + +  +V+ +P   ++ L           +A+K  
Sbjct: 375  --YQILSSANLVNASKELDLIPEFDLDVPTWVIGDPVRIRQVLTNL------IGNAIK-- 424

Query: 540  KHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDT 599
                                        H+    T V     + E   +++ +   + DT
Sbjct: 425  --------------------------FTHEGSVRTTVK----ILEKSNSSLKLSFQIIDT 454

Query: 600  GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTF 659
            G+GIPEN L  LF+ + QV     RK+GGTGLGL I K+LV+ MGG + V+S+   GS F
Sbjct: 455  GVGIPENKLDNLFKPFSQVDTSTTRKFGGTGLGLVITKKLVKQMGGNVEVSSEHGIGSNF 514

Query: 660  TFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKK 719
             F +  + S  E+  +DP   S +  + S+        ++   +T  +   +N T  S  
Sbjct: 515  RFTIVLKPSQKEQKVEDPISKSLLVFEPSLN-------YRNYLKTYLNHVGANCTFTSS- 566

Query: 720  LLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACS-VAEVAETLSEPESSFSHS 778
             L  ++   +       S+TS      N    T  LE+    VA + +    P    +  
Sbjct: 567  -LEQTVTLLN-------SQTSLDAVLLNIDSHTEKLEEIQELVAYITQQFRLPCILLTKR 618

Query: 779  PEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPD 838
            P      ++S+    H   +     P     SH+  N+ +       EP+ + E +   D
Sbjct: 619  PH-----DISKSSILHTLCSEILMTP----ISHNRLNKSL---RSLEEPKLLSEDRLYAD 666

Query: 839  -----RISQSPSSSSAEVP-ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNG 892
                  ++      + E P ET P    +IL V+D +IN+ +    ++  G  +D+  +G
Sbjct: 667  ETTTTELTTELELEAVEPPEETSPLSGIQILAVDDTQINLQLLGHWLEPHGLQVDLAYSG 726

Query: 893  VEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
             +A+   +   YDLILMD+ MP MDG++AT+ +R   +                      
Sbjct: 727  KQAIEMAKETQYDLILMDIQMPEMDGMEATQRLRKLTN---------------------- 764

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
              +   PI+A+TA+AL    ++  ++GM+++++KPV    L E + Q+
Sbjct: 765  --YVHTPIVALTAHALGSEQKQIVSSGMNAYLTKPVNEDILLETITQW 810


>gi|304312962|ref|YP_003812560.1| sensory box histidine kinase/response regulator [gamma
           proteobacterium HdN1]
 gi|301798695|emb|CBL46927.1| sensory box histidine kinase/response regulator [gamma
           proteobacterium HdN1]
          Length = 833

 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/355 (32%), Positives = 186/355 (52%), Gaps = 70/355 (19%)

Query: 328 MDVTDQVRKREKMAKLREEI-AVQKAKETELNKTIHITEETMRAK--------QMLATMS 378
           MD T  ++K  +   L E + A+Q+A     N+ I ++EE  R          Q LA MS
Sbjct: 261 MDRTQALKKTNR--HLEETVRALQQA-----NRAIRVSEENKRVAEASAEDKAQFLANMS 313

Query: 379 HEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKL 438
           HE+R+P+ GV+ M  +L  T+L  +Q+  + V   SG+++L+L+N++LDLSK+E   + L
Sbjct: 314 HELRTPMHGVLGMLSLLLETQLSSDQQHYVEVAHESGNILLELLNNVLDLSKIEHNKLAL 373

Query: 439 EAAKFRPREVVKHVL----QTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLIS 494
           E  +F  R+ ++ V+    ++A + L ++++ +      VP  V+GD +R++QI+ NL+ 
Sbjct: 374 ERVEFDLRQAIEEVVVILGESANSKLLELVVWQN---ASVPSRVVGDPIRLKQIVFNLLG 430

Query: 495 NAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGF 554
           NAIKFT +G V I   V+ E    + G+   ++A             Q + Q  S+  G 
Sbjct: 431 NAIKFTTQGHVEISYAVISEN--TRRGVVDSAEA-----------DFQAQEQDVSESVG- 476

Query: 555 HDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRK 614
                                       DE     +WIR DV DTG+G+ E+    +F  
Sbjct: 477 ----------------------------DE-----LWIRFDVSDTGVGLSEDVQEKIFEA 503

Query: 615 YMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSP 669
           + Q  +   R YGG+GLGLA+CKQ+V+LMGG + V S++  GS F F +P+  +P
Sbjct: 504 FTQADSTTTRVYGGSGLGLALCKQIVKLMGGAIGVESELGKGSKFWFEIPFGKTP 558



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 88/175 (50%), Gaps = 30/175 (17%)

Query: 836  KPDRISQSPSS--------SSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSID 887
            KP R+SQ   +         +  +P        +IL+VED+ IN  VA  ++K+LG   +
Sbjct: 676  KPIRLSQLRRAFGFIGNVHVAGALPVVHGASSLRILVVEDHPINRQVAVGLLKKLGFVPE 735

Query: 888  VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMP 947
            V  NG  A+  +Q Q YDLILMD+ MPVMDG   TR +R +E  G               
Sbjct: 736  VAENGEIALKMMQNQAYDLILMDLQMPVMDGYSTTRTVRQWEREGR-------------- 781

Query: 948  SSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                    +R PIIAMTA+ALS   E C   GMD +++KPV  + L   L ++ P
Sbjct: 782  --------RRTPIIAMTAHALSGDRERCAEAGMDDYLAKPVKAELLMAVLGKWLP 828


>gi|359473065|ref|XP_002285117.2| PREDICTED: histidine kinase 4-like [Vitis vinifera]
          Length = 1003

 Score =  169 bits (429), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/331 (34%), Positives = 175/331 (52%), Gaps = 20/331 (6%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T L   QR       + G  ++ LIN++LD +K+
Sbjct: 382 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKALITLINEVLDRAKI 441

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K L L   ++D VP  VIGD  R RQI+T
Sbjct: 442 EAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPEMVIGDPGRFRQIIT 501

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS----Q 546
           NL+ N++KFT  G + +++++        +   +      S    V     Q ++    +
Sbjct: 502 NLVGNSVKFTERGHIFVQVHLAEHTKALMDAKAETCLNGGSDEGLVSNGGSQFRTLSGCE 561

Query: 547 TASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606
            A DQN +   KH         D+D  +  S+  ++  +    V +   V DTGIGIP  
Sbjct: 562 AADDQNSWDRFKH------LIFDEDLRSDASNIMTVTSEASEKVTLMVSVEDTGIGIPLR 615

Query: 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
           A   +F  +MQ  +  +R YGGTG+GL+I K LVELMGG++   S+   GSTF+F   + 
Sbjct: 616 AQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIKFISRPQIGSTFSFTADF- 674

Query: 667 VSPIEENSDDPDDLSDMADQDSVTDDVTAGF 697
               ++N+     LSD+   +S  DD+  GF
Sbjct: 675 -GRCKKNA-----LSDLKKSNS--DDLPIGF 697



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 6/142 (4%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DNK+N  VA   +K+ G  ++   +G  A+  +Q   N+D   MD+ MP MDG 
Sbjct: 859  KILVVDDNKVNRRVAAGALKKFGADVECAESGKAALQLLQLPHNFDACFMDIQMPEMDGF 918

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E   N     E       P   ++     +PI+AMTA+ +  + ++C   G
Sbjct: 919  EATRRIRLIESKAN-----EQMNGGCTPEGAATKGEWHVPILAMTADVIHATYDKCLKCG 973

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + ++F
Sbjct: 974  MDGYVSKPFEEENLYQAVAKFF 995


>gi|168047701|ref|XP_001776308.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162672403|gb|EDQ58941.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 1148

 Score =  169 bits (428), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 196/395 (49%), Gaps = 44/395 (11%)

Query: 338 EKMAKLREEIAV-QKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILS 396
           ++M  + +++AV +K  E      +            LAT+SHEIR+P+ GV+ M  +L 
Sbjct: 416 KRMQAIEKDVAVMEKMDEDLKVAKVAAEAADKAKSNFLATVSHEIRTPMNGVIGMTNLLM 475

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            T L  +Q + + +  +SG+ ++ LIND+LDLSK+E+G M+LEA  F  R+ V  V    
Sbjct: 476 GTDLTDQQLEYVKIAQASGNALIALINDVLDLSKIEAGRMELEAVPFNIRKEVDCVFHLF 535

Query: 457 AASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV--- 512
             ++ QK L +   + + VP  VIGD  R RQIL NLI NA+KFT EG + + + V+   
Sbjct: 536 DETVQQKKLEMSMLVHNTVPTCVIGDPGRFRQILGNLIGNALKFTKEGSILVCVRVMDPN 595

Query: 513 --PEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNG-------------FHDK 557
                 F    + Q S    S+   + E   + + +    + G             F+ +
Sbjct: 596 QGSSSDFTAINVDQNSPDTHSSQGLITETLSEVELEGLRLRGGSTAPRLSIQPGTEFNSR 655

Query: 558 KHGEGYQ--DHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKY 615
           +  E ++  + K       P SH             I   V DTGIGIP++    LF+ +
Sbjct: 656 EAVESWRKWNLKTSALNCKPPSHFT-----------IIASVEDTGIGIPQHLEKRLFQPF 704

Query: 616 MQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEEN-- 673
            Q ++  +R++GGTG+GL+IC++LV+LM G +TVTS V  GS F F LP +     E   
Sbjct: 705 SQANSSTSREHGGTGIGLSICEKLVKLMNGEITVTSNVGVGSVFEFFLPVKFHDALEGKP 764

Query: 674 --SDDPDD---LSDM----ADQDSVTDDVTAGFFQ 699
             S  P     LS M     D + V  +VTA + Q
Sbjct: 765 CCSKFPAGDKRLSGMHVVLVDNNLVRQEVTANYLQ 799



 Score = 89.7 bits (221), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 13/160 (8%)

Query: 831  CEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVN 890
            C + E  +      +  + +V ++K     +IL+V+DN +N  VA SM+K+ G  +  VN
Sbjct: 893  CVLLEAMNLTPTPATKRAVKVDDSKLLSDKRILVVDDNMVNRRVATSMLKKYGAIVSSVN 952

Query: 891  NGVEAVHAVQC----QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAM 946
             G EAV AV+     +  DLI+MD+ MP MDG +ATR IR      NW+      I +  
Sbjct: 953  GGAEAVDAVKNRKEDEKLDLIVMDIQMPEMDGWEATRRIR------NWE-VENCFICRTK 1005

Query: 947  PSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSK 986
              S   +H  R+PI+A+TA+ L  +  EC  +GMD +++K
Sbjct: 1006 NISWCRHH--RLPIVAVTADVLKGTHTECINSGMDDYLTK 1043


>gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1346

 Score =  169 bits (428), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 118/329 (35%), Positives = 165/329 (50%), Gaps = 76/329 (23%)

Query: 340 MAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNT 398
           +AKL     +++++E +L   +   E   +AK + LA MSHEIR+P+ GV+ M ++L +T
Sbjct: 599 LAKLLVNAQLRQSREQDLKDAMEQAEIATQAKSEFLANMSHEIRTPMNGVIGMTDLLLDT 658

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
           +L  EQR L   + SSG+ +L LINDILD SK+E+G ++LE+  F       H L    A
Sbjct: 659 ELRPEQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVNFN-----LHYLLEDLA 713

Query: 459 SLQKILMLEGDIA------DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           SL  +   E  +        DVP +V GD  R+RQILTNL+ NAIKFT +G+V +     
Sbjct: 714 SLMAVRADEKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTHQGEVVV----- 768

Query: 513 PEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDP 572
                    + QKS+A    +D                                      
Sbjct: 769 ---------MVQKSEARSQKSD-------------------------------------- 781

Query: 573 GTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLG 632
                  NS D+     V +   V DTGIG+PE+ +  LF K+ QV A   RK+GGTGLG
Sbjct: 782 -------NSADD-----VLLLFTVQDTGIGVPEDKIDLLFNKFSQVDASTTRKFGGTGLG 829

Query: 633 LAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           LAI +QL E+MGG + V S+   G  F F
Sbjct: 830 LAISRQLAEMMGGEVGVQSEYGRGCKFWF 858



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 96/174 (55%), Gaps = 29/174 (16%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            K K  +L+ EDN +N  VA  ++ ++G S D+V+ G++AV A+Q Q+YDL+LMDV MP M
Sbjct: 1033 KFKGHVLVAEDNPVNQKVAVGLLNKMGLSADIVDTGLKAVEALQNQSYDLVLMDVQMPEM 1092

Query: 917  DGLKATRLIRSFED------------------TGN--WDAAA--EAGIEQAMPSSGSSNH 954
            DGL+ATR IR+ ED                  TG+  W++     +  E   PS   S +
Sbjct: 1093 DGLEATRRIRAAEDRNQRSEVRNQISEERNQSTGDRRWESQPLNPSTPEYHNPSIPKSFN 1152

Query: 955  FK-------RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             K       +IPIIAMTA A+ +  E C   GMD +V+KPV   +L   L ++ 
Sbjct: 1153 PKIPQSLNPKIPIIAMTAGAMHQDRERCLDAGMDDYVTKPVNPGQLATVLSRWL 1206



 Score = 41.6 bits (96), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 29/141 (20%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV-----QCQNYDLILMDVCMPVM 916
            IL+V+DN+ N+ + K  ++  G  ++  + G EA+  +     +   + + ++D+ MP M
Sbjct: 884  ILIVDDNETNLEILKKQLEAWGVEVEQASEGHEALLILDRVYSEGNYFAMAILDMHMPGM 943

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG +  RLIR                        +++  K +P++ +T+      A+   
Sbjct: 944  DGAELGRLIR------------------------NTDILKDLPLVMLTSLGRPGDAKIFE 979

Query: 977  ANGMDSFVSKPVTFQKLKECL 997
              G +++++KPV   +L + L
Sbjct: 980  EQGFNAYLNKPVRQSELFDTL 1000


>gi|326794409|ref|YP_004312229.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
 gi|326545173|gb|ADZ90393.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
          Length = 939

 Score =  169 bits (428), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 163/648 (25%), Positives = 277/648 (42%), Gaps = 134/648 (20%)

Query: 364  TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            TE      Q LA +SHEIR+PL  ++   +IL   +LD++QR  +  +  S   +L +I+
Sbjct: 286  TESNRLKSQFLANISHEIRTPLNAIMGYIQILQKDQLDKQQRLYMDTIAQSTTNLLTIIS 345

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVL 483
            DILD SK+E+G + L+      R                      DI D+V         
Sbjct: 346  DILDFSKIEAGKLSLDLTDINIR----------------------DIVDEV--------- 374

Query: 484  RIRQILT--NLI--SNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEE 539
               QIL+  NL+  S  +   PE  + +  +V+ +P   ++ L           +A+K  
Sbjct: 375  --YQILSSANLVNASKELDLIPEFDLDVPTWVIGDPVRIRQVLTNL------IGNAIK-- 424

Query: 540  KHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDT 599
                                        H+    T V     + E   +++ +   + DT
Sbjct: 425  --------------------------FTHEGSVRTTVK----ILEKSNSSLKLSFQIIDT 454

Query: 600  GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTF 659
            G+GIPEN L  LF+ + QV     RK+GGTGLGL I K+LV+ MGG + V+S+   GS F
Sbjct: 455  GVGIPENKLDNLFKPFSQVDTSTTRKFGGTGLGLVITKKLVKQMGGNVEVSSEHGIGSNF 514

Query: 660  TFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKK 719
             F +  + S  E+  ++P   S +  + S+        ++   +T  +   +N T  S  
Sbjct: 515  RFTIVLKPSQKEQKVEEPISKSLLVFEPSLN-------YRNYLKTYLNHVGANCTFTSS- 566

Query: 720  LLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACS-VAEVAETLSEPESSFSHS 778
             L  ++   +       S+TS      N    T  LE+    VA + +    P    +  
Sbjct: 567  -LEQTVTLLN-------SQTSLDAVLLNIDSHTEKLEEIQELVAYITQQFRLPCILLTKR 618

Query: 779  PEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPD 838
            P      ++S+    H   +     P     SH+  N+ +       EP+ + E +   D
Sbjct: 619  PH-----DISKSSILHTLCSEILMTP----ISHNRLNKSL---RSLEEPKLLSEDRLYAD 666

Query: 839  -----RISQSPSSSSAEVP-ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNG 892
                  ++      + E P ET P    +IL V+D +IN+ +    ++  G  +D+  +G
Sbjct: 667  ETTTTELTTELELEAVEPPEETSPLSGIQILAVDDTQINLQLLGHWLEPHGLQVDLAYSG 726

Query: 893  VEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
             +A+   +   YDLILMD+ MP MDG++AT+ +R   +                      
Sbjct: 727  KQAIEMAKETQYDLILMDIQMPEMDGMEATQRLRKLTN---------------------- 764

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
              +   PI+A+TA+AL    ++  ++GM+++++KPV    L E + Q+
Sbjct: 765  --YVHTPIVALTAHALGSEQKQIVSSGMNAYLTKPVNEDILLETITQW 810


>gi|436841215|ref|YP_007325593.1| Histidine kinase [Desulfovibrio hydrothermalis AM13 = DSM 14728]
 gi|432170121|emb|CCO23492.1| Histidine kinase [Desulfovibrio hydrothermalis AM13 = DSM 14728]
          Length = 781

 Score =  169 bits (427), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 151/304 (49%), Gaps = 68/304 (22%)

Query: 367 TMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
           T+   Q LA MSHEIR+P+  ++ MAEIL+N++LD EQ++ +G++  SG+ +L LIN+IL
Sbjct: 264 TVAKSQFLAAMSHEIRTPMNAILGMAEILANSELDSEQKRFVGILQESGEALLHLINEIL 323

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           DLSK+ESG +  E        ++    + TA A   K L L  +I  DVP+ ++GD  R+
Sbjct: 324 DLSKIESGEISFENTDLDLDRIIGKAFKVTAHAGHGKGLELAYNINRDVPVLMMGDPSRL 383

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
           +QI  NLI NAIKFT  G      +VV E                               
Sbjct: 384 QQIFVNLIGNAIKFTERG------FVVVETSL---------------------------- 409

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
                                KHD + G     GN M+        I   + D+GIGI E
Sbjct: 410 ---------------------KHDTEFGL----GNRMN--------IHFAIRDSGIGIEE 436

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
           + +  +F ++ Q  +   RKYGGTGLGL+ICK L E MGG++ + SK   G+T    +P+
Sbjct: 437 DKVDAIFDRFTQADSSTTRKYGGTGLGLSICKSLCEAMGGKIWIESKKGFGTTVNLQIPF 496

Query: 666 QVSP 669
              P
Sbjct: 497 TKDP 500



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 83/147 (56%), Gaps = 23/147 (15%)

Query: 848 SAEVPE-TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDL 906
           S  VP  TK +P   ILLVEDNK N M+ +   + L H++ + NNG E  + VQ +++D+
Sbjct: 644 SKAVPNNTKIRP-LNILLVEDNKANCMLIELFFRDLPHTLHIANNGEEGFNRVQNEHFDM 702

Query: 907 ILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966
           I MD+ MP+MDG + TR IR++E+  +                          I+A+TA+
Sbjct: 703 IFMDIEMPIMDGYECTRTIRTWENNTDITPCI---------------------IVALTAH 741

Query: 967 ALSESAEECFANGMDSFVSKPVTFQKL 993
           AL+E+ E+    G DSF++KP++  K+
Sbjct: 742 ALTEAKEKITDAGCDSFLTKPISKDKI 768


>gi|127514716|ref|YP_001095913.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126640011|gb|ABO25654.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1042

 Score =  169 bits (427), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 138/420 (32%), Positives = 189/420 (45%), Gaps = 77/420 (18%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            V + C+V DTGIGI +  L  LF  ++QV +   R +GGTGLGL+I K+L ELM G + V
Sbjct: 558  VLLSCEVEDTGIGIAKEKLAMLFNPFIQVDSSTTRMFGGTGLGLSIAKRLCELMQGEIKV 617

Query: 650  TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLF 709
             S+   GS F+F L  Q++    +SD   D       + VT     G F+   R LG L 
Sbjct: 618  RSQQEVGSIFSFTLTQQLA----DSDKMIDWRAGLSPERVTLMGQLGAFE---RMLGELL 670

Query: 710  SSNGTSRSKKLLPNSIGFASAHKVNGFSETS---YSFPSNNRQKETAPLEDACSVAEVAE 766
            +S G   S              + +   ET    YSF         AP  +A     V E
Sbjct: 671  TSWGARVSY-----------LEEEDAILETDVIIYSF---------APRREAF----VEE 706

Query: 767  TLSEPESSFSHSPEPENETE--VSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKT 824
              +  E    H+  P       +S  +Q   E     Q+            R++I+    
Sbjct: 707  LNAWRELVGQHADRPNTRVLPLLSYWQQTEFEK----QDARVPHLGRPLNIRQLIRALSD 762

Query: 825  NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
               +++ E   +P             + E     KPK+LLVEDNK+N MVA  M+ QLG 
Sbjct: 763  RADEEMIEPVIEP-------------IVEPSMPDKPKVLLVEDNKVNQMVALGMLHQLGV 809

Query: 885  SIDVVNNGVEAV---HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAG 941
              DV +NG EA+    A+Q   Y LILMD  MP MDG +AT  IR  E  G         
Sbjct: 810  QADVASNGREALALLSALQGNPYQLILMDCLMPEMDGFQATAAIR--EGQGG-------- 859

Query: 942  IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                       + F  +PIIA+TANA+    E C   GMD +++KP+    LKECL ++F
Sbjct: 860  -----------SQFCALPIIALTANAMKGDREHCIRAGMDDYLTKPLVLSVLKECLYRWF 908



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 153/301 (50%), Gaps = 15/301 (4%)

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSL---HEEDILGKTDVEIFSGAGV 273
           L+++  ++  +    P+ + + D + RYRFI  H+       EED+L +T VE    A V
Sbjct: 255 LQKSRRYIDNITNVIPIQLAYVDAQSRYRFINQHYLQWLGKTEEDVLDQT-VEAVQPADV 313

Query: 274 KESQDFKREVLEKGLPAKREITFETELFGS----KTFLIYVEPVFSKSGETIGVNYMGMD 329
            +      +  ++G+ A  +  FE E   +    + F I   P     G+  G      D
Sbjct: 314 YQ----LIKPYQQGVLAGNKQVFEAETIDADQAPRFFHITYVPDVGDDGQVEGYFICVED 369

Query: 330 VTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVV 389
           +T       K+    +E+       +E  +   +  +T   +  LA MSHEIR+P+ GV+
Sbjct: 370 LTRMKLNERKIETYAQEMEFSNWALSEAREKAEVAAKT--KEDFLACMSHEIRTPMNGVI 427

Query: 390 SMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449
            +  +L  T+L   Q++ + V  +S D +L L+NDILD SK+ESG  ++EA +F   E++
Sbjct: 428 GILGLLGETQLSPMQKRYVDVASASADSLLSLLNDILDFSKIESGKFEIEAIEFDLVELL 487

Query: 450 KHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
              +Q+ +  L ++ L L  DI       V+GD  R+RQIL NL+ NAIKFT EG + ++
Sbjct: 488 DLFVQSVSLKLEERHLPLFVDITQLQYRYVVGDPSRLRQILVNLVGNAIKFTEEGWIALR 547

Query: 509 L 509
           L
Sbjct: 548 L 548


>gi|374299235|ref|YP_005050874.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552171|gb|EGJ49215.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 946

 Score =  169 bits (427), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 187/387 (48%), Gaps = 83/387 (21%)

Query: 293 EITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKA 352
           E ++ET + G+K F     P  S+ G        G+D          +  +  EI   + 
Sbjct: 503 EWSWETSV-GTKHFQTMFAPEASRDG--------GVD---------SVLTISREITSLRR 544

Query: 353 KETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVM 411
            E +L +     EE  RAK Q LA MSHEIR+P+ G++ M E+      D   R+ LG  
Sbjct: 545 LEEDLRRARDAAEEANRAKSQFLANMSHEIRTPMNGIMGMVELALMGCKDARSREYLGYA 604

Query: 412 ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDI 470
            +S   +L ++NDILDLSK+E+G M+LE + FRPRE+++ +     +   QK L  +  +
Sbjct: 605 KNSAVNLLDIVNDILDLSKIEAGRMELEKSVFRPREMLESLFAIQGSQAEQKGLRFKTHV 664

Query: 471 ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQ 530
             +VP  ++GD  R+RQILTNL+ NA+K+T EG+V +  +V  E       LKQ      
Sbjct: 665 DPNVPKRLVGDEGRLRQILTNLVGNAVKYTREGEVAV--FVTAEV------LKQ------ 710

Query: 531 SATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATV 590
                                    D++ GE    H+  D                   V
Sbjct: 711 -------------------------DQEQGE----HRRAD------------------LV 723

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
            +   + DTGIGI  + LP +F  + + + D   ++GGTGLGL I KQLVELM GR+ V 
Sbjct: 724 SLVFSIRDTGIGIAPDKLPRIFEPFTRGAQDA--EFGGTGLGLTITKQLVELMNGRIDVR 781

Query: 651 SKVHCGSTFTFILPYQVSPIEENSDDP 677
           S +  GSTFT  L  Q +P E    +P
Sbjct: 782 STLGQGSTFTVSLLLQTAPKEAIPAEP 808



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 79/142 (55%), Gaps = 24/142 (16%)

Query: 857 KPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
           + KP +ILL EDN+IN  +A  ++K  GH I   +NG +A+ A+  + +DL+LMD  MPV
Sbjct: 817 RAKPLRILLAEDNEINRFMALELLKLRGHEIVTADNGKQALEALAKEAFDLVLMDAQMPV 876

Query: 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
           MDG +ATR IR          A EAG               RI I+A+TA AL    E  
Sbjct: 877 MDGEEATRRIR----------AGEAG-------------NPRIHIVALTAYALRGDRERF 913

Query: 976 FANGMDSFVSKPVTFQKLKECL 997
            A GMD ++SKP+  ++L+  L
Sbjct: 914 LAVGMDDYLSKPIDLEELERVL 935


>gi|449450139|ref|XP_004142821.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
 gi|449523071|ref|XP_004168548.1| PREDICTED: histidine kinase 4-like [Cucumis sativus]
          Length = 985

 Score =  169 bits (427), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/295 (35%), Positives = 163/295 (55%), Gaps = 13/295 (4%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T L   Q+       + G  ++ LIN++LD +K+
Sbjct: 380 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKI 439

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S QK L L   ++D VP  VIGD  R RQI+T
Sbjct: 440 EAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIIT 499

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAV----KEEKHQPKSQ 546
           NL+ N++KFT  G + +K+++      +K  +  K     S +D      ++ +     +
Sbjct: 500 NLVGNSVKFTERGHIFVKVHLAEH---SKGSIDSKYVNGISDSDLFISGGRDFQTLSGCE 556

Query: 547 TASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606
            A DQNG+ + KH    +D + +  P + V             V +   V DTGIGI  +
Sbjct: 557 AADDQNGWDNFKHIIADEDFQLNATPNSMVVANEGCGH-----VTLMVSVEDTGIGILLH 611

Query: 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           A   +F  +MQ  +  +R YGGTG+GL+I K LVELMGG++   S+   GSTF+F
Sbjct: 612 AQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSF 666



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 13/142 (9%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN++N  VA   +K+ G  ++  ++G  A+  +Q   N+D   MD+ MP MDG 
Sbjct: 853  RILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGF 912

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATRLIR  E+  N +  + AG  +             +PI+AMTA+ +  + +EC   G
Sbjct: 913  EATRLIRMMENKEN-EGESYAGEGKW-----------HMPILAMTADVIHATYDECLKCG 960

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + ++F
Sbjct: 961  MDGYVSKPFEEENLYKEVAKFF 982


>gi|413923913|gb|AFW63845.1| putative histidine kinase family protein [Zea mays]
          Length = 975

 Score =  169 bits (427), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/371 (32%), Positives = 183/371 (49%), Gaps = 53/371 (14%)

Query: 305 TFLIYVEPVFSKSGETIGVNYMGMD-VTDQVRKREKMAKLREEIAVQKAKETELNKTIHI 363
           TF+I++       G +I   Y   D VT+  RK E++    E   V K+           
Sbjct: 319 TFVIWM-----LLGYSIAAAYSRYDKVTEDCRKMEELKTQAEAADVAKS----------- 362

Query: 364 TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
                   Q LAT+SHEIR+P+ GV+ M ++L  T L   Q+         G  ++ LIN
Sbjct: 363 --------QFLATVSHEIRTPMNGVLGMLDMLLGTDLTMTQKDYAQTAQMCGRALITLIN 414

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDV 482
           D+LD +K+E+G ++LEA  F  R ++  V+   ++ S +K + L   + D+VP +V+GD 
Sbjct: 415 DVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDNVPKDVLGDP 474

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ 542
            R RQILTNL+ NA+KFT  G V +++ +               +A Q    A+  +  +
Sbjct: 475 WRFRQILTNLVGNAVKFTERGHVFVRVCLAD---------NSNMEAGQVLNGAMNGKDGR 525

Query: 543 PKSQTASDQN---GFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEAT---------V 590
             S T    N   GF        +Q  K        +S   S+ +DLE T         V
Sbjct: 526 VDSTTNGAFNTLSGFEAADRRNSWQYFK------MLLSDKESLLDDLEGTNSDQSDSDHV 579

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
            +   + DTG+GIP  A   +F  +MQ  +  +R YGGTG+GL+I K L ELMGG+++  
Sbjct: 580 TLAISIEDTGVGIPLQAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISFV 639

Query: 651 SKVHCGSTFTF 661
           S+   GSTFTF
Sbjct: 640 SRPFVGSTFTF 650



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 82/141 (58%), Gaps = 10/141 (7%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ---CQNYDLILMDVCMPVMDG 918
           IL+V+DNK+N+ VA + +K+ G ++  V +G +A+  +Q   C  +D   MDV MP MDG
Sbjct: 832 ILVVDDNKVNLRVAAAALKKYGANVSCVESGKDAISLLQPPHC--FDACFMDVQMPEMDG 889

Query: 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            +ATR IR  E   N     E    + +   GS+     +P++AMTA+ +  + E+C  +
Sbjct: 890 FEATRQIRQTEMRVN-----EERKNKLVLIEGSTFVEYHLPVLAMTADVIQATYEKCIKS 944

Query: 979 GMDSFVSKPVTFQKLKECLEQ 999
           GMD +VSKP   ++L + + +
Sbjct: 945 GMDGYVSKPFDEEQLYQAVSR 965


>gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1149

 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/357 (33%), Positives = 168/357 (47%), Gaps = 92/357 (25%)

Query: 312 PVFSKSGETIGVNYMGMDVTDQVRKREKM-AKLREEIAVQKAKETELNKTIHITEETMRA 370
           P+ S  GE+ G  +   +VT+Q R  E++ A +RE                   EE  RA
Sbjct: 588 PISSPLGESYGRVWFFHEVTEQKRSEERLRATMRE------------------AEEANRA 629

Query: 371 KQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLS 429
           K   LA MSHEIR+P+ G++ M  +LS T L+ EQ   +  + +S + +L +INDILD S
Sbjct: 630 KSYFLANMSHEIRTPMNGIIGMTGLLSETTLENEQHDYVDTIRASSEALLVVINDILDFS 689

Query: 430 KVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQI 488
           K+ESG +++E   F  R+ ++  + T A  + +K L +      +VP  ++GD  R+RQ+
Sbjct: 690 KIESGKLEIENIMFDLRDCMEEAIDTLAIQATEKGLDVSYVFGKEVPGSLLGDPTRLRQV 749

Query: 489 LTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTA 548
           + NLI NA+KFT +G V     VV   PF                               
Sbjct: 750 IVNLIGNAVKFTAKGGV-----VVRVDPF------------------------------- 773

Query: 549 SDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608
                            H  DDD                  V +   V DTGIGIP + +
Sbjct: 774 -----------------HIKDDD------------------VILHFKVTDTGIGIPADRI 798

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
             LF  + QV A   RKYGGTGLGLAI K LVELMGG + V S+   GSTF F + +
Sbjct: 799 DRLFGSFSQVDASTTRKYGGTGLGLAISKNLVELMGGSMWVESEDGEGSTFHFTVSF 855



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 80/144 (55%), Gaps = 25/144 (17%)

Query: 859  KP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            KP +ILL EDN IN  VAK + K++G+ I V  NG+EAV  +    ++L+ MD+ MP MD
Sbjct: 1013 KPLRILLAEDNVINQKVAKRLFKKMGYEISVAQNGLEAVAMIGENEFELVFMDIQMPEMD 1072

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            GL+ATR     E    W            PS       +R  IIA+TANA+ E  E CFA
Sbjct: 1073 GLEATR-----EIIKRW------------PS-------ERPRIIALTANAMREDRENCFA 1108

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             GMD +++KP     LK+ + + +
Sbjct: 1109 AGMDGYLTKPFKLDDLKDVIAKTY 1132


>gi|182412731|ref|YP_001817797.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839945|gb|ACB74197.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 876

 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/356 (35%), Positives = 176/356 (49%), Gaps = 69/356 (19%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           + PV +++GE    +++G+   D    R+  A LRE      AKE          E   R
Sbjct: 315 ITPVKNRAGEI--RSFVGV-FEDMTEIRQTEALLRE------AKER--------AEAGDR 357

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK Q LATMSHE+R+PL G+V  A +L  T+L  EQ + +  + +S + ++QL  DILD 
Sbjct: 358 AKGQFLATMSHEVRTPLNGIVGFASLLLETELTPEQLEYVETIRTSSETLIQLTGDILDY 417

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQ 487
           +++ESG +KLE     PRE V++ L  AA     K + L   I D VP  ++ DV R+RQ
Sbjct: 418 ARIESGRLKLEPQPCDPRECVENALDLAATLALPKGVELLHWIDDTVPAAIVADVGRLRQ 477

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQT 547
           ++ NL++NA+KFTP G+V + + VV                              P  +T
Sbjct: 478 VIVNLVNNAVKFTPTGEVAVDVRVV---------------------------ASSPAPET 510

Query: 548 ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
           A            E     +   D G             EA+  +   V DTGIGI    
Sbjct: 511 AD----------AEALPSARETADAG-------------EASCTLEFSVRDTGIGIAPAH 547

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
            P +FR + QV     R+YGGTGLGLAICK LV LM G +T TS++  GS FTF +
Sbjct: 548 HPKIFRPFSQVDDSTTRRYGGTGLGLAICKNLVGLMNGHITFTSELGRGSRFTFTI 603



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 21/141 (14%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+VEDN +N  + ++++  LG +  +  NG  A+  +     +++LMD+ MP +DGL 
Sbjct: 750  RVLIVEDNAVNQRLIQTVVSHLGCTSHLAVNGRVALEEIARSRPEVVLMDLHMPELDGLA 809

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
             T  IR+        AA EA               + + I+A+TA+A +E  E   A G 
Sbjct: 810  TTAQIRA-------GAAGEA--------------VRGVWIVALTADARNEQRERTLAAGA 848

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            + +++KPV   +L+  LE+Y 
Sbjct: 849  NDYLTKPVRPAELQAALERYL 869


>gi|302821913|ref|XP_002992617.1| hypothetical protein SELMODRAFT_430773 [Selaginella moellendorffii]
 gi|300139581|gb|EFJ06319.1| hypothetical protein SELMODRAFT_430773 [Selaginella moellendorffii]
          Length = 1096

 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 208/438 (47%), Gaps = 61/438 (13%)

Query: 258 DILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKRE-------------ITFETELFGSK 304
           D+  K++  +  G  + +  + +   LE G P ++               T  T  FG  
Sbjct: 388 DVTNKSNPLVMYGPNIPDGNEIEVCQLEFGDPFRKHEMRCRFNKEASVVWTAITTTFGIV 447

Query: 305 TFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT 364
             ++ V  +F  +G  I        V +  RK E +    E   V K+            
Sbjct: 448 VIVLLVAQIFYAAGNRIA------KVEEDYRKMEDLKVRAESADVAKS------------ 489

Query: 365 EETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIND 424
                  Q LAT+SHEIR+P+ GV+ M ++L +T+LD  QR      + SG  +++LIN+
Sbjct: 490 -------QFLATVSHEIRTPMNGVLGMLQMLMDTELDSTQRDYAHTALESGKQLIKLINE 542

Query: 425 ILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVL 483
           +LD +K+ESG M+LE   F+ R ++  +L   +A +  K + L   +++ VP  V+GD +
Sbjct: 543 VLDQAKIESGRMELETVPFKLRTILDDILTPFSAENKDKGIELAAYVSERVPDVVLGDPV 602

Query: 484 RIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKA-YQSATDAVKEEKHQ 542
           R+ QI+TNL+ N+IKFT  G + + +++       +E +K    A  ++ +  V E +  
Sbjct: 603 RLHQIVTNLVGNSIKFTDRGHIFVSVHL-------EEDVKAAMSAQCEACSKQVTETQDH 655

Query: 543 PKSQTASDQNGFHDKKHGEGYQDHKHD---------DDPGTPVSHGNSMDEDLEATVWIR 593
                  D  G      G    D +++          +     +H   +D     TV + 
Sbjct: 656 SDKLNTVDAAGSCSTLSGLEAADRRNNWETFKLILKQEKSRLTTHKQPVD-----TVKLV 710

Query: 594 CDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKV 653
             V DTG+GIP +A   +F  +MQ  +  +R YGGTG+GL+I K LVELM G +   S +
Sbjct: 711 FSVEDTGVGIPVHAQERVFSPFMQADSSTSRNYGGTGIGLSISKCLVELMKGEIGFVSSL 770

Query: 654 HCGSTFTFILPYQVSPIE 671
             G+TF F + ++V  +E
Sbjct: 771 GVGTTFWFTVNFKVGDLE 788



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 23/141 (16%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N  VA   +++ G  ++ V +G  A+  ++    +D   MD+ MP MDG +
Sbjct: 978  ILVVDDNKVNRRVAAGALQKYGARVECVESGRLAIEKLEPPHKFDACFMDIQMPEMDGFE 1037

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR IR FE  G                 GS      +PI+AMTA+ +  + +EC   GM
Sbjct: 1038 ATRRIRCFEKRG-----------------GS-----HVPILAMTADVIQATYDECRRCGM 1075

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +VSKP   ++L   + ++F
Sbjct: 1076 DDYVSKPFEEKQLYRAVAKFF 1096


>gi|302768761|ref|XP_002967800.1| cytokinin receptor [Selaginella moellendorffii]
 gi|300164538|gb|EFJ31147.1| cytokinin receptor [Selaginella moellendorffii]
          Length = 965

 Score =  167 bits (423), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 194/386 (50%), Gaps = 50/386 (12%)

Query: 298 TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIA-VQKAKETE 356
           T  FG    ++ V  +F  +G  I        V +  RK E + K+R E A V K+    
Sbjct: 310 TTTFGIVVIVLLVAQIFYAAGNRIA------KVEEDYRKMEDL-KVRAESADVAKS---- 358

Query: 357 LNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGD 416
                          Q LAT+SHEIR+P+ GV+ M ++L +T+LD  QR      + SG 
Sbjct: 359 ---------------QFLATVSHEIRTPMNGVLGMLQMLMDTELDSTQRDYAHTALESGK 403

Query: 417 LVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVP 475
            +++LIN++LD +K+ESG M+LE   F+ R ++  +L   +A +  K + L   +++ VP
Sbjct: 404 QLIKLINEVLDQAKIESGRMELETVPFKLRTILDDILTLFSAENKDKGIELAAYVSERVP 463

Query: 476 IEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKA-YQSATD 534
             V+GD +R+ QI+TNL+ N+IKFT  G + + +++       +E +K    A  ++ + 
Sbjct: 464 DVVLGDPVRLHQIVTNLVGNSIKFTDRGHIFVSVHL-------EEDVKAAMSAQCEACSK 516

Query: 535 AVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHD---------DDPGTPVSHGNSMDED 585
            V E +         D  G      G    D +++          +     +H   +D  
Sbjct: 517 QVTETQDHSDKLNTVDAAGSCSTLSGLEAADRRNNWETFKLILKQEKSRLTTHKQPVD-- 574

Query: 586 LEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
              TV +   V DTG+GIP +A   +F  +MQ  +  +R YGGTG+GL+I K LVELM G
Sbjct: 575 ---TVKLVFSVEDTGVGIPVHAQERVFSPFMQADSSTSRNYGGTGIGLSISKCLVELMKG 631

Query: 646 RLTVTSKVHCGSTFTFILPYQVSPIE 671
            +   S +  G+TF F + ++V  +E
Sbjct: 632 EIGFVSSLGVGTTFWFTVNFKVGDLE 657



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 23/141 (16%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N  VA   +++ G  ++ V +G  A+  ++    +D   MD+ MP MDG +
Sbjct: 847  ILVVDDNKVNRRVAAGALQKYGARVECVESGRLAIEKLEPPHKFDACFMDIQMPEMDGFE 906

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR IR FE  G                         +PI+AMTA+ +  + +EC   GM
Sbjct: 907  ATRRIRCFEKRGG----------------------SHVPILAMTADVIQATYDECRRCGM 944

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +VSKP   ++L   + ++F
Sbjct: 945  DDYVSKPFEEKQLYRAVAKFF 965


>gi|317151836|ref|YP_004119884.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942087|gb|ADU61138.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 533

 Score =  167 bits (423), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 179/378 (47%), Gaps = 80/378 (21%)

Query: 304 KTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKRE--KMAKLREEIAVQK---------- 351
           +TF +   P+   SGE + +  +G+D+TD+ R  +  K+A  + E  V++          
Sbjct: 217 RTFHLQCSPMTDSSGERM-IMVLGIDITDRKRAEDALKLAHDKSEDKVRRRTRELERANE 275

Query: 352 ---AKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQL 407
              +K   L   +   +   RAK   LA MSHEIR+PL  V+ MAE+    + +  + + 
Sbjct: 276 ELTSKSARLVAAMKKADAATRAKSAFLANMSHEIRTPLNAVLGMAELALRVQDEARKNEC 335

Query: 408 LGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILML 466
           L  ++ +G  +L +INDILD SK+E+  + LE   F  R++++  L      +  K L L
Sbjct: 336 LERVLEAGTSLLTVINDILDFSKIEARKLTLERIDFDLRDILRTALDMHRLHATDKGLGL 395

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKS 526
             ++ DDVP  V+GD  R+RQ+L NL++NA+KFT  G V +++ + P+ P    GL    
Sbjct: 396 TAEVGDDVPEAVLGDPGRLRQVLVNLVANAVKFTDAGGVTVRIGLAPDQPADLSGLA--- 452

Query: 527 KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDL 586
                                                        PG P+          
Sbjct: 453 ---------------------------------------------PGQPLR--------- 458

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
                +R +V DTGIGIP+     +F+ ++Q      RK+GGTGLGLAICK LVELM G 
Sbjct: 459 -----LRFEVADTGIGIPKRKRRAIFKSFLQADDSITRKHGGTGLGLAICKLLVELMHGS 513

Query: 647 LTVTSKVHCGSTFTFILP 664
           L V S    GSTF   +P
Sbjct: 514 LDVESVEGEGSTFFGAVP 531


>gi|374999131|ref|YP_004974629.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
 gi|357426556|emb|CBS89485.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
          Length = 719

 Score =  167 bits (422), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/298 (37%), Positives = 151/298 (50%), Gaps = 66/298 (22%)

Query: 369 RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           RAK + LA MSHE+R+P+T V+ M ++L  T L  +Q+  +  + SS D ++ ++ND+LD
Sbjct: 193 RAKSRFLAMMSHELRTPMTAVIGMGDLLMGTGLSDQQKSFVRTLRSSADTLMTILNDVLD 252

Query: 428 LSKVESGVMKLEAAKFR-PR---EVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVL 483
            SK+E+G + LE   F  PR   +VV+  L  AAA   K L L   IADD P  + GD  
Sbjct: 253 FSKIEAGQLMLEEIDFSLPRLVDDVVQLFLVRAAA---KGLALSASIADDTPRHIRGDPT 309

Query: 484 RIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQP 543
           R+RQ+L NL+SNAIKFT  G + I ++  P+PP                           
Sbjct: 310 RLRQVLFNLVSNAIKFTERGAIEIAVW-SPDPPVTPSA---------------------- 346

Query: 544 KSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGI 603
                         + GEG            PV+              +R +V D+GIG+
Sbjct: 347 -------------GRAGEGGAT--------APVT--------------LRFEVQDSGIGM 371

Query: 604 PENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
                  LF  ++Q  A  +RKYGGTGLGLAICK+LVE MGG +TV S    GSTF F
Sbjct: 372 TAEQRGRLFDAFVQADASTSRKYGGTGLGLAICKRLVEAMGGEITVASAPGRGSTFRF 429



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 24/169 (14%)

Query: 829 KICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDV 888
           ++ E Q   D  ++    + AE P+  P    ++LL EDN IN M+  +MM ++GH ID 
Sbjct: 434 RMAEAQPVGDLGTRGLLPTQAEEPQQSPVAL-RLLLAEDNDINRMLIIAMMTRIGHRIDA 492

Query: 889 VNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948
           VN+G   + A++  +YD++++D+ MPV+DG    R IR  +                   
Sbjct: 493 VNDGRAVLDAIKATDYDVLILDMEMPVLDGRSTARAIRRMD------------------- 533

Query: 949 SGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
                   RIPI+ ++A+AL E  +   A G+D++++KP+ +++L   L
Sbjct: 534 ----GAVARIPIVGLSADALPEHRDGHMAAGLDAYLTKPIDWEQLNAVL 578


>gi|89242035|dbj|BAE80688.1| histidine kinase [Zea mays]
          Length = 995

 Score =  166 bits (420), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 184/354 (51%), Gaps = 33/354 (9%)

Query: 318 GETIGVNYMGMD-VTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLAT 376
           G  +G  +   D V +  RK E++ K  E   V K+                   Q LAT
Sbjct: 350 GYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKS-------------------QFLAT 390

Query: 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
           +SHEIR+P+ GV+ M ++L +T L   QR         G  ++ LIN++LD +K+E+G +
Sbjct: 391 VSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKL 450

Query: 437 KLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
            LE+  F  R ++  V+   ++ S +K + L   +++ VP  ++GD  R RQI+TNL+ N
Sbjct: 451 DLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGN 510

Query: 496 AIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ-PKSQTASDQNGF 554
           +IKFT  G + +++++      A E    K ++  +  +  K+EK     S + +  +GF
Sbjct: 511 SIKFTERGHIFVQVHLADHSNLATE---SKVESVANGMNGHKDEKTAVATSVSLNTLSGF 567

Query: 555 HDKKHGEGYQDHKHDDDPGTPVSH-GNSMD-EDLEATVWIRCDVYDTGIGIPENALPTLF 612
                   +++ K        +S+  N M  E +   V +   V DTGIGIP +A   +F
Sbjct: 568 EAADSRNSWENFK------LLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVF 621

Query: 613 RKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
             +MQ  +  +R YGGTG+GL+I K LVELMGG++   S+ H GSTFTF    Q
Sbjct: 622 TPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQ 675



 Score = 92.8 bits (229), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 84/141 (59%), Gaps = 4/141 (2%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N+ VA   +K+ G  ++ V +G +A+ ++Q    + L LMD+ MP MDG +
Sbjct: 852  ILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGFE 911

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ IR+ E   N  A A    +    +  +  H   +P++AMTA+ +  + EEC   GM
Sbjct: 912  ATKQIRAMEAKANEQAVACDDSDTDGATRAARWH---LPVLAMTADVIQATHEECTKYGM 968

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +V+KP   ++L + L+++ 
Sbjct: 969  DGYVTKPFEEKQLFQALQKFL 989


>gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM
            271]
 gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM
            271]
          Length = 1040

 Score =  166 bits (420), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 143/441 (32%), Positives = 202/441 (45%), Gaps = 85/441 (19%)

Query: 581  SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
            ++D D +  V +R  + DTGIGI +  + TLF K+ Q+ A   R+YGGTGLGL+I K LV
Sbjct: 657  TLDSDCDDQVVLRFCIRDTGIGIAKEKIDTLFEKFTQIDASATRQYGGTGLGLSIAKDLV 716

Query: 641  ELMGGRLTVTSKVHCGST--FTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFF 698
            ELM G + V S V+ GS   FT  L  Q     + + +  + S    +  + DD      
Sbjct: 717  ELMQGSIGVESTVNQGSLFWFTAKLNRQTHATLQ-AQESKNRSLFGQKALIVDD------ 769

Query: 699  QFQPRTLGSLFSSNGTSR---SKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPL 755
                         N T+R   SK+LL  S G       NG         ++         
Sbjct: 770  -------------NATNREILSKRLL--SWGMRPEESDNGQDALDMLIRASTST------ 808

Query: 756  EDACSVAEVAETLSEPESSFSHSPEPENETEVS-----------RGKQCHVET---TSWF 801
             DA ++A +   + E +         E+E  +S            G+    E    ++W 
Sbjct: 809  -DAFTIAVIDMQMPEMDGVMLGKAIREHEALMSLQMIMMTSLGNNGESSLAEKAGFSAWL 867

Query: 802  QNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPK 861
            Q P        +    +I  S T EP    E  E+P +  + P++      E K +    
Sbjct: 868  QKP----VQIKKLKNALIALSATQEP----EADEQPSQ--KKPNNLLNRFAECKAR---- 913

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILLVEDN +N  VA  M+K+ G  +D V NG EA+ A+    YD++LMD+ MPVMDGL+A
Sbjct: 914  ILLVEDNIVNQQVAMLMLKKFGLHVDGVANGKEALSALMSLPYDVVLMDIQMPVMDGLEA 973

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR+ E                    G+S     IPIIAMTA+A     E C A GM+
Sbjct: 974  TRRIRNGE-------------------CGTS----AIPIIAMTAHAKQSDRELCLATGMN 1010

Query: 982  SFVSKPVTFQKLKECLEQYFP 1002
             +VSKPV  Q L + LE++ P
Sbjct: 1011 DYVSKPVNQQALADTLEKWLP 1031



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 144/289 (49%), Gaps = 20/289 (6%)

Query: 227 VLQNAPVVMGHQDKE---LRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREV 283
           +L   P ++   DKE   L +    N+ P    +  +GK+  EIF  A     Q    EV
Sbjct: 378 MLNALPDMLFVLDKEGVCLDFHARNNNEPHPPAKQFIGKSLKEIFPEAHSSALQHLIHEV 437

Query: 284 LEKGLPAKREITFETELFGSKT-FLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAK 342
            E G P   E  ++ +  G  + + I V P+ +     I  N     +TDQ     K+ +
Sbjct: 438 SESGAPKIHE--YQMKRSGKTSHYEIRVVPLGTDKTLNIVRN-----MTDQKETENKLLR 490

Query: 343 LREEI--AVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTK 399
              ++  A +KAK     K     +E  +AK + LA +SHEIR+P+ GV+ M  +L  T 
Sbjct: 491 TNRKLENASRKAK-----KLAEQAQEASKAKSEFLANISHEIRTPMNGVIGMTGLLLETD 545

Query: 400 LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAA 458
           L  +Q +  G + SS   +L LINDILD+SK+E+G + LE   F  +E++     + A  
Sbjct: 546 LTPQQHRYAGTIASSAQSLLDLINDILDVSKIEAGKLTLEILDFDLQELMDDFAASFAIQ 605

Query: 459 SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           + QK L     I   +P  + GD  R+RQIL N+  NA+KFT +G++ I
Sbjct: 606 AEQKNLEFLCSIEPGIPTRLTGDPGRLRQILMNIAGNAVKFTSKGEIAI 654


>gi|357126560|ref|XP_003564955.1| PREDICTED: histidine kinase 3-like [Brachypodium distachyon]
          Length = 1019

 Score =  166 bits (420), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/295 (37%), Positives = 158/295 (53%), Gaps = 31/295 (10%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T LD  Q+  +    +SG  ++ LIN++LD +K+
Sbjct: 437 QFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDFVRTAQASGKALVSLINEVLDQAKI 496

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R V   +L       Q K L L   ++D VP  +IGD  R+RQI+T
Sbjct: 497 ESGKLELEAVPFDLRIVCDDILSLFCGKAQEKGLELAVYVSDQVPQTLIGDPGRMRQIIT 556

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+SN+IKFT  G + + ++VV E     E               VK   H   + T S 
Sbjct: 557 NLMSNSIKFTERGHIYLTVHVVEEVMGCLE---------------VKTGTHY--TNTLSG 599

Query: 551 QNGFHDKKHGEGYQ----DHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606
               + ++  E ++    D    + P TPV+           T+ +   V DTG GIP  
Sbjct: 600 YPVANRRRSWESFRLFDMDLHSSEMPFTPVT---------PDTIRLIISVEDTGAGIPFE 650

Query: 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           A   +F  YMQV    AR +GGTG+GL+I K LV LM G +   SK H GSTF+F
Sbjct: 651 AQYRIFTPYMQVGPSIARIHGGTGIGLSISKCLVHLMKGEIGFVSKPHVGSTFSF 705



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 79/144 (54%), Gaps = 6/144 (4%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-YDLILMDVCMPVMD 917
            K +I++V+DN +N+ VA   +K+ G  +   ++G +A+  +   + +D   MD+ MP MD
Sbjct: 874  KKQIIVVDDNAVNLKVAAGALKKYGAVVTCADSGKKAIAYLSPPHIFDACFMDIQMPEMD 933

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +AT+ IR  E   N     E+G    +P    +    R PI+AMTA+ +  + EEC  
Sbjct: 934  GFQATKEIRKMESKLN--EKIESG---DVPPECVNVRRWRTPILAMTADVIQATYEECLK 988

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
              MD +VSKP   ++L   + ++F
Sbjct: 989  CEMDGYVSKPFEGEQLYREVTRFF 1012


>gi|224101927|ref|XP_002312478.1| histidine kinase cytokinin receptor [Populus trichocarpa]
 gi|222852298|gb|EEE89845.1| histidine kinase cytokinin receptor [Populus trichocarpa]
          Length = 1007

 Score =  166 bits (419), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 109/296 (36%), Positives = 162/296 (54%), Gaps = 14/296 (4%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M  +L +T L   QR         G  ++ LIN++LD +K+
Sbjct: 385 QFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDYAQTAQVCGKALIALINEVLDRAKI 444

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K + L   ++D VP  V+GD  R RQI+T
Sbjct: 445 EAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVPEIVVGDPGRFRQIIT 504

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAV-----KEEKHQPKS 545
           NL+ N++KFT  G + +K+++  E   A    K  +     + ++V     ++ K     
Sbjct: 505 NLVGNSVKFTERGHIFVKVHLY-ENAKAITDTKVDTCLNGGSNESVLTSGSQKFKTLSGC 563

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
           + A DQN +   KH   + D     D    V   N   ED+   V   C V DTGIGIP 
Sbjct: 564 EAADDQNSWDVFKH---FSDEDFRFDASINVMTNNEASEDVGLMV---C-VEDTGIGIPL 616

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
            A   +F  ++Q  +  +R+YGGTG+GL+I K LVELMGG++   S+   GSTF+F
Sbjct: 617 KAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQINFISRPEVGSTFSF 672



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 82/143 (57%), Gaps = 7/143 (4%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN++N  VA   +K+ G   +   +G EA+  +Q    YD   MD+ MP MDG 
Sbjct: 862  RILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKLLQPPHTYDACFMDIQMPEMDGF 921

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK-RIPIIAMTANALSESAEECFAN 978
            +ATR IR  E   N     E+ +E+     G++   +  IPI+AMTA+ +  + +EC  +
Sbjct: 922  EATRRIRQMESQANEQMNGESMVEE-----GTARKVQWHIPILAMTADVIHATHDECLKS 976

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GMD +VSKP   + L + + ++F
Sbjct: 977  GMDGYVSKPFEEENLYQAVARFF 999


>gi|190148363|gb|ACE63264.1| cytokinin receptor 1A [Populus trichocarpa]
          Length = 1006

 Score =  166 bits (419), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 109/296 (36%), Positives = 162/296 (54%), Gaps = 14/296 (4%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M  +L +T L   QR         G  ++ LIN++LD +K+
Sbjct: 385 QFLATVSHEIRTPMNGVLGMLALLLDTDLSSTQRDYAQTAQVCGKALIALINEVLDRAKI 444

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K + L   ++D VP  V+GD  R RQI+T
Sbjct: 445 EAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGIELAVFVSDKVPEIVVGDPGRFRQIIT 504

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAV-----KEEKHQPKS 545
           NL+ N++KFT  G + +K+++  E   A    K  +     + ++V     ++ K     
Sbjct: 505 NLVGNSVKFTERGHIFVKVHLY-ENAKAITDTKVDTCLNGGSNESVLTSGSQKFKTLSGC 563

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
           + A DQN +   KH   + D     D    V   N   ED+   V   C V DTGIGIP 
Sbjct: 564 EAADDQNSWDVFKH---FSDEDFRFDASINVMTNNEASEDVGLMV---C-VEDTGIGIPL 616

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
            A   +F  ++Q  +  +R+YGGTG+GL+I K LVELMGG++   S+   GSTF+F
Sbjct: 617 KAQGRVFMPFVQADSSTSRQYGGTGIGLSISKCLVELMGGQINFISRPEVGSTFSF 672



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 82/143 (57%), Gaps = 7/143 (4%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN++N  VA   +K+ G   +   +G EA+  +Q    YD   MD+ MP MDG 
Sbjct: 861  RILVVDDNRVNRRVAAGALKKFGADAECAESGKEALKLLQPPHTYDACFMDIQMPEMDGF 920

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK-RIPIIAMTANALSESAEECFAN 978
            +ATR IR  E   N     E+ +E+     G++   +  IPI+AMTA+ +  + +EC  +
Sbjct: 921  EATRRIRQMESQANEQMNGESMVEE-----GTARKVQWHIPILAMTADVIHATHDECLKS 975

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GMD +VSKP   + L + + ++F
Sbjct: 976  GMDGYVSKPFEEENLYQAVARFF 998


>gi|334119823|ref|ZP_08493907.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
 gi|333457464|gb|EGK86087.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
          Length = 1702

 Score =  166 bits (419), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 162/330 (49%), Gaps = 54/330 (16%)

Query: 340  MAKLREEIAVQKAKETELNKTIHITEETMRAKQM----LATMSHEIRSPLTGVVSMAEIL 395
            + +L  ++A+   + T   +     E  + A +M    LA MSHEIR+P+ GV+ M ++L
Sbjct: 989  LGRLSVQLAIAIQQSTLFEQAQQAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLL 1048

Query: 396  SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT 455
              T L  EQ   +  +  SG  +L +INDILDLSK+E+G M+LE  +F     +  VL  
Sbjct: 1049 LKTNLTPEQIDFVQTLKLSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDL 1108

Query: 456  AAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
             A   Q K + +   I  DVP+++ GD  R+RQILTNLI+NAIKFT  G+V I++     
Sbjct: 1109 LATPAQEKGIEVVALIDTDVPLQIKGDAARLRQILTNLINNAIKFTEAGEVVIEVADASN 1168

Query: 515  PPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGT 574
            P        QK             EK +P                               
Sbjct: 1169 PGLLAASDNQKIL-----------EKIEP------------------------------L 1187

Query: 575  PVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLA 634
             + + +SM         +   V DTGIGI       LF+ + QV A   RKYGGTGLGLA
Sbjct: 1188 KIENNDSM--------LLLFKVTDTGIGIATEDQKKLFQSFTQVDASTTRKYGGTGLGLA 1239

Query: 635  ICKQLVELMGGRLTVTSKVHCGSTFTFILP 664
            I K+LVELMGG++ V S    GSTF F +P
Sbjct: 1240 ISKELVELMGGQIGVESTPGQGSTFWFTVP 1269



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 92/163 (56%), Gaps = 14/163 (8%)

Query: 838  DRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
            D    +P+S+ A   + +     KILLVED  IN  V  + ++ LG + DV NNG EA+ 
Sbjct: 1422 DESQANPTSNRASAIDNRDLASLKILLVEDTPINQKVGLNQLRVLGCAADVANNGAEALS 1481

Query: 898  AVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR 957
             V  + YD++LMD  MPV+DG +AT  +R              G+E A  ++G     ++
Sbjct: 1482 MVALKKYDIVLMDCQMPVLDGYEATLQLR--------------GLEAADLAAGKMESHQK 1527

Query: 958  IPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
              +IAMTANAL    E+C A GMD ++SKP++ +KLK  LE +
Sbjct: 1528 TVVIAMTANALKGDREKCLAAGMDDYISKPISIEKLKSVLENW 1570


>gi|308807791|ref|XP_003081206.1| PAS (ISS) [Ostreococcus tauri]
 gi|116059668|emb|CAL55375.1| PAS (ISS) [Ostreococcus tauri]
          Length = 933

 Score =  166 bits (419), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 114/339 (33%), Positives = 182/339 (53%), Gaps = 35/339 (10%)

Query: 351 KAKETELN--KTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQL 407
           K ++ ELN  K +   E    AK + LA MSHEIR+PL G++++ ++L +T LDR QR+ 
Sbjct: 218 KRRDDELNALKKVARAEAATEAKSRFLAHMSHEIRTPLNGLIAVGQLLEDTNLDRLQREY 277

Query: 408 LGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILML 466
           +  +++SG+ +  LI+DILD S+VE+  + L+   F P  V+ +V++ TA  S +K L +
Sbjct: 278 VSTVLTSGETLQALISDILDFSRVEADKLVLQCEPFHPEVVISNVIEITAMQSAKKRLNI 337

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV-------VPEPPFAK 519
              +   VP  V+GD +R++Q++ N +SNAIKFT +G + I+LY+       V    F +
Sbjct: 338 GYHVDPGVPKLVMGDPMRLQQVILNCVSNAIKFTEKGNIMIRLYLGREDTTEVARMAFGR 397

Query: 520 EGLKQKS----KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKH--GEGYQDHKHDDDPG 573
           E  +  +    ++Y + + A  +     K   A  Q   H   H  G+  Q    D++  
Sbjct: 398 EDEEDHTAHMVRSYSAGSLAATQ-----KDWLAPLQCFLHMCPHFAGKAKQQKAKDEEKK 452

Query: 574 TPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGL 633
            P S             ++   V DTG+G+ E  +  +F+ + QV     RKY GTGLGL
Sbjct: 453 DPDSW------------FLHFYVKDTGMGLQEGTIRNIFQSFQQVDMGSTRKYDGTGLGL 500

Query: 634 AICKQLVELMGGRLTVTSK-VHCGSTFTFILPYQVSPIE 671
           AI ++L + MGG +   SK +  GSTF F +  +  P E
Sbjct: 501 AISRKLCDAMGGTMWAESKGLGQGSTFHFCIKCKSVPEE 539



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 87/147 (59%), Gaps = 32/147 (21%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVN--NGVEAVHAVQCQN-----YDLILMDVCM 913
            +IL+ ED+ +N+ VA++++ +LG+ +DV +  +G EA+  V+ +      +D++LMD+ M
Sbjct: 802  RILIAEDHPVNMKVARAVLSRLGY-MDVTSAKDGAEALTKVKAEAKGLDAFDIVLMDLHM 860

Query: 914  PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE 973
            P M G++  + +RS                   P+S       ++PIIA+TA+A+ ES +
Sbjct: 861  PNMGGIECAQSLRS-----------------EYPAS-------KVPIIAVTADAIEESRQ 896

Query: 974  ECFANGMDSFVSKPVTFQKLKECLEQY 1000
            EC A G D++++KP   +++++ + ++
Sbjct: 897  ECLAAGFDAYLTKPFKIEQIRDTISRH 923


>gi|168024653|ref|XP_001764850.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683886|gb|EDQ70292.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1114

 Score =  166 bits (419), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 130/388 (33%), Positives = 186/388 (47%), Gaps = 60/388 (15%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LAT+SHEIR+P+ GV+ M  +L  T L  +Q   + V  SSG+ ++ LIND+LDLSK+E
Sbjct: 458 FLATVSHEIRTPMNGVIGMTNLLMGTDLSSQQLDYVKVAQSSGNALIALINDVLDLSKIE 517

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAASLQK----ILMLEGDIADDVPIEVIGDVLRIRQI 488
           +G M+LE+  F  R+ V  V       LQ+    + ML   + + VP  V GD  R RQI
Sbjct: 518 AGKMELESVSFNLRKEVDSVFTLFDEKLQQKKLEVFML---VHEAVPTCVTGDPGRFRQI 574

Query: 489 LTNLISNAIKFTPEGKVGIKLYVV-PEPPFAKEGLKQKSKAY-----QSATDAVKEEKHQ 542
           L NL+SNA+KFT EG + + + V+ P      +        Y     Q A+ +++  +  
Sbjct: 575 LVNLVSNALKFTKEGSILVSVRVMDPHSEADDQDYPSSDSVYILDPAQKASGSIQMSQMV 634

Query: 543 PKSQTASDQN-----GFH--DKKHGEGYQDHKHDDDPG-----------------TPVSH 578
           P +      N     G    +     G    +    PG                 T +S 
Sbjct: 635 PNASPKKSYNYPQIEGVKRDESDLARGNTAPRLSMHPGDEANTREAVAAWRAWKLTTISG 694

Query: 579 GNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQ 638
            N+       TV +   V DTGIGIP +    LF+ + Q  +  +R+YGGTG+GL+IC++
Sbjct: 695 RNACKPPKNFTVIV--SVEDTGIGIPLHLQNRLFQPFSQADSSTSREYGGTGIGLSICQK 752

Query: 639 LVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSD--------DPDDLSD-------M 683
           LV+LM G LTV SK   GS F F LP  V   EE+ D         P+D +        +
Sbjct: 753 LVKLMNGALTVKSKPGEGSVFEFTLPLSVP--EESGDKLSCCVKASPEDKTKLRGMHVAL 810

Query: 684 ADQDSVTDDVTAGFFQFQPRTLGSLFSS 711
            D + V  +VTA +     R LG    S
Sbjct: 811 VDSNIVRQEVTASYL----RCLGICIDS 834



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 87/145 (60%), Gaps = 13/145 (8%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN----YDLILMDVCMPVM 916
            ++L+V+DN +N  VA SM+ + G  +  VN GVEAV+AV+ Q     +DL+LMD+ MP M
Sbjct: 950  RLLVVDDNMVNRRVASSMLTRYGAIVSTVNGGVEAVNAVKNQKIGKEFDLVLMDIQMPEM 1009

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG +ATR IR +E     D       +  + +        R+P++A+TA+ + ++   CF
Sbjct: 1010 DGWEATRRIRRWE----LDCC-----KLCLNTCEDFCPHHRLPVVAVTADVVVQTRSMCF 1060

Query: 977  ANGMDSFVSKPVTFQKLKECLEQYF 1001
            A GMD +++KP+  ++L   L+++ 
Sbjct: 1061 AAGMDDYITKPLDQKQLHALLDRFL 1085


>gi|15238222|ref|NP_196629.1| calmodulin-binding protein-like protein [Arabidopsis thaliana]
 gi|10129646|emb|CAC08242.1| putative protein [Arabidopsis thaliana]
 gi|67633796|gb|AAY78822.1| calmodulin-binding protein-related [Arabidopsis thaliana]
 gi|332004197|gb|AED91580.1| calmodulin-binding protein-like protein [Arabidopsis thaliana]
          Length = 241

 Score =  166 bits (419), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 85/165 (51%), Positives = 118/165 (71%), Gaps = 6/165 (3%)

Query: 5   METDLIEDMDIEGLPSMWPEDIG--SDKQFNVERPGGGQDMLEEVTIPEDQTIVDFKRLL 62
           MET+ IE+MD+E L SMWPE++G  +DKQFNVE+P    DML+EVTI E  TI D  RL 
Sbjct: 1   METNQIEEMDVEVLSSMWPENVGPEADKQFNVEKPAIDLDMLKEVTIEEKPTIADLTRLP 60

Query: 63  ELTNYTDKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEHRFEE 122
           EL + T +GSSQ+  LVK WEY Q+NAVRLLREEL NL RQR+E+E K+L+I+EE+ FE 
Sbjct: 61  ELLSLTQQGSSQLTNLVKQWEYMQNNAVRLLREELKNLDRQREEAEAKELKIIEEYNFE- 119

Query: 123 EGYGGDKRPISIMDELSDMWKDVCPRKNDVVFQSKRVEVDAEYDT 167
                    +S++DE SD+++    ++ +V+  SK++E+  E+D+
Sbjct: 120 ---SHQPEYVSVLDETSDLFRGFRQKRREVLVDSKKIEIYEEFDS 161


>gi|414872484|tpg|DAA51041.1| TPA: putative histidine kinase family protein [Zea mays]
          Length = 997

 Score =  166 bits (419), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 184/354 (51%), Gaps = 33/354 (9%)

Query: 318 GETIGVNYMGMD-VTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLAT 376
           G  +G  +   D V +  RK E++ K  E   V K+                   Q LAT
Sbjct: 352 GYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKS-------------------QFLAT 392

Query: 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
           +SHEIR+P+ GV+ M ++L +T L   QR         G  ++ LIN++LD +K+E+G +
Sbjct: 393 VSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKL 452

Query: 437 KLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
            LE+  F  R ++  V+   ++ S +K + L   +++ VP  ++GD  R RQI+TNL+ N
Sbjct: 453 DLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGN 512

Query: 496 AIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ-PKSQTASDQNGF 554
           +IKFT  G + +++++      A E    K ++  +  +  K+EK     S + +  +GF
Sbjct: 513 SIKFTERGHIFVQVHLADHSNLATE---PKVESVANGMNGHKDEKTAVATSVSLNTLSGF 569

Query: 555 HDKKHGEGYQDHKHDDDPGTPVSH-GNSMD-EDLEATVWIRCDVYDTGIGIPENALPTLF 612
                   +++ K        +S+  N M  E +   V +   V DTGIGIP +A   +F
Sbjct: 570 EAADSRNSWENFK------LLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVF 623

Query: 613 RKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
             +MQ  +  +R YGGTG+GL+I K LVELMGG++   S+ H GSTFTF    Q
Sbjct: 624 TPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQ 677



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 84/141 (59%), Gaps = 4/141 (2%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N+ VA   +K+ G  ++ V +G +A+ ++Q    + L LMD+ MP MDG +
Sbjct: 854  ILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGFE 913

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ IR+ E   N  A A    E    +  +  H   +P++AMTA+ +  + EEC   GM
Sbjct: 914  ATKQIRAMEAKANEQAVACDDSETDGATRAARWH---LPVLAMTADVIQATHEECTKYGM 970

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +V+KP   ++L + L+++ 
Sbjct: 971  DGYVTKPFEEKQLFQALQKFL 991


>gi|90022762|ref|YP_528589.1| putative periplasmic ligand-binding sensor protein [Saccharophagus
            degradans 2-40]
 gi|89952362|gb|ABD82377.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
            2-40]
          Length = 1653

 Score =  165 bits (418), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 131/426 (30%), Positives = 196/426 (46%), Gaps = 75/426 (17%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +   V DTGIGI E  +P LF  + QV A   RKYGGTGLGLAICK+L  LMGG + +TS
Sbjct: 1157 LNISVADTGIGIAEEKIPLLFSAFTQVDASTTRKYGGTGLGLAICKKLCALMGGDINITS 1216

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSS 711
            +   GS F+F +      + +NS    DL  + +Q    +D T             +F +
Sbjct: 1217 QEGNGSEFSFQI------LVKNSVKNIDLPPLIEQKVDLNDKT-------------IFIA 1257

Query: 712  NGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEP 771
                ++  +L N I       V+       S P +N      P+ D   +     T  E 
Sbjct: 1258 ESNPKNTAILENMISSKRCIAVS-------SLPDSNLNLPNEPI-DVAFIDRKLLTSMES 1309

Query: 772  ESSFSHSPEPENE-----TEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNE 826
             +   + P   N      T +++ K     T   F    T+  + S      +++ K + 
Sbjct: 1310 ITPLKNKPNFANTQWLMLTAINQTKDIENYTAKGFDTYLTKPITQS-GLTLSLKSLKLDS 1368

Query: 827  PQKICEMQEKPDRIS--QSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
             Q   E Q+  ++++  QSP   +++          +ILLV+DN +N  VAK M++  G 
Sbjct: 1369 NQAESEQQQTSEKLTLPQSPQGEASQFA-------ARILLVDDNTVNQDVAKMMLEDFGL 1421

Query: 885  SIDVVNNGVEAVHAVQC----QNYDLILMDVCMPVMDGLKATRLIRS----FEDTGNWDA 936
             IDV NNG+EA+ A+      + Y LILMD  MP +DG + T+ IR     F++T     
Sbjct: 1422 IIDVANNGLEAIAALDACSIREPYSLILMDCQMPELDGYETTKRIRKGATDFDNT----- 1476

Query: 937  AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKEC 996
                                +IPIIAMTANA+    E+C A GMD ++SKP+    L+  
Sbjct: 1477 --------------------KIPIIAMTANAMKGDKEKCIAAGMDDYLSKPIEADALEHM 1516

Query: 997  LEQYFP 1002
            L+ + P
Sbjct: 1517 LKLWLP 1522



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 97/176 (55%), Gaps = 14/176 (7%)

Query: 338  EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
            E    +RE    Q+A    L K  +  E   R K + LA MSHEIR+PL GV+ M  ++ 
Sbjct: 977  ENTRAIRERDNAQQA----LVKAKNAAELAARTKSEFLAMMSHEIRTPLNGVLGMLNLVK 1032

Query: 397  NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
             T+L+ +QR  + +  SS + +L LINDILD SKV++G + LE   F     +  +L+  
Sbjct: 1033 RTQLEDKQRYQIDIAKSSAESLLNLINDILDFSKVDAGKLDLEVVDFN----IITLLEDI 1088

Query: 457  AASLQKILMLEGD--IADDVPIEVI---GDVLRIRQILTNLISNAIKFTPEGKVGI 507
            A ++    +  G+  I D   +E     GD  R+RQIL NLI NAIKFT  G+V +
Sbjct: 1089 AHAMAGRALERGNELIIDTTKLEFTYLSGDPSRLRQILVNLIGNAIKFTQNGEVTV 1144


>gi|162458745|ref|NP_001105858.1| LOC732762 [Zea mays]
 gi|89242033|dbj|BAE80687.1| histidine kinase [Zea mays]
          Length = 995

 Score =  165 bits (418), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/354 (32%), Positives = 184/354 (51%), Gaps = 33/354 (9%)

Query: 318 GETIGVNYMGMD-VTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLAT 376
           G  +G  +   D V +  RK E++ K  E   V K+                   Q LAT
Sbjct: 350 GYIVGAAWSRYDNVKEDCRKMEELKKQAEAADVAKS-------------------QFLAT 390

Query: 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
           +SHEIR+P+ GV+ M ++L +T L   QR         G  ++ LIN++LD +K+E+G +
Sbjct: 391 VSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKIEAGKL 450

Query: 437 KLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
            LE+  F  R ++  V+   ++ S +K + L   +++ VP  ++GD  R RQI+TNL+ N
Sbjct: 451 DLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPELLLGDPGRFRQIITNLVGN 510

Query: 496 AIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ-PKSQTASDQNGF 554
           +IKFT  G + +++++      A E    K ++  +  +  K+EK     S + +  +GF
Sbjct: 511 SIKFTERGHIFVQVHLADHSNLATE---PKVESVANGMNGHKDEKTAVATSVSLNTLSGF 567

Query: 555 HDKKHGEGYQDHKHDDDPGTPVSH-GNSMD-EDLEATVWIRCDVYDTGIGIPENALPTLF 612
                   +++ K        +S+  N M  E +   V +   V DTGIGIP +A   +F
Sbjct: 568 EAADSRNSWENFK------LLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDAQAKVF 621

Query: 613 RKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
             +MQ  +  +R YGGTG+GL+I K LVELMGG++   S+ H GSTFTF    Q
Sbjct: 622 TPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTFTAALQ 675



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 84/141 (59%), Gaps = 4/141 (2%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N+ VA   +K+ G  ++ V +G +A+ ++Q    + L LMD+ MP MDG +
Sbjct: 852  ILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALASLQVPHKFHLCLMDIQMPEMDGFE 911

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ IR+ E   N  A A    E    +  +  H   +P++AMTA+ +  + EEC   GM
Sbjct: 912  ATKQIRAMEAKANEQAVACDDSETDGATRAARWH---LPVLAMTADVIQATHEECTKYGM 968

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +V+KP   ++L + L+++ 
Sbjct: 969  DGYVTKPFEEKQLFQALQKFL 989


>gi|224108221|ref|XP_002314765.1| histidine kinase cytokinin receptor [Populus trichocarpa]
 gi|190148365|gb|ACE63265.1| cytokinin receptor 1B [Populus trichocarpa]
 gi|222863805|gb|EEF00936.1| histidine kinase cytokinin receptor [Populus trichocarpa]
          Length = 1006

 Score =  165 bits (418), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/296 (36%), Positives = 160/296 (54%), Gaps = 14/296 (4%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T L   QR         G  ++ LIN++LD +K+
Sbjct: 385 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQVCGKALIALINEVLDRAKI 444

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R +V  VL   +  S  K + L   ++D VP  V+GD  R RQI+T
Sbjct: 445 EAGKLELEAVPFHIRSIVDDVLSLFSEKSRNKGIELAVFVSDKVPEIVVGDPGRFRQIIT 504

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAV-----KEEKHQPKS 545
           NL+ N++KFT  G   +K+++  E   A    K  +     + ++V     ++ K     
Sbjct: 505 NLVGNSVKFTERGHTFVKVHLY-EHAKATTDTKADTCLIGGSNESVLISGSQKFKTLSGC 563

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
           + A DQN +   KH     D     D    V   N   E++   V   C V DTGIGIP 
Sbjct: 564 EAADDQNSWDVFKH---LSDEDFRFDASINVMTSNEASENITLMV---C-VEDTGIGIPL 616

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
            A   +F  ++Q  +  +R YGGTG+GL+I K LVELMGG+++  S+   GSTF+F
Sbjct: 617 KAQSRVFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGQISFISRPEVGSTFSF 672



 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 5/142 (3%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN++N  VA   +K+ G  ++  ++G EA+  +Q    +D   MD+ MP MDG 
Sbjct: 861  KILVVDDNRVNRRVAAGALKKFGADVECADSGKEALKLLQLPHTFDACFMDIQMPEMDGF 920

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E   N     E+ +E      G  +    IPI+AMTA+ +  + +EC   G
Sbjct: 921  EATRRIRQMESQANEQMNGESMVEGGTARKGQWH----IPILAMTADVIHATHDECLKCG 976

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + ++F
Sbjct: 977  MDGYVSKPFEEENLYQAVARFF 998


>gi|412990839|emb|CCO18211.1| multi-sensor hybrid histidine kinase [Bathycoccus prasinos]
          Length = 1058

 Score =  165 bits (418), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/377 (31%), Positives = 186/377 (49%), Gaps = 46/377 (12%)

Query: 354 ETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMI 412
           E E  K + I      +K + LA MSHEIR+PL G++++ ++L +TKLDR QR L+  M 
Sbjct: 242 EIEALKRVAIANAATESKSKFLAHMSHEIRTPLNGLIAVGQLLEDTKLDRVQRDLVTTMQ 301

Query: 413 SSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIAD 472
           SSG+ +  LI+DILD S+VE+  + L    F P  V+ +VL+       ++ +  G   D
Sbjct: 302 SSGETLQALISDILDFSRVEAEKLSLAKEPFNPEAVIANVLEIVGIHAGRLKLNVGYHVD 361

Query: 473 D-VPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAK------------ 519
           + VP  V+GD +R++Q+L N I+NAIKFT +G + ++LY+   P   K            
Sbjct: 362 EGVPKTVLGDAMRVQQVLLNSINNAIKFTEKGDIMVRLYIGMAPKTKKMQRVNSSLAMND 421

Query: 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASD--------QNGFHDKKHGEGYQDHKHDD- 570
           + +   SK          ++  QP+ +  S         Q  FH++   E     + +D 
Sbjct: 422 DWITPLSKLAHMCPHFSPKDGEQPQEKAGSGEGEAEEKAQCPFHNQHSTEQKLQQQQNDI 481

Query: 571 ----------DPGTPVSHGNSM--------DEDLEATVWIRCDVYDTGIGIPENALPTLF 612
                       G   +H  ++         E+ +  V++   V DTGIG+  N +  +F
Sbjct: 482 KRSHELSEATGKGAATTHSGTVGSGNQSGGSENNDKPVYLHFYVKDTGIGLSANMIREVF 541

Query: 613 RKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK-VHCGSTFTFILPYQVSPIE 671
             + QV     RK+ G+GLGLAI ++L E MGG +   S+ +  GSTF F +  QV+   
Sbjct: 542 NSFRQVDDGTTRKFDGSGLGLAISRKLCEAMGGTIWAESEGLGKGSTFHFCVKCQVA--- 598

Query: 672 ENSDDPDDLSDMADQDS 688
            N +D  D  +  D  S
Sbjct: 599 -NENDMTDKRESIDNTS 614



 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 33/157 (21%)

Query: 850  EVPETK-PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVV--NNGVEAVHAVQ-----C 901
            + PE+  P PK +ILL ED+ IN+ VAK+++ + G   DVV   +GV A+  ++      
Sbjct: 906  KAPESAGPPPKLRILLAEDHLINMKVAKAVLGKCGCD-DVVWAKDGVVALELIEKEEQGV 964

Query: 902  QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII 961
              +D+ILMD+ MP   GL+  R IR                 +  P S       +IPI+
Sbjct: 965  DAFDIILMDLHMPRCGGLECVRKIR-----------------EQYPDS-------KIPIV 1000

Query: 962  AMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
            A+TA+A++ES + C  +G   +++KP   +++K  ++
Sbjct: 1001 AVTADAMTESRDNCMRDGFTGWLTKPFRIEQIKSLVD 1037


>gi|255084467|ref|XP_002508808.1| predicted protein [Micromonas sp. RCC299]
 gi|226524085|gb|ACO70066.1| predicted protein [Micromonas sp. RCC299]
          Length = 1097

 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 194/375 (51%), Gaps = 38/375 (10%)

Query: 314 FSKSGETIGVNYMGMDVTDQVRKREK-----MAKLREEIAVQKAKETELNKTIHITEETM 368
           + K+GE   VNY+ +      R R        + + E I  + A+   L K    T  T 
Sbjct: 287 YRKNGEEF-VNYLSLTPIRTARGRVTHYVGIQSDVTELINTRTAELDALKKATIATAATE 345

Query: 369 RAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
              + LA MSHEIR+PL G++++ ++L +T L+R QR  +  + SSG+ +  LI+DILD 
Sbjct: 346 AKSKFLAHMSHEIRTPLNGLIAVGQLLEDTNLNRVQRDYVTTIRSSGETLQALISDILDF 405

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADD-VPIEVIGDVLRIRQ 487
           S+VE+  + L    F P+ V+  V++       ++ +  G   D+ VP  V+GD +R++Q
Sbjct: 406 SRVEADKLVLRHEPFHPQAVIATVMEIVGLHSSRLKLNVGYHVDEGVPESVMGDAMRVQQ 465

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQT 547
           +L N ++NAIKFT +G + I+LY+        +   +  +A ++A +AV+EEK     Q 
Sbjct: 466 VLLNTLNNAIKFTEKGDIMIRLYLRKR----SDAEAEYQRAMETANNAVEEEKSAGTEQM 521

Query: 548 ASDQNGFHDKKHGEGYQDHKH-----------------DDDPGTPVSHGNSMDEDLEATV 590
              +  + +++   G Q+ +                  DD+PG P S  +  D+      
Sbjct: 522 HQARE-WREEQTKRGMQEQQRRLKSVDWLRRSSTSPADDDEPG-PASDASDGDD------ 573

Query: 591 WI-RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           W+    V DTGIG+  + + ++F+ + QV     RKY GTGLGLAI ++L E MGGR+  
Sbjct: 574 WVLHFYVKDTGIGLNSSNIDSIFKSFQQVDLSPTRKYDGTGLGLAISQRLCEAMGGRMWA 633

Query: 650 TS-KVHCGSTFTFIL 663
            S  +  GS F F +
Sbjct: 634 ESPGLGMGSIFHFCV 648



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 95/170 (55%), Gaps = 32/170 (18%)

Query: 841  SQSPSSSSAEVPETKPK--PKPKILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVH 897
            S +P S S++ PE KPK   K +ILL ED+ IN+ VA +++ + GH  I +  +GVE + 
Sbjct: 939  SSAPVSDSSKDPEVKPKLPKKMRILLAEDHLINMKVACAVLAKCGHKDITIAKDGVEVIE 998

Query: 898  AVQC-----QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
             +        ++D++LMD+ MP M GL+  + +RS                   P S   
Sbjct: 999  KLALLPSGLDSFDIVLMDLHMPRMGGLECVKQLRSL-----------------YPQS--- 1038

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                ++PI+A+TA+A+ ES ++C  NG +S++SKP   ++L+  L+++ P
Sbjct: 1039 ----KVPIVAVTADAVEESRDKCLKNGFNSWISKPFRIEQLEGLLDEFVP 1084


>gi|356499590|ref|XP_003518621.1| PREDICTED: histidine kinase 4-like [Glycine max]
          Length = 988

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 189/359 (52%), Gaps = 13/359 (3%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T+L   QR       + G  ++ LIN++LD +K+
Sbjct: 384 QFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKI 443

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K L L   ++D VP  V+GD  R RQI+T
Sbjct: 444 EAGKLELEAVPFDLRSIIDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIIT 503

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSA-TDAVKEEKHQPKSQTAS 549
           NL+ N++KFT +G + +K+++       K  +  K + + +  +D V         +T S
Sbjct: 504 NLVGNSVKFTEQGHIFVKVHLADN---RKSMMNGKHETFLNGESDEVFYISGDYHFKTLS 560

Query: 550 DQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALP 609
                 ++   + ++    D + G   S       +    V +R  V DTGIGIP +A  
Sbjct: 561 GCEAADERNSWDNFKHLIADKEYGLDSSRETMAACESSEQVTLRVCVEDTGIGIPFSAQD 620

Query: 610 TLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL---PYQ 666
            +F  ++Q  +  +R YGGTG+GL+I K LVELMGG++   S+   GSTF+F      ++
Sbjct: 621 RIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTAVCGAFK 680

Query: 667 VSPIEENSDDPDDL-SDMADQDSVTDD---VTAGFFQFQPRTLGSLFS-SNGTSRSKKL 720
            S + +  ++ +DL S+      +  D   V A   ++  + LG L   +N  S++  L
Sbjct: 681 KSSVTDKKENLEDLPSNFRGMKVIVVDGKPVRASVTRYHLKRLGILVKVANSISKAVAL 739



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 15/142 (10%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  +    +G  A+  +Q   N+D   MD+ MP MDG 
Sbjct: 853  KILVVDDNGVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDACFMDIQMPEMDGF 912

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +AT  IR  E   N +            ++G+  H   +PI+AMTA+ +  + ++C   G
Sbjct: 913  EATSRIRMMESKANEEM-----------NNGNEWH---VPILAMTADVIHATYDKCMKCG 958

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + ++F
Sbjct: 959  MDGYVSKPFEEENLYQEVAKFF 980


>gi|224131798|ref|XP_002321181.1| histidine kinase cytokinin receptor [Populus trichocarpa]
 gi|222861954|gb|EEE99496.1| histidine kinase cytokinin receptor [Populus trichocarpa]
          Length = 1234

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 167/298 (56%), Gaps = 19/298 (6%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L  T LD  Q        +SG  ++ LIN++LD +K+
Sbjct: 635 QFLATVSHEIRTPMNGVLGMLQMLMETDLDVNQMDYANTAHTSGKDLIALINEVLDQAKI 694

Query: 432 ESGVMKLEAAKFRPREVVKHVLQ--TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           ESG ++LEA  F  R V+ +VL   +  ++ + I  L   ++D +P  VIGD  R RQI+
Sbjct: 695 ESGRLELEAVPFDLRSVLDNVLSLFSGKSNEKGIEKLAVYVSDRLPEVVIGDPGRFRQII 754

Query: 490 TNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTA 548
           TNL+ N+IKFT + G V + +++  E    +  L  +    +   + V++      S+  
Sbjct: 755 TNLVGNSIKFTRDKGHVFVSVHLADE---VRSPLDARDAVLKQGLELVQDTS----SKVY 807

Query: 549 SDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608
              +GF      + ++  K         S  +S DE     + +   V DTG+GIPE+A 
Sbjct: 808 DSLSGFPVVNRWKSWEKFKKS-------SCIDSRDE--PEMIRLLVTVEDTGVGIPEDAQ 858

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
             +F  +MQ  +  +RKYGGTG+GL+I K LV+LMGG +   S+   GSTF+FI+ ++
Sbjct: 859 GNIFTPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSECGIGSTFSFIVSFR 916



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 7/143 (4%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA+  +K+ G  +  V +G  A+  ++   ++D   MD  MP MDG 
Sbjct: 1097 QILVVDDNLVNRRVAEGALKKHGAIVTCVESGKAALEKLKPPHSFDACFMDFQMPEMDGF 1156

Query: 920  KATRLIRSFEDTGNWD-AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            +ATR IRS E   N   A+ +A +E  +P + +  H    PI+AMTA+ +  + EEC   
Sbjct: 1157 EATRQIRSMESQFNEKIASGKASME--LPGNVAYWH---TPILAMTADVIQATNEECLKC 1211

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GMD +VSKP   +KL   + ++F
Sbjct: 1212 GMDGYVSKPFEDEKLYNAVTRFF 1234


>gi|356521173|ref|XP_003529232.1| PREDICTED: histidine kinase 4-like [Glycine max]
          Length = 987

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 158/291 (54%), Gaps = 3/291 (1%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T+L   QR       + G  ++ LIN++LD +K+
Sbjct: 384 QFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKI 443

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K L L   ++D VP  V+GD  R RQI+T
Sbjct: 444 EAGKLELEAVPFDLRSIIDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIIT 503

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + +K+++         G  +        +D V         +T S 
Sbjct: 504 NLVGNSVKFTEQGHIFVKVHLADNRKSIMNG--KHDTFLNGESDEVFHISGDYHFKTLSG 561

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                ++   + ++    D++ G   S       +    V +R  V DTGIGIP +A   
Sbjct: 562 CEAADERNSWDNFKHLIADEEYGLDSSRETMAACESSEQVTLRVCVEDTGIGIPFSAQDG 621

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           +F  ++Q  +  +R YGGTG+GL+I K LVELMGG++   S+   GSTF+F
Sbjct: 622 IFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSF 672



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 16/142 (11%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  +    +G  A+  +Q   N+D   MD+ MP MDG 
Sbjct: 853  KILVVDDNGVNRRVAAGALKKFGADVKCAESGKVALEMLQLPHNFDACFMDIQMPEMDGF 912

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +AT  IR  E   N +             +GS  H   +PI+AMTA+ +  + ++C   G
Sbjct: 913  EATSRIRMMESKANEEM------------NGSEWH---VPILAMTADVILATYDKCVKCG 957

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + ++F
Sbjct: 958  MDGYVSKPFEEENLYQEVAKFF 979


>gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
 gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
          Length = 1369

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/326 (36%), Positives = 160/326 (49%), Gaps = 67/326 (20%)

Query: 345 EEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
           ++I  +K  E EL +     E   RAK + +A MSHEIR+P+ GV+ MAE+L +T L  E
Sbjct: 607 QDITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDTPLTPE 666

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-K 462
           QR+    + SSG+ +L ++NDILD SK+E+G + LE   F   + V+ V+   A     K
Sbjct: 667 QREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAK 726

Query: 463 ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGL 522
            L L   I   VP  + GD  R+RQ+LTNLI NAIKFT EG+V +               
Sbjct: 727 GLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVV--------------- 771

Query: 523 KQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSM 582
                    +    KEEK   KS  A ++ G                             
Sbjct: 772 ---------SASLSKEEKK--KSAPAGERGG----------------------------- 791

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
                  + +R +V D+GIGI E     LF  + Q  A   R+YGGTGLGLAI +QLVE+
Sbjct: 792 ------EIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVEM 845

Query: 643 MGGRLTVTSKVHCGSTF----TFILP 664
           MGG + + S    GSTF     F+LP
Sbjct: 846 MGGEIGLKSSPKEGSTFHFSARFVLP 871



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 83/161 (51%), Gaps = 38/161 (23%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV------------------- 899
            +P ILL EDN +N  VA SM+K+LG+ +++  NG EA+  +                   
Sbjct: 1070 RPLILLAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGS 1129

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
              + Y  +LMD+ MP MDGL+ATR IRS E+ G                        R P
Sbjct: 1130 PKKKYAAVLMDIQMPKMDGLEATRRIRSKEEEGVL-------------------RLPRTP 1170

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            IIAM+A+A+ E  E     GMD ++SKPV  ++LKE LE++
Sbjct: 1171 IIAMSAHAMQEDRERALKAGMDHYISKPVKKEQLKEALERF 1211


>gi|46390553|dbj|BAD16039.1| putative histidine kinase 1 [Oryza sativa Japonica Group]
          Length = 984

 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/333 (34%), Positives = 174/333 (52%), Gaps = 34/333 (10%)

Query: 372 QMLATMSHEIRSPLTGV------------VSMAEILSNTKLDREQRQLLGVMISSGDLVL 419
           Q LAT+SHEIR+P+ GV            V M ++L  T L   Q+         G  ++
Sbjct: 360 QFLATVSHEIRTPMNGVLVVQRSKILPFDVGMLDMLLGTDLSMTQKDYAQTAQMCGRALI 419

Query: 420 QLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEV 478
            LIND+LD +K+E+G ++LEA  F  R ++  V+   ++ S +K + L   + DDVP  V
Sbjct: 420 TLINDVLDRAKIEAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPKVV 479

Query: 479 IGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKE 538
           IGD  R RQILTNL+ NA+KFT  G V +++ +        E  K ++    + T   K+
Sbjct: 480 IGDPWRYRQILTNLVGNAVKFTERGHVFVRVCLA-------ENSKVEANQVLNGTMNGKD 532

Query: 539 EKHQPKSQTASDQ-NGFH--DKKHGEGY------QDHKHDDDPGTPVSHGNSMDEDLEAT 589
            K +  +  A +  +GF   D+++   Y          H D+     S+ N  D      
Sbjct: 533 GKVETTANGAFNTLSGFQAADERNNWDYFKLLLSDKEPHMDELECDRSYQNDCD-----C 587

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V +   + DTG+GIP +A   +F  +MQ  +  +R YGGTG+GL+I K L ELMGG+++ 
Sbjct: 588 VTLMISIEDTGVGIPLHAQDRVFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQISF 647

Query: 650 TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSD 682
           TS+   GSTFTF    + S  + +SD    LS+
Sbjct: 648 TSRPFVGSTFTFSAVLKRSCKDTSSDSKRSLSE 680



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 11/141 (7%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ---CQNYDLILMDVCMPVMDG 918
           IL+V+DNK+N+ VA + +K+ G  +  V +G +AV  +Q   C  +D   MDV MP MDG
Sbjct: 842 ILIVDDNKVNLRVAAAALKKYGAKVHCVESGKDAVSLLQQPHC--FDACFMDVQMPEMDG 899

Query: 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            +ATR IR  E   N +  A   +E      GS+     +P++AMTA+ +  + EEC  +
Sbjct: 900 FEATRQIRQMEVKANEERKALDLME------GSTFVESHLPVLAMTADVIQATYEECIKS 953

Query: 979 GMDSFVSKPVTFQKLKECLEQ 999
           GMD +VSKP   ++L + + +
Sbjct: 954 GMDGYVSKPFDEEQLYQAVSR 974


>gi|262198726|ref|YP_003269935.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
 gi|262082073|gb|ACY18042.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
          Length = 885

 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/304 (36%), Positives = 159/304 (52%), Gaps = 34/304 (11%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA+MSHEIR+PL G++ M+ +L +T+LD EQR+L   +  SG  +L LIN+ILD SK+
Sbjct: 319 EFLASMSHEIRTPLNGIIGMSTLLLDTELDDEQRELAKTIDDSGAALLGLINNILDFSKI 378

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAAS-LQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++ E  +F   E V       A S   K L L  DI   VP  VIGD  R+RQ++ 
Sbjct: 379 ESGKLEFEHRRFDLHECVASACDAVATSAAAKGLELICDIKPQVPQVVIGDAGRVRQLVL 438

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ NA+KFT  G+V ++L + P            ++A     D  +      ++ + SD
Sbjct: 439 NLLGNAVKFTASGEVLVRLSLAP------------ARASSIPGDGGRLAGDGARAGSESD 486

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                    G G   H+   DPG              A   +R  V DTG+GI  + +  
Sbjct: 487 VR----SDLGSGV--HR---DPGA------------GALCRLRLSVRDTGLGIHPDDISR 525

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
           LFR + Q+ +  ARKYGG+GLGLAI ++L  LM G ++V S    G   TF +   V  +
Sbjct: 526 LFRSFRQLDSSTARKYGGSGLGLAISRRLARLMDGDISVESAGVPGRGSTFQVELCVRRV 585

Query: 671 EENS 674
            E+S
Sbjct: 586 IEDS 589



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 33/183 (18%)

Query: 815 NREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMV 874
           N+E+  T+    P  + E          S S   A++ E  P    +IL+VEDN +N ++
Sbjct: 718 NQEITPTTAMPTPVPVSE--------RASGSVFEADLAERVPL---RILVVEDNALNQLL 766

Query: 875 AKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNW 934
              ++++LG+  D+  NGVEA+ A + ++YD+I MD+ MP+MDGL+AT  +R  +  G  
Sbjct: 767 LMRLLERLGYRADLATNGVEALAAAEDRSYDIIFMDMQMPLMDGLEATAELRRRQPEGT- 825

Query: 935 DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLK 994
                                +R  IIA+TANA ++    C A GMD +++KP+    LK
Sbjct: 826 ---------------------QRPRIIALTANATADDRARCLAAGMDHYLAKPIEVAALK 864

Query: 995 ECL 997
             L
Sbjct: 865 AAL 867


>gi|88319749|emb|CAF31355.1| putative histidine kinase [Cucurbita maxima]
          Length = 981

 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 162/294 (55%), Gaps = 11/294 (3%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T L   Q+       + G  ++ LIN++LD +K+
Sbjct: 380 QFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKI 439

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S QK L L   ++D VP  VIGD  R RQI+T
Sbjct: 440 EAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIIT 499

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFA--KEGLKQKSKAYQSATDAVKEEKHQPKSQTA 548
           NL+ N++KFT  G + +K+++      +   E +   S +     D  +E +     + A
Sbjct: 500 NLVGNSVKFTERGHIFVKVHLAENSKVSMDSEYVNGISDSGLFVLDG-REFQTLSGREAA 558

Query: 549 SDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEAT-VWIRCDVYDTGIGIPENA 607
            DQN + + KH         DD+  +  +  NS   +     V +   V DTGIGI  +A
Sbjct: 559 DDQNSWDNFKHLIA------DDNFQSNAASNNSAVTNKGCDHVTLMVSVEDTGIGILLHA 612

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
              +F  +MQ  +  +R YGGTG+GL+I K LVELMGG++   S+   GSTF+F
Sbjct: 613 QNRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSF 666



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 82/143 (57%), Gaps = 15/143 (10%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN++N  VA   +K+ G  ++  ++G  A+  +Q   N+D   MD+ MP MDG 
Sbjct: 849  RILIVDDNRVNRRVAAGALKKFGADVECADSGKSALKLLQLPHNFDACFMDIQMPEMDGF 908

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR-IPIIAMTANALSESAEECFAN 978
            +ATR IR+ E   N     + G+        S+   KR IPI+AMTA+ +  + EEC   
Sbjct: 909  EATRRIRTMEVEAN-----KGGL--------SATEGKRPIPILAMTADVIHATYEECLKC 955

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GM+ +VSKP   + L + + ++F
Sbjct: 956  GMNGYVSKPFEEENLYKEVARFF 978


>gi|116109353|gb|ABJ74169.1| histidine kinase 1 [Medicago sativa]
          Length = 1027

 Score =  163 bits (413), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 164/291 (56%), Gaps = 21/291 (7%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M  +L +T LD  Q++ +     SG  ++ +IN++LD +K+
Sbjct: 443 QFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDQAKI 502

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R ++  VL   +   Q K + L   ++D VP ++IGD  R RQI+T
Sbjct: 503 ESGKIELEAVLFDIRAIMDDVLSLFSEKSQGKGVELAVYVSDQVPQQLIGDPGRFRQIIT 562

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT +G + + +++V E   + E  ++ +          K+ +H       +D
Sbjct: 563 NLMGNSIKFTDKGHIFVTIHLVEEVFHSIEVERESTS---------KDAEHTLSGFPVAD 613

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                 ++  EG++   H+   G   S  ++   DL + +     V DTG GIP  + P 
Sbjct: 614 -----GRRSWEGFRAFSHEGPLG---SFSSTSSNDLISLI---VSVEDTGDGIPLESQPM 662

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           +F  +MQV    +RK+GGTG+GL+I K LV LM G +   S+   GSTFTF
Sbjct: 663 IFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGSTFTF 713



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 18/142 (12%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  +  V++G+EA+  ++    +D   MD+ MP MDG 
Sbjct: 900  KILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLRPPHQFDACFMDIQMPEMDGF 959

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E+                 +      F  +PI+AMTA+ +  + +EC   G
Sbjct: 960  EATRRIREIEN-----------------NVKDRELFVHLPILAMTADVMQATHQECSKCG 1002

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   ++L   + ++F
Sbjct: 1003 MDGYVSKPFEAEQLYREVSKFF 1024


>gi|428215820|ref|YP_007088964.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
 gi|428004201|gb|AFY85044.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
          Length = 1860

 Score =  163 bits (413), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 145/293 (49%), Gaps = 59/293 (20%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            + LATMSHEIR+P+  V+ M  +L +T L+ +QR+ +  + +SGD +L +INDILD SK+
Sbjct: 1157 EFLATMSHEIRTPMNAVIGMTGLLLDTPLNADQREFVETIRTSGDGLLTIINDILDFSKI 1216

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
            ESG M LE   F  R  ++  L   A+ + +K L L   +A   P  +IGDV R+RQIL 
Sbjct: 1217 ESGKMDLEEHPFNLRTCIEECLDLVASKAAEKQLELAYLLAPQTPEGIIGDVTRLRQILV 1276

Query: 491  NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
            NL+SNA+KFT EG+  + +                               +    Q A  
Sbjct: 1277 NLLSNAVKFTQEGETIVAV-------------------------------NGTFVQDAQF 1305

Query: 551  QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
             N       G  YQ H    D G                           +GIP + +  
Sbjct: 1306 GNPMATATEGGVYQIHFSVKDTG---------------------------VGIPPDRMDR 1338

Query: 611  LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
            LF+ + QV +   RKYGGTGLGLAI K+L ELMGG + V S+V  GSTF F +
Sbjct: 1339 LFKSFSQVDSSTTRKYGGTGLGLAIAKRLSELMGGTMWVESQVGVGSTFHFTI 1391



 Score =  106 bits (264), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 92/164 (56%), Gaps = 18/164 (10%)

Query: 836  KPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA 895
            K  R+ + PS     +P    +P  KILL EDN +N  VA  +++++G+  DV +NG+EA
Sbjct: 1541 KDSRVHRVPSFPKQSIPLKSDRPL-KILLAEDNVVNQKVALRILERMGYRADVASNGLEA 1599

Query: 896  VHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955
            + A+  Q+YD+ILMDV MP MDGL+ATR I             E  + + +   G     
Sbjct: 1600 IAALNRQSYDVILMDVQMPEMDGLEATRHI-----------CKEWTLRRDISPMG----- 1643

Query: 956  KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
             R  IIAMTANA+    E C   GMD+++SKP+  + L + L +
Sbjct: 1644 -RPWIIAMTANAMQGDREICLQAGMDNYISKPIRMEALAQALAE 1686


>gi|119962503|ref|YP_948930.1| signal transduction histidine kinase [Arthrobacter aurescens TC1]
 gi|119949362|gb|ABM08273.1| putative signal transduction histidine kinase [Arthrobacter aurescens
            TC1]
          Length = 1153

 Score =  163 bits (413), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 196/429 (45%), Gaps = 86/429 (20%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R +V DTGIGI       LF  + Q  A   R+YGGTGLGLAI ++L E+MGG++ + S
Sbjct: 636  LRFEVRDTGIGISAENHQRLFESFAQADASTTRRYGGTGLGLAISRRLTEVMGGKIGLDS 695

Query: 652  KVHCGSTFTFILPYQVSPIEENSDD-PDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFS 710
            +   GS F F L   + P   +++  P  L+    +  V DD                  
Sbjct: 696  EPGVGSRFWFDLELPLGPAATDTESLPATLA--GRRVLVVDD------------------ 735

Query: 711  SNGTSR--------SKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVA 762
             N T+R        S  ++P S+  A++      +  S S P +        + D C   
Sbjct: 736  -NATNRLVLDTQLASWGMVPVSVADAASALDEYRAAASSSHPYD------IAVVDMCM-- 786

Query: 763  EVAETLSEPES-SFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQT 821
                    P++     +   +NE+  S G    +  TS  Q   ++ TS     RE +  
Sbjct: 787  --------PDTDGLQLARNIKNESNGSGGPGI-ILLTSTMQVERSDLTS--AGIREYL-- 833

Query: 822  SKTNEPQKICEMQEKPDRI-----SQSPSSSSAEVPETKPKPKP---KILLVEDNKINVM 873
                +P +  E+  +  R+     + +PS+ +   P     P P   K+L+ EDN++N +
Sbjct: 834  ---TKPVRSSELYNRLLRVLATKTTGAPSAPAINHPVETADPVPRLGKLLVAEDNEVNQL 890

Query: 874  VAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGN 933
            VA+ M  +LG+ + +V++G +AV A     Y  +LMD  MPVMDG  AT+ IR+      
Sbjct: 891  VARGMANRLGYEVHIVDDGEQAVSAALSGTYAAVLMDCHMPVMDGFDATKAIRA------ 944

Query: 934  WDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKL 993
                              + H  RIPIIAMTA AL E  E CFA GMD ++SKPV   KL
Sbjct: 945  -----------------RNGHSARIPIIAMTAGALDEDRERCFAAGMDDYISKPVDLAKL 987

Query: 994  KECLEQYFP 1002
             E L ++ P
Sbjct: 988  AEVLARWVP 996



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 340 MAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNT 398
           +A +  +I  +KA E EL        E  R K + LATMSHEIR+PL  V+ +  ++ +T
Sbjct: 447 VATISRDITERKAAEKELLAAREAALEASRLKSEFLATMSHEIRTPLNAVIGLTSLMMDT 506

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
            L   QRQ    +  +G+++L LINDILD SK+E+G + L+   F PRE+V+ V      
Sbjct: 507 PLSEGQRQYAQGVKGAGEVLLTLINDILDFSKLEAGKVDLDINAFDPRELVEEVAGLVVE 566

Query: 459 SLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPF 517
           + Q K L L      DVP  ++GD  RIRQIL NL SNA+KFTP+G+V +++ V+   P 
Sbjct: 567 AAQGKDLELISYCHPDVPARLMGDAGRIRQILLNLSSNAVKFTPDGEVEVQVSVLAHDPN 626

Query: 518 AKEGLKQKSKAYQ--SATDAVKEEKHQPKSQTASDQNGFHDKKHG 560
                 + S  ++       +  E HQ   ++ +  +    +++G
Sbjct: 627 LAHDPNKASLRFEVRDTGIGISAENHQRLFESFAQADASTTRRYG 671


>gi|357634107|ref|ZP_09131985.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|357582661|gb|EHJ47994.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 699

 Score =  163 bits (412), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 157/309 (50%), Gaps = 65/309 (21%)

Query: 355 TELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
           T+L++     E   RAK + LA MSHEIR+PL G++ M  +   T  D + R+ LG+   
Sbjct: 295 TDLHEAREDAERANRAKSEFLANMSHEIRTPLNGILGMTSLALMTCTDHKGREYLGLAQQ 354

Query: 414 SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIAD 472
           SG  +L +INDILD+SK+ES   +LE A+F PRE ++++ QT       K +  +  +A 
Sbjct: 355 SGQHLLGIINDILDISKIESQRFELEKAEFNPRETLENLFQTMRVEADAKGVRFDATVAP 414

Query: 473 DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSA 532
           DVP  VIGD  R+RQI  NLI N+IKFT  G+V +++ V                   +A
Sbjct: 415 DVPDCVIGDEGRLRQIYVNLIGNSIKFTTAGEVEVRVAV-------------------AA 455

Query: 533 TDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWI 592
           TD  +E                                    P + G       +  + +
Sbjct: 456 TDGRRE------------------------------------PAAMGG------KGRICL 473

Query: 593 RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
              + DTGIGIP+  L  +F  + QVS     +YGGTGLGL+I K+LVELMGGR+ V S+
Sbjct: 474 ISSIRDTGIGIPQKNLKRIFDTFAQVSV--GARYGGTGLGLSISKRLVELMGGRIWVESE 531

Query: 653 VHCGSTFTF 661
              GSTF F
Sbjct: 532 PGRGSTFHF 540



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 21/143 (14%)

Query: 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
           +P  +ILL EDN IN ++A  ++   GH +    NG E +  +   ++DLILMDV MP M
Sbjct: 570 QPGLRILLAEDNDINQILAVKLLTLQGHEVATAENGREVLARLAESDFDLILMDVRMPDM 629

Query: 917 DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
           DG++A R IR  E  G            A P          IPI+A+TA+AL+   E   
Sbjct: 630 DGVEAMRRIRDGEVPG------------ADPD---------IPIVAVTAHALAGDRERFL 668

Query: 977 ANGMDSFVSKPVTFQKLKECLEQ 999
           A G D +++KP+ F+ L   L +
Sbjct: 669 AEGFDGYLAKPLDFEALSGLLAE 691


>gi|30677959|ref|NP_849925.1| histidine kinase 4 [Arabidopsis thaliana]
 gi|75168993|sp|Q9C5U0.1|AHK4_ARATH RecName: Full=Histidine kinase 4; AltName: Full=Arabidopsis
           histidine kinase 4; Short=AtHK4; AltName: Full=Cytokinin
           receptor CYTOKININ RESPONSE 1; Short=AtCRE1;
           Short=Cytokinin receptor CRE1; AltName:
           Full=Phosphoprotein phosphatase AHK4; AltName:
           Full=Protein AUTHENTIC HIS-KINASE 4; AltName:
           Full=Protein ROOT AS IN WOL 1; AltName: Full=Protein
           WOODEN LEG
 gi|13537200|dbj|BAB40776.1| histidine kinase [Arabidopsis thaliana]
 gi|330250411|gb|AEC05505.1| histidine kinase 4 [Arabidopsis thaliana]
          Length = 1080

 Score =  162 bits (411), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 160/293 (54%), Gaps = 16/293 (5%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T+L   QR         G  ++ LIN++LD +K+
Sbjct: 475 QFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKI 534

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LE+  F  R ++  VL   +  S  K + L   ++D VP  V GD  R RQI+ 
Sbjct: 535 EAGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVPEIVKGDSGRFRQIII 594

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + +K+++        E  K +S+   +    V EE      Q++ +
Sbjct: 595 NLVGNSVKFTEKGHIFVKVHLA-------EQSKDESEPKNALNGGVSEEMIVVSKQSSYN 647

Query: 551 Q-NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDE-DLEATVWIRCDVYDTGIGIPENAL 608
             +G+        +   KH       VS   S+ E D+ + V +   + DTGIGIP  A 
Sbjct: 648 TLSGYEAADGRNSWDSFKH------LVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQ 701

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
             +F  +MQ  +  +R YGGTG+GL+I K LVELM G++   S+ H GSTF F
Sbjct: 702 GRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWF 754



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 17/142 (11%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  +    +G  A+  +Q    +D   MD+ MP MDG 
Sbjct: 946  KILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGF 1005

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E                  +   +N    +PI+AMTA+ +  + EEC  +G
Sbjct: 1006 EATRQIRMMEKE----------------TKEKTNLEWHLPILAMTADVIHATYEECLKSG 1049

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + + F
Sbjct: 1050 MDGYVSKPFEEENLYKSVAKSF 1071


>gi|18379305|ref|NP_565277.1| histidine kinase 4 [Arabidopsis thaliana]
 gi|42570645|ref|NP_973396.1| histidine kinase 4 [Arabidopsis thaliana]
 gi|11595487|emb|CAC18521.1| putative histidine kinase receptor [Arabidopsis thaliana]
 gi|11595489|emb|CAC18522.1| putative histidine kinase receptor [Arabidopsis thaliana]
 gi|11595491|emb|CAC18523.1| putative histidine kinase receptor [Arabidopsis thaliana]
 gi|20198055|gb|AAD21777.2| putative histidine kinase [Arabidopsis thaliana]
 gi|82569501|gb|ABB83393.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-SSRE-GFP]
 gi|82569506|gb|ABB83397.1| AtCRE1a [Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP]
 gi|330250412|gb|AEC05506.1| histidine kinase 4 [Arabidopsis thaliana]
 gi|330250413|gb|AEC05507.1| histidine kinase 4 [Arabidopsis thaliana]
          Length = 1057

 Score =  162 bits (411), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 160/293 (54%), Gaps = 16/293 (5%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T+L   QR         G  ++ LIN++LD +K+
Sbjct: 452 QFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKI 511

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LE+  F  R ++  VL   +  S  K + L   ++D VP  V GD  R RQI+ 
Sbjct: 512 EAGKLELESVPFDIRSILDDVLSLFSEESRNKSIELAVFVSDKVPEIVKGDSGRFRQIII 571

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + +K+++        E  K +S+   +    V EE      Q++ +
Sbjct: 572 NLVGNSVKFTEKGHIFVKVHLA-------EQSKDESEPKNALNGGVSEEMIVVSKQSSYN 624

Query: 551 Q-NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDE-DLEATVWIRCDVYDTGIGIPENAL 608
             +G+        +   KH       VS   S+ E D+ + V +   + DTGIGIP  A 
Sbjct: 625 TLSGYEAADGRNSWDSFKH------LVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQ 678

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
             +F  +MQ  +  +R YGGTG+GL+I K LVELM G++   S+ H GSTF F
Sbjct: 679 GRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWF 731



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 17/142 (11%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  +    +G  A+  +Q    +D   MD+ MP MDG 
Sbjct: 923  KILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGF 982

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E                  +   +N    +PI+AMTA+ +  + EEC  +G
Sbjct: 983  EATRQIRMMEKE----------------TKEKTNLEWHLPILAMTADVIHATYEECLKSG 1026

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + + F
Sbjct: 1027 MDGYVSKPFEEENLYKSVAKSF 1048


>gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
 gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
          Length = 1069

 Score =  162 bits (411), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 115/325 (35%), Positives = 157/325 (48%), Gaps = 69/325 (21%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I  +K  E EL +     E   RAK + +A MSHEIR+P+ GV+ MAE+L +T L  EQ
Sbjct: 304 DITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDTPLTPEQ 363

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
           R+    + SSG+ +L ++NDILD SK+E+G + LE   F   + V+ V+   A     K 
Sbjct: 364 REYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLAPRAHAKG 423

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLK 523
           L L   I   VP  + GD  R+RQ+LTNLI NAIKFT EG+V + + +            
Sbjct: 424 LELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEGEVVVSVSL------------ 471

Query: 524 QKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMD 583
                        KEEK  P  +   +                                 
Sbjct: 472 ------------SKEEKSAPAGERGGE--------------------------------- 486

Query: 584 EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
                 + +R +V D+GIGI E     LF  + Q  A   R+YGGTGLGLAI +QLVE+M
Sbjct: 487 ------IELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAISRQLVEMM 540

Query: 644 GGRLTVTSKVHCGSTF----TFILP 664
           GG + + S    GSTF     F+LP
Sbjct: 541 GGEIGLKSSPKEGSTFHFSARFVLP 565



 Score =  102 bits (255), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 83/161 (51%), Gaps = 38/161 (23%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV------------------- 899
            +P ILL EDN +N  VA SM+K+LG+ +++  NG EA+  +                   
Sbjct: 764  RPLILLAEDNPVNQQVAASMLKKLGYRVELAQNGEEALKKLFPPPSSPPSSSGREEGGGS 823

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
              + Y  +LMD+ MP MDGL+ATR IRS E+ G                        R P
Sbjct: 824  PKKKYAAVLMDIQMPKMDGLEATRRIRSKEEEGVL-------------------RLPRTP 864

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            IIAM+A+A+ E  E     GMD ++SKPV  ++LKE LE++
Sbjct: 865  IIAMSAHAMQEDRERALKAGMDHYISKPVKKEQLKEALERF 905


>gi|403528403|ref|YP_006663290.1| hybrid signal transduction histidine kinase J [Arthrobacter sp.
            Rue61a]
 gi|403230830|gb|AFR30252.1| hybrid signal transduction histidine kinase J [Arthrobacter sp.
            Rue61a]
          Length = 1153

 Score =  162 bits (411), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 131/429 (30%), Positives = 195/429 (45%), Gaps = 86/429 (20%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R +V DTGIGI       LF  + Q  A   R+YGGTGLGLAI ++L E+MGG++ + S
Sbjct: 636  LRFEVRDTGIGISAENHQRLFESFAQADASTTRRYGGTGLGLAISRRLTEVMGGKIGLDS 695

Query: 652  KVHCGSTFTFILPYQVSPIEENSDD-PDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFS 710
            +   GS F F L   + P    ++  P  L+    +  V DD                  
Sbjct: 696  EPGVGSRFWFDLELPLGPAATETESLPATLA--GRRVLVVDD------------------ 735

Query: 711  SNGTSR--------SKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVA 762
             N T+R        S  ++P S+  A++      +  S S P +        + D C   
Sbjct: 736  -NATNRLVLDTQLASWGMVPVSVADAASALDEYRAAASSSHPYD------IAVVDMCM-- 786

Query: 763  EVAETLSEPES-SFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQT 821
                    P++     +   +NE+  S G    +  TS  Q   ++ TS     RE +  
Sbjct: 787  --------PDTDGLQLARNIKNESNGSGGPGI-ILLTSTMQVERSDLTS--AGIREYL-- 833

Query: 822  SKTNEPQKICEMQEKPDRI-----SQSPSSSSAEVPETKPKPKP---KILLVEDNKINVM 873
                +P +  E+  +  R+     + +PS+ +   P     P P   K+L+ EDN++N +
Sbjct: 834  ---TKPVRSSELYNRLLRVLATKTTGAPSAPAINHPVETADPVPRLGKLLVAEDNEVNQL 890

Query: 874  VAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGN 933
            VA+ M  +LG+ + +V++G +AV A     Y  +LMD  MPVMDG  AT+ IR+      
Sbjct: 891  VARGMANRLGYEVHIVDDGEQAVSAALSGTYAAVLMDCHMPVMDGFDATKAIRA------ 944

Query: 934  WDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKL 993
                              + H  RIPIIAMTA AL E  E CFA GMD ++SKPV   KL
Sbjct: 945  -----------------RNGHSARIPIIAMTAGALDEDRERCFAAGMDDYISKPVDLAKL 987

Query: 994  KECLEQYFP 1002
             E L ++ P
Sbjct: 988  AEVLARWVP 996



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 340 MAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNT 398
           +A +  +I  +KA E EL        E  R K + LATMSHEIR+PL  V+ +  ++ +T
Sbjct: 447 VATISRDITERKAAEKELLAAREAALEASRLKSEFLATMSHEIRTPLNAVIGLTSLMMDT 506

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
            L   QRQ    +  +G+++L LINDILD SK+E+G + L+   F PRE+V+ V      
Sbjct: 507 PLSEGQRQYAQGVKGAGEVLLTLINDILDFSKLEAGKVDLDINAFDPRELVEEVAGLVVE 566

Query: 459 SLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPF 517
           + Q K L L      DVP  ++GD  RIRQIL NL SNA+KFTP+G+V +++ V+   P 
Sbjct: 567 AAQGKDLELISYCHPDVPARLMGDAGRIRQILLNLSSNAVKFTPDGEVEVQVSVLAHDPN 626

Query: 518 AKEGLKQKSKAYQ--SATDAVKEEKHQPKSQTASDQNGFHDKKHG 560
                 + S  ++       +  E HQ   ++ +  +    +++G
Sbjct: 627 LAHDPNKASLRFEVRDTGIGISAENHQRLFESFAQADASTTRRYG 671


>gi|373458202|ref|ZP_09549969.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
           DSM 13497]
 gi|371719866|gb|EHO41637.1| integral membrane sensor hybrid histidine kinase [Caldithrix abyssi
           DSM 13497]
          Length = 748

 Score =  162 bits (410), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 170/669 (25%), Positives = 281/669 (42%), Gaps = 159/669 (23%)

Query: 353 KETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVM 411
           K  EL K    TE   +AK + LA MSHEIR+P+ G++ M E+   T+L  EQR  L V+
Sbjct: 210 KNIELKKAKEETERANKAKDEFLANMSHEIRTPMNGILGMTELALETRLTAEQRDYLNVV 269

Query: 412 ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIA 471
            SS + +L +INDILD SK       +EA K    E+                       
Sbjct: 270 KSSAEALLAIINDILDFSK-------IEAGKLDLEEI----------------------- 299

Query: 472 DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEG--LKQKSKAY 529
           D    ++IGD+++   I +N          E K+ +  ++ P+ P   +G  ++ +    
Sbjct: 300 DFNLYDMIGDMIKPLAIKSN----------EKKIELAYFIDPDVPIFIKGDPIRLRQILI 349

Query: 530 QSATDAVK-EEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEA 588
               +A+K  EK Q   +                                     E L+ 
Sbjct: 350 NLLGNAIKFTEKGQVVLEVLKA---------------------------------ERLDD 376

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL- 647
            + ++  V+DTGIGIP      +F  ++Q      RK+GGTGLGLAIC +LV +M G++ 
Sbjct: 377 KIILKFGVHDTGIGIPREVQDKIFESFVQADTSITRKFGGTGLGLAICMRLVRMMNGKIW 436

Query: 648 -----TVTSKVHCGSTFTFILPYQVSPIEENSDDPDDL--SDMADQDSVTDD---VTAGF 697
                T  S+   G   +F    Q+   E     P  +   ++   + +  D   +   +
Sbjct: 437 LESPSTYPSRKKGGPGTSFFFTAQLHEAEHRETTPYRILQKNLKGLNVLLIDDNPINRSY 496

Query: 698 FQ-------FQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQK 750
           FQ        Q  T  S F +    ++ +     I  A   +++GF  ++      N +K
Sbjct: 497 FQKILEKNKLQVTTAESAFKALEILKTNQRFDLIITDAQMPEMDGFELSTQIRALKNYKK 556

Query: 751 ETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTS 810
               L  +  +   +E   +   + ++ P+P   T+  +  Q  +               
Sbjct: 557 VPIILLTSSGMRGDSERCKQIGIN-AYLPKPVKLTDFLKALQVTL--------------- 600

Query: 811 HSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKI 870
                           PQ   E + +P  ++Q        V E  P  +  IL+ EDN +
Sbjct: 601 --------------GLPQ---EEEVQPSLVTQY------TVREVLP--RLHILVAEDNPV 635

Query: 871 NVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFED 930
           N  +A  ++++ G+  D+  NG+E +  ++  +YDLILMDV MP MDGL+AT+ IR  E+
Sbjct: 636 NQKLAIRLLEKNGYYADIAKNGLEVLEKLKKNHYDLILMDVQMPEMDGLQATQKIRELEN 695

Query: 931 TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTF 990
                              G S+    IPIIA+TA+A+ +  + C    MD +VSKP+  
Sbjct: 696 -------------------GKSH----IPIIALTAHAMKKDIDMCLNAAMDGYVSKPIRK 732

Query: 991 QKLKECLEQ 999
           ++L + +E+
Sbjct: 733 EELFKEIER 741


>gi|13359157|dbj|BAB33311.1| cytokinin receptor CRE1b [Arabidopsis thaliana]
          Length = 1080

 Score =  162 bits (410), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 160/293 (54%), Gaps = 16/293 (5%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T+L   QR         G  ++ LIN++LD +K+
Sbjct: 475 QFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKI 534

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LE+  F  R ++  VL   +  S  K + L   ++D VP  V GD  R RQI+ 
Sbjct: 535 EAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIII 594

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + +K+++        E  K +S+   +    V EE      Q++ +
Sbjct: 595 NLVGNSVKFTEKGHIFVKVHLA-------EQSKDESEPKNALNGGVSEEMIVVSKQSSYN 647

Query: 551 Q-NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDE-DLEATVWIRCDVYDTGIGIPENAL 608
             +G+        +   KH       VS   S+ E D+ + V +   + DTGIGIP  A 
Sbjct: 648 TLSGYEAADGRNSWDSFKH------LVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQ 701

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
             +F  +MQ  +  +R YGGTG+GL+I K LVELM G++   S+ H GSTF F
Sbjct: 702 GRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWF 754



 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 17/142 (11%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  +    +G  A+  +Q    +D   MD+ MP MDG 
Sbjct: 946  KILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGF 1005

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E     +A  +  +E              +PI+AMTA+ +  + EEC  +G
Sbjct: 1006 EATRQIRMMEK----EAKEKTNLEW------------HLPILAMTADVIHATYEECLKSG 1049

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + + F
Sbjct: 1050 MDGYVSKPFEEENLYKSVAKSF 1071


>gi|113911568|gb|ABI48270.1| histidine kinase 2 [Lotus japonicus]
          Length = 996

 Score =  162 bits (410), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 99/295 (33%), Positives = 160/295 (54%), Gaps = 3/295 (1%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T+L   QR       + G  ++ LIN++LD +K+
Sbjct: 377 QFLATVSHEIRTPMNGILGMMALLLDTELSSTQRDYAQTAQACGKALITLINEVLDRAKI 436

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K L L   ++D VP  ++GD  R RQI+T
Sbjct: 437 EAGKLELEAVPFDLRSILDDVLSLFSEKSRHKSLELAVFVSDKVPDILMGDPGRFRQIIT 496

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + +K+++         G  +        +D V         +T S 
Sbjct: 497 NLVGNSVKFTEQGHIFVKVHLEDNINPVMNG--KHETILNGESDEVFHLSGDCHFKTLSG 554

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                ++   E ++    +++     S   +   +    V +R  V DTG GIP +A  T
Sbjct: 555 CEAVDEQNSWENFKHLIANEERYFDCSSKMAATSESSEQVKLRVCVEDTGTGIPFSAQDT 614

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
           +F  ++Q  +  +R YGGTG+GL+I K LVELMGG++  TS+   GSTF+F   +
Sbjct: 615 IFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFTSRPQVGSTFSFTAAF 669



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 13/145 (8%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-YDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  +  V +G  A+  +Q  + +D   MD+ MP MDG 
Sbjct: 853  KILVVDDNVVNRRVAAGALKKFGADVKCVESGKAALEMLQLPHCFDACFMDIQMPEMDGF 912

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK---RIPIIAMTANALSESAEECF 976
            +AT  IR  E   N         EQ     G  N  K    +PI+AMTA+ +  + ++C 
Sbjct: 913  EATSKIRMMERKAN---------EQVNGELGEGNTRKSEWHVPILAMTADVIHATYDKCL 963

Query: 977  ANGMDSFVSKPVTFQKLKECLEQYF 1001
              GMD +VSKP   QKL + + ++F
Sbjct: 964  KCGMDGYVSKPFEEQKLYQEVAKFF 988


>gi|13359155|dbj|BAB33310.1| cytokinin receptor CRE1a [Arabidopsis thaliana]
          Length = 1057

 Score =  162 bits (410), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 160/293 (54%), Gaps = 16/293 (5%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T+L   QR         G  ++ LIN++LD +K+
Sbjct: 452 QFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKI 511

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LE+  F  R ++  VL   +  S  K + L   ++D VP  V GD  R RQI+ 
Sbjct: 512 EAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIII 571

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + +K+++        E  K +S+   +    V EE      Q++ +
Sbjct: 572 NLVGNSVKFTEKGHIFVKVHLA-------EQSKDESEPKNALNGGVSEEMIVVSKQSSYN 624

Query: 551 Q-NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDE-DLEATVWIRCDVYDTGIGIPENAL 608
             +G+        +   KH       VS   S+ E D+ + V +   + DTGIGIP  A 
Sbjct: 625 TLSGYEAADGRNSWDSFKH------LVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLVAQ 678

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
             +F  +MQ  +  +R YGGTG+GL+I K LVELM G++   S+ H GSTF F
Sbjct: 679 GRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQINFISRPHIGSTFWF 731



 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 17/142 (11%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  +    +G  A+  +Q    +D   MD+ MP MDG 
Sbjct: 923  KILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHTFDACFMDIQMPQMDGF 982

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E     +A  +  +E              +PI+AMTA+ +  + EEC  +G
Sbjct: 983  EATRQIRMMEK----EAKEKTNLEW------------HLPILAMTADVIHATYEECLKSG 1026

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + + F
Sbjct: 1027 MDGYVSKPFEEENLYKSVAKSF 1048


>gi|413951477|gb|AFW84126.1| putative histidine kinase family protein [Zea mays]
          Length = 1007

 Score =  162 bits (410), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 105/295 (35%), Positives = 158/295 (53%), Gaps = 31/295 (10%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T LD  Q+  +    +SG  ++ LIN++LD +K+
Sbjct: 425 QFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKI 484

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R V   +L       Q K L L   ++D VP  +IGD  RIRQI+T
Sbjct: 485 ESGKLELEAVPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVPQALIGDPGRIRQIIT 544

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT +G + + ++VV E                   + ++ E     + T S 
Sbjct: 545 NLVGNSIKFTEKGHIYLTVHVVEE-----------------IMNCLEVETGTQSANTLSG 587

Query: 551 QNGFHDKKHGEGYQDHKHDDD----PGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606
               + K+  E ++    + +    P  P++           ++ +   V DTG+GIP +
Sbjct: 588 YPVANRKRSWENFRVFSRELNSSEMPFAPIA---------SDSISLIISVEDTGVGIPFD 638

Query: 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           A   +F  +MQV    AR +GGTG+GL+I K LV LM G +   SK   GSTFTF
Sbjct: 639 AQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMRGEIGFASKPQVGSTFTF 693



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 82/144 (56%), Gaps = 6/144 (4%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMD 917
            K +IL+V+DN +N+ VA   +K+ G  +   ++G +A+  ++   ++D   MD+ MP MD
Sbjct: 862  KKRILVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITQLKPPHSFDACFMDIQMPEMD 921

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +AT+ IR  E   + +   E G  +A P       + R PI+AMTA+ +  + E+C  
Sbjct: 922  GFEATKRIRVMER--DLNEQIERG--EAPPECAGLRQW-RTPILAMTADVIQATHEQCLK 976

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
            + MD +VSKP   ++L   + ++F
Sbjct: 977  SEMDGYVSKPFEGEQLYREVARFF 1000


>gi|384251337|gb|EIE24815.1| hypothetical protein COCSUDRAFT_46955 [Coccomyxa subellipsoidea
           C-169]
          Length = 1327

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 186/390 (47%), Gaps = 77/390 (19%)

Query: 281 REVLEKGLPAKREITFETELF---GSKTF-LIYVEPVFSKSGETIGVNYMGMDVTDQVRK 336
           RE LE+    KRE++ E   +   G K + L+ + PV + +G  +    +  D+T+ +R+
Sbjct: 439 REALEQ----KREVSLEILNYKKNGDKFWNLLSMMPVCNAAGAVVSFIGVQSDITELIRR 494

Query: 337 REKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEIL 395
                         K  E EL +     E    AK M LA MSHEIR+PL G++++A++L
Sbjct: 495 --------------KHAERELQQAKVAAETATEAKSMFLANMSHEIRTPLNGMIAVAQLL 540

Query: 396 SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT 455
            +T L  EQR+L   ++ SGD +L ++ DILD SK++   M LE+A    R+V+   ++ 
Sbjct: 541 LSTNLTPEQRELAETILDSGDTLLTILGDILDFSKIDHNSMVLESAPVSLRDVISSTVEM 600

Query: 456 AAASLQKILMLEGDIADDVPIE--VIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
            AA   K  +      DD  +   V+GD +RIRQ+L N+++NA+KFT             
Sbjct: 601 VAADATKKGLDLAYTMDDALLRRTVLGDAIRIRQVLANILANAVKFT------------- 647

Query: 514 EPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPG 573
                     Q+ +   +AT              A           G G       D PG
Sbjct: 648 ----------QRGEVVVTAT-------------CADASAALPSAAAGRG------GDGPG 678

Query: 574 TPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGL 633
             V  G  +         +   + DTGIGI E+++  LF+ + Q S   +RKYGGTGLGL
Sbjct: 679 D-VCAGRQL---------VHVAIRDTGIGISEDSMKKLFQCFRQGSESMSRKYGGTGLGL 728

Query: 634 AICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
            I K+L ELMGG   V S V  GS F F +
Sbjct: 729 VISKRLTELMGGTTWVESTVGKGSIFHFTM 758



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 837  PDRISQSPSSSSAEVPETKPKPKP--KILLVEDNKINVMVAKSMMKQLG--HSIDVVNNG 892
            P R++   S ++A   E  P P    ++L+ EDN +N  V   +++++     + V NNG
Sbjct: 1156 PPRLTGGGSGAAAAATERSPSPGGALRVLVAEDNLVNQKVLLKVLQRVTPESKVFVANNG 1215

Query: 893  VEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIR 926
             EA+  ++   YD++LMDV MP++DGL+A+R IR
Sbjct: 1216 QEALQEMEKNVYDIVLMDVHMPIIDGLEASRRIR 1249


>gi|359485817|ref|XP_002269977.2| PREDICTED: histidine kinase 2-like [Vitis vinifera]
          Length = 1272

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 166/300 (55%), Gaps = 26/300 (8%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L ++ LD  Q+       +SG  ++ LIN++LD +K+
Sbjct: 671 QFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKI 730

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R  + +VL   +  S +K + L   I+D VP  VIGD  R RQI+T
Sbjct: 731 ESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIIT 790

Query: 491 NLISNAIKFTPE-GKVGIKLY----VVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
           NL+ N+IKFT + G + + ++    VV  P    E L+Q                H   +
Sbjct: 791 NLVGNSIKFTHDKGHIFVSVHLADEVVGPPDLRDEVLRQSLNIV-----------HDSSN 839

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
            + +  +GF      + ++  K        +S  +SM+E   + + +   V DTG+GIP 
Sbjct: 840 NSYNTLSGFPVVNRWKSWEKFKK-------LSCTDSMEET--SIIKLLVTVEDTGVGIPS 890

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
            A   +F  +MQ  +  +R YGGTG+GL+I K+LV+LMGG +   S+   GSTF+F + +
Sbjct: 891 EAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAF 950



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 7/143 (4%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA+  +K+ G  +  V++G  A+  ++   N+D   MD+ MP MDG 
Sbjct: 1132 RILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQMPEMDGF 1191

Query: 920  KATRLIRSFEDTGNWDA-AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            +AT+ IR  E   N    + E  IE       ++  +   PI+AMTA+ +  + EEC   
Sbjct: 1192 RATQEIRRMESKVNERIKSGEVSIEMF-----ANVAYWHTPILAMTADVIQANNEECMKC 1246

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GMD +V+KP    +L   +  +F
Sbjct: 1247 GMDGYVAKPFEEDQLYSAVAHFF 1269


>gi|288941472|ref|YP_003443712.1| histidine kinase [Allochromatium vinosum DSM 180]
 gi|288896844|gb|ADC62680.1| histidine kinase [Allochromatium vinosum DSM 180]
          Length = 547

 Score =  162 bits (409), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/352 (32%), Positives = 171/352 (48%), Gaps = 66/352 (18%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           E  A+L+ ++ + +  E EL +  H  E   RAK + LA MSHEIR+PL  ++ + E+L+
Sbjct: 113 ELSARLQTQVRLAR-TEAELARARHEAESANRAKSEFLANMSHEIRTPLNAIIGIGELLA 171

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP----REVVKHV 452
            T+LD  QR+ + ++ +SG+ +L LI DILD SK+E+G ++L+A +F P    RE V  V
Sbjct: 172 KTRLDATQREYVHIIETSGNAMLSLIEDILDYSKIEAGRLELDAVRFAPAVCIREAVGLV 231

Query: 453 LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
              A    +K L ++  +   +P   +GD  R RQI  NL+ NA+KFT +G++G+ L   
Sbjct: 232 QLKAR---EKGLRIDVAVDPGIPGYFLGDSHRFRQIAINLLGNAVKFTEQGRIGVSL--- 285

Query: 513 PEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDP 572
                             +    V E+  Q ++ + SD                      
Sbjct: 286 ------------------NGHSIVPEDAGQDRTMSQSD---------------------- 305

Query: 573 GTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLG 632
                         EA   +   V DTGIGIP +    +F K+ QV A   R+YGGTGLG
Sbjct: 306 --------------EAWYQLVLTVEDTGIGIPPDRQSHIFAKFSQVDASTTRRYGGTGLG 351

Query: 633 LAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMA 684
           LAIC+QL  L+GG + V S    G    F     +       + P+D + +A
Sbjct: 352 LAICRQLARLLGGDIEVESAGIPGQGSRFRCTVTMRACRRQHEAPEDQTRVA 403



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 23/145 (15%)

Query: 855 KPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMP 914
           +P    ++L+ EDN  N+++ + +++ +G S D  +NG+EAV A +   YD+ILMDV MP
Sbjct: 416 EPLSTLRVLIAEDNPGNLILMRKLLQSMGVSADFAHNGLEAVEAARQVAYDVILMDVQMP 475

Query: 915 VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE 974
            +DG++ATR IR F+                 P        + + I+A+TANA  E    
Sbjct: 476 ELDGIEATRRIRRFQ-----------------PDR------QPLQIVALTANATEEDRLA 512

Query: 975 CFANGMDSFVSKPVTFQKLKECLEQ 999
           CF  GM+ F++KPV  Q+L E LE 
Sbjct: 513 CFEAGMNGFITKPVRMQRLTEVLEH 537


>gi|376007484|ref|ZP_09784679.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
 gi|375324120|emb|CCE20432.1| Multi-sensor hybrid histidine kinase [Arthrospira sp. PCC 8005]
          Length = 1493

 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 167/332 (50%), Gaps = 63/332 (18%)

Query: 329 DVTDQVRKREKMAKLRE-EIAVQKAKETE---LNKTIHITEETMRAK-QMLATMSHEIRS 383
           DV  QV      AKL E E+   +A E +   L +     E   RAK + LATMSHEIR+
Sbjct: 686 DVASQVGITIAQAKLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEIRT 745

Query: 384 PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
           P+  V+ M  +L + +L  EQR  +  + +SGD +L +INDILD SK+ESG ++LE   F
Sbjct: 746 PMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPF 805

Query: 444 RPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
           + R  ++  L+  +  + +K L L   I    P  ++GDV R+RQ+L NL+SNAIKFT E
Sbjct: 806 KLRNCLEECLELLSGRAAEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSE 865

Query: 503 GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEG 562
           G+V +                           AVK                     H + 
Sbjct: 866 GEVIL---------------------------AVK-------------------ATHPDA 879

Query: 563 YQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADH 622
            +D K  DD     SH             ++ +V DTGIGIP + +  LF+ + QV A  
Sbjct: 880 KKDVKKSDDSDFTESH-----------YVLQFEVRDTGIGIPPDRIDRLFKAFSQVDAST 928

Query: 623 ARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
            R+YGGTGLGLAI ++L +LM G++ V S V+
Sbjct: 929 TREYGGTGLGLAISQRLSQLMNGKMWVASWVN 960



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 87/168 (51%), Gaps = 20/168 (11%)

Query: 835  EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            EK   I  + S     +P+  P    +ILL EDN  N  VA  ++++LG+  D+  NG+E
Sbjct: 1156 EKHYHIKNAESGYDPAIPQ--PHANLRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLE 1213

Query: 895  AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
             + A+  Q YD+ILMDV MP MDGL+A++ I                   A  S GS   
Sbjct: 1214 VLDALNRQQYDVILMDVQMPEMDGLEASKHI------------------CAAYSDGSDMG 1255

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             ++  IIAMTANA+    E C   GMD +++KPV  + L E L +  P
Sbjct: 1256 PRKPRIIAMTANAMQGDREMCLNAGMDDYITKPVRREALAEALAKCHP 1303


>gi|400288800|ref|ZP_10790832.1| GAF sensor hybrid histidine kinase [Psychrobacter sp. PAMC 21119]
          Length = 609

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/329 (34%), Positives = 173/329 (52%), Gaps = 37/329 (11%)

Query: 339 KMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSN 397
           K  KL  + A+  A   +L     + +     K   LA MSHEIR+P+ G++ M E+LS 
Sbjct: 158 KQEKLLAQFAMMAADALQLQDKQRVAKHANEMKSDFLANMSHEIRTPMNGIIGMVEMLSE 217

Query: 398 TKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-A 456
           TKL +EQ++ +  +  S + +L +IN ILDLSKVESG M ++A       +   V+   A
Sbjct: 218 TKLSQEQQEYVDNIKVSNEHLLAIINGILDLSKVESGKMTIDAIPMNLSTLCNEVVSLFA 277

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKLYVVPEP 515
             + Q+ L+L+    + +   V GD +R++QI+ NL++NAIKFT EG +V I +  VP  
Sbjct: 278 IKARQRGLILDYHYMESLSPYVQGDPVRLKQIMVNLVNNAIKFTREGGRVSIDVKHVPNC 337

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
            +    +  KSK  +S  D   E  +    +T S                       G  
Sbjct: 338 CY----INDKSKNDKSRND---ESDNALTDETIS-----------------------GDS 367

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +   ++  E++  T++I  +V DTG+GI   ++  +F  Y Q      R YGGTGLGL++
Sbjct: 368 IIEESTSQENM--TLYI--EVTDTGVGIKPESVDAIFDAYNQADKSTHRLYGGTGLGLSV 423

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILP 664
           CK LV+LMGG + V S V  G+TFT +LP
Sbjct: 424 CKSLVDLMGGCINVDSVVGVGTTFTVLLP 452



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 26/142 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV--HAVQCQNYDLILMDVCMPVMDGL 919
            ILLVED+ +N  +AK  +   GH++  V +G +A+   A+  + YDLILMD  MP+MDG+
Sbjct: 483  ILLVEDDSVNATIAKKALNNSGHTVTHVTDGQQAIETFALYPERYDLILMDHHMPIMDGV 542

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +AT  +    D             Q +P           PIIA+TANA+    E+    G
Sbjct: 543  QATIKLHELYD------------PQVLP-----------PIIALTANAMDGEREKYLNVG 579

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            M  + +KP   ++L   L QY+
Sbjct: 580  MQDYCTKPFKQEQLN-ALVQYW 600


>gi|89892466|gb|ABD79028.1| histidine kinase SHK278 [Striga asiatica]
          Length = 1002

 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/292 (35%), Positives = 157/292 (53%), Gaps = 33/292 (11%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+LD  Q+  +     SG  ++ LIN++LD +K+
Sbjct: 438 QFLATVSHEIRTPMNGVLGMLQMLMDTRLDETQQDYVRTARESGKALVSLINEVLDQAKI 497

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R ++  VL   +   Q K + L   ++  VP  +IGD  R RQI+T
Sbjct: 498 ESGKLELEAVSFDLRAILDDVLSLFSGKSQDKKVELAVYVSSKVPSTLIGDPGRFRQIVT 557

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT +G + + +Y+V                         EE  + +++T S 
Sbjct: 558 NLVGNSIKFTDKGHIFVTVYLV-------------------------EEVMETEAETGSS 592

Query: 551 QNGFHDKKHGEGYQDHK-HDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALP 609
            +G         +   +    D  TP++ G+S D+     V +   V DTG GIP  A  
Sbjct: 593 LSGLPVVDRRRSWSRFRVFSQDNNTPLA-GSSPDQ-----VNVMVSVEDTGQGIPVEAQS 646

Query: 610 TLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
            +F  +MQV     R +GGTG+GL+I K LV+LM G + + S    GSTFTF
Sbjct: 647 RVFNPFMQVGPSITRTHGGTGIGLSISKCLVQLMKGEIGLASTPQVGSTFTF 698



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 82/145 (56%), Gaps = 11/145 (7%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-YDLILMDVCMPVMDGL 919
            +IL+V+DN++N+ VA   +K+ G  +     G EA+  +   + +    MD+ MP MDG 
Sbjct: 854  RILVVDDNRVNLRVAAGCLKKYGADVVHAERGKEAISLLTPPHLFHACFMDIQMPEMDGF 913

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQ---AMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            +ATR IR  E   N       GIE    ++ S G+ +++  +PI+AMTA+ +  ++EEC 
Sbjct: 914  EATRRIRDIESGIN------KGIEDGRLSLESYGNVSNW-HVPILAMTADVIQATSEECS 966

Query: 977  ANGMDSFVSKPVTFQKLKECLEQYF 1001
              GMD +VSKP    +L   + ++F
Sbjct: 967  KCGMDGYVSKPFEADQLYREVSRFF 991


>gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1493

 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 166/332 (50%), Gaps = 63/332 (18%)

Query: 329 DVTDQVRKREKMAKLRE-EIAVQKAKETE---LNKTIHITEETMRAK-QMLATMSHEIRS 383
           DV  QV      AKL E E+   +A E +   L +     E   RAK + LATMSHEIR+
Sbjct: 686 DVASQVGITIAQAKLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEIRT 745

Query: 384 PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
           P+  V+ M  +L + +L  EQR  +  + +SGD +L +INDILD SK+ESG ++LE   F
Sbjct: 746 PMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPF 805

Query: 444 RPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
           + R  ++  L+  +    +K L L   I    P  ++GDV R+RQ+L NL+SNAIKFT E
Sbjct: 806 KLRNCLEECLELLSGRADEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSE 865

Query: 503 GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEG 562
           G+V +                           AVK                     H + 
Sbjct: 866 GEVIL---------------------------AVK-------------------ATHPDA 879

Query: 563 YQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADH 622
            +D K  DD     SH             ++ +V DTGIGIP + +  LF+ + QV A  
Sbjct: 880 KKDVKKSDDSDFTESH-----------YVLQFEVRDTGIGIPPDRIDRLFKAFSQVDAST 928

Query: 623 ARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
            R+YGGTGLGLAI ++L +LM G++ V S V+
Sbjct: 929 TREYGGTGLGLAISQRLSQLMNGKMWVASWVN 960



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 87/168 (51%), Gaps = 20/168 (11%)

Query: 835  EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            EK   I  + S     +P+  P    +ILL EDN  N  VA  ++++LG+  D+  NG+E
Sbjct: 1156 EKHYHIKNAESGYDPAIPQ--PHANLRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLE 1213

Query: 895  AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
             + A+  Q YD+ILMDV MP MDGL+A++ I                   A  S GS   
Sbjct: 1214 VLDALNRQQYDVILMDVQMPEMDGLEASKHI------------------CAAYSDGSDMG 1255

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             ++  IIAMTANA+    E C   GMD +++KPV  + L E L +  P
Sbjct: 1256 PRKPRIIAMTANAMQGDREMCLNAGMDDYITKPVRREALAEALAKCHP 1303


>gi|409992461|ref|ZP_11275649.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
 gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
 gi|409936686|gb|EKN78162.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 1494

 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/332 (35%), Positives = 167/332 (50%), Gaps = 63/332 (18%)

Query: 329 DVTDQVRKREKMAKLRE-EIAVQKAKETE---LNKTIHITEETMRAK-QMLATMSHEIRS 383
           DV  QV      AKL E E+   +A E +   L +     E   RAK + LATMSHEIR+
Sbjct: 686 DVASQVGITIAQAKLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEIRT 745

Query: 384 PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
           P+  V+ M  +L + +L  EQR  +  + +SGD +L +INDILD SK+ESG ++LE   F
Sbjct: 746 PMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPF 805

Query: 444 RPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
           + R  ++  L+  +  + +K L L   I    P  ++GDV R+RQ+L NL+SNAIKFT E
Sbjct: 806 KLRNCLEECLELLSGRAAEKGLELAYIIDPSTPKTILGDVTRLRQVLVNLVSNAIKFTSE 865

Query: 503 GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEG 562
           G+V +                           AVK                     H + 
Sbjct: 866 GEVIL---------------------------AVK-------------------ATHPDA 879

Query: 563 YQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADH 622
            +D K  DD     SH             ++ +V DTGIGIP + +  LF+ + QV A  
Sbjct: 880 KKDVKKFDDSDFTESH-----------YVLQFEVRDTGIGIPPDRIDRLFKAFSQVDAST 928

Query: 623 ARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
            R+YGGTGLGLAI ++L +LM G++ V S V+
Sbjct: 929 TREYGGTGLGLAISQRLSQLMNGKMWVASWVN 960



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 86/168 (51%), Gaps = 20/168 (11%)

Query: 835  EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            EK   I  + S     +P+  P    +ILL EDN  N  VA  ++++LG+  D+  NG+E
Sbjct: 1156 EKHYHIKNAESGYDPAIPQ--PHANLRILLAEDNVTNQKVAIKLLERLGYRADIAGNGLE 1213

Query: 895  AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
             + A+  Q YD+ILMDV MP MDGL+ ++ I                   A  S GS   
Sbjct: 1214 VLDALNRQQYDVILMDVQMPEMDGLETSKHI------------------CAAYSDGSDMG 1255

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             ++  IIAMTANA+    E C   GMD +++KPV  + L E L +  P
Sbjct: 1256 PRKPRIIAMTANAMQGDREMCLNAGMDDYITKPVRREALAEALAKCHP 1303


>gi|334117454|ref|ZP_08491545.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
 gi|333460563|gb|EGK89171.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
          Length = 1830

 Score =  160 bits (405), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 174/336 (51%), Gaps = 49/336 (14%)

Query: 329  DVTDQVRKREKMAKLRE-EIAVQK--AKETE-LNKTIHITEETMRAK-QMLATMSHEIRS 383
            DV  QV      A+L E E+  Q+  A++ E L++     E   RAK + LATMSHEIR+
Sbjct: 996  DVAAQVGITLAQAQLLETEVQRQRQLAEQNEALDQARQAAEVANRAKSEFLATMSHEIRT 1055

Query: 384  PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
            P+  V+ M  +L + +L  EQR  +  + +SGD +L +INDILD SK+ESG + LE + F
Sbjct: 1056 PMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLDLERSPF 1115

Query: 444  RPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
              +  ++  L+  A  + +K L L   I D VP  ++GDV R+RQIL NL+ NA+KFT  
Sbjct: 1116 ELQNCIEESLELLAPRASEKGLELAYFIDDSVPKNILGDVTRLRQILVNLLGNAVKFTES 1175

Query: 503  GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEG 562
            G++ +               + +  A  S+ D +     QP +              GE 
Sbjct: 1176 GEIVV----------CCTARQIEQVAANSSPDRINILAPQPLA-----------INQGEL 1214

Query: 563  YQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADH 622
             +  +++                      I+  V DTGIGIP + +  LF+ + QV A  
Sbjct: 1215 ARSRQYE----------------------IQFAVQDTGIGIPPDRMDRLFKAFSQVDAST 1252

Query: 623  ARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGST 658
             R YGGTGLGLAI ++L ++MGG + V S+V  GS+
Sbjct: 1253 TRHYGGTGLGLAISQRLSDMMGGTMWVVSQVTPGSS 1288



 Score = 97.8 bits (242), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 91/170 (53%), Gaps = 25/170 (14%)

Query: 833  MQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNG 892
            +Q  P  + Q  ++S+ +  +     + +ILL EDN +N  VA  ++ ++G+  D+  NG
Sbjct: 1518 VQRTPAVLRQVAANSAGQ--DAANSSQIRILLAEDNVVNQKVATHLLDRIGYRADIAANG 1575

Query: 893  VEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
            +E + A++ Q+YD++LMDV MP MDGL+ATR I        W A                
Sbjct: 1576 LEVLEALKRQSYDVVLMDVQMPNMDGLEATRRI-----CQEWPAN--------------- 1615

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
               K+  IIAMTANA+    E+C   GMD +++KPV  ++L   L +  P
Sbjct: 1616 ---KKPRIIAMTANAMQGDREKCLEAGMDDYITKPVRREELAIALSKCSP 1662


>gi|147789780|emb|CAN76309.1| hypothetical protein VITISV_028333 [Vitis vinifera]
          Length = 1400

 Score =  160 bits (405), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/300 (35%), Positives = 165/300 (55%), Gaps = 26/300 (8%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L ++ LD  Q+       +SG  ++ LIN++LD +K+
Sbjct: 710 QFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKI 769

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R  + +VL   +  S +K + L   I+D VP  VIGD  R RQI+T
Sbjct: 770 ESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIIT 829

Query: 491 NLISNAIKFTPE-GKVGIKLY----VVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
           NL+ N+IKFT + G + + ++    VV  P    E L+Q                H   +
Sbjct: 830 NLVGNSIKFTHDKGHIFVSVHLADEVVGPPDLRDEVLRQSLNIV-----------HDSSN 878

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
            + +  +GF      + ++  K        +   +SM+E   + + +   V DTG+GIP 
Sbjct: 879 NSYNTLSGFPVVNRWKSWEKFKK-------LXCTDSMEE--TSIIKLLVTVEDTGVGIPS 929

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
            A   +F  +MQ  +  +R YGGTG+GL+I K+LV+LMGG +   S+   GSTF+F + +
Sbjct: 930 EAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAF 989



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 7/143 (4%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA+  +K+ G  +  V++G  A+  ++   N+D   MD+ MP MDG 
Sbjct: 1171 RILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQMPEMDGF 1230

Query: 920  KATRLIRSFEDTGNWDA-AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            KAT+ IR  E   N    + E  IE       ++  +   PI+AMTA+ +  + EEC   
Sbjct: 1231 KATQEIRRMESKVNERIKSGEVSIEMF-----ANVAYWHTPILAMTADVIQANNEECMKC 1285

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GMD +V+KP    +L   +  +F
Sbjct: 1286 GMDGYVAKPFEEDQLYSAVAHFF 1308


>gi|428224217|ref|YP_007108314.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
 gi|427984118|gb|AFY65262.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
          Length = 957

 Score =  160 bits (404), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 163/337 (48%), Gaps = 71/337 (21%)

Query: 330 VTDQVRKREKMAKLREEIAVQKAKETELNKTI----HITEETMRAKQ-MLATMSHEIRSP 384
           + DQV      A++  +   Q+ + TE N  +    +I E    AK   LA MSHEIR+P
Sbjct: 274 IADQVGIALAQAQVLAQETRQRQEMTEKNAALEHARYIAEAANHAKSSFLAVMSHEIRTP 333

Query: 385 LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
           +  V+ M ++L +T L  +Q      + +SG+ +L +INDILD SK+ESG + ++   F 
Sbjct: 334 MNAVIGMTDLLLDTSLTPQQEDFAQTIRTSGEALLAIINDILDFSKIESGKLDIQNHPFD 393

Query: 445 PREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
            R  ++  L   A  + +K L L   I   VP E++GD +R+RQIL NL+ NA+KFT EG
Sbjct: 394 LRSCIESALDLLAPKAAEKQLELVYFIEPHVPTELVGDEVRLRQILVNLVGNAVKFTAEG 453

Query: 504 KVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGY 563
            V I                           AV      P SQ +S              
Sbjct: 454 FVAI---------------------------AVTGRSLTPDSQASS-------------- 472

Query: 564 QDHKHDDDPGTPVSHGNSMDEDLEATVW-IRCDVYDTGIGIPENALPTLFRKYMQVSADH 622
                                  EA ++ IR  V DTGIGIP + L  LFR + QV +  
Sbjct: 473 -----------------------EAPLYTIRFTVQDTGIGIPSDRLDRLFRPFSQVDSFT 509

Query: 623 ARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTF 659
            R+YGGTGLGL I ++L E+MGGR+ V S+V  GSTF
Sbjct: 510 GRQYGGTGLGLVISQRLSEMMGGRIWVDSEVEQGSTF 546



 Score = 97.8 bits (242), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 80/138 (57%), Gaps = 23/138 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +ILL EDN +N  VA  ++K+LG+S DV +NG EA+ ++Q + YDL+LMD+ MP MDGL 
Sbjct: 716 RILLAEDNLVNQKVALHLLKRLGYSADVAHNGREALESLQRRAYDLVLMDIQMPEMDGLS 775

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR I +       D  A+                +R  I+A+TANA+    E+C A GM
Sbjct: 776 ATRRICA-------DFPAQ----------------ERPRIVAVTANAMQGDREQCLAAGM 812

Query: 981 DSFVSKPVTFQKLKECLE 998
           D + SKP+   +L   L+
Sbjct: 813 DDYTSKPLRIAELMRVLQ 830


>gi|413933249|gb|AFW67800.1| putative histidine kinase family protein [Zea mays]
          Length = 806

 Score =  159 bits (403), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 164/294 (55%), Gaps = 13/294 (4%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T L   QR         G  ++ LIN++LD +K+
Sbjct: 196 QFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKI 255

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+  + LE+  F  R ++  V+   ++ S +K + L+  +++ VP  ++GD  R RQI+T
Sbjct: 256 EARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERVPEILLGDPGRFRQIIT 315

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEG-LKQKSKAYQSATDAVKEEKHQPKSQTAS 549
           NL+ N+IKFT  G + +++++      A E  ++  +      TD   E+     S + +
Sbjct: 316 NLVGNSIKFTERGHIFVQVHLADHSNLATESKVEPVANGMNGHTD---EKTAVATSVSLN 372

Query: 550 DQNGFHDKKHGEGYQDHKHDDDPGTPVSH-GNSMD-EDLEATVWIRCDVYDTGIGIPENA 607
             +GF        +++ K        +S+  N M  E +   V +   V DTGIGIP +A
Sbjct: 373 TLSGFEAADSRNSWENFK------LLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDA 426

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
              +F  +MQ  +  +R YGGTG+GL+I K LVELMGG++   S+ H GSTFTF
Sbjct: 427 QAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTF 480



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 83/141 (58%), Gaps = 4/141 (2%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N+ VA   +K+ G  ++ V +G +A+  +Q    + L LMD+ MP MDG +
Sbjct: 663  ILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVPYKFHLCLMDIQMPEMDGFE 722

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ IR+ E   N  A A    + +     +     R+P++AMTA+ +  + EEC   GM
Sbjct: 723  ATKQIRAMEAKANEQAVA---CDNSEIDGATRAARWRLPVLAMTADVIQATHEECTKCGM 779

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +V+KP   ++L + L+++ 
Sbjct: 780  DGYVTKPFEEKQLFQALQKFL 800


>gi|428307122|ref|YP_007143947.1| PAS sensor protein [Crinalium epipsammum PCC 9333]
 gi|428248657|gb|AFZ14437.1| PAS sensor protein [Crinalium epipsammum PCC 9333]
          Length = 2407

 Score =  159 bits (402), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 174/350 (49%), Gaps = 74/350 (21%)

Query: 304  KTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREE-IAVQKAKETELNKTIH 362
            +T L+  + +    G+ +G      D+T   +   ++A  R++ +A  +AK         
Sbjct: 1772 RTLLVSGQAILDPQGKKLGAVVATQDITLIKQATNEIALARDQALAATRAK--------- 1822

Query: 363  ITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
                     + LATMSHEIR+P+  V+ M  +L +T L  EQR+   ++ +SG+L+L LI
Sbjct: 1823 --------SEFLATMSHEIRTPMNAVIGMTGLLLDTNLTAEQRKFAEIIRNSGELLLTLI 1874

Query: 423  NDILDLSKVESGVMKLEAAKFRPREVV-KHVLQTAAASLQKILMLEGDIADDVPIEVIGD 481
            NDILD SK+ESG ++LE   F  ++V+   +   A  +L K L L   +    P  + GD
Sbjct: 1875 NDILDFSKIESGKLQLELQPFDLQQVITSSLDLLALNALNKNLKLTYLLDPQTPTTIKGD 1934

Query: 482  VLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKH 541
              R+RQIL NL+SNA+KFT +G+V + +              QK  A +S  +++     
Sbjct: 1935 STRLRQILVNLLSNAVKFTDKGEVIVSV------------TAQKLVAEESLNNSI----- 1977

Query: 542  QPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGI 601
               S T +  +G +                                    I+  V DTGI
Sbjct: 1978 ---SYTPTSDSGLYK-----------------------------------IQFAVKDTGI 1999

Query: 602  GIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            GIPEN +  LF+ +MQV +  +R+YGGTGLGLAI K L E+MGG++ V S
Sbjct: 2000 GIPENRMERLFKSFMQVDSSTSRQYGGTGLGLAISKHLSEMMGGQIWVES 2049



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 26/174 (14%)

Query: 832  EMQEKPDRISQ--SPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDV 888
            E+    DR +Q  +  S+ +++ +   K  P +IL+ EDN++N  VA  +++ +G+  D+
Sbjct: 2107 EVTANADRKNQLHTIISTPSKINQNFAKYLPLRILVAEDNRVNQDVALHLLQAIGYRADI 2166

Query: 889  VNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948
            VNNG+E + A+  + YD++LMDV MP MDGL AT+ I S      WD+       +++P 
Sbjct: 2167 VNNGLEVLEALHSRPYDVVLMDVQMPEMDGLSATQQICS-----EWDS-------ESLPW 2214

Query: 949  SGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                       IIAMTANA+    EEC A GM+ ++SKP+  ++L + L +  P
Sbjct: 2215 -----------IIAMTANAMQGDKEECLAAGMNDYISKPIRIEELIQALSRCKP 2257


>gi|413933250|gb|AFW67801.1| putative histidine kinase family protein [Zea mays]
          Length = 966

 Score =  159 bits (402), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 164/294 (55%), Gaps = 13/294 (4%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T L   QR         G  ++ LIN++LD +K+
Sbjct: 356 QFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKI 415

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+  + LE+  F  R ++  V+   ++ S +K + L+  +++ VP  ++GD  R RQI+T
Sbjct: 416 EARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERVPEILLGDPGRFRQIIT 475

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEG-LKQKSKAYQSATDAVKEEKHQPKSQTAS 549
           NL+ N+IKFT  G + +++++      A E  ++  +      TD   E+     S + +
Sbjct: 476 NLVGNSIKFTERGHIFVQVHLADHSNLATESKVEPVANGMNGHTD---EKTAVATSVSLN 532

Query: 550 DQNGFHDKKHGEGYQDHKHDDDPGTPVSH-GNSMD-EDLEATVWIRCDVYDTGIGIPENA 607
             +GF        +++ K        +S+  N M  E +   V +   V DTGIGIP +A
Sbjct: 533 TLSGFEAADSRNSWENFK------LLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDA 586

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
              +F  +MQ  +  +R YGGTG+GL+I K LVELMGG++   S+ H GSTFTF
Sbjct: 587 QAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTF 640



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 83/141 (58%), Gaps = 4/141 (2%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N+ VA   +K+ G  ++ V +G +A+  +Q    + L LMD+ MP MDG +
Sbjct: 823  ILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVPYKFHLCLMDIQMPEMDGFE 882

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ IR+ E   N  A A    + +     +     R+P++AMTA+ +  + EEC   GM
Sbjct: 883  ATKQIRAMEAKANEQAVA---CDNSEIDGATRAARWRLPVLAMTADVIQATHEECTKCGM 939

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +V+KP   ++L + L+++ 
Sbjct: 940  DGYVTKPFEEKQLFQALQKFL 960


>gi|375104871|ref|ZP_09751132.1| signal transduction histidine kinase [Burkholderiales bacterium
            JOSHI_001]
 gi|374665602|gb|EHR70387.1| signal transduction histidine kinase [Burkholderiales bacterium
            JOSHI_001]
          Length = 812

 Score =  159 bits (401), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 184/440 (41%), Gaps = 77/440 (17%)

Query: 582  MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
            +D   +   W+   V D+G+G+    L  +F  + Q      R+YGGTGLGL IC++L  
Sbjct: 424  LDSGTDGAPWLALAVRDSGVGMDAPTLARVFDAFSQADVSTTRRYGGTGLGLTICRRLAS 483

Query: 642  LMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQ 701
            LMGG L  TS    GSTFT  LP   +P  + S  P   + M                  
Sbjct: 484  LMGGELVATSTPGAGSTFTLRLPLAEAP--DGSARPAAPAGM------------------ 523

Query: 702  PRTLGSLFSSNGTSRSKKLLPNSIGFA-SAHKVNGFSETSYSFPSNNRQKETAPLE---- 756
            P  L +L   +  +  + LL    G   +AH  +G  E       N   +E  P E    
Sbjct: 524  PPGLKALVVDDNATGREILLHQLQGMGLAAHSAHGGLEALAQL--NGAVREGRPYELLVL 581

Query: 757  ----DACSVAEVAETLSEPESSFSHSP-----EPENETEVSRGKQCHVETTSWFQNPATE 807
                   +   V   L   ++ F+  P       ++  + + G        +W   P   
Sbjct: 582  DDRMPGMTGRAVVRAL-RGDARFADLPIAMLTSVDDRRDDALGPDA---VQAWLTKPVRR 637

Query: 808  STSHSEANREMIQTSKTNEPQKICE------MQEKPDRISQSPSSSSAEVPETKPKPKPK 861
             T H    R     +  + P  + E      + + P      PS++           +P+
Sbjct: 638  KTLHETLLRLAAGGAAPSRPAPLGEPSVLGGLDDAPRARDGGPSAT-----------RPR 686

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +LL ED+ +N +VA++ +++LG    +  NG EAV   +   +DL+LMD  MP +DG  A
Sbjct: 687  VLLAEDHPVNQLVAQTRLRELGCDTVLATNGREAVARWREGGFDLVLMDCHMPELDGFDA 746

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR+ E                    G S   +R PIIA+TANA++   E C A GMD
Sbjct: 747  TREIRALE--------------------GPSGDGRRTPIIALTANAMAGDRERCLAAGMD 786

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
              + KP T  +L+  L+++ 
Sbjct: 787  EHLPKPFTRDQLQAALQRWL 806



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 108/191 (56%), Gaps = 11/191 (5%)

Query: 320 TIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMS 378
           T G N    D+  Q+  R+ +     E  V++ +  EL       E+  RAK   LA MS
Sbjct: 240 TAGFN----DMLSQIADRDAVL----EATVER-RTQELRLAKDAAEDASRAKSAFLANMS 290

Query: 379 HEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKL 438
           HEIR+P+ GV+ M ++L +T+L   QR       SSG+ +L ++NDILD SK+E+G M L
Sbjct: 291 HEIRTPMNGVLGMLDLLRDTRLSERQRHFADTAHSSGEALLAILNDILDFSKIEAGRMAL 350

Query: 439 EAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAI 497
           E A F    +V   L   A   Q K + L   +   +P  ++GD LR+RQILTNL+SNA+
Sbjct: 351 EHAPFELAPLVDDALGLFARDAQAKGVELLAQVDAALPEHLLGDPLRLRQILTNLLSNAV 410

Query: 498 KFTPEGKVGIK 508
           KFT  G+V ++
Sbjct: 411 KFTARGEVIVQ 421


>gi|374299802|ref|YP_005051441.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552738|gb|EGJ49782.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 974

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/343 (34%), Positives = 166/343 (48%), Gaps = 67/343 (19%)

Query: 332 DQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVS 390
           D   K  ++    +++  QK  E EL +     E   R K + LA MSHEIR+PL G++ 
Sbjct: 413 DATGKLSRILGTVQDVTRQKLLERELVRAKEAAEAGSRVKSEFLANMSHEIRTPLNGILG 472

Query: 391 MAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK 450
           M E+   T L REQR+ L ++ +S D +  L+ DILD S++E+G ++LE   FR RE+++
Sbjct: 473 MTELTLRTGLTREQREYLSMVKASADALATLVGDILDFSRIEAGKLELERKDFRLREILQ 532

Query: 451 HVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             L+      + K L L   I   VP  + GD  R+RQ+L NL+SNAIKFTP G  GI +
Sbjct: 533 AALKPMEMQAEAKGLHLTLRIDPAVPEHLHGDAGRLRQVLLNLVSNAIKFTPSG--GIDI 590

Query: 510 YVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHD 569
            V+P                 +AT       H P  Q                  DHK +
Sbjct: 591 DVLP-----------------TAT------SHTPSGQEP----------------DHKFE 611

Query: 570 DDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGT 629
                                 +   V DTGIGI       +F  + Q  +  +R+Y GT
Sbjct: 612 ----------------------LLFSVADTGIGIDTQLQERVFDIFTQGDSSLSRQYEGT 649

Query: 630 GLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ--VSPI 670
           GLGLAI +QLVELMGG + V S +  G+TF F +  +  ++PI
Sbjct: 650 GLGLAISRQLVELMGGAIWVESAIGQGATFNFTVALERAIAPI 692



 Score = 83.2 bits (204), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 21/128 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           ++LL EDN +N   A  ++K+ G       NG EA+  +  + +DL+LMDV MP MDG+K
Sbjct: 718 RVLLAEDNLVNQHYASILLKRQGCLTTTAANGREALDKLAAEPFDLVLMDVQMPEMDGVK 777

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR+IR      N  A A+                + +PI+AMTA+A+    E    +GM
Sbjct: 778 ATRIIR------NDPAYAK---------------VRNVPIVAMTAHAMQGDRERFLESGM 816

Query: 981 DSFVSKPV 988
           D +VSKP+
Sbjct: 817 DEYVSKPI 824



 Score = 43.5 bits (101), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 24/126 (19%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           IL+VED+    +  + ++   G S+ V  + VEA+         +++ D+ MP MDG + 
Sbjct: 7   ILIVEDSPTQALRLEQLLLGSGLSVRVAASAVEALALADENPPAVVVSDILMPGMDGYEL 66

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            R IR                        +S     IP+I +T  A  E   +   +G  
Sbjct: 67  CRRIR------------------------ASTKLAHIPVILLTTLADPEDILKGLKSGAT 102

Query: 982 SFVSKP 987
           +FV+KP
Sbjct: 103 NFVTKP 108


>gi|414878942|tpg|DAA56073.1| TPA: putative histidine kinase family protein [Zea mays]
          Length = 1007

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 156/295 (52%), Gaps = 31/295 (10%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T LD  Q+  +    +SG  ++ LIN++LD +K+
Sbjct: 425 QFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKTLVSLINEVLDQAKI 484

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LE   F  R V   +L       Q K L L   ++D VP  +IGD  RIRQI+T
Sbjct: 485 ESGKLELEVVPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVPQTLIGDPGRIRQIIT 544

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT +G + + ++VV E                     ++ E     + T S 
Sbjct: 545 NLVGNSIKFTEKGHIYLTVHVVEE-----------------IMHCLEVETGTQYTNTLSG 587

Query: 551 QNGFHDKKHGEGY----QDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606
               + K+  E +    ++    + P  P++           ++ +   V DTG GIP +
Sbjct: 588 YPVANRKRSWENFRLFSRELNSSEMPFAPIA---------SDSISLMISVEDTGAGIPFD 638

Query: 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           A   +F  +MQV    AR +GGTG+GL+I K LV LM G +  +SK   GSTFTF
Sbjct: 639 AQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFSSKPQVGSTFTF 693



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 6/144 (4%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMD 917
            K +I++V+DN +N+ VA   +K+ G  +   ++G EA+  ++   N+D   MD+ MP MD
Sbjct: 862  KKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFMDIQMPEMD 921

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +AT+ IR  E   + +   E G  +A P       + R PI+AMTA+ +  + E+C  
Sbjct: 922  GFEATKRIRVMER--DLNEQIERG--EAPPECVGVRQW-RTPILAMTADVIQATHEQCLK 976

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
            + MD +VSKP   ++L   + ++F
Sbjct: 977  SEMDGYVSKPFEGEQLYREVARFF 1000


>gi|427733873|ref|YP_007053417.1| PAS domain-containing protein [Rivularia sp. PCC 7116]
 gi|427368914|gb|AFY52870.1| PAS domain S-box [Rivularia sp. PCC 7116]
          Length = 1486

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 137/464 (29%), Positives = 226/464 (48%), Gaps = 76/464 (16%)

Query: 211  EELSQI---LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLH---EEDILGKTD 264
            E+LSQ    L++ +  L  +L N   ++  +D E RY  I   + +L    E +ILGKTD
Sbjct: 847  EQLSQTYAALQQNEQQLRAILDNTSSIIYVKDIEGRYVLINKQYLTLANSPESEILGKTD 906

Query: 265  VEIFSGAGVKESQDFKREVLEKG--LPAKREITFETELFGSKTFLIYVEPVFSKSGETIG 322
             E+FS       ++   +V+  G  L  +  I  +  LF   T+L    P+F   G   G
Sbjct: 907  YELFSPDIADNLRNNDNQVIATGTSLEFEETIPLQNNLF---TYLSIKAPLFDADGVAYG 963

Query: 323  VNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEI 381
            +  +  D+T+ +R   K+ +  +E+   +AK+T         E    AK + LA M+HE+
Sbjct: 964  ICGISSDITNLLRANAKLEQQSQELI--RAKQT--------AEAANHAKSEFLARMTHEL 1013

Query: 382  RSPLTGVVSMAEILSNTK-LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
            R+PL  ++   +IL+  + L  +Q+Q L  ++ S   +L LINDILD+SK+E+G+ +L  
Sbjct: 1014 RTPLNAILGFTQILNRQRNLQTQQKQYLDTILRSSHHLLGLINDILDISKIEAGMAELHI 1073

Query: 441  AKF---RPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAI 497
              F   R  + ++ +L   A S Q     E D   ++P  +  D  ++RQIL N++ NAI
Sbjct: 1074 TSFDLYRLLDGIESMLYLKAKSKQLQFTFELD--PEIPQYIQTDESKLRQILINILGNAI 1131

Query: 498  KFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDK 557
            KFT  GKV ++L  +           Q+ K+ Q        E +Q K+Q  + +N     
Sbjct: 1132 KFTDSGKVELRLTALA---------SQEEKSIQ--------ESNQTKTQEQNTEN----- 1169

Query: 558  KHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQ 617
                             P+   +++    + T        D+G GI    L ++F  ++Q
Sbjct: 1170 -----------------PLLSSSTLSLQFQIT--------DSGKGIATEELKSIFDAFVQ 1204

Query: 618  VSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
             +  +  +  GTGLGLAICK+ V+LMGG + + SK+  G+T  F
Sbjct: 1205 SNPTYQAQ-DGTGLGLAICKRFVQLMGGDIKIHSKLGEGTTVEF 1247



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 61/126 (48%), Gaps = 22/126 (17%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            IL+VEDN  N  +   ++  +G  +   NNG EA+   +    +LILMD+ MPV+DG +A
Sbjct: 1280 ILVVEDNWDNRQLLIELLTPIGFQLVEANNGQEAIELWEQDEPNLILMDMRMPVIDGYQA 1339

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T+ IR  E                       N    IPIIA+TA A +E+ E     G D
Sbjct: 1340 TKQIREKE----------------------KNTQHHIPIIALTATAFNENRELILMIGCD 1377

Query: 982  SFVSKP 987
             F+ KP
Sbjct: 1378 DFIPKP 1383


>gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1526

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 137/431 (31%), Positives = 190/431 (44%), Gaps = 85/431 (19%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            ++  V DTGIGIP  A   LF+ + QV A   RKYGGTGLGLAICKQL ELMGG +++ S
Sbjct: 1001 LKLSVRDTGIGIPAAAQSKLFQPFSQVDASTTRKYGGTGLGLAICKQLTELMGGTISLQS 1060

Query: 652  KVHCGSTFTFIL-----PYQVSPIEENSDDPDDLSD---MADQDSVTDDVTAGFFQFQPR 703
            +   GSTF+  L     PY     + ++  P DL     +A  D+ T+       + Q  
Sbjct: 1061 QEGQGSTFSVELTLERQPYVQQLSQPSARIPVDLQGKRLLAVDDNATNR---KILRCQAT 1117

Query: 704  TLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQ--KETAPLEDACSV 761
            T G +                            +E +Y      RQ  +E  P   A   
Sbjct: 1118 TWGMVVEE-------------------------AENAYQAMDKLRQAVREGRPFPLAVLD 1152

Query: 762  AEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQT 821
             ++ E   E    +  +     ET++       V  TS           HS    E+   
Sbjct: 1153 MQMPEVDGETLGRWIKADPQLAETQL-------VMMTSLGLG------EHSRRAAEIGFA 1199

Query: 822  SKTNEPQKICEMQE-------KPDRISQSPSSSSAEVPET-----KPKPKPKILLVEDNK 869
            +   +P K   +QE       K   +S S    S  +P+T     +P+   +ILL EDN 
Sbjct: 1200 AYLVKPVKQSRLQEALVMALGKSSGLSTSLLGMSPVLPQTTPREDRPRQSLRILLAEDNP 1259

Query: 870  INVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFE 929
            +N  VA   ++ LG+  DVV NG E +  +Q  +YDLILMD  MPVMDG +ATR +R  E
Sbjct: 1260 VNQKVALRQLESLGYKADVVANGQEVLDLLQKVSYDLILMDCQMPVMDGYEATRRLRQQE 1319

Query: 930  DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVT 989
                                  S H  R  +IA+TANA+ E  E C   GMD ++SKPV 
Sbjct: 1320 R--------------------RSGH--RTVVIAITANAMQEDRERCLQAGMDDYLSKPVL 1357

Query: 990  FQKLKECLEQY 1000
             + L+  L  +
Sbjct: 1358 KEDLQRLLNHW 1368



 Score =  109 bits (273), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 89/143 (62%), Gaps = 1/143 (0%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LATMSHEIR+P+  V+ M  +L  T L+ EQR  +  +  SGD +L LINDILD SK+E
Sbjct: 852 FLATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRISGDALLTLINDILDFSKLE 911

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G M+LE   F  R  ++ V    A +   K L L   +  +VP  + GD  R+RQIL N
Sbjct: 912 AGEMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLMPPEVPRYLRGDASRLRQILNN 971

Query: 492 LISNAIKFTPEGKVGIKLYVVPE 514
           L+SNAIKFT +G+V I+  V+ E
Sbjct: 972 LVSNAIKFTHQGEVVIQAEVLQE 994


>gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 967

 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 156/338 (46%), Gaps = 78/338 (23%)

Query: 338 EKMAKLREEIAVQKAKETE-----LNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
           EK  KLR     Q  K  E     L K     EE  RAK Q LA MSHEIR+P+ GV+ M
Sbjct: 267 EKRVKLRTADLSQAKKALEAMVVTLEKAKETAEEASRAKSQFLANMSHEIRTPMNGVLGM 326

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
           AE+L  T L  EQR+    + SSG  +L +INDILD SK+E+G ++LE   F  + ++  
Sbjct: 327 AELLMETDLTEEQRRFSKTIQSSGSSLLAIINDILDFSKIEAGKLELETINFNLQILIDD 386

Query: 452 VLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
           V+Q  A+    K L L   I  +  I + GD  R RQ+LTNL+ NAIKFT          
Sbjct: 387 VMQMLASRAHAKQLELAVLIPPETCIFLRGDPTRFRQVLTNLVGNAIKFT---------- 436

Query: 511 VVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDD 570
                       KQ     Q AT             T SDQN    K H           
Sbjct: 437 ------------KQGEVVVQVAT-------------TVSDQNRV--KLH----------- 458

Query: 571 DPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
                              V IR    DTGIGI +  L  LF  + Q      RKYGGTG
Sbjct: 459 -------------------VLIR----DTGIGISQQDLQRLFSPFSQADGSTTRKYGGTG 495

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           LGLAI K++V LMGG L   S+   GSTF+F + +  S
Sbjct: 496 LGLAISKEIVALMGGDLHCESEPGKGSTFSFTVDFAAS 533



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 20/141 (14%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN  N  VA +M++  G  +D+V+NG EAV A+  ++YDL+ MD  MPV+DG +A
Sbjct: 701  VLVAEDNLTNQNVAAAMLRLFGCRVDIVSNGREAVDAISKKSYDLVFMDCQMPVLDGYQA 760

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T  IR FE         E G+E            K +PIIA+TANAL    ++C   GMD
Sbjct: 761  TAAIRQFEK--------ENGVE------------KNMPIIALTANALEGDRKKCLTAGMD 800

Query: 982  SFVSKPVTFQKLKECLEQYFP 1002
             ++SKP    ++   L+ + P
Sbjct: 801  DYLSKPFLKSQILSILKSWSP 821



 Score = 39.7 bits (91), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 29/133 (21%)

Query: 861 KILLVEDNKINVMVAKSMMKQLG---HSIDVVNNGVEAVHAVQCQN--YDLILMDVCMPV 915
           ++L+++DN  N  + K      G    S D    G+E +H  Q +   +DL+L+D  MP 
Sbjct: 552 RVLVIDDNLTNREILKRQTSSWGMKPKSSDCGAKGIEELHLAQQKGEPFDLVLLDKDMPG 611

Query: 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
           MDGL+  + I++  D+   D                        +I +T+      A + 
Sbjct: 612 MDGLEVAQQIKA--DSAIADT----------------------RLIMLTSVGAGNDAAQA 647

Query: 976 FANGMDSFVSKPV 988
             NG+ ++++KPV
Sbjct: 648 KRNGISAYLNKPV 660


>gi|297817796|ref|XP_002876781.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
 gi|297322619|gb|EFH53040.1| cytokinin receptor CRE1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1060

 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 161/293 (54%), Gaps = 17/293 (5%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T+L   QR         G  ++ LIN++LD +K+
Sbjct: 456 QFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKI 515

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LE+  F  R ++  VL   +  S  K + L   ++D VP  V GD  R RQI+ 
Sbjct: 516 EAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIII 575

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ-PKSQTAS 549
           NL+ N++KFT  G + +K+++V +   +K+  + K+     A + V EE     K  + +
Sbjct: 576 NLVGNSVKFTERGHIFVKVHLVEQ---SKDEAEPKT-----ALNGVSEEMIVVSKPSSYN 627

Query: 550 DQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDE-DLEATVWIRCDVYDTGIGIPENAL 608
             +G+        +   KH       VS   S+ E D+ + V +   + DTGIGIP  A 
Sbjct: 628 TLSGYEAADGRNSWDSFKH------LVSEEQSLSEFDISSNVRLMVSIEDTGIGIPLAAQ 681

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
             +   +MQ  +  +R YGGTG+GL+I K LVELM G++   S+ H GSTF F
Sbjct: 682 GRVLMPFMQADSSTSRNYGGTGIGLSISKCLVELMRGQIHFISRPHIGSTFWF 734



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 17/142 (11%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  +    +G  A+  +Q   N+D   MD+ MP MDG 
Sbjct: 926  KILVVDDNIVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHNFDACFMDIQMPQMDGF 985

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E     +A  +  +E              +PI+AMTA+ +  + EEC  +G
Sbjct: 986  EATRQIRMME----IEAKEKTNLEW------------HLPILAMTADVIHATYEECLKSG 1029

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + + F
Sbjct: 1030 MDGYVSKPFEEENLYKSVAKSF 1051


>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1410

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/392 (33%), Positives = 186/392 (47%), Gaps = 85/392 (21%)

Query: 268 FSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFL---IYVEPVFSKSGETIGV- 323
           FSG     S  FK E    G+P    +  E +++G   F       EP  +   E + + 
Sbjct: 590 FSGLPCSTSTPFKIEAY-MGIP----VIVENKVYGILCFWSQQTKTEPFKAVDRELLKLM 644

Query: 324 -NYMGMDVTDQVRKREKMAKLREE-IAVQKAKETELNKTIHITEETMRAKQMLATMSHEI 381
             ++G ++  Q +  + +AK+R+E +A  KAK                  + LATMSHEI
Sbjct: 645 AQWIGSELERQ-KTAQDLAKVRDEALAATKAK-----------------SEFLATMSHEI 686

Query: 382 RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
           R+P+  V+ M  +L +T+L   Q+  +  + SS D +L LINDILD SK+ESG ++LE  
Sbjct: 687 RTPMNAVIGMTGLLLDTRLTSTQQDYVETIRSSSDALLSLINDILDFSKIESGKLELEQH 746

Query: 442 KFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFT 500
            F  R  ++  L   A  ++ K + L   I    P +VIGD  R+RQIL NL+SNA+KFT
Sbjct: 747 PFDLRTCIEESLDLLATKAVSKNIELAYLIDPITPSKVIGDGARLRQILVNLLSNAVKFT 806

Query: 501 PEGKVGIKLYVVP-EPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKH 559
             G+V I L  V  EP  ++E L + S           E   QP                
Sbjct: 807 ETGEVVISLKAVSLEPIVSEENLDENS----------TETTTQPNR-------------- 842

Query: 560 GEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVS 619
              YQ                           I+  V DTGIGIP   +  LF+ + QV 
Sbjct: 843 ---YQ---------------------------IQFAVRDTGIGIPPARMNRLFKSFSQVD 872

Query: 620 ADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +  +R+YGGTGLGL I K+L E+MGG++ V S
Sbjct: 873 SSTSRQYGGTGLGLVISKRLAEMMGGQMWVES 904



 Score = 96.7 bits (239), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 18/142 (12%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL ED+ +N  VA  +++++G+  DV  NG+E + A++ Q YD+ILMD+ MP MDGL+
Sbjct: 1128 RILLAEDHLVNQKVALQILQRMGYRADVAGNGLEVLEALRRQTYDVILMDMQMPEMDGLE 1187

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            A R I+        D +                  +R  IIA+TANA+     +C A GM
Sbjct: 1188 AARQIKKLYGDREQDMS------------------ERPRIIAVTANAMESDRNDCIAAGM 1229

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D ++SKP+  ++L   L+Q  P
Sbjct: 1230 DDYISKPIRMEQLVSVLKQCKP 1251



 Score = 42.0 bits (97), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 35/200 (17%)

Query: 808  STSHSEANREMI---------QTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKP 858
            S ++S  NR ++         QTSK+  P K          I +S S    E  +T    
Sbjct: 919  SMTNSTGNRPLLDPVKIDQVSQTSKSFIPNKAVGSTFYFTIIVESCSHLKKEWGKTPELT 978

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV-QCQNYDLILMDVCMPVMD 917
            + ++L+V++N  N  V     +  G       NGVEA++ + Q + +D+ L+++ MP  D
Sbjct: 979  EKRLLIVDNNATNRQVLTLQTQAWGMLAKTAANGVEALNILRQGEPFDMALLEMQMPDFD 1038

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            GL   + IR                          + +KR+P++ +T+    +S +    
Sbjct: 1039 GLSLAKEIRKL------------------------SPYKRVPLVLLTSMG-RQSIDRAQL 1073

Query: 978  NGMDSFVSKPVTFQKLKECL 997
                + ++KP+   +L   L
Sbjct: 1074 YDFSACLNKPIKQSQLYNVL 1093


>gi|116109372|gb|ABJ74170.1| histidine kinase 1 [Lupinus albus]
          Length = 1043

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/291 (36%), Positives = 157/291 (53%), Gaps = 25/291 (8%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M  +L +T LD  Q++ +     SG  ++ LIN++LD +K+
Sbjct: 461 QFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEFVRTAQVSGKALMSLINEVLDQAKI 520

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S +K + L   ++D VP  +IGD  R RQI T
Sbjct: 521 EAGKLELEAVLFDLRAILDDVLSLFSEKSQEKGVELGVYVSDQVPELLIGDPGRFRQITT 580

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT +G V + +++V E  +                 + K +K      T S 
Sbjct: 581 NLMGNSIKFTDKGHVFVTVHLVEEVVY-----------------STKVDKESTSENTLSG 623

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                 ++  EG++    +     P+   +S   DL   + +   V DTG GIP  A P 
Sbjct: 624 FPVADSRRSWEGFKAFSQEG----PLGSFSSSSGDL---INLIVSVEDTGEGIPLEAQPH 676

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           +F  +MQV    +RK+GGTG+GL+I K LV LM G +   S    GSTFTF
Sbjct: 677 IFTPFMQVGPSISRKHGGTGIGLSISKCLVHLMSGEIGFVSIPKIGSTFTF 727



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 10/142 (7%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N MVA + +K+ G  +  V++G EA+ +++    +D   MD+ MP +DG 
Sbjct: 908  RILIVDDNSVNRMVAAAALKKYGAEVVCVSSGKEAISSLKPPHQFDACFMDIQMPEIDGF 967

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E + N + +    I+       S+ H   +PI+ MTA+ +  + E C   G
Sbjct: 968  EATRTIRDMELSVNSEMSV-YDIDNV-----SNWH---VPILTMTADVIQATQEACLRCG 1018

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   ++L   + ++F
Sbjct: 1019 MDGYVSKPFEAEQLYIEVSRFF 1040


>gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
 gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
          Length = 1076

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/411 (31%), Positives = 191/411 (46%), Gaps = 66/411 (16%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIPE+ L  LF+ + QV +   RKYGGTGLGLAI K+L ELMGG++ V S++  
Sbjct: 719  VKDTGIGIPEDRLNRLFQSFSQVDSSTTRKYGGTGLGLAISKRLCELMGGKIWVDSEIGI 778

Query: 656  GSTFTFILPYQVSPIEENSDDP--DDLSDMADQD--SVTDDVTAGFFQFQPRTLGSLFSS 711
            GSTFTF +    +PI +  D     DL+ +  Q    V D++T      +   +  ++S 
Sbjct: 779  GSTFTFTI---AAPIADTFDCAPIHDLAPLKGQRLLIVDDNLTNRKILTKFANIWGMYSQ 835

Query: 712  NGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEP 771
               S          G A+   + G   +S+     + Q    P  D  ++A         
Sbjct: 836  AAPS----------GPAALELLRG--RSSFDLAVVDMQ---MPEMDGLTLARRI------ 874

Query: 772  ESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKIC 831
                 H  +   +  +       VE  S    P  +S  ++  N+ +       E Q   
Sbjct: 875  -----HGLQKYKDLPLVMLSSLGVEAIS---TPMDKSLFYAILNKPI------QEAQLSA 920

Query: 832  EMQEKPDRISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVN 890
             +     R S++  +S  + P+     K   +LL ED  +N  VA  ++KQLG+  DV N
Sbjct: 921  ILVRAVTRQSENTQNSEFDCPQPSTNSKTLHLLLAEDVVVNQKVALLILKQLGYEADVAN 980

Query: 891  NGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950
            NG E + A+  Q YD++LMD+ MP MDGL A+R I+       W   A            
Sbjct: 981  NGKEVLEALHRQPYDVVLMDLQMPEMDGLTASRAIQE-----TWSPEA------------ 1023

Query: 951  SSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                  R  IIA+TANA+    E+C   GM  +VSKP+  ++LK  LE+Y 
Sbjct: 1024 ------RPYIIALTANAMQGDREKCLEAGMQDYVSKPIRSEELKAALERYL 1068



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 153/304 (50%), Gaps = 26/304 (8%)

Query: 212 ELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSL----HEEDILGKTDVEI 267
           ++++ LK +   L  V+   P ++  +D+E  Y      F +       E ++GKTD ++
Sbjct: 400 QMNEDLKTSQQLLRRVIDTIPQLLFWKDREGIYLDCNLQFATYVGLSQPEQVVGKTDADL 459

Query: 268 -FSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVE----PVFSKSGETIG 322
            ++   +   Q  ++ +L  G         ET L        ++E    P+    G  +G
Sbjct: 460 PWAPPELAAFQASEQRILTTG-------EIETALLKRHNPDTWLETIKVPLHQADGTIMG 512

Query: 323 VNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIR 382
           +  +  DVT + +   K+  +  E+   K +    ++            + LA MSHE+R
Sbjct: 513 ILGVYQDVTARQQADAKLRNVNAELQTAKDRADAASQV---------KSEFLANMSHELR 563

Query: 383 SPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAK 442
           +P+  V+ M  +L++T LD +Q+  +  + SSGD +L LINDILD SK+E+G +++E   
Sbjct: 564 TPMNAVIGMTGLLTHTSLDAQQQDFVDTIRSSGDALLCLINDILDFSKIEAGKLEVEEQP 623

Query: 443 FRPREVVKHVLQTAAASLQKILMLEGDIAD-DVPIEVIGDVLRIRQILTNLISNAIKFTP 501
           F  +  ++  L+  A    K  +    +AD D+P  ++GDV R+RQ+L NL++N +KFT 
Sbjct: 624 FNLKSCIEEALKLVAPRAFKKGLEIAYLADPDLPCGIVGDVTRLRQVLVNLLTNGVKFTD 683

Query: 502 EGKV 505
            G+V
Sbjct: 684 NGEV 687


>gi|357462961|ref|XP_003601762.1| Histidine kinase [Medicago truncatula]
 gi|355490810|gb|AES72013.1| Histidine kinase [Medicago truncatula]
          Length = 1047

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/304 (33%), Positives = 163/304 (53%), Gaps = 34/304 (11%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M  +L +T LD  Q++ +     SG  ++ +IN++LD +K+
Sbjct: 450 QFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDQAKI 509

Query: 432 ESGVMKLEAAKFRPREVVKHVL-------QTAAASLQKILM-------LEGDIADDVPIE 477
           ESG ++LEA  F  R ++  VL       Q       ++         L   ++D VP +
Sbjct: 510 ESGKIELEAVLFDIRSIMDDVLSLFSEKSQGKGVEALRVWFYSFLGAKLAVYVSDQVPQQ 569

Query: 478 VIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVK 537
           +IGD  R RQI+TNL+ N+IKFT +G + + +++V E   + E  ++ +          K
Sbjct: 570 LIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVFHSIEVERESTS---------K 620

Query: 538 EEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVY 597
           + +H       +D      ++  EG++   H+   G   S  ++   DL + +     V 
Sbjct: 621 DAEHTLSGFPVAD-----GRRSWEGFRAFSHEGPLG---SFSSTSSNDLISLI---VSVE 669

Query: 598 DTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGS 657
           DTG GIP  + P +F  +MQV    +RK+GGTG+GL+I K LV LM G +   S+   GS
Sbjct: 670 DTGDGIPLESQPMIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGS 729

Query: 658 TFTF 661
           TFTF
Sbjct: 730 TFTF 733



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 18/142 (12%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  +  V++G+EA+  ++    +D   MD+ MP MDG 
Sbjct: 920  KILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLRPPHQFDACFMDIQMPEMDGF 979

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E+                 S      F  +PI+AMTA+ +  + +EC   G
Sbjct: 980  EATRRIREIEN-----------------SVKDRELFVHLPILAMTADVMQATHQECSKCG 1022

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   ++L   + ++F
Sbjct: 1023 MDGYVSKPFEAEQLYREVSKFF 1044


>gi|392542606|ref|ZP_10289743.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas piscicida JCM
            20779]
          Length = 1564

 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 162/654 (24%), Positives = 268/654 (40%), Gaps = 152/654 (23%)

Query: 354  ETELNKTIHITEETMRAK-----------QMLATMSHEIRSPLTGVVSMAEILSNTKLDR 402
            + ++ K+I+ + E  +A+           + LATMSHEIR+P+ GVV M +IL+ + LD 
Sbjct: 895  QNDITKSINFSAELEQARIKAEQASEAKSRFLATMSHEIRTPMNGVVGMLDILAQSNLDH 954

Query: 403  EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQK 462
            EQ  L  V  SS  ++L++INDILD SK+E+G M+LE+  F  +E++K         L +
Sbjct: 955  EQSHLTKVAKSSALVLLRIINDILDFSKIEAGKMQLESTPFSWQEIIKE--------LAE 1006

Query: 463  ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEG- 521
            +L  + D                                  K+ +  Y+ P+ P  + G 
Sbjct: 1007 LLAYQAD--------------------------------SKKLKLAFYLSPQLPNWQLGD 1034

Query: 522  -LKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGN 580
             ++ +        +A+K  K      T +  +GF                     V+ G 
Sbjct: 1035 PVRLRQILLNLIGNALKFTK------TTATASGF-------------------VEVTIGR 1069

Query: 581  SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
            S D+      ++   V D G G+ E  +  LF+ ++Q  +   R+YGGTGLGL+I  +LV
Sbjct: 1070 SPDDG-----YMEISVKDNGKGMSEEQVENLFKPFVQADSSIQRQYGGTGLGLSITHKLV 1124

Query: 641  ELMGGRLTVTSKVHCGSTFTFIL-----PYQVSPIEENSDDPDDLSDMADQDSVTDDVTA 695
             +M G +   S    GS F   L     P Q S I    D    ++ + D+D    D+  
Sbjct: 1125 AMMEGEIDCRSLEGFGSNFIVTLPYCEVPKQTSAISLTLDRLK-IAVVGDEDKFEKDL-- 1181

Query: 696  GFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPS-NNRQKETAP 754
               Q Q R    ++ +      ++L    +    + + +    T+ +F       KE   
Sbjct: 1182 ---QNQLR----IYEAQCEIFPRELFNAQL--IDSQQFDYLVITAEAFQQLTTEGKEVFI 1232

Query: 755  LEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEA 814
             E  C    +                  N+ ++      +V   + +   A +  SH   
Sbjct: 1233 AESECKYILL----------------DNNQDKLPHANNINVSNLALYPYYAYKVVSHIAT 1276

Query: 815  NREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMV 874
               +I +  TN+        +   +    P+ S A+           IL+VEDN  N  +
Sbjct: 1277 LEGLIDSESTND--------DSDTKFKTLPTISDAQAL------NKLILVVEDNVYNQDL 1322

Query: 875  AKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNW 934
             K  +  LG+   + +NG  A+  ++  ++ LI+ D  MPVMDG + T+  R  E   N 
Sbjct: 1323 FKRQLALLGYQCIIADNGKVALQLLEQYHFSLIISDCHMPVMDGYEFTKQRREHERERN- 1381

Query: 935  DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
                                 + IPIIA TANAL    + CF  GMD +++KP+
Sbjct: 1382 --------------------LEHIPIIAATANALDGEKDICFNAGMDDYIAKPI 1415


>gi|302793795|ref|XP_002978662.1| sensory histidine protein kinase [Selaginella moellendorffii]
 gi|300153471|gb|EFJ20109.1| sensory histidine protein kinase [Selaginella moellendorffii]
          Length = 984

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 164/311 (52%), Gaps = 18/311 (5%)

Query: 356 ELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISS 414
           EL ++    EE  RAK + LA MSHEIR+P+  ++ MA +  +T L  EQR+ L  +  S
Sbjct: 477 ELQESQAAAEEASRAKSEFLANMSHEIRTPIHAIIGMASLALDTNLTEEQREHLDTVAQS 536

Query: 415 GDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADD 473
            D +L ++N ILDL+K+E+G ++LE   F   +++   ++    S  QK L +  +++ +
Sbjct: 537 ADSLLHIVNTILDLAKIEAGRLELEHVPFNVCDLLSSTMKMLQVSARQKDLDMSWEVSAE 596

Query: 474 VPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSAT 533
           VP ++IGD  R++Q + NL+ NAIKFT  G V +   +  E  F +      + +   A 
Sbjct: 597 VPQQLIGDAGRLQQCILNLVGNAIKFTQRGSVFLSAKLYTEDDFVR-----ATSSTSQAL 651

Query: 534 DAVK--EEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSH-GNSMDEDLEATV 590
           + VK  E +    S  AS +   H         D  +     +P +H  N      E  V
Sbjct: 652 EYVKALERRRSSHSTLASPRAFLHS--------DGSNSLKLVSPRNHVSNDPQRREEEAV 703

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
            +   V DTGIGI +     +F+ + Q      R YGGTGLGL+I ++LV +MGGR+ + 
Sbjct: 704 CVLFSVKDTGIGISQEKQKEVFKAFSQADTSITRLYGGTGLGLSIVERLVAMMGGRIWLE 763

Query: 651 SKVHCGSTFTF 661
           S+   GSTF F
Sbjct: 764 SEAGKGSTFYF 774



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 59/245 (24%)

Query: 784 ETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQS 843
           E+E  +G      +T +F        +  E+NR  ++  K+ E +++  +Q + DRI  +
Sbjct: 763 ESEAGKG------STFYFAACFDRVVATQESNRGAVK--KSLEIEEVESIQYQ-DRIQSA 813

Query: 844 PSSSSAEVPETKPKPKP---------KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
             +S + V +  P   P         ++LL EDN IN  VA   +++ G +++VV +G +
Sbjct: 814 EEASVSGVTQLGPVAPPEDLGILRGMRVLLAEDNVINQKVACQQLRKFGTTVEVVGDGEQ 873

Query: 895 AVHAVQ--CQNYDLILMD------------------VCMPVMDGLKATRLIRSFEDTGNW 934
            + A++     YDLILMD                  V MPV+DGL+ATR IR+ E     
Sbjct: 874 CLSALERDRDRYDLILMDVQVSFFFPFVLPDLSFLFVQMPVLDGLEATRSIRAQEKLAG- 932

Query: 935 DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLK 994
                               ++  PII +TA+A+    ++C   GMD++  KP   ++L 
Sbjct: 933 --------------------YRSKPIIGLTAHAIQGYEDKCIEAGMDAYACKPFRAKQLV 972

Query: 995 ECLEQ 999
           + +++
Sbjct: 973 DVIQR 977


>gi|356525172|ref|XP_003531201.1| PREDICTED: histidine kinase 3-like [Glycine max]
          Length = 1030

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 156/291 (53%), Gaps = 25/291 (8%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M  +L +T LD  Q++ +     SG  ++ LIN++LD +K+
Sbjct: 449 QFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKI 508

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E G ++LEA  F  R ++  VL   +   Q K + L   ++D VP  +IGD  R RQI+T
Sbjct: 509 EFGKLELEAVLFDIRAILDDVLSLFSEKSQGKRVELAVYVSDHVPELLIGDPGRFRQIIT 568

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT +G + + +++V E                    +++ +K      T S 
Sbjct: 569 NLMGNSIKFTDKGHIFVTIHLVEE-----------------VVRSIEVDKESNSENTLSG 611

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                 ++  EG++    +   G+  S  N +       V +   V DTG GIP  + P 
Sbjct: 612 SPVADSRRSWEGFKAFSQEGPLGSFSSPSNDL-------VNLIVSVEDTGEGIPLESQPL 664

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           +F  +MQV +  +RK+GGTG+GL+I K LV LM G +   S    GSTFTF
Sbjct: 665 IFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKIGSTFTF 715



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 82/142 (57%), Gaps = 10/142 (7%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  +  V++G +A+ +++    +D   MD+ MP MDG 
Sbjct: 895  KILIVDDNGVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGF 954

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +AT+ IR  ED+ N         E +M    +  ++  +PI+AMTA+ +  + EEC   G
Sbjct: 955  EATKRIREMEDSVN--------REVSMDDFENITNW-HVPILAMTADVIQATHEECLRCG 1005

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   ++L   + ++F
Sbjct: 1006 MDGYVSKPFEAEQLYREVSRFF 1027


>gi|162461543|ref|NP_001105913.1| histidine kinase [Zea mays]
 gi|89242037|dbj|BAE80689.1| histidine kinase [Zea mays]
          Length = 996

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 162/294 (55%), Gaps = 13/294 (4%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T L   QR         G  ++ LIN++LD +K+
Sbjct: 386 QFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKI 445

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+  + LE+  F  R ++  V+   ++ S +K + L+  +++ VP  ++GD  R RQI+T
Sbjct: 446 EARKLDLESVPFDLRSILDDVISLFSSKSREKGIELDVYVSERVPEILLGDPGRFRQIIT 505

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ-PKSQTAS 549
           NL+ N+IKFT  G + +++++      A E    K +   +  +    EK     S + +
Sbjct: 506 NLVGNSIKFTERGHIFVQVHLADHSNLATE---SKVEPVANGMNGHTNEKTAVATSVSLN 562

Query: 550 DQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSM--DEDLEATVWIRCDVYDTGIGIPENA 607
             +GF        +++ K        +S+  S    E +   V +   V DTGIGIP +A
Sbjct: 563 TLSGFEAADSRNSWENFK------LLLSYEKSEMPYESVSDKVTLVVSVEDTGIGIPLDA 616

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
              +F  +MQ  +  +R YGGTG+GL+I K LVELMGG++   S+ H GSTFTF
Sbjct: 617 QAKVFTPFMQADSSTSRTYGGTGIGLSISKCLVELMGGQINFVSRPHVGSTFTF 670



 Score = 89.4 bits (220), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 84/142 (59%), Gaps = 6/142 (4%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N+ VA   +K+ G  ++ V +G +A+  +     + L LMD+ MP MDG +
Sbjct: 853  ILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLHVPYKFHLCLMDIQMPEMDGFE 912

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK-RIPIIAMTANALSESAEECFANG 979
            AT+ IR+ E   N  A A    E      G++   + R+P++AMTA+ +  + EEC   G
Sbjct: 913  ATKQIRAMEAKANEQAVACDDSE----IDGTTRAARWRLPVLAMTADVIQATHEECTKCG 968

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +V+KP   ++L + L+++ 
Sbjct: 969  MDGYVTKPFEEKQLFQALQKFL 990


>gi|162461092|ref|NP_001104866.1| histidine kinase2 [Zea mays]
 gi|38347686|dbj|BAD01584.1| histidine kinase 2 [Zea mays]
          Length = 1007

 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/295 (35%), Positives = 155/295 (52%), Gaps = 31/295 (10%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T LD  Q+  +    +SG  ++ LIN++LD +K+
Sbjct: 425 QFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKTLVSLINEVLDQAKI 484

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LE   F  R V   +L       Q K L L   ++D VP  +IGD  RIRQI+T
Sbjct: 485 ESGKLELEVVPFDLRTVCDDILSLFCGKAQEKGLELAVFVSDQVPQTLIGDPGRIRQIIT 544

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT +G + + ++VV E                     ++ E     + T S 
Sbjct: 545 NLVGNSIKFTEKGHIYLTVHVVEE-----------------IMHCLEVETGIQYTNTLSG 587

Query: 551 QNGFHDKKHGEGY----QDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606
               + K+  E +    ++    + P  P++           ++ +   V DTG GIP +
Sbjct: 588 YPVANRKRSWENFRLFSRELNSSEMPFAPIA---------SDSISLMISVEDTGAGIPFD 638

Query: 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           A   +F  +MQV    AR +GGTG+GL+I K LV LM G +   SK   GSTFTF
Sbjct: 639 AQSRVFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPQVGSTFTF 693



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 6/144 (4%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMD 917
            K +I++V+DN +N+ VA   +K+ G  +   ++G EA+  ++   N+D   MD+ MP MD
Sbjct: 862  KKRIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKEAITLLKPPHNFDACFMDIQMPEMD 921

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +AT+ IR  E   + +   E G  +A P       + R PI+AMTA+ +  + E+C  
Sbjct: 922  GFEATKRIRVMER--DLNEQIERG--EAPPECVGVRQW-RTPILAMTADVIQATHEQCLK 976

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
            + MD +VSKP   ++L   + ++F
Sbjct: 977  SEMDGYVSKPFEGEQLYREVARFF 1000


>gi|423063248|ref|ZP_17052038.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
 gi|406715370|gb|EKD10526.1| multi-sensor hybrid histidine kinase [Arthrospira platensis C1]
          Length = 1493

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/332 (35%), Positives = 165/332 (49%), Gaps = 63/332 (18%)

Query: 329 DVTDQVRKREKMAKLRE-EIAVQKAKETE---LNKTIHITEETMRAK-QMLATMSHEIRS 383
           DV  QV      AKL E E+   +A E +   L +     E   RAK + LATMSHEIR+
Sbjct: 686 DVASQVGITIAQAKLLEVEVKSHRALEAKNQALEEAKLAAEIASRAKSEFLATMSHEIRT 745

Query: 384 PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
           P+  V+ M  +L + +L  EQR  +  + +SGD +L +INDILD SK+ESG ++LE   F
Sbjct: 746 PMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEKQPF 805

Query: 444 RPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
           + R  ++  L+  +    +K L L   I    P  ++ DV R+RQ+L NL+SNAIKFT E
Sbjct: 806 KLRNCLEECLELLSGRADEKGLELAYIIDPSTPKTILVDVTRLRQVLVNLVSNAIKFTSE 865

Query: 503 GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEG 562
           G+V +                           AVK                     H + 
Sbjct: 866 GEVIL---------------------------AVK-------------------ATHPDA 879

Query: 563 YQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADH 622
            +D K  DD     SH             ++ +V DTGIGIP + +  LF+ + QV A  
Sbjct: 880 KKDVKKSDDSDFTESH-----------YVLQFEVRDTGIGIPPDRIDRLFKAFSQVDAST 928

Query: 623 ARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
            R+YGGTGLGLAI ++L +LM G++ V S V+
Sbjct: 929 TREYGGTGLGLAISQRLSQLMNGKMWVASWVN 960



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 87/168 (51%), Gaps = 20/168 (11%)

Query: 835  EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            EK   I  + S     +P+  P    +ILL EDN  N  VA  ++++LG+  D+  NG+E
Sbjct: 1156 EKHYHIKNAESGYDPAIPQ--PHANLRILLAEDNVTNQKVAIKLLQRLGYRADIAGNGLE 1213

Query: 895  AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
             + A+  Q YD+ILMDV MP MDGL+A++ I                   A  S GS   
Sbjct: 1214 VLDALNRQQYDVILMDVQMPEMDGLEASKHI------------------CAAYSDGSDMG 1255

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             ++  IIAMTANA+    E C   GMD +++KPV  + L E L +  P
Sbjct: 1256 PRKPRIIAMTANAMQGDREMCLNAGMDDYITKPVRREALAEALAKCHP 1303


>gi|149189915|ref|ZP_01868194.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1]
 gi|148836230|gb|EDL53188.1| sensory box histidine kinase/response regulator [Vibrio shilonii AK1]
          Length = 1202

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 196/422 (46%), Gaps = 76/422 (18%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            I   V DTGIG+    + +LF+ + Q  +   RKYGGTGLGL+I K LVELMGG+++V S
Sbjct: 641  INFAVKDTGIGMTREQIDSLFQSFSQADSSTTRKYGGTGLGLSITKNLVELMGGKVSVES 700

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDDLSD--MADQDSVTDDVTAGFFQFQP------- 702
            ++  G+ F+F L   VS        P  L    +A  DS  +       Q +        
Sbjct: 701  RLGEGARFSFSLVLGVSESNATVFYPAQLQSQKLALIDSSKESEQVVLSQLERIQCKVDS 760

Query: 703  -RTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSV 761
             R L  L S+    ++   +PN + +   ++V+   ET  S      Q  TA L   CS 
Sbjct: 761  YRDLDQLESALNQGKT---IPNVVLYGWRNEVSDNIETILSMRERAPQVLTAKLIILCSD 817

Query: 762  A--EVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMI 819
            +  ++ E L E +                      ++  S  + P T ST H     + +
Sbjct: 818  SRQDIIEALEETD----------------------IQVASVLEKPFTASTLH-----DAL 850

Query: 820  QTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMM 879
              +  NE  ++   +   + + ++ +S              K+LLVEDN IN  VA+ ++
Sbjct: 851  IAAALNESPRVGHYRSHSEELKRALASLQG----------AKVLLVEDNTINQEVARELL 900

Query: 880  KQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939
            +  G S+DVV NG EAV ++Q + YD +LMD  MP+MDG +ATR IR            E
Sbjct: 901  QSKGLSVDVVENGQEAVTSLQSEIYDGVLMDCQMPIMDGYEATRNIRK-----------E 949

Query: 940  AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
             G+ +             +P+IAMTA+ + +  E+  A GM+  + KP+  +++ + + +
Sbjct: 950  LGLVE-------------LPVIAMTASVMIDDKEKALACGMNDVIGKPIILEEMFQVMAK 996

Query: 1000 YF 1001
            + 
Sbjct: 997  WI 998



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/148 (44%), Positives = 97/148 (65%), Gaps = 2/148 (1%)

Query: 364 TEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
           T+   +AK   LA MSHEIR+P+  ++ M+ +   TKLD +QR  +  + SS   +L +I
Sbjct: 482 TQNASQAKSDFLANMSHEIRTPMNAIIGMSHLALETKLDNKQRHYISKVNSSAQALLGII 541

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGD 481
           NDILD SK+E+G +++E+  F    V++ V+     S  QK L L  D+A DVP ++IGD
Sbjct: 542 NDILDFSKIEAGKVEIESINFSLDSVLEEVISLIDDSAKQKKLSLIIDVASDVPDQLIGD 601

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGIKL 509
            LRI+Q+LTNL SNA+KFT  G+V +K+
Sbjct: 602 PLRIKQVLTNLTSNAVKFTETGEVRVKV 629


>gi|242038337|ref|XP_002466563.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
 gi|241920417|gb|EER93561.1| hypothetical protein SORBIDRAFT_01g010070 [Sorghum bicolor]
          Length = 996

 Score =  157 bits (396), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 164/294 (55%), Gaps = 13/294 (4%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T L   QR         G  ++ LIN++LD +K+
Sbjct: 386 QFLATVSHEIRTPMNGVLGMLDMLLDTDLTSTQRDFAQTAQVCGKALISLINEVLDRAKI 445

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + LE+  F  R ++  V+   ++ S +K + L   +++ VP  ++GD  R RQI+T
Sbjct: 446 EAGKLDLESVPFDLRSILDDVIALFSSKSREKGIELAVYVSERVPEILLGDPGRFRQIIT 505

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT  G + +++++      A E    + +   +  +  K+EK    +  + +
Sbjct: 506 NLVGNSIKFTERGHIFVQVHLADHSNLATE---SEVEPVANGMNGHKDEKTAVATGVSLN 562

Query: 551 Q-NGFHDKKHGEGYQDHKHDDDPGTPVSH-GNSMD-EDLEATVWIRCDVYDTGIGIPENA 607
             +GF        +++ K        +S+  N M  E +   V +   V DTGIGIP +A
Sbjct: 563 TLSGFEAADSRNSWENFK------LLLSYEKNEMPYESVSDKVTLVVSVEDTGIGIPLDA 616

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
              +F  +MQ  +  +R YGGTG+GL+I + LVELMGG++   S+   GSTFTF
Sbjct: 617 QAKVFTPFMQADSSTSRTYGGTGIGLSISQCLVELMGGQINFVSRPQVGSTFTF 670



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 83/141 (58%), Gaps = 4/141 (2%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N+ VA   +K+ G  ++ V +G +A+  +Q    + L LMD+ MP MDG +
Sbjct: 853  ILVVDDNKVNLRVAAGTLKKFGAKVECVESGKDALALLQVPYKFHLCLMDIQMPEMDGFE 912

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ IR+ E   N  A A    E    +  +  H   +P++AMTA+ +  + EEC   GM
Sbjct: 913  ATQQIRTMEAKANEQAVACDDSETDGATRAAKWH---LPVLAMTADVIQATHEECTKYGM 969

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +V+KP   ++L + L+++ 
Sbjct: 970  DGYVTKPFEEKQLFQALQKFL 990


>gi|82466315|gb|ABB76249.1| hybrid type histidine kinase isoform a [Oryza sativa Indica Group]
          Length = 1023

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 151/291 (51%), Gaps = 23/291 (7%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T LD  Q+  +    +SG  ++ LIN++LD +K+
Sbjct: 441 QFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKI 500

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LE   F  R V   +L       Q K L L   ++D VP  +IGD  R+RQI+T
Sbjct: 501 ESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRVRQIIT 560

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NLI N+IKFT  G + + ++VV E                     ++ E     + T S 
Sbjct: 561 NLIGNSIKFTERGHIYLTVHVVEE-----------------VMSCLEVETGIQNTNTLSG 603

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
               + ++  E  +    +       S   S       ++ +   V DTG+GIP  A   
Sbjct: 604 YPVANRRRSWESIRLFNRELH-----SSEKSFAPIASDSISLVISVEDTGVGIPFEAQSR 658

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           +F  +MQV    AR +GGTG+GL+I K LV LM G +   SK H GSTFTF
Sbjct: 659 VFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTF 709



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 83/144 (57%), Gaps = 6/144 (4%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMD 917
            K +I++V+DN +N+ VA   +K+ G  +   ++G +A+  ++   N+D   MD+ MP MD
Sbjct: 878  KKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMD 937

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +ATR IR  E   + +   E G  +A P   S   + R PI+AMTA+ +  + EEC  
Sbjct: 938  GFEATRRIRVMER--DLNERIERG--EAPPECASIQRW-RTPILAMTADVIQATHEECLK 992

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
            + MD +VSKP   ++L   + ++F
Sbjct: 993  SEMDGYVSKPFEGEQLYSEVARFF 1016


>gi|125528916|gb|EAY77030.1| hypothetical protein OsI_04985 [Oryza sativa Indica Group]
          Length = 1023

 Score =  156 bits (395), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 151/291 (51%), Gaps = 23/291 (7%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T LD  Q+  +    +SG  ++ LIN++LD +K+
Sbjct: 441 QFLATVSHEIRTPMNGVLGMLQMLMDTDLDTTQQDYVRTAQASGKALVSLINEVLDQAKI 500

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LE   F  R V   +L       Q K L L   ++D VP  +IGD  RIRQI+T
Sbjct: 501 ESGKLELETVPFDLRTVCDDILSLFCGKAQEKGLELAVYVSDQVPQILIGDPGRIRQIIT 560

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT  G + + ++VV E                     ++ E     + T S 
Sbjct: 561 NLVGNSIKFTERGHIYLTVHVVEE-----------------VMSCLEVETGIQNTNTLSG 603

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
               + ++  E  +    +       S   S       ++ +   V DTG+GIP  A   
Sbjct: 604 YPVANRRRSWESIRLFNRELH-----SSEKSFAPIASDSISLVISVEDTGVGIPFEAQSR 658

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           +F  +MQV    AR +GGTG+GL+I K LV LM G +   SK H GSTFTF
Sbjct: 659 VFTPFMQVGPSIARIHGGTGIGLSISKCLVGLMKGEIGFASKPHVGSTFTF 709



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 83/144 (57%), Gaps = 6/144 (4%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMD 917
            K +I++V+DN +N+ VA   +K+ G  +   ++G +A+  ++   N+D   MD+ MP MD
Sbjct: 878  KKQIIVVDDNIVNLKVAAGALKKYGAEVTCADSGKKAITLLKPPHNFDACFMDIQMPEMD 937

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +ATR IR  E   + +   E G  +A P   S   + R PI+AMTA+ +  + EEC  
Sbjct: 938  GFEATRRIRVMER--DLNERIERG--EAPPECASIQRW-RTPILAMTADVIQATHEECLK 992

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
            + MD +VSKP   ++L   + ++F
Sbjct: 993  SEMDGYVSKPFEGEQLYSEVARFF 1016


>gi|118790698|tpd|FAA00250.1| TPA: histidine kinase [Oryza sativa Japonica Group]
 gi|222625684|gb|EEE59816.1| hypothetical protein OsJ_12359 [Oryza sativa Japonica Group]
          Length = 1005

 Score =  156 bits (394), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 166/294 (56%), Gaps = 13/294 (4%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+L   QR         G  ++ LIN++LD +K+
Sbjct: 385 QFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVCGKALISLINEVLDRAKI 444

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + LE+  F  R ++  V+   ++ S +K + L   +++ VP  ++GD  R RQI+T
Sbjct: 445 EAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPEILLGDPGRFRQIIT 504

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ-PKSQTAS 549
           NL+ N+IKFT  G + +++++      A E    K +   +  +  K+E    P S + +
Sbjct: 505 NLVGNSIKFTERGHIFVQVHLADHSNLATEA---KIEPVVNGMNGHKDEAIAIPTSGSHN 561

Query: 550 DQNGFHDKKHGEGYQDHKHDDDPGTPVSH-GNSMDEDLEA-TVWIRCDVYDTGIGIPENA 607
             +GF        +++ K        +S+  N M  + ++  V +   V DTGIGIP +A
Sbjct: 562 TLSGFEAADSRNNWENFK------LLLSYEKNEMPYESDSDKVTLVVSVEDTGIGIPLHA 615

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
              +F  +MQ  +  +R YGGTG+GL+I K LVE+MGG++   S+   GSTFTF
Sbjct: 616 QGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGSTFTF 669



 Score = 96.7 bits (239), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 7/142 (4%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N+ VA   +K+ G  ++ V +G +A+  +Q    +DL LMD+ MP MDG +
Sbjct: 863  ILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMDGFE 922

Query: 921  ATRLIRSFEDTGNWDAA-AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            ATR IR+ E   N  A  +E+G E A  ++        +PI+AMTA+ +  + EEC   G
Sbjct: 923  ATRQIRAMEGKANEQADDSESGSEIAAKTAK-----WHLPILAMTADVIQATHEECTKCG 977

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   ++L + ++++ 
Sbjct: 978  MDGYVSKPFEEKQLFQAVQKFL 999


>gi|218193648|gb|EEC76075.1| hypothetical protein OsI_13298 [Oryza sativa Indica Group]
          Length = 923

 Score =  156 bits (394), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 166/294 (56%), Gaps = 13/294 (4%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+L   QR         G  ++ LIN++LD +K+
Sbjct: 303 QFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVCGKALISLINEVLDRAKI 362

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + LE+  F  R ++  V+   ++ S +K + L   +++ VP  ++GD  R RQI+T
Sbjct: 363 EAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPEILLGDPGRFRQIIT 422

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ-PKSQTAS 549
           NL+ N+IKFT  G + +++++      A E    K +   +  +  K+E    P S + +
Sbjct: 423 NLVGNSIKFTERGHIFVQVHLADHSNLATEA---KIEPVVNGMNGHKDEAIAIPTSGSHN 479

Query: 550 DQNGFHDKKHGEGYQDHKHDDDPGTPVSH-GNSMDEDLEA-TVWIRCDVYDTGIGIPENA 607
             +GF        +++ K        +S+  N M  + ++  V +   V DTGIGIP +A
Sbjct: 480 TLSGFEAADSRNNWENFK------LLLSYEKNEMPYESDSDKVTLVVSVEDTGIGIPLHA 533

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
              +F  +MQ  +  +R YGGTG+GL+I K LVE+MGG++   S+   GSTFTF
Sbjct: 534 QGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGSTFTF 587



 Score = 96.7 bits (239), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 7/142 (4%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N+ VA   +K+ G  ++ V +G +A+  +Q    +DL LMD+ MP MDG +
Sbjct: 781  ILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMDGFE 840

Query: 921  ATRLIRSFEDTGNWDAA-AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            ATR IR+ E   N  A  +E+G E A  ++        +PI+AMTA+ +  + EEC   G
Sbjct: 841  ATRQIRAMEGKANEQADDSESGSEIAAKTAK-----WHLPILAMTADVIQATHEECTKCG 895

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   ++L + ++++ 
Sbjct: 896  MDGYVSKPFEEKQLFQAVQKFL 917


>gi|190148353|gb|ACE63259.1| cytokinin receptor 1 [Betula pendula]
          Length = 1004

 Score =  155 bits (393), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 103/296 (34%), Positives = 162/296 (54%), Gaps = 13/296 (4%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T+L   QR         G  ++ LIN++LD +K+
Sbjct: 384 QFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAQICGKALIALINEVLDRAKI 443

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ++G ++LEA  F  R ++  VL   +  S  K + L   ++D VP  V+GD  R RQI+T
Sbjct: 444 DAGKLELEAVPFVLRSILDDVLSLFSEKSRHKGIELAVFVSDKVPEIVMGDPGRFRQIVT 503

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAV-----KEEKHQPKS 545
           NL+ N++KFT  G + +K+++  E   A    K ++     +  ++     +E K     
Sbjct: 504 NLVGNSVKFTERGHIFVKVHL-AEHTMAMVNAKAETCLNGGSDRSLFLSGGREFKTLSGC 562

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
           + A ++N +   KH     D +   +    + + N   E +   V   C V DTGIGIP 
Sbjct: 563 EVADERNSWDIFKHL--VADEELRSEASRNMMNTNEASEHVTLMV---C-VEDTGIGIPL 616

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
            A   +F  +MQ  +  +R YGGTG+GL+I K LVELMGG++   S+   GSTF+F
Sbjct: 617 CAQDRVFMPFMQADSSTSRHYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSF 672



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 12/145 (8%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN++N  VA+  +K+ G  ++   +G  A+  +Q   N+D   MD+ MP MDG 
Sbjct: 860  KILVVDDNRVNRRVAEGALKKFGADVECAESGKAALALLQLPHNFDACFMDIQMPEMDGF 919

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR---IPIIAMTANALSESAEECF 976
            +ATR IR  E   N      A  E A+         KR   +PI+AMTA+ +  + +EC 
Sbjct: 920  EATRQIRVMESKENEQINGGATDEGAIR--------KREWHVPILAMTADVIHATYDECL 971

Query: 977  ANGMDSFVSKPVTFQKLKECLEQYF 1001
              GMD +VSKP   + L + + ++F
Sbjct: 972  KCGMDGYVSKPFEEENLYQAVAKFF 996


>gi|356512385|ref|XP_003524900.1| PREDICTED: histidine kinase 3-like [Glycine max]
          Length = 1030

 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 162/310 (52%), Gaps = 27/310 (8%)

Query: 353 KETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMI 412
           KE EL K     +  +   Q LAT+SHEIR+P+ GV+ M  +L +T LD  Q++ +    
Sbjct: 432 KEMELKKQAEAAD--VAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQ 489

Query: 413 SSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIA 471
            SG  ++ LIN++LD +K+E G ++LEA  F  R ++  VL   +   Q K + L   ++
Sbjct: 490 ESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVS 549

Query: 472 DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQS 531
           D VP  +IGD  R RQI+TNL+ N+IKFT +G + + +++V E                 
Sbjct: 550 DHVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEE----------------- 592

Query: 532 ATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVW 591
              +++ +K      T S       ++  EG++    +     P+   +S   DL   + 
Sbjct: 593 VVRSIEVDKESNSENTLSGSPVADSRRSWEGFKAFSQEG----PLGSFSSPSSDLVNLI- 647

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
               V DTG GIP  + P ++  +MQV    +RK+GGTG+GL+I K LV LM G +   S
Sbjct: 648 --VSVEDTGEGIPLESQPLIYTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVS 705

Query: 652 KVHCGSTFTF 661
               GSTFTF
Sbjct: 706 IPKTGSTFTF 715



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 10/142 (7%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K+ G  +  V++G +A+ +++    +D   MD+ MP MDG 
Sbjct: 895  KILIVDDNSVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGF 954

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +AT+ +R  ED+ N         E +M    +  ++  +PI+AMTA+ +  + EEC   G
Sbjct: 955  EATKRVREMEDSVN--------REVSMDDFENITNW-HVPILAMTADVIHATHEECLKWG 1005

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   ++L   + ++F
Sbjct: 1006 MDGYVSKPFEAEQLYREVSRFF 1027


>gi|93006775|ref|YP_581212.1| GAF sensor hybrid histidine kinase [Psychrobacter cryohalolentis
           K5]
 gi|92394453|gb|ABE75728.1| GAF sensor hybrid histidine kinase [Psychrobacter cryohalolentis
           K5]
          Length = 603

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 153/294 (52%), Gaps = 42/294 (14%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+P+ G++ M E+LS+T L  EQR+ +  +  S + +L +IN ILDLSKVE
Sbjct: 193 FLANMSHEIRTPMNGIIGMVEMLSDTMLSVEQREYIENIKVSNEHLLAIINGILDLSKVE 252

Query: 433 SGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G M +++       +   V+   A  + Q+ L+L+    + +   V GD +R++Q++ N
Sbjct: 253 AGKMTIDSIPMNLSSLCNEVVSLFAIKARQRGLVLDYHYTESLSPYVKGDPVRLKQVMVN 312

Query: 492 LISNAIKFTPEG-KVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           L++NAIKFT EG +V I +                              KH   +    +
Sbjct: 313 LVNNAIKFTREGGRVTIDV------------------------------KHMQDNPCLDN 342

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
           ++  H K + +   D   DD   T +          E T+ I  +V DTG+GI   +L  
Sbjct: 343 KDCDHAKGNNDSRLDFAIDDKNSTTIHQ--------EMTLCI--EVTDTGVGIKSESLEA 392

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP 664
           +F  Y Q +    R YGGTGLGL++CK LVELMGG + V S V  G+TF  +LP
Sbjct: 393 IFDAYDQANKYTHRLYGGTGLGLSVCKSLVELMGGYIEVDSVVGIGTTFRVLLP 446



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 75/142 (52%), Gaps = 26/142 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA--VHAVQCQNYDLILMDVCMPVMDGL 919
            ILLVED+ +N M+AK  +   GH++  VN+G +A  + A+  + YD+ILMD  MP+MDG+
Sbjct: 477  ILLVEDDSVNAMIAKKALNNGGHTVTHVNDGQQAIEIFALYPERYDVILMDHHMPIMDGV 536

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +AT  +             E    Q +P           PIIA+TANA+    ++    G
Sbjct: 537  QATIKLH------------ELYAPQDLP-----------PIIALTANAMDGERKKYLDVG 573

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            M  + +KP   ++L   L QY+
Sbjct: 574  MQDYCTKPFKQEQLN-ALVQYW 594


>gi|417359172|ref|YP_002934032.2| sensor kinase protein [Edwardsiella ictaluri 93-146]
 gi|409033339|gb|ACR69797.2| sensor kinase protein [Edwardsiella ictaluri 93-146]
          Length = 956

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 165/634 (26%), Positives = 255/634 (40%), Gaps = 171/634 (26%)

Query: 373  MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
             LAT+SHE+R+PL G++   ++L    L  E ++LLG M +S  L+L++INDILD SK+E
Sbjct: 476  FLATVSHELRTPLYGIIGNLDLLRTKTLPEEVQRLLGAMSNSSGLLLKIINDILDFSKIE 535

Query: 433  SGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNL 492
            S  +K+E  +F PRE                                        ++ ++
Sbjct: 536  SEQLKIEPGRFVPRE----------------------------------------VIPHI 555

Query: 493  ISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQN 552
            I N +      ++ +  ++ PE P A  G            D ++ +  Q  S   S+  
Sbjct: 556  IGNYLPLVVRKRLTLYCFIEPEVPEALSG------------DIMRIQ--QVLSNLLSNAI 601

Query: 553  GFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLF 612
             F D                G  +      D  LE  V       DTG+GIP   +  LF
Sbjct: 602  KFTDT---------------GCIILQARVNDFYLEFRV------RDTGLGIPPRDVLRLF 640

Query: 613  RKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP-YQVSPIE 671
              + QV +   R + GTGLGLAIC++LV LM G + V S    GS FT  LP YQ    +
Sbjct: 641  DPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAVESSPGLGSIFTIRLPMYQARAAQ 700

Query: 672  ENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAH 731
                    L  +  Q ++  D+     +   R L +L S+ G   ++  L   I  ++A 
Sbjct: 701  P-------LQPILQQRTLWLDIHNARLE---RYLQTLLSAAG---ARVCLCPPIVPSTAQ 747

Query: 732  KV---NGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVS 788
             V   +   +T  +F              A  V   A+ L                    
Sbjct: 748  DVLICDHPPQTGLAF--------------AARVRLCADYL-------------------- 773

Query: 789  RGKQCHVETTSWFQNPATESTSHSEANREMIQT-SKTNEPQKICEMQEKPDRISQSPSSS 847
             G  C   +  W  N A        A  E++Q  ++   P+ + E   +        S+ 
Sbjct: 774  -GHACRRASGEWLLNTA--------APLELLQVLNRIFAPESVAECSLE--------SAI 816

Query: 848  SAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQCQNYDL 906
            +A     +      +L+V+D+ IN  +    +  LG S + V  +GV+A+ A+Q Q  D+
Sbjct: 817  AAPTDRQQDFSDIALLIVDDHPINRRLLADQLISLGFSQVAVACDGVDALGALQQQAADI 876

Query: 907  ILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966
            +L DV MP MDG + T  +R                             + +PI+ +TAN
Sbjct: 877  VLTDVNMPNMDGYQLTERLR--------------------------QQGRTLPIVGVTAN 910

Query: 967  ALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            AL+E  + C   GMDS +SKPV  + L   L  Y
Sbjct: 911  ALAEERQRCIEVGMDSCLSKPVMREDLLASLSGY 944


>gi|168703443|ref|ZP_02735720.1| sensory box histidine kinase/response regulator [Gemmata
           obscuriglobus UQM 2246]
          Length = 1018

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 192/434 (44%), Gaps = 96/434 (22%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTGIGIP   L  +F  + Q      RKYGGTGLGL IC++LV LMGGRL   S
Sbjct: 517 LRFSVTDTGIGIPGEKLKAVFEPFTQADGSTTRKYGGTGLGLTICQRLVGLMGGRLWAES 576

Query: 652 KVHCGSTFTFILPYQVS--PIEENSDDPDDLSD----MADQDSVTDDVTAGFFQFQ---- 701
           +   GSTF+F    +++       ++ P DL+D    + D ++    V A   +      
Sbjct: 577 ESGKGSTFSFDARLELAKGAFARAAETPVDLTDFPILIVDDNATNRRVLAETVRHWGAKP 636

Query: 702 ------PRTLGSLFSSNGTSRSKKL------LPNSIGFASAHKVNGFSETSYS----FPS 745
                 P  L  L  +  T +   L      +P   GF++A ++ G SE + +      S
Sbjct: 637 TCSASGPEGLDELRWAAATGKPFPLVLLDGMMPGLDGFSTAERIVGDSELAGTAVLMLTS 696

Query: 746 NNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPA 805
            +RQ + A     C    VA  L +P  S           E+SR     +  T       
Sbjct: 697 ADRQGDAAR----CREIGVAAYLVKPVKS----------AELSRAIAAALRGT------- 735

Query: 806 TESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLV 865
                                    C +   P   S++P  ++   P  +  P+ ++L+ 
Sbjct: 736 -------------------------CALNASPAD-SRTPREAAGRGPAPQ-GPRLRVLVA 768

Query: 866 EDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLI 925
           EDN +N  V   ++++ GH++ +  +G +AV A+  + +D++LMDV MP MDG +AT++I
Sbjct: 769 EDNPVNQRVVLRLLEKFGHAVTMTADGRQAVDALSREPFDIVLMDVQMPEMDGFEATQVI 828

Query: 926 RSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985
           R  E                   +G+  H     I+AMTA+A+    E C   GMD +VS
Sbjct: 829 RRRE-------------------AGTGRH---TLIVAMTAHAMKGDRERCLIAGMDDYVS 866

Query: 986 KPVTFQKLKECLEQ 999
           KPV   +L   L++
Sbjct: 867 KPVQRSELTRVLDR 880



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/144 (45%), Positives = 95/144 (65%), Gaps = 1/144 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ G+V M E+L  T+L  EQR+ +G++ SS D +L +INDILD SK+
Sbjct: 367 EFLANMSHEIRTPMNGIVGMTELLLETRLTPEQRESVGLVKSSADALLTVINDILDFSKI 426

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + L+   F  R++V   L+  A     K L L  ++  D+P  ++GD  R+RQ+LT
Sbjct: 427 EAGKLDLDPLPFSLRDMVGDTLKALAGRAHAKGLELACELLPDLPDVLLGDAHRLRQVLT 486

Query: 491 NLISNAIKFTPEGKVGIKLYVVPE 514
           NL+ NAIKFT  G+V ++   VPE
Sbjct: 487 NLVGNAIKFTDRGEVLVRCERVPE 510


>gi|298492081|ref|YP_003722258.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae'
           0708]
 gi|298233999|gb|ADI65135.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae'
           0708]
          Length = 690

 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/320 (35%), Positives = 158/320 (49%), Gaps = 78/320 (24%)

Query: 343 LREEIAVQKAKET--ELN-KTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTK 399
           ++ EI   K KET  +L+   I +   T    + L+ MSHEIR+P+ GV+ MAE+LS   
Sbjct: 265 IKREIIEAKLKETNEQLSISNIELASLTKAKSEFLSNMSHEIRTPMNGVICMAELLSMKN 324

Query: 400 LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV---LQTA 456
           L  EQ+ ++  +  SG+ +L +INDILD SK+ESG ++LE  +F  R+++K V   L T 
Sbjct: 325 LSEEQQDIVQTIRDSGNALLVIINDILDFSKIESGNLQLEEHRFILRDIIKSVFKLLSTQ 384

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
           AA+  K + LE  I  DVP  ++GD  R+RQ+L NLISNAIK                  
Sbjct: 385 AAT--KNIHLEYSINPDVPTNILGDATRLRQVLLNLISNAIK------------------ 424

Query: 517 FAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPV 576
           F + G           + AV   KHQ                                  
Sbjct: 425 FTEHG---------HVSIAVLANKHQE--------------------------------- 442

Query: 577 SHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAIC 636
                 D+ +E  + I+    DTGIGI  + L  LF+ + Q     +RKYGGTGLGLAI 
Sbjct: 443 ------DQKIELMISIK----DTGIGIEHDRLNQLFQPFTQADTSISRKYGGTGLGLAIS 492

Query: 637 KQLVELMGGRLTVTSKVHCG 656
           K LV LMGG++ V S  + G
Sbjct: 493 KSLVNLMGGKIWVESLGNIG 512



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 25/138 (18%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           KILL EDNKIN  V    +K+LG+S D+ NNG+E +  ++ Q YD+ILMD+ MP MDG+ 
Sbjct: 568 KILLAEDNKINQKVVLLTLKKLGYSADIANNGLEVLEKIETQVYDVILMDMQMPEMDGIA 627

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           AT++IR       +                         IIA+TANAL    + C   GM
Sbjct: 628 ATQIIRQSAKVQPY-------------------------IIALTANALDADRQICLNVGM 662

Query: 981 DSFVSKPVTFQKLKECLE 998
           + ++SKP+     +E L+
Sbjct: 663 NDYISKPIVIADFQEALK 680


>gi|158521107|ref|YP_001528977.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158509933|gb|ABW66900.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 1721

 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/356 (32%), Positives = 175/356 (49%), Gaps = 55/356 (15%)

Query: 323  VNYMGMDVTDQVR----KREKMAKLREEIAVQKAKETELNKTIHITEETMRA-----KQM 373
            + + G D    +R      +K+  +  ++ V   K  E+ +++H   +  RA      + 
Sbjct: 1225 LGFAGFDSISALRHYSDAEKKLLTVFAQMLVNIRKRHEIEQSLHQATQRARAATQAKSEF 1284

Query: 374  LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433
            LA MSHEIR+P+ G++ M  +L  T+L  EQR+   ++ ++GD +L++INDILD SK+E+
Sbjct: 1285 LANMSHEIRTPMNGILGMTSLLLETELTGEQRRFAEIVRNNGDALLEIINDILDFSKIEA 1344

Query: 434  GVMKLEAAKFRPREVVKHVLQTAAASLQ---KILMLEGDIADDVPIEVIGDVLRIRQILT 490
            G ++LE   F   ++++ +    A S+Q   K + L  DI    P  V GD  R+RQIL 
Sbjct: 1345 GKLELEMVDFSLNKLLEGL--AGALSVQAHKKGIELIYDIEPGTPSHVRGDPGRLRQILA 1402

Query: 491  NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
            NL+ NAIKFT +G+V +++                      A D V E            
Sbjct: 1403 NLMGNAIKFTEKGEVFVQI----------------KTGEAVAADTVAET----------- 1435

Query: 551  QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
            + G  D K  E          P   VS     D D  A V +   V DTGIGI    + T
Sbjct: 1436 EAGAPDVKSTE----------PEVAVS---VSDNDAPA-VTLLFSVKDTGIGISPEKIET 1481

Query: 611  LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
            +F  + Q  +   R +GGTGLGL I ++L  ++GG+L VTS    GSTF F   ++
Sbjct: 1482 IFESFTQADSSITRNFGGTGLGLTISRKLAGMLGGKLWVTSNPGAGSTFAFTARFE 1537


>gi|357117708|ref|XP_003560605.1| PREDICTED: histidine kinase 4-like [Brachypodium distachyon]
          Length = 997

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 164/293 (55%), Gaps = 11/293 (3%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+L   QR         G  ++ LIN++LD +K+
Sbjct: 383 QFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVCGKALISLINEVLDRAKI 442

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+  ++LE+  F  R ++  V+   ++ S +K + L   +++ VP  ++GD  R RQI+T
Sbjct: 443 EARKLELESVPFDLRSILDDVVSLFSSKSSEKGIELAVYVSERVPELLLGDPGRFRQIIT 502

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT  G + +++++      A E    K +   +  +  K+E     S  + +
Sbjct: 503 NLVGNSIKFTERGHIFVQVHLADHSNLATEA---KVEPVVNGINGHKDETSTISSSVSHN 559

Query: 551 Q-NGFHDKKHGEGYQDHKHDDDPGT-PVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608
             +GF        +++ K      T  + +G+  D+     V +   V DTGIGIP +A 
Sbjct: 560 TLSGFEAADSRNSWENFKLLLSYETNEMPYGSESDK-----VTLVVSVEDTGIGIPIHAQ 614

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
             +F  +MQ  +  +R YGGTG+GL+I + LVELMGG++   S+   GSTFTF
Sbjct: 615 DRVFTPFMQADSSTSRNYGGTGIGLSISQCLVELMGGQINFVSRPQVGSTFTF 667



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 10/144 (6%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N+ VA   +K+ G  ++ V +G +A+  +Q    +DL LMD+ MP MDG +
Sbjct: 854  ILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALALLQVPHKFDLCLMDIQMPEMDGFE 913

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK---RIPIIAMTANALSESAEECFA 977
            ATR IR+ E      A A    + A  S   S   +    +P++AMTA+ +  + EEC  
Sbjct: 914  ATRQIRAME------AKAHDQEDDAYNSEADSTAKRAEWHLPVLAMTADVIQATHEECTK 967

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             GMD +VSKP   ++L + +E++ 
Sbjct: 968  FGMDGYVSKPFEEKQLFQAVEKFL 991


>gi|356513022|ref|XP_003525213.1| PREDICTED: histidine kinase 4-like [Glycine max]
          Length = 1011

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 165/307 (53%), Gaps = 12/307 (3%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L  T+L   QR       + G  ++ LIN++LD +K+
Sbjct: 386 QFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYAQTAQACGKALIALINEVLDRAKI 445

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K L L   ++D VP  V+GD  R RQI+T
Sbjct: 446 EAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELAVFVSDKVPDIVMGDPGRFRQIVT 505

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT  G + +K+++         G  +K     S      E  H   +  +  
Sbjct: 506 NLVGNSVKFTERGHIFVKVHLSENSMSTMNGKTEKFINRGSG-----EPVHMSGAYNSKT 560

Query: 551 QNGFHDKKHGEGYQDHKH---DDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
            +G+        + + KH   D++     S   +  E  E  V +   V DTGIGIP +A
Sbjct: 561 LSGYEAADERNSWDNFKHLIADEEFFFDASVKKAASESYE-QVTLMVSVEDTGIGIPFSA 619

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
              +F  ++Q  +  +R YGGTG+GL+I K LVELMGG ++  S++  GSTF+F   +  
Sbjct: 620 QDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISQLQVGSTFSFTAGF-- 677

Query: 668 SPIEENS 674
             IE+N+
Sbjct: 678 GTIEKNA 684



 Score = 90.1 bits (222), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 78/145 (53%), Gaps = 15/145 (10%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K  G  +    +G  A+  +Q   N+D   MD+ MP MDG 
Sbjct: 862  KILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEMLQLPHNFDACFMDIQMPEMDGF 921

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK---RIPIIAMTANALSESAEECF 976
            +AT+ IR  E   N         EQ M  +G  N +K    IPI+AMTA+ +  + +EC 
Sbjct: 922  QATQRIRMMETKAN---------EQQM--NGEGNGWKDKYHIPILAMTADVIHATYDECV 970

Query: 977  ANGMDSFVSKPVTFQKLKECLEQYF 1001
              GMD +VSKP   + L + + ++F
Sbjct: 971  KYGMDGYVSKPFEEENLYQAVAKFF 995


>gi|427430343|ref|ZP_18920197.1| hypothetical protein C882_1360 [Caenispirillum salinarum AK4]
 gi|425878803|gb|EKV27514.1| hypothetical protein C882_1360 [Caenispirillum salinarum AK4]
          Length = 806

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/318 (33%), Positives = 155/318 (48%), Gaps = 66/318 (20%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  + +     E   RAK + +A MSHEIR+P+ G++ M  +L +T+L  +Q
Sbjct: 247 DISSRKEAEEAMARAKEHAEAAARAKSEFVAVMSHEIRTPMNGILGMVRLLLDTELSEQQ 306

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA-AASLQKI 463
           R     +  SG+ ++ ++ND+LDLSK+E+G M+L+   F    ++  V+      + +K 
Sbjct: 307 RDYAETIRYSGEALMAILNDVLDLSKLEAGRMQLDETVFETARLLHSVVDLLDGRAREKG 366

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLK 523
           L+LE D+A+ VP  + GD  R+RQ+L NLISNAIK                  F  EG  
Sbjct: 367 LVLEHDVAEGVPEVLAGDAGRLRQVLLNLISNAIK------------------FTDEGAV 408

Query: 524 QKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMD 583
               A Q A  A           +  DQ G                              
Sbjct: 409 SLVVAPQEAPAA-----------SGGDQTG------------------------------ 427

Query: 584 EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
                 V +R +V DTGIGI   A   LF  + Q     +R+YGGTGLGLAIC++ V+LM
Sbjct: 428 -----RVALRFEVRDTGIGISTPARERLFTAFTQADQSISRRYGGTGLGLAICQRFVDLM 482

Query: 644 GGRLTVTSKVHCGSTFTF 661
           GGR+ V S+   GSTF F
Sbjct: 483 GGRIGVDSREGQGSTFWF 500



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 23/128 (17%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           ++LL EDN +N  VA + +++ GH + V  +G EAV       +D++LMDV MP MDG +
Sbjct: 544 QVLLAEDNIVNRKVAMAFLERAGHVVTVARDGYEAVAQAGRGGFDVVLMDVSMPGMDGYE 603

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           AT  IRS  D+                         R+PI+A+TA+A+   AE C A GM
Sbjct: 604 ATSRIRSLPDSRG-----------------------RVPILALTASAMRGEAERCRAAGM 640

Query: 981 DSFVSKPV 988
           D +++KP+
Sbjct: 641 DGYLAKPI 648


>gi|449445544|ref|XP_004140532.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
 gi|449518188|ref|XP_004166125.1| PREDICTED: histidine kinase 3-like [Cucumis sativus]
          Length = 1010

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/291 (34%), Positives = 154/291 (52%), Gaps = 24/291 (8%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M  +L +T LD  Q+  +     SG  ++ LIN++LD +K+
Sbjct: 417 QFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKI 476

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R  +  +L   +  S +K L L   ++D VP  ++GD  R RQI+T
Sbjct: 477 ESGKLELEAIPFNLRADLDDILSLFSGKSQEKGLELAVYVSDSVPETLVGDPGRFRQIIT 536

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT +G + + + +V E                   +++  E    K+ T S 
Sbjct: 537 NLVGNSIKFTEKGHIFVTVNLVKE-----------------VIESIDLEIESSKNSTLSG 579

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
               + +    G++    +   G+   H  +   DL   + +   V DTG+GIP  A   
Sbjct: 580 YPVANRRLSWAGFRTFSQE---GSTACHFMTSPPDL---INLMVSVEDTGVGIPLEAQSR 633

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           +F  +MQV    +R +GGTG+GL+I K LV LM G +   S    GSTFTF
Sbjct: 634 IFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTF 684



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 9/144 (6%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+++DNK+N +VA   +++ G  +   N+G +A+  +    ++D   MD+ MP MDG 
Sbjct: 865  KILVIDDNKVNRIVAAGALQRYGADVVCENSGRDAIQLLTPPHHFDACFMDIQMPEMDGF 924

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH--FKRIPIIAMTANALSESAEECFA 977
            +ATR IR  E   N       GI+    S  +  +  + R+PI+AMTA+ +  + EEC  
Sbjct: 925  EATRRIREIEHRIN------DGIQVGELSKEAYENTCYWRVPILAMTADVIQATHEECLR 978

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             GMD +VSKP   ++L   + Q+F
Sbjct: 979  CGMDGYVSKPFEVERLYREVSQFF 1002


>gi|168043876|ref|XP_001774409.1| ETR7 ethylene receptor [Physcomitrella patens subsp. patens]
 gi|162674261|gb|EDQ60772.1| ETR7 ethylene receptor [Physcomitrella patens subsp. patens]
 gi|163644186|dbj|BAF95743.1| ethylene receptor homolog [Physcomitrella patens]
          Length = 763

 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/346 (32%), Positives = 173/346 (50%), Gaps = 61/346 (17%)

Query: 330 VTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT----EETMRAKQ-MLATMSHEIRSP 384
           V DQV      A + EE    ++   E N  + +     E  +RA+   LA M+HE+R+P
Sbjct: 299 VADQVAVALSHAAILEESMRARSLLVEQNVALDLARREAETAIRARNDFLAVMNHEMRTP 358

Query: 385 LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
           +  +++++ +L  T+L  EQR ++  ++ S +L+  LIND+LDLS++E G ++LE   F 
Sbjct: 359 MHAIIALSSLLQETRLTPEQRSMVDTILKSSNLLATLINDVLDLSRLEDGSLELETRVFN 418

Query: 445 PREVVKHVLQTAA--ASLQKI---LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKF 499
              V K V++  A   S++K+   L L+GD+    P  V+GD  R+ Q + N++ NA+KF
Sbjct: 419 LPIVFKEVMKLVAPITSVKKLKSELTLDGDL----PEFVVGDEKRLMQTVLNVVGNAVKF 474

Query: 500 TPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKH---QPKSQTASDQNGFHD 556
           T EG V I + +                  +  TD  + E H   +P SQ  S     H 
Sbjct: 475 TKEGSVTIHVIL-----------------DRDRTDYQRSEPHSLREPLSQVESRSQRDHH 517

Query: 557 KKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYM 616
              GE +                           +IR +V DTG+G+    +P LF K++
Sbjct: 518 LSLGEQH--------------------------CYIRVEVVDTGVGLNPLDIPNLFNKFL 551

Query: 617 QVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK-VHCGSTFTF 661
           Q  +   R YGGTGLGLAIC++ V LMGG + V S+ +  G+T  F
Sbjct: 552 QADSSPTRNYGGTGLGLAICRRFVSLMGGDIWVESEGIGKGTTVNF 597



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 27/172 (15%)

Query: 833  MQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNG 892
            + EKP+   +  + S A V         K+L+ +DN +N MV + ++ +LG  + VV++G
Sbjct: 603  LPEKPNEQDRQITPSPASVHLRTDFSGVKVLVTDDNGVNRMVTRGLLTRLGCEVTVVSSG 662

Query: 893  VEAVHAVQ--CQNYDLILMDVCMPVMDGLK-ATRLIRSFEDTGNWDAAAEAGIEQAMPSS 949
             E +  +    QN+ ++L+DVCMP MDG + A R+ + F                     
Sbjct: 663  SECLQVISQPGQNFQVLLLDVCMPEMDGYEVAIRIQQKF--------------------- 701

Query: 950  GSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
              + H +R  ++A+TAN   ++  +C   GMD  + KP++ +K++  L +  
Sbjct: 702  --ARH-ERPLMVALTANTDKQTRGKCLDLGMDGVIMKPISLEKMRMNLTELL 750


>gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1209

 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 177/366 (48%), Gaps = 68/366 (18%)

Query: 307 LIYVEP----VFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
           ++Y+ P    +  + G   G   +  DVT  + K + + +  +E+ V   K  E  +   
Sbjct: 484 VMYIRPRAKVLRDREGNIAGYLELAQDVTALMEKEQDLEQKNQELMVLNEKYQEAARQ-- 541

Query: 363 ITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQL 421
              E  RAK + LA MSHEIR+P+  ++ M E+  NT+L  EQ++ L ++ +S + +L L
Sbjct: 542 -AREASRAKSEFLANMSHEIRTPMNAIMGMTELAGNTELTPEQKEYLSIIQNSSESLLAL 600

Query: 422 INDILDLSKVESGVMKLEAAKFRPREVVKH-VLQTAAASLQKILMLEGDIADDVPIEVIG 480
           +NDILD SK+E+G + LE   F  RE V + V   A  + QK + L   +  D+     G
Sbjct: 601 LNDILDFSKIEAGKLDLEYIDFSLRETVHNAVYSVAMLAHQKGVELVVRVEPDMEDGFKG 660

Query: 481 DVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEK 540
           D  R+RQ+L NL+ NAIKFT +G+V +++ +      A+E L+           A ++E 
Sbjct: 661 DPDRLRQVLVNLVGNAIKFTQQGEVQVEVRLAA----AEEMLQH----------AARDEG 706

Query: 541 HQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTG 600
           +  K Q                                             I   V DTG
Sbjct: 707 YLSKLQ---------------------------------------------ILFRVVDTG 721

Query: 601 IGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFT 660
            GI  +    +F  ++Q      RKYGGTGLGL+I  +LVE+M GR+ + S+   GSTF+
Sbjct: 722 SGIAWDKQEGIFEAFVQADGSSRRKYGGTGLGLSISSRLVEMMKGRIWMQSEPGRGSTFS 781

Query: 661 FILPYQ 666
           F+LP +
Sbjct: 782 FVLPLE 787



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 94/163 (57%), Gaps = 28/163 (17%)

Query: 842  QSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
            Q+      E+   +P    KILL EDN++N ++A  ++ Q GH +  V++G EAV A+  
Sbjct: 939  QAQEGKGEEIDGLRPL---KILLAEDNEVNQLLAVRILSQEGHQVRGVHDGREAVDALAR 995

Query: 902  QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII 961
            +N+DL+LMDV MPVMDGL+ATRLIR+ E         E G+              R P+I
Sbjct: 996  ENFDLVLMDVQMPVMDGLEATRLIRAREQ--------EEGL-------------LRTPVI 1034

Query: 962  AMTANALSESAEECFANGMDSFVSKPV----TFQKLKECLEQY 1000
            A+TA+AL    E+C   GMDS+V KP+     F+++K  L ++
Sbjct: 1035 AITAHALKGDREKCLEAGMDSYVQKPIRKADLFKEIKAVLGEH 1077


>gi|403218338|emb|CCK72829.1| hypothetical protein KNAG_0L02110 [Kazachstania naganishii CBS 8797]
          Length = 1200

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 199/706 (28%), Positives = 314/706 (44%), Gaps = 143/706 (20%)

Query: 373  MLATMSHEIRSPLTGVVSMAEI-LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
             +A +SHE+R+PL G++ M  I +  T +D+  R  L ++  SG+L+L ++ ++L  SK 
Sbjct: 546  FIANISHELRTPLNGILGMTAISMEETDIDK-IRNSLKLIFRSGELLLHILTELLTFSKN 604

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADD--VPIEVI---------- 479
                 KLE   F         +   A  ++ I    G +A D  V + +I          
Sbjct: 605  VLKRTKLEKRNF--------CITDVALQIKSIF---GKVAKDQHVRLSIILSPNMIRSMV 653

Query: 480  --GDVLRIRQILTNLISNAIKFTP-EGKVGIKLYVVPEPPFAKEGLKQK---SKAY---- 529
              GD  RI QI+ NL+SNA+KFTP +GKV +++ V+       E L +K   +K Y    
Sbjct: 654  LYGDSNRIIQIVMNLVSNALKFTPVDGKVDVRMKVLG---LYDEALSEKYNHNKVYVKPG 710

Query: 530  QSATDA-----VKEE-------------KHQPKSQTASDQNGFHDKKHGEGYQDHKHDDD 571
               TD+     VK E             K+   S TA D     D+   E  +D+ ++D+
Sbjct: 711  TEITDSTPSLNVKSEGQGKDKFTSDTASKNNTSSDTAYDATPTTDRVAQESDEDNMYEDN 770

Query: 572  ----PGTPVSHGNSM------------DEDLEATV---------W-IRCDVYDTGIGIPE 605
                  T  S+ +++            DED E+ +         W I  +V D+G GI +
Sbjct: 771  ESMISSTTSSYDDAIFNSQFKKTTNLYDEDDESEMGVELETPKTWVISFEVEDSGPGIDK 830

Query: 606  NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
                ++F  ++Q     +R+YGGTGLGL+IC+QL  +M G++ + SKV  GS FTF LP 
Sbjct: 831  GLQESVFEPFVQGDQTLSRQYGGTGLGLSICRQLAGMMKGKMLLESKVGVGSKFTFTLPL 890

Query: 666  -QVSPIE-ENSDDP--DDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLL 721
             Q   I   N +DP  D+ +  + ++           + + R   SL S    SRS  + 
Sbjct: 891  TQTREINFANVEDPFEDEFNAKSKKNR----------KVKFRMARSLNSRK--SRSSIV- 937

Query: 722  PNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEP 781
              + G +S H V+  + T    P     +  +      S     E ++    S  H    
Sbjct: 938  --TAGASSHHSVH--TRTPTKSPRLKCDRSVSDRVVINSPERTGENITFRSESDDHLSHM 993

Query: 782  ENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRIS 841
                +    +     +T     P  +ST  + + R +   S   E        EKP+   
Sbjct: 994  HRNRDKDHERLSASNSTMSLDRPFLQSTGTATSTRSIPHLSSFKE--------EKPNDPL 1045

Query: 842  QSPSSSSAEVPET-KPKPKPKILLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAV 899
             + SSS+ +  +T +     KIL+ EDN +N  V K M++  G   ID+  +G +A   V
Sbjct: 1046 LNVSSSAEQTKKTSEGNGAYKILVAEDNHVNQEVIKRMLQLEGVKDIDLACDGQDAFDKV 1105

Query: 900  -QCQN----YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
             Q Q+    Y+LI MDV MP +DGL +T++IR        D   +               
Sbjct: 1106 KQLQDKGSRYNLIFMDVQMPKVDGLTSTKMIRH-------DLHCD--------------- 1143

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                PI+A+TA A   + +EC   GMD F+SKP+   KLK  L+++
Sbjct: 1144 ---FPIVALTAFADDSNIKECLDAGMDGFLSKPIKRTKLKTILKEF 1186


>gi|225425392|ref|XP_002276961.1| PREDICTED: histidine kinase 3 [Vitis vinifera]
 gi|297738469|emb|CBI27670.3| unnamed protein product [Vitis vinifera]
          Length = 1039

 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/291 (35%), Positives = 158/291 (54%), Gaps = 25/291 (8%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M  +L +T LD  Q+  +    +SG  ++ LIN++LD +K+
Sbjct: 446 QFLATVSHEIRTPMNGVLGMLHMLIDTDLDVTQQDYVRTAQASGKALVSLINEVLDQAKI 505

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LE  +F  + ++  VL   +  S +K + L   I+D VP  +IGD  R RQI+T
Sbjct: 506 ESGKLELEELQFDLQAILDDVLSLFSGKSQEKGVELAVYISDRVPKMLIGDPGRFRQIIT 565

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT +G + + +++V E                   D+++ E       T S 
Sbjct: 566 NLMGNSIKFTEKGHIFVTIHLVEE-----------------LMDSIEVETESSSKNTLSG 608

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                 +   EG++    +       S  +S   DL   + +   V DTG+GIPE A   
Sbjct: 609 LPVADRRCSWEGFRTFNQEG----LTSPFSSSSSDL---IHLIVSVEDTGVGIPEEAQSR 661

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           +F  +MQV    +R +GGTG+GL+I K LV LM G +   S+ + GSTFTF
Sbjct: 662 VFTPFMQVGPSISRIHGGTGIGLSISKCLVGLMNGEIGFVSRPNVGSTFTF 712



 Score = 82.8 bits (203), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 5/142 (3%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N+ VA   +K+ G  +   ++G  A+  ++   ++D   MD+ MP MDG 
Sbjct: 894  KILVVDDNNVNLRVAAGALKKYGADVVCADSGKSAIPLLKPPHDFDACFMDIQMPEMDGF 953

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +AT +IR  E   N ++  + G       +  SN    +PI+AMTA+ +  + EEC   G
Sbjct: 954  EATGIIREMER--NVNSRIQHGEVSVEAYANISNW--HLPILAMTADVIQATHEECLRCG 1009

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   ++L   + ++F
Sbjct: 1010 MDGYVSKPFEAEQLYREVSRFF 1031


>gi|444737612|emb|CCL97997.1| histidine kinase 2, putative, expressed [Musa balbisiana]
          Length = 999

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 157/294 (53%), Gaps = 29/294 (9%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T LD  Q   +    +SG  ++ LIN++LD +K+
Sbjct: 424 QFLATVSHEIRTPMNGVLGMLQMLMDTDLDITQEDYVRTAQASGKALVSLINEVLDQAKI 483

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R V+  +L       Q K L L   ++D VP  ++GD  RIRQI+T
Sbjct: 484 ESGKLELEAVPFDLRAVLDDILSLFYGKAQEKGLELAVYVSDQVPDVLVGDHGRIRQIIT 543

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT  G + + +++                 ++   +++ +E     + T   
Sbjct: 544 NLMGNSIKFTERGHIYLTVHI-----------------FEEVLNSLDKEIEVHSTDTLCG 586

Query: 551 QNGFHDKKHGEGYQDHKHD---DDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
               + ++  E +++ K +    DP    +  N ++        +   V DTG+GIP  A
Sbjct: 587 FPVANRRRSWESFKNFKLELPASDPSLLSTSSNHIN--------LIISVEDTGVGIPLEA 638

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
              +F  +MQV    +R +GGTG+GL+I K LV LM G +   S+   GSTFTF
Sbjct: 639 QSRVFTPFMQVGPSISRIHGGTGIGLSISKCLVGLMKGEIGFVSQPQIGSTFTF 692



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 23/222 (10%)

Query: 789  RGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDR---ISQSPS 845
            +G Q  +       NP +   +++ ++ E I T  T +P +   +Q    R         
Sbjct: 785  KGNQLDIPKILLLANPTSSVNNNTSSSMEYISTIIT-KPLRASMLQVSLRRAMGCGDGEH 843

Query: 846  SSSAEVPETKPKP---KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC- 901
            S +  +P+   +    + +IL+V+DN +N+ VA   +K+ G  +    +G +A+  ++  
Sbjct: 844  SRNGRLPQLSLRGLLHEKQILVVDDNIVNLRVAYGALKKYGAEVTCAESGKKAIGMLKPP 903

Query: 902  QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIE-QAMPSSGSSN--HFKRI 958
              +D   MD+ MP MDG +AT+ IR  E      A     IE + +P   S N  H+  +
Sbjct: 904  HKFDACFMDIQMPEMDGFEATKRIREME------ADINKQIECREVPVETSENVLHW-HV 956

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            PI+AMTA+ +  + EEC    +  F+   +     + CL +Y
Sbjct: 957  PILAMTADVIQATHEECLRMLVHVFIGFSI-----RHCLTEY 993


>gi|428300671|ref|YP_007138977.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
 gi|428237215|gb|AFZ03005.1| multi-sensor hybrid histidine kinase [Calothrix sp. PCC 6303]
          Length = 1595

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 197/423 (46%), Gaps = 85/423 (20%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIP + +  LF+ + QV A   R+YGGTGLGLAICK+L E+MGG++ V S+   
Sbjct: 1103 VKDTGIGIPADRMNRLFQSFSQVDASTTRQYGGTGLGLAICKRLCEMMGGKIWVESEAGV 1162

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAG--FFQFQPRTLGSL-FSSN 712
            GSTF+F +  ++S  +   ++  D   +  +  + DD          Q ++ G    +  
Sbjct: 1163 GSTFSFNIWAEISENQAFQEESADNEFLGKRVLIVDDNATNRQILTLQTQSWGMFNCAVE 1222

Query: 713  GTSRSKKLLPNSIGFASAH------KVNGFSETSYSFPSNNRQK---ETAPLEDACSV-- 761
              S + KL    + F  A       ++NG +          RQK   E  PL    S+  
Sbjct: 1223 SGSEALKLFDQGVSFDLAILDMQMPEMNGIT-----LGEKIRQKPNCENMPLVMLTSINA 1277

Query: 762  AEVAETLSEPE-SSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQ 820
             E++  ++  E ++  + P  + +   + G   H+   +  +    +ST+H         
Sbjct: 1278 QEISTQINNVEFAAIINKPIQQRQLYRTLG---HILGGNLIK--VNQSTTH--------- 1323

Query: 821  TSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMK 880
                        +Q   +++SQ+       +P        +ILL EDN +N  VA   ++
Sbjct: 1324 ------------LQNDQEQLSQN-------LP-------LRILLAEDNTVNQKVALLTLE 1357

Query: 881  QLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKAT-RLIRSFEDTGNWDAAAE 939
            ++G+  D+  NG+E + A+Q Q YDLILMDV MP MDGL AT R+   F D+        
Sbjct: 1358 RIGYRADLAGNGLEVLQALQRQPYDLILMDVQMPEMDGLTATQRICEQFPDS-------- 1409

Query: 940  AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
                            +R  IIAMTANA+    E C   GMD +++KP+   +L+  L +
Sbjct: 1410 ----------------QRPRIIAMTANAMQGDREICIKAGMDDYITKPIRVNELRNALSK 1453

Query: 1000 YFP 1002
              P
Sbjct: 1454 CQP 1456



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 99/173 (57%), Gaps = 10/173 (5%)

Query: 336  KREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEIL 395
            +RE +A+  +E+ + K      N++             LATMSHEIR+P+  V+ M  +L
Sbjct: 915  QRELLAQQNQELNIAKKDAEAANRS---------KSDFLATMSHEIRTPMNAVIGMTGLL 965

Query: 396  SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT 455
             NTKL   Q   +  + SSGD +L LINDILD SK+E+G + LE   F  R  V+  L  
Sbjct: 966  LNTKLTPSQEDFVETIRSSGDSLLTLINDILDFSKIEAGKLDLEEQPFELRSCVEEALNL 1025

Query: 456  AA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
             A  +L+K L L   I    P  ++GDV R+RQIL NL+SNA+KFT  G+V +
Sbjct: 1026 VANRALEKKLELACLIDPTTPNIIVGDVTRLRQILVNLLSNAVKFTANGEVVV 1078


>gi|440683655|ref|YP_007158450.1| GAF sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
 gi|428680774|gb|AFZ59540.1| GAF sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122]
          Length = 1069

 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/383 (31%), Positives = 172/383 (44%), Gaps = 99/383 (25%)

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSM 391
           Q    E+  + REE+ +   K + L +  H  E   RAK   LA MSHEIR+P+  V+ M
Sbjct: 487 QAHLLEQETRQREELTL---KNSALEQAKHAAEAANRAKSDFLAMMSHEIRTPMNAVIGM 543

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
             +L +T L  +Q+  +  + +SG+ +L +INDILD SK+ESG ++LE   F  R  V+ 
Sbjct: 544 TGVLLDTNLTVQQQDFVETIRNSGESLLTIINDILDFSKIESGKLELEEQSFELRNCVER 603

Query: 452 VLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
           VL T A  + +K + L   I   VP ++IGD+ R+RQIL NL+SNAIK            
Sbjct: 604 VLDTLAPKAAEKDIELAYLINSQVPAKIIGDLTRVRQILMNLVSNAIK------------ 651

Query: 511 VVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDD 570
                 F K+G    S   +   + V E    PK                          
Sbjct: 652 ------FTKKGEVILSVHAKPIANTVAESHPSPK-------------------------- 679

Query: 571 DPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
                             T  I   + DTGIGIP N +  LF+ + Q  +   RKYGGTG
Sbjct: 680 ------------------TYEILFAIKDTGIGIPANKMNLLFQPFSQADSSTTRKYGGTG 721

Query: 631 LGLAICKQLVELMGGRLTVTSK----------------VHC-----GSTFTFILPYQVSP 669
           LGL I K+L E+MGG L V S+                + C     GSTF+F +      
Sbjct: 722 LGLVISKRLSEMMGGTLWVESQGSIGGNPSSRWQDEFLISCLPFDQGSTFSFTITV---- 777

Query: 670 IEENSDDPDDLSDMADQDSVTDD 692
                  P+D++   D + ++ D
Sbjct: 778 -------PEDINSNLDSEELSTD 793



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 79/140 (56%), Gaps = 23/140 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL ED  +N  VA  M+K++G+  DV  NG+E + A+Q Q+YD++LMDV MP MDGL+
Sbjct: 946  RILLAEDTVVNQKVALLMLKKIGYRADVAANGLEVLTALQRQSYDVVLMDVQMPEMDGLE 1005

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
             T++I        W+A+                  +R  IIAMTANA+    E C A GM
Sbjct: 1006 TTQII-----CQGWEAS------------------QRPYIIAMTANAMQGDREICLAAGM 1042

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D ++SKPV    L   L +Y
Sbjct: 1043 DDYISKPVQIVDLFHALSRY 1062


>gi|215878091|gb|ACJ63457.1| putative histidine kinase [Brassica rapa subsp. pekinensis]
          Length = 1070

 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 162/296 (54%), Gaps = 9/296 (3%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L +T+L   QR         G  ++ LIN++LD +K+
Sbjct: 463 QFLATVSHEIRTPMNGILGMLAMLLDTELSSTQRDYAQTAQVCGKALIALINEVLDRAKI 522

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LE+  F  R ++  VL   +  S  K + L   ++D VP  V GD  R RQI+ 
Sbjct: 523 EAGKLELESVPFDIRSILDDVLSLFSEESRNKGIELAVFVSDKVPEIVKGDSGRFRQIII 582

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT +G + +K+++  +   +K+G   +SK   +   A ++     K  + + 
Sbjct: 583 NLVGNSVKFTEKGHIFVKVHLAEQ---SKDG--AESKPALNGGVASEDITAASKPSSYNT 637

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
            +G+        +   KH       ++   S + +  + V +   + DTGIGIP  A   
Sbjct: 638 LSGYEAADGRNSWDSFKHLLSSEELLT---SSEFEASSNVRLMVSIEDTGIGIPLTAQGR 694

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
           +F  +MQ  +  +R YGGTG+GL+I K LVELM G+++  S+   GSTF F   ++
Sbjct: 695 VFMPFMQADSSTSRTYGGTGIGLSISKCLVELMRGQISFVSRPRVGSTFWFTAVFE 750



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 17/142 (11%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+++DN +N  VA   +K+ G  +    +G  A+  +Q   ++D   MD+ MP MDG 
Sbjct: 932  KILVIDDNMVNRRVAAGALKKFGAEVVCAESGQVALGLLQIPHSFDACFMDIQMPQMDGF 991

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E     +A  +  +E              +PI+AMTA+ +  + EEC  +G
Sbjct: 992  EATRQIRMMEK----EAKEKTKLEW------------HLPILAMTADVIHATYEECLKSG 1035

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + + F
Sbjct: 1036 MDGYVSKPFEEENLYKSVAKSF 1057


>gi|357521453|ref|XP_003631015.1| Histidine kinase [Medicago truncatula]
 gi|355525037|gb|AET05491.1| Histidine kinase [Medicago truncatula]
          Length = 760

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 163/308 (52%), Gaps = 12/308 (3%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L  T+L+  QR       + G  ++ LIN++LD +K+
Sbjct: 143 QFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKI 202

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K L L   ++D VP  V+GD  R RQI+T
Sbjct: 203 EAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVT 262

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT  G + +K+++         G   K + Y++     +E  H         
Sbjct: 263 NLVGNSVKFTERGHIFVKVHLSENRKPVTNG---KHETYRNG--GSEEVVHASGGYNLKT 317

Query: 551 QNGFHDKKHGEGYQDHKH---DDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
            +G+        + +  H   D++     S       +    V +   V DTGIGIP +A
Sbjct: 318 LSGYEAADERNNWDNFNHLIADEEFFCDASTKKVASNEFYEQVTLMVCVEDTGIGIPFSA 377

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
              +F  ++Q  +  +R YGGTG+GL+I K LVELMGG++   S+   GSTF+F   + +
Sbjct: 378 QDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGI 437

Query: 668 ---SPIEE 672
              +PI E
Sbjct: 438 FKKNPITE 445



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 10/142 (7%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K  G  +   ++G  A+  +Q    +D   MD+ MP MDG 
Sbjct: 619  KILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEMLQFPHKFDACFMDIQMPEMDGF 678

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E T N +  +E G  +      S  H   +PI+AMTA+ +  + EEC   G
Sbjct: 679  EATRRIREMERTANEETNSECGERK------SEFH---LPILAMTADVIHATYEECLKCG 729

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + ++F
Sbjct: 730  MDGYVSKPFEEENLYQAVAKFF 751


>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
            DSM 8797]
 gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
            DSM 8797]
          Length = 1362

 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 194/415 (46%), Gaps = 72/415 (17%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIPE+    +F+ + QV    AR++ GTGLGLAI  +L+E+MGG++ V S+V  
Sbjct: 845  VRDTGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAIASRLIEMMGGKIWVNSEVGK 904

Query: 656  GSTFTFILPYQVSPIEENSDDP------DDLSDMADQDSVTDDVTAGFFQFQPRTLGSL- 708
            GS F F   ++++  E  +++P      D L  +   D++T+       Q     LGS  
Sbjct: 905  GSEFHFTARFELTEEEVPANEPLLKAELDGLRVLIVDDNLTN------CQILEEMLGSWN 958

Query: 709  FSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETL 768
              +   +R    L   +  AS    + F                 P+ D  SVA+  +  
Sbjct: 959  MQTQSINRGSDAL--DVMHASQQSKHPFDLVLVD--------ANMPVMDGFSVAKAIKQD 1008

Query: 769  SEPESS-FSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEP 827
            S   S+        + + E+SR K+  +                +   + + Q+   N  
Sbjct: 1009 STLGSAVIMMITSSDRQGEISRCKELGIA---------------AHLIKPLKQSELFNSI 1053

Query: 828  QKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSID 887
             +   M   P    ++ ++  A+       P  KILL ED+ +N  +A +++K  GH I 
Sbjct: 1054 AETLGMNGTPQHDMRTATADLAQ-----RIPPLKILLAEDSLVNQKLALALLKPQGHEIA 1108

Query: 888  VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFE-DTGNWDAAAEAGIEQAM 946
            VV NG +AV+  + + +DLILMDV MP MDGL+ATR IR +E +TG              
Sbjct: 1109 VVLNGSDAVNERKNREFDLILMDVQMPEMDGLEATRQIREYEQETG-------------- 1154

Query: 947  PSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV----TFQKLKECL 997
                     + +PIIAMTA+A+    E C   GMD +VSKPV     F  ++ECL
Sbjct: 1155 ---------EHVPIIAMTAHAMKGDRERCLEAGMDGYVSKPVRVRELFSTIEECL 1200



 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 102/168 (60%), Gaps = 2/168 (1%)

Query: 340 MAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNT 398
            A    +I V+K  E EL +     E   RAK   LATMSHEIR+P+  V+ M E+L +T
Sbjct: 658 FAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIGMTELLLDT 717

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
            L+  QR+ L ++  SG+ +L +INDILD SK+E+G   LE A F  RE +   +++ A 
Sbjct: 718 DLNSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLRENLGDTMRSLAV 777

Query: 459 -SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
            +  K L L   +  DVP  ++GD  R+RQI+ NL+ NAIKFT EG++
Sbjct: 778 RAHHKHLELAFHLDADVPDTIVGDRFRLRQIIVNLVGNAIKFTEEGEI 825


>gi|190148357|gb|ACE63261.1| histidine kinase 3 [Betula pendula]
          Length = 1053

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 160/310 (51%), Gaps = 27/310 (8%)

Query: 353 KETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMI 412
           K TEL K     +  +   Q LAT+SHEIR+P+ GV+ M ++L +T LD  Q+  +    
Sbjct: 429 KMTELKKQAEAAD--VAKSQFLATVSHEIRTPMNGVLGMLDMLMDTDLDVTQQDYVRTAQ 486

Query: 413 SSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIA 471
            SG  ++ LIN++LD +K+ESG ++LEA +F  R ++  VL   +  S    + L   I+
Sbjct: 487 DSGKALVSLINEVLDQAKIESGRLELEAVQFDLRAILDDVLSLFSGKSPGNGVELAVYIS 546

Query: 472 DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQS 531
           D VP  +IGD  R RQI+TNL+ N+IKFT +G + + +++V E                 
Sbjct: 547 DQVPEMLIGDAGRFRQIITNLMGNSIKFTEKGHIFVTVHLVEE----------------- 589

Query: 532 ATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVW 591
              +++ E     + T S   GF        +   +     G+     +S  + +   V 
Sbjct: 590 VIGSIEVETESSSNNTLS---GFPVADRKSSWDGFRTFSQEGSTCPLSSSSSDLINLIV- 645

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
               V DTG+GIP  A   +F  +MQV    +R +GGTG+GL+I K LV LM G +   S
Sbjct: 646 ---SVEDTGVGIPREAQSRVFTPFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFVS 702

Query: 652 KVHCGSTFTF 661
             + GSTFTF
Sbjct: 703 IPNTGSTFTF 712



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 5/142 (3%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N+ VA   +K+ G  +    +G +A+  ++   ++D   MD+ MP +DG 
Sbjct: 894  KILIVDDNNVNLRVAAGALKKYGADVVCAESGKKAISLLKPPHHFDACFMDIQMPEIDGF 953

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E   N ++     +    P + S+ H   +PI+AMTA+ +  + EE    G
Sbjct: 954  EATRRIRDMEHNIN-NSIQRGEVSVEGPQTISNWH---VPILAMTADVIQATHEESIKCG 1009

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   Q+L   + ++F
Sbjct: 1010 MDGYVSKPFEAQQLYREVSRFF 1031


>gi|357521451|ref|XP_003631014.1| Histidine kinase [Medicago truncatula]
 gi|355525036|gb|AET05490.1| Histidine kinase [Medicago truncatula]
          Length = 1029

 Score =  152 bits (385), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 163/308 (52%), Gaps = 12/308 (3%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L  T+L+  QR       + G  ++ LIN++LD +K+
Sbjct: 412 QFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKI 471

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K L L   ++D VP  V+GD  R RQI+T
Sbjct: 472 EAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVT 531

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT  G + +K+++         G   K + Y++     +E  H         
Sbjct: 532 NLVGNSVKFTERGHIFVKVHLSENRKPVTNG---KHETYRNGGS--EEVVHASGGYNLKT 586

Query: 551 QNGFHDKKHGEGYQDHKH---DDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
            +G+        + +  H   D++     S       +    V +   V DTGIGIP +A
Sbjct: 587 LSGYEAADERNNWDNFNHLIADEEFFCDASTKKVASNEFYEQVTLMVCVEDTGIGIPFSA 646

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
              +F  ++Q  +  +R YGGTG+GL+I K LVELMGG++   S+   GSTF+F   + +
Sbjct: 647 QDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGI 706

Query: 668 ---SPIEE 672
              +PI E
Sbjct: 707 FKKNPITE 714



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 10/142 (7%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K  G  +   ++G  A+  +Q    +D   MD+ MP MDG 
Sbjct: 888  KILVVDDNVVNRRVAAGALKNFGADVKCADSGKAALEMLQFPHKFDACFMDIQMPEMDGF 947

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E T N +  +E G  +      S  H   +PI+AMTA+ +  + EEC   G
Sbjct: 948  EATRRIREMERTANEETNSECGERK------SEFH---LPILAMTADVIHATYEECLKCG 998

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + ++F
Sbjct: 999  MDGYVSKPFEEENLYQAVAKFF 1020


>gi|242280736|ref|YP_002992865.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123630|gb|ACS81326.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 774

 Score =  152 bits (384), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 159/335 (47%), Gaps = 82/335 (24%)

Query: 345 EEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
           E +AV+ AK T             RAK Q LA MSHEIR+P+  ++ MAEIL+++ LD E
Sbjct: 254 EAMAVEAAKGT-------------RAKSQFLAAMSHEIRTPMNAILGMAEILADSHLDDE 300

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQK 462
           QR+ + ++  SG+ +L LIN+ILDLSK+E+G +  E        ++    + TA A   K
Sbjct: 301 QRRFVEILQESGESLLHLINEILDLSKIEAGEVAFEKRDLNLDRIIGKAFKVTAHAGHGK 360

Query: 463 ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGL 522
            L L  +I  DVP++++GD  R++QI  NLI NAIKFT  G V ++  +V +P  A  G 
Sbjct: 361 GLELAYNINRDVPVQLMGDPSRLQQIFVNLIGNAIKFTERGFVVVETSLV-QPDMADNG- 418

Query: 523 KQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSM 582
                                     S +  F  K  G G +D K D             
Sbjct: 419 -------------------------GSLKIHFAVKDSGIGIEDDKLD------------- 440

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
                                      ++F ++ Q  +   RKYGGTGLGL+ICK L E 
Sbjct: 441 ---------------------------SIFDRFTQADSSTTRKYGGTGLGLSICKSLCEA 473

Query: 643 MGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
           MGG++ + S+   G+T    LP++  P    S+ P
Sbjct: 474 MGGKIWLESRKGFGTTVHMELPFEKDPRVSISNSP 508



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 25/144 (17%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILLVEDNK N M+ +   K + H++ + +NG E        ++DLI MD+ MP+MDG + 
Sbjct: 651  ILLVEDNKANCMLIQLFFKDMPHNLRIAHNGEEGFGQASTHSFDLIFMDIEMPIMDGYEC 710

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR      +W+  AE       PS           I+A+TA+AL+E+  +    G D
Sbjct: 711  TRKIR------DWENRAERK-----PS----------IIVALTAHALTEAKHKILEAGCD 749

Query: 982  SFVSKPVTFQK----LKECLEQYF 1001
            SF++KPV+  K    + E    YF
Sbjct: 750  SFLTKPVSKDKIISTINELCSPYF 773


>gi|297610356|ref|NP_001064436.2| Os10g0362300 [Oryza sativa Japonica Group]
 gi|255679337|dbj|BAF26350.2| Os10g0362300 [Oryza sativa Japonica Group]
          Length = 598

 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 158/291 (54%), Gaps = 23/291 (7%)

Query: 391 MAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK 450
           M ++L +T+LD  QR  +     SG  ++ LIN++LDL+K+ESG ++LEA +F  R+++ 
Sbjct: 13  MLQMLMDTELDTTQRDFVVTAQESGKSLINLINEVLDLAKIESGKIELEAVRFDVRDILD 72

Query: 451 HVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           +V+   +  S  K + L   ++D VP  +IGD  R RQI+TNL+ N++KFT +G + I++
Sbjct: 73  NVVSLFSEKSWAKGIELAVLVSDQVPDVLIGDPWRFRQIITNLVGNSMKFTEQGHIFIRV 132

Query: 510 YVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHD 569
           +++ E     E L   S      T      K+     T S     +++K  E ++  K  
Sbjct: 133 HLIEEVKRKMEALDDTSPENIEVT---ANSKNTMPYNTLSGLEVANNRKTLESFRMFKDS 189

Query: 570 DDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGT 629
            D         ++D     +V +   V DTGIGI ++A   +F  +MQ     +R YGGT
Sbjct: 190 SD---------AID-----SVNLLVTVEDTGIGITKDAQTRIFTPFMQADGSTSRTYGGT 235

Query: 630 GLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDL 680
           G+GL+I K+LVELMGG +   SK    STF+F   ++     EN  DP D+
Sbjct: 236 GIGLSITKRLVELMGGEIGFVSKPGVSSTFSFTAIFK-----ENRKDPGDI 281



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 81/141 (57%), Gaps = 5/141 (3%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DN +N +VA   +K+ G  +  V++G EA+  +Q    +D   MDV MP MDG +
Sbjct: 453  ILVVDDNAVNRIVAAGALKKYGAIVTCVDSGKEAISRLQPPHKFDACFMDVQMPEMDGFE 512

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATRL+RS E   N     +AG E +    G+  H+  +PI+AMTA+ +  + E C   GM
Sbjct: 513  ATRLVRSVESKIN--DTIQAG-EVSSEIYGNKAHW-HVPILAMTADVIQATFEGCMECGM 568

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +V+KP   Q+L   +  + 
Sbjct: 569  DGYVAKPFEEQQLYSAVAHFL 589


>gi|345863470|ref|ZP_08815681.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent Tica)]
 gi|345125548|gb|EGW55417.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent Tica)]
          Length = 1149

 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 126/422 (29%), Positives = 192/422 (45%), Gaps = 59/422 (13%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            + T   R  V DTGIGIPE     LF+ + Q  +   RKYGGTGLGLAI KQLVELMGG 
Sbjct: 642  DGTSRFRISVIDTGIGIPEAQQQRLFKSFTQADSSTTRKYGGTGLGLAISKQLVELMGGS 701

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDD---VTAGFFQFQPR 703
            + V+S    GSTF   +P  +S   E    P   +D++    +  D   +    F+ Q R
Sbjct: 702  IGVSSTQGEGSTFWLEIPLGLSQPRE----PLGHADLSRLKCLILDDNLLNQRIFRDQLR 757

Query: 704  TLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAE 763
            + G    +  T      L   +  ASA+K        ++ P  N ++    L        
Sbjct: 758  SCGMQIHTVTTGDEALTLATEM--ASANKPFDIFLLDFNLPGINGEQIALRLRQM----- 810

Query: 764  VAETLSEPESSFSHSPEPENETEVSRGKQCHVETT---SWFQNPATESTSHSEANREMIQ 820
                      ++  +P     +  +RG   H E     ++   P      H EA   ++ 
Sbjct: 811  ---------PAYKETPMILLTSSGNRGDAKHFEEVGFDAYLIKPVPHQILH-EAIEGVVS 860

Query: 821  TSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMK 880
             +  ++ Q+I       +  +Q PS+ +  +         KILLVED   N  VA S++ 
Sbjct: 861  NTLQHKEQEIITQYHVIEGHTQ-PSNKTEHI-------DAKILLVEDLLPNQKVASSVLS 912

Query: 881  QLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFE-DTGNWDAAAE 939
            ++G ++++ +NG  A+  +   ++D++LMD  MP MDGL+ATR IR  E DTG       
Sbjct: 913  KMGCTVEIADNGRIALERLAEDSFDIVLMDCQMPEMDGLEATRAIRQRERDTGT------ 966

Query: 940  AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
                               PIIAMTAN ++   ++C   GMD F+SKP   ++L + L +
Sbjct: 967  -----------------HTPIIAMTANNMASDRKQCLEAGMDDFISKPFEREQLAKLLGK 1009

Query: 1000 YF 1001
            + 
Sbjct: 1010 WL 1011



 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 133/238 (55%), Gaps = 28/238 (11%)

Query: 282 EVLEKGLPA---KREITFETELFGSKTFLIYVEPVF-----SKSGETIGVNYMGMDVTDQ 333
           ++L +G+P+    R  + ET+L      ++ V+ +      +KSG+    +Y  M + D 
Sbjct: 416 QLLNEGVPSAYMNRTWSGETQLISIDGRMMTVDQLIVLHEATKSGQ----HYFSMVMRD- 470

Query: 334 VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMA 392
                        I+ +K  E EL +     E   +AK + LA MSHEIR+P+ GV+ MA
Sbjct: 471 -------------ISDRKQVERELFEAKEKAESAAKAKSEFLAMMSHEIRTPMNGVLGMA 517

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF-RPREVVKH 451
           E+L+ TKLD EQ++ L V+  SG+ +L +INDILD SK E+G ++LEA  F   R +   
Sbjct: 518 ELLAGTKLDDEQQEFLEVITQSGNSLLGIINDILDFSKAEAGKIELEAISFDLERTIYDA 577

Query: 452 VLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           V   +A +  K L L      ++P +V+GD  RIRQI+TNL  NAIKFT +G + I +
Sbjct: 578 VRLLSANASSKGLELIISYPPELPRQVMGDAGRIRQIITNLAGNAIKFTQQGHIAINV 635


>gi|168005127|ref|XP_001755262.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens
           subsp. patens]
 gi|162693390|gb|EDQ79742.1| CKI3a AtCKI1/2-like cytokinin receptor [Physcomitrella patens
           subsp. patens]
          Length = 1218

 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 160/313 (51%), Gaps = 23/313 (7%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LAT+SHEIR+P+ GV+ M  +L  T L  +Q + + +  +SG+ ++ LI+D+LDLSK+E
Sbjct: 538 FLATVSHEIRTPMNGVIGMTNLLMGTDLTPQQLEYVKIAQASGNALVALISDVLDLSKIE 597

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G M++E   F  RE + ++L      + QK L +   + D VP  + GD  R+RQ+L N
Sbjct: 598 AGRMEIETVPFDIREELDNILSLFEEKVHQKKLEISALVHDSVPRWLYGDPGRLRQVLIN 657

Query: 492 LISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKE---EKHQPKSQTA 548
           L+ NAIKFT +G + + + +V +P F +      S+ +    D  +    E   P     
Sbjct: 658 LVGNAIKFTKQGSIFLCVRLV-DPYFYETVSPPSSQQFLDLVDTRRRRIPEAELPDGNHD 716

Query: 549 SDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVW-------------IRC- 594
           +   G    +       H H   P   +  G S      A  W             + C 
Sbjct: 717 ASLKGVIAVRSNLFRPRHPHMAPPRLSMKSGPSSTSACVAE-WRNWKPIGGLDFDEVICV 775

Query: 595 -DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKV 653
             + D+GIGIP+     LF  ++Q  +  +R+YGGTG+GL+IC++LV   GG + V S+ 
Sbjct: 776 ISIEDSGIGIPKFMQNRLFEPFVQADSSTSREYGGTGIGLSICQKLVRFTGGDIVVESEP 835

Query: 654 HCGSTFTF--ILP 664
             GS F F  +LP
Sbjct: 836 GEGSVFKFSLVLP 848



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 5/130 (3%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ----NYDLILMDVCMPVMD 917
            +L+V+DN +N  VA SM+++ G ++  VN G +A+ AV+ Q     +D+ILMD+ MP MD
Sbjct: 1021 LLVVDDNMVNSTVASSMLQRYGATVVTVNGGNQAIIAVKQQESDKQFDMILMDIQMPEMD 1080

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +ATRLIR +E        A   IE          H  RIPI+A+TA+ +  + E CF+
Sbjct: 1081 GYEATRLIRKWEVDKCEQCRALEKIEYDYGEPKECPH-HRIPIVAVTADVMKGTHEMCFS 1139

Query: 978  NGMDSFVSKP 987
             GMD ++ KP
Sbjct: 1140 AGMDDYIPKP 1149


>gi|254409964|ref|ZP_05023744.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196183000|gb|EDX77984.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1946

 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/352 (33%), Positives = 168/352 (47%), Gaps = 64/352 (18%)

Query: 330  VTDQVRKREKMAKLREEIAVQKAKETELN----KTIHITEETMRAKQ-MLATMSHEIRSP 384
            V DQV      A+L E+   Q+ +  E N    K   I E   RAK   LATMSHEIR+P
Sbjct: 1211 VADQVGIALAQAQLLEQEKHQRQQLAEQNVAMEKAKQIAEAANRAKSDFLATMSHEIRTP 1270

Query: 385  LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
            +  V+ M  +L +T+L  EQ +    + +SG+ +L +INDILD SK+ESG ++LE   F 
Sbjct: 1271 MNAVIGMTGLLLDTQLSHEQAEFAETIRNSGEALLTIINDILDFSKIESGKLELEEQPFN 1330

Query: 445  PREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
             R  ++  L      + +K + L        P  + GD+ R+RQIL NL+SNA+K     
Sbjct: 1331 LRTCIEESLDLLTPKAAEKAIELAYLFDPHTPNTIRGDITRLRQILVNLLSNALK----- 1385

Query: 504  KVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGY 563
                         F  +G           T +V  ++  P+S                  
Sbjct: 1386 -------------FTHQG---------EVTVSVSSKRVSPQSLEQ--------------- 1408

Query: 564  QDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHA 623
                        +SH  + ++  E    I   V DTGIGIP + L  LF+ + QV +  +
Sbjct: 1409 ------------LSHRTNKEQQYE----ILFAVKDTGIGIPPDRLDRLFKAFSQVDSSTS 1452

Query: 624  RKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSD 675
            R YGGTGLGL I K+L E+MGGR+ V S+V  GS F F +   V  I+  S+
Sbjct: 1453 RHYGGTGLGLVISKRLSEMMGGRIWVESEVGKGSIFYFTIVAPVCHIDNLSN 1504



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 74/138 (53%), Gaps = 23/138 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL EDN +N  V   ++ ++G+  DV  NG+E + A+  Q+YD++LMDV MP MDGLK
Sbjct: 1661 RILLAEDNVVNQQVGLHILGRMGYRADVAANGLEVLEALHRQSYDVVLMDVQMPEMDGLK 1720

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ I        W A                    R  IIAMTANA+    E C   GM
Sbjct: 1721 ATQRI-----CQEWSAE------------------NRPHIIAMTANAMRGDRETCLQAGM 1757

Query: 981  DSFVSKPVTFQKLKECLE 998
            D ++SKP+  ++L   L+
Sbjct: 1758 DDYISKPIRVEELVRSLQ 1775


>gi|440789602|gb|ELR10908.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain containing
           protein [Acanthamoeba castellanii str. Neff]
          Length = 761

 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/337 (32%), Positives = 169/337 (50%), Gaps = 25/337 (7%)

Query: 351 KAKETELNKTIH--ITEETMRAKQMLATMSHEIRSPLTGVVSMAEIL---SNTKLDREQ- 404
           +A+   + +  H  + + T    + LA +SHE+R+PL G+V+ +E L     T+  +E  
Sbjct: 295 RAQAVRMYQEAHARLVKATKAKARFLANVSHELRTPLHGIVAASEELMERVTTECPKENQ 354

Query: 405 ---RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF-RPREVVKHVLQTAAASL 460
              R++  ++  S   +L LIND+LD  ++++  +K+E   F   +E  K V      + 
Sbjct: 355 PAVREMCKIVTESSRHMLALINDVLDFERLDTNQLKIENIPFDLHQEFTKLVKMLEPTAR 414

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKE 520
           QK + L   +A D     +GD LR  QIL NL +NA+KFTPEG  G     V      K 
Sbjct: 415 QKQIALTYRLAVD-NCRRLGDPLRFGQILVNLAANALKFTPEG--GSVNITVTTGCTGKP 471

Query: 521 GLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGN 580
             +Q+    +        ++   +S      +G   K   E  +D   D++  +P     
Sbjct: 472 TSRQRKNPQKGPKPPPPPDRRADESAAVRSSSG--GKAEEEKNEDGDSDNEDDSPYD--- 526

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
             DE+L   V     V D+GIGIPE+ +P LF+ + Q      RK+GG+GLGLAICK+L 
Sbjct: 527 --DENLVTVV-----VQDSGIGIPEDHIPLLFKSFTQADISTTRKFGGSGLGLAICKRLC 579

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
           +LM GR+   S+   GSTF F LP  ++P EE    P
Sbjct: 580 QLMNGRIGCHSRRDQGSTFWFTLPLPLAPEEEKVRSP 616



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 22/142 (15%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQCQN-YDLILMDVCMPVMDG 918
            ++LLVEDNKIN ++ K M+ + G   + V  NG + V A + Q  + ++LMD  MPVMDG
Sbjct: 634  RVLLVEDNKINQLIGKQMLARAGCGDVVVAPNGEQGVLAWEQQGPFHIVLMDYHMPVMDG 693

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            L+ATR IR  E         E G+              R PIIA++A+   +        
Sbjct: 694  LEATRRIRQREQ--------ELGLS------------TRTPIIAISASLEPKERARGATA 733

Query: 979  GMDSFVSKPVTFQKLKECLEQY 1000
            GMD ++ KP   + L   + ++
Sbjct: 734  GMDDWLEKPFNRRVLTATILRW 755


>gi|302037237|ref|YP_003797559.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605301|emb|CBK41634.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1013

 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 163/309 (52%), Gaps = 29/309 (9%)

Query: 211 EELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFP---SLHEEDILGKTDVEI 267
           +E+   L  ++  L  +L ++P ++  +D+E RY  +   F    +L  E ILGKTD E+
Sbjct: 340 KEMDLKLANSEAQLRAILDHSPALIFLKDREGRYLDVNRQFERAFNLSREAILGKTDTEL 399

Query: 268 FSGAGVKESQDFKREVLEKGLPAKREITFE-TELF--GSKTFLIYVEPVFSKSGETIGVN 324
           FS       Q   R VLE    AKR + FE T  +  G +T +++  P+  +      V 
Sbjct: 400 FSPKQAAVFQTNDRLVLE----AKRPLRFEETADYHDGPRTSIVFKFPLLDRDRMLYAVG 455

Query: 325 YMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRS 383
            +  D+TD+ R  E +A  R++                   E  R K + LATMSHEIR+
Sbjct: 456 GVATDITDRKRAEEALALARDQ-----------------AMEAARLKSEFLATMSHEIRT 498

Query: 384 PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
           P+ GV+ M  +L  + L  EQR+   V+ +SGD +L +INDILD SK+E+G + LE   F
Sbjct: 499 PMNGVIGMTNLLLESALTPEQRECAEVVRNSGDHLLMIINDILDFSKIEAGRLTLETIDF 558

Query: 444 RPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
             R ++   L   A  + QK L L G I   VP  V GD  R+RQ+L NL+ NAIKFT  
Sbjct: 559 DFRGMIDDTLDLIAEQARQKGLDLVGLIDASVPSAVRGDPGRLRQVLINLLGNAIKFTDR 618

Query: 503 GKVGIKLYV 511
           G+V +++ V
Sbjct: 619 GEVVLRMTV 627



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 27/180 (15%)

Query: 822  SKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQ 881
            +  ++P      +E P R    P  +   + E   + +P +L+V+D K+N +VA S++++
Sbjct: 853  APVSDPSGQTAAEEGPMR----PLITRHSMQEQTDRGRPHVLVVDDQKLNQVVAVSLLER 908

Query: 882  LGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAG 941
            LG  +DV  +G  A  AV   +YDL+ MD  M  MDG +A  LIR  E  G         
Sbjct: 909  LGCLVDVAESGQAAAEAVAATSYDLLFMDCQMFGMDGYQAAALIRKREGGG--------- 959

Query: 942  IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                           R+PIIA+T +       +C A GMD  ++KP+ F  L+  L ++ 
Sbjct: 960  --------------PRVPIIALTGHMQQSDRAQCLAAGMDDCLTKPLQFTLLEAMLRRWL 1005



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 52/83 (62%)

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
           ++ +D ++ V +R DV DTGIGI       LF+ + QV A   R+YGGTGLGLAICK+L 
Sbjct: 626 TVAQDAQSHVVLRGDVTDTGIGISPEGRNKLFQTFSQVDASTTRRYGGTGLGLAICKRLT 685

Query: 641 ELMGGRLTVTSKVHCGSTFTFIL 663
           ELM G + + S    GS F F +
Sbjct: 686 ELMQGEIGMESAPGKGSRFWFTV 708


>gi|428305491|ref|YP_007142316.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
           9333]
 gi|428247026|gb|AFZ12806.1| multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC
           9333]
          Length = 1154

 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 153/307 (49%), Gaps = 71/307 (23%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LA MSHEIR+P+  ++ M  +L NT+L   QR  +    +S D +L +INDILDLSK+
Sbjct: 436 QFLANMSHEIRTPMNAIIGMTGLLLNTELTPLQRDFVETTQTSSDALLTIINDILDLSKI 495

Query: 432 ESGVMKLEAAKFRPREVVKHVL-----QTAAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           ESG ++LE   F  R  ++  L     + A  +++ + +    I+  VPI + GD  R+R
Sbjct: 496 ESGKLELENYSFNLRTCIEEALDLLTPKAAGKNIELVCL----ISPQVPIIIWGDSTRLR 551

Query: 487 QILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQ 546
           QIL NL+SNAIKFT +G++ +                        + +A + EK++  S+
Sbjct: 552 QILVNLLSNAIKFTEKGEILL------------------------SVNAQEFEKNKKLSK 587

Query: 547 TASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606
                               K D++    +S              I+  V D+GIGIP +
Sbjct: 588 --------------------KLDNNLNRQIS--------------IQFAVKDSGIGIPAD 613

Query: 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
            +  LF+ + QV +   R YGGTGLGLAI KQL E+MGG++ V S    G     I P +
Sbjct: 614 RMDRLFKSFSQVDSSTTRHYGGTGLGLAISKQLSEMMGGQMWVES----GGVIAGIPPQE 669

Query: 667 VSPIEEN 673
             P+  N
Sbjct: 670 WQPVSNN 676



 Score = 97.8 bits (242), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/142 (40%), Positives = 79/142 (55%), Gaps = 23/142 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL EDN +N  VA  ++K++G+  D+ NNG+EA+ A++ Q+YD++LMD+ MP MDGL 
Sbjct: 889  RILLTEDNVVNQKVALHILKRMGYEADIANNGLEALVALRRQSYDVVLMDMQMPEMDGLT 948

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR I        W +                   +R  IIAMTANA+    E C   GM
Sbjct: 949  ATRQI-----CQEWSSE------------------ERPRIIAMTANAMQGDRELCLNAGM 985

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D +VSKP+    L E L +  P
Sbjct: 986  DDYVSKPIRVDVLIEALSKCQP 1007


>gi|63095199|gb|AAY32330.1| AHK1 [Phyllostachys praecox]
          Length = 409

 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 147/278 (52%), Gaps = 4/278 (1%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L  T L   Q+         G  ++ LIND+LD +K+
Sbjct: 134 QFLATVSHEIRTPMNGVLGMLDMLLGTDLTLTQKDHAQTAQMCGRALITLINDVLDRAKI 193

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  V+   ++ S +K + L   + DDVP  VIGD  R RQILT
Sbjct: 194 EAGKLELEAVPFDLRSLMDDVISLFSSKSREKCIELAVFVCDDVPEVVIGDPWRFRQILT 253

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ NA+KFT  G V +++ +        +   Q      +  D   E        T S 
Sbjct: 254 NLVGNAVKFTERGHVFVRVCLAENSNVEDD---QVLNGTLNGKDGKIESTANGALNTLSG 310

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                ++   E ++    D +       G   +++   +V +   + DTG+GIP +A   
Sbjct: 311 FQAADERNSWEYFKLLLSDKESLLDELEGEKSNQNDSDSVTLMISIEDTGVGIPLHAQDR 370

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           +F  +MQ  +  +R YGGTG+GL+I K L ELMGG+++
Sbjct: 371 VFTPFMQADSSTSRNYGGTGIGLSISKCLAELMGGQIS 408


>gi|356524638|ref|XP_003530935.1| PREDICTED: histidine kinase 4-like [Glycine max]
          Length = 1016

 Score =  150 bits (380), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 156/294 (53%), Gaps = 10/294 (3%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L  T+L   QR       + G  ++ LIN++LD +K+
Sbjct: 386 QFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYAQTAQACGKALIALINEVLDRAKI 445

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K L L   ++D VP  V+GD  R RQI+T
Sbjct: 446 EAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELAVFVSDKVPDIVMGDPGRFRQIVT 505

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N++KFT  G V +K+++         G     K  +     + E  H      +  
Sbjct: 506 NLVGNSVKFTERGHVFVKVHLSENRMSTMNG-----KIEKFLNGGLDEPVHMSGGYNSKT 560

Query: 551 QNGFHDKKHGEGYQDHKH---DDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
            +G+        + + KH   D++     S      E  E  V +   V DTGIGIP +A
Sbjct: 561 LSGYEAADERNSWDNFKHLIADEEFFYDASVKRVASESYE-QVTLMVSVEDTGIGIPFSA 619

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
              +F  ++Q  +  +R YGGTG+GL+I K LVELMGG ++  S+   GSTF+F
Sbjct: 620 QDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISQPQVGSTFSF 673



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 77/147 (52%), Gaps = 15/147 (10%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K  G  +    +G  A+  +Q   N+D   MD+ MP MDG 
Sbjct: 862  KILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEMLQLPHNFDACFMDIQMPEMDGF 921

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPS-SGSSNHFK----RIPIIAMTANALSESAEE 974
            +ATR IR  E   N         EQ M    G  N +K     IPI+AMTA+ +  + +E
Sbjct: 922  EATRQIRMMETKAN---------EQQMNGECGEGNGWKDKKYHIPILAMTADVIHATYDE 972

Query: 975  CFANGMDSFVSKPVTFQKLKECLEQYF 1001
            C   GMD +VSKP   + L + + ++F
Sbjct: 973  CVKCGMDGYVSKPFEEENLYQAVAKFF 999


>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 1274

 Score =  150 bits (380), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 146/310 (47%), Gaps = 70/310 (22%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ G++  AEIL  T L+ +Q + + ++   G+ +L LINDILDLSK+
Sbjct: 546 EFLANMSHEIRTPMNGILGFAEILLQTNLNSQQEESVRIIQQCGENLLDLINDILDLSKI 605

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG M LE   F  R+++   +      L +K + ++  I  D+P    GD  RIRQ+L 
Sbjct: 606 ESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISIQKDLPDYFKGDPTRIRQVLN 665

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+SNA K                  F  EG                             
Sbjct: 666 NLLSNAAK------------------FTHEG----------------------------- 678

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
               H +    G +DH  + D  T V                   V DTGIGIP   L  
Sbjct: 679 ----HVEVKVNGQKDHSVETDSFTLV-----------------FSVSDTGIGIPREKLDL 717

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP-YQVSP 669
           +F  + Q      RKYGGTGLGL I + L+ LMGG++TV S+V+ GS F+F +P   V  
Sbjct: 718 IFESFTQADGSTTRKYGGTGLGLTISRSLINLMGGQITVESEVNRGSKFSFSIPGLPVVL 777

Query: 670 IEENSDDPDD 679
           +E N  + +D
Sbjct: 778 VENNYSEEND 787



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 25/157 (15%)

Query: 845  SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
            S S ++ P+ K K    +LLVEDN+ N  + + ++   G+ + +  NG +A+  +   N+
Sbjct: 1039 SISGSDAPDNKNKI-TNVLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEMLNQSNF 1097

Query: 905  DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
            D++LMD+ MPVMDG + TR+IRS E                         +K +PIIA+T
Sbjct: 1098 DIVLMDMQMPVMDGYETTRVIRSDE------------------------RYKSLPIIALT 1133

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            A+A+    E+C A G D +++KPV    L + +++Y 
Sbjct: 1134 AHAMKGDNEKCLAAGCDDYLAKPVKRDILIKTIKKYI 1170


>gi|443477242|ref|ZP_21067102.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
 gi|443017649|gb|ELS32043.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
          Length = 1557

 Score =  150 bits (380), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 124/412 (30%), Positives = 187/412 (45%), Gaps = 65/412 (15%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V D+GIGIP +    LF+ + QV +   R+YGGTGLGLAI  QL+++MGG + V S+V  
Sbjct: 1199 VKDSGIGIPRDRYDRLFKPFSQVDSSTTRQYGGTGLGLAIANQLMQMMGGVMLVESEVGV 1258

Query: 656  GSTFTFILPYQ----VSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLG-SLFS 710
            GSTF+F +       VSP E NS+       + + + V       F Q    TL   +  
Sbjct: 1259 GSTFSFTIATTAVKTVSPPEWNSNLAGKRLLILEDNEVNRQSLTIFAQ----TLNMEVMV 1314

Query: 711  SNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE 770
            +N ++++   L N   F  A    GF            QKE       C   E+ E +  
Sbjct: 1315 ANSSAQAIAWLQNEPAFDLAIMDAGFPV----------QKELCNASQDCDHCEIRERIR- 1363

Query: 771  PESSFSHSPEPENETEVSRGKQC-HVETTSWFQNPATESTSHSEANREMIQTSKTNEPQK 829
                +++S      T   R  Q  + + T     P   S  +S  N+     S       
Sbjct: 1364 ---FYANSLPIILLTHTYRCDQVSNDDITICLSKPTKRSQLYSALNQFFSHAS------- 1413

Query: 830  ICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVV 889
            + E++ K + I     +S   +         KILL EDN +N  VA   + +LG+ +DVV
Sbjct: 1414 LAEIKSKQNSIFDENFASLFPL---------KILLAEDNIVNQKVATRFLNRLGYRVDVV 1464

Query: 890  NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSS 949
             NG E + ++  Q+YD+I MDV MP MDGL AT+ I                        
Sbjct: 1465 ANGAEVLESLHRQSYDVIFMDVFMPEMDGLTATKKI------------------------ 1500

Query: 950  GSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
              + +  +  I+A+TANA+    E C   GM+ +VSKP+  ++L + LE+ +
Sbjct: 1501 -VAEYIHKPWIVALTANAVQSDREICLNVGMNDYVSKPIQIKELTKALERAY 1551



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 97/157 (61%), Gaps = 3/157 (1%)

Query: 350  QKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
            Q+AK  EL K +   +   RAK + LATMSHEIR+P+  V+ MA +L +T L+ EQ +  
Sbjct: 1021 QEAK-MELLKAMETAQTANRAKSEFLATMSHEIRTPMNAVIGMASLLLDTDLNPEQYEFT 1079

Query: 409  GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLE 467
             ++ SSGD +L +INDILD SK+ESG   L+   F  R  ++  L   AA+   K L L 
Sbjct: 1080 EIIRSSGDNLLTIINDILDFSKIESGRFSLDIQPFNLRHCIEESLDLLAATASAKGLELA 1139

Query: 468  GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK 504
              +  DVP  ++ DV R+RQ+L NL SNA+KFT  G+
Sbjct: 1140 YCMDVDVPELILSDVTRLRQVLVNLFSNAVKFTSNGE 1176


>gi|333923713|ref|YP_004497293.1| multi-sensor hybrid histidine kinase [Desulfotomaculum
           carboxydivorans CO-1-SRB]
 gi|333749274|gb|AEF94381.1| multi-sensor hybrid histidine kinase [Desulfotomaculum
           carboxydivorans CO-1-SRB]
          Length = 1274

 Score =  150 bits (380), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 146/310 (47%), Gaps = 70/310 (22%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ G++  AEIL  T L+ +Q + + ++   G+ +L LINDILDLSK+
Sbjct: 546 EFLANMSHEIRTPMNGILGFAEILLQTNLNSQQEESVRIIQQCGENLLDLINDILDLSKI 605

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG M LE   F  R+++   +      L +K + ++  I  D+P    GD  RIRQ+L 
Sbjct: 606 ESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISIQKDLPDYFKGDPTRIRQVLN 665

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+SNA K                  F  EG                             
Sbjct: 666 NLLSNAAK------------------FTHEG----------------------------- 678

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
               H +    G +DH  + D  T V                   V DTGIGIP   L  
Sbjct: 679 ----HVEVKVNGQKDHSVETDSFTLV-----------------FSVSDTGIGIPREKLDL 717

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP-YQVSP 669
           +F  + Q      RKYGGTGLGL I + L+ LMGG++TV S+V+ GS F+F +P   V  
Sbjct: 718 IFESFTQADGSTTRKYGGTGLGLTISRSLINLMGGQITVESEVNRGSKFSFSIPGLPVVL 777

Query: 670 IEENSDDPDD 679
           +E N  + +D
Sbjct: 778 VENNYSEEND 787



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 25/157 (15%)

Query: 845  SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
            S S ++ P+ K K    +LLVEDN+ N  + + ++   G+ + +  NG +A+  +   N+
Sbjct: 1039 SISGSDAPDNKNKI-TNVLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEMLNQSNF 1097

Query: 905  DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
            D++LMD+ MPVMDG + TR+IRS E                         +K +PIIA+T
Sbjct: 1098 DIVLMDMQMPVMDGYETTRVIRSDE------------------------RYKSLPIIALT 1133

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            A+A+    E+C A G D +++KPV    L + +++Y 
Sbjct: 1134 AHAMKGDNEKCLAAGCDDYLAKPVKRDILIKTIKKYI 1170


>gi|153869707|ref|ZP_01999246.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp.
           PS]
 gi|152073825|gb|EDN70752.1| sensor histidine kinase/response regulator (hybrid) [Beggiatoa sp.
           PS]
          Length = 1183

 Score =  150 bits (380), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/304 (34%), Positives = 163/304 (53%), Gaps = 27/304 (8%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTK---LDREQRQLLGVMISSGDLVLQLINDILDL 428
           + LA MSHE+R+PL  ++ + +IL++ K   L  +Q +    + S+G  +L LINDILDL
Sbjct: 456 EFLANMSHELRTPLNSLLILGQILADNKAGNLTDKQVEYAKTIHSAGMDLLSLINDILDL 515

Query: 429 SKVESGVMKLEAAKFRPREVV---KHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           SKVE+G M+L        E++   KH  +  A   +K L     +AD++P+ +  D  R+
Sbjct: 516 SKVEAGKMELRFEAVLLTELLDTLKHKFRHVAE--EKSLTFHITLADELPLTLYTDTQRL 573

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
           +QIL NL+SNA KFT EG+V +++  + E     + L        S+    +   + P S
Sbjct: 574 QQILNNLLSNAFKFTSEGEVTLEVNYLVEKSL--QSLSSIRHGLTSSPIGREVPLYAPTS 631

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDED-LEATVWIRCDVYDTGIGIP 604
           +     +G   +K    Y        PG        ++E+ LE T  I   V DTGIGIP
Sbjct: 632 EREEAVSGRAPEKIQTEY--------PG--------IEENFLEPTKIIAFRVTDTGIGIP 675

Query: 605 ENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP 664
           E     +F  + Q     +R++GGTGLGL+I +QL +L+GG L + S+ + GSTF  +LP
Sbjct: 676 EEKQKAIFDAFQQADGTTSRRFGGTGLGLSISRQLAQLLGGELQLESQENQGSTFILLLP 735

Query: 665 YQVS 668
            + S
Sbjct: 736 EKAS 739



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 27/136 (19%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVV--NNGVEAVHAV-QCQNYDLILMDVCMPVMD 917
            K+L+V+D+  N     + ++  G  +++    NG EA+  + +  + D++LMD+ MP MD
Sbjct: 1062 KVLIVDDDIRNTFALMTYLEGEGMEMEIFIGENGKEALTMLDEHPDIDIVLMDIMMPEMD 1121

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +A R IR                            F+++PIIA+TA A+     +C  
Sbjct: 1122 GYEAIRAIRK------------------------QTRFQKLPIIALTAKAMKGDKTKCIE 1157

Query: 978  NGMDSFVSKPVTFQKL 993
             G + ++SKPV  +KL
Sbjct: 1158 AGANDYLSKPVDTEKL 1173


>gi|113911570|gb|ABI48271.1| histidine kinase 1 [Lotus japonicus]
 gi|118140476|emb|CAL18381.1| cytokinin receptor 1 [Lotus japonicus]
 gi|118140478|emb|CAL18382.1| cytokinin receptor 1 [Lotus japonicus]
          Length = 993

 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 157/292 (53%), Gaps = 5/292 (1%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ G++ M  +L  T+L   QR       + G  ++ LIN++LD +K+
Sbjct: 385 QFLATVSHEIRTPMNGILGMLGLLLRTELSSTQRDYAQTAQACGKALIALINEVLDRAKI 444

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LEA  F  R ++  VL   +  S  K L L   ++D VP  V+GD  R RQI+T
Sbjct: 445 EAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVT 504

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAY-QSATDAVKEEKHQPKSQTAS 549
           NL+ N++KFT  G + +K+++  +      G   K + +     D V         +T S
Sbjct: 505 NLVGNSVKFTERGHIFVKVHLAEKRQCTMNG---KCETFLNGGCDDVLHVSGSYNLKTLS 561

Query: 550 DQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALP 609
                 ++   + ++ H  D++     S       +    V +   V DTGIGI  +A  
Sbjct: 562 GYEAADERNSWDNFKHHIADEEFFFDASVKKLASSESYEQVTLMVSVEDTGIGISFSAQD 621

Query: 610 TLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           ++F  ++Q  +  +R YGGTG+GL+I K LVELMGG++   S+   GSTF+F
Sbjct: 622 SIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSF 673



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 7/142 (4%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            KIL+V+DN +N  VA   +K  G  +    +G  A+  +Q   ++D   MD+ MP MDG 
Sbjct: 850  KILVVDDNLVNRRVAAGALKNFGADVKCAASGKAALEMLQYPHDFDACFMDIQMPEMDGF 909

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR IR  E   +    +E+G E     +G  + F  +PI+AMTA+ +  + ++C   G
Sbjct: 910  EATRRIRMMEREASEQLKSESGEE-----NGKKSEF-HMPILAMTADVIHATYDKCLNCG 963

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L + + ++F
Sbjct: 964  MDGYVSKPFEEENLYQAVAKFF 985


>gi|254413786|ref|ZP_05027555.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196179383|gb|EDX74378.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1038

 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/366 (31%), Positives = 169/366 (46%), Gaps = 92/366 (25%)

Query: 345 EEIAVQKAKETEL---NKTI----HITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           E+I  QK  +T L   N+ +     + E+  +AK + LA MSHEIR+P+ GV+ M  +L 
Sbjct: 343 EDITQQKQAQTALEQQNRALKDARQVAEKANKAKSEFLAMMSHEIRTPMNGVIGMTGLLL 402

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
           +T+L  +QR     + +SGD +L +INDILD SK+ESG + LE   F  R+ V+  L   
Sbjct: 403 DTELTPDQRHFAETIRNSGDALLTIINDILDFSKIESGKLDLEEQPFELRDCVEDALDLL 462

Query: 457 AASLQKILMLEGDIADD-VPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
           AA      +  G   D  +P +V GDV R+RQIL NL+SNA+KFT  G++ +        
Sbjct: 463 AAKAAAKKLELGYRFDSHIPDQVRGDVTRVRQILVNLLSNAVKFTEAGEIVV-------- 514

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                              +V   K + ++ +  D N +H                    
Sbjct: 515 -------------------SVTGRKLENEADSHPDSNRYH-------------------- 535

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
                           I+  V DTGIGI    +  LF+ + QV +  +R+YGGTGLGLAI
Sbjct: 536 ----------------IQFAVNDTGIGIAPQRMHRLFKPFSQVDSSTSRQYGGTGLGLAI 579

Query: 636 CKQLVELMGGRLTVTSK------------------VHCGSTFTFILPYQ--VSPIEENSD 675
           CKQL  +MGG + V S                      GSTF F++  +     + +  D
Sbjct: 580 CKQLSAMMGGTMWVESHGTVAGNPPAGWQLSAEQPSESGSTFYFMITVESVAGAVAQRVD 639

Query: 676 DPDDLS 681
            P  LS
Sbjct: 640 SPSCLS 645



 Score =  103 bits (256), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 82/142 (57%), Gaps = 23/142 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN +N ++A  +++++G+  DVV++G+EA+ A+  Q YD++ MDV MP MDGL+
Sbjct: 793  RILVAEDNLVNQLLAVRLLQRMGYRADVVSDGLEALEALHRQPYDMVFMDVQMPHMDGLE 852

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ I        W+AA                   R  IIAMTANA+    +EC   GM
Sbjct: 853  ATQRI-----CQTWNAAT------------------RPRIIAMTANAMESDRQECLKAGM 889

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D ++SKP+  ++L   L Q  P
Sbjct: 890  DDYISKPIRVEELVRVLNQSVP 911


>gi|410644220|ref|ZP_11354702.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica NO2]
 gi|410136068|dbj|GAC03101.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica NO2]
          Length = 1172

 Score =  150 bits (379), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 194/418 (46%), Gaps = 70/418 (16%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            + DTGIGI E+    LF K+MQV +   R +GGTGLGLAI KQL EL+GG + V+S+   
Sbjct: 812  IIDTGIGIHEDNQAALFSKFMQVDSSTTRNFGGTGLGLAISKQLSELLGGTVGVSSQWQQ 871

Query: 656  GSTFTFILPYQVSPIEENSDDP--DDLSDMADQDSVTDD---VTAGFFQFQPRTLGSLFS 710
            GSTF F +  +       +  P   +L D + Q  V DD   ++A   Q+       ++ 
Sbjct: 872  GSTFWFTIALEAFSRGHGTSTPWFPEL-DRSLQVLVVDDNPTLSAILGQWLTTQNIQVYQ 930

Query: 711  SNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE 770
            +   S + K L      +SA       +T  S P  N  + T  +      A++   L  
Sbjct: 931  AQNASLALKRLREQ-QLSSAKIDVALIDT--SLPGINGIELTKAIRSNDQFAKLHVILMT 987

Query: 771  PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKI 830
            P            ET  +      V   +    PA+   + S A         +N P K 
Sbjct: 988  PHDWL--------ETGTANQLSGPVSYIAKPVKPASLGAAFSGA-------LSSNSPAK- 1031

Query: 831  CEMQEKPD-----RISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHS 885
              +QE+PD     +  Q+P+                ILLVEDN IN  V   M+K+L  S
Sbjct: 1032 -AVQEEPDVKLLNKYFQTPN----------------ILLVEDNFINQQVVIEMLKKLHCS 1074

Query: 886  IDVVNNGVEAVHAVQ--CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIE 943
            + V  NG EA+H ++   + +DLILMD  MP+MDG +A+R IR                 
Sbjct: 1075 VQVAENGQEAIHTLEDADKGFDLILMDCQMPIMDGYEASRKIR----------------- 1117

Query: 944  QAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                ++  SN+   +PIIA+TANA+    E C + GM++++SKP+   +LK  L+++ 
Sbjct: 1118 ----NNLHSNYASTLPIIALTANAMKGDREACLSAGMNAYLSKPIILAELKTELQKWL 1171



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 100/157 (63%), Gaps = 2/157 (1%)

Query: 355 TELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
           TE+ K     +E  R K + LA MSHEIR+P+ G+V M ++L  T+L ++QR    ++ S
Sbjct: 644 TEMKKAEEQAKEASRTKSEFLANMSHEIRTPINGIVGMNDLLLATELTKKQRHFAELVHS 703

Query: 414 SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIAD 472
           S + +L LINDILD SK+E+G + +E+  F    ++ +++ T A+ + QK L L  D+  
Sbjct: 704 SSESLLLLINDILDFSKIEAGKLSIESIDFDLHLLLGNIIDTFASRAQQKGLELIFDLHP 763

Query: 473 DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           DVP  +  D  RIRQ+L NL+ NAIKFT  G++ +++
Sbjct: 764 DVPQWIASDPGRIRQVLNNLLGNAIKFTHHGEIVLRI 800


>gi|300865281|ref|ZP_07110095.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300336754|emb|CBN55245.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 963

 Score =  150 bits (379), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 118/361 (32%), Positives = 196/361 (54%), Gaps = 49/361 (13%)

Query: 311 EPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRA 370
           EPV ++ G+   +  + MD++D  RK+        EIAVQKAKE          ++  RA
Sbjct: 387 EPVLNQQGQVQKLLIIMMDISD--RKQA-------EIAVQKAKEA--------ADKANRA 429

Query: 371 K-QMLATMSHEIRSPLTGVVSMAEILS-NTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           K + L+ MSHE+R+PL  ++   ++L+ ++ L  EQ++ LG++  SG+ +L LIN+IL +
Sbjct: 430 KSEFLSNMSHELRTPLNAILGFTQLLARDSSLKFEQKEHLGIISRSGEHLLNLINNILQM 489

Query: 429 SKVESGVMKLEAAKF---RPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           SK+E G + +    F   R  E ++ + Q  A   +K L L  DIA D+P  V  D  ++
Sbjct: 490 SKIEVGQVTVNKNNFDLYRLLESIEKMFQLQAE--KKNLQLIIDIAPDLPQYVQTDESKL 547

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATD--AVKEEKH-- 541
           RQ L N++ NAIKFT EG V +++ +       +E +K+K     S  D   VK+ K   
Sbjct: 548 RQTLINILGNAIKFTQEGGVTLRVRM------KEEAIKKKEDERISQKDNFPVKQLKSID 601

Query: 542 -QPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTG 600
            +P  + A +Q   ++ +  E  ++ K            NS+    +++ +++ ++ DTG
Sbjct: 602 LEP-IEIAKNQEKIYNWELTESTKNIK------------NSLCFSDDSSFFLQFEIEDTG 648

Query: 601 IGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFT 660
           +GI    +  LF+ ++Q  +   +   GTGLGL I +Q V+LMGG +TV S ++ GS F 
Sbjct: 649 LGIAPEEIDNLFKPFVQTESG-MKAQEGTGLGLPISRQFVQLMGGDITVNSDINKGSIFK 707

Query: 661 F 661
           F
Sbjct: 708 F 708



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 28/147 (19%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            +P+ +IL V+D   + ++   ++  LG  +    NG  AV         LILMD+ MPVM
Sbjct: 736  QPEYRILAVDDRIESRLLLVRLLTSLGFCVRAAENGAVAVDLWSSWEPHLILMDMRMPVM 795

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK--RIPIIAMTANALSESAEE 974
            DG +AT+ I++                          H K     IIA+TA+A  E    
Sbjct: 796  DGYEATKRIKA--------------------------HLKGQATVIIALTASAFDEERSI 829

Query: 975  CFANGMDSFVSKPVTFQKLKECLEQYF 1001
              + G D FV+KP   Q + E + +Y 
Sbjct: 830  ILSTGCDDFVAKPFREQVILEKMAKYL 856


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
            cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score =  150 bits (379), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 199/416 (47%), Gaps = 71/416 (17%)

Query: 595  DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
            +V DTGIGIP   L  +F  + Q  +   RKYGGTGLGLAIC+QLV+LMGG L V + + 
Sbjct: 428  EVRDTGIGIPLEFLARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDLGVENNLD 487

Query: 655  CGSTFTFILPYQVSPIEENSDDPDDLSDMAD-QDSVTDDVTAGFFQFQPRTLGSLFSSNG 713
             GS F F +P +   + +      + +++A  +  + +D T        R LG  FSS G
Sbjct: 488  KGSLFWFTVPLEEMIMPQAGQALTNKAEVAGLRLLIVEDSTV-----SRRFLGQTFSSWG 542

Query: 714  T--------SRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVA 765
                      ++ K+L +++    ++ +    E +          +   LE A  +AE +
Sbjct: 543  MYHGCAENGQQALKMLRSAVAEGRSYDLVLVDENT---------PDLKGLELAQQIAEDS 593

Query: 766  ETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTN 825
               S           P ++     G        ++   P  +S+ ++             
Sbjct: 594  LIASVKIILMGRQRHPVSDISPLSG------VVNYVAKPVQQSSLYNTI----------- 636

Query: 826  EPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHS 885
                I  +++  + +S++ S   A + ET+   + ++L+VEDN++N  VA  M+++LG  
Sbjct: 637  ----ITAVKQNKEVVSETLS---AAIEETEFSDR-RVLVVEDNRVNQQVAVGMLERLGCR 688

Query: 886  IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945
            ++VV+NG EA+ A+  + Y+L+LMD  MP MDG +ATR IR            EAG +Q 
Sbjct: 689  VEVVSNGQEALDAMSGKVYELVLMDCHMPQMDGYEATRQIR----------IREAGKKQ- 737

Query: 946  MPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                        +PIIAMTAN     +++C + GM+ ++ KP+    L++ L  + 
Sbjct: 738  ------------VPIIAMTANVRKGDSDKCISAGMNDYLPKPLRLSVLRDKLRHWL 781



 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/168 (42%), Positives = 109/168 (64%), Gaps = 2/168 (1%)

Query: 347 IAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQR 405
           + V +A+E EL K      E+ R K +  A++SHE+R+PL GV+ M E+LSNT+L   QR
Sbjct: 249 MTVLEAREQELKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLELLSNTELTPNQR 308

Query: 406 QLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KIL 464
           + + V   SG+ +L LI +ILD S++ESG  KL++  F  +E +  V+   AA  Q K L
Sbjct: 309 EYVQVACGSGETLLDLIGNILDFSRIESGKFKLDSVDFYLQETLDDVIGLLAAQAQRKDL 368

Query: 465 MLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            +   +A++VP+ + GD  RIRQIL NL+ NA+KFT +G+V I++ ++
Sbjct: 369 EIGYVVAENVPLFMRGDATRIRQILINLMGNAVKFTEQGEVSIEVRLL 416



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 24/157 (15%)

Query: 839  RISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
            R  Q  + S  EV     + K ++L+V+D++   M  ++++++ G+ ID V NG +A+  
Sbjct: 904  RALQQENESGKEVCLFNNRKKSRVLIVDDDRTMRMALRNVLEKGGYWIDEVINGSQALAF 963

Query: 899  VQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
             + Q  DL+LMD  MPV+DG  A   IR                   +P S      K  
Sbjct: 964  CKQQMPDLVLMDAVMPVLDGFNACAQIRD------------------LPGS------KHT 999

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKE 995
            P++ +TA     S E  F+ G   ++ KPV F  L++
Sbjct: 1000 PVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLQK 1036


>gi|262195410|ref|YP_003266619.1| ATP-binding protein [Haliangium ochraceum DSM 14365]
 gi|262078757|gb|ACY14726.1| ATP-binding region ATPase domain protein [Haliangium ochraceum DSM
            14365]
          Length = 1922

 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 195/382 (51%), Gaps = 48/382 (12%)

Query: 318  GETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETE-------LNKTIHITEETMRA 370
            GE IG+ Y+  ++ +      ++ ++ + +A Q A   E       L  +  + E   RA
Sbjct: 1438 GELIGLVYLENNLVENAFTAARV-QIVQMLAAQAAISIENARLLRSLEHSKELAERANRA 1496

Query: 371  KQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLS 429
            K   LA+++HE+R+P+ G++ M E+L  T+ D  QR  L    ++ D ++ +I D LDLS
Sbjct: 1497 KSDFLASVNHELRTPMNGIIGMIELLLGTRTDATQRDYLETARTAADQLMGIIRDTLDLS 1556

Query: 430  KVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQI 488
            ++E+G ++LE A F+ RE +  +L+T    +Q K L +  ++AD+VP E++GD  R+ Q+
Sbjct: 1557 RIEAGKLELELAPFQLRECLDSLLRTIGPRVQAKGLDMRLELADEVPDELVGDRGRLLQV 1616

Query: 489  LTNLISNAIKFT-PEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQT 547
            L NL+ NA+KFT P G + +++  +P P                  D+  EE     S+ 
Sbjct: 1617 LLNLLGNAVKFTDPGGTISLRVLALPAP---------------EPEDSTGEE-----SRD 1656

Query: 548  ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
            ++  +G       E   +   D DPG       ++       + +   V DTG GI   A
Sbjct: 1657 SAGADGDASADGDEAGDNAASDRDPGRSRRRVPTL-------LRLNFRVCDTGEGISREA 1709

Query: 608  LPTLFRKYMQVSADHAR-KYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
               +F  +MQ  +++A  K  G+GLGLAI  QLV LMGG L+V S++  GS FTF   + 
Sbjct: 1710 QELIFEPFMQAESNNASAKREGSGLGLAISSQLVGLMGGTLSVESELGAGSCFTFTACFD 1769

Query: 667  VSPIEE--------NSDDPDDL 680
              P+E           DD D+L
Sbjct: 1770 -RPVEHELGGAVKGGEDDADEL 1790



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 76/137 (55%), Gaps = 22/137 (16%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            P   IL+ EDN IN +V   ++++ GHS  + N+G EAV   +  ++DLILMDV MP +D
Sbjct: 1792 PPLNILIAEDNTINQLVVTRLLQREGHSCVIANDGAEAVRKSESGDFDLILMDVRMPRLD 1851

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G  ATR IR  E+  +                      +R+ IIA+TA+A +E    C A
Sbjct: 1852 GHAATRQIRKREEGTD----------------------RRLHIIALTASATTEIVGACTA 1889

Query: 978  NGMDSFVSKPVTFQKLK 994
            +GMD ++SKP+  + L+
Sbjct: 1890 SGMDDYLSKPLRMELLR 1906


>gi|88714407|gb|ABD49495.1| cytokinin receptor 2 [Physcomitrella patens]
          Length = 1082

 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 161/310 (51%), Gaps = 20/310 (6%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M  +L+NT+L+  Q       ++SG  ++ LIN++LD +K+
Sbjct: 423 QFLATVSHEIRTPMNGVLGMLNMLTNTRLNPAQLDYARTALASGKALINLINEVLDQAKI 482

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LE   F  R ++  VL      S    + L   ++  VP  ++GD  R RQI+T
Sbjct: 483 ESGRVELEHVPFDLRAILDDVLSLFHGQSRDSGIELAVYVSAKVPKILVGDPGRFRQIIT 542

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT  G + + +++  +     +G + +      A D +  E       T  D
Sbjct: 543 NLVGNSIKFTEAGHIFVCVHLNEDVNNLMDGDEGE------ADDTLDGEVESAGPLT--D 594

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPV-----SHGNSMDE------DLEATVWIRCDVYDT 599
            N   +   G    D+++  +    +     SH + +D+      DL   V +   V DT
Sbjct: 595 MNYRFNTLSGRETADYRNSWEMFERLLAQEKSHRSGVDQDTRNYCDLNGAVNLVISVEDT 654

Query: 600 GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTF 659
           G+GIP +    +F  +MQ  +  +R YGGTG+GL+I + LV+LM G +   S    GSTF
Sbjct: 655 GVGIPLHVQDRVFMPFMQADSSTSRNYGGTGIGLSISRSLVDLMSGEMEFVSHPKVGSTF 714

Query: 660 TFILPYQVSP 669
           TF    Q  P
Sbjct: 715 TFTAELQRVP 724



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 80/144 (55%), Gaps = 13/144 (9%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA   + + G  +D VN+G  A+ +++   NYD   MDV MP MDG 
Sbjct: 945  RILVVDDNPVNRKVAAGALNKYGAQVDCVNSGRAAIQSLKPPHNYDACFMDVQMPEMDGF 1004

Query: 920  KATRLIRSFEDTG--NWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            +ATRLIR  E     NW A           S G   H   +PI+AMTA+ +  ++EEC  
Sbjct: 1005 EATRLIRKAEAAAVDNWQAGR-------FSSFGRRLH---VPILAMTADVIQATSEECMR 1054

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             GMD +V+KP     L + + ++F
Sbjct: 1055 CGMDGYVAKPFDEHHLYQAVAKHF 1078


>gi|168046338|ref|XP_001775631.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens
           subsp. patens]
 gi|162673049|gb|EDQ59578.1| cytokinin receptor AtAHK4-like protein [Physcomitrella patens
           subsp. patens]
          Length = 1008

 Score =  150 bits (378), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 161/310 (51%), Gaps = 20/310 (6%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M  +L+NT+L+  Q       ++SG  ++ LIN++LD +K+
Sbjct: 388 QFLATVSHEIRTPMNGVLGMLNMLTNTRLNPAQLDYARTALASGKALINLINEVLDQAKI 447

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LE   F  R ++  VL      S    + L   ++  VP  ++GD  R RQI+T
Sbjct: 448 ESGRVELEHVPFDLRAILDDVLSLFHGQSRDSGIELAVYVSAKVPKILVGDPGRFRQIIT 507

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NL+ N+IKFT  G + + +++  +     +G + +      A D +  E       T  D
Sbjct: 508 NLVGNSIKFTEAGHIFVCVHLNEDVNNLMDGDEGE------ADDTLDGEVESAGPLT--D 559

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPV-----SHGNSMDE------DLEATVWIRCDVYDT 599
            N   +   G    D+++  +    +     SH + +D+      DL   V +   V DT
Sbjct: 560 MNYRFNTLSGRETADYRNSWEMFERLLAQEKSHRSGVDQDTRNYCDLNGAVNLVISVEDT 619

Query: 600 GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTF 659
           G+GIP +    +F  +MQ  +  +R YGGTG+GL+I + LV+LM G +   S    GSTF
Sbjct: 620 GVGIPLHVQDRVFMPFMQADSSTSRNYGGTGIGLSISRSLVDLMSGEMEFVSHPKVGSTF 679

Query: 660 TFILPYQVSP 669
           TF    Q  P
Sbjct: 680 TFTAELQRVP 689



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 80/144 (55%), Gaps = 13/144 (9%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA   + + G  +D VN+G  A+ +++   NYD   MDV MP MDG 
Sbjct: 871  RILVVDDNPVNRKVAAGALNKYGAQVDCVNSGRAAIQSLKPPHNYDACFMDVQMPEMDGF 930

Query: 920  KATRLIRSFEDTG--NWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            +ATRLIR  E     NW A           S G   H   +PI+AMTA+ +  ++EEC  
Sbjct: 931  EATRLIRKAEAAAVDNWQAGR-------FSSFGRRLH---VPILAMTADVIQATSEECMR 980

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             GMD +V+KP     L + + ++F
Sbjct: 981  CGMDGYVAKPFDEHHLYQAVAKHF 1004


>gi|42524006|ref|NP_969386.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576214|emb|CAE80379.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 603

 Score =  149 bits (377), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 210/455 (46%), Gaps = 102/455 (22%)

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSL---HEEDILGKTDVEIFSGAGV 273
           L+     L   LQ++P ++  +D + RY  +   F +L      +++GKTD +IF     
Sbjct: 240 LRYQQFLLRMFLQSSPAIVYVKDLQGRYLLVSPTFENLVGKRSVELVGKTDAQIFGVEDA 299

Query: 274 KESQDFKREVLEKGLPAKRE--ITFETELFGS-KTFLIYVEPVFSKSGETIGVNYMGMDV 330
           +   D   +++++  P   E  +TF     GS K +L    P+  + G  I +  +  D+
Sbjct: 300 RRFSDSDNQLIQEQQPRSYEEKLTFHD---GSQKYYLSEKFPLRDEDGHLIAIAGVSTDI 356

Query: 331 TDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVV 389
           T+  R ++++         ++AKE          E   RAK + LA MSHEIR+P+  ++
Sbjct: 357 TELHRYQQEL---------ERAKEA--------AEAGTRAKSEFLANMSHEIRTPMNSIM 399

Query: 390 SMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449
            M+E+L +T+L  +QRQ + ++  +   +L LINDILDLSK+ESG+M +E   F  RE V
Sbjct: 400 GMSELLLDTELSPDQRQFVTILTRASSSLLNLINDILDLSKIESGLMVIEKVPFSVRESV 459

Query: 450 KHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           +  L+                           +L IR +             E K+ +KL
Sbjct: 460 RRALE---------------------------LLMIRAV-------------EKKLDLKL 479

Query: 510 YVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHD 569
            + P+ P  ++ L   ++  Q   + +               NG     HGE     K  
Sbjct: 480 EIDPQVP--EKILGDATRFQQVLINLIG--------------NGLKFTTHGEVRVQLK-- 521

Query: 570 DDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGT 629
                   +G+ +        W+   V DTGIG+    +  LF ++ Q  +   R++GGT
Sbjct: 522 -------VNGHQL--------WV--GVKDTGIGMAPEQMQGLFTRFSQGDSSITRRFGGT 564

Query: 630 GLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP 664
           GLGL+I KQLVE MGG + VTS++  GS F F LP
Sbjct: 565 GLGLSISKQLVEKMGGTIGVTSEIGQGSVFYFTLP 599


>gi|297805122|ref|XP_002870445.1| hypothetical protein ARALYDRAFT_493633 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316281|gb|EFH46704.1| hypothetical protein ARALYDRAFT_493633 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1176

 Score =  149 bits (377), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/298 (35%), Positives = 164/298 (55%), Gaps = 26/298 (8%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T LD +Q         SG  +  LIN++LD +K+
Sbjct: 591 QFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQAKI 650

Query: 432 ESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           ESG ++LE   F  R ++ +V  L +  A+ +K + L   ++  VP  V+GD  R RQI+
Sbjct: 651 ESGRLELENVPFDMRFILDNVSSLLSGKAN-EKGIELAVYVSSQVPDVVVGDPSRFRQII 709

Query: 490 TNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAV-KEEKHQPKSQT 547
           TNL+ N+IKFT E G + I +++  E    +E L        +  DAV K+      S++
Sbjct: 710 TNLVGNSIKFTQERGHIFISVHLAAE---VREPL--------NIEDAVLKQRLALGCSES 758

Query: 548 ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
               +GF        +++ K      T  S  N   + ++  V     V DTG+GIP +A
Sbjct: 759 GETVSGFPAVNAWGSWKNFK------TCYSTENHNSDKIKLLV----TVEDTGVGIPVDA 808

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
              +F  +MQ  +  +R YGGTG+GL+I K+LVELM G +   S+   GSTF+F + +
Sbjct: 809 QGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSFTVVF 866



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA+  +K+ G  +  V +G  A+  ++   N+D   MD+ MP MDG 
Sbjct: 1036 QILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGF 1095

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR +R  E   N    A   +   M    SS H   +PI+AMTA+ +  + EEC   G
Sbjct: 1096 EATRRVRDLEREIN-KKIASGEVSAEMFCKFSSWH---VPILAMTADVIQATHEECMKCG 1151

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L   + ++F
Sbjct: 1152 MDGYVSKPFEEEVLYTAVARFF 1173


>gi|108710768|gb|ABF98563.1| cytokinin receptor CRE1b, putative, expressed [Oryza sativa
           Japonica Group]
          Length = 1013

 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 166/302 (54%), Gaps = 21/302 (6%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T+L   QR         G  ++ LIN++LD +K+
Sbjct: 385 QFLATVSHEIRTPMNGVLGMLDMLLDTELKSTQRDYAQTAQVCGKALISLINEVLDRAKI 444

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + LE+  F  R ++  V+   ++ S +K + L   +++ VP  ++GD  R RQI+T
Sbjct: 445 EAGKIDLESVPFDLRSILDDVISLFSSKSREKGIELAVYVSERVPEILLGDPGRFRQIIT 504

Query: 491 NLISNAIK--------FTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ 542
           NL+ N+IK        FT  G + +++++      A E    K +   +  +  K+E   
Sbjct: 505 NLVGNSIKITIFTLSQFTERGHIFVQVHLADHSNLATEA---KIEPVVNGMNGHKDEAIA 561

Query: 543 -PKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSH-GNSMDEDLEA-TVWIRCDVYDT 599
            P S + +  +GF        +++ K        +S+  N M  + ++  V +   V DT
Sbjct: 562 IPTSGSHNTLSGFEAADSRNNWENFK------LLLSYEKNEMPYESDSDKVTLVVSVEDT 615

Query: 600 GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTF 659
           GIGIP +A   +F  +MQ  +  +R YGGTG+GL+I K LVE+MGG++   S+   GSTF
Sbjct: 616 GIGIPLHAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVEIMGGQINFVSRPLVGSTF 675

Query: 660 TF 661
           TF
Sbjct: 676 TF 677



 Score = 96.7 bits (239), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 7/142 (4%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DNK+N+ VA   +K+ G  ++ V +G +A+  +Q    +DL LMD+ MP MDG +
Sbjct: 871  ILVVDDNKVNLRVAAGTLKKYGAKVECVESGKDALSLLQVPHKFDLCLMDIQMPEMDGFE 930

Query: 921  ATRLIRSFEDTGNWDAA-AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            ATR IR+ E   N  A  +E+G E A  ++        +PI+AMTA+ +  + EEC   G
Sbjct: 931  ATRQIRAMEGKANEQADDSESGSEIAAKTAK-----WHLPILAMTADVIQATHEECTKCG 985

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   ++L + ++++ 
Sbjct: 986  MDGYVSKPFEEKQLFQAVQKFL 1007


>gi|423692199|ref|ZP_17666719.1| sensor protein GacS [Pseudomonas fluorescens SS101]
 gi|387998708|gb|EIK60037.1| sensor protein GacS [Pseudomonas fluorescens SS101]
          Length = 917

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 166/647 (25%), Positives = 268/647 (41%), Gaps = 165/647 (25%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            + LA MSHEIR+PL G++    +L  ++L   Q   LG +  S D +L +IN+ILD SK 
Sbjct: 287  EFLANMSHEIRTPLNGILGFTHLLQKSELSPRQLDYLGTIEKSADNLLGIINEILDFSK- 345

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
                  +EA K         VL +   +L+       D+  D  + ++      +Q+   
Sbjct: 346  ------IEAGKL--------VLDSVPFNLR-------DLLQDT-LTILAPAAHAKQL--E 381

Query: 492  LISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQ 551
            L+S   + TP   VG             + L+ K       ++A+K  +           
Sbjct: 382  LVSLVYRDTPLALVG-------------DPLRLKQILTNLISNAIKFTRE---------- 418

Query: 552  NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTL 611
                                 GT V+     DE  E +V +R  V DTGIG+    +  L
Sbjct: 419  ---------------------GTIVARAMIEDEQ-EDSVQLRISVQDTGIGLSNQDVRAL 456

Query: 612  FRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIE 671
            F+ + Q     +R+ GGTGLGL I K+L+E MGG + V S    GS F   L      + 
Sbjct: 457  FQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISL-----NLP 511

Query: 672  ENSDDPDDLSD---MADQDSVTDD--VTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIG 726
            +  DD +DL     +  + +V ++  +     Q Q    G   +   T  S   L N  G
Sbjct: 512  KTRDDVEDLPAAPLLGRRVAVLENHELARQALQHQLEDCGLEVTPFNTLES---LTN--G 566

Query: 727  FASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE--PESSFSHSPEPENE 784
              SAH+                       E A S+A +  T ++  PE    H  + E  
Sbjct: 567  ITSAHQT----------------------EQAISLAVLGVTANDIPPERLNQHLWDLE-- 602

Query: 785  TEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKP------- 837
                     H+        P TE         +M+       P    ++Q KP       
Sbjct: 603  ---------HLGCKVLVLCPTTE---------QMLFNQSVPNPNS--QLQAKPACTRKLR 642

Query: 838  ----DRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV 893
                D IS  PS S  E  E      P++L V+DN  N+++ +++++ +G  +  V +G 
Sbjct: 643  RSLADLISPRPSRS--EPGEPLSSRAPRVLCVDDNPANLLLVQTLLEDMGAKVQAVESGY 700

Query: 894  EAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
             AV AV+ + +DL+LMDV MP MDG ++T  IR +E                     S  
Sbjct: 701  AAVDAVKQETFDLVLMDVQMPGMDGRQSTEAIRQWE---------------------SER 739

Query: 954  HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            H   +P++A+TA+A++        +GMD +++KP++ ++L + + ++
Sbjct: 740  HGTPLPVVALTAHAMANEKRALLQSGMDDYLTKPISERQLAQVVLKW 786


>gi|387894329|ref|YP_006324626.1| sensor protein GacS [Pseudomonas fluorescens A506]
 gi|387163181|gb|AFJ58380.1| sensor protein GacS [Pseudomonas fluorescens A506]
          Length = 913

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 166/647 (25%), Positives = 268/647 (41%), Gaps = 165/647 (25%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            + LA MSHEIR+PL G++    +L  ++L   Q   LG +  S D +L +IN+ILD SK 
Sbjct: 283  EFLANMSHEIRTPLNGILGFTHLLQKSELSPRQLDYLGTIEKSADNLLGIINEILDFSK- 341

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
                  +EA K         VL +   +L+       D+  D  + ++      +Q+   
Sbjct: 342  ------IEAGKL--------VLDSVPFNLR-------DLLQDT-LTILAPAAHAKQL--E 377

Query: 492  LISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQ 551
            L+S   + TP   VG             + L+ K       ++A+K  +           
Sbjct: 378  LVSLVYRDTPLALVG-------------DPLRLKQILTNLISNAIKFTRE---------- 414

Query: 552  NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTL 611
                                 GT V+     DE  E +V +R  V DTGIG+    +  L
Sbjct: 415  ---------------------GTIVARAMIEDEQ-EDSVQLRISVQDTGIGLSNQDVRAL 452

Query: 612  FRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIE 671
            F+ + Q     +R+ GGTGLGL I K+L+E MGG + V S    GS F   L      + 
Sbjct: 453  FQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISL-----NLP 507

Query: 672  ENSDDPDDLSD---MADQDSVTDD--VTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIG 726
            +  DD +DL     +  + +V ++  +     Q Q    G   +   T  S   L N  G
Sbjct: 508  KTRDDVEDLPAAPLLGRRVAVLENHELARQALQHQLEDCGLEVTPFNTLES---LTN--G 562

Query: 727  FASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE--PESSFSHSPEPENE 784
              SAH+                       E A S+A +  T ++  PE    H  + E  
Sbjct: 563  ITSAHQT----------------------EQAISLAVLGVTANDIPPERLNQHLWDLE-- 598

Query: 785  TEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKP------- 837
                     H+        P TE         +M+       P    ++Q KP       
Sbjct: 599  ---------HLGCKVLVLCPTTE---------QMLFNQSVPNPNS--QLQAKPACTRKLR 638

Query: 838  ----DRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV 893
                D IS  PS S  E  E      P++L V+DN  N+++ +++++ +G  +  V +G 
Sbjct: 639  RSLADLISPRPSRS--EPGEPLSSRAPRVLCVDDNPANLLLVQTLLEDMGAKVQAVESGY 696

Query: 894  EAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
             AV AV+ + +DL+LMDV MP MDG ++T  IR +E                     S  
Sbjct: 697  AAVDAVKQETFDLVLMDVQMPGMDGRQSTEAIRQWE---------------------SER 735

Query: 954  HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            H   +P++A+TA+A++        +GMD +++KP++ ++L + + ++
Sbjct: 736  HGTPLPVVALTAHAMANEKRALLQSGMDDYLTKPISERQLAQVVLKW 782


>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 1499

 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 187/417 (44%), Gaps = 74/417 (17%)

Query: 595  DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
            +V DTGIGIP      +F  + Q  +   RKYGGTGLGLAIC+QLV+LMGG + V SK  
Sbjct: 428  EVKDTGIGIPIEFQKHIFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESKFG 487

Query: 655  CGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAG------FFQFQPRTLGSL 708
             GS F F +P + +   +   D +  +    +  + DD T         F F     GS 
Sbjct: 488  GGSRFWFTVPLEEAVALQERRDLNRANVAGLRLLIVDDSTVSRRFLEQTFSFWGMYHGS- 546

Query: 709  FSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETL 768
             + NG  ++ K+L ++     A+ +    E   + P          + ++  ++ V   L
Sbjct: 547  -AENG-QQALKMLRSAAIQGRAYDLALIDE---NMPGMEGVDLVHRIAESPQISSVKIIL 601

Query: 769  ----SEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKT 824
                 +P    SH P   N                +   P  +S  ++     + Q+ K 
Sbjct: 602  MGRQHQPTVDVSHLPGVVN----------------YIAKPVQQSPLYNAIVTTVKQSGKG 645

Query: 825  NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
                 +  M+E        PS ++             IL+VEDN++N  VA  M+K+ G 
Sbjct: 646  QPELPLAAMEE--------PSFANR-----------YILVVEDNRVNQQVAVGMLKRFGC 686

Query: 885  SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQ 944
             ++V  NG EA+  V  ++YDL+LMD  MP MDG +ATR IRS           EAG  Q
Sbjct: 687  HVEVAANGQEALDLVARKSYDLVLMDCHMPRMDGYEATRRIRSL----------EAGKVQ 736

Query: 945  AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                         +PIIAMTAN     +++C + GM+ ++ KP+    L++ L+ + 
Sbjct: 737  -------------VPIIAMTANVREGDSDKCLSVGMNDYLPKPLRLNLLRDKLQYWL 780



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 105/168 (62%), Gaps = 2/168 (1%)

Query: 347 IAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQR 405
           + V +A+E EL +      E+ R K +  A +SHE+R+PL GV+ M E+L N  L  +QR
Sbjct: 249 MTVLEAREQELKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLELLRNMGLTPKQR 308

Query: 406 QLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KIL 464
           + + V  +SG+ +L+LI +ILD S++ESG  KL+ A F  +E++   +   A   Q K L
Sbjct: 309 EYVQVACNSGETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIGLLAGQAQRKDL 368

Query: 465 MLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            L   +A +VP  + GD  RIRQIL NL+ NA+KFT +G+V +++ ++
Sbjct: 369 DLGYVVAKNVPPSLRGDATRIRQILINLMGNAVKFTEQGEVSVEVQLL 416



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 24/139 (17%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            K   ++L+V+D++   M  ++++++ G+ I+   NG +A+   + Q  DL+LMD  MP++
Sbjct: 922  KRPSRVLIVDDDRAMRMALRNVLEEGGYRIEEAVNGEQALAFCRRQMPDLVLMDAVMPLL 981

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG KA   IR                   MP S      +  P++ +TA     S E+ F
Sbjct: 982  DGFKACTQIRD------------------MPGS------RHTPVLIITALDDEHSIEQAF 1017

Query: 977  ANGMDSFVSKPVTFQKLKE 995
            + G   ++ KP+ F  L++
Sbjct: 1018 SAGATDYIPKPLHFGVLRQ 1036


>gi|388468259|ref|ZP_10142469.1| sensor protein GacS [Pseudomonas synxantha BG33R]
 gi|388011839|gb|EIK73026.1| sensor protein GacS [Pseudomonas synxantha BG33R]
          Length = 917

 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 165/647 (25%), Positives = 268/647 (41%), Gaps = 165/647 (25%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            + LA MSHEIR+PL G++    +L  ++L   Q   LG +  S D +L +IN+ILD SK 
Sbjct: 287  EFLANMSHEIRTPLNGILGFTHLLQKSELSPRQLDYLGTIEKSADNLLGIINEILDFSK- 345

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
                  +EA K         VL +   +L+       D+  D  + ++      +Q+   
Sbjct: 346  ------IEAGKL--------VLDSVPFNLR-------DLLQDT-LTILAPAAHAKQL--E 381

Query: 492  LISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQ 551
            L+S   + TP   VG             + L+ K       ++A+K  +           
Sbjct: 382  LVSLVYRDTPLALVG-------------DPLRLKQILTNLISNAIKFTRE---------- 418

Query: 552  NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTL 611
                                 GT V+     DE  E +V +R  V DTGIG+    +  L
Sbjct: 419  ---------------------GTIVARAMVEDEQ-EDSVQLRISVQDTGIGLSNQDVRAL 456

Query: 612  FRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIE 671
            F+ + Q     +R+ GGTGLGL I K+L+E MGG + V S    GS F   L      + 
Sbjct: 457  FQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISL-----NLP 511

Query: 672  ENSDDPDDLSD---MADQDSVTDD--VTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIG 726
            +  DD +DL     +  + +V ++  +     Q Q    G   +   T  S   L N  G
Sbjct: 512  KTRDDVEDLPAPPLLGRRVAVLENHELARQALQHQLEDCGLEVTPFNTLES---LTN--G 566

Query: 727  FASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE--PESSFSHSPEPENE 784
              SAH+                       E A S+A +  T ++  PE    H  + E  
Sbjct: 567  ITSAHQT----------------------EQAISLAVLGVTANDIPPERLNQHLWDLE-- 602

Query: 785  TEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKP------- 837
                     H+        P TE         +M+       P    ++Q KP       
Sbjct: 603  ---------HLGCKVLVLCPTTE---------QMLFNQSVPNPNS--QLQAKPACTRKLR 642

Query: 838  ----DRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV 893
                D IS  PS S  E  E      P++L V+DN  N+++ +++++ +G  +  V +G 
Sbjct: 643  RSLADLISPRPSRS--EPGEPLSSRAPRVLCVDDNPANLLLVQTLLEDMGAKVQAVESGY 700

Query: 894  EAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
             A+ AV+ + +DL+LMDV MP MDG ++T  IR +E                     S  
Sbjct: 701  AAIDAVKQETFDLVLMDVQMPGMDGRQSTEAIRQWE---------------------SER 739

Query: 954  HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            H   +P++A+TA+A++        +GMD +++KP++ ++L + + ++
Sbjct: 740  HGTPLPVVALTAHAMANEKRALLQSGMDDYLTKPISERQLAQVVLKW 786


>gi|73537902|ref|YP_298269.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72121239|gb|AAZ63425.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 1284

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/427 (28%), Positives = 193/427 (45%), Gaps = 69/427 (16%)

Query: 584  EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
            E  E+ V +  +V DTGIGI  +A+P LFR + Q  +   R+YGG+GLGLAI  +LV L 
Sbjct: 678  EHAESRVRLHFEVRDTGIGIDADAIPRLFRSFEQADSSTTRRYGGSGLGLAISHRLVTLT 737

Query: 644  GGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDL--SDMADQDS-VTDDVTAGFFQF 700
            GG + V S++  GSTF     +++S +      P  L   ++A +   V DD       +
Sbjct: 738  GGTIGVQSELGKGSTFW----FELSLLPGTRRAPALLVQPELAGRRLLVVDD-----HGY 788

Query: 701  QPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACS 760
              + +GS+    G  R+ ++       ++    +  ++  ++   + R      ++    
Sbjct: 789  ARQVIGSMLRGFGF-RADEVESGEKALSAIQHADAIADPYHAVFIDWRMPGLDGIQTVRK 847

Query: 761  VAEVAETLSEPESSFSHSPEP------ENETEVSRGKQCHVETTSWFQNPATESTSHSEA 814
            +A +        S  S  P P        E  V  G++   ETT     P + S      
Sbjct: 848  LAAM--------SLQSQRPRPLMITANGREEVVREGERNGFETT--LHKPVSPSVLFDAT 897

Query: 815  NREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMV 874
             R +      +EP ++ +  +   R    PS +          P  ++LLVEDN+IN  V
Sbjct: 898  MRVL-----ASEPGRMAD--KGAPRSVTGPSWT---------LPHARVLLVEDNEINREV 941

Query: 875  AKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNW 934
            A  +++Q G + D   NG  A+  +  Q+YDL+LMD+ MPVMDG +ATR IR        
Sbjct: 942  ATHLLQQAGITPDTAENGAIALELLAVQDYDLVLMDMQMPVMDGFEATRHIR-------- 993

Query: 935  DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLK 994
                            ++     +P++AMTANAL E    C A GMD  ++KP++     
Sbjct: 994  ----------------ANPRLASMPVVAMTANALPEDRNRCLAAGMDDHIAKPISPATFF 1037

Query: 995  ECLEQYF 1001
              L ++ 
Sbjct: 1038 TTLHRWL 1044



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/313 (32%), Positives = 165/313 (52%), Gaps = 26/313 (8%)

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKE---LRYRFIYNHFPSLHEEDILGKTDVEI-FSGAG 272
           L +++  L  +L ++P +M  +D+    L+          L  + +LGKTD E+     G
Sbjct: 366 LAQSEERLRALLDHSPAIMHLKDRNHAFLQLNPSMEKLLGLTRDQVLGKTDRELAVMPDG 425

Query: 273 VKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFS-KSGETIGVNYMGMDVT 331
            +E  + +  V+  G  A+ +I       GS+   +   PV    S   +GV  +G+D+T
Sbjct: 426 TRERWEIEARVMATG-RAEEQIYAMEAPEGSRQLRVIRFPVHDPTSNAVVGVGAVGIDIT 484

Query: 332 DQVRKREKMAKLRE-----------EIAVQKAKETELNKTIHITEETMRAK-QMLATMSH 379
           DQ R   ++ ++ +           E+AV  A   EL K  H  E   +AK   LA MSH
Sbjct: 485 DQERANRELKEMSQTLEHKVWERTRELAVANA---ELAKAKHEAESAAQAKASFLANMSH 541

Query: 380 EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
           EIR+P+  V+ MA +  +T+LD +QR  +  +  SG  +L ++NDILDLSK+E+G +++E
Sbjct: 542 EIRTPMNAVIGMAHLALSTQLDPQQRDYVEKIQRSGQHLLGILNDILDLSKIEAGKLEIE 601

Query: 440 AAKF---RPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA 496
              F   R    V  ++   AA+ Q  L++  D+  DVP  + GD LRIRQ+L N  +NA
Sbjct: 602 QIDFSLERLLRTVGDLVSERAAAKQLELVV--DVQPDVPDSLRGDPLRIRQVLINFTTNA 659

Query: 497 IKFTPEGKVGIKL 509
           +KFT  G++ I++
Sbjct: 660 VKFTERGEIVIRV 672


>gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1727

 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/331 (33%), Positives = 163/331 (49%), Gaps = 57/331 (17%)

Query: 329  DVTDQVRKREKMAKLREEIAVQKAKETELNKTIH----ITEETMRAK-QMLATMSHEIRS 383
            DV  QV      AKL E     + +  + NK +       E   RAK + LATMSHEIR+
Sbjct: 941  DVASQVGLTLFQAKLLEFEVKSRQQLADKNKALEEARLAAEIASRAKSEFLATMSHEIRT 1000

Query: 384  PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
            P+  V+ M  +L +  L+ EQR  +  + +SGD +L +INDILD SK+ESG ++LE   F
Sbjct: 1001 PMNAVIGMTGLLLDMNLNPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEHQPF 1060

Query: 444  RPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
            + R  ++  L   +A + +K L L   +  + P  ++GDV R+RQ+L NL+SNA+KFT +
Sbjct: 1061 KLRTCIEESLDLLSARASEKGLELAYIVDPNTPEVMVGDVTRLRQVLVNLLSNAVKFTNQ 1120

Query: 503  GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEG 562
            G+V + +            L Q S   QS   + ++ + QP       +  F  K  G  
Sbjct: 1121 GEVIVSV---------TSSLIQDSA--QSLISSEEKNESQPSISPPIYEVQFAVKDTG-- 1167

Query: 563  YQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADH 622
                                                  IGIP + +  LF+ + QV A  
Sbjct: 1168 --------------------------------------IGIPPDRMHRLFKAFSQVDAST 1189

Query: 623  ARKYGGTGLGLAICKQLVELMGGRLTVTSKV 653
             R+YGGTGLGLAI ++L E+MGG++ V S V
Sbjct: 1190 TRQYGGTGLGLAISQRLSEMMGGKMWVVSWV 1220



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 80/142 (56%), Gaps = 18/142 (12%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL EDN  N  VA  ++++LG+  D+  NGVE + A++ Q YD++LMDV MP MDGL+
Sbjct: 1440 RILLAEDNVTNQKVATKLLQRLGYRADIAGNGVEVLDALKRQPYDVVLMDVQMPQMDGLE 1499

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            A+R I             E G        GS    K+  IIAMTANA+    E C   GM
Sbjct: 1500 ASRRI-----------CKEYG-------EGSDGRQKKPWIIAMTANAMRGDREMCLEAGM 1541

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D +V+KPV  ++L + L +  P
Sbjct: 1542 DDYVTKPVRREELAQALAKCQP 1563


>gi|428225220|ref|YP_007109317.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
 gi|427985121|gb|AFY66265.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
          Length = 2144

 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 129/418 (30%), Positives = 191/418 (45%), Gaps = 79/418 (18%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V+DTGIGI  + L  LF+ + QV +   R+YGGTGLGL+I K+L E+MGGR+ V S+V  
Sbjct: 1644 VHDTGIGIHPDQLRHLFQPFSQVDSSMTRRYGGTGLGLSISKRLCEMMGGRVWVESEVGV 1703

Query: 656  GSTFTFILPYQVSPIEENSDD--PDDLSDM-------ADQDSVTDDVTAGFFQFQPRTLG 706
            GSTF F +  Q S  E  S+D   + L  M       AD +  T +  A   Q Q   + 
Sbjct: 1704 GSTFHFTVRLQ-SISEPMSEDVWSNVLPKMKGKRVLVADDNQTTRETIAR--QIQEWEMQ 1760

Query: 707  SLFSSNGTSRSKKLLPNSIGFASAHKVNGFSET--SYSFPSNNRQKETAPLEDACSVAEV 764
               +++G              A  H+++ +      +  PS N        + A  + ++
Sbjct: 1761 VQTAASGAE----------AIAHLHQLSQYDLVILDHQMPSGN------GFDIAAQIRQL 1804

Query: 765  AETLSEPESSFS---HSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQT 821
                  P    S    SP PE   ++          T+    P  +S  + +   ++  T
Sbjct: 1805 PGGQGLPIVVMSTGIESPSPEAIADIG--------VTALLAKPLKQSQFY-DVLAQIFLT 1855

Query: 822  SKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQ 881
             +   PQ+   +    DR+S           E  P     ILLVED  +N  +   M+++
Sbjct: 1856 GQVMLPQRSARLMSG-DRLS-----------EQYPL---HILLVEDVPVNQKLVLQMLQR 1900

Query: 882  LGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAG 941
            LG+  DV NNG EA+ A++ Q YD++LMDV MP MDGL+ATR IR  + T          
Sbjct: 1901 LGYRADVANNGHEAIAALRRQPYDVVLMDVQMPEMDGLEATRWIRRQDPT---------- 1950

Query: 942  IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
                          K   IIAMTA+A+    E C   GM+ ++SKP+  + L + L Q
Sbjct: 1951 ------------LLKDPYIIAMTAHAMQGDRELCLDAGMNDYLSKPIRLEGLVKALRQ 1996



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 107/186 (57%), Gaps = 6/186 (3%)

Query: 326  MGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSP 384
            MG+ +  Q    E+  + REE+    AK   L       +   R+K   LA MSHEIR+P
Sbjct: 1446 MGIALA-QAHLLEQAVEQREELV---AKNAALETAKREADAANRSKSDFLAMMSHEIRTP 1501

Query: 385  LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
            +  V+ MA +L +T+L  +Q   +  + SSG+++L LINDILD SK+ESG + LE  +F 
Sbjct: 1502 MNAVIGMASLLFDTELSPQQMDFVETIRSSGEVLLTLINDILDFSKIESGKLHLEEQRFN 1561

Query: 445  PREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
             R  V+  L   A  + +K L L   IA   P+   GDV R+RQ+L NL+SNAIKFT  G
Sbjct: 1562 LRRCVEDALDLIATQATKKGLELICWIASGTPLHFQGDVTRLRQVLVNLLSNAIKFTQAG 1621

Query: 504  KVGIKL 509
            +V + +
Sbjct: 1622 EVMVSV 1627



 Score = 40.4 bits (93), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 26/148 (17%)

Query: 856  PKPKPK-ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV-HAVQCQNYDLILMDVCM 913
            PK K K +L+ +DN+         +++    +    +G EA+ H  Q   YDL+++D  M
Sbjct: 1730 PKMKGKRVLVADDNQTTRETIARQIQEWEMQVQTAASGAEAIAHLHQLSQYDLVILDHQM 1789

Query: 914  PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE 973
            P  +G                D AA+  I Q     G       +PI+ M+    S S E
Sbjct: 1790 PSGNGF---------------DIAAQ--IRQLPGGQG-------LPIVVMSTGIESPSPE 1825

Query: 974  ECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                 G+ + ++KP+   +  + L Q F
Sbjct: 1826 AIADIGVTALLAKPLKQSQFYDVLAQIF 1853


>gi|18421494|ref|NP_568532.1| histidine kinase 2 [Arabidopsis thaliana]
 gi|75168995|sp|Q9C5U2.1|AHK2_ARATH RecName: Full=Histidine kinase 2; AltName: Full=Arabidopsis
           histidine kinase 2; Short=AtHK2; AltName: Full=Protein
           AUTHENTIC HIS-KINASE 2
 gi|13537196|dbj|BAB40774.1| histidine kinase [Arabidopsis thaliana]
 gi|332006631|gb|AED94014.1| histidine kinase 2 [Arabidopsis thaliana]
          Length = 1176

 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 162/294 (55%), Gaps = 26/294 (8%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T LD +Q         SG  +  LIN++LD +K+
Sbjct: 590 QFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQAKI 649

Query: 432 ESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           ESG ++LE   F  R ++ +V  L +  A+ +K + L   ++  VP  V+GD  R RQI+
Sbjct: 650 ESGRLELENVPFDMRFILDNVSSLLSGKAN-EKGIELAVYVSSQVPDVVVGDPSRFRQII 708

Query: 490 TNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAV-KEEKHQPKSQT 547
           TNL+ N+IKFT E G + I +++  E    KE L        +  DAV K+      S++
Sbjct: 709 TNLVGNSIKFTQERGHIFISVHLADE---VKEPL--------TIEDAVLKQRLALGCSES 757

Query: 548 ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
               +GF        +++ K      T  S  +   + ++  V     V DTG+GIP +A
Sbjct: 758 GETVSGFPAVNAWGSWKNFK------TCYSTESQNSDQIKLLV----TVEDTGVGIPVDA 807

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
              +F  +MQ  +  +R YGGTG+GL+I K+LVELM G +   S+   GSTF+F
Sbjct: 808 QGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSF 861



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA+  +K+ G  +  V +G  A+  ++   N+D   MD+ MP MDG 
Sbjct: 1036 QILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGF 1095

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR +R  E   N    A   +   M    SS H   +PI+AMTA+ +  + EEC   G
Sbjct: 1096 EATRRVRELEREIN-KKIASGEVSAEMFCKFSSWH---VPILAMTADVIQATHEECMKCG 1151

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L   + ++F
Sbjct: 1152 MDGYVSKPFEEEVLYTAVARFF 1173


>gi|426404487|ref|YP_007023458.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           str. Tiberius]
 gi|425861155|gb|AFY02191.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           str. Tiberius]
          Length = 603

 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 128/453 (28%), Positives = 203/453 (44%), Gaps = 98/453 (21%)

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSL---HEEDILGKTDVEIFSGAGV 273
           L+     L   LQ++P ++  +D   RY  +   F  L      D++G+TD EIF     
Sbjct: 240 LRYQQFLLKMFLQSSPAIVYVKDLGGRYLLVSPTFEQLVGKLSADLVGRTDQEIFGVEDA 299

Query: 274 KESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVE-PVFSKSGETIGVNYMGMDVTD 332
           K   D   +++ +  P   E +  T + GS+ + +  + P+  +    I +  +  D+T+
Sbjct: 300 KRFSDSDSQLIAEQRPRSYEESL-TFVDGSQRYYLSEKFPLRDEGDHLIAIAGVSTDITE 358

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
             R ++++         + AKE          E   RAK + LA MSHEIR+P+  ++ M
Sbjct: 359 LHRYQQEL---------ETAKEA--------AEAGTRAKSEFLANMSHEIRTPMNSIMGM 401

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
           +E+L +T+L  +QRQ + ++  +   +L LINDILD+SK+ESG+M +E   F  RE V+ 
Sbjct: 402 SELLLDTELSPDQRQFVTILTRASSNLLNLINDILDISKIESGLMVIEKVPFNVRESVRR 461

Query: 452 VLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
             +        ILM++                                  E K+ +KL +
Sbjct: 462 AFE--------ILMIKA--------------------------------VEKKLDLKLDI 481

Query: 512 VPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDD 571
            P+ P    G    S+  Q   + +               NG     HGE     K  DD
Sbjct: 482 DPQVPEKING--DASRFQQVLINLIG--------------NGLKFTTHGEVRVQMKVSDD 525

Query: 572 PGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGL 631
                             +W+   V DTGIG+  + +  LF ++ Q  +   R++GGTGL
Sbjct: 526 -----------------QLWV--GVKDTGIGMAPDQMQWLFTRFSQGDSSITRRFGGTGL 566

Query: 632 GLAICKQLVELMGGRLTVTSKVHCGSTFTFILP 664
           GL+I KQLVE MGG + VTS++  GS F F LP
Sbjct: 567 GLSISKQLVEKMGGTIGVTSEIGHGSVFYFTLP 599


>gi|374299669|ref|YP_005051308.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1066

 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 132/446 (29%), Positives = 205/446 (45%), Gaps = 98/446 (21%)

Query: 229 QNAPVVMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKE-----SQDFKR-- 281
           +N+P ++    K+L+  ++      LH          + + G  V+E      ++F+R  
Sbjct: 549 ENSPDIIVRIGKDLKRSYVNPAIGRLH------GMSPDHYLGMHVREPARPDREEFRRAY 602

Query: 282 -EVLEKGLPAKREITFE---TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKR 337
            E+L++ L + RE + E   T + G + F   + P F+ SGE + V  +  DVT      
Sbjct: 603 EELLKQVLASGREESHEYSLTTINGLRHFHCRLTPEFAPSGEVVSVLSISRDVTAYKELE 662

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSN 397
           +++ + R E  V    ++E                 LA MSHEIR+P+ G++ M ++   
Sbjct: 663 QELRRARNEAEVANHAKSEF----------------LAAMSHEIRTPMNGIIGMTDLALM 706

Query: 398 TKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA 457
              D +    LG +  S   +L+LINDILDLSKVESG M+LE   F  R+ ++ +LQ   
Sbjct: 707 GGCDSKASSYLGFIKESAHSLLELINDILDLSKVESGRMELEKKAFDLRKSLESLLQPLR 766

Query: 458 ASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
            S Q K + L   +  +VP  ++GD LR+RQ+ TNL+ NA+                   
Sbjct: 767 LSAQRKGVELSWYVGPEVPELLMGDDLRLRQVFTNLVGNAL------------------- 807

Query: 517 FAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPV 576
                   K  ++ S T A+   +                        D +   +PG   
Sbjct: 808 --------KFTSWGSITIAIGVAEAA----------------------DSRKTPEPGA-- 835

Query: 577 SHGNSMDE-DLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
               S +E  L+ATV       DTGIGIP + L  +F  +  +   H ++YGGTGLGLAI
Sbjct: 836 ----SQEEISLQATV------SDTGIGIPPDKLQHVFESFATLG--HDKEYGGTGLGLAI 883

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTF 661
            K+LVE+MGG +   S+   GS F F
Sbjct: 884 TKKLVEIMGGTIWAESQPGQGSVFGF 909



 Score = 89.7 bits (221), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 21/140 (15%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+IN +V +  + ++GH +  V NG +A+  +    +DL+ MD  MP MDG++
Sbjct: 939  RILVAEDNEINQLVMRDWLDEMGHMVICVPNGRKAIDLLSQGRFDLVFMDAQMPEMDGIE 998

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR+IR          +   G++ A            IPI+A+TA AL    E   A GM
Sbjct: 999  ATRIIRR---------SPPQGVDPA------------IPIVALTAYALKGDRERFLAAGM 1037

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D ++SKP+ F++L   L ++
Sbjct: 1038 DDYLSKPLDFEELHRILAEF 1057


>gi|302036411|ref|YP_003796733.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604475|emb|CBK40807.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1340

 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/332 (33%), Positives = 158/332 (47%), Gaps = 81/332 (24%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILS 396
           E   +L  E A+  AKE          E   RAK   LATMSHEIR+P+  +V MA++LS
Sbjct: 689 EAKQRLEAETALMSAKEA--------AEFANRAKSDFLATMSHEIRTPMNAIVGMADLLS 740

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            T L+ +QR+ + +   +G  +L LIND+LDLSK+E+G + L+   F   ++V+   +  
Sbjct: 741 ETPLNEDQREYVQIFRDAGSNLLSLINDVLDLSKIEAGHLDLDLVDFDLNDLVQRAAELV 800

Query: 457 AA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
           A  + +K L L   I  DVP  ++GD  R+RQ+L NL+ NAIK                 
Sbjct: 801 AVRASEKNLELAYQIQPDVPTSLVGDPNRLRQVLLNLLGNAIK----------------- 843

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
            F  EG            + V   +  P++                        D PGT 
Sbjct: 844 -FTDEG------------EVVLRVERDPQA------------------------DGPGT- 865

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
                           I   V DTGIGIP + L  +F ++ QV +   R Y GTGLGL I
Sbjct: 866 ----------------ILFTVRDTGIGIPTDKLAAIFERFTQVDSSTTRPYSGTGLGLTI 909

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            ++LVE MGG++ V S++  GSTF+F   + V
Sbjct: 910 SRRLVERMGGKMWVDSELGRGSTFSFTAKFAV 941



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 22/151 (14%)

Query: 852  PE-TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMD 910
            PE T   P  KILL ED   N  + +   K   H ++   NG  AV   Q  +YDL+LMD
Sbjct: 1098 PESTGDMPGLKILLAEDFVDNRRMMEFYFKSTPHRVETAANGQLAVEMFQRSSYDLVLMD 1157

Query: 911  VCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970
            + MPV+DG  ATR IRS+E                  + G S     +PI+A+TANAL  
Sbjct: 1158 IQMPVLDGYAATRAIRSWEQ-----------------AQGRSP----VPILALTANALQS 1196

Query: 971  SAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
              +     G  + ++KP+   +L E ++ YF
Sbjct: 1197 EVQRSLEAGCTAHLTKPIRKARLLEAMQLYF 1227


>gi|384484982|gb|EIE77162.1| hypothetical protein RO3G_01866 [Rhizopus delemar RA 99-880]
          Length = 455

 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 164/345 (47%), Gaps = 69/345 (20%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTK--LDREQRQLLGVMISSGDLVLQLINDILDLS 429
           + LA MSHEIR+PL  V+++ ++L   +  L+ EQ + L V+ +SG+ +L +INDILD+S
Sbjct: 15  RFLADMSHEIRTPLNAVIALTDLLLQERHLLNDEQAEHLQVIQTSGNHLLTVINDILDIS 74

Query: 430 KVESGV-MKLEAAKFRPREVVKHVLQTA---AASLQ-----KILMLEGDIADDVPI---- 476
           K+      KLE  +F  R+ +K  L  A   AAS Q     +I+    DI+D +PI    
Sbjct: 75  KMNHNPRFKLEYRRFSLRKCIKDALNMARHQAASAQHPKLIQIVECPPDISDTIPIPQLI 134

Query: 477 ---------------------------------EVIGDVLRIRQILTNLISNAIKFTPEG 503
                                             + GD +R+ QIL NL SNA KFT  G
Sbjct: 135 QKLKSIGLLSSPPTFSGYTVLPFIWKIDPEIPDHLTGDTVRLTQILINLCSNATKFTKTG 194

Query: 504 KVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGY 563
            + IK   + +P       K++   Y +  + V ++K   + +T               +
Sbjct: 195 GIQIK---ISKPATDISNFKER---YAAQIERVHQKKIVRRKKT---------------H 233

Query: 564 QDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHA 623
           Q   +  D      +  + D D E  V +   V DTGIG+P + LP LF+ + Q+    A
Sbjct: 234 QSTDNSSDSSDSCYYDETEDPDSEDRVNLEISVTDTGIGMPADRLPRLFKSFSQIDISTA 293

Query: 624 RKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           RKYGGTGLGLAI   LV  MGG L V S+   GS F   LP  ++
Sbjct: 294 RKYGGTGLGLAISSMLVSRMGGELWVESEEGVGSRFALTLPMAIA 338


>gi|27311849|gb|AAO00890.1| histidine kinase-like protein [Arabidopsis thaliana]
 gi|30725488|gb|AAP37766.1| At5g35750 [Arabidopsis thaliana]
          Length = 652

 Score =  145 bits (367), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 162/294 (55%), Gaps = 26/294 (8%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T LD +Q         SG  +  LIN++LD +K+
Sbjct: 66  QFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQAKI 125

Query: 432 ESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           ESG ++LE   F  R ++ +V  L +  A+ +K + L   ++  VP  V+GD  R RQI+
Sbjct: 126 ESGRLELENVPFDMRFILDNVSSLLSGKAN-EKGIELAVYVSSQVPDVVVGDPSRFRQII 184

Query: 490 TNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAV-KEEKHQPKSQT 547
           TNL+ N+IKFT E G + I +++  E    KE L        +  DAV K+      S++
Sbjct: 185 TNLVGNSIKFTQERGHIFISVHLADE---VKEPL--------TIEDAVLKQRLALGCSES 233

Query: 548 ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
               +GF        +++ K      T  S  +   + ++  V     V DTG+GIP +A
Sbjct: 234 GETVSGFPAVNAWGSWKNFK------TCYSTESQNSDQIKLLV----TVEDTGVGIPVDA 283

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
              +F  +MQ  +  +R YGGTG+GL+I K+LVELM G +   S+   GSTF+F
Sbjct: 284 QGRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSF 337



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA+  +K+ G  +  V +G  A+  ++   N+D   MD+ MP MDG 
Sbjct: 512  QILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGF 571

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR +R  E   N    A   +   M    SS H   +PI+AMTA+ +  + EEC   G
Sbjct: 572  EATRRVRELEREIN-KKIASGEVSAEMFCKFSSWH---VPILAMTADVIQATHEECMKCG 627

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L   + ++F
Sbjct: 628  MDGYVSKPFEEEVLYTAVARFF 649


>gi|260778745|ref|ZP_05887637.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604909|gb|EEX31204.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 749

 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/298 (33%), Positives = 144/298 (48%), Gaps = 72/298 (24%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA+MSHEIR+P+ GV+ +  IL  +KL REQ++L+     SG  +L +INDILD +++
Sbjct: 226 RFLASMSHEIRTPMNGVLGILNILEESKLSREQKKLVNTATESGQFLLSIINDILDFTRM 285

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ES  ++LE   F  R+ V++V++T   S + + L L   +   VP  V GD  R++QIL 
Sbjct: 286 ESNTLRLEHKPFNFRQCVENVVETFQPSAKVRSLDLNCILDGSVPANVQGDENRVKQILH 345

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NLI NA+K                  F KEG         S T  V  + H         
Sbjct: 346 NLIGNAMK------------------FTKEG---------SVTIQVHADTH--------- 369

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                     EG Q                         V I C V DTG+GI  +A+  
Sbjct: 370 ----------EGNQ-------------------------VKIVCKVIDTGVGINRSAMDY 394

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           LF ++  V   ++R   G+GLGLAICK+L ELM G +   S    GSTF+F +  +++
Sbjct: 395 LFDEFTMVDQTYSRSQEGSGLGLAICKRLCELMDGYIEAESTPSIGSTFSFSIKLELA 452



 Score = 93.2 bits (230), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 22/143 (15%)

Query: 860  PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
              IL+ EDNK N +V + M K++G S+D+  NG  A+  V+  +YDLI MD+ MP MDG+
Sbjct: 473  ASILVAEDNKANQLVIREMFKRMGLSMDIAENGRRAIEMVEQYHYDLIFMDISMPEMDGM 532

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +  R IRS  D                          +IPIIA+TA++LS   E+    G
Sbjct: 533  ETCRAIRSMTDEKTC----------------------QIPIIALTAHSLSGDKEQFLDAG 570

Query: 980  MDSFVSKPVTFQKLKECLEQYFP 1002
            M+ ++SKP+   +L E +  +  
Sbjct: 571  MNDYLSKPIRLSQLIEKINLFLS 593


>gi|430748143|ref|YP_007207272.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
 gi|430019863|gb|AGA31577.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
          Length = 1519

 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/438 (28%), Positives = 182/438 (41%), Gaps = 106/438 (24%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIP      LF+ + Q      RKYGGTGLGLAI  +LV+LMGG + + S+   
Sbjct: 1029 VSDTGIGIPPEQQQKLFKAFSQADTSTTRKYGGTGLGLAISARLVQLMGGEIWLESQAGQ 1088

Query: 656  GSTFTFILPY--------QVSPIE-------------ENSDDPDDLSDMADQDSVTDDVT 694
            GS F F LP+        +  P+E             +N+ +   L +M     +     
Sbjct: 1089 GSIFHFTLPFGLVCGPVARARPVEPEQVHGLPVLIVDDNATNRRILEEMLTNWGMKPTTV 1148

Query: 695  AGFFQFQPRTLGSLFSSNGTSRSKKL------LPNSIGFASAHKVNGFSETSYS----FP 744
            AG  +     + +L  + G  R   L      +P   GF  A ++   S  + S      
Sbjct: 1149 AGGRE----AIATLAEARGAGRPFALVLLDAMMPGMDGFTLAEQIKQDSALTGSTLMMLS 1204

Query: 745  SNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNP 804
            S NR+      EDA    E+                                  ++   P
Sbjct: 1205 SANRR------EDAARCQELG-------------------------------VATYLMKP 1227

Query: 805  ATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILL 864
              ES S  +A    +  S ++EP             +Q  + +         K   ++LL
Sbjct: 1228 IRES-SLLDAIMTTLGASMSDEPYG-----------AQPAAPAMPNGSRRTWKRMLRLLL 1275

Query: 865  VEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRL 924
             EDN IN  +A +++K+ GH + VVNNG EA+ A+    +D +LMDV MP MDG +AT  
Sbjct: 1276 AEDNAINQRLAMALLKKQGHQVVVVNNGREALAAMNGSRFDAVLMDVQMPEMDGFEATAA 1335

Query: 925  IRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984
            IRS E                   +G+  H     IIAMTA+AL    + C   GMD++V
Sbjct: 1336 IRSRE-------------------AGTGVH---TTIIAMTAHALKGDRDRCLDAGMDAYV 1373

Query: 985  SKPVTFQKLKECLEQYFP 1002
            SKP+  + L   LE   P
Sbjct: 1374 SKPLRLEDLLGVLEGLTP 1391



 Score =  106 bits (264), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 91/141 (64%), Gaps = 1/141 (0%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            + LA MSHEIR+PL G++ M E+  +T+L  +Q++ LG++  S D +L +INDILD SK+
Sbjct: 875  EFLANMSHEIRTPLNGIIGMTELALDTELTPDQQEYLGMVKLSADHLLTVINDILDFSKI 934

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
            E+G + L+   F  R+ +   + T A  + +K L L   +A DVP  ++GD  R+ Q++ 
Sbjct: 935  EAGKLDLDIIDFHLRDALDDTMATLAMRAHKKGLELADHVAADVPDVLVGDPHRLCQVVV 994

Query: 491  NLISNAIKFTPEGKVGIKLYV 511
            NLI NAIKFT  G+  +++ V
Sbjct: 995  NLIGNAIKFTERGEAVLRVEV 1015


>gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum]
          Length = 2062

 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 183/418 (43%), Gaps = 73/418 (17%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            V ++  V DTGIGIP++ L  +F  + Q      R+YGGTGLGL I  +LVELM G+L+V
Sbjct: 1498 VVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSV 1557

Query: 650  TSKVHCGSTFTFILPYQVS----PIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTL 705
             SK   GSTF F   +  S    P+ E  +D   L        + DD           TL
Sbjct: 1558 VSKSGKGSTFEFTAQFPTSPNQLPLTEKLNDVHTL--------IVDD--------NKSTL 1601

Query: 706  GSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVA 765
              L         K++L     F    +V+  ++ +++       K T P E     A++ 
Sbjct: 1602 KVL---------KQILSE---FGITSEVSNNTQDAFNMIVK-ATKTTKPFEFIFVDAQLG 1648

Query: 766  ETLSE--PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSK 823
             +L +   E + +H               C  +               S +N      SK
Sbjct: 1649 TSLIDMMVEKNMNH---------------CKTKIIMLISGGGQRGYPDSSSNFITGYLSK 1693

Query: 824  TNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLG 883
               P +I ++  +     Q P     ++  T  +    ILL EDN +N  +A  ++++ G
Sbjct: 1694 PVSPSEIFDILTRQGITRQIPKQLCKKIQLT-SEIFGDILLAEDNAVNQRLAIRLLEKFG 1752

Query: 884  HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIE 943
            H + +  NG++AV + Q + +DLILMDV MP   G +AT  IR  E         E GI 
Sbjct: 1753 HRVQLAENGLQAVASSQLRKFDLILMDVQMPHCGGFEATAQIRKREH--------EQGIH 1804

Query: 944  QAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                           PIIAMTA+AL+    +C   GMD ++SKP+   +LK  +E+Y 
Sbjct: 1805 T--------------PIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKYL 1848



 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 123/216 (56%), Gaps = 27/216 (12%)

Query: 323  VNYMGMDVTDQVRKREKMAK------LREEIAVQKAKETEL-----NKTIHITEET---- 367
            VN M  ++T QVR   ++AK          I+V    E  L     N+ IH  +ET    
Sbjct: 1274 VNTMAANLTTQVRSIAEIAKAVTKGDFTRVISVDAKGEVNLLKLIINEMIHNLKETPLKN 1333

Query: 368  ----------MRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGD 416
                       RAK   +A MSHEIR+P+ G++ M ++  +T+L  EQR+ L ++ SS  
Sbjct: 1334 TLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAG 1393

Query: 417  LVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVP 475
             +L +INDILD SK+E+G ++L+ A+F  R  +   L+T +  + QK + L  DIA DVP
Sbjct: 1394 SLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVP 1453

Query: 476  IEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
              +IGD  R+RQI+ NL+ NAIKFT +G+V + + V
Sbjct: 1454 DSLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKV 1489


>gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4]
 gi|122126078|sp|Q54YZ9.2|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J
 gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4]
          Length = 2062

 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 183/418 (43%), Gaps = 73/418 (17%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            V ++  V DTGIGIP++ L  +F  + Q      R+YGGTGLGL I  +LVELM G+L+V
Sbjct: 1498 VVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSV 1557

Query: 650  TSKVHCGSTFTFILPYQVS----PIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTL 705
             SK   GSTF F   +  S    P+ E  +D   L        + DD           TL
Sbjct: 1558 VSKSGKGSTFEFTAQFPTSPNQLPLTEKLNDVHTL--------IVDD--------NKSTL 1601

Query: 706  GSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVA 765
              L         K++L     F    +V+  ++ +++       K T P E     A++ 
Sbjct: 1602 KVL---------KQILSE---FGITSEVSNNTQDAFNMIVK-ATKTTKPFEFIFVDAQLG 1648

Query: 766  ETLSE--PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSK 823
             +L +   E + +H               C  +               S +N      SK
Sbjct: 1649 TSLIDMMVEKNMNH---------------CKTKIIMLISGGGQRGYPDSSSNFITGYLSK 1693

Query: 824  TNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLG 883
               P +I ++  +     Q P     ++  T  +    ILL EDN +N  +A  ++++ G
Sbjct: 1694 PVSPSEIFDILTRQGITRQIPKQLCKKIQLT-SEIFGDILLAEDNAVNQRLAIRLLEKFG 1752

Query: 884  HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIE 943
            H + +  NG++AV + Q + +DLILMDV MP   G +AT  IR  E         E GI 
Sbjct: 1753 HRVQLAENGLQAVASSQLRKFDLILMDVQMPHCGGFEATAQIRKREH--------EQGIH 1804

Query: 944  QAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                           PIIAMTA+AL+    +C   GMD ++SKP+   +LK  +E+Y 
Sbjct: 1805 T--------------PIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLKAMIEKYL 1848



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 123/216 (56%), Gaps = 27/216 (12%)

Query: 323  VNYMGMDVTDQVRKREKMAK------LREEIAVQKAKETEL-----NKTIHITEETM--- 368
            VN M  ++T QVR   ++AK          I+V    E  L     N+ IH  +ET    
Sbjct: 1274 VNTMAANLTTQVRSIAEIAKAVTKGDFTRVISVDAKGEVNLLKLIINEMIHNLKETTLKN 1333

Query: 369  -----------RAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGD 416
                       RAK   +A MSHEIR+P+ G++ M ++  +T+L  EQR+ L ++ SS  
Sbjct: 1334 TLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLSMVQSSAG 1393

Query: 417  LVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVP 475
             +L +INDILD SK+E+G ++L+ A+F  R  +   L+T +  + QK + L  DIA DVP
Sbjct: 1394 SLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKTLSWRAHQKCIELVCDIASDVP 1453

Query: 476  IEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
              +IGD  R+RQI+ NL+ NAIKFT +G+V + + V
Sbjct: 1454 DSLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKV 1489


>gi|88714405|gb|ABD49494.1| cytokinin receptor 1 [Physcomitrella patens]
          Length = 1075

 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 17/306 (5%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T L+  Q       ++SG  ++ LIN++LD +K+
Sbjct: 423 QFLATVSHEIRTPMNGVLGMLQMLIDTPLNPAQLDYAQTALASGKALINLINEVLDQAKI 482

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++ E   F  R ++  VL      S    + L   ++  VP  ++GD  R RQI+T
Sbjct: 483 ESGRLEFEHVPFDLRAILDDVLSLFHGKSRASGIELAVYVSARVPKILVGDPGRFRQIIT 542

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQT-AS 549
           NL+ N+IKFT  G + + +++  +     +G         S  DA      + +S    +
Sbjct: 543 NLVGNSIKFTEAGHIFVCVHLNEDVNMVMDG---------SGGDADDTMDGEVESAGPLN 593

Query: 550 DQNGFHDKKHGEGYQDHKHDDDPGTPV-----SHGNSMD-EDLEATVWIRCDVYDTGIGI 603
           D N   +   G    D+++  +    +     SH ++    D    V +   V DTG+GI
Sbjct: 594 DMNYRFNTLSGRETADYRNSWEMFERLLAQEQSHNDTWSYSDSSDVVNLVVSVEDTGVGI 653

Query: 604 PENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
           P +    +F  +MQ  +  +R YGGTG+GL+I + LVELM G +   S+   GSTFTF +
Sbjct: 654 PLHVQDRVFTPFMQADSSTSRNYGGTGIGLSISRCLVELMSGEMGFVSRPKVGSTFTFTV 713

Query: 664 PYQVSP 669
             Q  P
Sbjct: 714 ELQRVP 719



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 15/145 (10%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA   + + G  ++ V +G  A+  ++   N+D   MDV MP MDG 
Sbjct: 938  RILVVDDNPVNRKVAAGALHKYGAQVECVYSGRAAIQKLKPPHNFDACFMDVQMPEMDGF 997

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR---IPIIAMTANALSESAEECF 976
            +AT LIR  E       AAE G    +P+      FKR   +PI+AMTA+ +  ++EEC 
Sbjct: 998  EATGLIRKAEAA-----AAERGQAAGLPT------FKRRLHVPILAMTADVIQATSEECM 1046

Query: 977  ANGMDSFVSKPVTFQKLKECLEQYF 1001
              GMD +V+KP    +L + + ++F
Sbjct: 1047 RCGMDGYVAKPFDEHQLYQAVAKHF 1071


>gi|22353121|gb|AAM14700.1| cytokinin receptor [Catharanthus roseus]
          Length = 1041

 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/296 (33%), Positives = 163/296 (55%), Gaps = 20/296 (6%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L  T LD +Q        +SG  ++ LIN++LD +K+
Sbjct: 442 QFLATVSHEIRTPMVGVLGMLQMLMGTNLDVKQLDYAETAHASGKDLISLINEVLDQAKI 501

Query: 432 ESGVMKLEAAKFRPR-EVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R ++ K V   +  S +K + L   ++D VP  VIGD  R RQI+T
Sbjct: 502 ESGRLELEAVPFDLRADLDKVVSLLSGKSHEKDIELAVYVSDQVPEVVIGDPGRFRQIIT 561

Query: 491 NLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTAS 549
           NL+ N+IKFT + G + + +++  E    K  L  K +  + +   +++      + + +
Sbjct: 562 NLVGNSIKFTKDKGHIFVSVHLADE---VKSPLDIKDEVLKQSLTLIQDR----STASFN 614

Query: 550 DQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALP 609
             +GF        ++  K          + + M E+    + +   V DTG GI  +A  
Sbjct: 615 TLSGFPVVDRWRSWEKFK----------NLSGMPEE-SKKIKLLVTVEDTGDGIVYDAQD 663

Query: 610 TLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
            +F  ++Q  +  +RKYGGTG+GL+I K+LV+L+GG +   S+   GSTF+F   +
Sbjct: 664 RIFTPFVQADSSTSRKYGGTGIGLSISKRLVDLVGGEIGFVSEPGTGSTFSFTAAF 719



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 79/143 (55%), Gaps = 7/143 (4%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            ++L+V+DN +N  VA+  +++ G  +    +G  A+  ++   ++D   MD+ MP MDG 
Sbjct: 901  RMLVVDDNPVNRKVAELALRKYGAVVTCEASGEAALQRLKPPHDFDACFMDLQMPEMDGF 960

Query: 920  KATRLIRSFEDTGNWDA-AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            +AT+ IR  E   N +  + E G +++     +   +   PI+AMTA+ +  + E+C   
Sbjct: 961  EATQKIRHLEREYNENVKSGEIGTDKS-----TDEAYWHTPILAMTADLIQATNEKCRKC 1015

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GMD +VSKP   ++L   +  +F
Sbjct: 1016 GMDGYVSKPFDDEQLYSAVAPFF 1038


>gi|347756505|ref|YP_004864068.1| Signal transduction histidine kinase [Candidatus
           Chloracidobacterium thermophilum B]
 gi|347589022|gb|AEP13551.1| Signal transduction histidine kinase [Candidatus
           Chloracidobacterium thermophilum B]
          Length = 780

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 146/302 (48%), Gaps = 66/302 (21%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+P+ GV+ M+ +L++T L  EQR+ L  + SS + +L ++NDILD SK+E
Sbjct: 240 FLANMSHEIRTPMNGVIGMSNLLASTPLSGEQREYLETIRSSAESLLVILNDILDFSKIE 299

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G + +E   F  RE ++  L   A  + +K L +   I D+VP  ++ D  R RQ+L N
Sbjct: 300 AGALHIEQTPFDLRECIESTLDVIAEPASRKRLDVAYLIEDNVPTTIVSDPTRFRQVLLN 359

Query: 492 LISNAIKFTPEGKVGIKLYVVP----EPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQT 547
           L+SNAIKFT +G+V + +   P    EP   K     + + Y+   D V++         
Sbjct: 360 LLSNAIKFTEQGEVVVTVSAEPLDDDEPSLTKLTANDRPRRYELRVD-VRDTG------- 411

Query: 548 ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
                G   + HG  ++D                                          
Sbjct: 412 ----IGIPPEAHGRVFRD------------------------------------------ 425

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
                  + Q +    R YGGTGLGLAI K+LVE++GG +   S+V  G+TF F LP + 
Sbjct: 426 -------FEQATETTYRVYGGTGLGLAISKRLVEMLGGNIWFESEVGRGTTFHFTLPCES 478

Query: 668 SP 669
           +P
Sbjct: 479 AP 480



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 28/147 (19%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH----AVQCQN-YDLILMDVCMPV 915
            ++L+VEDN +N  +A  M+++LG+  D  ++G+E V     AV C+  YDL+ MDV MP 
Sbjct: 642  RVLVVEDNVVNRKLAVRMLEKLGYQPDTASDGIEGVEAILGAVACEKPYDLVFMDVQMPG 701

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
             DGL+A R +R                     ++ + +   R   IA+TA  L E     
Sbjct: 702  KDGLEAVREVR---------------------AALAPDMCPR--FIALTAAVLEEERRAA 738

Query: 976  FANGMDSFVSKPVTFQKLKECLEQYFP 1002
            FA G+D ++ KP T   L   L+   P
Sbjct: 739  FAAGVDDYLGKPFTIHDLVAALQATSP 765


>gi|302808503|ref|XP_002985946.1| hypothetical protein SELMODRAFT_123147 [Selaginella moellendorffii]
 gi|300146453|gb|EFJ13123.1| hypothetical protein SELMODRAFT_123147 [Selaginella moellendorffii]
          Length = 176

 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/198 (41%), Positives = 114/198 (57%), Gaps = 37/198 (18%)

Query: 809  TSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKP----KPKPKILL 864
            T HSE  +  + T        +C+  ++      SP  ++  V    P    + +PKILL
Sbjct: 6    TVHSEVGKGSVFTFSV-----LCKSHDR----DCSPEPTAKPVDNRPPCNHRRKEPKILL 56

Query: 865  VEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRL 924
             EDNK+NVMVA SM+K+LG +  VV NGVEA+ A++   YDL+L+D+CMP+MDGL+    
Sbjct: 57   AEDNKVNVMVAISMLKRLGFTAQVVANGVEALEAMRKDKYDLVLLDICMPLMDGLQVAYA 116

Query: 925  IRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984
            IR                     ++G+S    RIPIIA+TANAL    E CFA+GMD+F+
Sbjct: 117  IR---------------------NTGTS---PRIPIIAVTANALRSDIERCFAHGMDAFI 152

Query: 985  SKPVTFQKLKECLEQYFP 1002
             KPV FQKL+E L +Y P
Sbjct: 153  PKPVMFQKLREILSKYLP 170


>gi|254412177|ref|ZP_05025952.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196181143|gb|EDX76132.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1263

 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 176/347 (50%), Gaps = 45/347 (12%)

Query: 322  GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
            GV    +D+T++ +  E + + +E +AV++AK +E+           RAK + L  MSHE
Sbjct: 715  GVVVAYLDITERKQAEEALQQAKE-VAVREAKRSEIAN---------RAKSEFLTNMSHE 764

Query: 381  IRSPLTGVVSMAEIL-SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
            +R+PL G++  A++L  +T L   Q   L ++   G+ +L LINDILDL+K+E+  M+L 
Sbjct: 765  LRTPLNGILGYAQLLKQDTTLTNPQHHNLNIIHQCGEHLLTLINDILDLAKIEAQKMELY 824

Query: 440  AAKFRPREVVKHVLQTAA-----ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLIS 494
              +F     + + L + A      + QK ++    +   +P  VI D  R+RQ+L NL+S
Sbjct: 825  PTEFH----LPNFLHSLADLFQLRAQQKDIIFTYQVLSPLPNGVIADNKRLRQVLCNLLS 880

Query: 495  NAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGF 554
            NAIKFT  G+V   + VV                  + TD VK        ++   Q+GF
Sbjct: 881  NAIKFTDRGEVTFTVSVV------------------NRTD-VKSACRNSAVESKLSQSGF 921

Query: 555  HDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRK 614
                     Q+      P  PV    + D+  +    IR  + DTG+GI  + L  +F  
Sbjct: 922  CTNLTSNS-QNQVPKPTPTNPVYSRLAKDQHCKT---IRFQIKDTGVGIDLSQLTKIFLP 977

Query: 615  YMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
            + QVS DH+    GTGLGLAI ++L++LMG  + V S    GSTF F
Sbjct: 978  FHQVS-DHSHATEGTGLGLAISQKLIQLMGSEIKVKSIPGKGSTFWF 1023



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 22/139 (15%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            K K+++V+DN++N  + ++M+K LG  I    +G++ +  V     DLIL+D+ MP MDG
Sbjct: 1051 KRKLMIVDDNRVNRTLLRAMLKPLGFEIIEAVDGLDCLQKVVESYPDLILIDLVMPEMDG 1110

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            L+ TR + +     + D  A                      IA++A+   +  +E  A 
Sbjct: 1111 LETTRRMLALPQLQDKDIVA----------------------IALSASVYPQIQQESLAA 1148

Query: 979  GMDSFVSKPVTFQKLKECL 997
            G   F++KPV  Q+L + +
Sbjct: 1149 GCRGFLAKPVESQQLLDAI 1167


>gi|171913995|ref|ZP_02929465.1| Signal transduction histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 702

 Score =  144 bits (362), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 168/354 (47%), Gaps = 85/354 (24%)

Query: 317 SGETIGVNYMGMDVTDQVRKREKMAKLREE----IAVQKAKETELNKTIHITEETMRAKQ 372
           S    GV  +G      +  RE + +LR E     A  +A+++E  K+I           
Sbjct: 167 SATASGVVALGAGALALMLFRESLKQLRREERLAAAKVRAEQSEKEKSI----------- 215

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LATMSHEIR+P+  ++  +E+L+N     ++++    ++ SG  +LQ+INDILDLSK+E
Sbjct: 216 FLATMSHEIRTPMNAILGFSELLANEAQSEQEKRHAETILVSGRALLQIINDILDLSKIE 275

Query: 433 SGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G++++ +     R+VV+ V Q  A  ++++ L L  +I+  VP  ++ D +R+RQIL N
Sbjct: 276 AGMLQISSDPCDVRDVVRFVQQMFARQAIERGLELHAEISPSVPNSLLIDSIRLRQILVN 335

Query: 492 LISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQ 551
           ++ N++KFT  G                                                
Sbjct: 336 VVGNSLKFTERG------------------------------------------------ 347

Query: 552 NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTL 611
            G   + HGE   +H+                    + + +  +V DTGIGIP      +
Sbjct: 348 -GVTVRLHGERGTEHR--------------------SRMLLTVEVEDTGIGIPREMQAEV 386

Query: 612 FRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
           FR ++QV+     +  GTGLGLAI K+L +LMGGR+ + S+   G+ F F  P+
Sbjct: 387 FRPFVQVNGGTKSQTRGTGLGLAIVKRLSDLMGGRILLDSQPGRGTLFRFEFPH 440



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 35/165 (21%)

Query: 848  SAEVPETKPKP---------KP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
            SA +PE++ K          +P KIL V+DN  N  +   +     H I +  +G EAV 
Sbjct: 444  SARLPESQTKEHLSIDFNKLRPSKILAVDDNPTNRSLVADIFASTHHKILLAASGAEAVK 503

Query: 898  AVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR 957
                +  D++LMD+ MP MDG +A RLIR   D                         + 
Sbjct: 504  TAAAERPDVVLMDIRMPEMDGREAMRLIRQQPD------------------------LEL 539

Query: 958  IPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            +P++A+TA++LS+  E+      D ++ KP +  +L   L Q+ P
Sbjct: 540  LPLVAVTASSLSQE-EQALRRSFDGYIRKPFSHAELYRELAQFIP 583


>gi|302121695|gb|ADK92861.1| histidine kinase 1 [Hypericum perforatum]
          Length = 1199

 Score =  144 bits (362), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 170/330 (51%), Gaps = 26/330 (7%)

Query: 341 AKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKL 400
           A ++  + V+      L  T+      +   + LAT+SHEIR+P+ GV+ M ++L +T+L
Sbjct: 576 AAIKRIVEVEAECHEMLKLTVRAEAADVAKSKFLATVSHEIRTPMNGVLGMLQMLMDTEL 635

Query: 401 DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL-----QT 455
           D  Q        +SG  ++ LI D+LD +K+ESG ++LEA  F    V+  VL     ++
Sbjct: 636 DTSQEDYAKTAHASGRELISLIGDVLDQAKIESGRLELEAVPFDLHSVLDSVLSMFSGRS 695

Query: 456 AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE--GKVGIKLYVVP 513
           +   ++K+ +   +   ++   VIGD  R RQI+ NL+ N+IKFT +  G + + +++V 
Sbjct: 696 SEKGIEKLAVYASNCVSEI---VIGDPERFRQIIQNLVGNSIKFTRDNGGHIFVTVHLVE 752

Query: 514 EPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPG 573
           E       L  K     + +  V  +   P +      +G+      + +++ K ++   
Sbjct: 753 E---VTGQLDTKDAVLVNGSVPVDRD---PSNSVCETLSGYPVVNRWKSWENFKKNNI-- 804

Query: 574 TPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGL 633
                 NSM E     V +   V DTG+GI  +A   +F  ++Q  +  +R YGGTG+GL
Sbjct: 805 ------NSMKES--DVVRVLVTVEDTGVGISPDAQSRIFTPFVQGDSSTSRTYGGTGIGL 856

Query: 634 AICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
           +I K LVELM G +   S+ + GSTF+F +
Sbjct: 857 SISKCLVELMDGEIGFVSEANIGSTFSFTV 886



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 5/142 (3%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA+  +K+ G  +   NNG EAV  ++    +D   MD  MP MDGL
Sbjct: 1059 QILVVDDNMVNRRVAEGALKKYGAIVTCANNGSEAVKMLEPPHRFDACFMDRHMPEMDGL 1118

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +AT+ IRS E+  N   A+    E  M   G+  ++   PI+AMTA+ +  + EEC   G
Sbjct: 1119 EATQRIRSMEELVNGRIASG---EVPMVMFGNVAYW-HTPILAMTADVIQGANEECLRCG 1174

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD FVSKP    +L   L ++F
Sbjct: 1175 MDDFVSKPFEEAQLYNALARFF 1196


>gi|440799953|gb|ELR20996.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain containing protein
            [Acanthamoeba castellanii str. Neff]
          Length = 2378

 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 186/382 (48%), Gaps = 45/382 (11%)

Query: 333  QVRKREKMAKLREEIAVQKAKET--ELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVV 389
            Q+   + M  +   + V++ K+T  EL    +  +E  R K   LA  SHE+R+PL G++
Sbjct: 1564 QILTSQFMISIENSMLVERLKKTNKELKLKNNQLKEVDRLKDSFLAVASHELRTPLNGII 1623

Query: 390  SMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449
             M  +L +T +  EQ++ +  + +S + +L+L+ND+LDLSK+++  +KLE  +F   E +
Sbjct: 1624 GMTSLLEDTSMTAEQKEYVDNIKASSETLLELVNDVLDLSKLKAMKVKLEEKRFSLAECL 1683

Query: 450  KHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            +  L+     +  K L L   +   +P  V+GD +R+RQIL NL++N++KFT  G++ I 
Sbjct: 1684 ETSLKLVEFKAATKGLNLAYIVDPALPQYVVGDDMRLRQILLNLLNNSVKFTDSGEIVIV 1743

Query: 509  L--YVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDH 566
            +  +V   P  +       S +  S++ +        ++Q+   +     K HG G    
Sbjct: 1744 VSPFVNASPSSSSSSSSSSSSSSSSSSSSSSAVYPASRAQSGGLEGPIRGKDHGSGGSSE 1803

Query: 567  KHD-----DDPGTPVSHGNSMDEDLEAT-------------------------------- 589
             H+      D  +  + G+S++ED  +T                                
Sbjct: 1804 DHERSSSDMDDSSTFTGGSSLEEDGSSTQEEGAGKRSRGKKGKGKESASGDGSDGLIESE 1863

Query: 590  --VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
              + +  +V DTGIGI       LF+ + QV    +RKYGGTGLGL+ICK+L ++  G++
Sbjct: 1864 DHLLLHFEVRDTGIGIKAEDFHVLFKPFSQVDTSLSRKYGGTGLGLSICKRLCKMFHGKI 1923

Query: 648  TVTSKVHCGSTFTFILPYQVSP 669
               S+   GS F F     V P
Sbjct: 1924 WAESRPQRGSIFHFTARVGVPP 1945



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 31/150 (20%)

Query: 860  PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
            P +L+VEDN +N  +   ++ + G+      NG  A+ A+    +D ILMD+ MPV+DGL
Sbjct: 2246 PLVLVVEDNAMNRKLLSQILYKAGYQYQTAENGEFALQAILKHRFDAILMDLQMPVLDGL 2305

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA---------MTANALSE 970
            + TR IR+ E                   +G+++   R PIIA         +TA+   +
Sbjct: 2306 ETTRRIRTME-------------------AGTTS---RTPIIAAVWWERNAGITASVSEQ 2343

Query: 971  SAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                C   GMDSF+SKP+  + L   L ++
Sbjct: 2344 DRAVCLGVGMDSFLSKPIKREHLLRILREW 2373


>gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
            266]
 gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
            266]
          Length = 1398

 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 167/375 (44%), Gaps = 92/375 (24%)

Query: 307  LIYVEPVFSKSGETIGVNYMGMDVTDQVRKR--------EKMAKLREEIAVQKAKETELN 358
            LIY E  F          ++G D   +V+K           +A+L     ++   ET L 
Sbjct: 805  LIYHEHCF---------GFVGFDAVREVKKWGDDEISLLRVLAELFTNAELRFRHETALV 855

Query: 359  KTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDL 417
               +  E   RAK + LA MSHEIR+P+ GV+ MA +L +T L  EQR    ++++SG+ 
Sbjct: 856  DARYAAESANRAKSEFLANMSHEIRTPMNGVIGMANLLLDTDLSDEQRDFADMLLASGES 915

Query: 418  VLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIE 477
            +L +INDILD SK+E+G ++LE   F  R++                           +E
Sbjct: 916  LLTVINDILDFSKIEAGKLELEHIVFDLRKL---------------------------LE 948

Query: 478  VIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQS--ATDA 535
              G V+ ++ +  NL  N +             V PE P   +G   + +   +  A +A
Sbjct: 949  SFGAVMGLKAVEKNLEFNCV-------------VSPEVPVFFKGDPGRIRQILNNLAGNA 995

Query: 536  VKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCD 595
            +K             QNG                      V+   SM  +      +R  
Sbjct: 996  IK-----------FTQNG---------------------NVTVAVSMQSENNGDAVLRFS 1023

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIPE  L  LF+ + QV A   RKYGGTGLGLAI +QLVELMGG++ V S    
Sbjct: 1024 VKDTGIGIPEAKLDRLFKSFTQVDASTTRKYGGTGLGLAISRQLVELMGGKIGVISHEGN 1083

Query: 656  GSTFTFILPYQVSPI 670
            GS F F +  +  P 
Sbjct: 1084 GSEFWFTIFLKKQPF 1098



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 92/169 (54%), Gaps = 28/169 (16%)

Query: 841  SQSPSSSSAEVPETKPKPKP-------KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV 893
            S++PS S     E +P   P       +ILL ED+++N MV   ++ + G+ +DVV+NG 
Sbjct: 1244 SRNPSISYPVTEEGEPPMVPVGKLEHYRILLAEDSRVNQMVVIGVLTKFGYGVDVVSNGQ 1303

Query: 894  EAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
            E V  +Q + YDL+LMDV MPVMDGL AT +IR                    P+S   +
Sbjct: 1304 ECVDVLQKRTYDLVLMDVQMPVMDGLNATGIIRD-------------------PASKVLD 1344

Query: 954  HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            H   IP+IA+TA+A+    E C   GM+ ++SKP+    L E + ++ P
Sbjct: 1345 H--NIPVIALTAHAMQGDRESCLYAGMNDYISKPIDASVLTETISKWLP 1391


>gi|443476320|ref|ZP_21066232.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
 gi|443018713|gb|ELS32917.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
          Length = 1179

 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/361 (31%), Positives = 172/361 (47%), Gaps = 78/361 (21%)

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
           + R+RE++ K          +  EL +   I E   R+K + LATMSHEIR+P+  V+ M
Sbjct: 585 ETRQREQLIK----------QNAELEEARIIAEAANRSKSEFLATMSHEIRTPMNAVIGM 634

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
             +L +T L REQR+ + +  ++G  +L +INDILD SK+ESG ++LE   F  R  ++ 
Sbjct: 635 TGVLLDTNLTREQREFVEIARNAGSTLLTIINDILDFSKIESGHLELEEQTFDLRTCLED 694

Query: 452 VLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
            ++   A +++K + L   I  DV + V+GD+ R    L  +++N I             
Sbjct: 695 TIELLWAKAVEKGIDLGYFIHPDVDLIVVGDMTR----LRQVLANLIG------------ 738

Query: 511 VVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDD 570
                      +K  S+   + + +  E  H  +     D +  +  +H           
Sbjct: 739 ---------NAIKFTSRGSVNISISQMEISHYLRC----DLSDLYSDRH----------- 774

Query: 571 DPGTPVSHGNSMDEDLEATVWIRC---DVYDTGIGIPENALPTLFRKYMQVSADHARKYG 627
                           EAT  +R     V DTGIGIP + L  LF+ + QV A   R+YG
Sbjct: 775 ----------------EATQLLRTLQFAVKDTGIGIPSDRLYRLFQPFSQVDASTTRQYG 818

Query: 628 GTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQD 687
           GTGLGLAI K L ELMGG + V S V  GSTF F +   V       ++ D LS ++  D
Sbjct: 819 GTGLGLAISKHLCELMGGTMWVESDVQQGSTFYFTITVPV-------NNCDRLSSISIAD 871

Query: 688 S 688
           S
Sbjct: 872 S 872



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 76/139 (54%), Gaps = 20/139 (14%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL EDN IN  VA  +++++G+  DV  NG+E + A+  Q YDLI MD+ MPVMDG+ 
Sbjct: 934  RILLAEDNVINQKVAIHILQRMGYRADVAANGLEVIDALLQQPYDLIFMDMQMPVMDGID 993

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ I       NW     A                R  I+AMTANA+    E C A GM
Sbjct: 994  ATQKIYQ-----NWQDGKFA---------------TRPRIVAMTANAMQGDREICLAAGM 1033

Query: 981  DSFVSKPVTFQKLKECLEQ 999
            D ++SKP+   +L   L++
Sbjct: 1034 DDYLSKPIRNSELVRVLQE 1052


>gi|302806276|ref|XP_002984888.1| pseudo response regulator [Selaginella moellendorffii]
 gi|300147474|gb|EFJ14138.1| pseudo response regulator [Selaginella moellendorffii]
          Length = 176

 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/198 (41%), Positives = 114/198 (57%), Gaps = 37/198 (18%)

Query: 809  TSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKP----KPKPKILL 864
            T HSE  +  + T        +C+  ++      SP  ++  V    P    + +P+ILL
Sbjct: 6    TVHSEVGKGSVFTFSV-----LCKSHDR----DCSPEPTAKPVDNRPPCNHRRKEPRILL 56

Query: 865  VEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRL 924
             EDNK+NVMVA SM+K+LG +  VV NGVEA+ A++   YDL+L+D+CMP+MDGL+    
Sbjct: 57   AEDNKVNVMVAISMLKRLGFTAQVVANGVEALEAMRKDKYDLVLLDICMPLMDGLQVAYA 116

Query: 925  IRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984
            IR                     ++G+S    RIPIIA+TANAL    E CFA+GMD+F+
Sbjct: 117  IR---------------------NTGTS---PRIPIIAVTANALRSDIERCFAHGMDAFI 152

Query: 985  SKPVTFQKLKECLEQYFP 1002
             KPV FQKL+E L +Y P
Sbjct: 153  PKPVMFQKLREILSKYLP 170


>gi|220907616|ref|YP_002482927.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864227|gb|ACL44566.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 887

 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 116/373 (31%), Positives = 180/373 (48%), Gaps = 63/373 (16%)

Query: 295 TFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKE 354
           +++ +  G+   L Y +P   +SGE        +DV + V  +  +A  +  +  Q+ ++
Sbjct: 255 SYQGQTNGAIALLQYTQPRSWRSGE--------VDVLEAVAAQVGIALAQAHLLEQETRQ 306

Query: 355 TE---------LNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQR 405
            E         +              + LA MSHEIR+P+  V+ M  +L +T L  +QR
Sbjct: 307 REQLWQQNLALVAAKQAAEAANQAKGRFLAVMSHEIRTPMNAVIGMTTLLLDTSLTPQQR 366

Query: 406 QLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKIL 464
             +  +  SG+ +L LINDILD SK+ESG ++LE   F  R  ++  +   A  + +K +
Sbjct: 367 DYVETIHGSGEALLCLINDILDFSKIESGKLELETRPFNLRTCLEEAIDLLATRATEKGI 426

Query: 465 MLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQ 524
            L   I+   P ++ GDV+R+RQIL NLI+NAIKFT  G+V I +        A+E    
Sbjct: 427 ELAYLISPPTPEQIQGDVIRLRQILVNLINNAIKFTEAGEVVISVT-------AREVFPL 479

Query: 525 KSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDE 584
           +S+        +   +  P S +A+ +   ++    E                       
Sbjct: 480 RSQ--------LSGGEEPPFSVSAAYETLPYEMPQYE----------------------- 508

Query: 585 DLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMG 644
                  I+  V DTGIGIP + L  LFR + QV +   R YGGTGLGLAI K+L E MG
Sbjct: 509 -------IQFAVEDTGIGIPIDRLDRLFRPFSQVDSSVRRHYGGTGLGLAISKKLAETMG 561

Query: 645 GRLTVTSKVHCGS 657
           GR+ V+S+   G+
Sbjct: 562 GRIWVSSRDETGA 574



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 90/171 (52%), Gaps = 35/171 (20%)

Query: 840  ISQSPSSSSAEVPETKPKPKP--------KILLVEDNKINVMVAKSMMKQLGHSIDVVNN 891
            +S  PS+++A   E  P   P        +ILL EDN +N  VA  ++K+LG+  DV  N
Sbjct: 736  LSVEPSATAAL--ENPPSSFPPLGSQNLLRILLAEDNAVNQKVALHLLKRLGYGADVAKN 793

Query: 892  GVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951
            G++ + A++ Q+YD+ILMDV MP MDGL AT+ IR             +G+ Q       
Sbjct: 794  GIQVLEALRQQSYDVILMDVQMPEMDGLTATQQIR------------RSGLPQPR----- 836

Query: 952  SNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                    IIAMTANA+    E C   GMD +VSKP+    L E L++  P
Sbjct: 837  --------IIAMTANAVQGDREACLEAGMDDYVSKPIRLPDLVEALQKCCP 879



 Score = 46.6 bits (109), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 24/135 (17%)

Query: 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
           P IL+V+D K    + +  ++ +G+ +    NG + + + Q    D++L+D  MP MDG 
Sbjct: 11  PLILVVDDAKTVRALLREHLESVGYQLAEAVNGEDCLKSFQQLRPDIVLLDAVMPGMDGF 70

Query: 920 KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
                +R               + Q M +          PI+ +T      S E  FA G
Sbjct: 71  NCCARLRR--------------LPQGMDT----------PILMITGLDDPSSVERAFAAG 106

Query: 980 MDSFVSKPVTFQKLK 994
              +++KP+ +  L+
Sbjct: 107 ATDYITKPIHWAVLR 121


>gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
 gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
          Length = 1035

 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 189/442 (42%), Gaps = 104/442 (23%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK--- 652
            + DTGIGI    +  LF+ + QV A   R+YGGTGLGL IC++LVE MGG++ V SK   
Sbjct: 657  IQDTGIGISAAGMNRLFKPFSQVDASTTRQYGGTGLGLVICQRLVERMGGQIWVESKKTG 716

Query: 653  ------------------VHCGSTFTFILPYQVSP--IEENSDDPDDLSD----MADQDS 688
                                 GS F F   + ++P    E +DD   L +    + D ++
Sbjct: 717  ESLVVGGTPLAVYESIPIAESGSVFYFTARFLLNPNPAPEPTDDTCYLENRRVLIVDDNA 776

Query: 689  VTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNN- 747
                + A   Q +   +  L + +G        P+++           +      P  + 
Sbjct: 777  TNRQILA--LQIKKWKMQPLVAESG--------PSALALLQQQGWVDLAILDLQMPEMDG 826

Query: 748  ----RQKETAPLE-DACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQ 802
                RQ   A  E     +  +  TL+E E +                       +S   
Sbjct: 827  VTLARQIRAAYGELPLILLTSLGNTLTESEKAL---------------------FSSLIS 865

Query: 803  NPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSS--SAEVPETKPKPKP 860
             P  +ST ++  N    +  KT  P        KP   + +PS     AE+P  +     
Sbjct: 866  KPVKQSTLYNALNSLFCEKQKTVSP--------KP---AAAPSFEHLKAELPPLR----- 909

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
             IL+ EDNK+N MVA  ++++LG+  D+  NG+E + AVQ Q YD+ILMD+ MP MDG+ 
Sbjct: 910  -ILVAEDNKVNQMVALRILEKLGYRGDIAANGLEVLDAVQRQPYDVILMDMQMPEMDGIT 968

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR +               G+++  P            IIAMTANA+    + C   GM
Sbjct: 969  ATREVTQLFQ----------GLKKPRPR-----------IIAMTANAMESDRQLCLDAGM 1007

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D +VSKP+  ++L   L Q  P
Sbjct: 1008 DDYVSKPIRLEELVRALRQCQP 1029



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 2/173 (1%)

Query: 345 EEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
           E+I+    ++  L       EE  RAK + LATMSHEIR+P+  ++ +  +L +T L+ +
Sbjct: 468 EDISQMMQQQELLEVARQAAEEASRAKSEFLATMSHEIRTPMNAIIGLTGLLLDTPLNPQ 527

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQK 462
           Q++ +  +  SGD +L +INDILD SK+ESG ++LE+  F  R  V+ VL   A+ + ++
Sbjct: 528 QQEFVNTIRLSGDALLGVINDILDFSKIESGKLELESYPFNLRTCVEEVLDLLASRAAER 587

Query: 463 ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
            + L   I   VP  VIGD+ R+RQ+L NLI NAIKFT +G V + +   P P
Sbjct: 588 EVELAAHIDSGVPCAVIGDMGRLRQVLVNLIGNAIKFTQKGNVTLYVKAKPMP 640


>gi|444323409|ref|XP_004182345.1| hypothetical protein TBLA_0I01680 [Tetrapisispora blattae CBS 6284]
 gi|387515392|emb|CCH62826.1| hypothetical protein TBLA_0I01680 [Tetrapisispora blattae CBS 6284]
          Length = 1214

 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 191/706 (27%), Positives = 310/706 (43%), Gaps = 122/706 (17%)

Query: 373  MLATMSHEIRSPLTGVVSMAEI-LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
             +A +SHE+R+PL G++ M  I +    +D  +  L  ++  SG+L+L ++ ++L  SK 
Sbjct: 539  FIANISHELRTPLNGILGMTAISMEEDDIDNIKSSL-KLIFRSGELLLHILTELLTFSKN 597

Query: 432  ESGVMKLEAAKFRPREV---VKHVLQTAAASLQKILMLEGDIADDVPIEVI-GDVLRIRQ 487
                 KLE   F   +V   +K +    A   Q + +    I +++   V+ GD  RI Q
Sbjct: 598  VLQRTKLEERDFCITDVALQIKSIFGKVAKD-QHVKLSIYLIPNEIRTLVLWGDSNRIIQ 656

Query: 488  ILTNLISNAIKFTP-EGKVGIKLYVVPE------------PPFAKEGLK----------- 523
            I+ NL+SNA+KFTP +GKV +++ ++ E              F K G +           
Sbjct: 657  IVMNLVSNALKFTPIDGKVSVRMSLLGEYDKEKSKAADYKEVFVKTGTEPEENYSKILQK 716

Query: 524  ---QKSKAYQSATDAVKEEKHQP----KSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPV 576
               +K  A +SA     EE+H      K+   S+ +   +        +   DD      
Sbjct: 717  LNTEKLIATRSARSCDNEERHNELIGEKNDIISNNHQSSNTTFDISIHNRTRDDTLSLLS 776

Query: 577  SHGNSMDEDL------------------------EATVWIRC-DVYDTGIGIPENALPTL 611
            +  +S DE +                        E   W+ C +V DTG GI      ++
Sbjct: 777  TSTSSYDETVFNDQFKKITGLQDHDEERLGVEIKEPKTWVICIEVEDTGPGIHPALQESV 836

Query: 612  FRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY-QVSPI 670
            F  ++Q     +R+YGGTGLGL+IC+QL  +M G + + SKV  GS FTF +P  Q   I
Sbjct: 837  FEPFVQGDQALSRQYGGTGLGLSICRQLATMMNGTMVLESKVGSGSKFTFTVPLTQTREI 896

Query: 671  EENSDDPDDLSDMADQDSVTDDVTAGFFQFQ-PRTLGS-LFSSNGTSRSKKLLPNSIGFA 728
                D+  D+++  D +           +F  P + G+ L +S+  SR  K   NS    
Sbjct: 897  VIGEDE--DINEFFDDEFNIYSKKNRKVKFAIPSSPGTTLANSSLKSRKSKGSLNSSFVG 954

Query: 729  SAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVS 788
                VN   E +Y+    N   E         +  ++ + S   +S      P  ++  +
Sbjct: 955  EIQNVNEAEEDAYNSKDINSSGE-------LKIRHISTSTSN-NNSIPSLDRPFLQSTGT 1006

Query: 789  RGKQCHVETTSWFQNPAT-ESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSS 847
                  +     F N AT ++ ++ E   ++  + K N    I +     + ++Q+  +S
Sbjct: 1007 ATSTMKIPVLKDFSNSATKDNVTNDEGKSDL--SKKGNSGGTIIQ-----EGVTQN--NS 1057

Query: 848  SAEVPETKPKPKPKILLVEDNKINVMVAKSMMK-QLGHSIDVVNNGVEAVHAVQ------ 900
            S  + E +     +IL+ EDN +N  V K M+K +   +ID+  +G EA   V+      
Sbjct: 1058 SIIIDEEEEDEGIRILVTEDNHVNQEVIKRMLKLEKLSNIDLACDGEEAYTKVKEITSIS 1117

Query: 901  ----CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
                   YDLI MDV MP MDGL++T+LIRS           E    +            
Sbjct: 1118 NPKKKNYYDLIFMDVQMPRMDGLESTKLIRS-----------ELKYTK------------ 1154

Query: 957  RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
              PI+A+TA A   + +EC   GMD F+SKP+   KLK+ L ++ P
Sbjct: 1155 --PIVALTAFADESNIKECLDVGMDGFLSKPIKRPKLKDILNEFCP 1198


>gi|350553534|ref|ZP_08922705.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodospira sibirica
           ATCC 700588]
 gi|349790355|gb|EGZ44269.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodospira sibirica
           ATCC 700588]
          Length = 1017

 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 188/434 (43%), Gaps = 89/434 (20%)

Query: 251 FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYV 310
           F     E ++GK+D ++F     ++  D  R V  + L     +++E E F     LI+ 
Sbjct: 437 FIGHRREQMIGKSDYDLFD----RQMADRLRVVDLQVLDTLERVSYEEEFFNQYGKLIHF 492

Query: 311 E----PVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEE 366
                P +  SGE IGV  +  D+TD+ R   ++ +   ++   +A E      +H  E 
Sbjct: 493 HTIKAPCYDASGEVIGVLGIARDITDRCRMESQLHERNTQL--YQANEMAHEMLLHANEM 550

Query: 367 TMRA-------KQMLATMSHEIRSPLTGVVSMAEILS-NTKLDREQRQLLGVMISSGDLV 418
           T +A          LA MSHEIR+PL G++  A+ILS +  L+ +QRQ +  +  SG  +
Sbjct: 551 TTKADTANHAKSAFLANMSHEIRTPLNGIIGFAQILSADQALNTKQRQQVQTIARSGQHL 610

Query: 419 LQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIE 477
           L LINDILDLSK+E+G +KL+   F   ++++ +    AA  Q K L    + A D P  
Sbjct: 611 LGLINDILDLSKIEAGRLKLDPKPFVLNDLLRDMQTLFAARCQDKGLYFHIECAPDTPQR 670

Query: 478 VIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVK 537
              D+ ++RQIL NL+SNA+KFT  G V +++++                          
Sbjct: 671 FNNDLAKLRQILINLLSNAVKFTDSGGVTLRVWM-------------------------- 704

Query: 538 EEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVY 597
            + H        D   F  +  G G   H+  D    P    + +            DV 
Sbjct: 705 -QAHAGAEAAQLDALYFEVRDTGIGIPPHEQGDCLFEPFYQAHQLP-----------DVS 752

Query: 598 DTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGS 657
            +G+G+P                              I ++LV L+GG + + S    GS
Sbjct: 753 GSGLGLP------------------------------ISQRLVALLGGEIQLESHPAQGS 782

Query: 658 TFTFILPYQVSPIE 671
            F F +  Q  P+E
Sbjct: 783 CFRFYI--QAHPLE 794



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 25/133 (18%)

Query: 856 PKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMP 914
           P  +P K+L+V+D   N  V   +++ +G  +    NG EAV A      D ILMD+ MP
Sbjct: 813 PCAQPLKLLIVDDKADNRDVLLELLEPVGFQVLQACNGKEAVTAFALHRPDAILMDLRMP 872

Query: 915 VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE 974
            MDG +AT  IR                        +S   ++ PII  TA+ALS     
Sbjct: 873 EMDGYQATLHIR------------------------ASPQGQQTPIIITTASALSSDRRR 908

Query: 975 CFANGMDSFVSKP 987
               G D+ + KP
Sbjct: 909 IETLGADACLFKP 921


>gi|395761501|ref|ZP_10442170.1| multi-sensor hybrid histidine kinase [Janthinobacterium lividum PAMC
            25724]
          Length = 966

 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 124/421 (29%), Positives = 192/421 (45%), Gaps = 64/421 (15%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            V +R +V+DTGIG+   A   +F  + Q      RK+GGTGLGL I KQLVELMGG + V
Sbjct: 449  VGLRFEVHDTGIGVSNEAQARIFESFSQADGSTTRKHGGTGLGLTISKQLVELMGGTIGV 508

Query: 650  TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLF 709
             + +  GS    I  ++V+  ++   D DD S               F     R L +L 
Sbjct: 509  DNALTQGS----IFWFEVN-FDKRRVDSDDPS---------------FNLKTTRGLRALI 548

Query: 710  SSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLS 769
              + T  ++ +L   +  AS H V+  ++T+    S+  +K  A  +     A     + 
Sbjct: 549  VDH-TPATRAVLERQL--ASWHIVSDSADTA----SDCLRKLRAAAQAGTPYAVALLDME 601

Query: 770  EPESS-FSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQ 828
             P +S  + +   +++  ++  K   + T     +P           RE     +  +P 
Sbjct: 602  LPRTSGLALAATIKSDPLLAELKLLLLSTQRTAADPVQR--------REAGVAFQLIKPA 653

Query: 829  KICEMQE---KPDRISQS-----PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMK 880
            + C++ +    P R   S     P ++   V     + + ++LL EDN +NV VA +M+ 
Sbjct: 654  RECDLFDCIVTPPRAGDSLRLVAPHAARPAVRHPGRRQRRRVLLAEDNHVNVEVALAMLD 713

Query: 881  QLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940
             LG  +    NG EA+ A Q +++DLILMD  MPVMDG  AT  IR  E           
Sbjct: 714  SLGLDVVCARNGEEALQAAQAEDFDLILMDCQMPVMDGFAATAEIRRHEQ---------- 763

Query: 941  GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                         H + +PI+A+TANAL    E C A GMD ++SKP T Q L   + ++
Sbjct: 764  ----------QCGHARVLPIVAITANALQGDREACLAAGMDDYLSKPFTQQDLGHTIARW 813

Query: 1001 F 1001
             
Sbjct: 814  I 814



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/238 (36%), Positives = 133/238 (55%), Gaps = 12/238 (5%)

Query: 329 DVTDQVRKREK-MAKLREEIAVQKAKET-ELNKTIHITEETMRAKQ-MLATMSHEIRSPL 385
           D+  Q+  R+  +A  R+++  Q +  T +L K     E   +AK   LATMSHEIR+P+
Sbjct: 255 DMLAQIDSRDSTLANYRDQLERQVSVRTAQLEKAKDAAEAASQAKSAFLATMSHEIRTPM 314

Query: 386 TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445
            GV+ M E+L  + L  +QR    ++  SG  +L +INDILD SK+E+G + +E  +F  
Sbjct: 315 NGVLGMTELLLASALSPQQRHYTSMVQRSGQNLLVIINDILDFSKIEAGKLSVEYIRFNF 374

Query: 446 REV---VKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
           RE+   ++HV    A +  K + LE DIA D+PI + GD  R+RQI+ NL+ NAIKFT  
Sbjct: 375 RELLDDIEHVFTPQAEA--KNISLEFDIAFDIPIAICGDPYRLRQIIVNLLGNAIKFTET 432

Query: 503 GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHG 560
           GKV +K+ V  E      G+  + + + +    V  E      ++ S  +G   +KHG
Sbjct: 433 GKVTVKVAVCSED---APGVGLRFEVHDTGI-GVSNEAQARIFESFSQADGSTTRKHG 486


>gi|414079219|ref|YP_007000643.1| multi-sensor hybrid histidine kinase [Anabaena sp. 90]
 gi|413972498|gb|AFW96586.1| multi-sensor hybrid histidine kinase [Anabaena sp. 90]
          Length = 1311

 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 114/350 (32%), Positives = 164/350 (46%), Gaps = 78/350 (22%)

Query: 330  VTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGV 388
            + DQ+      AKL E   + + +E E+ +     E  ++AK   LA MSHEIR+P+ GV
Sbjct: 740  LADQIGIALVQAKLLESEIIHR-QELEIAR--QEAESALQAKSSFLANMSHEIRTPMNGV 796

Query: 389  VSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448
            + M  +L  T L+ EQ+  L  + +SGD +L LIN+ILDLSK+E+G M LE   F     
Sbjct: 797  LGMTSLLLETPLNPEQQDFLETVRTSGDALLSLINEILDLSKLEAGKMMLETLDFNLSTC 856

Query: 449  VKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
            ++ V++  A     K L +   I  DVPI + GD  R+RQ++ NL+ N IKFT +GKV +
Sbjct: 857  IQEVIELLAPQAHDKGLEIAALIPADVPIYIQGDASRLRQVIMNLMGNGIKFTSQGKVIV 916

Query: 508  KLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHK 567
            +L ++ E                  TD            TA+ Q    D   G   +D  
Sbjct: 917  QLELISE------------------TD-----------DTATIQFAIIDTGIGITTEDKN 947

Query: 568  HDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYG 627
            +   P T V                                 ++ RKY           G
Sbjct: 948  NLFQPFTQVD-------------------------------ASITRKY-----------G 965

Query: 628  GTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSP--IEENSD 675
            GTGLGLAIC+QLV LMGG++ + S++  GS F F L +   P  + +N D
Sbjct: 966  GTGLGLAICQQLVTLMGGKIGLNSEIGKGSKFWFNLSFTKQPESVSQNQD 1015



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 82/164 (50%), Gaps = 21/164 (12%)

Query: 839  RISQSPSSSSAEVP--ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
            +I+ S  + + E+P    K   K K+LL EDN +N  V    ++ LG+  D V NG E +
Sbjct: 1149 KINNSQIAINEELPAISNKNTSKLKLLLAEDNLVNQKVFLKQLQNLGYQADAVANGQEVL 1208

Query: 897  HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
              +    YDLI MD  MP++DGL AT+ IR                    P S    H +
Sbjct: 1209 ELLDKIAYDLIFMDCQMPILDGLAATKEIRR------------------RPLSSFPKHQQ 1250

Query: 957  RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             + +IA+TANA+ E  + C   GMD ++SKPV   KL   LE +
Sbjct: 1251 PV-VIAITANAMKEDQKICLDAGMDDYLSKPVAKDKLAAMLELW 1293


>gi|344941406|ref|ZP_08780694.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|344262598|gb|EGW22869.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 2035

 Score =  142 bits (359), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 130/491 (26%), Positives = 225/491 (45%), Gaps = 96/491 (19%)

Query: 179  EKMLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQ 238
            ++M EA   REQ L   LN S   LE +   V E ++ L++   +L  ++   P+    +
Sbjct: 1390 KRMEEALANREQELC-ALNAS---LELR---VLERTEELRQQTRYLRTMIDTLPMFAWLK 1442

Query: 239  DKELRYRFIYNHFP---SLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREIT 295
            D + R+  +        S + ++++GK+D++++     +  +    EV+  G     E  
Sbjct: 1443 DTDSRFLVVNQALAAACSHNVDELVGKSDLDVWPREHAETYRADDAEVMATGQRKAVEEP 1502

Query: 296  FETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKET 355
            F     G+     +  PV  + G  +G   +  D++             E  AV+ A+E 
Sbjct: 1503 FVDARDGAIWVETFKAPVVDEDGRVLGTVGVSRDIS-------------ERKAVEAAREA 1549

Query: 356  ELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEIL-SNTKLDREQRQLLGVMIS 413
             L +     E   R + + +A MSHE+R+PL G++  ++IL    +L+  Q  ++ VM  
Sbjct: 1550 ALVEA----ERLARLRSEFMARMSHELRTPLNGILGYSQILLGENRLNERQHVMVNVMQQ 1605

Query: 414  SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIAD 472
            SG+ +L LINDILD +K+E+G  +L  +       + ++    +    QK L    DIA 
Sbjct: 1606 SGEHLLSLINDILDFAKIEAGKQELSLSDIHLPSFLHNLADIVSVKAEQKQLAFICDIAA 1665

Query: 473  DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSA 532
             VP  +  D +R++Q+L NL+SNA+K++ +G++ +++ V+ + PF++             
Sbjct: 1666 AVPEGIRADDMRLKQVLLNLLSNAVKYSEQGQISLRVTVLKK-PFSE------------- 1711

Query: 533  TDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWI 592
                                                    G PV  G            +
Sbjct: 1712 ----------------------------------------GAPVELGR-----------L 1720

Query: 593  RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
            R ++ D+GIGI    L ++F+ + Q +AD     GGTGLGL I ++LV LMG  + V+S+
Sbjct: 1721 RFEIQDSGIGIEAGQLESIFKPFEQ-AADIQYSGGGTGLGLVISRELVRLMGSEIFVSSR 1779

Query: 653  VHCGSTFTFIL 663
            V  GSTF F L
Sbjct: 1780 VGEGSTFWFDL 1790



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 24/136 (17%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            P+ ++L+V+D ++N  +   M+ +LG   D   NG   + +V+ +  DLIL+D+ MP M 
Sbjct: 1814 PRQRVLVVDDAEVNRALLIDMLCRLGFETDEAANGRVCLDSVETRKPDLILLDMVMPEMG 1873

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            GL+  R +R                   MP  G +      PI+A++A A      E  A
Sbjct: 1874 GLETARRLRQ------------------MPGFGQT------PIVAVSAGASGIDVAEAMA 1909

Query: 978  NGMDSFVSKPVTFQKL 993
             G++ F++KP+  ++L
Sbjct: 1910 AGVNVFLTKPIEIKRL 1925


>gi|320163935|gb|EFW40834.1| response regulator receiver domain-containing protein [Capsaspora
           owczarzaki ATCC 30864]
          Length = 827

 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 167/341 (48%), Gaps = 24/341 (7%)

Query: 329 DVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGV 388
           D+TD   KR++    +E I    A +   N+              L  MSHE+++PL G+
Sbjct: 254 DITD---KRQRQIVEQEAILTLNAAKVANNR-------------FLCNMSHELKTPLNGI 297

Query: 389 VSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448
           + MA+ LSN   D +Q + L +++ SG  +++ +NDIL LS + S  ++L+ ++F  R+V
Sbjct: 298 MGMAQCLSNVITDEQQIEWLQMLMDSGASLVENVNDILLLSTINSNEVELKMSRFSLRDV 357

Query: 449 VKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           +   L       Q K L L   + ++VP  V+ D   I QIL+ ++ NAIKFT EG V +
Sbjct: 358 LVEQLDKLRPRAQAKQLPLPFSVDENVPDMVVSDRSLIEQILSRILRNAIKFTSEGSVQV 417

Query: 508 KLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHK 567
            + +         G    ++  Q  T   + E     S +       ++       Q H+
Sbjct: 418 HVQLDSNAASKSGG----ARLLQPMTSKTQMEDVAQASTSGFIPYARYNSMDESQEQTHQ 473

Query: 568 HDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYG 627
              DP        +   ++     IR  V DTGIG+ E  L  +F ++ Q  +   RKYG
Sbjct: 474 PAKDPA---QEAAAPKIEVSIPTSIRIQVTDTGIGMSELTLSRVFERFFQADSSADRKYG 530

Query: 628 GTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           G G GLAICK L+EL+ G +  +S  + G+T + +LP+ ++
Sbjct: 531 GMGSGLAICKGLIELLNGAIQASSVENQGTTISIVLPFNLA 571



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 111/246 (45%), Gaps = 38/246 (15%)

Query: 764  VAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQ-TS 822
            ++ TL  P   FS + + E+   +  G   H+ +     +P  E+   + +     + TS
Sbjct: 606  LSTTLPAPSMDFSATAQAESSNGMQPGS--HLVSGPLTPDPTDEAQPLAASTSLPPESTS 663

Query: 823  KTNEPQKICEMQEKPDRISQSPSSSSAEVP------ETKPKP-KPKILLVEDNKINVMVA 875
            +T  P         PD   + PS SS   P      +  P P + +IL+V+DN +N  V 
Sbjct: 664  RTIVPVPAV----NPD--VECPSCSSPAHPIQRALRKMGPSPQRARILVVDDNNVNQKVV 717

Query: 876  KSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
             +++ +LG       NG EA+  +    YD++LMD  MPV+DG +ATR +R+ E   N  
Sbjct: 718  VTILDKLGFRTHSAFNGQEALDMMDEHEYDVVLMDCQMPVLDGYEATRRLRAREHGTN-- 775

Query: 936  AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKE 995
                                + I +IA+TAN + E AE C A GMD ++ KPV    L  
Sbjct: 776  --------------------RHITVIAVTANDVPEDAELCLAAGMDHYLPKPVNQASLLG 815

Query: 996  CLEQYF 1001
             L  + 
Sbjct: 816  LLADWM 821


>gi|145350316|ref|XP_001419557.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579789|gb|ABO97850.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 550

 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 159/318 (50%), Gaps = 65/318 (20%)

Query: 351 KAKETELN--KTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQL 407
           K ++ ELN  K +   E    AK + LA MSHEIR+PL G++++ ++L +T LDR QR+ 
Sbjct: 3   KRRDDELNALKMMARAEAATEAKSRFLAHMSHEIRTPLNGLIAVGQLLEDTNLDRLQREY 62

Query: 408 LGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILML 466
           +  + +SG+ +  LI+DILD S+VE+  + L+   F P  V+ +V++ TA  S +K + +
Sbjct: 63  VSTVRTSGETLQALISDILDFSRVEADKLVLQCEPFHPEVVIGNVMEITAMQSAKKKINI 122

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKS 526
              +   VP  V+GD +R++Q+L N ISNAIKFT  G + I+LY+               
Sbjct: 123 GYHVDIGVPKIVMGDAMRLQQVLLNSISNAIKFTDAGNIMIRLYL--------------- 167

Query: 527 KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDL 586
                     +E+  +P     SD          E +  H +  D G             
Sbjct: 168 ---------GREDTTEPTDDMTSDN---------ESWFLHFYVKDTG------------- 196

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
                         +G+ ++ +  +F+ + QV     RKY GTGLGLAI ++L E MGG 
Sbjct: 197 --------------MGLDQSTIHKIFQSFQQVETGATRKYDGTGLGLAISRKLCEAMGGT 242

Query: 647 LTVTSK-VHCGSTFTFIL 663
           +   S+ +  GSTF F +
Sbjct: 243 MWAESQGLGKGSTFHFCI 260



 Score = 83.2 bits (204), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 81/143 (56%), Gaps = 30/143 (20%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQC-----QNYDLILMDVCMP 914
           +ILL ED+ +N+ VAK+++ +LGHS +    +G +A+  VQ        +D++LMD+ MP
Sbjct: 432 RILLAEDHPVNMKVAKAVLSRLGHSDVTGAKDGADALAKVQADPAGLDAFDIVLMDLHMP 491

Query: 915 VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE 974
           +M G++ T+ +R                    P         ++PIIA+TA+A+ ES +E
Sbjct: 492 IMGGIECTQQLRKL-----------------YPDC-------KVPIIAVTADAIEESRQE 527

Query: 975 CFANGMDSFVSKPVTFQKLKECL 997
           CF  G DS+++KP   +++++ +
Sbjct: 528 CFDAGFDSYLTKPFRIEQIQKAI 550


>gi|428319138|ref|YP_007117020.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
            7112]
 gi|428242818|gb|AFZ08604.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
            7112]
          Length = 1831

 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/336 (32%), Positives = 162/336 (48%), Gaps = 49/336 (14%)

Query: 329  DVTDQVRKREKMAKLREEIAVQKAKETELNKTI----HITEETMRAK-QMLATMSHEIRS 383
            DV  QV      A+L E    ++ +  E N+ +       E   RAK + LATMSHEIR+
Sbjct: 996  DVAAQVGITLAQAQLLETEVQRQRQLAEQNEALEHARQAAEVANRAKSEFLATMSHEIRT 1055

Query: 384  PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
            P+  V+ M  +L + +L  EQR  +  + +SGD +L +INDILD SK+ESG + LE + F
Sbjct: 1056 PMNAVIGMTGLLLDMELTPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLDLERSPF 1115

Query: 444  RPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
              +  ++  L+  A  + +K L L   I D VP  ++GDV R+RQIL NL+ NA+KFT  
Sbjct: 1116 ELQNCIEESLELLAPRASEKGLELAYFIDDSVPKNILGDVTRLRQILVNLLGNAVKFTES 1175

Query: 503  GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEG 562
            G++ +                   K  Q A ++  E+ +  + Q      G   ++    
Sbjct: 1176 GEIVV--------------CCTARKIEQIAANSSPEKINILEPQPLLINQGELARRRQYE 1221

Query: 563  YQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADH 622
             Q    D   G P    + MD                           LF+ + QV A  
Sbjct: 1222 IQFAVQDTGIGIP---PDRMDR--------------------------LFKAFSQVDAST 1252

Query: 623  ARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGST 658
             R YGGTGLGLAI ++L ++MGG + V S+V  GS+
Sbjct: 1253 TRHYGGTGLGLAISQRLSDMMGGTMWVVSQVSPGSS 1288



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 25/170 (14%)

Query: 833  MQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNG 892
            +Q  P  + Q  ++S+ +  +     + +ILL EDN +N  VA  ++ ++G+  D+  NG
Sbjct: 1519 VQRTPAVLRQVAANSAGQ--DATNSSQIRILLAEDNVVNQKVATHLLDRIGYRADIAANG 1576

Query: 893  VEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
            +E + A++ Q+YD++LMDV MP MDGL+ATR I        W A                
Sbjct: 1577 LEVLEALKRQSYDVVLMDVQMPNMDGLEATRRI-----CQEWPAN--------------- 1616

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
               K+  IIAMTANA+    E+C A GMD +++KPV  ++L   L +  P
Sbjct: 1617 ---KKPRIIAMTANAMQGDREKCLAAGMDDYITKPVRREELAIALSKCSP 1663


>gi|386021394|ref|YP_005939418.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            DSM 4166]
 gi|327481366|gb|AEA84676.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            DSM 4166]
          Length = 908

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 163/638 (25%), Positives = 272/638 (42%), Gaps = 145/638 (22%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            + LA MSHEIR+PL G++   ++L  + L   Q+  LG +  S D +L +IN+ILD S  
Sbjct: 276  EFLANMSHEIRTPLNGILGFTQLLQKSDLTPRQQDYLGTIEKSADSLLGIINEILDFS-- 333

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
                 K+EA K         VL T   +L+       D+ +D  + ++      +Q+   
Sbjct: 334  -----KIEAGKL--------VLDTIPFNLR-------DLIEDT-LTILAPAAHTKQL--E 370

Query: 492  LISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQ 551
            L+S   + TP   VG             + L+ K       ++A+K              
Sbjct: 371  LVSLVYRDTPLSLVG-------------DPLRLKQVLTNLISNAIK-------------- 403

Query: 552  NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTL 611
              F ++               GT        D++ E    +R  V DTGIG+ +  L  L
Sbjct: 404  --FTNE---------------GTIAVRAMVEDDNAE-RAQLRISVQDTGIGLTDQDLRAL 445

Query: 612  FRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIE 671
            F+ + Q     +R+ GGTGLGL I K+L+E MGG + V S    GS F   L      + 
Sbjct: 446  FQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGSEFWISLS-----LP 500

Query: 672  ENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAH 731
            +  DD +DL   A                Q R +  L       ++ +   +S+G     
Sbjct: 501  KARDDAEDLPHPA---------------LQGRRIALLEQHPLARQALQHQLHSLGL---- 541

Query: 732  KVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGK 791
            +V  F        + + +++++ L D  +V  V     EP++      E E     + G 
Sbjct: 542  EVQTFDTLDQMQSTISARRQSSELID-LAVLGVTNREIEPQALSRRLAEIE-----ALGC 595

Query: 792  QCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQ--------- 842
            +C V        P TE  S+ +A           E     ++Q KP    +         
Sbjct: 596  KCVVLC------PTTEQASYHDA---------LPEAHSYTQLQGKPACTRKLQRVLVELV 640

Query: 843  SPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
             P+ + AE     P    ++L V+DN  N+++ K+++  +G  +  V+NG  A+ AV+  
Sbjct: 641  RPNQAYAEPAAAAPSRAAQVLCVDDNPANLLLVKTLLGDMGADVVAVDNGPAALEAVKQH 700

Query: 903  NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
            ++DL+LMDV MP MDG + T  IR       W        EQA  S+        +PI+A
Sbjct: 701  SFDLVLMDVQMPGMDGRQTTEAIR------QW--------EQASSSTP-------LPIVA 739

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            +TA+AL+        +G+D +++KP++ ++L + + ++
Sbjct: 740  LTAHALANEKRSLLQSGLDDYLTKPISDRQLAQVVLKW 777


>gi|428201665|ref|YP_007080254.1| PAS domain-containing protein [Pleurocapsa sp. PCC 7327]
 gi|427979097|gb|AFY76697.1| PAS domain S-box [Pleurocapsa sp. PCC 7327]
          Length = 1444

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 191/431 (44%), Gaps = 67/431 (15%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            I+  V DTGIGI       LF+ + Q +A   RKYGGTGLGLAICK+L ++MGG + + S
Sbjct: 921  IQFMVKDTGIGIAPQQQRFLFQSFSQANASVTRKYGGTGLGLAICKRLAKMMGGSIWMES 980

Query: 652  K---------------------VHCGSTFTFILPYQVSPIEENSDDPDDLSDM-ADQDSV 689
                                     GSTF F +  + +P        D  + +   +  +
Sbjct: 981  HGTVAGAAPPRWLRSQENWDTISTVGSTFYFTIAAKAAPFSSTLTPSDCQAQLKGKRILI 1040

Query: 690  TDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQ 749
             DD            L  L  S G      +LP +    S          S+     + Q
Sbjct: 1041 VDDNPVN-----RELLTQLTQSWG------MLPRAADSGSQALCWLRQGESFDLAILDLQ 1089

Query: 750  KETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATEST 809
                P  +   +AE  + L E  +         N +     K   V+  +W QNP  +S 
Sbjct: 1090 ---MPKMNGIELAESIQALPECRALPLMMLTAVNLSPKELQKSTPVQFVAWLQNPVKKSQ 1146

Query: 810  SHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP-KILLVEDN 868
             + +A  ++      +E     EM      I+Q+ SSS+ ++  T  KP P +ILL EDN
Sbjct: 1147 LY-DALVQIFWQKSVSETSASSEMA-----IAQT-SSSNQKIETTVSKPFPLRILLAEDN 1199

Query: 869  KINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSF 928
             IN  VA  ++++LG+  DV  NG EA+ A++   YD++LMDV MP MDGL A + I   
Sbjct: 1200 SINQQVALLILQKLGYRADVAGNGWEAIRALRQAPYDVVLMDVEMPEMDGLTAAQRI--- 1256

Query: 929  EDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
                          E+  PS       +R  +IA+TA A+    E+C A GM+ ++SKP+
Sbjct: 1257 -------------AEEWKPS-------QRPWLIAVTAYAMKGDREKCLAVGMNDYISKPI 1296

Query: 989  TFQKLKECLEQ 999
               +L + LE+
Sbjct: 1297 REIELLQALEK 1307



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 88/139 (63%), Gaps = 1/139 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LATMSHEIR+P+  V+ MA +L +T L  +QRQ    + SS + +L ++NDILD SK+
Sbjct: 769 EFLATMSHEIRTPMNAVIGMAGLLLDTDLSSQQRQFAETIRSSSEALLVILNDILDFSKI 828

Query: 432 ESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  +  V+  L      ++ K L +   I   VP  ++GD+ R+RQIL 
Sbjct: 829 ESGKLELEAYPFEVQSCVEEALNLIVPKAVAKNLQVIYQIDPQVPRAIVGDITRVRQILV 888

Query: 491 NLISNAIKFTPEGKVGIKL 509
           NL+ NA+KFT  G++ + +
Sbjct: 889 NLLGNAVKFTDAGEIRVAV 907


>gi|91714551|gb|ABE54477.1| Hpt sensor hybrid histidine kinase [Shewanella denitrificans OS217]
          Length = 972

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 188/430 (43%), Gaps = 101/430 (23%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            V +RC+V DTGIGI ++    LF+ + Q  +  +R++GGTGLGL I K+L+  MGG++  
Sbjct: 493  VTLRCEVIDTGIGIDDSQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGF 552

Query: 650  TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLF 709
            TS    GS F FILP  +S  +     P    D+    SV          ++PRTL    
Sbjct: 553  TSSSEKGSNFWFILPLNLSQFQIGEVLP---MDVLHGKSV--------LLYEPRTL---- 597

Query: 710  SSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLS 769
                 + +++L+   +   S                             CS+ E+ +TL+
Sbjct: 598  --TRETLNRRLISWQLSLTSV----------------------------CSIDELTQTLA 627

Query: 770  EPESSFSHSPEPENETEVSRGKQCH-VETTSWFQNPATESTSHSEANREMIQTSKTNEPQ 828
            +PE  + ++              CH  +TT           + S+A   ++         
Sbjct: 628  KPEPHYDYAL-----------ISCHGFDTTQ--ALGQQLQQARSKATSLILLHDCFEHET 674

Query: 829  KICEMQEKPDRISQSPSSSSAE-------------VPETKP-----KPKPKILLVEDNKI 870
             + +++   D +  +P S  A              +PE  P     + +  +L V+DN  
Sbjct: 675  MVSQLRNSVDILVITPISDYALARQLIYPPAKNLIIPELAPEQSYQRQRMSVLAVDDNPA 734

Query: 871  NVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFED 930
            N+M+  ++++++  ++   + G  AV   + Q +DLI MD+ MP +DGL ATRLIR    
Sbjct: 735  NLMLIDTLLQEVVTNVVTASRGETAVELAKGQQFDLIFMDIQMPGIDGLAATRLIR---- 790

Query: 931  TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTF 990
                                S N  +  PIIA+TA+ALSE  E    +GMD ++ KP+  
Sbjct: 791  ------------------QASMN--RNTPIIAVTAHALSEEKESILNSGMDGYLPKPIDE 830

Query: 991  QKLKECLEQY 1000
              LK  +E++
Sbjct: 831  NSLKAVIERW 840



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 98/174 (56%), Gaps = 2/174 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           LRE +   + +  EL+      +E  + K + LA MSHE+R+PL GV+  A  L  T L 
Sbjct: 315 LRETLEQIEIQNVELDLAKKRAQEASQIKSEFLANMSHELRTPLNGVIGFARQLIKTPLH 374

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
             Q   +  +  S   +L +INDILD SK+E+G M+LE   F  RE V   +   A S Q
Sbjct: 375 ASQLDYIKTIDRSATNLLGIINDILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQ 434

Query: 462 -KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
            K L L  DI ++VP  V GD +R+ QI+TNL+ NAIKFT  G V  K+ +V E
Sbjct: 435 AKGLELVIDIDENVPEHVSGDAMRVNQIITNLVGNAIKFTDSGSVVFKVILVAE 488


>gi|162210777|ref|YP_562200.2| hybrid sensory histidine kinase BarA [Shewanella denitrificans OS217]
          Length = 950

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 188/430 (43%), Gaps = 101/430 (23%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            V +RC+V DTGIGI ++    LF+ + Q  +  +R++GGTGLGL I K+L+  MGG++  
Sbjct: 471  VTLRCEVIDTGIGIDDSQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGF 530

Query: 650  TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLF 709
            TS    GS F FILP  +S  +     P    D+    SV          ++PRTL    
Sbjct: 531  TSSSEKGSNFWFILPLNLSQFQIGEVLP---MDVLHGKSV--------LLYEPRTL---- 575

Query: 710  SSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLS 769
                 + +++L+   +   S                             CS+ E+ +TL+
Sbjct: 576  --TRETLNRRLISWQLSLTSV----------------------------CSIDELTQTLA 605

Query: 770  EPESSFSHSPEPENETEVSRGKQCH-VETTSWFQNPATESTSHSEANREMIQTSKTNEPQ 828
            +PE  + ++              CH  +TT           + S+A   ++         
Sbjct: 606  KPEPHYDYAL-----------ISCHGFDTTQ--ALGQQLQQARSKATSLILLHDCFEHET 652

Query: 829  KICEMQEKPDRISQSPSSSSAE-------------VPETKP-----KPKPKILLVEDNKI 870
             + +++   D +  +P S  A              +PE  P     + +  +L V+DN  
Sbjct: 653  MVSQLRNSVDILVITPISDYALARQLIYPPAKNLIIPELAPEQSYQRQRMSVLAVDDNPA 712

Query: 871  NVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFED 930
            N+M+  ++++++  ++   + G  AV   + Q +DLI MD+ MP +DGL ATRLIR    
Sbjct: 713  NLMLIDTLLQEVVTNVVTASRGETAVELAKGQQFDLIFMDIQMPGIDGLAATRLIR---- 768

Query: 931  TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTF 990
                                S N  +  PIIA+TA+ALSE  E    +GMD ++ KP+  
Sbjct: 769  ------------------QASMN--RNTPIIAVTAHALSEEKESILNSGMDGYLPKPIDE 808

Query: 991  QKLKECLEQY 1000
              LK  +E++
Sbjct: 809  NSLKAVIERW 818



 Score =  109 bits (272), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 98/174 (56%), Gaps = 2/174 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           LRE +   + +  EL+      +E  + K + LA MSHE+R+PL GV+  A  L  T L 
Sbjct: 293 LRETLEQIEIQNVELDLAKKRAQEASQIKSEFLANMSHELRTPLNGVIGFARQLIKTPLH 352

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
             Q   +  +  S   +L +INDILD SK+E+G M+LE   F  RE V   +   A S Q
Sbjct: 353 ASQLDYIKTIDRSATNLLGIINDILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQ 412

Query: 462 -KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
            K L L  DI ++VP  V GD +R+ QI+TNL+ NAIKFT  G V  K+ +V E
Sbjct: 413 AKGLELVIDIDENVPEHVSGDAMRVNQIITNLVGNAIKFTDSGSVVFKVILVAE 466


>gi|418063333|ref|ZP_12701026.1| PAS/PAC sensor signal transduction histidine kinase, partial
           [Methylobacterium extorquens DSM 13060]
 gi|373559802|gb|EHP86085.1| PAS/PAC sensor signal transduction histidine kinase, partial
           [Methylobacterium extorquens DSM 13060]
          Length = 478

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 168/365 (46%), Gaps = 96/365 (26%)

Query: 317 SGETIGVNYM--GMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQML 374
           SG   G N++  G DVT +V    + A++ +E A  +A+   + K+           + L
Sbjct: 139 SGSVDGPNWLRAGQDVTARV----EAARVLDE-AKSRAEAANVAKS-----------RFL 182

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           AT+SHE+R+PL G++ MA++L +T+LD EQR  +    +SG  +L L++ ILD S++E+G
Sbjct: 183 ATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGLVDGILDFSRIEAG 242

Query: 435 VMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493
            + L A  F    +V+ V++  A   Q K L +  DIADD+    +GD  R+RQIL NL 
Sbjct: 243 RLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLA 302

Query: 494 SNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNG 553
            NAIKFT  G VG+ L        A+ G                                
Sbjct: 303 GNAIKFTQTGGVGVSL--------ARSG-------------------------------- 322

Query: 554 FHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFR 613
              +  GEG      D  PG                             IPE  +P LF 
Sbjct: 323 ---EGQGEGLVLTVEDTGPG-----------------------------IPEERIPILFE 350

Query: 614 KYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEEN 673
           ++ Q   D +  + GTGLGLAI ++LVE M G +   S V  GSTF  +LP    P  E 
Sbjct: 351 EFEQ--GDDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVMLPL---PAAEG 405

Query: 674 SDDPD 678
           +  P+
Sbjct: 406 AMSPE 410


>gi|359463382|ref|ZP_09251945.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris sp. CCMEE 5410]
          Length = 755

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 189/424 (44%), Gaps = 89/424 (20%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTG+GIP      LF+ + QV +   RK+GGTGLGLAICK+L ELMGGR+ V S+   
Sbjct: 394  VRDTGMGIPAERQNRLFKSFSQVDSSTTRKFGGTGLGLAICKRLSELMGGRIWVESEEGQ 453

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDS---VTDDVTAGFFQFQPRTLGSLFSSN 712
            GST  F    Q    E+ +     L  +  +D    V DD          R L       
Sbjct: 454  GST--FAFTIQAEETEDTTVVAQSLPAVTLKDKRVLVVDDNDT-----NQRVL------T 500

Query: 713  GTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPE 772
              + S K+ P     AS ++  G  E +  F       +  P  D  ++A+  +  S P 
Sbjct: 501  LQTESWKMKPQVA--ASGYEALGLLEHAGPFDIAILDMQM-PEMDGLTLAQ--KIRSHPR 555

Query: 773  ---------SSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREM----I 819
                     +S   +P+  +   +          ++W   P  +S  ++   + +    +
Sbjct: 556  GANFPMVMLTSIGQAPDLAHHKSLF---------SAWLNKPIKQSQLYNALVKSLTGNEV 606

Query: 820  QTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSM 878
            +T  +  PQ   EM ++                       P KILL EDN +N  +A  +
Sbjct: 607  KTQSSTAPQLDTEMADR----------------------HPLKILLAEDNPVNQKLAVLI 644

Query: 879  MKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938
            + ++G+  DVV NG+E + A++ Q+YD+ILMDV MP MDGL AT                
Sbjct: 645  LAKMGYRPDVVGNGLEVLQALKRQSYDVILMDVNMPEMDGLTAT---------------- 688

Query: 939  EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
               I Q++ S       +R  IIAMTANA+    E+C   GMD +V+KP+  Q+L   LE
Sbjct: 689  -THIYQSVMSE------ERPRIIAMTANAMQGDREKCLDVGMDDYVTKPINIQELVVALE 741

Query: 999  QYFP 1002
               P
Sbjct: 742  NSEP 745



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 93/149 (62%), Gaps = 4/149 (2%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+P+ GV+ M  +L +T+L  +Q++    +  SGD +L LINDILD SK+E
Sbjct: 239 FLAMMSHEIRTPMNGVIGMTGLLLDTELTPQQQEYTETIRKSGDSLLTLINDILDYSKIE 298

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G + LE   F  R  V+  L+  A+ +  K + L G +  DVP  ++GDV R+RQIL N
Sbjct: 299 AGKLDLEKQAFNVRVCVEDALELVASRVGPKEIELAGVVEPDVPQAILGDVTRLRQILVN 358

Query: 492 LISNAIKFTPEGKVGIKLYVVPEPPFAKE 520
           L+ NAIKFT  G+V +    V   PFA +
Sbjct: 359 LLGNAIKFTQSGEVVVN---VSAEPFAAD 384


>gi|146283013|ref|YP_001173166.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            A1501]
 gi|145571218|gb|ABP80324.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            A1501]
          Length = 906

 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 163/638 (25%), Positives = 272/638 (42%), Gaps = 145/638 (22%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            + LA MSHEIR+PL G++   ++L  + L   Q+  LG +  S D +L +IN+ILD S  
Sbjct: 274  EFLANMSHEIRTPLNGILGFTQLLQKSDLTPRQQDYLGTIEKSADSLLGIINEILDFS-- 331

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
                 K+EA K         VL T   +L+       D+ +D  + ++      +Q+   
Sbjct: 332  -----KIEAGKL--------VLDTIPFNLR-------DLIEDT-LTILAPAAHTKQL--E 368

Query: 492  LISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQ 551
            L+S   + TP   VG             + L+ K       ++A+K              
Sbjct: 369  LVSLVYRDTPLSLVG-------------DPLRLKQVLTNLISNAIK-------------- 401

Query: 552  NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTL 611
              F ++               GT        D++ E    +R  V DTGIG+ +  L  L
Sbjct: 402  --FTNE---------------GTIAVRAMVEDDNAE-RAQLRISVQDTGIGLTDQDLRAL 443

Query: 612  FRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIE 671
            F+ + Q     +R+ GGTGLGL I K+L+E MGG + V S    GS F   L      + 
Sbjct: 444  FQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGSEFWISLS-----LP 498

Query: 672  ENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAH 731
            +  DD +DL   A                Q R +  L       ++ +   +S+G     
Sbjct: 499  KARDDAEDLPHPA---------------LQGRRIALLEQHPLARQALQHQLHSLGL---- 539

Query: 732  KVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGK 791
            +V  F        + + +++++ L D  +V  V     EP++      E E     + G 
Sbjct: 540  EVQTFDTLDQMQSTISARRQSSELID-LAVLGVTNREIEPQALSRRLAEIE-----ALGC 593

Query: 792  QCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQ--------- 842
            +C V        P TE  S+ +A           E     ++Q KP    +         
Sbjct: 594  KCVVLC------PTTEQASYHDA---------LPEAHSYTQLQGKPACTRKLQRVLVELV 638

Query: 843  SPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
             P+ + AE     P    ++L V+DN  N+++ K+++  +G  +  V+NG  A+ AV+  
Sbjct: 639  RPNQAYAEPAAAAPSRAARVLCVDDNPANLLLVKTLLGDMGADVVAVDNGPAALEAVKQH 698

Query: 903  NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
            ++DL+LMDV MP MDG + T  IR       W        EQA  S+        +PI+A
Sbjct: 699  SFDLVLMDVQMPGMDGRQTTEAIR------QW--------EQASSSTP-------LPIVA 737

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            +TA+AL+        +G+D +++KP++ ++L + + ++
Sbjct: 738  LTAHALANEKRSLLQSGLDDYLTKPISDRQLAQVVLKW 775


>gi|383454339|ref|YP_005368328.1| sensory box histidine kinase/response regulator [Corallococcus
            coralloides DSM 2259]
 gi|380732170|gb|AFE08172.1| sensory box histidine kinase/response regulator [Corallococcus
            coralloides DSM 2259]
          Length = 909

 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 123/440 (27%), Positives = 200/440 (45%), Gaps = 71/440 (16%)

Query: 570  DDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGT 629
            D P  P++ G   +        +   V DTG+GI E A   LF+ + Q++   +R+YGGT
Sbjct: 385  DTPRQPLAPGGLFE--------LHFAVQDTGLGITEAARAGLFQPFNQLNESVSRRYGGT 436

Query: 630  GLGLAICKQLVELMGGRLTVTSK--VHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQD 687
            GLGLAI K+LVE MGGRL + S+     G+TF F    + +P       PD L     + 
Sbjct: 437  GLGLAISKRLVEAMGGRLWMESEGVPGKGATFHFTFQAREAPRGGEPLRPDALKLHGRRV 496

Query: 688  SVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNN 747
             V DD          + LG   ++ G +    ++    G  +  K+   +    +   + 
Sbjct: 497  LVVDDNA-----INRKLLGRQLAAWGMA----IVEVGSGAEALSKLESGARFDLAILDHR 547

Query: 748  RQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATE 807
                  PL D  ++A             +H  +  +  E+       +  TS+ Q  A  
Sbjct: 548  -----MPLMDGPTLA-------------AHIRQQRDARELP-----LLLLTSFDQRDAQP 584

Query: 808  STSHSEANREMIQTSKTNEPQKICEMQE----KPDRISQSPSSSSAEVPETKPKPKP--K 861
                +      ++ S  ++    C  Q+    +P  ++ +P++    V  T+P  +   +
Sbjct: 585  PGLFTAVLPRPVKASHLHDALMTCLAQDLISARPMPVTPAPATRERSVFNTRPGEQMPLR 644

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILLVEDN  N  +A  ++++LG+  D  NNG E +  +  + YD++LMDV MP +DGL+A
Sbjct: 645  ILLVEDNPTNQKLALLVLERLGYPADTANNGREGLSLISRKRYDVVLMDVQMPELDGLQA 704

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR +R                 Q MP S      ++  +IAMTANA++    EC   GMD
Sbjct: 705  TRQLR-----------------QDMPVS------EQPWVIAMTANAMTADRRECLDAGMD 741

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             F+SKP+  ++L   L + +
Sbjct: 742  DFLSKPIRVEELISALRRAW 761



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/198 (38%), Positives = 114/198 (57%), Gaps = 7/198 (3%)

Query: 355 TELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
           T+L +     E+  +AK + LAT+SHEIR+P+  ++ MA +L +T L  EQR     +  
Sbjct: 228 TDLQRARQSAEDANQAKSLFLATVSHEIRTPMNAIIGMAGLLMDTALTPEQRDFASTIRQ 287

Query: 414 SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIAD 472
           SGD +L L+ND+LD SK+E+G ++LE   F  R+ V+ VL   A  + +K L L   + D
Sbjct: 288 SGDALLGLLNDMLDFSKIEAGRVELEQQPFNLRQCVESVLDLLAMRASEKSLDLGYHVTD 347

Query: 473 DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSA 532
           + P+ V+GD  R+RQ+L NL+ NA+KFT  G V I +   P  P A  GL +   A Q  
Sbjct: 348 ETPVSVVGDGARLRQVLLNLVGNAVKFTERGGVSISVD-TPRQPLAPGGLFELHFAVQDT 406

Query: 533 ----TDAVKEEKHQPKSQ 546
               T+A +    QP +Q
Sbjct: 407 GLGITEAARAGLFQPFNQ 424


>gi|158333448|ref|YP_001514620.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158303689|gb|ABW25306.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 755

 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 129/424 (30%), Positives = 188/424 (44%), Gaps = 89/424 (20%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTG+GIP      LF+ + QV +   RK+GGTGLGL ICK+L ELMGGR+ V S+   
Sbjct: 394  VRDTGMGIPAERQNRLFKSFSQVDSSTTRKFGGTGLGLVICKRLSELMGGRIWVESEEGQ 453

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTS 715
            GS  TF    Q     E ++D   L+      ++ D           R L  L   N T+
Sbjct: 454  GS--TFAFTIQA----EETEDTTVLAQSLPAVTLKDK----------RVL--LVDDNDTN 495

Query: 716  R--------SKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAET 767
            +        S K+ P     AS ++  G  E +  F       +  P  D  ++A+  + 
Sbjct: 496  QRVLTLQTESWKMKPQVA--ASGYEALGLLEHAGPFDIAILDMQ-MPEMDGLTLAQ--KI 550

Query: 768  LSEPE---------SSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREM 818
             S P          +S   +P+  +   +          ++W   P  +S  +S   + +
Sbjct: 551  RSHPRGVNFPMVMLTSIGQAPDLAHHKGLF---------SAWLNKPIKQSQLYSALVKSL 601

Query: 819  IQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSM 878
              T    + QK   +Q   +   Q P                KILL EDN +N  +A  +
Sbjct: 602  --TGNEVKTQKSTTLQLDTEMADQHPL---------------KILLAEDNPVNQKLAVLI 644

Query: 879  MKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938
            + ++G+  DVV NG+E + A++ Q+YD+ILMDV MP MDGL AT  I             
Sbjct: 645  LAKMGYRPDVVGNGLEVLQALKRQSYDVILMDVNMPEMDGLTATTHI------------- 691

Query: 939  EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
                +  MP        +R  IIAMTANA+    E+C   GMD +V+KP+  Q+L   LE
Sbjct: 692  ---YQSIMPE-------ERPRIIAMTANAMQGDREKCLDVGMDDYVTKPINIQELVVALE 741

Query: 999  QYFP 1002
               P
Sbjct: 742  NSEP 745



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 93/149 (62%), Gaps = 4/149 (2%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+P+ GV+ M  +L +T+L  +Q++    +  SGD +L LINDILD SK+E
Sbjct: 239 FLAMMSHEIRTPMNGVIGMTGLLLDTELTPQQQEYTETIRKSGDSLLTLINDILDYSKIE 298

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G + LE   F  R  V+  L+  A+ +  K + L G +  DVP  ++GDV R+RQIL N
Sbjct: 299 AGKLDLEKQAFNVRVCVEDALELVASRVGPKEIELAGVVEPDVPQAILGDVTRLRQILVN 358

Query: 492 LISNAIKFTPEGKVGIKLYVVPEPPFAKE 520
           L+ NAIKFT  G+V +    V   PFA +
Sbjct: 359 LLGNAIKFTQSGEVVVN---VSAEPFAAD 384


>gi|218532769|ref|YP_002423585.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
           CM4]
 gi|218525072|gb|ACK85657.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
           CM4]
          Length = 700

 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 169/365 (46%), Gaps = 96/365 (26%)

Query: 317 SGETIGVNYM--GMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQML 374
           SG   G N++  G DVT +V    + A++ +E A  +A+   + K+           + L
Sbjct: 139 SGSVDGPNWLRAGQDVTARV----EAARVLDE-AKSRAEAANVAKS-----------RFL 182

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           AT+SHE+R+PL G++ MA++L +T+LD EQR  +    +SG  +L L++ ILD S++E+G
Sbjct: 183 ATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGLVDGILDFSRIEAG 242

Query: 435 VMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493
            + L A  F    +V+ V++  A   Q K L +  DIADD+    +GD  R+RQIL NL 
Sbjct: 243 RLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLA 302

Query: 494 SNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNG 553
            NAIKFT  G VG+ L        A+ G                                
Sbjct: 303 GNAIKFTQTGGVGVSL--------ARSG-------------------------------- 322

Query: 554 FHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFR 613
              ++ GEG      D  PG                             IPE  +P LF 
Sbjct: 323 ---EEQGEGLVLTVEDTGPG-----------------------------IPEERIPILFE 350

Query: 614 KYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEEN 673
           ++ Q   D +  + GTGLGLAI ++LVE M G +   S +  GSTF  +LP    P  E 
Sbjct: 351 EFEQ--GDDSASHEGTGLGLAITRRLVERMNGTIEARSTMGRGSTFRVMLPL---PAAEG 405

Query: 674 SDDPD 678
           +  P+
Sbjct: 406 AMSPE 410



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 22/156 (14%)

Query: 845 SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN- 903
           ++SS   P     P  ++LL EDN IN ++A   +++LG  +    +G+EA+ A + Q  
Sbjct: 560 TASSKTAPTKTVAPGRRVLLAEDNPINALLATKALERLGAQVIHARDGLEALAAAEGQGP 619

Query: 904 YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
           +DL L+D+ MP +DGL+  R IR+ E        AE G         S  H     ++A+
Sbjct: 620 FDLALIDIRMPGLDGLETARRIRARE--------AETG--------ASPLH-----LVAL 658

Query: 964 TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
           TAN   E  +   A G D F+ KP+  + L   L++
Sbjct: 659 TANTGREDVDAASAAGFDGFLPKPLNLRALPALLDR 694


>gi|298530006|ref|ZP_07017408.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298509380|gb|EFI33284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1562

 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 139/480 (28%), Positives = 227/480 (47%), Gaps = 79/480 (16%)

Query: 213  LSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLH---EEDILGKTDVEIFS 269
            L + L +  +FL  ++ ++P  +  +D   R+         L    +E +LGKTD ++  
Sbjct: 657  LQERLAQEKDFLQQIIDSSPNPIFAKDWHGRHTLANTRVAELFGTTKEAMLGKTDYDM-- 714

Query: 270  GAGVKESQDF---KREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGET--IGVN 324
             A  +E Q F    REV++ G                K   I  EP+    G+       
Sbjct: 715  TATQEEIQAFLQDDREVMQSG----------------KQKHIPQEPLTDSQGQVRWFQTT 758

Query: 325  YMGMDVTDQVRKREKMA-------KLREEIAVQKAKETELNKTIHITEETMRAKQ-MLAT 376
             + + ++   +KR+ M        ++  E  VQ A+E          E   RAK   LA 
Sbjct: 759  KVPLMLSHDPKKRQVMGIATDITHRIESEHQVQLAREE--------AEAANRAKSDFLAN 810

Query: 377  MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
            MSHEIR+P+  V+ ++++L  T LD  QR  L  + +S  ++L +INDILD SK+E+G +
Sbjct: 811  MSHEIRTPMNAVIGLSQLLLQTSLDDRQRDYLNKISNSSRMLLGIINDILDYSKIEAGKL 870

Query: 437  KLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
            +L+   FR  E++  +     ++ + K L +  +I+ DVP  + GD LR+ Q+ TNL+ N
Sbjct: 871  ELDMHTFRMDELLDQMKTLFGSTAEDKGLEIIFNISTDVPRILKGDSLRLGQVFTNLLGN 930

Query: 496  AIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFH 555
            A+KFT +G V + ++              KS+  +S    V+++  + +SQ      G  
Sbjct: 931  AVKFTEKGHVELAVH--------------KSEV-RSQESEVRDQGTEVRSQDLGQGTG-- 973

Query: 556  DKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEA-TVWIRCDVYDTGIGIPENALPTLFRK 614
                G+G +                + D D E+  V +  ++ DTGIG+ +  +  LF+ 
Sbjct: 974  --DRGQGLE----------------AADRDSESKIVRLLFEIKDTGIGMDDEQVQRLFQP 1015

Query: 615  YMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENS 674
            + Q      RKYGGTGLGL I  +LV+ MGG L V S    GS F F +   ++P  E +
Sbjct: 1016 FSQADTSTTRKYGGTGLGLVISHKLVQRMGGTLQVDSTPGQGSRFYFEIDLPMAPESETT 1075



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 26/140 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILL EDN +N  VA  M+++ G ++ +  NG EAV  V+  ++DL+LMD+ MPVMDG +A
Sbjct: 1234 ILLAEDNALNQEVAWQMLEKTGAALSLAANGAEAVEMVEAGSFDLVLMDLQMPVMDGFEA 1293

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR I                             F  +P+IA++A  + E   +    GM 
Sbjct: 1294 TRKI--------------------------LERFPDLPVIALSAAVMEEDRNKSRQAGMR 1327

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
              +SKP+    L   L ++ 
Sbjct: 1328 DHLSKPIESTSLYRTLARWL 1347


>gi|392379678|ref|YP_004986837.1| putative histidine kinase [Azospirillum brasilense Sp245]
 gi|356882045|emb|CCD03046.1| putative histidine kinase [Azospirillum brasilense Sp245]
          Length = 1217

 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 185/436 (42%), Gaps = 54/436 (12%)

Query: 580  NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
            + MD   +  V +R  V D+GIG+ E     LF+ + Q  +  +R++GGTGLGL IC +L
Sbjct: 668  SGMDGAADGGVTLRFAVTDSGIGLTEEQRAKLFQPFQQADSSTSRRFGGTGLGLTICHKL 727

Query: 640  VELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQ 699
              +MGG + V S    GSTF F LP+ V+    +   P   +  A        V  GF  
Sbjct: 728  CTMMGGGIGVDSVFGEGSTFWFELPFAVAAPIADCPQPRTPAAPAVAVDDARVVAVGFDG 787

Query: 700  FQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDAC 759
               + L  + ++ G +        + G  +               +   Q ETA    AC
Sbjct: 788  AGRQALEGILATAGIA-PLGWYDLTGGLEAVTGTQAGPGRLVVLVNGGVQSETAI---AC 843

Query: 760  SVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMI 819
              A V         +F+  P P     V                P   +++ SEA+R  +
Sbjct: 844  CRAIV------QSPAFAGGPVPAVILAV----------------PRALASTMSEADRIGL 881

Query: 820  QTSKTNEPQK----ICEMQEKPDRISQSPSSSSAEVPETKPKPKP---------KILLVE 866
              +  N P +       +     R S    S   E   T  +P P          IL+ E
Sbjct: 882  LCA-VNLPLRRRRVWLAIAAALGRASLERRSEPREHDATGWEPPPIESAIAAGALILVAE 940

Query: 867  DNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIR 926
            DN IN  V + M+ + G++I++ +NG  A+  +Q   Y L+L D  MP MDG   T  IR
Sbjct: 941  DNPINQTVIRRMLNKRGYAIEMADNGARALEMLQPGRYGLLLTDFHMPEMDGFGLTHAIR 1000

Query: 927  SFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSK 986
            +               E+ +  +  +    R+PI+A+TA+AL  + + C   GMD +++K
Sbjct: 1001 AR--------------ERELTEALGAGAVTRLPIVALTADALPGTQQRCLEAGMDGYLTK 1046

Query: 987  PVTFQKLKECLEQYFP 1002
            P+  + L E L+++ P
Sbjct: 1047 PIESRLLAETLDRFLP 1062



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 103/163 (63%), Gaps = 2/163 (1%)

Query: 353 KETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVM 411
           +ET L++  +  EE  RAK   LA MSHEIR+P+ GV +MAE+L  T L  EQ  +LGV+
Sbjct: 504 RETALHEAKNQAEEATRAKSSFLAVMSHEIRTPMNGVTAMAEMLDQTDLTEEQHGMLGVI 563

Query: 412 ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDI 470
            SS   +L +INDILD SK+E+G M++E+  F P EVV+   +  A  + +K L L  D+
Sbjct: 564 RSSAQALLIIINDILDFSKIEAGKMEIESVPFSPLEVVEESAELVAGRIEEKGLQLSVDV 623

Query: 471 ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
              VP  + GD  R+RQIL NL+ NA+KFT +G V + +   P
Sbjct: 624 GPGVPDRLTGDPTRVRQILINLMGNAVKFTEKGSVAVTVSAEP 666


>gi|38505595|ref|NP_942216.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
            6803]
 gi|451816603|ref|YP_007459806.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
            6803]
 gi|38423619|dbj|BAD01830.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
            6803]
 gi|451782521|gb|AGF53487.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
            6803]
          Length = 1209

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 198/447 (44%), Gaps = 95/447 (21%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV-- 649
            I+  + DTGIGI  +    LF+ + QV+   ARKYGGTGLGLAICK+L E+MGG++ V  
Sbjct: 662  IQFSIKDTGIGISPDQQSALFKSFSQVNTSIARKYGGTGLGLAICKRLTEMMGGQIWVES 721

Query: 650  --------------TSKVH----CGSTFTFILPYQVSPIEENSDDPD-DLSDMADQDSVT 690
                          TSK +     G+TF F +  Q + I    +D    LS    +  + 
Sbjct: 722  YGEIAGNPPVDWAKTSKNNPLESTGATFYFTITAQSTTIVRRPNDLSCQLSLAGKRLLIV 781

Query: 691  DDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQK 750
            DD              +  S  G     K L  + G  +    +G+   S+      RQ 
Sbjct: 782  DD--------------NQLSCEGL----KQLVTAWGLQAQATTSGWEAFSWL-----RQG 818

Query: 751  ETAPLE---------DACSVAEVAETLSEPESS--FSHSPEPENETEVSRGKQCHVETTS 799
            E   L          D   +AE   TL   ES      +P P +  E+S   +  +   +
Sbjct: 819  ECFDLAIIDLQMEEVDGLQLAEALRTLPTGESLPLVILTPSPTSLAELS--ARTDISIAA 876

Query: 800  WFQNPATESTSHSEANREMIQTSKTNEP-------QKICEMQEKPDRISQSPSSSSAEVP 852
               +P  +S  + E   E+ +  +T+           I E  ++    + SP    A + 
Sbjct: 877  CLSSPIKKSLVY-EVLCEVFKADETDNSLFNGDWRSGITEAVKR----TCSPQEREARIK 931

Query: 853  ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVC 912
               P    +ILLVEDN IN  VA  M+++LG+  D+  NG+EA+  +   +YD+ILMDV 
Sbjct: 932  TLSPL---RILLVEDNNINQRVALLMLEKLGYRPDIAGNGLEALQVLHQASYDVILMDVE 988

Query: 913  MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            MP MDGL AT+ IR                 Q  P+       ++  IIA+TA A+    
Sbjct: 989  MPEMDGLSATKAIR-----------------QDFPAD------EQPWIIAVTAYAMQGDR 1025

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQ 999
            E C A GM+ +++KP+    L + L++
Sbjct: 1026 ETCLAAGMNDYITKPIRENDLLDALQR 1052



 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 109/186 (58%), Gaps = 6/186 (3%)

Query: 330 VTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT----EETMRAKQ-MLATMSHEIRSP 384
           V DQV      AKL E+    + +  E NK +       E+  RAK   LATMSHEIR+P
Sbjct: 463 VADQVGIALAQAKLLEQEREIRQQLIEQNKALMTATKAAEDANRAKSDFLATMSHEIRTP 522

Query: 385 LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
           +  V+ M  +L +T L+ +Q+Q    + SSG+ +L LINDILD SK+ESG  KLE   F 
Sbjct: 523 MNAVIGMTGLLLDTHLNTQQQQFTETIRSSGEALLSLINDILDFSKIESGQFKLEIHPFE 582

Query: 445 PREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
            ++ V+  L   A  +  K L L   I   VP+ ++GD+ R+RQ+L N+++NA+KFT  G
Sbjct: 583 IQQCVEECLDLVAPQAFAKKLDLVYQIEPQVPMAILGDLTRVRQVLVNILANAVKFTTSG 642

Query: 504 KVGIKL 509
            + +++
Sbjct: 643 SIQVRV 648


>gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
           DM4]
 gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens DM4]
          Length = 703

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 167/365 (45%), Gaps = 96/365 (26%)

Query: 317 SGETIGVNYM--GMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQML 374
           SG   G N++  G DVT +V    + A++ +E A  +A+   + K+           + L
Sbjct: 142 SGSVDGPNWLRAGQDVTARV----EAARVLDE-AKSRAEAANVAKS-----------RFL 185

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           AT+SHE+R+PL G++ MA++L +T+LD EQR  +    +SG  +L L++ ILD S++E+G
Sbjct: 186 ATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGLVDGILDFSRIEAG 245

Query: 435 VMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493
            + L A  F    +V+ V++  A   Q K L +  DIADD+    +GD  R+RQIL NL 
Sbjct: 246 RLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLA 305

Query: 494 SNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNG 553
            NAIKFT  G VG+ L        A+ G                                
Sbjct: 306 GNAIKFTQAGGVGVSL--------ARSG-------------------------------- 325

Query: 554 FHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFR 613
              +  GEG      D  PG P                             E  +P LF 
Sbjct: 326 ---EGQGEGLVLTVEDTGPGIP-----------------------------EERIPILFE 353

Query: 614 KYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEEN 673
           ++ Q   D +  + GTGLGLAI ++LVE M G +   S V  GSTF  +LP    P  E 
Sbjct: 354 EFEQ--GDDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVVLPL---PAAEG 408

Query: 674 SDDPD 678
           +  P+
Sbjct: 409 AMSPE 413



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 46/193 (23%)

Query: 829 KICEMQEKPDRISQSPSSSSAEVPETKPKPKP---------------------KILLVED 867
           ++ E +  P R   SP+ ++A+   ++P P+                      ++LL ED
Sbjct: 529 RLLEPRPAPAR---SPADATAKTGTSQPGPRQPAPVKTTPGKTGSIQTAARGRRVLLAED 585

Query: 868 NKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-YDLILMDVCMPVMDGLKATRLIR 926
           N IN ++A   +++LG  +    +G+EA+ A + Q  +DL L+D+ MP +DGL+  R IR
Sbjct: 586 NPINALLATKALERLGAQVIHARDGLEALAAAEGQGPFDLALIDIRMPGLDGLETARRIR 645

Query: 927 SFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSK 986
           + E        AE G         S  H     ++A+TAN   E  +   A G D F+ K
Sbjct: 646 ARE--------AETG--------ASPLH-----LVALTANTGREDVDAASAAGFDGFLPK 684

Query: 987 PVTFQKLKECLEQ 999
           P+  + L   L++
Sbjct: 685 PLNLRALPALLDR 697


>gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 693

 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 167/365 (45%), Gaps = 96/365 (26%)

Query: 317 SGETIGVNYM--GMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQML 374
           SG   G N++  G DVT +V    + A++ +E A  +A+   + K+           + L
Sbjct: 132 SGSVDGPNWLRAGQDVTARV----EAARVLDE-AKSRAEAANVAKS-----------RFL 175

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           AT+SHE+R+PL G++ MA++L +T+LD EQR  +    +SG  +L L++ ILD S++E+G
Sbjct: 176 ATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGLVDGILDFSRIEAG 235

Query: 435 VMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493
            + L A  F    +V+ V++  A   Q K L +  DIADD+    +GD  R+RQIL NL 
Sbjct: 236 RLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLA 295

Query: 494 SNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNG 553
            NAIKFT  G VG+ L        A+ G                                
Sbjct: 296 GNAIKFTQAGGVGVSL--------ARSG-------------------------------- 315

Query: 554 FHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFR 613
              +  GEG      D  PG P                             E  +P LF 
Sbjct: 316 ---EGQGEGLVLTVEDTGPGIP-----------------------------EERIPILFE 343

Query: 614 KYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEEN 673
           ++ Q   D +  + GTGLGLAI ++LVE M G +   S V  GSTF  +LP    P  E 
Sbjct: 344 EFEQ--GDDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVVLPL---PAAEG 398

Query: 674 SDDPD 678
           +  P+
Sbjct: 399 AMSPE 403



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 46/193 (23%)

Query: 829 KICEMQEKPDRISQSPSSSSAEVPETKPKPKP---------------------KILLVED 867
           ++ E +  P R   SP+ ++A+   ++P P+                      ++LL ED
Sbjct: 519 RLLEPRPAPAR---SPADATAKTGTSQPGPRQPAPVKTTPGKTGSIQTAARGRRVLLAED 575

Query: 868 NKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-YDLILMDVCMPVMDGLKATRLIR 926
           N IN ++A   +++LG  +    +G+EA+ A + Q  +DL L+D+ MP +DGL+  R IR
Sbjct: 576 NPINALLATKALERLGAQVIHARDGLEALAAAEGQGPFDLALIDIRMPGLDGLETARRIR 635

Query: 927 SFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSK 986
           + E        AE G         S  H     ++A+TAN   E  +   A G D F+ K
Sbjct: 636 ARE--------AETG--------ASPLH-----LVALTANTGREDVDAASAAGFDGFLPK 674

Query: 987 PVTFQKLKECLEQ 999
           P+  + L   L++
Sbjct: 675 PLNLRALPALLDR 687


>gi|443475947|ref|ZP_21065876.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
 gi|443019143|gb|ELS33280.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
          Length = 1390

 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/317 (35%), Positives = 152/317 (47%), Gaps = 68/317 (21%)

Query: 346  EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
            +I  +K  E  L+      EE  RAK   LA+MSHEIR+P+ GV+ M EIL  T+L  EQ
Sbjct: 956  DITARKQTEIALSTAKSAAEEATRAKSAFLASMSHEIRTPMNGVIGMTEILEATQLTIEQ 1015

Query: 405  RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKI 463
            +  +  +  SG+ +L +INDILD SK+ESG+M +E  +F   EVV+ V +     +  K 
Sbjct: 1016 KDYVKTIKDSGESLLAIINDILDFSKIESGMMTIEENEFVIEEVVRDVCKLFKNQTTDKQ 1075

Query: 464  LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL--YVVPEPPFAKEG 521
            + L+  IA DVP  VIGD  R+RQ+L NL+ NAIKFT +G+V + +   ++ +P      
Sbjct: 1076 ISLQHTIALDVPKIVIGDRARLRQVLLNLVGNAIKFTHQGQVSLSISGRLLSKP------ 1129

Query: 522  LKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDK--KHGEGYQDHKHDDDPGTPVSHG 579
                                         Q G H +  KH   Y+      D G  ++  
Sbjct: 1130 -----------------------------QQGSHRELAKHELKYELLVAIADTGIGIAR- 1159

Query: 580  NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
            N +D   +          DT IG          RKY           GGTGLGLAI K L
Sbjct: 1160 NHLDSLFQP-----FTQADTSIG----------RKY-----------GGTGLGLAISKLL 1193

Query: 640  VELMGGRLTVTSKVHCG 656
            VELMGG + V S    G
Sbjct: 1194 VELMGGTIWVKSLDRIG 1210



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 26/132 (19%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVV-NNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
            +ILLVEDN +N  VA  M ++LG+ I+ + N+G++A+  +Q   +DL+LMD+ MP MDG+
Sbjct: 1265 RILLVEDNSVNQRVATLMFRRLGYQIEAIANDGLQAIQFLQNHEFDLVLMDIQMPEMDGI 1324

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
             AT+LIR                         ++   ++ I+AMTA+ + E  + CF  G
Sbjct: 1325 TATKLIR-------------------------TDLKSQVRIVAMTADVMPEDRQACFDAG 1359

Query: 980  MDSFVSKPVTFQ 991
            MD +VSKP+  Q
Sbjct: 1360 MDDYVSKPIDIQ 1371


>gi|260427268|ref|ZP_05781247.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
 gi|260421760|gb|EEX15011.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
          Length = 861

 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 190/419 (45%), Gaps = 60/419 (14%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  V DTG+G+P + +  +F ++ Q   D  R + GTGLGLAI K+LVE+M G + V S
Sbjct: 485  VRITVEDTGVGVPADKIEHIFGEFNQAEDDRNRPFEGTGLGLAITKRLVEMMEGEIWVKS 544

Query: 652  KVHCGSTFTFILPYQVS-PIEENSDD-PDDLSDMADQDSVTDD--VTAGFFQFQPRTLGS 707
            +   GS F   +P  V+ P EE     P+ L  +     V +D  + +     Q  TLG 
Sbjct: 545  EPGQGSCFGLRIPLAVAAPSEEGCATLPEGLETVL----VVEDHALNSAILARQLETLGL 600

Query: 708  LFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAET 767
            + ++  T+                 ++  +E      +     + + LE    +A +   
Sbjct: 601  VVATCKTAE--------------EALDRMAEPPDLVIAEQGLPDMSGLELTRQLALMQPG 646

Query: 768  LSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMI--QTSKTN 825
            L         +PEP       R         +  Q PA  S   +     +   Q+    
Sbjct: 647  LP----VILLTPEPAGLAVAGR----EAGARAVLQKPAQRSALLAALETALEPPQSGAGP 698

Query: 826  EPQK-ICEMQEKPDRISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLG 883
            E Q+ +   + +P     SP    AE P  +P P+P  +LL EDN+ N +V + M+++LG
Sbjct: 699  EVQRPVPAFRHRPV-TGASPRPHPAERPVARPAPRPLDVLLAEDNRTNQLVFRKMVQKLG 757

Query: 884  HSIDV--VNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAG 941
              + +   +NG+EAV A + Q  DLI MD+ MP MDG +ATR IR+ E  G         
Sbjct: 758  QPLRLRFADNGIEAVRAYREQRPDLIFMDISMPHMDGREATREIRALEAGG--------- 808

Query: 942  IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                           R+PIIA+TA+A++   E     G+D +++KP+   +L   L+++
Sbjct: 809  --------------PRVPIIAVTAHAMTGDREGVIEAGLDDYLTKPLRKAELAALLDKW 853



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 151/320 (47%), Gaps = 48/320 (15%)

Query: 200 VTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNH-----FPSL 254
           +T L +  S +EEL       D     ++ N P           YR IY        P  
Sbjct: 192 ITELMRMWSALEELPDGFVIYDAEDRMLMCNEP-----------YRAIYKASAPAIVPGA 240

Query: 255 HEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETE--LFGSKTFLIYVEP 312
             EDIL          A V   +D+    LE+ L A R  + E E  L   +   IY  P
Sbjct: 241 SFEDILRYGLERGQYAAAVGREEDW----LEERLSAHRHASHEMEQQLGDGRWLRIYERP 296

Query: 313 VFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ 372
           +  + G  +G+     DV D  R+ E+ A++R E A  +AK +                 
Sbjct: 297 L--RDGGRVGLRIDITDVKDTQRELEE-ARIRAETA-SRAKSS----------------- 335

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+P+ GVV MAE+L  + L  EQR  +  +  SG+ +L +INDILD SK+E
Sbjct: 336 FLANMSHEIRTPMNGVVGMAELLRESPLTDEQRLYVDTIRGSGEALLVIINDILDYSKIE 395

Query: 433 SGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           +  +KL A  F     V  V   LQ  A      ++ E D+   +P  V+GD  R+RQIL
Sbjct: 396 ADKLKLSAESFDLERAVHEVLLLLQPTAREKGLEMLAEYDMF--LPQRVVGDPGRVRQIL 453

Query: 490 TNLISNAIKFTPEGKVGIKL 509
           TNL+ NA+KFT EG V +++
Sbjct: 454 TNLVGNAVKFTNEGHVLVRV 473


>gi|254411490|ref|ZP_05025267.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196181991|gb|EDX76978.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1342

 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 183/421 (43%), Gaps = 80/421 (19%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTG+GI       LF+ + QV     R+YGGTGLGLAICKQLV+LMGG + V S+V  
Sbjct: 822  VSDTGVGISPEGQEKLFQSFSQVDNSTTRQYGGTGLGLAICKQLVDLMGGEIGVESQVGK 881

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTS 715
            GSTF F   +      E+   P  L+ +                     L  +  S  T 
Sbjct: 882  GSTFWFTAKFDTQTNAESPTTPFALTHL--------------------KLLVVSESRTTR 921

Query: 716  RSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPE--- 772
            +S + L N+ G        G  E + +  S +  ++ A L+    V      L + E   
Sbjct: 922  QSVRYLVNTWGI-------GIDEANSAELSLDALRQAASLDQPYDVVICDWQLPQIEDGS 974

Query: 773  --------SSFSHSPE----PENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQ 820
                    S+ SH+      P N+ +    +   V   S+   P         A+R    
Sbjct: 975  LIKTIRSDSALSHTKAVVMTPMNQRDQVE-QLLSVGAASYLLKPV-------RASRLFDS 1026

Query: 821  TSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMK 880
                  P+ I E QE  + ++Q   +++ + P  +P     ILL ED+ IN  V  + ++
Sbjct: 1027 LMAAVAPEMIKEQQE--EELAQH--TTTGDFPHKQPATPLNILLAEDHPINQQVILNQLQ 1082

Query: 881  QLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKAT-RLIRSFEDTGNWDAAAE 939
             LG+  D   NG   +  V+  +YD+ILMD  MPV+DG   T +LI  +           
Sbjct: 1083 MLGYEADCAPNGQVVLELVEQNSYDIILMDCQMPVLDGYATTTKLIERY----------- 1131

Query: 940  AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
                      GS++      IIA+TA+A  E  E C A GMD ++SKPV  + L E LE 
Sbjct: 1132 ----------GSTHPV----IIALTAHAFPEDRERCSAVGMDDYISKPVDEEMLSERLEY 1177

Query: 1000 Y 1000
            +
Sbjct: 1178 W 1178



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 151/299 (50%), Gaps = 32/299 (10%)

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPS---LHEEDILGKTDVEIFSGAGV 273
           L+R    L  V+ +AP+ M   D E+RY      + +   L  E I+G+   ++      
Sbjct: 534 LERERRQLQQVIASAPMAMAMFDNEMRYMAHSQKWLTVQGLEGESIIGRCHYDVIPDVPE 593

Query: 274 KESQDFKREVLEKGLPAKREITFETELFGSKTFLIY-VEPVFSKSGETIGVNYMGMDVTD 332
              Q  +R +  + +    +I   ++  GS  ++ + + P ++ +G+  G+    +  TD
Sbjct: 594 HWKQIHQRALTGQVITNPEDIWERSD--GSIVYMRWAINPWYTSNGQVGGI----VIATD 647

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
           Q+ +            + +A+E  L        E +R K + LA MSHEIR+P+ GV+ M
Sbjct: 648 QINE------------LVEAREAAL--------EAVRFKSKFLANMSHEIRTPMNGVLGM 687

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
             +L  T+L   QR     +  S D +L +INDILD SK+E+G M+LE  +F     ++ 
Sbjct: 688 VGLLLQTQLTSRQRDYAQTIRRSADHLLTIINDILDFSKLEAGEMELETIEFDLDGCIES 747

Query: 452 VLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           VL   A   + K L L   +   VP ++ GD  R+RQ+L NL +NAIKFTP+G+V I +
Sbjct: 748 VLDVLATQAEAKNLELATLVDRKVPRQLKGDPARLRQVLLNLANNAIKFTPQGEVVIHV 806


>gi|240141277|ref|YP_002965757.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
           AM1]
 gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
          Length = 698

 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 167/365 (45%), Gaps = 96/365 (26%)

Query: 317 SGETIGVNYM--GMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQML 374
           SG   G N++  G DVT +V    + A++ +E A  +A+   + K+           + L
Sbjct: 142 SGSVDGPNWLRAGQDVTARV----EAARVLDE-AKSRAEAANVAKS-----------RFL 185

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           AT+SHE+R+PL G++ MA++L +T+LD EQR  +    +SG  +L L++ ILD S++E+G
Sbjct: 186 ATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGLVDGILDFSRIEAG 245

Query: 435 VMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493
            + L A  F    +V+ V++  A   Q K L +  DIADD+    +GD  R+RQIL NL 
Sbjct: 246 RLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVRQILVNLA 305

Query: 494 SNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNG 553
            NAIKFT  G VG+ L        A+ G                                
Sbjct: 306 GNAIKFTQTGGVGVSL--------ARSG-------------------------------- 325

Query: 554 FHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFR 613
              +  GEG      D  PG P                             E  +P LF 
Sbjct: 326 ---EGQGEGLVLTVEDTGPGIP-----------------------------EERIPILFE 353

Query: 614 KYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEEN 673
           ++ Q   D +  + GTGLGLAI ++LVE M G +   S V  GSTF  +LP    P  E 
Sbjct: 354 EFEQ--GDDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVMLPL---PAAEG 408

Query: 674 SDDPD 678
           +  P+
Sbjct: 409 AMSPE 413



 Score = 82.8 bits (203), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 22/167 (13%)

Query: 834 QEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV 893
           Q  P + +   ++S    P     P  ++LL EDN IN ++A   +++LG  +    +G+
Sbjct: 547 QPGPAKTASGKTASGKTAPTKTAAPGRRVLLAEDNPINALLATKALERLGAQVIHARDGL 606

Query: 894 EAVHAVQCQN-YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
           EA+ A + Q  +DL L+D+ MP +DGL+  R IR+ E        AE G   A P     
Sbjct: 607 EALAAAEGQGPFDLALIDIRMPGLDGLETARRIRARE--------AETG---ATP----- 650

Query: 953 NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
                + ++A+TAN   E  +   A G D F+ KP+  + L   L++
Sbjct: 651 -----LHLVALTANTGREDVDAASAAGFDGFLPKPLNLRALPALLDR 692


>gi|167997627|ref|XP_001751520.1| ETR1 ethylene receptor [Physcomitrella patens subsp. patens]
 gi|162697501|gb|EDQ83837.1| ETR1 ethylene receptor [Physcomitrella patens subsp. patens]
 gi|163644192|dbj|BAF95746.1| ethylene receptor homolog [Physcomitrella patens]
          Length = 767

 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 153/291 (52%), Gaps = 37/291 (12%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA M++E+R+PL  V++++ +L  T L  EQR ++  ++ S +L+  LIND+L LS++E
Sbjct: 346 FLAEMNYEMRTPLHAVIALSSLLQETLLTPEQRSMVDTILKSSNLLATLINDVLGLSRLE 405

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTN 491
            G ++L+A  F    V + V++  A  +  K L  +  ++ D+P  V+GD  R+ QIL N
Sbjct: 406 DGRLELDARIFSLPNVFREVVKLVAPIISVKKLKSDLSVSKDLPEFVVGDEKRLMQILLN 465

Query: 492 LISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQ 551
           ++ NA+KFT +G V I++            L++    YQ    +++E    P SQ     
Sbjct: 466 VVGNAVKFTKDGSVAIRV-----------SLERDRTDYQREPRSLRE----PPSQ----- 505

Query: 552 NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTL 611
                   GE     +        +S G       E   +IR +V DTG+G+    +  L
Sbjct: 506 --------GEYIPQRESHSQRDLNLSSG-------EQCCYIRVEVVDTGVGLNPQDIANL 550

Query: 612 FRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK-VHCGSTFTF 661
           F K++Q  +  AR +  TGLGLAICK+ V LMGG + V S+ +  G+T  F
Sbjct: 551 FNKFIQADSSSARNHEETGLGLAICKRFVYLMGGDIWVDSEGLGKGTTVNF 601



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 27/165 (16%)

Query: 833 MQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNG 892
           + EKP    +  + S A V         K+L+ +DN +N MV + ++ +LG  + VV++G
Sbjct: 607 LPEKPSEQDKQIAPSPASVHLRTDFSGVKVLVTDDNGVNRMVTRGLLMRLGCEVTVVSSG 666

Query: 893 VEAVHAVQ--CQNYDLILMDVCMPVMDGLK-ATRLIRSFEDTGNWDAAAEAGIEQAMPSS 949
            E +  +    QN+ ++L+DVCMP MDG + A R+ + F                     
Sbjct: 667 SECLEVISQPGQNFQVLLLDVCMPEMDGYEVAIRIQQKF--------------------- 705

Query: 950 GSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLK 994
             + H +R  ++A+TAN   ++ E+C   GMD  + KP++ +K++
Sbjct: 706 --ARH-ERPSMVALTANTDKQTREKCLDLGMDGVIVKPISLEKMR 747


>gi|326797022|ref|YP_004314842.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
 gi|326547786|gb|ADZ93006.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
          Length = 911

 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/245 (36%), Positives = 141/245 (57%), Gaps = 22/245 (8%)

Query: 286 KGLPAKREITFETELFGSKTFLIY---VEPVFSKSGETIGVNYMGMDVTDQVRKREKMA- 341
           K + A++ I+ E  ++  +    Y   + P+F  SG    +  +  D+T +++  EK+A 
Sbjct: 85  KAIEARKPISLEQVIYIEEQQACYDTLLVPIFDASGNATFICGVSRDIT-KIKTAEKVAL 143

Query: 342 ----KLRE-EIAVQKAKETELNKTIHITEETMRAKQML-----------ATMSHEIRSPL 385
               KL+E    +++  ET   K    T     AKQ L           A MSHEIR+P+
Sbjct: 144 EASEKLKEYNTGLEQLNETLDRKVKERTAALENAKQELEQALDAKSAFVARMSHEIRTPI 203

Query: 386 TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445
             V+ ++ +   T+L+ EQ   L  +  SGD++L L+ND+LD SK+E+G++KLE+  F P
Sbjct: 204 NAVIGLSNLALKTQLNAEQNDYLTKIKDSGDVLLGLVNDVLDFSKIEAGMLKLESVPFHP 263

Query: 446 REVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK 504
            E+V+  +   + ++ +K L L  DIA DVP E+IGD LRI+QIL NL++NA+KFT EG 
Sbjct: 264 EELVRTTINMNSFSAYEKNLELITDIAKDVPTELIGDPLRIQQILINLVNNAVKFTSEGS 323

Query: 505 VGIKL 509
           + I+L
Sbjct: 324 ICIRL 328



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 58/88 (65%)

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
           S +E  E  V ++C+V DTGIGIPE  + TLF  + Q      RK+GGTGLGL I  QL 
Sbjct: 329 SSEEQEEGHVSLKCEVSDTGIGIPEEHMDTLFSSFAQADDSITRKFGGTGLGLTITSQLS 388

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           ELMGG +TV S++  G+TFT  LP ++S
Sbjct: 389 ELMGGSITVKSELGSGTTFTVHLPLKIS 416



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 34/174 (19%)

Query: 830 ICEMQEKP-------DRISQSPSSSSAEVPETKPKPK---PKILLVEDNKINVMVAKSMM 879
           I +  EKP       D I++  + +  E+PE    P      +LLVEDN IN  VA   +
Sbjct: 532 ISQFIEKPVSRSTVYDSIAKFLNINVDEIPEENEIPNFSGYSVLLVEDNPINQQVAIGYL 591

Query: 880 KQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939
                 ID   NG  A+  +Q ++YDL+LMD+ MPVMDGL A++ IR+            
Sbjct: 592 DHTNIGIDCAENGEIALKKIQSKSYDLVLMDIQMPVMDGLTASKHIRT------------ 639

Query: 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKL 993
                 MP        +++PI+AMTA++     ++    GM+  +SKP++ ++L
Sbjct: 640 ------MPEG------QQLPIVAMTAHSSDADKQKSLEAGMNGHLSKPISSEQL 681



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 10/113 (8%)

Query: 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ-----CQNYDLILMDV 911
           KPK +IL+V+D++I+  V K+++       D  ++G +A+ A++      Q YD+I MD 
Sbjct: 429 KPK-RILVVDDHEISRTVLKNILDGFDIQADTASDGFQAIEAIRDAYHSQQKYDVIFMDW 487

Query: 912 CMPVMDGLKATRLIR-SFEDTGN---WDAAAEAGIEQAMPSSGSSNHFKRIPI 960
            MP M+G++A++ IR  F+D        +A E    Q+  +SG  + F   P+
Sbjct: 488 YMPKMNGIEASQKIREEFKDFAPPILMISAYEKHYIQSHLTSGLISQFIEKPV 540


>gi|9758650|dbj|BAB09274.1| histidine kinase-like protein [Arabidopsis thaliana]
          Length = 1173

 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/293 (35%), Positives = 159/293 (54%), Gaps = 27/293 (9%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+ GV+ M ++L +T LD +Q         SG  +  LIN++LD +K+
Sbjct: 590 QFLATVSHEIRTPMNGVLGMLKMLMDTDLDAKQMDYAQTAHGSGKDLTSLINEVLDQAKI 649

Query: 432 ESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           ESG ++LE   F  R ++ +V  L +  A+ +K + L   ++  VP  V+GD  R RQI+
Sbjct: 650 ESGRLELENVPFDMRFILDNVSSLLSGKAN-EKGIELAVYVSSQVPDVVVGDPSRFRQII 708

Query: 490 TNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAV-KEEKHQPKSQTA 548
           TNL+ N+IK    G + I +++  E    KE L        +  DAV K+      S++ 
Sbjct: 709 TNLVGNSIK--ERGHIFISVHLADE---VKEPL--------TIEDAVLKQRLALGCSESG 755

Query: 549 SDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608
              +GF        +++ K      T  S  +   + ++  V     V DTG+GIP +A 
Sbjct: 756 ETVSGFPAVNAWGSWKNFK------TCYSTESQNSDQIKLLV----TVEDTGVGIPVDAQ 805

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
             +F  +MQ  +  +R YGGTG+GL+I K+LVELM G +   S+   GSTF+F
Sbjct: 806 GRIFTPFMQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPGIGSTFSF 858



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
            +IL+V+DN +N  VA+  +K+ G  +  V +G  A+  ++   N+D   MD+ MP MDG 
Sbjct: 1033 QILVVDDNLVNRRVAEGALKKYGAIVTCVESGKAALAMLKPPHNFDACFMDLQMPEMDGF 1092

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +ATR +R  E   N    A   +   M    SS H   +PI+AMTA+ +  + EEC   G
Sbjct: 1093 EATRRVRELEREIN-KKIASGEVSAEMFCKFSSWH---VPILAMTADVIQATHEECMKCG 1148

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKP   + L   + ++F
Sbjct: 1149 MDGYVSKPFEEEVLYTAVARFF 1170


>gi|94266984|ref|ZP_01290632.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
 gi|93452318|gb|EAT02952.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
          Length = 875

 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 181/383 (47%), Gaps = 70/383 (18%)

Query: 302 GSKTFLIYVEPVFSKSGETIGVNYMGMDVT------DQVRKREKMAKLREEIAVQKAKET 355
           GS+ ++ +      + GE  G+  +G D+T      DQ+R+ ++     EE+   +  E 
Sbjct: 390 GSRVWVSWTNRAIYEDGELTGLLCIGNDITRLKEAEDQLRRHQQEL---EEMVNARTDEL 446

Query: 356 ELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLD---REQRQLLGVMI 412
            L     +   +    + L+ MSHEIR+PL  ++      SN  L+   +  RQ L ++ 
Sbjct: 447 -LTANAELNRVSAYKSRFLSAMSHEIRTPLQTIIG----FSNLALEGGSQPPRQYLEMIK 501

Query: 413 SSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIA 471
           ++GD +L+LIN ILDL+K+ESG ++L    F+P E +   L+  A A+ Q+ L  +  I 
Sbjct: 502 TAGDTLLELINGILDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSID 561

Query: 472 DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQS 531
             VP EV+GD  R+ Q+L NL+ NA+KFT EG++     VV   P A +  ++ +     
Sbjct: 562 PAVPGEVVGDPARLTQVLVNLVGNALKFTEEGEI-----VVSVRPAADDADRRPT----- 611

Query: 532 ATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVW 591
              A + E   P +  A+  +G                                      
Sbjct: 612 -VGAGRAEVAPPAASDAT--SGL------------------------------------- 631

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +   V D+G GI       +F ++ Q   + A  +GG GLGLAI   LVELMGG + + S
Sbjct: 632 LHFTVRDSGSGIAAEQQGRIFTRFAQ--GEGASPHGGHGLGLAIAASLVELMGGEIWLES 689

Query: 652 KVHCGSTFTFILPYQVSPIEENS 674
           +   GS+F F + Y++ P  E +
Sbjct: 690 RPGEGSSFHFTIAYRLPPPRERA 712



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 66/132 (50%), Gaps = 22/132 (16%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           IL+ EDN  N ++   +++  GH +   +NG EAV   +     LILMD+ MP +DGL+A
Sbjct: 756 ILVAEDNDFNRLLLTDLLQNHGHRVLAASNGREAVEIYRSGQCQLILMDMMMPELDGLEA 815

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
           TR IR  E        AE G               RIPI+ +TA    E  E+C A GMD
Sbjct: 816 TRAIRRLE--------AEGG--------------SRIPIVGVTAGTQPEELEKCLAAGMD 853

Query: 982 SFVSKPVTFQKL 993
              +KPV  + L
Sbjct: 854 CCFTKPVDIKSL 865


>gi|254413229|ref|ZP_05027000.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196179849|gb|EDX74842.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1366

 Score =  139 bits (351), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 134/454 (29%), Positives = 205/454 (45%), Gaps = 68/454 (14%)

Query: 227  VLQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVEIFSGAGVKESQDFK--- 280
            +++N+P ++   D +LR+ ++            +  +GKT+ E+  G    ++Q +    
Sbjct: 731  LVENSPDIVARFDHQLRHLYVNPAIEQVAKCSAQTFIGKTNEEL--GMPPDKAQFWDEAL 788

Query: 281  REVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKM 340
            R V   G     E  F T   G K F   + P  +  G    V  +  D+T         
Sbjct: 789  RSVFTTGQEQLIEFDFPTSK-GMKFFHSRIVPELNADGTIRSVLSVTRDIT--------- 838

Query: 341  AKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSN-T 398
            A    E+A+Q+AK+          E   RAK + LATMSHE+R+PL G++   ++L N T
Sbjct: 839  AHKEIEVALQQAKDA--------AEVANRAKSEFLATMSHELRTPLNGILGYTKLLQNDT 890

Query: 399  KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
             L   QR+ L ++   G+ +L LINDILD SK+ES  ++L+ ++F         L T  +
Sbjct: 891  NLTETQRESLNIIYHCGEHLLTLINDILDFSKIESQKLELDPSEFH--------LPTFLS 942

Query: 459  SLQKILMLEG---------DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            S+  +  L            +   +P  VI D  R+RQ+L NL+SNA+KFT +G V  K+
Sbjct: 943  SISSLFRLRATQKEIDFTYKLLSPLPQNVIADEKRLRQVLINLLSNAVKFTDQGSVTFKV 1002

Query: 510  YVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHD 569
              V E      G      +   A+  V        +Q  ++       K        + D
Sbjct: 1003 GYV-EDVETCHGASCHGASCHGASQCVGASLTDNVTQETANVTKPARLK--------ERD 1053

Query: 570  DDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGT 629
                +P++              IR  V DTGIGI    L  +F  + QVS D      GT
Sbjct: 1054 ILSQSPITK-------------IRFQVEDTGIGIDPQQLSEIFLPFHQVS-DRTHAVEGT 1099

Query: 630  GLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
            GLGLAI ++LV+LM   + V+S +  GS F F L
Sbjct: 1100 GLGLAISQKLVQLMDSTIQVSSILGQGSVFWFDL 1133



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 36/142 (25%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY------DLILMDVCMPV 915
            +L+V+DN IN    +S +++L    ++  N VEAV    C         DLILMD+ MP 
Sbjct: 1162 LLIVDDNAIN----RSFLRELLQPFNL--NIVEAVDGQDCLQKAVEIQPDLILMDLIMPG 1215

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            +DGL ATR +R                   +P         +  IIA++AN    + +E 
Sbjct: 1216 LDGLTATRRLRQ------------------LP------QLAKTVIIAISANVFEMTQQES 1251

Query: 976  FANGMDSFVSKPVTFQKLKECL 997
               G   F+SKPV  Q+L E L
Sbjct: 1252 LTAGCQDFLSKPVPIQQLLELL 1273


>gi|321253934|ref|XP_003192904.1| protein-histidine kinase [Cryptococcus gattii WM276]
 gi|317459373|gb|ADV21117.1| protein-histidine kinase, putative [Cryptococcus gattii WM276]
          Length = 1390

 Score =  139 bits (351), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 167/369 (45%), Gaps = 96/369 (26%)

Query: 320  TIGVNYMGMDVTDQVRKREKMAKLREE------IAVQKAKE-----TELNKTIHITEETM 368
            T  VN M  ++T QVR   +++    +      I V+ + E     T++N+ ++   E++
Sbjct: 761  TSNVNTMASNLTSQVRAFAQISAAATDGDFTRFITVEASGEMDSLKTKINQMVYNLRESI 820

Query: 369  ----RAKQ-----------MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
                +A+Q            LA MSHEIR+P+ G++ M  +   ++L R+QR+ L ++ S
Sbjct: 821  EKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTLESELTRQQRENLMIVSS 880

Query: 414  SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIAD 472
                +L +I+DILD+SK+E+G M +E   F  R  V  VL+T    + Q  L L  D+  
Sbjct: 881  LAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSVLKTLCVKAAQNKLDLIFDVDP 940

Query: 473  DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSA 532
             +P ++IGD LR+RQ++TNLI NA+KFT +G+V +   V               K Y + 
Sbjct: 941  TMPDQLIGDPLRLRQVITNLIGNAVKFTTKGQVALSCRV---------------KRYVTV 985

Query: 533  TDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWI 592
             DAV+ E              F     G G +  K D                       
Sbjct: 986  ADAVELE--------------FCVADTGIGIKQDKLD----------------------- 1008

Query: 593  RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
                              +F  + Q      RKYGGTGLGL I K+LV LM G L V S+
Sbjct: 1009 -----------------VIFDTFAQADGSTTRKYGGTGLGLTISKRLVNLMSGDLWVESE 1051

Query: 653  VHCGSTFTF 661
               GS F F
Sbjct: 1052 YGQGSRFYF 1060



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 26/132 (19%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-----YDLILMDVCMPVM 916
            +LL EDN +N  +A  +M+  GH I+V +NG  A+   + +      +D+ILMDV MPVM
Sbjct: 1244 VLLAEDNLVNQKLAVKLMEVAGHKIEVADNGEIALEKYKRRQLARTPFDVILMDVSMPVM 1303

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
             G++AT LIR FE        A  G+              R PIIA+TA+A+    E C 
Sbjct: 1304 GGMEATGLIREFE--------ANEGV-------------PRTPIIALTAHAMIGDKERCL 1342

Query: 977  ANGMDSFVSKPV 988
            A GMD +V+KP+
Sbjct: 1343 AAGMDEYVTKPL 1354


>gi|428217642|ref|YP_007102107.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
 gi|427989424|gb|AFY69679.1| multi-sensor hybrid histidine kinase [Pseudanabaena sp. PCC 7367]
          Length = 1017

 Score =  139 bits (351), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 111/338 (32%), Positives = 169/338 (50%), Gaps = 35/338 (10%)

Query: 331 TDQVRKREKMAKLREEIAVQKAKET-ELNKTIHITEETMRAK-QMLATMSHEIRSPLTGV 388
           T  V +  ++ +   E+  + A+ T E  +     E    AK + LA MSHE+R+PL G+
Sbjct: 459 TQVVTQHNQLKQTNIELESRVARRTNEYRQASEAAESANLAKSEFLANMSHELRTPLNGI 518

Query: 389 VSMAEIL--SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446
           +   +IL  S T  D+EQ  +  V+   G+ +L LIND+LDLSK+E+  M+L    F  R
Sbjct: 519 LGYTQILQRSQTMTDKEQHGI-NVIHHCGNHLLTLINDVLDLSKIEARRMELFPKHFNFR 577

Query: 447 EVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
             ++ V++ +     QK + L    A D+PI V+ D  R+RQ+L NL+ NAIKFT +G V
Sbjct: 578 SFLQGVVEISMVRAEQKGIKLVYAPAPDLPIAVVADEKRLRQVLLNLLGNAIKFTDQGTV 637

Query: 506 GIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQD 565
            + +  V   P  K+G                   H P +Q     N   D    E Y+ 
Sbjct: 638 TLTVRRV--EPDHKKG-------------------HPPANQQQQVDNLSSDPPPIESYKG 676

Query: 566 HKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARK 625
           + ++ DP          + D      +R  + DTG+G+    L T+F  + QV  +  RK
Sbjct: 677 NSNNTDPLPD-------NGDRPIVSQLRFQIEDTGVGMGTEQLETIFLPFEQV-GESTRK 728

Query: 626 YGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
             GTGLGL+I  ++VE+MG  + V S++  GS F F L
Sbjct: 729 AEGTGLGLSISLKIVEMMGSTIQVASQIGKGSQFWFDL 766



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 24/143 (16%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            K KI++V+D   N  V  SM+  +G  +    NG +A+        DLI+ D+ MPVMDG
Sbjct: 793  KLKIMVVDDKWENRSVVTSMLAPIGFEMLEAENGEQALAIALANKPDLIITDLMMPVMDG 852

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
             +    +R                         S     I +I  +A+      ++    
Sbjct: 853  FQLLSAVR------------------------QSEQLSSIQVIVSSASVFDADQQKSLDA 888

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            G D F+ KPV   +L + L+ + 
Sbjct: 889  GADDFIPKPVQSTELLQQLQSHL 911


>gi|88707340|gb|ABD49452.1| two-component-like hybrid sensor histidine kinase 1 [Cryptococcus
            neoformans var. grubii]
          Length = 1383

 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 167/369 (45%), Gaps = 96/369 (26%)

Query: 320  TIGVNYMGMDVTDQVRKREKMAKLREE------IAVQKAKE-----TELNKTIHITEETM 368
            T  VN M  ++T QVR   +++    +      I V+ + E     T++N+ ++   E++
Sbjct: 754  TSNVNTMASNLTSQVRAFAQISAAATDGDFTRFITVEASGEMDSLKTKINQMVYNLRESI 813

Query: 369  ----RAKQ-----------MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
                +A+Q            LA MSHEIR+P+ G++ M  +   ++L R+QR+ L ++ S
Sbjct: 814  EKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTLESELTRQQRENLMIVSS 873

Query: 414  SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIAD 472
                +L +I+DILD+SK+E+G M +E   F  R  V  VL+T    + Q  L L  D+  
Sbjct: 874  LAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSVLKTLCVKAAQNKLDLIFDVDP 933

Query: 473  DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSA 532
             +P ++IGD LR+RQ++TNLI NA+KFT +G+V +   V               K Y + 
Sbjct: 934  TMPDQLIGDPLRLRQVITNLIGNAVKFTTKGQVALSCRV---------------KRYVAV 978

Query: 533  TDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWI 592
             DAV+ E              F     G G +  K D                       
Sbjct: 979  ADAVELE--------------FCVADTGIGIKQDKLD----------------------- 1001

Query: 593  RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
                              +F  + Q      RKYGGTGLGL I K+LV LM G L V S+
Sbjct: 1002 -----------------VIFDTFAQADGSTTRKYGGTGLGLTISKRLVNLMSGDLWVESE 1044

Query: 653  VHCGSTFTF 661
               GS F F
Sbjct: 1045 YGQGSRFYF 1053



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 26/132 (19%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-----YDLILMDVCMPVM 916
            +LL EDN +N  +A  +M+  GH I+V +NG  A+   + +      +D+ILMDV MPVM
Sbjct: 1237 VLLAEDNLVNQKLAVKLMEVAGHKIEVADNGEIALEKYKRRQLARTPFDVILMDVSMPVM 1296

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
             G++AT LIR FE        A  G+              R PIIA+TA+A+    E C 
Sbjct: 1297 GGMEATGLIREFE--------ANEGV-------------PRTPIIALTAHAMIGDKERCL 1335

Query: 977  ANGMDSFVSKPV 988
            A GMD +V+KP+
Sbjct: 1336 AAGMDEYVTKPL 1347


>gi|58265008|ref|XP_569660.1| protein-histidine kinase [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|57225892|gb|AAW42353.1| protein-histidine kinase, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1390

 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 167/369 (45%), Gaps = 96/369 (26%)

Query: 320  TIGVNYMGMDVTDQVRKREKMAKLREE------IAVQKAKE-----TELNKTIHITEETM 368
            T  VN M  ++T QVR   +++    +      I V+ + E     T++N+ ++   E++
Sbjct: 761  TSNVNTMASNLTSQVRAFAQISAAATDGDFTRFITVEASGEMDSLKTKINQMVYNLRESI 820

Query: 369  ----RAKQ-----------MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
                +A+Q            LA MSHEIR+P+ G++ M  +   ++L R+QR+ L ++ S
Sbjct: 821  EKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTLESELTRQQRENLMIVSS 880

Query: 414  SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIAD 472
                +L +I+DILD+SK+E+G M +E   F  R  V  VL+T    + Q  L L  D+  
Sbjct: 881  LAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSVLKTLCVKAAQNKLDLIFDVDP 940

Query: 473  DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSA 532
             +P ++IGD LR+RQ++TNLI NA+KFT +G+V +   V               K Y + 
Sbjct: 941  TMPDQLIGDPLRLRQVITNLIGNAVKFTTKGQVALSCRV---------------KRYVTV 985

Query: 533  TDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWI 592
             DAV+ E              F     G G +  K D                       
Sbjct: 986  ADAVELE--------------FCVADTGIGIKQDKLD----------------------- 1008

Query: 593  RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
                              +F  + Q      RKYGGTGLGL I K+LV LM G L V S+
Sbjct: 1009 -----------------VIFDTFAQADGSTTRKYGGTGLGLTISKRLVNLMSGDLWVESE 1051

Query: 653  VHCGSTFTF 661
               GS F F
Sbjct: 1052 YGQGSRFYF 1060



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 26/132 (19%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-----YDLILMDVCMPVM 916
            +LL EDN +N  +A  +M+  GH I+V +NG  A+   + +      +D+ILMDV MPVM
Sbjct: 1244 VLLAEDNLVNQKLAVKLMEVAGHKIEVADNGEIALEKYKRRQLARTPFDVILMDVSMPVM 1303

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
             G++AT LIR FE        A  G+              R PIIA+TA+A+    E C 
Sbjct: 1304 GGMEATGLIREFE--------ANEGV-------------PRTPIIALTAHAMIGDKERCL 1342

Query: 977  ANGMDSFVSKPV 988
            A GMD +V+KP+
Sbjct: 1343 AAGMDEYVTKPL 1354


>gi|125987876|dbj|BAF47077.1| CnNIK1 [Cryptococcus neoformans var. neoformans]
          Length = 1383

 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 167/369 (45%), Gaps = 96/369 (26%)

Query: 320  TIGVNYMGMDVTDQVRKREKMAKLREE------IAVQKAKE-----TELNKTIHITEETM 368
            T  VN M  ++T QVR   +++    +      I V+ + E     T++N+ ++   E++
Sbjct: 754  TSNVNTMASNLTSQVRAFAQISAAATDGDFTRFITVEASGEMDSLKTKINQMVYNLRESI 813

Query: 369  ----RAKQ-----------MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
                +A+Q            LA MSHEIR+P+ G++ M  +   ++L R+QR+ L ++ S
Sbjct: 814  EKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTLESELTRQQRENLMIVSS 873

Query: 414  SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIAD 472
                +L +I+DILD+SK+E+G M +E   F  R  V  VL+T    + Q  L L  D+  
Sbjct: 874  LAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSVLKTLCVKAAQNKLDLIFDVDP 933

Query: 473  DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSA 532
             +P ++IGD LR+RQ++TNLI NA+KFT +G+V +   V               K Y + 
Sbjct: 934  TMPDQLIGDPLRLRQVITNLIGNAVKFTTKGQVALSCRV---------------KRYVTV 978

Query: 533  TDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWI 592
             DAV+ E              F     G G +  K D                       
Sbjct: 979  ADAVELE--------------FCVADTGIGIKQDKLD----------------------- 1001

Query: 593  RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
                              +F  + Q      RKYGGTGLGL I K+LV LM G L V S+
Sbjct: 1002 -----------------VIFDTFAQADGSTTRKYGGTGLGLTISKRLVNLMSGDLWVESE 1044

Query: 653  VHCGSTFTF 661
               GS F F
Sbjct: 1045 YGQGSRFYF 1053



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 26/132 (19%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-----YDLILMDVCMPVM 916
            +LL EDN +N  +A  +M+  GH I+V +NG  A+   + +      +D+ILMDV MPVM
Sbjct: 1237 VLLAEDNLVNQKLAVKLMEVAGHKIEVADNGEIALEKYKRRQLARTPFDVILMDVSMPVM 1296

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
             G++AT LIR FE        A  G+              R PIIA+TA+A+    E C 
Sbjct: 1297 GGMEATGLIREFE--------ANEGV-------------PRTPIIALTAHAMIGDKERCL 1335

Query: 977  ANGMDSFVSKPV 988
            A GMD +V+KP+
Sbjct: 1336 AAGMDEYVTKPL 1347


>gi|134109563|ref|XP_776896.1| hypothetical protein CNBC3870 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50259576|gb|EAL22249.1| hypothetical protein CNBC3870 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1390

 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 167/369 (45%), Gaps = 96/369 (26%)

Query: 320  TIGVNYMGMDVTDQVRKREKMAKLREE------IAVQKAKE-----TELNKTIHITEETM 368
            T  VN M  ++T QVR   +++    +      I V+ + E     T++N+ ++   E++
Sbjct: 761  TSNVNTMASNLTSQVRAFAQISAAATDGDFTRFITVEASGEMDSLKTKINQMVYNLRESI 820

Query: 369  ----RAKQ-----------MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
                +A+Q            LA MSHEIR+P+ G++ M  +   ++L R+QR+ L ++ S
Sbjct: 821  EKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTLESELTRQQRENLMIVSS 880

Query: 414  SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIAD 472
                +L +I+DILD+SK+E+G M +E   F  R  V  VL+T    + Q  L L  D+  
Sbjct: 881  LAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSVLKTLCVKAAQNKLDLIFDVDP 940

Query: 473  DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSA 532
             +P ++IGD LR+RQ++TNLI NA+KFT +G+V +   V               K Y + 
Sbjct: 941  TMPDQLIGDPLRLRQVITNLIGNAVKFTTKGQVALSCRV---------------KRYVTV 985

Query: 533  TDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWI 592
             DAV+ E              F     G G +  K D                       
Sbjct: 986  ADAVELE--------------FCVADTGIGIKQDKLD----------------------- 1008

Query: 593  RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
                              +F  + Q      RKYGGTGLGL I K+LV LM G L V S+
Sbjct: 1009 -----------------VIFDTFAQADGSTTRKYGGTGLGLTISKRLVNLMSGDLWVESE 1051

Query: 653  VHCGSTFTF 661
               GS F F
Sbjct: 1052 YGQGSRFYF 1060



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 26/132 (19%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-----YDLILMDVCMPVM 916
            +LL EDN +N  +A  +M+  GH I+V +NG  A+   + +      +D+ILMDV MPVM
Sbjct: 1244 VLLAEDNLVNQKLAVKLMEVAGHKIEVADNGEIALEKYKRRQLARTPFDVILMDVSMPVM 1303

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
             G++AT LIR FE        A  G+              R PIIA+TA+A+    E C 
Sbjct: 1304 GGMEATGLIREFE--------ANEGV-------------PRTPIIALTAHAMIGDKERCL 1342

Query: 977  ANGMDSFVSKPV 988
            A GMD +V+KP+
Sbjct: 1343 AAGMDEYVTKPL 1354


>gi|409422800|ref|ZP_11259880.1| sensor histidine kinase/response regulator [Pseudomonas sp. HYS]
          Length = 942

 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/335 (31%), Positives = 164/335 (48%), Gaps = 79/335 (23%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L +     +    AK + LATMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 435 DISARKQVEAALEEARQSADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTRLDAQQ 494

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
           R  L  +  S   +LQLI D+LD+SK+E+G + LE ++F P E+V  V+Q  +AA+L K 
Sbjct: 495 RDYLHAIEGSSATLLQLICDVLDVSKIEAGQLALELSEFSPLELVHEVIQGYSAAALGKD 554

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLK 523
           L L       +P  +IGDV RIRQIL NL+SNA+KFT  G+V +++ ++      ++G +
Sbjct: 555 LQLYACFDPQLPERLIGDVTRIRQILNNLLSNAVKFTDSGRVVLRVKLI-----NRDG-E 608

Query: 524 QKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMD 583
           + S  +Q +                       D   G   +DH +  +P    + GN+  
Sbjct: 609 RSSLMWQVS-----------------------DTGKGIAEEDHAYIFEPFYQ-TEGNTN- 643

Query: 584 EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
                       V  TG+G+P                              IC++L +LM
Sbjct: 644 -----------VVAGTGLGLP------------------------------ICQRLTQLM 662

Query: 644 GGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPD 678
            G+L + S++  GS+FT  L     P+EE S   D
Sbjct: 663 NGQLRMVSELGLGSSFTLTL-----PLEEASASTD 692



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 26/139 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            IL+ EDN IN ++ +  +++LG ++++  +G EA+   +  ++D++L DV MP ++G + 
Sbjct: 822  ILVAEDNIINQLILRDQLEELGCTVELAGDGNEALQLWKNGHFDVVLTDVNMPKLNGYEL 881

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
             R +R                       G S     IPII  TANA+   AE C A GM+
Sbjct: 882  ARELR---------------------RQGCS-----IPIIGATANAMRGEAELCLAAGMN 915

Query: 982  SFVSKPVTFQKLKECLEQY 1000
              + KP   + L   L  Y
Sbjct: 916  HCLVKPFALRALFNYLAPY 934


>gi|405123280|gb|AFR98045.1| protein-histidine kinase [Cryptococcus neoformans var. grubii H99]
          Length = 1385

 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 112/369 (30%), Positives = 167/369 (45%), Gaps = 96/369 (26%)

Query: 320  TIGVNYMGMDVTDQVRKREKMAKLREE------IAVQKAKE-----TELNKTIHITEETM 368
            T  VN M  ++T QVR   +++    +      I V+ + E     T++N+ ++   E++
Sbjct: 756  TSNVNTMASNLTSQVRAFAQISAAATDGDFTRFITVEASGEMDSLKTKINQMVYNLRESI 815

Query: 369  ----RAKQ-----------MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
                +A+Q            LA MSHEIR+P+ G++ M  +   ++L R+QR+ L ++ S
Sbjct: 816  EKNTKARQEAEMANRSKSEFLANMSHEIRTPMNGIIGMTVLTLESELTRQQRENLMIVSS 875

Query: 414  SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIAD 472
                +L +I+DILD+SK+E+G M +E   F  R  V  VL+T    + Q  L L  D+  
Sbjct: 876  LAGSLLTIIDDILDISKIEAGRMTMEQIPFSLRVAVFSVLKTLCVKAAQNKLDLIFDVDP 935

Query: 473  DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSA 532
             +P ++IGD LR+RQ++TNLI NA+KFT +G+V +   V               K Y + 
Sbjct: 936  TMPDQLIGDPLRLRQVITNLIGNAVKFTTKGQVALSCRV---------------KRYVAV 980

Query: 533  TDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWI 592
             DAV+ E              F     G G +  K D                       
Sbjct: 981  ADAVELE--------------FCVADTGIGIKQDKLD----------------------- 1003

Query: 593  RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
                              +F  + Q      RKYGGTGLGL I K+LV LM G L V S+
Sbjct: 1004 -----------------VIFDTFAQADGSTTRKYGGTGLGLTISKRLVNLMSGDLWVESE 1046

Query: 653  VHCGSTFTF 661
               GS F F
Sbjct: 1047 YGQGSRFYF 1055



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 26/132 (19%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-----YDLILMDVCMPVM 916
            +LL EDN +N  +A  +M+  GH I+V +NG  A+   + +      +D+ILMDV MPVM
Sbjct: 1239 VLLAEDNLVNQKLAVKLMEVAGHKIEVADNGEIALEKYKRRQLARTPFDVILMDVSMPVM 1298

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
             G++AT LIR FE        A  G+              R PIIA+TA+A+    E C 
Sbjct: 1299 GGMEATGLIREFE--------ANEGV-------------PRTPIIALTAHAMIGDKERCL 1337

Query: 977  ANGMDSFVSKPV 988
            A GMD +V+KP+
Sbjct: 1338 AAGMDEYVTKPL 1349


>gi|168061794|ref|XP_001782871.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162665649|gb|EDQ52326.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 488

 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 159/320 (49%), Gaps = 33/320 (10%)

Query: 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
           MSHE+R+P+TGV+ M ++L  T L  EQ   + VM  S + ++Q++N+ILD S+++SG +
Sbjct: 2   MSHELRTPMTGVLGMLDLLLLTSLTPEQGGYVKVMQVSAESLMQVLNEILDFSRIQSGHI 61

Query: 437 KLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
            L+   F   E++  V       LQ K+L L         + V GD  R+RQ+LTNL+SN
Sbjct: 62  DLQTTDFHIGELLDQVKALFQGKLQEKMLRLSVSKPPADEMAVRGDPNRLRQVLTNLLSN 121

Query: 496 AIKFTPEGKVGIKLYVVPE---PP-------------FAKEGLKQKSKAYQSATDAVKEE 539
           AIKFT  G++ I    V E   P               A +G  Q  KA     +  K  
Sbjct: 122 AIKFTERGEIKIIWKRVDEMILPTGQDNPDVVQATNVLADQGHVQDEKAQNVHFEFPKPP 181

Query: 540 KH-----QPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATV---- 590
           +H     +  ++   D +    +      +    D D     +  +++ ED E +V    
Sbjct: 182 EHSDTGLEKAAKGVRDPSSIESRHQPLQLECDMRDADYAESDTLFDTIGEDGEGSVNMEG 241

Query: 591 -------WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
                  W    V DTGIG+ +     LF+ + Q  +   RK+GGTGLGLAICK +VE M
Sbjct: 242 PFEKPPLWFEVRVEDTGIGLTKEQQDRLFQSFSQADSSTTRKFGGTGLGLAICKGVVEAM 301

Query: 644 GGRLTVTSKVHCGSTFTFIL 663
           GGR+ V S+V  GSTF F +
Sbjct: 302 GGRIWVESEVDVGSTFVFCV 321



 Score = 96.3 bits (238), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 23/139 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           ++L+ EDNK+N ++ + M+K  GH +++V NG  AV  +Q   YD++LMD+ MPVMDGL 
Sbjct: 358 RVLVAEDNKVNQLLIRKMLKHYGHEVELVGNGQLAVDKIQNGQYDMVLMDLQMPVMDGLS 417

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           AT+ IR+                        S     IPI A+TA+ L++  E   A G+
Sbjct: 418 ATKAIRAL-----------------------SGRVADIPIFALTADVLTQGRESLGAMGL 454

Query: 981 DSFVSKPVTFQKLKECLEQ 999
             +++KP+ +  L + + Q
Sbjct: 455 TGYLTKPINWDDLSDKINQ 473


>gi|37676889|ref|NP_937285.1| hypothetical protein VVA1229 [Vibrio vulnificus YJ016]
 gi|37201433|dbj|BAC97255.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 881

 Score =  139 bits (350), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 113/319 (35%), Positives = 157/319 (49%), Gaps = 79/319 (24%)

Query: 353 KETELNKTIHITEETM---RAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
           K+ ++ + IH  E  +   RAK + LA MSHEIR+PL G++ M EILS ++L  +Q+++L
Sbjct: 353 KQQQMVEIIHAKESAISANRAKSVFLANMSHEIRTPLNGIIGMTEILSQSELSSQQKEIL 412

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH---VLQTAAASLQKILM 465
           G + +S   +L L+NDILDLSK+ESG + +   +   RE V     + Q+ A S  K + 
Sbjct: 413 GDIDTSSQSLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKATS--KNIE 470

Query: 466 LEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQK 525
           L   + +D+P +V+ D  RI+Q+LTNL+ NAIK                  F KEG    
Sbjct: 471 LHITMGEDIPAKVMADDHRIKQVLTNLVGNAIK------------------FTKEGYIST 512

Query: 526 SKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDED 585
              YQ+      E  HQ                   GY   K                  
Sbjct: 513 FVNYQA-----DEHDHQ-------------------GYLTFK------------------ 530

Query: 586 LEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
                     V DTGIGI +  L T+F  + Q      R++GGTGLGLAIC+QLV +MGG
Sbjct: 531 ----------VTDTGIGIDQAKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGG 580

Query: 646 RLTVTSKVHCGSTFTFILP 664
            LT TS    GS F+F +P
Sbjct: 581 ELTATSTKGLGSCFSFTIP 599



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 35/172 (20%)

Query: 829 KICEMQEKPDRISQSPSSSSAEVPETKP------------KPKPKILLVEDNKINVMVAK 876
           K C ++     +SQ   SSSA VP  +             +   +IL+ EDN +N  +A 
Sbjct: 716 KAC-IESLAQNLSQPTVSSSARVPAKQEVRFDTRVSASYGRNHRRILIAEDNLMNQKIAS 774

Query: 877 SMMKQLGHSIDVVNNGVEAVHAV-QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
             +++ G    + +NG EA+ A+ Q   +D +LMD  MPVMDG+ ATR IR       W+
Sbjct: 775 FFLEKAGFDYLITSNGQEALDAITQGGKFDAVLMDCMMPVMDGITATREIR------RWE 828

Query: 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987
               +G               + PIIA+TA+ L E  + CF  GMD+++ KP
Sbjct: 829 TEQGSG---------------KTPIIALTASVLEEDIQSCFEAGMDAYLPKP 865


>gi|320158979|ref|YP_004191357.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
 gi|319934291|gb|ADV89154.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
          Length = 881

 Score =  139 bits (350), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 111/319 (34%), Positives = 155/319 (48%), Gaps = 79/319 (24%)

Query: 353 KETELNKTIHITEETMRAKQ----MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
           K+ ++ + IH  E  + A +     LA MSHEIR+PL G++ M EILS ++L  +Q+++L
Sbjct: 353 KQQQMVEIIHAKESAISANRAKSVFLANMSHEIRTPLNGIIGMTEILSQSELSSQQKEIL 412

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH---VLQTAAASLQKILM 465
           G + +S   +L L+NDILDLSK+ESG + +   +   RE V     + Q+ A S  K + 
Sbjct: 413 GDIDTSSQSLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKATS--KNIE 470

Query: 466 LEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQK 525
           L   + +D+P +V+ D  RI+Q+LTNL+ NAIK                  F KEG    
Sbjct: 471 LHITMGEDIPAKVMADDHRIKQVLTNLVGNAIK------------------FTKEGYIST 512

Query: 526 SKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDED 585
              YQ+      E  HQ                   GY   K                  
Sbjct: 513 FVNYQA-----DEHDHQ-------------------GYLTFK------------------ 530

Query: 586 LEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
                     V DTGIGI +  L T+F  + Q      R++GGTGLGLAIC+QLV +MGG
Sbjct: 531 ----------VTDTGIGIDQAKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGG 580

Query: 646 RLTVTSKVHCGSTFTFILP 664
            LT TS    GS F+F +P
Sbjct: 581 ELTATSTKGLGSCFSFTIP 599



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 35/172 (20%)

Query: 829 KICEMQEKPDRISQSPSSSSAEVPETKP------------KPKPKILLVEDNKINVMVAK 876
           K C ++     +SQ  +SSS  +P  +             +   +IL+ EDN +N  +A 
Sbjct: 716 KAC-IESLAQNLSQPTASSSTRMPAKQEVCFDTRVSASYGRNYRRILIAEDNLMNQKIAS 774

Query: 877 SMMKQLGHSIDVVNNGVEAVHAV-QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
             +++ G    + +NG EA+ A+ Q   +D +LMD  MPVMDG+ ATR IR       W+
Sbjct: 775 FFLEKAGFDYLITSNGQEALDAITQGGKFDAVLMDCMMPVMDGITATREIR------RWE 828

Query: 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987
               +G               + PIIA+TA+ L E  + CF  GMD+++ KP
Sbjct: 829 TEQGSG---------------KTPIIALTASVLEEDIQSCFEAGMDAYLPKP 865


>gi|326424287|ref|NP_762701.2| chemotaxis protein CheY [Vibrio vulnificus CMCP6]
 gi|319999673|gb|AAO07691.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
          Length = 881

 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 113/319 (35%), Positives = 157/319 (49%), Gaps = 79/319 (24%)

Query: 353 KETELNKTIHITEETM---RAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
           K+ ++ + IH  E  +   RAK + LA MSHEIR+PL G++ M EILS ++L  +Q+++L
Sbjct: 353 KQQQMVEIIHAKESAISANRAKSVFLANMSHEIRTPLNGIIGMTEILSQSELSSQQKEIL 412

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH---VLQTAAASLQKILM 465
           G + +S   +L L+NDILDLSK+ESG + +   +   RE V     + Q+ A S  K + 
Sbjct: 413 GDIDTSSQSLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKATS--KNIE 470

Query: 466 LEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQK 525
           L   + +D+P +V+ D  RI+Q+LTNL+ NAIK                  F KEG    
Sbjct: 471 LHITMGEDIPAKVMADDHRIKQVLTNLVGNAIK------------------FTKEGYIST 512

Query: 526 SKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDED 585
              YQ+      E  HQ                   GY   K                  
Sbjct: 513 FVNYQA-----DEHDHQ-------------------GYLTFK------------------ 530

Query: 586 LEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
                     V DTGIGI +  L T+F  + Q      R++GGTGLGLAIC+QLV +MGG
Sbjct: 531 ----------VTDTGIGIDQAKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGG 580

Query: 646 RLTVTSKVHCGSTFTFILP 664
            LT TS    GS F+F +P
Sbjct: 581 ELTATSTKGLGSCFSFTIP 599



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 86/172 (50%), Gaps = 35/172 (20%)

Query: 829 KICEMQEKPDRISQSPSSSSAEVP-------ETKPKPK-----PKILLVEDNKINVMVAK 876
           K C ++     +SQ  +SSS  +P       +T+  P       +IL+ EDN +N  +A 
Sbjct: 716 KAC-IESLAQNLSQPTASSSTRMPAKQEVCFDTRVSPSYGRNHRRILIAEDNLMNQKIAS 774

Query: 877 SMMKQLGHSIDVVNNGVEAVHAV-QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
             +++ G    + +NG EA+ A+ Q   +D +LMD  MPVMDG+ ATR IR       W+
Sbjct: 775 FFLEKAGFDYLITSNGQEALDAITQGGKFDAVLMDCMMPVMDGITATREIR------RWE 828

Query: 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987
               +G               + PIIA+TA+ L E  + CF  GMD+++ KP
Sbjct: 829 TEQGSG---------------KTPIIALTASVLEEDIQSCFEAGMDAYLPKP 865


>gi|444378378|ref|ZP_21177577.1| hypothetical protein D515_2320 [Enterovibrio sp. AK16]
 gi|443677475|gb|ELT84157.1| hypothetical protein D515_2320 [Enterovibrio sp. AK16]
          Length = 773

 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 191/438 (43%), Gaps = 94/438 (21%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            + +R DV DTGIGIP + L T+F K+ Q     +R +GGTGLGLAI  Q+VELMGG + V
Sbjct: 395  ITVRFDVKDTGIGIPADKLDTIFEKFEQADGSMSRNFGGTGLGLAISSQIVELMGGHIEV 454

Query: 650  TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSL- 708
             S+   GS F F + ++ + + E +  P D    +D   +  D +    +     LG+L 
Sbjct: 455  ESQEGEGSRFFFTVTFERAQMPEAT--PVDALLFSDAAMLLVDDSRLNMRITSAQLGNLG 512

Query: 709  --------------FSSNGTSRSK--------KLLPNSIGFASAHKVNGFSETSYSFPSN 746
                            +     +K        KL+PNS GF+ A K+          PS 
Sbjct: 513  CQVTCCVHPEDAEEMIAERIDTAKPFKIVILDKLMPNSDGFSIASKLR--KRFGKRCPSL 570

Query: 747  NRQKETAPLEDACSVA--EVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNP 804
                    + D   +    +   LS P   +  +    + T + RG+Q  +   S     
Sbjct: 571  MMITAAPEVHDNVKLESFNIEGYLSRP---YKFNDLRNHLTRILRGQQAKLGVISM---- 623

Query: 805  ATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILL 864
                ++H E                  E   K   +++ PS+ S            ++L+
Sbjct: 624  ----SAHKE------------------EQASKEIGLAE-PSTYSG-----------RVLV 649

Query: 865  VEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRL 924
            VED  +N  V ++M+ +LG  + V  NG  A+   +   +DLI MD  MP+MDG +A+RL
Sbjct: 650  VEDTLVNQRVTQAMLGKLGVEVVVAENGQVAIDYCKEGMFDLIFMDCQMPIMDGYQASRL 709

Query: 925  IRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984
            +R  E                        +    PI+A+TANA ++  +EC   GMD ++
Sbjct: 710  LREHE------------------------YAPHTPIVALTANATAQDRDECLRCGMDDYI 745

Query: 985  SKPVTFQKLKECLEQYFP 1002
            +KPV+  +L+  ++ + P
Sbjct: 746  AKPVSKAELERMIKTHMP 763



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 18/230 (7%)

Query: 300 LFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIA---------VQ 350
           L G   F++YV+ V      + GV   G D   Q  +R    K+ EE+          ++
Sbjct: 164 LGGLVFFIVYVDVVRPLVWMSHGVTKFGADNLPQPIERPN-KKMGEELVTLYTQYNDTIE 222

Query: 351 KAKE--TEL-NKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQL 407
           K +E   EL N  I       +  + LA MSHEIR+P+ G++ MA +L  T+LD EQR+ 
Sbjct: 223 KMREYSAELKNAKIQAEMANQKKSEFLANMSHEIRTPMNGIIGMASLLKGTRLDDEQREF 282

Query: 408 LGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK---HVLQTAAASLQKIL 464
           + ++ +S   +L +INDILD SK+E+G ++L+  +    E+ K   H+ +      +K L
Sbjct: 283 IEMLETSSLSLLDIINDILDFSKIEAGKLELDFVELNLFELCKDIEHLFRLRTK--EKGL 340

Query: 465 MLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
             E  +  D+   ++GD  R+RQ++ NL+ NA+KFT  G V + +  V E
Sbjct: 341 EFECSLDQDLSPLLMGDAPRLRQVMINLVGNAVKFTQSGSVRVDIQQVDE 390


>gi|430745996|ref|YP_007205125.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
           18658]
 gi|430017716|gb|AGA29430.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
           18658]
          Length = 889

 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 126/427 (29%), Positives = 189/427 (44%), Gaps = 75/427 (17%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           + ++  V DTGIG+P     ++F  + QV     RKYGGTGLGL I  +LV LMGGR+ V
Sbjct: 382 ITLQFSVTDTGIGVPFEKRQSIFDPFEQVDGSTTRKYGGTGLGLTISSRLVALMGGRIWV 441

Query: 650 TSKVHCGSTFTFILPYQVSPIE---ENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLG 706
                 GS F F   +    I      S DP  L+ +  +  V DD            L 
Sbjct: 442 DGNPEGGSIFRFTARFPAHSIALPGRTSPDPVWLNGV--RMLVVDDNRTNRL-----ILE 494

Query: 707 SLFSSNGTSRSKKLLPNSI--GFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEV 764
            + +  G       LP ++  GFA+   +    E    F +     +  P  D   +AE 
Sbjct: 495 EVLNHWGA------LPVTVDDGFAAIAALAEAVEQGQPF-AVVLLDQMMPGMDGFQLAER 547

Query: 765 AET---LSEPESSFSHSPEPENETEVSRGKQCH-VETTSWFQNPATESTSHSEANREMIQ 820
             +   L EPE     S +  +E+    G  CH +  ++    P  +S  ++ A  +++Q
Sbjct: 548 LTSDPRLGEPEMLMLTSGDSLSES----GLSCHDLGISACLTKPVRQSDLYN-ALMDLLQ 602

Query: 821 TSKTNEPQKICEMQEKPDRISQSPSSSSAE-------VPETKPKPKP-KILLVEDNKINV 872
            S                 IS +P +  AE       V   +P  +   +LL ED+ +N 
Sbjct: 603 RSG----------------ISGTPDADGAEGRDAHLSVESGEPDGRRLNVLLAEDHLVNQ 646

Query: 873 MVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTG 932
            VA +M++ LGH ++VV+NG  AV A+   ++DLILMD+ M VMDG  A   IR+ +   
Sbjct: 647 KVASAMVRSLGHGVEVVDNGQAAVEALDRNSFDLILMDLQMTVMDGFAALAAIRARQ--- 703

Query: 933 NWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQK 992
                                   RIPIIA+TA+A+    E C   G D ++SKPVT   
Sbjct: 704 --------------------GEDSRIPIIALTAHAMKGDRERCLDVGFDGYLSKPVTINT 743

Query: 993 LKECLEQ 999
           +++ L +
Sbjct: 744 MRDELRR 750



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 98/162 (60%), Gaps = 2/162 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           E+  ++  ET+L +     E   R K + LA MSHEIR+P+ G+V M E+   T L  +Q
Sbjct: 207 EMKQRRQTETDLVQAHEEAETANRVKSEFLANMSHEIRTPMNGIVGMTELTLGTSLTAKQ 266

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR-EVVKHVLQTAAASLQKI 463
           R+ LG++ +S D +L +INDILD SK+E+G + L+   F  R EV       A  +  K 
Sbjct: 267 REYLGLVKTSADSLLSVINDILDFSKIEAGKLHLDPIPFDLRDEVADTARSLALRAHTKG 326

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           L L   IA DVP  V+GD  R+RQ+L NL+ NA+KFT +G+V
Sbjct: 327 LELACRIAPDVPQVVVGDAGRLRQVLVNLVGNAVKFTEQGEV 368


>gi|37519602|ref|NP_922979.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35210593|dbj|BAC87974.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 692

 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 143/515 (27%), Positives = 219/515 (42%), Gaps = 135/515 (26%)

Query: 211 EELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVEI 267
           E L +I +R   +  ++ + AP  +G  D ELR   +    + F  + +E ILGK+  E+
Sbjct: 103 ERLDEIHQRNLMYEKYI-EMAPDQIGLLDSELRTLTVNAALSRFSGMPKEWILGKSLWEM 161

Query: 268 FSGAGVKES--------QDFKREVLEKGLPAKREITFETELFGSKTFLIYVE-PVFSKSG 318
               G+ ES        +   R V E G P      +       K +   +  P F+  G
Sbjct: 162 ----GIPESILAQMADWEQLIRRVFETGEPGTTSFAYSVGDASCKLYCYSLAVPQFNCRG 217

Query: 319 ETIGV-----------------NYMGM-----------------------DVTDQVRKRE 338
           E + V                 ++ GM                       ++ ++VR+R 
Sbjct: 218 EVVAVLNITYDRAALEMPFNPEDWAGMGEQLMREVAAHRVTQEELARLNAELEERVRERT 277

Query: 339 ---KMA--KLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMA 392
              K+   KLR EI  ++  E EL       E   RAK   LA  SHE+R+P+ G++SM 
Sbjct: 278 VRYKLLNQKLRAEIGERQRIEVELQAAQARAEAAARAKSDFLAAASHELRTPMHGIISMT 337

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452
           ++L  + L  EQR+L  ++   G+ +L LIN+ILD+SK+E+G M+L+   F    ++  V
Sbjct: 338 DLLLESDLGAEQRELAAIIGYCGETMLSLINNILDISKIEAGRMELDVVPFELPRLIDSV 397

Query: 453 LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           +   A  L+         + D+ ++V+ D                               
Sbjct: 398 VAMFAEQLR---------SKDLRLQVLID------------------------------- 417

Query: 513 PEPPFAKEGLKQKSKAYQSATDAVKEE-KHQPKSQTASDQNGFHDKKHGEGYQDHKHDDD 571
           PE P   EG     +  Q  T+ V    K  P+ Q A        + H            
Sbjct: 418 PEVPAQLEG--DPVRLAQVLTNLVGNSLKFTPRGQIAI-------RVH------------ 456

Query: 572 PGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGL 631
              P + G    +DL     +R +V DTGIG+       LF+ + Q      RKYGGTGL
Sbjct: 457 ---PAAQGG---DDLR----LRFEVVDTGIGMAPETTGRLFQSFFQADTSTTRKYGGTGL 506

Query: 632 GLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
           GLAI +QLVELMGG++ V S++  GSTF F+LP +
Sbjct: 507 GLAISRQLVELMGGQIGVESRLEQGSTFWFVLPLK 541



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 24/145 (16%)

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
            P+  P IL+VEDN +N  V    +++LG   +V   G EA+  +  +++ L+LMD  MPV
Sbjct: 560  PQYGP-ILIVEDNAVNQKVLLRHLERLGCGAEVAETGAEALTVLASRSFALVLMDCQMPV 618

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            MDG +AT  IR  ED+                        +R PI+ +TANA +   + C
Sbjct: 619  MDGFQATAEIRRREDSA-----------------------RRTPIVGITANASAGVYDLC 655

Query: 976  FANGMDSFVSKPVTFQKLKECLEQY 1000
             A GMD  + KPV   +L   +E++
Sbjct: 656  LAAGMDDCLIKPVRRDQLTAAIERW 680


>gi|311279881|ref|YP_003942112.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308749076|gb|ADO48828.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 900

 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 178/427 (41%), Gaps = 61/427 (14%)

Query: 579 GNSMDEDLEATVWIRC------------DVYDTGIGIPENALPTLFRKYMQVSADHARKY 626
           GN++   L   V +R              ++D+GIGIPE+    +F  + Q      RKY
Sbjct: 396 GNALKFTLHGEVVLRILPVPDALHRLLFSLHDSGIGIPEDKQKVIFESFSQADNSTTRKY 455

Query: 627 GGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQ 686
           GGTGLGL I  +LVE MGG L +TS+V  GS F+F LP      ++    P  LS +  +
Sbjct: 456 GGTGLGLTISSRLVEKMGGELHLTSQVGQGSCFSFSLPVLPGARKKLLSWPPTLSGV--E 513

Query: 687 DSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSN 746
             V DD          R L  L  + G           I   S  +         +FP  
Sbjct: 514 VLVVDDNDTNL-----RLLSGLLRNMGL--------KPIAANSGKEALDIMNARAAFPLV 560

Query: 747 NRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPAT 806
               +   ++      E+  T S  +S         N  +    K+  V   S+F    T
Sbjct: 561 LLDAQMPEMDGMALALEIMSTPSLRQSKLIMLSSTGNRIDKDVLKKVGV---SFF---LT 614

Query: 807 ESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVE 866
           +     E    M+Q   +  P     +++         S S+A        P   +L+ E
Sbjct: 615 KPIDAQELFATMVQALSSMPPVPTAGVKD---------SGSAAPAASVSTSPHYHLLIAE 665

Query: 867 DNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIR 926
           DN IN  +A + + +LGHS D+  NG+E +  +    YD+ILMD+ MP MDG++    IR
Sbjct: 666 DNLINQKLALNFVGKLGHSADLAGNGLEVIEKLGNARYDVILMDLQMPEMDGVETVAAIR 725

Query: 927 SFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSK 986
                           E+ +PS        R PIIAMTA+A+    E    +G D +++K
Sbjct: 726 Q--------------AEERLPSGA-----PRQPIIAMTAHAMKGDRERFLQHGFDGYIAK 766

Query: 987 PVTFQKL 993
           P+  + L
Sbjct: 767 PIRLELL 773



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 106/179 (59%), Gaps = 2/179 (1%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           +K+    ++I  QK  E    + +   +   +AK + LA MSHEIR+P+ G++ M ++  
Sbjct: 238 QKVIGTLQDITEQKNAEAASRQAVEAAKAANQAKSEFLANMSHEIRTPMNGILGMTQLCL 297

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            T L  +QR  + +  SS   +L +IN+ILD SK+E+G + L A  F  R +++ + +  
Sbjct: 298 ETDLTADQRDYINMAHSSASALLNIINEILDFSKIEAGKLTLNAEDFAIRPLIQEITRPL 357

Query: 457 AASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
                +K + L  DI  DV IE+ GD LR+RQ+LTNLI NA+KFT  G+V +++  VP+
Sbjct: 358 MPKFSEKNIELLVDIHPDVAIEIHGDPLRLRQVLTNLIGNALKFTLHGEVVLRILPVPD 416


>gi|386817643|ref|ZP_10104861.1| integral membrane sensor hybrid histidine kinase [Thiothrix nivea
           DSM 5205]
 gi|386422219|gb|EIJ36054.1| integral membrane sensor hybrid histidine kinase [Thiothrix nivea
           DSM 5205]
          Length = 769

 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 147/303 (48%), Gaps = 73/303 (24%)

Query: 363 ITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQL 421
           + E+ ++ K + LATMSHEIR+P+ GV+ M  +L NT ++++Q + +  +  SG+ +L +
Sbjct: 247 VAEDAVKTKARFLATMSHEIRTPMNGVIGMTRLLMNTPMNKKQLEFVESIHLSGEHLLTV 306

Query: 422 INDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIG 480
           IND+LD SK+E+G + L+      R  ++ VL    + +L+K L L   +   +P+ + G
Sbjct: 307 INDVLDFSKIEAGKLDLKHEPLELRACIEDVLNLLTSKALEKNLELAYAVGPTIPLFIEG 366

Query: 481 DVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEK 540
           DV+R+RQILTNLI NAIKFT  G+  I ++V+P                           
Sbjct: 367 DVVRLRQILTNLIGNAIKFTDSGE--ITVFVMPR-------------------------- 398

Query: 541 HQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTG 600
                             HG+ Y+     +D G+ +                        
Sbjct: 399 ----------------SHHGDEYELEFQINDTGSGI------------------------ 418

Query: 601 IGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFT 660
              PE  L ++F ++ Q      R+  GTGLGLAI ++LVE+M GR+   S +  GS F 
Sbjct: 419 ---PEERLESIFEQFSQADNALTRRGEGTGLGLAISRRLVEMMDGRIWAESTLGVGSRFH 475

Query: 661 FIL 663
           F +
Sbjct: 476 FTI 478



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 26/163 (15%)

Query: 840  ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
            ++  P  S  ++ E  P     ILL EDN IN +VA S++ ++ +  ++  NG++A+ A+
Sbjct: 624  VTARPEQSRLKLGERLPL---AILLAEDNPINQIVAASILDEMAYKAEIAENGLQALEAL 680

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
            + + +D+I MD+ MP MDGL+ATR IR+                   P +      ++  
Sbjct: 681  RKKPFDVIFMDMQMPEMDGLEATRRIRA-----------------EFPPA------RQPV 717

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            IIAMTANA+    ++C   GM+ ++SKP+  + ++  L++  P
Sbjct: 718  IIAMTANAMEGDRQQCLNAGMNDYISKPILPEAIETALQRSLP 760


>gi|441499875|ref|ZP_20982047.1| GAF sensor hybrid histidine kinase [Fulvivirga imtechensis AK7]
 gi|441436335|gb|ELR69707.1| GAF sensor hybrid histidine kinase [Fulvivirga imtechensis AK7]
          Length = 576

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 115/392 (29%), Positives = 167/392 (42%), Gaps = 102/392 (26%)

Query: 306 FLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIA----------------- 348
           F I + P+  K G   G      D+T+     EK+ +  +E+A                 
Sbjct: 110 FEILITPIHDKEGNVTGGIITLHDITEIKEMLEKLKRQNQELANTNQLLQKEIAEREKAE 169

Query: 349 --VQKA----------KETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEIL 395
             ++KA          +  EL K  +  E   R K + LA MSHEIR+P+  ++ MA++L
Sbjct: 170 ADLKKAHDNLERRVKERTAELTKAKYEAENASREKDKFLANMSHEIRTPMNAIIGMAQLL 229

Query: 396 SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT 455
            +T L   Q + +  +  + D +L LINDILD SK+E+G++  E   F    +V  VL+ 
Sbjct: 230 KDTPLTEHQTKYVNSINFASDTLLSLINDILDFSKIEAGMIDFEDRTFSLENLVNEVLEI 289

Query: 456 AAASLQKI-LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
            +   Q   + LE  +   VP  V GD  R+ QIL NL+SNA+KFTP GK+ +K+     
Sbjct: 290 TSYRCQNSKVQLEKQVDSKVPTSVSGDKYRLNQILLNLLSNAVKFTPHGKIELKI----- 344

Query: 515 PPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGT 574
                 G++Q+SK        VK                               D   G 
Sbjct: 345 ------GIEQESKDEIHLNFTVK-------------------------------DTGIGI 367

Query: 575 PVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLA 634
           P   G+ +D   E       D                 RKY           GGTGLGL 
Sbjct: 368 P---GDKIDTIFEGFTQASSDTT---------------RKY-----------GGTGLGLT 398

Query: 635 ICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
           I K LVEL  GR++V S+   GS F+F +P++
Sbjct: 399 IVKSLVELQKGRVSVKSQEDIGSEFSFTIPFK 430



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 22/133 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           KIL+VEDN++N  + +S++ +    +DV  +G+ A+ A++  +YDLILMD+ MP MDG +
Sbjct: 454 KILVVEDNELNQFLIQSLLVKYKAIVDVTPDGLAALDALKNNHYDLILMDIQMPNMDGYE 513

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR IRS  D G                        +IPI+AMTA+AL    E+C   GM
Sbjct: 514 ATRKIRSTFDEGK----------------------NKIPIVAMTAHALVGEKEKCIEAGM 551

Query: 981 DSFVSKPVTFQKL 993
           D +++KP+  ++L
Sbjct: 552 DDYITKPIKVREL 564


>gi|114569187|ref|YP_755867.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339649|gb|ABI64929.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 535

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 148/301 (49%), Gaps = 73/301 (24%)

Query: 366 ETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIND 424
           E  RAK + LATMSHE+R+P+ GV+ M+ +L+ T L+  QR+++ ++  SG  +L ++ND
Sbjct: 292 EASRAKSRFLATMSHEVRTPMNGVLGMSALLATTDLEPSQREMVNLIEGSGQALLTILND 351

Query: 425 ILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVL 483
           ILDL+ +ESG  ++E   F P E+V+ V       +++K L L  +I      EV+GD  
Sbjct: 352 ILDLANIESGRFEVEQDTFNPAELVRTVAGPYRMKAMEKGLNLHLEIDPVAEREVVGDPA 411

Query: 484 RIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQP 543
           R+RQIL+NL+SNA+KF+  G+V ++  +                                
Sbjct: 412 RVRQILSNLLSNAVKFSDRGEVRVRCLM-------------------------------- 439

Query: 544 KSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGI 603
            +QTA       D+ H   ++              G  MD DL + +++           
Sbjct: 440 -TQTA-------DRAHDVTFEVG----------DTGIGMDGDLMSRIFM----------- 470

Query: 604 PENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
                      + Q  A   RK GGTGLGLAI K+L ELMGG +TV S    GS FT  L
Sbjct: 471 ----------PFSQGEAVMQRKNGGTGLGLAIAKKLAELMGGDITVESAPGAGSKFTVKL 520

Query: 664 P 664
           P
Sbjct: 521 P 521


>gi|242803435|ref|XP_002484173.1| sensor histidine kinase/response regulator Fos-1/TcsA [Talaromyces
           stipitatus ATCC 10500]
 gi|218717518|gb|EED16939.1| sensor histidine kinase/response regulator Fos-1/TcsA [Talaromyces
           stipitatus ATCC 10500]
          Length = 713

 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 157/348 (45%), Gaps = 75/348 (21%)

Query: 314 FSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ- 372
           + K G     N M   V    R      K+  ++  +KA E+ L   I   EE+ + K  
Sbjct: 282 YRKDGSRFWANVMITPVYTAGR-HVGFVKVTRDLTERKAAESRL---IAAFEESSKLKSD 337

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+P+ G++   ++L+ T +D +Q++ + ++  +G ++LQ+IND+LD SK+ 
Sbjct: 338 FLANMSHEIRTPMHGMLMSIQMLAATNVDEKQKEYINIIEDTGSVLLQIINDVLDYSKLS 397

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNL 492
           SG   +       +EVV  VL+   +S++  + L    +D +P  + GD LR RQI+ NL
Sbjct: 398 SGTFTITPGVVDVKEVVGAVLRNCQSSVKPGVDLRVHYSDQLPKHLKGDPLRYRQIIQNL 457

Query: 493 ISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQN 552
           ISNA+KFT EG V + + V  +P        Q S  Y+  T  V                
Sbjct: 458 ISNAVKFTDEGSVEVSVKVTEDP--------QDSSTYEVTTMVV---------------- 493

Query: 553 GFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLF 612
                           D   G PV   NS                             LF
Sbjct: 494 ----------------DTGIGVPVDAANS-----------------------------LF 508

Query: 613 RKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC-GSTF 659
             + + +    ++Y GTGLGL+ICK L ELM G +   S  +C GSTF
Sbjct: 509 TPFTRFADTSRKRYQGTGLGLSICKSLAELMDGSVGFASNSNCRGSTF 556



 Score = 82.8 bits (203), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 29/147 (19%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGH-SIDVVNNGVEAVHAVQCQ--NYDLILMDVCMP 914
            P+ ++LLVEDN +N  +   M+  +G   +D   NG EAV  V+ +  +Y+ ILMD+ MP
Sbjct: 591  PRKQLLLVEDNMMNQTIMLKMLNMIGFEKVDTAWNGAEAVRKVKQKPLSYNAILMDINMP 650

Query: 915  VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE 974
            VMDG+ AT  IR                             + +PIIAMT NAL   ++ 
Sbjct: 651  VMDGVDATIAIRGMS--------------------------RDVPIIAMTGNALKGDSDI 684

Query: 975  CFANGMDSFVSKPVTFQKLKECLEQYF 1001
              A+GM+ +++KPV  Q L   L ++ 
Sbjct: 685  YLASGMNDYIAKPVHRQHLVSVLLKWI 711


>gi|186682678|ref|YP_001865874.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465130|gb|ACC80931.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1403

 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 173/362 (47%), Gaps = 55/362 (15%)

Query: 344 REEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDR 402
           REE+ +   K   L +     E   RAK + LA MSHEIR+P+  V+ M ++L +T L  
Sbjct: 653 REELTL---KNFALEQAKRQAEAANRAKSEFLAMMSHEIRTPMNAVIGMTDLLLDTDLTP 709

Query: 403 EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQ 461
           +Q+  +  + SSGD +L +INDILD SK+ESG ++LE   F  R  V+  +   A  + Q
Sbjct: 710 QQQDFVETVRSSGDALLTIINDILDFSKIESGKLELEEQPFDLRACVEQAISLLAPKAAQ 769

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEG 521
           K + L   I   VP +++GD+ R+RQ+L NL++NAIKFT  G+V + + +      A + 
Sbjct: 770 KNIELVYLIQPQVPTQIVGDMTRLRQVLMNLLNNAIKFTERGEVVLSVEL-----GAGDS 824

Query: 522 LKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNS 581
           +KQ   +       V   + +P  + A+                 +       P +    
Sbjct: 825 VKQGENSSPLHPSLV---RLRPSLREAAPTTTL------------RTSSRQARPSASS-- 867

Query: 582 MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
                E+ + I+  + DTGIGI    +  LF  + Q      R+YGGTGLGL I K+L +
Sbjct: 868 -----ESPIQIQFAIKDTGIGITPEKIERLFHPFTQADVSMTRRYGGTGLGLVISKRLSK 922

Query: 642 LMGGRLTVTSK---------------------VHCGSTFTFILPYQVS--PIEENSDDPD 678
           +MGG L V S+                        GSTF F +  QV   P  E S+ P 
Sbjct: 923 MMGGTLWVESQGIVGGNPSPRWKSRKSLSSPYSSQGSTFYFTITAQVPAVPEAEFSNSPM 982

Query: 679 DL 680
            L
Sbjct: 983 QL 984



 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 80/146 (54%), Gaps = 24/146 (16%)

Query: 854  TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCM 913
            T P P  +ILL ED  +N  VA  M++++G+S DVV NGVE + A+Q Q YDL+LMDV M
Sbjct: 1125 THPLPL-RILLAEDTIVNQKVALLMLQKIGYSADVVTNGVEVLKALQKQPYDLVLMDVHM 1183

Query: 914  PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE 973
            P MDGL+  R I        W               G   H     IIA+TANA+    E
Sbjct: 1184 PEMDGLETARRI-----CQEWKV-------------GFRPH-----IIAITANAMRGDRE 1220

Query: 974  ECFANGMDSFVSKPVTFQKLKECLEQ 999
             C A GMD ++SKP+  QKL + L +
Sbjct: 1221 VCLAAGMDDYISKPIQLQKLAQALSK 1246


>gi|445497334|ref|ZP_21464189.1| aerobic respiration control sensor protein ArcB [Janthinobacterium
           sp. HH01]
 gi|444787329|gb|ELX08877.1| aerobic respiration control sensor protein ArcB [Janthinobacterium
           sp. HH01]
          Length = 884

 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 151/286 (52%), Gaps = 27/286 (9%)

Query: 230 NAPVVMGHQDKELRYRFIYNHFPSLHEED---ILGKTDVEIFSGAGVKESQDFKREVLEK 286
           N P+++ + D++ RY F   H+ +L   D   +LGK+  EIF  A      D    +   
Sbjct: 380 NLPLLIAYLDRDKRYLFTNAHYRTLWGIDPQGMLGKSVAEIFGQAADSWQGDLDHALDGG 439

Query: 287 GLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREE 346
            L  +RE     ++   + F++ + P  +  GE  G   M MD+TD+             
Sbjct: 440 RLHYEREFESGGQI---QHFMVDLVPDIAADGEVQGTYLMAMDITDR------------- 483

Query: 347 IAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQ 406
              + A+  +          +    + +A MSHEIR+P+  V+ +A +L NT+L  +QR+
Sbjct: 484 ---KNAELIQAAGEQRAAAASRAKSEFVANMSHEIRTPMNAVLGVAYLLGNTELSAQQRE 540

Query: 407 LLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV---VKHVLQTAAASLQKI 463
            + ++ SSG+++L ++ND+LD SK+E+G M+L  + F+  EV   V  V+   AA+    
Sbjct: 541 YVDMIRSSGNVLLGILNDVLDFSKIEAGRMELAPSTFKLDEVMEAVSTVMTPNAAARGIQ 600

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L +  D A  VP  V+GD +R++QIL NL+ NAIKFT  G+V +++
Sbjct: 601 LTVAADAA--VPQTVVGDAMRLQQILINLLGNAIKFTEHGQVALRV 644



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 79/144 (54%), Gaps = 27/144 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ--NYDLILMDVCMPVMDG 918
            ++LLVED+ +N +VA+ M++  G S+DV  NG  AV  ++    +YD++LMDV MPVMDG
Sbjct: 761  RLLLVEDHPLNQVVARGMLEYAGASVDVAENGQLAVDRLRAHPTDYDIVLMDVQMPVMDG 820

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
              AT  IR            E  ++              +PI+AMTA  +    E C A 
Sbjct: 821  FAATGAIRQ-----------ELKLD--------------LPILAMTAGVMQSEQERCIAA 855

Query: 979  GMDSFVSKPVTFQKLKECLEQYFP 1002
            GM+ F++KPV  +++ + + ++ P
Sbjct: 856  GMNDFIAKPVDVEQMLDIISRHIP 879



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 46/77 (59%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            V +R  V DTGIG+       LF  + Q  A   R++GGTGLGLAIC++L ELMGG + 
Sbjct: 658 AVGLRFVVRDTGIGMDLEQQSRLFEAFNQADASTTRRFGGTGLGLAICRRLAELMGGGIA 717

Query: 649 VTSKVHCGSTFTFILPY 665
           V+S    GS F   LP+
Sbjct: 718 VSSMPGKGSEFVVTLPF 734


>gi|221065881|ref|ZP_03541986.1| Hpt sensor hybrid histidine kinase [Comamonas testosteroni KF-1]
 gi|220710904|gb|EED66272.1| Hpt sensor hybrid histidine kinase [Comamonas testosteroni KF-1]
          Length = 1085

 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 111/173 (64%), Gaps = 2/173 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +   E  L +     +E   AK   L+TMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 478 DISTRVEIERALERARSAADEASEAKSTFLSTMSHEIRTPLYGVLGTLELLTATRLDSQQ 537

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKI 463
           RQ +  +  S  ++LQLI+DILD+SK+E+G +KLE   F PRE+V+    + AA + QK 
Sbjct: 538 RQYVNRIEGSSQILLQLISDILDVSKIEAGQLKLERLAFSPRELVQDCTGSYAAMAQQKG 597

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
           L+    +   +P  V GD +R+RQIL+NLISNAIKFT  G V ++  VV +PP
Sbjct: 598 LLFFSAVDTGIPDSVFGDPVRVRQILSNLISNAIKFTNVGSVIVRCLVVDQPP 650



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 26/147 (17%)

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
            P+   +IL+ EDN IN       +++LG  + +  +G +A+     Q +D +L DV MP+
Sbjct: 848  PRFSIRILVAEDNPINQTTILDQLERLGCQVTLAEDGEDALALWDVQPHDFVLTDVNMPL 907

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            M+G +  R +RS               E  M            PII +TANA+ +    C
Sbjct: 908  MNGYELARTLRS---------------EGVM-----------CPIIGITANAMLDEQRRC 941

Query: 976  FANGMDSFVSKPVTFQKLKECLEQYFP 1002
               GM++++ KP+    L + L +Y P
Sbjct: 942  INAGMNAWMVKPIGLNTLIQMLREYAP 968



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 5/94 (5%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQV-SADHARKYGGTGLGLAICKQLVELMGGRLT 648
           V ++ +V D+G+GI       LF  +  V  + H  +  G GLGL+IC +L ELMG  + 
Sbjct: 653 VTLQIEVADSGVGIDREEQNRLFTPFYIVDGSRHVVR--GAGLGLSICARLAELMGSSMQ 710

Query: 649 VTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSD 682
           V S+   GS F+  L   V    +   D  DL+D
Sbjct: 711 VKSEKQVGSVFSIALTLDVD--HQTVTDYPDLAD 742


>gi|405382156|ref|ZP_11035978.1| PAS domain S-box [Rhizobium sp. CF142]
 gi|397321644|gb|EJJ26060.1| PAS domain S-box [Rhizobium sp. CF142]
          Length = 1143

 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 161/360 (44%), Gaps = 77/360 (21%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           +  VF   GE     ++ M+ T  + +R+    L  ++   K +E EL + +   E   R
Sbjct: 552 ISTVFHVGGE----RWVNMEAT--ISERQHWVALFTDVTELKRREEELTQLLSRAEAADR 605

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD 
Sbjct: 606 AKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKSGNALLTIINDILDF 665

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQI 488
           SK+++G MK               L+ AA  L               IE + DV      
Sbjct: 666 SKIDAGQMK---------------LRKAAFDL---------------IEAVEDV------ 689

Query: 489 LTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTA 548
              L+S     +P  +  I+L V   P      +    +  Q  T+ V            
Sbjct: 690 -ATLLS-----SPAAEKDIELLVRAAPDLPAAVIGDAGRFRQIVTNLVG----------- 732

Query: 549 SDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608
              N     + G  + D   +   G                + I   + DTGIGIP   +
Sbjct: 733 ---NAVKFTERGHVFVDIGSEQSAG--------------GEIMISIRIEDTGIGIPPEKV 775

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
            T+F K+ QV A   R++ GTGLGLAI   LV+L GG + V S+   GS FT  LP+ V+
Sbjct: 776 ETVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIDVESEWGKGSVFTVKLPFAVA 835



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 22/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN++N +V   +++  G S  VVNNG EAV A +     LI+MDV MPVM+G +A
Sbjct: 1014 VLVAEDNEVNQIVFTQILQGTGLSFLVVNNGEEAVEAWERHTPRLIMMDVSMPVMNGHQA 1073

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TRLIR  E                           R+P+I +TA+AL    E C   GMD
Sbjct: 1074 TRLIREKE----------------------QGQGHRVPVIGVTAHALESDRELCLDAGMD 1111

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP++ + L++ + Q+ 
Sbjct: 1112 DYMSKPISPELLEDKIRQWL 1131


>gi|23428538|gb|AAL11449.1| putative global response regulation sensor kinase GrrS [Serratia
            plymuthica]
          Length = 908

 Score =  136 bits (342), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 159/688 (23%), Positives = 280/688 (40%), Gaps = 152/688 (22%)

Query: 322  GVNYMGMDVTDQVRKREK-----MAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLA 375
            G+N M M +T  + + ++      + LRE +   + +  EL+      +E  R K + LA
Sbjct: 238  GINSMAMSLTAYLEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLA 297

Query: 376  TMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGV 435
            +MSHE+R+PL GV+     +  T++   Q   L  +  S + +L +IND+LD SK+E+G 
Sbjct: 298  SMSHELRTPLNGVIGFTRQMLKTEMSVTQTDYLQTIERSANNLLTIINDVLDFSKLEAG- 356

Query: 436  MKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
                      + V++H+  +   +L ++++L    A +  +E+  DV            N
Sbjct: 357  ----------KLVLEHIPFSLRETLDEVIVLLAPSAHEKGLELTLDV-----------HN 395

Query: 496  AIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFH 555
             +   PE  +G             + L+ +        +A+K           ++     
Sbjct: 396  DV---PEQVIG-------------DSLRLQQIITNLLGNAIK----------FTETGNID 429

Query: 556  DKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKY 615
             +    G QDH+                      V +   ++DTGIGI E     LF+ +
Sbjct: 430  IRVELRGQQDHQ----------------------VELEVQIHDTGIGISERQQSQLFQAF 467

Query: 616  MQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSD 675
             Q  A  +R++GGTGLGL I ++LV+ MGG +   S+++ GSTF F +  ++   E    
Sbjct: 468  RQADASISRRHGGTGLGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITLELH--EGMLS 525

Query: 676  DPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVN- 734
             P  L D+  +       T G+ +  P  + +  + N  S +  ++ +S   A   K N 
Sbjct: 526  LPSSLPDLRGK-------TLGYIEANP--MAAEATLNMLSVTSLVITHSPTLAQLPKKNY 576

Query: 735  GFSETSYSFP-SNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQC 793
             F       P  +N  +  + L+ A ++A                        V     C
Sbjct: 577  DFLLVGVPIPFRDNLAQHESKLKAALNIA----------------------GRVILALPC 614

Query: 794  HVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPE 853
              +  +       E      A   +I+   +N    +  M E P R+  +        PE
Sbjct: 615  QSQINA-------EQLKQQGAIGCLIKPITSNRLFPLLRM-EPPQRLLAA--------PE 658

Query: 854  TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCM 913
             K  P   ++ V+DN  N+ +  +++ +      +  +G EA+   +    DLILMD+ M
Sbjct: 659  RKRLPL-TVMAVDDNPANLKLIGTLLAEQVEKTLLCESGEEALALARDNVLDLILMDIQM 717

Query: 914  PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE 973
            P +DG++   LIR                           H    PI+A+TA+A+S   E
Sbjct: 718  PNIDGIRTGELIRQLP------------------------HHNSTPIVAVTAHAVSGERE 753

Query: 974  ECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                 GMD +++KP+    L   L +Y+
Sbjct: 754  HLLQAGMDDYLAKPIDEAMLTRVLARYY 781


>gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region, ATPase-like:histidine
            kinase, HAMP region:histidine kinase A, N-terminal:Hpt
            [Dechloromonas aromatica RCB]
 gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region, ATPase-like:Histidine
            kinase, HAMP region:Histidine kinase A, N-terminal:Hpt
            [Dechloromonas aromatica RCB]
          Length = 923

 Score =  135 bits (341), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 180/407 (44%), Gaps = 55/407 (13%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIP +A   +F  ++Q      RKYGGTGLGLAIC+ LV++MGGR+ V S    
Sbjct: 426  VSDTGIGIPLDAQEKIFEHFLQADGSTTRKYGGTGLGLAICRHLVDMMGGRIHVESTPGK 485

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTS 715
            G+ FT  L   +  +   S +   L     +  V DD +           G  F + G +
Sbjct: 486  GAAFTVELDLPLGKLPVASPEKQALPATGARVLVVDDSSTQREVLLALLRGRGFIAEGAA 545

Query: 716  RSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSF 775
                   +S+   S  K        Y+    + Q    P  D        + L+ P    
Sbjct: 546  -------SSLAGLSVLKAAVEEGEPYALLLIDTQMPDLPGCDVVRALRADQNLA-PTRVI 597

Query: 776  SHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQE 835
              S + +    +S+ ++  ++  +    P  ++        E+++  +T           
Sbjct: 598  IISAQVDA---LSKAERASLQIAACLPKPVRQA--------ELLRAIETT---------- 636

Query: 836  KPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA 895
                + +   S +A +     K + ++L+ EDN+ N++VA++ ++++G  +   ++G +A
Sbjct: 637  ----LQRRSVSDTAVIDSPARKLRGRVLVAEDNESNLVVARAQLERMGLEVIAASDGQQA 692

Query: 896  VHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955
            +  +  +  DL+LMD  MPV+DG  AT  +R  E                     S  H 
Sbjct: 693  LDILAEETVDLVLMDCQMPVLDGFAATMALREREAV-------------------SGRH- 732

Query: 956  KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
              +P+IA+TANA+    E C   GMD +++KP + ++L   L ++ P
Sbjct: 733  --LPVIALTANAMKGDRERCKDAGMDEYLAKPYSGEELLTLLARWLP 777



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 120/200 (60%), Gaps = 13/200 (6%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLR----EEIAVQKAKETELNKTIHITEETMRAK-QMLAT 376
           G N M     +Q+R+R+          E+I  Q+ +E  L K     E   +AK + LAT
Sbjct: 223 GFNQM----VEQIRERDHWLSTHLGNLEQIVEQRTRELRLAK--EAAEAGSQAKSEFLAT 276

Query: 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
           MSHEIR+P+ GV+ M E+L  T+L+  QRQ +  +  SG  +L +INDILD SK+E+G +
Sbjct: 277 MSHEIRTPMNGVLGMTELLLGTELEPTQRQFVEAVERSGKHLLHIINDILDFSKIEAGKL 336

Query: 437 KLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
           +L+   F  R +++  L+  +  + +K L L  D+  D  + V GD LR+RQI+TNL+ N
Sbjct: 337 ELDVVDFDLRNLLEESLELFSQPARRKGLELVADLPPDEKLIVRGDPLRLRQIVTNLLGN 396

Query: 496 AIKFTPEGKVGIKLYVVPEP 515
           A+KFT  G++ ++L VV EP
Sbjct: 397 AVKFTETGEILLRLLVV-EP 415


>gi|297621362|ref|YP_003709499.1| sensory histidine kinase [Waddlia chondrophila WSU 86-1044]
 gi|297376663|gb|ADI38493.1| putative sensory histidine kinase [Waddlia chondrophila WSU
           86-1044]
 gi|337293586|emb|CCB91575.1| putative sensory histidine kinase [Waddlia chondrophila 2032/99]
          Length = 1005

 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/310 (34%), Positives = 156/310 (50%), Gaps = 33/310 (10%)

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVEIFSGAGV 273
           +K     L  ++ NA  V+  +D + RY      Y     L  E+++GKTD EIFS    
Sbjct: 628 IKETQRRLRAIIDNATSVIYVKDLKGRYLIANKQYLDLFHLTNEEVIGKTDYEIFSKDVA 687

Query: 274 KESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQ 333
            +      +VLEKG     E T   +  G  T++    P++           +  D+T+ 
Sbjct: 688 DKFSLNDNDVLEKGKAVTYEETAPLDD-GEHTYVSVKFPLYDAEDNIYATCGISTDITE- 745

Query: 334 VRKREKMAKLR-----------EEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIR 382
            RK +++ +L             EIA +KA+E  + K+             LA MSHEIR
Sbjct: 746 -RKEQELKQLEFLKQIEQSNQDLEIARKKAEEANIAKS-----------TFLANMSHEIR 793

Query: 383 SPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAK 442
           +PL GV+ M  +L NT LD+ Q +    +  SG ++L++INDILD SK+E+G + LE   
Sbjct: 794 TPLNGVIGMTSLLLNTPLDKSQEKYANRIDLSGKVLLEIINDILDFSKIEAGELNLEKIP 853

Query: 443 FRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKF 499
               E+V+ V   +Q  A   +K L LE   A D P  +IGD  RIRQ++ NL SNAIKF
Sbjct: 854 CNLEEIVEEVGELMQPKAE--EKGLNLEISYAHDTPKHLIGDPTRIRQVIMNLTSNAIKF 911

Query: 500 TPEGKVGIKL 509
           T EG V IK+
Sbjct: 912 TQEGSVAIKV 921



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 51/76 (67%)

Query: 591  WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
            +IR +V DTGIGIP+     +F K+ Q      RK+GGTGLGLAICKQL+E+M G++   
Sbjct: 928  FIRVEVTDTGIGIPQEKKMHIFEKFSQADVSTTRKFGGTGLGLAICKQLIEIMEGKIGCE 987

Query: 651  SKVHCGSTFTFILPYQ 666
            S  + GSTF F +P Q
Sbjct: 988  SIENKGSTFWFEIPLQ 1003


>gi|189424609|ref|YP_001951786.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420868|gb|ACD95266.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 995

 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 122/197 (61%), Gaps = 8/197 (4%)

Query: 315 SKSGETIGVNYMGMDVTDQVR--KREKMAKLREEIAVQKAKETELNKTIHITEETMRAK- 371
           SKSG   G+ Y G+   + +R  +R+ +  +  +I  +   E  L +     E   RAK 
Sbjct: 565 SKSG---GLLY-GLFSAELIRLQQRDLLLTVMVDITDRVNAEHALLEAKQAAESASRAKS 620

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ GV+ MAE+L+ T L  EQ Q L  + SSGD +L LINDILDLSK+
Sbjct: 621 EFLANMSHEIRTPMNGVLGMAELLAFTDLTAEQEQYLACIKSSGDNLLALINDILDLSKI 680

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LE A F  R+ +  V+ T  +++  K L    D+A+D+P  V+GD LR +QIL 
Sbjct: 681 EAGKIELEYADFSLRKAINDVVTTQISAIHTKRLQFSCDLAEDLPEIVLGDQLRFKQILL 740

Query: 491 NLISNAIKFTPEGKVGI 507
           NL+SNAIKFT  G V I
Sbjct: 741 NLLSNAIKFTDHGSVSI 757



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 22/136 (16%)

Query: 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
           P   +L+ EDN +N      ++K+LG    + +NG EA+   Q  + DLILMD+ MPVM 
Sbjct: 866 PAVTVLVAEDNVMNQQFISGLLKKLGLGCQLTSNGQEALERWQQGDIDLILMDIQMPVMG 925

Query: 918 GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
           G  A   +R  E        +E+G              + +P++A+TA+AL    E   A
Sbjct: 926 GEAALHQLRQME--------SESG--------------RHVPVVALTAHALRGDQERLLA 963

Query: 978 NGMDSFVSKPVTFQKL 993
            G D ++SKP+  ++L
Sbjct: 964 AGFDGYLSKPLNLKEL 979



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 48/78 (61%)

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
           ++R  V DTGIGI   A  T+F  + Q  +   R++GGTGLGLAI +QL ELMGG + + 
Sbjct: 770 FVRVTVADTGIGIQAEARQTIFAPFTQADSSTTRRFGGTGLGLAISRQLAELMGGDIGLE 829

Query: 651 SKVHCGSTFTFILPYQVS 668
           S+   GS F   LP+  S
Sbjct: 830 SEPGSGSRFYLDLPFGTS 847


>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1820

 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 115/185 (62%), Gaps = 5/185 (2%)

Query: 333  QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
            Q +  E+  + REE+ +   K   L +     E   RAK + LA MSHEIR+P+  V+ M
Sbjct: 1108 QAQLLEQETRQREELTI---KNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGM 1164

Query: 392  AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
              +L +T+L  +QR  +  +++SGD +L +INDILD SK+ESG ++LE   F  R  V+ 
Sbjct: 1165 TGLLLDTELTSQQRDFVETVLTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQ 1224

Query: 452  VLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
            V+   AA + QK + L   I   VP+++ GD+ R+RQILTNL++NAIKFTPEG+V + + 
Sbjct: 1225 VIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSVR 1284

Query: 511  VVPEP 515
              P P
Sbjct: 1285 SQPSP 1289



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 30/166 (18%)

Query: 837  PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
            PDR +Q  S  + ++P        +ILL ED  +N  VA  ++K+LG+  DVV NG+E +
Sbjct: 1541 PDRSAQVNSCLAQQIP-------LRILLAEDIVVNQKVALLILKKLGYRADVVANGLEVL 1593

Query: 897  HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
             A+Q Q+YD++LMDV MP MDGLKA+++I        W            P S       
Sbjct: 1594 EALQRQSYDVVLMDVNMPEMDGLKASQII-----CQTWS-----------PRS------- 1630

Query: 957  RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            R  IIAMTANA+    E C A GMD ++SKP+  ++L + L +  P
Sbjct: 1631 RPYIIAMTANAMRGDREACLAAGMDHYISKPLQLEELAKALGKCHP 1676



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 39/61 (63%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            + DTGIGI    +  LF+ ++Q  A   RKYGGTGLGL I K+L E+MGG L V S+   
Sbjct: 1303 IKDTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRGCV 1362

Query: 656  G 656
            G
Sbjct: 1363 G 1363


>gi|124268043|ref|YP_001022047.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124260818|gb|ABM95812.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 1001

 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 150/326 (46%), Gaps = 72/326 (22%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q +ATMSHEIR+P+ GV+ M E+L  T LD  QR+    +  SG+ +L++INDILD SK+
Sbjct: 341 QFMATMSHEIRTPMNGVLGMTELLLGTALDSRQRRFAQAVYRSGESLLEIINDILDFSKI 400

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           E+G  KLE A                             AD  P  ++ DVL +      
Sbjct: 401 EAG--KLELAP----------------------------ADFTPRALVEDVLEL------ 424

Query: 492 LISNAIKFTPEGK-VGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
                    P  +  G++L    EP           +  Q  T+ V              
Sbjct: 425 -------LAPRAQERGLELSFREEPGLPPALHGDALRLRQVLTNLVA------------- 464

Query: 551 QNGFHDKKHGEGYQDHKHDDDPG--TPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608
            N     +HGE   + +  +     T ++ G+ +        W+   V DTGIGIP  AL
Sbjct: 465 -NAIKFTEHGEVVVEMRRVEPTAAETALATGDRL--------WVELCVRDTGIGIPPEAL 515

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
             LF  + Q S+  AR+YGGTGLGLAI +QLVELM G +TV S+   GS F   LP  +S
Sbjct: 516 SRLFIAFSQASSGMARRYGGTGLGLAISRQLVELMSGSITVRSQPGVGSRFCVRLP--LS 573

Query: 669 PIEENSD-DPDDLSDM-ADQDSVTDD 692
           P   + D D  +L DM A +  V DD
Sbjct: 574 PASSDVDVDMLELHDMPALRVLVVDD 599



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 17/143 (11%)

Query: 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
           K    IL+VEDN +N  V   M++  G  + + ++ +E + A+  + +DLI+MD+ MP M
Sbjct: 726 KIGAHILVVEDNPVNQEVIGQMLRHFGCRVQLASSALEGLRALCAERFDLIMMDIQMPGM 785

Query: 917 DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
           DG++A    R            E    +  P++         P++A+TANAL    E   
Sbjct: 786 DGVEALGWFRR--------GPGERFAFRTPPTT---------PVVAVTANALGGDRERFL 828

Query: 977 ANGMDSFVSKPVTFQKLKECLEQ 999
             G D ++SKP    +L   L Q
Sbjct: 829 GLGFDEYLSKPFRQSQLHTMLSQ 851



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 31/166 (18%)

Query: 839 RISQSPSSSSAEVP--ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA- 895
           R+  SP+SS  +V   E    P  ++L+V+DN+ N  V ++++   G  + V N+GV A 
Sbjct: 569 RLPLSPASSDVDVDMLELHDMPALRVLVVDDNETNRTVLENLLGAWGMEVVVANDGVHAL 628

Query: 896 --VHAVQ--CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951
             +HA +   +++D+ L+D+ MP +DGL+    I +  D                     
Sbjct: 629 ERLHAERDAARSFDIALIDMQMPRLDGLQLADRISAEPD--------------------- 667

Query: 952 SNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
              F  + +I +++ +  + A+   A G   FV+KPV   +L++ +
Sbjct: 668 ---FADVKLIMLSSVSSPDDAKRAQAVGFKRFVNKPVRKAELRQAI 710


>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1817

 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 115/185 (62%), Gaps = 5/185 (2%)

Query: 333  QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
            Q +  E+  + REE+ +   K   L +     E   RAK + LA MSHEIR+P+  V+ M
Sbjct: 1105 QAQLLEQETRQREELTI---KNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGM 1161

Query: 392  AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
              +L +T+L  +QR  +  +++SGD +L +INDILD SK+ESG ++LE   F  R  V+ 
Sbjct: 1162 TGLLLDTELTSQQRDFVETVLTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQ 1221

Query: 452  VLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
            V+   AA + QK + L   I   VP+++ GD+ R+RQILTNL++NAIKFTPEG+V + + 
Sbjct: 1222 VIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEGEVVVSVR 1281

Query: 511  VVPEP 515
              P P
Sbjct: 1282 SQPSP 1286



 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 92/166 (55%), Gaps = 30/166 (18%)

Query: 837  PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
            PDR ++  S  + ++P        +ILL ED  +N  VA  ++K++G+  DVV NG+E +
Sbjct: 1538 PDRSTEINSCLAQQIP-------LRILLAEDIVVNQKVALLILKKMGYRADVVANGLEVL 1590

Query: 897  HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
             A+Q Q YD++LMDV MP MDGLKA+++I        W            PSS       
Sbjct: 1591 EALQRQFYDVVLMDVNMPEMDGLKASQII-----CQTWS-----------PSS------- 1627

Query: 957  RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            R  IIAMTANA+    E C A GMD ++SKP+  ++L + L +  P
Sbjct: 1628 RPYIIAMTANAMRGDREACLAAGMDHYISKPLQLEELAKALGKCHP 1673



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 39/61 (63%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            + DTGIGI    +  LF+ ++Q  A   RKYGGTGLGL I K+L E+MGG L V S+   
Sbjct: 1300 IKDTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMGGYLWVESRGCV 1359

Query: 656  G 656
            G
Sbjct: 1360 G 1360


>gi|428316967|ref|YP_007114849.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
 gi|428240647|gb|AFZ06433.1| PAS sensor protein [Oscillatoria nigro-viridis PCC 7112]
          Length = 2171

 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/375 (30%), Positives = 174/375 (46%), Gaps = 82/375 (21%)

Query: 312  PVFSKSGETIGVNYMGMDVTDQVRKREKM---AKLREEIAVQKAKETELNKTIHITEETM 368
            P+F  +G          D++D+ +  + +    +L +EI+ +K  E EL +     E   
Sbjct: 1616 PIFDDTGNVEYAIAAFQDISDRKQAEKTLIENVRLEQEISHRKKTEAELEQAKDAAEAAN 1675

Query: 369  RAKQ-MLATMSHEIRSPLTGVVSMAEILS-NTKLDREQRQLLGVMISSGDLVLQLINDIL 426
            +AK   LA MSHE+R+PL  ++  +++++ +T L  EQ++ L ++  SGD +L LIN +L
Sbjct: 1676 KAKSTFLANMSHELRTPLNAILGFSQLMNQDTNLLNEQKENLNIIHRSGDHLLTLINQVL 1735

Query: 427  DLSKVESGVMKLEAAKFRPREVVKHV-----LQTAAASLQKILMLEGDIADDVPIEVIGD 481
            DLSKVE+G M L    F     +  +     L+  +  LQ    L  + A DVP  +  D
Sbjct: 1736 DLSKVEAGRMTLSETNFELHHFLGEIEDMFALKAKSQGLQ----LRFECAVDVPQYIRAD 1791

Query: 482  VLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKH 541
             +++RQ+L NLI NAIKFTP G V +              +K+  K  QS  +   E  +
Sbjct: 1792 EVKLRQLLINLIGNAIKFTPSGSVSLV-------------VKKSQKNAQSQAEI--EITN 1836

Query: 542  QPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGI 601
             P+S T                                            I  +V DTG+
Sbjct: 1837 NPQSTT--------------------------------------------ITFEVKDTGV 1852

Query: 602  GIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
            G+  + L  LF+ ++Q +A   +   GTGLGL I +Q V LMGG +TV S    G  FT 
Sbjct: 1853 GMKPDELEKLFQPFVQ-TASGQKVQQGTGLGLTISRQFVRLMGGEITVISG---GKAFTP 1908

Query: 662  ILPYQVSPIEENSDD 676
             +     P+ E SDD
Sbjct: 1909 GM-----PLRELSDD 1918



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 24/131 (18%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            +P  +IL+V+D   N  +   ++K LG  +   +NG+EA+      +  LI MD+ MPV+
Sbjct: 1958 QPLYRILVVDDKDDNRQLLVKLLKPLGFEVQEASNGIEALEIWDSYSPHLIWMDMRMPVI 2017

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG +AT+ I++   T    A A                     +IA+TA+   E      
Sbjct: 2018 DGYEATKRIKT---TIKGQATA---------------------VIALTASVWEEEKAVIL 2053

Query: 977  ANGMDSFVSKP 987
            + G D FV KP
Sbjct: 2054 SAGCDDFVRKP 2064


>gi|335034321|ref|ZP_08527672.1| two component sensor kinase/response regulator hybrid [Agrobacterium
            sp. ATCC 31749]
 gi|333794286|gb|EGL65632.1| two component sensor kinase/response regulator hybrid [Agrobacterium
            sp. ATCC 31749]
          Length = 1222

 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 186/430 (43%), Gaps = 72/430 (16%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V D+GIGIP + L T+F K+ QV     R++ GTGLGLAI   LV L  G++ V S+V  
Sbjct: 829  VEDSGIGIPVDKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGKINVVSEVGR 888

Query: 656  GSTFTFILPYQVSPIEENSDDP------DDLSDMADQDSVTDDVTAGFFQFQPRTLG--S 707
            GS F   +P+QV  +E   D P      DD+  +   D   +DV       Q R+ G   
Sbjct: 889  GSAFEVDIPFQV--MERRRDVPLLSVAIDDIRVLVIDD---NDVNRRILTEQLRSWGIDG 943

Query: 708  LFSSNGTSRSKKLL-PNSIGFASAHKVNGFSETSYSFPSNN------RQKETAPLEDACS 760
                NG S    L    S+GFA    +       Y  P  N      R +     +D   
Sbjct: 944  HAVENGPSGIAVLQEAASLGFAIDAII-----LDYHMPVMNGLDVVERIRADKRFDDIAI 998

Query: 761  VAEVAETLSEPESSFSHSPEPENETEVSRGKQCH---------VETTSWFQNPATESTSH 811
            V   +  +   E+ F+      +  + +R +            V      Q+P  + T  
Sbjct: 999  VFLTSMDVVGDETLFTDLSVQAHLMKPARARLLRSTLFDVVRDVRLKRIRQHPLAQGTGG 1058

Query: 812  SEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKIN 871
             +A  E       + P +  +  E P           A VPE        +L+ EDN +N
Sbjct: 1059 EKARPE-------SRPAEKKQRAEAP-----------ATVPERSRPCLLDVLVAEDNDVN 1100

Query: 872  VMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDT 931
             +V   +++Q G    +V NG  AV A +  N  LILMDV MPVM+G +AT+ IR+ E  
Sbjct: 1101 QIVFSQILQQAGLRFLIVGNGKRAVQAWEEYNPALILMDVSMPVMNGHQATQAIRAAEQ- 1159

Query: 932  GNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
                            ++G S H   +P+I +TA+      E C   GMD ++SKP++ +
Sbjct: 1160 ----------------AAGDSRH---VPVIGVTAHTQEADRERCLEAGMDDYLSKPISPE 1200

Query: 992  KLKECLEQYF 1001
             L++ + Q+ 
Sbjct: 1201 SLEDKIAQWL 1210



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 106/161 (65%), Gaps = 2/161 (1%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL + +   E   RAK + LA MSHEIR+P+ GV+ MAE+L+ +KLD  Q+    
Sbjct: 653 KVREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSKLDTRQKTFTD 712

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEG 468
           +++ SG+ +L +INDILD SK+E+G MKL +  F P E V+ V+   ++A+L+K + L  
Sbjct: 713 IIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKDIELIV 772

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            I   V  +VIGD  R RQI+TN++ NA+KFT  G V ++L
Sbjct: 773 RIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVEL 813


>gi|398343867|ref|ZP_10528570.1| multi-sensor hybrid histidine kinase [Leptospira inadai serovar
           Lyme str. 10]
          Length = 856

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 196/424 (46%), Gaps = 84/424 (19%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           IR  V DTGIGIP+     LF  + QV     RKYGGTGLGL+I  +L+++MGGR+ + S
Sbjct: 494 IRFSVRDTGIGIPKEKQKQLFNPFYQVDTSSTRKYGGTGLGLSISYRLIKMMGGRIWLES 553

Query: 652 KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDS---VTDDVTAGF--FQFQPRTLG 706
            ++ G+TF+F    Q   +EE +    D++    ++    + DD          Q +TLG
Sbjct: 554 DINKGTTFSF--EIQAEGVEEKNQVVPDINYPGLENRKILIIDDNATNLRILSHQLQTLG 611

Query: 707 SL-FSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNN---------RQKETAPL- 755
            + FSS+    +  LL   I       +   +   Y+   +N         R+    PL 
Sbjct: 612 LMTFSSSSKEEALSLLDLGI-------LPELALLDYNLSGSNGVQIAQELRRKNFLFPLI 664

Query: 756 EDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEAN 815
             + S++++ E     +       +P  + E+ +     +  T   +  A  S+S+ E  
Sbjct: 665 LLSSSISDIKEKEIADQLFLRQLSKPVKKKELEQ-LVTEILITGTDKGKANRSSSYLEKQ 723

Query: 816 REMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVA 875
           ++++Q+                                T P     +L+ EDN+IN+ +A
Sbjct: 724 KDLLQS--------------------------------TYP---FDVLIAEDNEINLSLA 748

Query: 876 KSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
           K ++++LG+   V  NG + ++ ++   +D++LMDV MP MDG++AT++IR+      W 
Sbjct: 749 KRILQKLGYHPVVAMNGKQVLNRLREAKFDVVLMDVHMPEMDGIQATQVIRN-----TW- 802

Query: 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKE 995
                      P S      ++  IIAMTA A+    E C   GM+ +VSKP+ F++L  
Sbjct: 803 -----------PQS------EQPYIIAMTAAAMQGDREICLRAGMNDYVSKPIVFEELIH 845

Query: 996 CLEQ 999
            L +
Sbjct: 846 ALRK 849



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 105/168 (62%), Gaps = 2/168 (1%)

Query: 340 MAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNT 398
           +  L  +I V+K  E +L K     E+  +AK + LA MSHEIR+P+ GV+ M E+L ++
Sbjct: 311 ICALFTDITVRKNYEDDLKKAKEEAEKANQAKSEFLAMMSHEIRTPMNGVIGMTELLLDS 370

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AA 457
            L  E+R+   ++  SG+ +L +INDILD SK+ESG + LE+ +F   E  +  L    +
Sbjct: 371 DLTGEKREYAEIIQKSGESLLSIINDILDYSKIESGTLSLESKEFSILETAEETLDLFRS 430

Query: 458 ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           ++ +K + L   I  +VP  +IGD LR+RQ+L NL  N++KFT +G+V
Sbjct: 431 SAAEKGIDLICHIDPNVPDRIIGDKLRLRQVLINLFGNSLKFTEKGEV 478


>gi|374996962|ref|YP_004972461.1| ATPase [Desulfosporosinus orientis DSM 765]
 gi|357215328|gb|AET69946.1| putative ATPase [Desulfosporosinus orientis DSM 765]
          Length = 1932

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 188/405 (46%), Gaps = 75/405 (18%)

Query: 274  KESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVF---SKSGE-----TIGVNY 325
            +E Q F  E+L     AK  +    E  G+   ++Y+E      + SGE      I V+ 
Sbjct: 1313 EEIQQFLGELLSYRKTAKSMLCMPVESKGNMLGILYLENDLMDGAFSGEHLLVLKILVSQ 1372

Query: 326  MGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSP 384
              + + +    +    ++ E  A  KAK  EL  T    E+  +AK + LA MSHE+R+P
Sbjct: 1373 SAISIENARLYQNLEKRVEERTAQLKAKNFELKTTNLQLEQANQAKTEFLAKMSHEMRTP 1432

Query: 385  LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
            L G+  MA ++   +L  EQ + L  +I S  ++L++IN ILD SKVE+  ++LE   F 
Sbjct: 1433 LHGIFGMASLIQKGRLLPEQGEHLKSIIDSAQVLLEIINQILDSSKVEANRIELEEKTFD 1492

Query: 445  PREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
               +++ ++       Q K L ++ +   D    + GD LRI+QIL NL+SNAIK     
Sbjct: 1493 ITFLLEELIPGFLVKAQEKGLQVKIESTPDTFSGLRGDPLRIKQILANLLSNAIK----- 1547

Query: 504  KVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGY 563
                         F ++GL Q                                       
Sbjct: 1548 -------------FTEKGLIQV-------------------------------------- 1556

Query: 564  QDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHA 623
               ++   P  P +H       LE ++       D+GIGIP++ L  +F  + QV +  +
Sbjct: 1557 ---RYSVIPQNPATHEEGAPATLEMSI------EDSGIGIPQDKLDYIFEDFTQVDSSIS 1607

Query: 624  RKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
            RKYGGTGLGLAI K+L++LM G +TV S++  GS F   +P ++S
Sbjct: 1608 RKYGGTGLGLAITKKLLDLMKGSITVESRLGQGSKFQCRIPLRLS 1652



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 24/141 (17%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            K K+L+ ED+ ++    ++++  LG +  +V NG+E +  ++ + YD ++MD  MP +DG
Sbjct: 1678 KLKVLVAEDDAVSRKYVQALLHYLGCNAKMVLNGLEVLEELKAREYDCVIMDKNMPELDG 1737

Query: 919  LKATRLIRSFED-TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            ++ TR IR  E  TG                       K +PIIA+TA+AL+   E+  A
Sbjct: 1738 IETTRRIRRNEALTG-----------------------KHLPIIALTASALAGDREKLLA 1774

Query: 978  NGMDSFVSKPVTFQKLKECLE 998
             GMD F++KP+    L + LE
Sbjct: 1775 AGMDYFITKPIHEAHLIQLLE 1795


>gi|159185161|ref|NP_355290.2| two component sensor kinase/response regulator hybrid [Agrobacterium
            fabrum str. C58]
 gi|159140432|gb|AAK88075.2| two component sensor kinase/response regulator hybrid [Agrobacterium
            fabrum str. C58]
          Length = 1231

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 186/430 (43%), Gaps = 72/430 (16%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V D+GIGIP + L T+F K+ QV     R++ GTGLGLAI   LV L  G++ V S+V  
Sbjct: 838  VEDSGIGIPVDKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGKINVVSEVGR 897

Query: 656  GSTFTFILPYQVSPIEENSDDP------DDLSDMADQDSVTDDVTAGFFQFQPRTLG--S 707
            GS F   +P+QV  +E   D P      DD+  +   D   +DV       Q R+ G   
Sbjct: 898  GSAFEVDIPFQV--MERRRDVPLLSVAIDDIRVLVIDD---NDVNRRILTEQLRSWGIDG 952

Query: 708  LFSSNGTSRSKKLL-PNSIGFASAHKVNGFSETSYSFPSNN------RQKETAPLEDACS 760
                NG S    L    S+GFA    +       Y  P  N      R +     +D   
Sbjct: 953  HAVENGPSGIAVLQEAASLGFAIDAII-----LDYHMPVMNGLDVVERIRADKRFDDIAI 1007

Query: 761  VAEVAETLSEPESSFSHSPEPENETEVSRGKQCH---------VETTSWFQNPATESTSH 811
            V   +  +   E+ F+      +  + +R +            V      Q+P  + T  
Sbjct: 1008 VFLTSMDVVGDETLFTDLSVQAHLMKPARARLLRSTLFDVVRDVRLKRIRQHPLAQGTGG 1067

Query: 812  SEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKIN 871
             +A  E       + P +  +  E P           A VPE        +L+ EDN +N
Sbjct: 1068 EKARPE-------SRPAEKKQRAEAP-----------ATVPERSRPCLLDVLVAEDNDVN 1109

Query: 872  VMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDT 931
             +V   +++Q G    +V NG  AV A +  N  LILMDV MPVM+G +AT+ IR+ E  
Sbjct: 1110 QIVFSQILQQAGLRFLIVGNGKRAVQAWEEYNPALILMDVSMPVMNGHQATQAIRAAEQ- 1168

Query: 932  GNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
                            ++G S H   +P+I +TA+      E C   GMD ++SKP++ +
Sbjct: 1169 ----------------AAGDSRH---VPVIGVTAHTQEADRERCLEAGMDDYLSKPISPE 1209

Query: 992  KLKECLEQYF 1001
             L++ + Q+ 
Sbjct: 1210 SLEDKIAQWL 1219



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 106/161 (65%), Gaps = 2/161 (1%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL + +   E   RAK + LA MSHEIR+P+ GV+ MAE+L+ +KLD  Q+    
Sbjct: 662 KVREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSKLDTRQKTFTD 721

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEG 468
           +++ SG+ +L +INDILD SK+E+G MKL +  F P E V+ V+   ++A+L+K + L  
Sbjct: 722 IIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKDIELIV 781

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            I   V  +VIGD  R RQI+TN++ NA+KFT  G V ++L
Sbjct: 782 RIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVEL 822


>gi|427733874|ref|YP_007053418.1| PAS domain-containing protein [Rivularia sp. PCC 7116]
 gi|427368915|gb|AFY52871.1| PAS domain S-box [Rivularia sp. PCC 7116]
          Length = 1487

 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 213/460 (46%), Gaps = 83/460 (18%)

Query: 217  LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPS---LHEEDILGKTDVEIFSG--A 271
            L++ +  L  VL N   V+  +D E RY        +   L  E +LG  D E+F     
Sbjct: 852  LEKNEKQLQAVLDNTTSVIYVKDIEGRYLLGNKQLCAVTGLELEQLLGNRDSELFPPEIY 911

Query: 272  GVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331
             V E+ D  + + EK +    EI  +++  G+  ++    P+  + G    V  +  D+T
Sbjct: 912  QVFETND-NKVIEEKTVLEFEEILPQSD--GNHNYISIKAPLCDEEGNPYAVCGISTDIT 968

Query: 332  DQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVS 390
             Q   +EK+ ++  E+   +AKE          E   +AK   LA M+HE+R+PL  ++ 
Sbjct: 969  KQTSIQEKLNQINAELV--RAKEA--------AEAANQAKSDFLARMTHELRTPLNAILG 1018

Query: 391  MAEILS-NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF---RPR 446
              +IL+ N KL+ +Q+Q L  ++ S   +L LINDILD+SK+E+G+ ++    F   R  
Sbjct: 1019 FTQILNRNPKLENKQKQYLDTILRSSKHLLGLINDILDISKIEAGMAEVHVNTFDLYRLL 1078

Query: 447  EVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVG 506
            + ++ +L   A +  K L L+ +   ++P  V  D  ++RQIL NL+ NAIKFT +G V 
Sbjct: 1079 DGIEAMLYIKARA--KKLRLKFEFDPELPQYVQADKSKLRQILINLLQNAIKFTDKGSVV 1136

Query: 507  IKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDH 566
            +++ +   PP                                                  
Sbjct: 1137 LRVTIT--PPC------------------------------------------------- 1145

Query: 567  KHDDDPGTPVSHGNSMDEDLE-----ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSAD 621
             +D   G+PV+ G     +       +++ +   V DTG GI    L  +F  ++Q +  
Sbjct: 1146 -NDGACGSPVNLGEVEKVEEVENSSPSSLCLYFQVEDTGRGIAPEELNHIFDAFVQSNPT 1204

Query: 622  HARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
            +  +  GTGLGL+ICK+ VELMGG + + S V  G+T  F
Sbjct: 1205 YQVE-DGTGLGLSICKRFVELMGGAINIESGVGEGTTVKF 1243



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 28/169 (16%)

Query: 843  SPSSSSAEVPETKPKP-----KP-----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNG 892
            S +  + EV ++ PK      KP     +IL+VEDN  N  +   ++  LG  +    NG
Sbjct: 1248 SLAEKTLEVTQSIPKGNILGLKPNQLNNRILVVEDNWENRQLLLQILVPLGFEVIEAVNG 1307

Query: 893  VEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
             EA+   + +  +LILMD+ MPVMDG +AT++I+   +            E  +PS    
Sbjct: 1308 QEAIEIWEKEQPNLILMDMRMPVMDGYEATKIIKQKMNRN----------EPEIPS---- 1353

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                +  IIA+TA A +E  +     G + F+ KP   + L + + +Y 
Sbjct: 1354 ----KTAIIALTATAFNEDRKFMLELGCNDFIRKPFQQEVLLDKIARYL 1398


>gi|325106899|ref|YP_004267967.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324967167|gb|ADY57945.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 929

 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 212/483 (43%), Gaps = 105/483 (21%)

Query: 223 FLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHE----EDILGKTDVEIFSGAGVKESQD 278
            L  +L++ P  +  +D E R+  +     +L +     +I+GK+D + F      E+  
Sbjct: 140 LLQTLLEHLPDAIYFKDAESRFTRVSGSMATLLKVKDASEIVGKSDADFFPKEFAAEAYS 199

Query: 279 FKREVLEKG--LPAKREITFETELFGSKTFLIYVEPVFSK-SGETIGVNYMGMDVTDQVR 335
            ++ +LE G  +  K E+    +  G +T++   + V     G  IG   +  D+T Q  
Sbjct: 200 DEQWLLETGSMMIGKEEMPIWAD--GRQTWVSTTKGVLRDVEGNVIGTFGISHDITRQ-- 255

Query: 336 KREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEI 394
                          K  E EL       E   RAK   LA MSHEIR+P+  ++ M+E+
Sbjct: 256 ---------------KNAEQELKAAKEAAESANRAKSDFLANMSHEIRTPMNAIIGMSEL 300

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
           L +++L  +Q   +  ++ S + +L +IN+ILD SK+E+G ++L   +   R++V   L+
Sbjct: 301 LLDSELQHQQDVYVRTVLDSAESLLSIINEILDFSKIEAGHLELSWERIDLRDLVVETLR 360

Query: 455 TAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
           + AA + +K L L   +   +P  V+GD +RIRQIL NL+ NAIKFT  G++ +++    
Sbjct: 361 SLAARAHRKGLELAWRVDPSIPQVVMGDPVRIRQILMNLVGNAIKFTEAGEIVVQV---- 416

Query: 514 EPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPG 573
                        K+ + +TD+V  E H            F  +  G G Q         
Sbjct: 417 -------------KSLEMSTDSV--ELH------------FEVRDTGIGIQ--------- 440

Query: 574 TPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGL 633
                                          ++ L  +F  + Q  A   R++GGTGLGL
Sbjct: 441 -------------------------------QDRLQKIFDAFEQADASTTRQFGGTGLGL 469

Query: 634 AICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDS----V 689
           AI  +L   MGG +   S +  GS F F +    S   E  D   D+  + D DS    V
Sbjct: 470 AIASRLASAMGGMIWAESMLGQGSVFHFKIQLTSSSRNEILDSQVDV--LPDLDSRPVLV 527

Query: 690 TDD 692
            DD
Sbjct: 528 VDD 530



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 16/145 (11%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            P   ILL ED   N  +A +++++ GH +DV  NG  A        YDLILMDV MP MD
Sbjct: 666  PSLTILLAEDGHANQCLATAVLQKWGHEVDVAENGRIAFEKYLTSRYDLILMDVQMPEMD 725

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +AT+ IR+ E T                S G +     IPIIAMTA A+    E C  
Sbjct: 726  GYQATQAIRNHEAT----------------SKGEAKRGGHIPIIAMTARAMKGDRERCLD 769

Query: 978  NGMDSFVSKPVTFQKLKECLEQYFP 1002
             GMD +VSKP+  + L E + ++FP
Sbjct: 770  AGMDEYVSKPIRRKALYEAMSRFFP 794


>gi|424882919|ref|ZP_18306551.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
 gi|392519282|gb|EIW44014.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
          Length = 1131

 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 122/207 (58%), Gaps = 10/207 (4%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           +  VF   GE     ++ MD T  V K +    L  ++   K++E EL + +   E   R
Sbjct: 542 ISTVFHVGGE----RWVNMDAT--VSKGQHWVALFTDVTELKSREEELRQLLSRAEAADR 595

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD 
Sbjct: 596 AKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKSGNALLTIINDILDF 655

Query: 429 SKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           SK+++G MKL  A F   E V+ V  L ++ A+ + I +L    A D+P  VIGD  R R
Sbjct: 656 SKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLV-RAAPDLPAAVIGDAGRFR 714

Query: 487 QILTNLISNAIKFTPEGKVGIKLYVVP 513
           QI+TNL+ NA+KFT  G V + +   P
Sbjct: 715 QIVTNLVGNAVKFTERGHVFVDVGFQP 741



 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 22/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN++N +V   +++  G S  VV+NG EAV A +     +I+MDV MPVM+G +A
Sbjct: 1002 VLVAEDNEVNQIVFTQILQGTGLSFLVVDNGEEAVAAWERYTPRIIMMDVSMPVMNGHQA 1061

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T++IR  E             EQ            R+PII +TA+AL    E C   GMD
Sbjct: 1062 TQMIREREK------------EQG----------HRVPIIGVTAHALESDRELCLDAGMD 1099

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP++ + L+E + Q+ 
Sbjct: 1100 DYMSKPISPELLEEKIRQWL 1119



 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 47/73 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP   L ++F K+ QV A   R++ GTGLGLAI   LV+L GG + V S+   
Sbjct: 753 IEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYINVESEWGK 812

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 813 GSVFTINLPFAVA 825


>gi|455789412|gb|EMF41341.1| PAS domain S-box protein [Leptospira interrogans serovar Lora str. TE
            1992]
          Length = 875

 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/416 (28%), Positives = 189/416 (45%), Gaps = 73/416 (17%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGI E  L  LFR + QV +   RKYGG+GLGL I K+L ELM G +TV S+V+ 
Sbjct: 521  VKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGEITVKSQVNS 580

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTA-GFFQFQPRTLGSLFSSNG- 713
            GS   F L      +E   + P  + ++  ++  T  V +   FQF+ + +      NG 
Sbjct: 581  GSE--FSLSILTEKLE--YEIPAGVQELHSKNLATSAVISIQEFQFKEQ-IKKFCERNGF 635

Query: 714  ---TSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE 770
                +R+ K    +I      +  G   T  +FP  N             ++E+   L +
Sbjct: 636  LVKMARTAK---ETIRIIGEEERIGVFLTDLNFPDMN-------------LSEMLNELKK 679

Query: 771  PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKI 830
               S   +     E E+      ++ T S F  P               Q     +P  +
Sbjct: 680  QNPSLKLTVILFMEKELK--DSYYLVTNSLFNRPG-------------FQIFMMFKPILL 724

Query: 831  CEMQEK-----PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHS 885
             E+ +      P ++ +  + +   + E  P    +ILLVEDN IN  +A  ++ +LG++
Sbjct: 725  EELSKNFEKAFPIKVLKKQNENKKFLSEKIP---LQILLVEDNVINQKIALRLLTKLGYN 781

Query: 886  IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945
             D   NG+E +  ++ +NYDLI MD+ MP +DG + T  IR  +D G           ++
Sbjct: 782  ADSALNGLEGIEKLKTKNYDLIFMDIQMPEIDGYETTFQIR--KDFG-----------KS 828

Query: 946  MPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             P            I+AMTANA+    E+C   GM++++SKP+  Q ++  +   F
Sbjct: 829  KPV-----------IVAMTANAMEGDREKCLEAGMNAYISKPIQIQDIESTIVLLF 873



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 102/162 (62%), Gaps = 2/162 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           EI  +K  E  L +   I E   +AK   LA MSHEIR+PL GV+    +L  T L+ EQ
Sbjct: 340 EITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTVSLLEGTFLNTEQ 399

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKI 463
           ++ L ++ SSG  +L L+NDILDLS++ESG +KLE     P ++   V+      + +K 
Sbjct: 400 KEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLTNEVVNLFRPMAEEKG 459

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           L++E +++ +VP  +I D  R+RQ+LTNLI N+IKFT +GK+
Sbjct: 460 LVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEKGKI 501


>gi|152994178|ref|YP_001339013.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150835102|gb|ABR69078.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 912

 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/423 (29%), Positives = 180/423 (42%), Gaps = 80/423 (18%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            + ++C+V D+GIGI    L  LF  + Q      R YGGTGLGL I +QL ELM G + V
Sbjct: 340  ILLQCEVSDSGIGISSTQLEQLFCPFTQADNSVTRVYGGTGLGLTITRQLCELMNGEIKV 399

Query: 650  TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDM----ADQDSVTDDVTAGF---FQFQP 702
             S V  GSTFT +LP +V  ++  +   D  + +     D   ++ D+ A     F  + 
Sbjct: 400  ESDVGKGSTFTVLLPLKVPTLQPKNAAIDSANMLKALVVDDHPLSRDILAKLLTNFGIES 459

Query: 703  RTLGSLFSS-NGTSRSKKLLPNSIGFASAH---KVNGFSETSYSFPSNNRQKETAPLEDA 758
              +GS + + +   +S +   + + F       ++ G      S    N  KE AP    
Sbjct: 460  TCVGSGWEAIDAIQQSDQ---SGVAFDVVFMDWQMPGIDGIETSKKIKNLFKELAPPILM 516

Query: 759  CSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREM 818
             S  E             H  +P  +T + R          + + P  +ST     N+  
Sbjct: 517  ISAYE------------KHHIQPHLDTGIIR---------QFIEKPIGKSTLFDAINQFF 555

Query: 819  IQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSM 878
                     +KI    +K   I+  P  SS             ILLVEDN IN  VA   
Sbjct: 556  -------NIEKIAISNKK---IAPIPQLSSFH-----------ILLVEDNLINQQVALGY 594

Query: 879  MKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938
            +K  G  +D   NG  A+  ++   YDLILMD+ MPVMDGL A+ +IR            
Sbjct: 595  LKSTGVQVDCAENGKIAIDKIKGTQYDLILMDIQMPVMDGLTASAIIRGM---------- 644

Query: 939  EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
            + G E              +PIIAMTA+   E  E+  + GM++ + KP+    L + L 
Sbjct: 645  DLGYE--------------LPIIAMTAHTSPEDKEKSLSVGMNNHIPKPIPSDLLYKTLS 690

Query: 999  QYF 1001
             Y 
Sbjct: 691  NYL 693



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/172 (39%), Positives = 106/172 (61%), Gaps = 10/172 (5%)

Query: 341 AKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTK 399
           AK+RE  A  +  + EL       EE + AK   +A MSHEIR+P+  V+ ++++  NT 
Sbjct: 166 AKVRERTAALELAKAEL-------EEALEAKSSFVARMSHEIRTPINAVIGLSDLALNTS 218

Query: 400 LD-REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAA 457
            + +EQ+  L  +  SGD++L L+N++LD SK+E+G +  E+  F   ++++  +     
Sbjct: 219 PNHKEQQDYLQKIRDSGDILLSLVNNVLDFSKIEAGKLTAESVCFSTEKLIRTTVNMNVF 278

Query: 458 ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            +  K L L  DIADD+P  ++GD LRI+QIL NL+SNAIKFT  G + I+L
Sbjct: 279 GAYAKKLELVTDIADDIPEYLLGDPLRIQQILVNLVSNAIKFTESGSIVIRL 330


>gi|241205856|ref|YP_002976952.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859746|gb|ACS57413.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 1131

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 122/207 (58%), Gaps = 10/207 (4%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           +  VF   GE     ++ MD T  V K +    L  ++   K++E EL + +   E   R
Sbjct: 542 ISTVFHVGGE----RWVNMDAT--VSKGQHWVALFTDVTELKSREEELRQLLSRAEAADR 595

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD 
Sbjct: 596 AKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKSGNALLTIINDILDF 655

Query: 429 SKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           SK+++G MKL  A F   E V+ V  L ++ A+ + I +L    A D+P  VIGD  R R
Sbjct: 656 SKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLV-RAAPDLPAAVIGDAGRFR 714

Query: 487 QILTNLISNAIKFTPEGKVGIKLYVVP 513
           QI+TNL+ NA+KFT  G V + +   P
Sbjct: 715 QIVTNLVGNAVKFTERGHVFVDVGFQP 741



 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 28/161 (17%)

Query: 847  SSAEVPETKPKPKPK------ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            + A VP   P P+ +      +L+ EDN++N +V   +++  G S  VV NG EAV A +
Sbjct: 981  TEAIVPAPAPVPQKRAAEFVDVLVAEDNEVNQIVFTQILQGTGLSFLVVENGEEAVAAWE 1040

Query: 901  CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
                 +I+MDV MPVM+G +AT+ IR  E                        H  R+PI
Sbjct: 1041 RYTPRIIMMDVSMPVMNGHQATQTIRERE----------------------KGHGHRVPI 1078

Query: 961  IAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            I +TA+AL    E C   GMD ++SKP++ + L+E + Q+ 
Sbjct: 1079 IGVTAHALESDRELCLDAGMDDYMSKPISPELLEEKIRQWL 1119



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 47/73 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP   L ++F K+ QV A   R++ GTGLGLAI   LV+L GG L V S+   
Sbjct: 753 IEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGK 812

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 813 GSVFTINLPFAVA 825


>gi|388255746|ref|ZP_10132927.1| MmoS [Cellvibrio sp. BR]
 gi|387939446|gb|EIK45996.1| MmoS [Cellvibrio sp. BR]
          Length = 794

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 180/410 (43%), Gaps = 69/410 (16%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGI  ++   LF  + Q  A   RKYGGTGLGLAICK L ELMGG++ V S+   
Sbjct: 428 VQDSGIGIDMSSAGNLFDSFNQADASTTRKYGGTGLGLAICKSLAELMGGKIGVESEKGR 487

Query: 656 GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFF--QFQPRTLGSLFSSNG 713
           GSTF F +      + + +  P + S+   ++     V  G    +F  R       +  
Sbjct: 488 GSTFWFTVRLAQESVCDLTSAPPEKSEHLLRNKKLLLVEGGVMLAEFIARCCKDWGVNVE 547

Query: 714 TSRSKKLLPNSIGFA-SAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPE 772
            +RS K     +  A  + +   F    YS P      + + LE A  + +V E    P 
Sbjct: 548 AARSAKTALAQLKHAMHSGEPFDFVGVDYSLP------DASGLEFAQLLRDVPEFSELPL 601

Query: 773 SSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICE 832
             FS      ++ ++ R               A  S      + +++Q            
Sbjct: 602 FMFSPGDVYHDQLQLRR--------------LAVHSVVRKPISMKLLQR----------- 636

Query: 833 MQEKPDRISQSPSSSSAEVPETKPKPKP-------KILLVEDNKINVMVAKSMMKQLGHS 885
                + I+ S   ++ E+P  + K +        ++L+ EDN +N MV K ++ +L   
Sbjct: 637 -----ELIALSGHEAAPELPSERNKQQDLAKFSHLRVLVAEDNPVNRMVIKGLLGKLSIV 691

Query: 886 IDVVNNGVEAVHAVQCQ--NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIE 943
                NGVEA  A Q Q   ++L+LMD  MP MDG +ATR IR +E             E
Sbjct: 692 PVFAENGVEACDAAQQQKNRFNLVLMDCEMPEMDGFEATRSIRDYERR-----------E 740

Query: 944 QAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKL 993
              P          IPIIA+TA+AL E  E  FA GM+ ++SKP+T   L
Sbjct: 741 GLTP----------IPIIALTAHALQEHREAVFACGMNYYLSKPITLDTL 780



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 118/195 (60%), Gaps = 9/195 (4%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETEL--NKTIHITEETMRAK-QMLATMS 378
            +N+M   + D + +R  +     EIA+   KE +L   +  +  E+  RAK Q LATMS
Sbjct: 225 AINHMRETLLDDIEQRHAI-----EIALLTEKEEKLETRRQKNAAEDASRAKSQFLATMS 279

Query: 379 HEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKL 438
           HEIR+P+ GV+ M E+L +T LD  Q+  + V+  SG+ +L +INDILD SK+E+G M+L
Sbjct: 280 HEIRTPMNGVIGMLEMLRDTPLDDNQKHYIDVIHRSGETLLTIINDILDYSKIEAGKMEL 339

Query: 439 EAAKFRPREVVKHVLQTAAASLQKI-LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAI 497
           E   F   E+V++ +Q   A+  K  + L G +   VP  + GD  R+RQI+ NL+ NA 
Sbjct: 340 EETTFELDELVENCVQLFGATANKRQIELFGGLLPGVPRWLRGDPTRLRQIIINLLGNAF 399

Query: 498 KFTPEGKVGIKLYVV 512
           KFT EG + +++ V+
Sbjct: 400 KFTSEGFISLQVSVL 414


>gi|449138838|ref|ZP_21774089.1| multi-sensor hybrid histidine kinase [Rhodopirellula europaea 6C]
 gi|448882612|gb|EMB13175.1| multi-sensor hybrid histidine kinase [Rhodopirellula europaea 6C]
          Length = 848

 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 158/289 (54%), Gaps = 24/289 (8%)

Query: 222 NFLHFVLQNAPVVMGHQDKELRY----RFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQ 277
           + L  +L N P  +  +D + R+    R +   F     +++ G+TD +IF+    + ++
Sbjct: 142 SLLKTLLANIPDSIYFKDIDSRFIRVSRAMAMKFGRASVDEVHGRTDADIFTPEHAEGAR 201

Query: 278 DFKREVLEKGLPAKREITFETELFGSKTFLIYVE-PVFSKSGETIGVNYMGMDVTDQVRK 336
             +  V+E G      +  ET      T+ +  + P+ S +GE IG   +  D+TD  R 
Sbjct: 202 LDELRVIETGEALVDRVERETWPDREDTWCMTTKMPLRSDTGEIIGTFGISRDITDLKRS 261

Query: 337 REKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEIL 395
                            E  L++ + + +   R+K + LA MSHEIR+P+  ++ MA++L
Sbjct: 262 -----------------EAALHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLL 304

Query: 396 SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT 455
           S TKLD +Q+  + ++  S + +L+LINDILD SK+E+  ++LE+  F   + ++  L++
Sbjct: 305 SQTKLDADQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLSKTIESTLRS 364

Query: 456 -AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
            +  + +K L L+ DI+ ++P  +IGD  R+RQ+LTNLI NAIKFT  G
Sbjct: 365 FSFKASEKGLELQCDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHG 413



 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 22/139 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ ED   N  V   +++ LGH   + ++G E +   +  +YD++LMD+ MPVMDGL+A
Sbjct: 554  VLVAEDGVTNQHVIAGLLRSLGHKCSIASDGRETLTKWRSDSYDVVLMDMHMPVMDGLEA 613

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR  E    W               G+  H    PI+A+TA A+SE A  C   GMD
Sbjct: 614  TRAIRQEE----W---------------GTERH---TPIVALTAAAMSEDAAACREAGMD 651

Query: 982  SFVSKPVTFQKLKECLEQY 1000
            S+++KP+  +KL++ L  Y
Sbjct: 652  SYLTKPIHSRKLRDALAPY 670



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 55/99 (55%), Gaps = 12/99 (12%)

Query: 583 DEDLEAT------------VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
           D DL AT            V +R  V D+GIGIP      +   + Q  A   R++GGTG
Sbjct: 429 DRDLAATSNGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTG 488

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSP 669
           LGL+I +QLVELMGG L + S+V  G+TF+F L   V P
Sbjct: 489 LGLSISRQLVELMGGELRLKSEVGVGTTFSFQLKMPVCP 527


>gi|443478802|ref|ZP_21068507.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
           biceps PCC 7429]
 gi|443015864|gb|ELS30660.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
           biceps PCC 7429]
          Length = 895

 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 192/410 (46%), Gaps = 55/410 (13%)

Query: 275 ESQDFKREVLEKGLP--AKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTD 332
           ++Q+   +V ++G+P   K   +   E    K+ L    P+ S     +GV  +G    +
Sbjct: 524 KAQNLIAQVFKEGIPIEVKAGESHLVESLPVKSALCV--PIESSRSGRLGVLAIGHFHLE 581

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIH--------ITEETMRAKQMLATMSHEIRSP 384
           +   RE +  L     VQ A      + I+        + E T    Q LA MSHE+R+P
Sbjct: 582 RASSREDL-NLLASFGVQAAIAIGNAQLINQIEAQNAQLLEATQLKSQFLANMSHELRTP 640

Query: 385 LTGVVSMAEILSNTK---LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
           +  ++  +++L   +   L   Q  ++  ++ +G  +L LINDILDLSK+E+G M+    
Sbjct: 641 MNAIIGFSQVLLRQRRDVLSSSQIDMVERILRNGKNLLDLINDILDLSKIEAGKMESHPE 700

Query: 442 KFRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
            F   E++ H    LQ  A       + + +I       +  D +RI+Q++TNL+SNAIK
Sbjct: 701 LFNLDELIHHTCESLQPLATVKSLNFIFKNEIGT---CAIFHDSIRIKQVITNLVSNAIK 757

Query: 499 FTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKK 558
           FT  G+V ++L         K      S    ++ +  + ++ +   +   + N   +  
Sbjct: 758 FTDCGEVVVEL---------KYANNSASMPEIASKEIKEIKEIKEIKEMPVETNNLSE-- 806

Query: 559 HGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQV 618
                      + P +P +  N           I   V DTGIGI      T+F ++ QV
Sbjct: 807 -----------EIPSSPFAKSN-----------ILISVRDTGIGIEPEFQRTIFEQFRQV 844

Query: 619 SADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
                RK+GGTGLGLAI +QLV LMGG + V S V+ GSTFT  LP ++S
Sbjct: 845 DQSSTRKHGGTGLGLAITEQLVILMGGAIYVESVVNQGSTFTVELPPRLS 894


>gi|254445248|ref|ZP_05058724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Verrucomicrobiae bacterium DG1235]
 gi|198259556|gb|EDY83864.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Verrucomicrobiae bacterium DG1235]
          Length = 800

 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 185/429 (43%), Gaps = 94/429 (21%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            I   V D+GIGIP +    LF+ + QV +   RKYGGTGLGLAI K+L ELMGG + V S
Sbjct: 440  IEFTVKDSGIGIPADKQSRLFKSFSQVDSSTTRKYGGTGLGLAISKKLTELMGGEMRVES 499

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDD----------LSDMADQDSVTDDVTAGFFQFQ 701
                GS+F F +   VS     S D D+          L  +   + + + +TA   +++
Sbjct: 500  SEGSGSSFIFTIVSPVSSPVVYSPDFDERGESLVSGKSLLVVQPNEVIGEKITAQLHRWK 559

Query: 702  PRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVN-GFSETSYSFPSNNRQKETAPLEDACS 760
             +     F++         +  +   A AHK      +  Y      R  +TA  E AC 
Sbjct: 560  AKV---QFAAT--------IDQATELAQAHKFAIALVDQRYGAEETKRLLQTARSESACP 608

Query: 761  VAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPA--TESTSHSEANREM 818
               + E      + F  +   E + +        V+ +S     A   +S +H+   R  
Sbjct: 609  KIRLIEI-----APFGKTAPTERDAQTLSKP---VKPSSLLDALAKSLQSKNHT---RNA 657

Query: 819  IQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSM 878
             + +KT +  K+ E    P RI                      L+ EDNKIN  V K +
Sbjct: 658  TKDAKTEDHAKLGE--NCPLRI----------------------LMAEDNKINQKVVKLV 693

Query: 879  MKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938
            +KQL +SIDV N+G+E +  +    YD++LMDV MP MDG +ATR I             
Sbjct: 694  LKQLSYSIDVANDGLEVLDKLDQNQYDVVLMDVQMPNMDGYEATREI------------- 740

Query: 939  EAGIEQAMPSSGSSNHFKRIP------IIAMTANALSESAEECFANGMDSFVSKPVTFQK 992
                            +KR P      IIA+TANA+    E   A GM  +VSKP+    
Sbjct: 741  ----------------YKRFPIDKRPYIIALTANAMQGDRERAIAAGMQDYVSKPIRPAT 784

Query: 993  LKECLEQYF 1001
            +   L++ +
Sbjct: 785  IGAALKKAY 793



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 110/185 (59%), Gaps = 7/185 (3%)

Query: 327 GMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPL 385
            +D  ++V++  +    + + A+ KA +  L       E   +AK   LA+MSHEIR+P+
Sbjct: 249 ALDTYEEVKQETEQLYQQLDQAIAKANQAALE-----AELANQAKSSFLASMSHEIRTPM 303

Query: 386 TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445
             V+ +  +L  T++D +QR  L  + +SGD +L LINDILD SK+ES  M+LE     P
Sbjct: 304 NAVIGLTGVLLETQIDDDQRDYLQTIRASGDSLLVLINDILDFSKIESDKMELEERPIDP 363

Query: 446 REVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK 504
           R  V+  L+  A  +  K L L  + ++D+P  ++GD  R+RQIL NLI NAIKFT +G+
Sbjct: 364 RCCVEEALELLAEKASSKGLELCYEASEDIPFGILGDATRLRQILVNLIGNAIKFTEKGQ 423

Query: 505 VGIKL 509
           + + L
Sbjct: 424 IEVLL 428


>gi|218460506|ref|ZP_03500597.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli Kim 5]
          Length = 590

 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 118/200 (59%), Gaps = 12/200 (6%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           +  VF  +GE     ++ MD T  V   +    L  ++   K++E EL + +   E   R
Sbjct: 138 ISTVFHVAGE----RWVNMDAT--VSTGQHWVALFTDVTELKSREEELRELLSRAEAADR 191

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD 
Sbjct: 192 AKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFIDIIVKSGNALLTIINDILDF 251

Query: 429 SKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           SK+++G M L  A F   E V+ V   L + AA  +K + L G  A D+P  VIGD  R 
Sbjct: 252 SKIDAGQMTLRKAAFDITEAVEDVATLLSSHAA--EKNIELLGRAAPDLPAAVIGDAGRF 309

Query: 486 RQILTNLISNAIKFTPEGKV 505
           RQI+TNL+ NA+KFT  G V
Sbjct: 310 RQIVTNLVGNAVKFTERGHV 329



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 47/73 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP   L ++F K+ QV A   R++ GTGLGLAI   LV+L GG + V S+   
Sbjct: 349 IEDTGIGIPHEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVESQWGK 408

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 409 GSVFTVKLPFAVA 421


>gi|425899726|ref|ZP_18876317.1| sensor histidine kinase/response regulator [Pseudomonas
           chlororaphis subsp. aureofaciens 30-84]
 gi|397889329|gb|EJL05811.1| sensor histidine kinase/response regulator [Pseudomonas
           chlororaphis subsp. aureofaciens 30-84]
          Length = 940

 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 161/327 (49%), Gaps = 78/327 (23%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L +   + +    AK + LATMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 432 DISARKQVEAALEEARQMADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTQLDTQQ 491

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
           R  L  +  S   +LQLI D+LD+SK+E+G + LE  +F P ++V  ++Q  +AA+  K 
Sbjct: 492 RDYLRAIECSSSTLLQLICDVLDVSKIEAGQLALELNEFSPLDLVHELIQGYSAAASNKG 551

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLK 523
           L+L   +   +P  +IGDV RIRQIL+NL++NA+KFT  G++ +++ ++     +++G  
Sbjct: 552 LLLYSCVDPQIPERLIGDVTRIRQILSNLLNNAVKFTDLGRIVLRVSLL-----SRDG-- 604

Query: 524 QKSKAYQSATDAVK--EEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNS 581
           ++S      +D  K   + HQP       Q G                         GN 
Sbjct: 605 ERSSILWQVSDTGKGIAQDHQPLIFEPFYQTG-------------------------GN- 638

Query: 582 MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
                 A V     V  TG+G+P                              IC++L +
Sbjct: 639 ------ANV-----VAGTGLGLP------------------------------ICQRLTQ 657

Query: 642 LMGGRLTVTSKVHCGSTFTFILPYQVS 668
           LM G L + S++  GS+F+  LP + +
Sbjct: 658 LMNGSLRMVSELGLGSSFSLTLPLEAA 684



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 26/140 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
             +L+ EDN IN ++ +  +++LG S+++ +NG EA+     + +DL+L DV MP+M+G +
Sbjct: 819  NVLVAEDNVINQLILRDQLEELGCSVELASNGEEALSMWDPERFDLVLTDVNMPMMNGYE 878

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
              + +R    T                          +PII  TANA+    E+C A GM
Sbjct: 879  LAKELRRRGCT--------------------------VPIIGATANAMRGEEEQCLAAGM 912

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            +  + KP   + L   L  Y
Sbjct: 913  NHCLVKPFALRALFNYLAPY 932


>gi|421590989|ref|ZP_16035913.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium sp. Pop5]
 gi|403703640|gb|EJZ19820.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium sp. Pop5]
          Length = 1021

 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 119/199 (59%), Gaps = 10/199 (5%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           +  VF   GE     ++ MD T  V + +    L  ++   K++E EL + +   E   R
Sbjct: 430 ISAVFHIGGE----RWVNMDAT--VSRGQHWVALFTDVTELKSREEELRELLSRAEAADR 483

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD 
Sbjct: 484 AKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFIDIIVKSGNALLTIINDILDF 543

Query: 429 SKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           SK+++G MKL  A F   E V+ V  L ++ A+ + I +L    A D+P  VIGD  R R
Sbjct: 544 SKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLV-RAAPDLPAAVIGDAGRFR 602

Query: 487 QILTNLISNAIKFTPEGKV 505
           QI+TNL+ NA+KFT  G V
Sbjct: 603 QIVTNLVGNAVKFTERGHV 621



 Score = 93.6 bits (231), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 22/149 (14%)

Query: 853  ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVC 912
            +T+      +L+ EDN++N +V   +++  G S  VVNNG EAV A Q     +I+MDV 
Sbjct: 883  QTRAAEFVDVLVAEDNEVNQIVFTQILQGTGLSFLVVNNGQEAVAAWQSHTPRIIMMDVS 942

Query: 913  MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            MPVM+G +ATR IR  E                          +R+PII +TA+AL    
Sbjct: 943  MPVMNGHEATRTIRKLE----------------------QGQGRRVPIIGVTAHALESDR 980

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            + C   GMD ++SKP++ + L+E + Q+ 
Sbjct: 981  DLCLDAGMDDYMSKPISPELLEEKIRQWL 1009



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 47/73 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP   L ++F K+ QV A   R++ GTGLGLAI   LV+L GG L V S+   
Sbjct: 641 IEDTGIGIPSEKLASVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLDVDSEWGK 700

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 701 GSVFTVNLPFAVA 713


>gi|152994636|ref|YP_001339471.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
            MWYL1]
 gi|150835560|gb|ABR69536.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
            MWYL1]
          Length = 1057

 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 183/420 (43%), Gaps = 72/420 (17%)

Query: 589  TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            +V +R  + D+GIGI +     LF+++ Q      RK+GG+GLGLAI K++++ M G + 
Sbjct: 704  SVILRIVIEDSGIGISKENQSHLFQRFKQADGSTTRKFGGSGLGLAISKEIIQAMDGEIG 763

Query: 649  VTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSL 708
            + S    GS+F F +P  V    E +    D ++ A + +                   L
Sbjct: 764  LNSVEGQGSSFWFRIPLSVVSTAEQAPIVTDGTEQAVRVT-------------------L 804

Query: 709  FSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETL 768
              +N T R          + +A         S+    N     T  L D+  +       
Sbjct: 805  IYANKTGRE---------YVAALL------DSFGVIYNTYDSVTGALADSEWIGNCILLD 849

Query: 769  SEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNE-- 826
            S+  S+ +   E E   + +  KQ  ++             S  + ++E    S T    
Sbjct: 850  SDVVSAVTEVSELEVFCKKNAIKQVLLQ-----------GRSSMDFDKEKYDASLTKPVF 898

Query: 827  PQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP----KILLVEDNKINVMVAKSMMKQL 882
             Q + ++ E   ++ +  S  +A+  E  P  +P    K+LL EDN  N +VA+ ++   
Sbjct: 899  QQPLLDVLENLKQLVEGESVMAAKDVEKTPDGRPIFTAKVLLAEDNLTNQVVARGLLNLY 958

Query: 883  GHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGI 942
            G  + V  NG +AV   Q   +D+I MD  MPVMDG +ATR IR F D            
Sbjct: 959  GVEVVVAENGQKAVEQAQSTQFDMIFMDCQMPVMDGYEATRTIRQFTDAQT--------- 1009

Query: 943  EQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                PS         + I+A++ANA+    +ECFA GM+  ++KP++  KL   L ++ P
Sbjct: 1010 ----PSD--------VAIVALSANAMKGDEDECFAAGMNDHIAKPISQDKLIAILTKWLP 1057



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 108/187 (57%), Gaps = 4/187 (2%)

Query: 329 DVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTG 387
           +V ++VR R +  +L  E    KA E E +K     +E  RAK + LA MSHEIR+PL G
Sbjct: 515 EVENRVRLRTRDLQLANEHL--KASELEQSKAKEEAQEANRAKSEFLANMSHEIRTPLNG 572

Query: 388 VVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447
           V+    +L NTKL  +Q  L  +   S + +L +INDILDLSK+E G + L+  +F  R 
Sbjct: 573 VIGCLSLLMNTKLQPDQSNLAKISQQSAESLLDIINDILDLSKIEMGTLVLDKQEFELRA 632

Query: 448 VVKHVLQTAAASLQKILMLEGDIADDVP-IEVIGDVLRIRQILTNLISNAIKFTPEGKVG 506
           +++ V        ++  ++       +P + + GD LRI+Q+L NL+ NA+KFT EG+V 
Sbjct: 633 LIEEVTNIFVLKAEEKGIVLNSPTTPIPNVTLFGDRLRIKQVLVNLMGNAVKFTQEGEVA 692

Query: 507 IKLYVVP 513
           ++  + P
Sbjct: 693 LRFAIEP 699


>gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
 gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
          Length = 837

 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 167/371 (45%), Gaps = 90/371 (24%)

Query: 369 RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           RAK Q LA MSHEIR+P+ G++ M E+L  T+L  +Q + L ++ +S D ++ +INDILD
Sbjct: 172 RAKGQFLANMSHEIRTPMNGIIGMTELLLETELAPQQHEYLQMIKTSADCLVSVINDILD 231

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
            SK+E+G +++E+  F+ R                              E +GD+++   
Sbjct: 232 FSKIEAGKLEIESIPFQLR------------------------------ENLGDLMK--- 258

Query: 488 ILTNLISNAIKFTPEGKVGIKL--YVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
                    + F   GK G++L  +V P+ P+   G     +  Q   + V         
Sbjct: 259 --------TLAFRAHGK-GLELVAHVRPDVPWRMTG--DPGRLRQILVNLVG-------- 299

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
                 N     +HGE              +     +DE  E    +   V DTGIGIPE
Sbjct: 300 ------NAIKFTEHGE--------------IVVRVDIDEISETDALLHFTVCDTGIGIPE 339

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFI--L 663
            AL  +F  + Q      RK+GGTGLGL+IC +LVELM G++ V S+VH GS F F   L
Sbjct: 340 AALQKIFAAFEQADGTTTRKFGGTGLGLSICSRLVELMHGKIWVESQVHVGSQFHFTAQL 399

Query: 664 PYQVSPIEENSDDPDDLSDM----ADQDSVTDDVTAGF---FQFQPRTLG------SLFS 710
               +  +E    PDD   +     D +    ++ A     +  QP  +G      SL++
Sbjct: 400 GIDANSYDERHIPPDDCRQLNVLIVDDNDTCGEIIAEMLANWGMQPTVIGGAVEAISLYA 459

Query: 711 SNGTSRSKKLL 721
              TS   +LL
Sbjct: 460 EEVTSPKFQLL 470



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 77/139 (55%), Gaps = 22/139 (15%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +ILL EDN +N  +A  ++++ GH + V ++G +AV A +   +DL+LMDV MP++DG+ 
Sbjct: 565 RILLAEDNLVNQKLAVLLLEKRGHLVTVASDGKQAVEAWKEGGFDLVLMDVQMPILDGMA 624

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           AT  IR  E                      +    RIPIIAMTA+A+    E C   GM
Sbjct: 625 ATTEIRRHE----------------------TRTALRIPIIAMTAHAMKGDRERCLEAGM 662

Query: 981 DSFVSKPVTFQKLKECLEQ 999
           D +V+KP+  Q L + +++
Sbjct: 663 DGYVTKPINAQALYDAIDE 681


>gi|116253334|ref|YP_769172.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257982|emb|CAK09080.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 1118

 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 117/195 (60%), Gaps = 6/195 (3%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
           G  ++ MD T  V K +    L  ++   K +E EL + +   E   RAK + LA MSHE
Sbjct: 537 GERWVNMDAT--VSKGQHWVALFTDVTELKGREEELRQLLSRAEAADRAKSEFLANMSHE 594

Query: 381 IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
           IR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD SK+++G MKL  
Sbjct: 595 IRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRK 654

Query: 441 AKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
           A F   E V+ V  L ++ A+ + I +L    A D+P  VIGD  R RQI+TNL+ NA+K
Sbjct: 655 AAFDITEAVEDVATLLSSHAAEKNIELLV-RAAPDLPAAVIGDAGRFRQIVTNLVGNAVK 713

Query: 499 FTPEGKVGIKLYVVP 513
           FT  G V + +   P
Sbjct: 714 FTERGHVFVDVGFQP 728



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 22/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN++N +V   +++  G S  VV+NG EAV A +     +I+MDV MPVM+G +A
Sbjct: 989  VLVAEDNEVNQIVFTQILQGTGLSFLVVDNGEEAVAAWERHTPRIIMMDVSMPVMNGHQA 1048

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T+ IR  E                           R+PII +TA+AL    E C   GMD
Sbjct: 1049 TQTIRERE----------------------KGQGHRVPIIGVTAHALESDRELCLDAGMD 1086

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP++ + L+E + Q+ 
Sbjct: 1087 DYMSKPISPELLEEKIRQWL 1106



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 47/73 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP   L ++F K+ QV A   R++ GTGLGLAI   LV+L GG L V S+   
Sbjct: 740 IEDTGIGIPSEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGK 799

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 800 GSVFTINLPFPVA 812


>gi|424871849|ref|ZP_18295511.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
 gi|393167550|gb|EJC67597.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
          Length = 1118

 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 118/195 (60%), Gaps = 6/195 (3%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
           G  ++ MD T  V K +    L  ++   K++E EL + +   E   RAK + LA MSHE
Sbjct: 537 GERWVNMDAT--VSKGQHWVALFTDVTELKSREEELRQLLSRAEAADRAKSEFLANMSHE 594

Query: 381 IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
           IR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD SK+++G MKL  
Sbjct: 595 IRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRK 654

Query: 441 AKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
           A F   E V+ V  L ++ A+ + I +L    A D+P  VIGD  R RQI+TNL+ NA+K
Sbjct: 655 AAFDITEAVEDVATLLSSHAAEKNIELLV-RAAPDLPAAVIGDAGRFRQIVTNLVGNAVK 713

Query: 499 FTPEGKVGIKLYVVP 513
           FT  G V + +   P
Sbjct: 714 FTERGHVFVDVGFQP 728



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 30/187 (16%)

Query: 817  EMIQTSKTNEPQK--ICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMV 874
            E+++ S+  +  +  I  +Q      +++   + A VP+ +      +L+ EDN++N +V
Sbjct: 948  EVVRASRVKQASEAEIARLQ------TEAAVPAPASVPQKRAAEFVDVLVAEDNEVNQIV 1001

Query: 875  AKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNW 934
               +++    S  VV+NG EAV A +     +I+MDV MPVM+G +AT++IR  E     
Sbjct: 1002 FTQILQGTDLSFLVVDNGEEAVAAWERHTPRIIMMDVSMPVMNGHQATQMIRERE----- 1056

Query: 935  DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLK 994
                                  R+PII +TA+AL    E C   GMD ++SKP++ + L+
Sbjct: 1057 -----------------KGQGHRVPIIGVTAHALESDRELCLDAGMDDYMSKPISPELLE 1099

Query: 995  ECLEQYF 1001
            E + Q+ 
Sbjct: 1100 EKIRQWL 1106



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 47/73 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP   L ++F K+ QV A   R++ GTGLGLAI   LV+L GG L V S+   
Sbjct: 740 IEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGK 799

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 800 GSVFTINLPFAVA 812


>gi|254444190|ref|ZP_05057666.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258498|gb|EDY82806.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 664

 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 178/428 (41%), Gaps = 82/428 (19%)

Query: 572 PGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGL 631
           P   V  G S  E       +R +V+D+GIGI + A   LF+ + Q  +   R YGGTGL
Sbjct: 287 PRGEVGLGISRYEAKPGEFMLRFEVWDSGIGISKEAQMRLFKPFSQADSSTTRIYGGTGL 346

Query: 632 GLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTD 691
           GLAIC++LV  MGG + V S+   GS F F +  +    E+                   
Sbjct: 347 GLAICRKLVFAMGGEIGVDSEAGLGSRFWFTVACRDKEAEKRR----------------- 389

Query: 692 DVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKE 751
                   +QP+  GS         + +     +G   A ++            N R + 
Sbjct: 390 -------AYQPKVCGSFLCVLVALENPR-----VGGLVARELE---------HRNARVEV 428

Query: 752 TAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNP-----AT 806
            +   DA     +A+  +EP + F       +E     G Q H     W   P     ++
Sbjct: 429 VSSTADA-----IAKLKTEPGNRFQLLIV--DEFIWREGVQDH-----WSGGPLAIAYSS 476

Query: 807 ESTSHSEANREMIQTSKTNEPQKICEMQEK--PDRISQSPSS----SSAEVPETKPKPKP 860
              S ++  +  +   +   P +I ++ ++  P  +     S    +S EV    P P  
Sbjct: 477 HGNSKADGAKGRVHLCRPLRPSQIDKLLDRVFPANVEGGVQSDSQPNSGEVASQSPLPG- 535

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           KILLVED+ +N  +A  +M +LG+  D   +G+EA+      +YDLIL+D CMP MDG +
Sbjct: 536 KILLVEDHAVNRRLAVKLMSKLGYECDQAVDGLEAMECCIENDYDLILLDCCMPRMDGYE 595

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
             R  R  E                    G     +   IIA+TANAL    E C   GM
Sbjct: 596 FVREFRKLE--------------------GVRKLERPTRIIALTANALQGDRERCLEAGM 635

Query: 981 DSFVSKPV 988
           D +++KP+
Sbjct: 636 DDYLTKPL 643



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 103/160 (64%), Gaps = 6/160 (3%)

Query: 356 ELNKTIHITE----ETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGV 410
           E NK + I      + +R+K + LA MSHEIR+PL G++ M  +L ++KLD EQ++L   
Sbjct: 136 ETNKQLAIARDQSLQAVRSKSEFLAVMSHEIRTPLNGILGMLSLLVDSKLDDEQQELADT 195

Query: 411 MISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKI-LMLEGD 469
              S + +L ++NDILD S+++SG M LE   F  RE+ + VL   A + Q+  L +  D
Sbjct: 196 ANDSAEALLLILNDILDFSRLDSGKMALEEQHFNVRELAESVLTLMAENAQESDLEVICD 255

Query: 470 IADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           I  DVP+ +  DV RIRQILTN+I NA+KFTP G+VG+ +
Sbjct: 256 IDLDVPLSICSDVGRIRQILTNMIGNAVKFTPRGEVGLGI 295


>gi|418300342|ref|ZP_12912168.1| two component sensor kinase/response regulator hybrid [Agrobacterium
            tumefaciens CCNWGS0286]
 gi|355533755|gb|EHH03075.1| two component sensor kinase/response regulator hybrid [Agrobacterium
            tumefaciens CCNWGS0286]
          Length = 1224

 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 193/432 (44%), Gaps = 58/432 (13%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            EA + +R  V D+GIGIP + L T+F K+ QV     R++ GTGLGLAI   LV L  G 
Sbjct: 822  EAILSLR--VEDSGIGIPADKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGA 879

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENSDDP------DDLSDMADQDSVTDDVTAGFFQF 700
            + V S V  GS F   +P+QV+  E   D P      DD+  +   D   +DV       
Sbjct: 880  INVVSDVGKGSAFEVNIPFQVT--ERQRDLPLLSVAIDDIRVLVIDD---NDVNRRILTE 934

Query: 701  QPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETS----YSFPSNN------RQK 750
            Q R+ G     +G +      P+ I         GFS  +    Y  P  N      R +
Sbjct: 935  QLRSWGV----DGHAVEDG--PSGIAVLQEAASLGFSLDAIILDYHMPVMNGLDVVERIR 988

Query: 751  ETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTS 810
              A  +D   V   +  +   E+ F+      +  + +R +          ++   +   
Sbjct: 989  ADARFDDIAIVFLTSMDVVGDETLFTDLNVQAHLMKPARARLLRSTLFDVVRDVRLKRAR 1048

Query: 811  HSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPK-PKILLVEDNK 869
             + + RE  +      P+      E+  R   SP+     VP T+ +P    +L+ EDN 
Sbjct: 1049 QAPSPRETGRGEGAIRPEN--GAVERKQRADISPA-----VP-TRHRPSLVDVLVAEDND 1100

Query: 870  INVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFE 929
            +N +V   +++Q G    +V NG +AV A Q  N  +ILMDV MPVM+G +AT+ IR+ E
Sbjct: 1101 VNQIVFTQILQQAGLRFLIVGNGKKAVQAWQENNPAIILMDVSMPVMNGHQATQAIRAAE 1160

Query: 930  DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVT 989
                            M + G     + +PII +TA+      E C   GMD ++SKP++
Sbjct: 1161 ---------------RMAADG-----RHVPIIGVTAHTQEADRELCLEAGMDDYLSKPIS 1200

Query: 990  FQKLKECLEQYF 1001
             + L++ + Q+ 
Sbjct: 1201 PETLEDKIAQWL 1212



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 105/161 (65%), Gaps = 2/161 (1%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL + +   E   RAK + LA MSHEIR+P+ GV+ MAE+L+ + LD  Q+    
Sbjct: 653 KLREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTD 712

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEG 468
           +++ SG+ +L +INDILD SK+E+G MKL +  F P E V+ V+   ++A+L+K + L  
Sbjct: 713 IIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKDIELIV 772

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            I   V  +VIGD  R RQI+TN++ NA+KFT  G V ++L
Sbjct: 773 RIDASVFGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVEL 813


>gi|399008938|ref|ZP_10711389.1| signal transduction histidine kinase [Pseudomonas sp. GM17]
 gi|398114449|gb|EJM04270.1| signal transduction histidine kinase [Pseudomonas sp. GM17]
          Length = 940

 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 161/327 (49%), Gaps = 78/327 (23%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L +   + +    AK + LATMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 432 DISARKQVEAALEEARQMADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTQLDTQQ 491

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
           R  L  +  S   +LQLI D+LD+SK+E+G + LE  +F P ++V  ++Q  +AA+  K 
Sbjct: 492 RDYLRAIECSSSTLLQLICDVLDVSKIEAGQLALELNEFSPLDLVHELIQGYSAAASNKG 551

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLK 523
           L+L   +   +P  +IGDV RIRQIL+NL++NA+KFT  G++ +++ ++     +++G  
Sbjct: 552 LLLYSCVDPQIPERLIGDVTRIRQILSNLLNNAVKFTDLGRIVLRVNLL-----SRDG-- 604

Query: 524 QKSKAYQSATDAVK--EEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNS 581
           ++S      +D  K   + HQP       Q G                         GN 
Sbjct: 605 ERSNILWQVSDTGKGIAQDHQPLIFEPFYQTG-------------------------GN- 638

Query: 582 MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
                 A V     V  TG+G+P                              IC++L +
Sbjct: 639 ------ANV-----VAGTGLGLP------------------------------ICQRLTQ 657

Query: 642 LMGGRLTVTSKVHCGSTFTFILPYQVS 668
           LM G L + S++  GS+F+  LP + +
Sbjct: 658 LMNGSLRMVSELGLGSSFSLTLPLEAA 684



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 26/140 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
             +L+ EDN IN ++ +  +++LG S+++ +NG EA+     + +DL+L DV MP+M+G +
Sbjct: 819  NVLVAEDNVINQLILRDQLEELGCSVELASNGEEALSIWNPERFDLVLTDVNMPMMNGYE 878

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
              + +R    T                          +PII  TANA+    E+C A GM
Sbjct: 879  LAKELRRRGCT--------------------------VPIIGATANAMRGEEEQCLAAGM 912

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            +  + KP   + L   L  Y
Sbjct: 913  NHCLVKPFALRALFNYLAPY 932


>gi|398348886|ref|ZP_10533589.1| multi-sensor hybrid histidine kinase [Leptospira broomii str. 5399]
          Length = 847

 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 192/424 (45%), Gaps = 84/424 (19%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           IR  V DTGIGIP+     LF  + QV     RKYGGTGLGL+I  +L+++MGGR+ + S
Sbjct: 485 IRFSVRDTGIGIPKEKQKQLFNPFYQVDTSSTRKYGGTGLGLSISYRLIKMMGGRIWLES 544

Query: 652 KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDS---VTDDVTAGF--FQFQPRTLG 706
            V+ G+TF+     Q   +E+ +    +++    ++    + DD          Q + LG
Sbjct: 545 DVNKGTTFS--FEIQAESVEQKNQVIPNINYPGLENRKILIIDDNATNLRILSHQLQILG 602

Query: 707 SL-FSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNN---------RQKETAPL- 755
            + FSS+    +  LL   I       +   +   Y+   NN         R+    PL 
Sbjct: 603 LMTFSSSSKEEALSLLDLGI-------LPELAILDYNLAGNNGVQIAQELRRRNFLFPLI 655

Query: 756 EDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEAN 815
             + S+ ++ E     +       +P  + E+ +     +  T   +  A  S+S+ E  
Sbjct: 656 LLSSSILDIKEREIADQLFLRQLSKPVKKKELEQ-IVTEILITGTEKGKANRSSSYLEKQ 714

Query: 816 REMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVA 875
           ++++Q++   E                                   +L+ EDN+IN+ +A
Sbjct: 715 KDLLQSTYPFE-----------------------------------VLIAEDNEINLSLA 739

Query: 876 KSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
           K ++++LG+S  V  NG + ++ ++   +D++LMDV MP MDG++AT++IR+      W 
Sbjct: 740 KRILQKLGYSPIVATNGKQVLNRLREAKFDVVLMDVHMPEMDGIQATQVIRN-----TWP 794

Query: 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKE 995
                  +   P            IIAMTA A+    E C   GM+ +VSKP+ F++L  
Sbjct: 795 -------QNEQPY-----------IIAMTAAAMQGDREICLRAGMNDYVSKPIVFEELIH 836

Query: 996 CLEQ 999
            L +
Sbjct: 837 ALRK 840



 Score =  107 bits (267), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 340 MAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNT 398
           +  L  +I V+K  E +L K     E+  +AK + LA MSHEIR+P+ GV+ M E+L ++
Sbjct: 302 ICALFTDITVRKNYEDDLKKAKEEAEKANQAKSEFLAMMSHEIRTPMNGVIGMTELLLDS 361

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AA 457
            L  E+R+   ++  SG+ +L +INDILD SK+ESG ++LE+ +F   E  +  L    +
Sbjct: 362 DLTGEKREYAEIIQKSGESLLSIINDILDYSKIESGTLRLESKEFSILETAEETLDLFRS 421

Query: 458 ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           ++ +K + L   I  +VP  +IGD LR+RQ+L NL  N++KFT +G+V
Sbjct: 422 SAAEKGIDLICHIDPNVPDIIIGDKLRLRQVLINLFGNSLKFTEKGEV 469


>gi|386817642|ref|ZP_10104860.1| histidine kinase [Thiothrix nivea DSM 5205]
 gi|386422218|gb|EIJ36053.1| histidine kinase [Thiothrix nivea DSM 5205]
          Length = 602

 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 155/319 (48%), Gaps = 82/319 (25%)

Query: 349 VQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQL 407
           + KAK  +     H+ EE ++ K + LATMSHEIR+P+ GV+ M  +L NT + ++Q + 
Sbjct: 75  INKAKTAQ-----HVAEEAVKTKARFLATMSHEIRTPMNGVIGMTRLLMNTPMSKKQSEF 129

Query: 408 LGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA-AASLQKILML 466
           +  +  SG+ +L +IND+LD SK+E+G + L+   F  R  ++ +L    A +L+K L L
Sbjct: 130 VESIHLSGEHLLTVINDVLDFSKIEAGKLDLKREAFDLRAAIEDILNLLHAKALEKNLEL 189

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKS 526
              +   +P  + GD++R+RQILTNLI NAIKFT  G+V I  +V+             S
Sbjct: 190 AFAVGSSIPDFIEGDMVRLRQILTNLIGNAIKFTDSGEVTI--FVI-------------S 234

Query: 527 KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGY--QDHKHDDDPGTPVSHGNSMDE 584
           +++                             HG+ Y  +   +D  PG P    N +D 
Sbjct: 235 RSH-----------------------------HGDEYELEFQINDTGPGIP---PNRLDS 262

Query: 585 DLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMG 644
             E                          ++ +V     +++ GTGLGLAI + L+++M 
Sbjct: 263 IFE--------------------------QFSRVDEKQVQRHEGTGLGLAISRHLIDMMD 296

Query: 645 GRLTVTSKVHCGSTFTFIL 663
           GR+ V S +  GS F F +
Sbjct: 297 GRIWVESTLGIGSRFHFTI 315



 Score = 99.4 bits (246), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 97/164 (59%), Gaps = 30/164 (18%)

Query: 845  SSSSAEVPE-TKPKPKPK----ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
            +S +A  PE ++ KP  +    ILL EDN IN +VA +++++L ++ DVV NG+ A+ A+
Sbjct: 458  ASLAATRPECSRIKPGERLPLAILLAEDNPINQVVATAILEELAYTADVVENGLLALRAL 517

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
            Q ++YD+I MD+ MP +DGL+ATR IR+                  +P        +R P
Sbjct: 518  QQRHYDVIFMDMQMPELDGLEATRRIRA----------------NFLP--------ERQP 553

Query: 960  -IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             IIAMTANA++   +EC   GM+ ++SKP+  + +   L++ FP
Sbjct: 554  VIIAMTANAMAGDRQECLNAGMNDYISKPILPETVAAALQRCFP 597


>gi|119485163|ref|ZP_01619548.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457391|gb|EAW38516.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 876

 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 146/302 (48%), Gaps = 52/302 (17%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDL---------VLQLIN 423
            LA MSHE+R+PL  ++  +E+L      RE  Q +G+    GDL         +L LIN
Sbjct: 608 FLANMSHELRTPLNAILGYSELL------REDAQDMGLEEFVGDLKNIHVAGHHLLDLIN 661

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQK-ILMLEGDIADDVPIEVIGDV 482
           DILD SK+E+G M      +    ++  V  T A   +K     + ++AD++ I +  D+
Sbjct: 662 DILDFSKIEAGRMNFHLETYTVATLLWEVETTIAPLAEKNTNTFKIEVADNIDI-IHTDI 720

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQ 542
            ++RQ L NL+SNA KFT +G V +K+                  + +++ D   E    
Sbjct: 721 TKVRQSLLNLLSNACKFTEQGLVTLKV------------------STETSPDPTTELPTV 762

Query: 543 PKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIG 602
           P            D  H    +D +  D P  P       + + +   ++   V DTGIG
Sbjct: 763 PPP----------DLPHSTHQRDSQITDFPYAP-------EANTKPITYVIFQVIDTGIG 805

Query: 603 IPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFI 662
           +    + T+F  + Q      RKYGGTGLGL I ++L ELMGG L+VTSK+  GSTF   
Sbjct: 806 MSPRQITTVFNPFTQADESTTRKYGGTGLGLTITRKLCELMGGELSVTSKLGQGSTFIMR 865

Query: 663 LP 664
           LP
Sbjct: 866 LP 867


>gi|163795672|ref|ZP_02189637.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199]
 gi|159178968|gb|EDP63503.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199]
          Length = 1188

 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 126/208 (60%), Gaps = 11/208 (5%)

Query: 315 SKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT----EETMRA 370
           +  G ++G+     D+T++VR    +   R+E+  Q     +L + I       EE   A
Sbjct: 615 TSDGGSVGIRS---DITERVRTENDLRAARDELEEQAQSLRDLAEQIDAARLRAEEAGAA 671

Query: 371 K-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLS 429
           K + LA MSHE+R+P+TG++ M E+ S T+L +EQ+  + +M  S + +L L+NDILD S
Sbjct: 672 KSRFLAVMSHELRTPMTGLLGMIELASRTELSKEQQGYVRIMRDSAETLLALLNDILDFS 731

Query: 430 KVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
           K+E+G ++LE   F P +++  V  L  A AS  K L+LE D+   VP  V GD LR++Q
Sbjct: 732 KLEAGKVQLEEITFAPEQIIGDVFGLFQAQAS-AKGLVLEADLRPSVPAWVRGDPLRVKQ 790

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVVPEP 515
           IL+NLISNAIKFT +G++ ++L     P
Sbjct: 791 ILSNLISNAIKFTTKGRITVRLGATEGP 818



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 23/144 (15%)

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
            P    +ILL EDN +N M+   ++ Q GH +D V +G +A+ A     YDLILMD+ MPV
Sbjct: 917  PTLPRRILLAEDNDVNRMLVSKVLGQSGHQVDEVADGQQALQAATRVTYDLILMDMQMPV 976

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            MDG++ATR IR                   +P + ++     +PI+A+TA+AL E     
Sbjct: 977  MDGVEATRAIRQ------------------LPGAAAT-----VPIVALTADALPEHRHIY 1013

Query: 976  FANGMDSFVSKPVTFQKLKECLEQ 999
            F  G+D  ++KPV ++ L   + +
Sbjct: 1014 FDAGIDELLTKPVDWRLLDRTIAR 1037



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 5/100 (5%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V ++ +V DTG GI    L  LF+ + Q  +   R++GGTGLGLAI ++L E MGG +TV
Sbjct: 822 VRLQGEVIDTGQGIAAGVLEHLFQAFEQGDSSTTRQFGGTGLGLAISRRLAEGMGGSITV 881

Query: 650 TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSV 689
            S++  GS F F +  +VS +    D       +AD+D +
Sbjct: 882 ESELGRGSVFRFAVLVRVSTVPAVED-----QRLADEDEL 916


>gi|192359994|ref|YP_001980883.1| MmoS protein [Cellvibrio japonicus Ueda107]
 gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107]
          Length = 803

 Score =  133 bits (334), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 121/419 (28%), Positives = 178/419 (42%), Gaps = 64/419 (15%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E  + +R  V D+GIGI  N+   LF  + Q  A   RKYGGTGLGLAICK L ELMGGR
Sbjct: 428 EGRLMLRFVVQDSGIGIDPNSASNLFDSFNQADASTTRKYGGTGLGLAICKSLAELMGGR 487

Query: 647 LTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRT-- 704
           + V S    G+ F F   + V  +   S  PD    +  +  +  + +A    F  R   
Sbjct: 488 IGVKSAKGEGAQFWFTAQFDVQELASPSLTPD--PTLKGKRLLMVETSAPLVTFTQRYCD 545

Query: 705 -LGSLFSSNGTSR-SKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVA 762
             G L  +  +++ +  LL + +    A +   F    YS P     +    L DA    
Sbjct: 546 HWGLLLETAFSAKQAVALLKHGL---HAGEPFDFVAFDYSLPDATGFELAQWLRDAPDFT 602

Query: 763 EVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTS 822
           E+      P   FS      ++  + R     +   +  + P +    +    RE+I   
Sbjct: 603 EL------PVFMFSGGDVYHDQAVMQR-----LAIHTVLRKPISVKALY----RELIALL 647

Query: 823 KTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNK-INVMVAKSMMKQ 881
                               +P+   AE    + K     +LV ++  +N MV K ++ +
Sbjct: 648 GH----------------EAAPTVLPAEKVLARDKFAHLQVLVAEDNPVNRMVIKGLLGK 691

Query: 882 LGHSIDVVNNGVEAVHAVQ--CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939
           LG       NG EAV  V    Q +DLILMD  MP MDG +ATR IR  E      A   
Sbjct: 692 LGIQPVFAENGREAVDLVHHGAQRFDLILMDCEMPEMDGFEATRNIRELERRSGRPA--- 748

Query: 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
                             +P++A+TA+AL E  E  FA+GM+ +++KP+TF  L    +
Sbjct: 749 ------------------VPVVALTAHALQEHREAVFASGMNYYLAKPITFDSLYAAFD 789



 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 117/192 (60%), Gaps = 9/192 (4%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETEL--NKTIHITEETMRAK-QMLATMS 378
            +N+M   + D + +R  +     E+A+   KE +L   +  +  E+  RAK Q LATMS
Sbjct: 232 AINHMRETLLDDIEQRHAI-----ELALLSEKEEKLETRRQKNAAEDASRAKSQFLATMS 286

Query: 379 HEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKL 438
           HEIR+P+ GV+ M ++L +T LD  Q+  + V+  SG+ +L +INDILD SK+E+G M+L
Sbjct: 287 HEIRTPMNGVIGMLDMLRDTPLDENQKHYIDVIHRSGETLLSIINDILDYSKIEAGKMQL 346

Query: 439 EAAKFRPREVVKHVLQTAAASLQKI-LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAI 497
           E   F   ++V++ +Q   A+  K  + L G +  DVP  + GD  R+RQI+ NL+ NA 
Sbjct: 347 EEMVFELDDLVENCIQLFGATANKRNIELFGGLNPDVPRRLRGDPTRLRQIIINLLGNAF 406

Query: 498 KFTPEGKVGIKL 509
           KFT EG V +++
Sbjct: 407 KFTEEGFVSLEV 418


>gi|334120096|ref|ZP_08494179.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
 gi|333457278|gb|EGK85903.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
          Length = 1232

 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 182/354 (51%), Gaps = 25/354 (7%)

Query: 317 SGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLA 375
           S E   +  + + +T  +++     + + E+A +K  ET L K +   +   RAK + L+
Sbjct: 644 SSEIESLQQISVQLTIAIQQSTLFEQAKTELAERKLAETALQKAVVAADTANRAKSEFLS 703

Query: 376 TMSHEIRSPLTGVVSMAEIL-SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           +MSHE+R+PL  ++  ++++  ++ L+ +  Q L ++  +G+ +L LINDIL++SK+E+G
Sbjct: 704 SMSHELRTPLNAILGFSQVMVRDSSLNNQHLQHLEIINRAGEHLLALINDILEMSKIEAG 763

Query: 435 VMKLEAAKF---RPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
             +L  + F   R  + ++ + +  A S  K L L  ++ D VP  V GD  ++RQIL N
Sbjct: 764 RSQLNESSFNLMRLLKTLEEMFRLKAKS--KKLQLNLEVGDGVPDFVSGDEGKLRQILIN 821

Query: 492 LISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQ 551
           L+ NAIKFT  G V +++    E     E   + S        A  E       +TA+ Q
Sbjct: 822 LVGNAIKFTEMGSVTLRVKKKVEKSLGAET-AEFSDTQTKLVGAGCEHSESLAVETAAIQ 880

Query: 552 NGFHDKKHG--EGYQDHKHDDDPGTPVSHGNSMD-EDLEATVW-IRCDVYDTGIGIPENA 607
                +K G   G+       +    ++H + +D  DL   V  ++ ++ DTG+GI    
Sbjct: 881 -----RKPGWCTGF-------NQSESLAHCDCVDAHDLHPEVLRLQFEIEDTGLGIAAEE 928

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           +  LF  + Q      +   GTGLGL I ++ V++MGG +TV+S    GS F F
Sbjct: 929 MNKLFEPFEQTKTGQ-KSQQGTGLGLPISRKFVQMMGGDITVSSTPELGSKFAF 981



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 28/145 (19%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            +P+ +IL+V+D   N +V   ++  LG  +    +G EA+   +     LI MD+ MPVM
Sbjct: 1009 QPEYRILVVDDRADNCLVIDRLLSPLGILVREARDGQEAIAVWEDWQPHLIWMDMQMPVM 1068

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG +ATR I+                  A P        K+  I+A+TA+A  E  +   
Sbjct: 1069 DGYEATRKIK------------------AHPLG------KQTVIVALTASAFEEERQTIL 1104

Query: 977  ANGMDSFVSKP----VTFQKLKECL 997
              G D F+ KP    + F K++E L
Sbjct: 1105 GAGCDDFMRKPFEAKILFAKMEELL 1129


>gi|408788053|ref|ZP_11199776.1| two component sensor kinase/response regulator hybrid [Rhizobium
           lupini HPC(L)]
 gi|408486131|gb|EKJ94462.1| two component sensor kinase/response regulator hybrid [Rhizobium
           lupini HPC(L)]
          Length = 1144

 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 106/161 (65%), Gaps = 2/161 (1%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL + +   E   RAK + LA MSHEIR+P+ GV+ MAE+L+ + LD  Q+    
Sbjct: 573 KMREGELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTD 632

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEG 468
           +++ SG+ +L +INDILD SK+E+G MKL +  F P E V+ V+   ++A+L+K + L  
Sbjct: 633 IIVKSGNALLTIINDILDFSKIEAGQMKLRSVSFDPAEAVEDVVSLLSSAALEKNIELVV 692

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            IA  V  +VIGD  R RQI+TNL+ NA+KFT  G V ++L
Sbjct: 693 RIAPSVFGKVIGDAGRFRQIVTNLVGNAVKFTETGHVLVEL 733



 Score = 86.7 bits (213), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 23/156 (14%)

Query: 849  AEVPETKPKPKPK---ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYD 905
            AEVP    + +P    +L+ EDN +N +V   +++Q G    +V NG +AV A +  N  
Sbjct: 994  AEVPTVSVRLRPSLIDVLVAEDNDVNQIVFTQILQQTGLRFLIVGNGKKAVQAWEEYNPA 1053

Query: 906  LILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965
            +ILMDV MPVM+G +AT+ IR+ E      AAAE                + +PII +TA
Sbjct: 1054 IILMDVSMPVMNGHQATQAIRTAE-----LAAAEG---------------RHVPIIGVTA 1093

Query: 966  NALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            +      + C   GMD ++SKP++ + L++ + Q+ 
Sbjct: 1094 HTQDADRDLCLQAGMDDYLSKPISPEILEDKIAQWL 1129



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 4/91 (4%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           EA + +R +  D+GIGIP + L T+F K+ QV +   R++ GTGLGLAI   LV L  G+
Sbjct: 742 EAILSLRVE--DSGIGIPSDKLETIFDKFSQVDSSATRRHEGTGLGLAITVGLVGLFNGK 799

Query: 647 LTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
           + V S+V  GS+F   +P+Q++  E   D P
Sbjct: 800 IDVVSEVGKGSSFEVNIPFQMT--ERRRDVP 828


>gi|428208223|ref|YP_007092576.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis PCC
            7203]
 gi|428010144|gb|AFY88707.1| multi-sensor hybrid histidine kinase [Chroococcidiopsis thermalis PCC
            7203]
          Length = 1321

 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 162/305 (53%), Gaps = 34/305 (11%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKL----DREQRQLLGVMISSGDLVLQLINDILD 427
            + ++ +SHE+R+PLT +     +L++  L    ++ QR +L + +++ D +++LINDILD
Sbjct: 763  EFVSVVSHELRTPLTSIRGALGLLASGVLHVNPEKAQR-MLDIAVNNTDRLIRLINDILD 821

Query: 428  LSKVESGVMKL-----EAAKFRPR--EVVKHVLQTAAASLQKILMLEGDIADDVPIEVIG 480
            + ++ESG + +     +AA    +  EVV+ + + A  SL             +  ++ G
Sbjct: 822  IERIESGKVAMNKQACDAASLMSQAIEVVRPLAEKAEISLS---------VTPISAQLWG 872

Query: 481  DVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE-PPFAKEGLKQKSKAYQSATDAVKEE 539
            D  RI Q+ TNL+SNAIKF+P G     +++  E      E  +Q+S+         K +
Sbjct: 873  DPDRIVQVFTNLLSNAIKFSPPGST---VWLSAELGSRESEAEEQRSREAGQGDKGDKGD 929

Query: 540  KHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDT 599
            K   + +    Q G   +      +  K  + P TP S          AT +I   V D 
Sbjct: 930  KGDKEDKGTRGQVGQGGQGSRGAEERSKIQNFP-TPASR--------LATPYITFQVKDI 980

Query: 600  GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTF 659
            G GIPE+ L T+F ++ QV A  +RK GGTGLGLAIC+ +V+  GGR+ VTS +  GSTF
Sbjct: 981  GRGIPEDKLETIFGRFQQVDASDSRKKGGTGLGLAICRNIVQRHGGRIWVTSTLGTGSTF 1040

Query: 660  TFILP 664
             FILP
Sbjct: 1041 YFILP 1045



 Score = 42.4 bits (98), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
            P   P IL+ +D+     V ++M++Q G+    V +G EAV     Q+ D IL+++ MP 
Sbjct: 1066 PYSSPLILVCDDDPSVRTVVQAMLEQGGYRAITVASGQEAVVEAAQQHPDAILLNLMMPG 1125

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAG-IEQAMPSSGSSNHFKRIP 959
            M+G +    +++   T +      +G +  A P  G S+   + P
Sbjct: 1126 MNGWETLAALKAQAKTKDIPVTILSGLLPDASPHPGVSDWIVKPP 1170


>gi|190892952|ref|YP_001979494.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CIAT 652]
 gi|190698231|gb|ACE92316.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 1126

 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 118/199 (59%), Gaps = 10/199 (5%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           +  VF   GE     ++ MD T  V   +    L  ++   K++E EL + +   E   R
Sbjct: 537 ISTVFHVGGE----RWVNMDAT--VSTGQHWVALFTDVTELKSREEELRELLSRAEAADR 590

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD 
Sbjct: 591 AKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFIDIIVKSGNALLTIINDILDF 650

Query: 429 SKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           SK+++G MKL  A F   E V+ V  L ++ A+ + I +L    A D+P  VIGD  R R
Sbjct: 651 SKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLV-RAAPDLPAAVIGDAGRFR 709

Query: 487 QILTNLISNAIKFTPEGKV 505
           QI+TNL+ NA+KFT  G V
Sbjct: 710 QIVTNLVGNAVKFTERGHV 728



 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 28/157 (17%)

Query: 851  VPETKPKPKPK------ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
            VP   P P+ +      +L+ EDN++N +V   +++  G S  VVNNG +AV A +    
Sbjct: 980  VPAPVPAPQKRAADFVDVLVAEDNEVNQIVFTQILQGTGLSFLVVNNGEQAVAAWESHTP 1039

Query: 905  DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
             +I+MDV MPVM+G +ATR IR  E                    G S   +R+PII +T
Sbjct: 1040 RIIMMDVSMPVMNGHEATRTIREKE-------------------KGQS---QRVPIIGVT 1077

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            A+AL    E C   GMD ++SKP++ + L+E + Q+ 
Sbjct: 1078 AHALESGREACLDAGMDDYMSKPISPELLEEKIRQWL 1114



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 48/73 (65%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIPE  L ++F K+ QV A   R++ GTGLGLAI   LV+L GG + V S+   
Sbjct: 748 IEDTGIGIPEEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVESQWGE 807

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 808 GSVFTVNLPFAVA 820


>gi|374603929|ref|ZP_09676902.1| histidine kinase [Paenibacillus dendritiformis C454]
 gi|374390479|gb|EHQ61828.1| histidine kinase [Paenibacillus dendritiformis C454]
          Length = 404

 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 145/292 (49%), Gaps = 70/292 (23%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LA MSHEIR+P+ GV+ M ++L +T+L  EQ     ++  S D +++ IN+ILD +K+
Sbjct: 171 QFLAMMSHEIRTPMNGVLGMVDLLMDTELTPEQGNYAEMIRKSADALIRTINNILDFTKM 230

Query: 432 ESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           ESG ++L+   F    +V  V  L T  AS ++ L L   IA DVP  + GD+ R+RQIL
Sbjct: 231 ESGKLELDEFPFNCNALVSEVYELFTPEAS-KRDLKLTYTIAPDVPNCLYGDMFRLRQIL 289

Query: 490 TNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTAS 549
            NL+ NA+KFT  G+V I++ ++PE        +Q+           +E++ + K Q   
Sbjct: 290 VNLVGNAVKFTDSGEVEIRISLLPE--------RQR-----------EEDQERMKVQ--- 327

Query: 550 DQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALP 609
               F  K  G G  ++K D                                        
Sbjct: 328 ----FEVKDSGVGIPENKMDG--------------------------------------- 344

Query: 610 TLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
            LF+ + Q+ +   RKYGG+GLGLAICK LV +M G +  T  V  G+ F F
Sbjct: 345 -LFQPFSQLDSSMNRKYGGSGLGLAICKSLVHMMQGDIR-TVPVEEGALFVF 394



 Score = 41.6 bits (96), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 31/143 (21%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            IL+V+D   N++  ++++ +  + +    +G EA+  +    + +I++DV MP MDG++ 
Sbjct: 9    ILMVDDRPENLLALEAVLSEESYRLVKATSGEEALRHLMKSEFAVIVLDVQMPGMDGIET 68

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF----A 977
             + I++ E T N                        IPII ++AN   +  E  F    A
Sbjct: 69   AKWIKAREKTKN------------------------IPIIFVSAN--YKETEHLFAGYSA 102

Query: 978  NGMDSFVSKPVTFQKLKECLEQY 1000
             G+D ++ KP     LK  +  +
Sbjct: 103  GGID-YMIKPFVPHILKSKIHSF 124


>gi|393233290|gb|EJD40863.1| hypothetical protein AURDEDRAFT_115725 [Auricularia delicata
            TFB-10046 SS5]
          Length = 1639

 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 122/423 (28%), Positives = 182/423 (43%), Gaps = 91/423 (21%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            E +V +   V DTGIGI ++ L  +F  + Q      R+YGGTGLGL+I K+LV LM G 
Sbjct: 1258 EQSVTLEFCVADTGIGIAKDKLTLIFDTFAQADGSTTREYGGTGLGLSISKRLVSLMQGN 1317

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLG 706
            + V S++  GS F F +  Q+S +   S                  +      F  RT+ 
Sbjct: 1318 MWVDSELGKGSKFYFTITSQLSELSIES------------------IQTKMAPFHSRTI- 1358

Query: 707  SLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAP-----LEDACSV 761
             L  + G S +       +G  + H V G +E +         K+  P     L D+ ++
Sbjct: 1359 LLIDTTGDSTALSKHIRELGL-NLHVVRGIAEVA--------DKDHCPHVDTILADSLTI 1409

Query: 762  AEVAETLSEPE----------SSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSH 811
             E    L E E          SS  H  +   + +   G+        W  + +  S   
Sbjct: 1410 TE---QLREYEHLRYIPVVLSSSVRHDKQRTTDVDKIFGQSATRLNLKWCLDSSISS--- 1463

Query: 812  SEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP-KILLVEDNKI 870
                  +I T  T        MQ+    I  +  S++   P   P      ILL EDN +
Sbjct: 1464 ------VITTPAT--------MQDLSSAIITAMESNTV-APVVAPTDVVFDILLAEDNMV 1508

Query: 871  NVMVAKSMMKQLGHSIDVVNNGVEAVHA-----VQCQNYDLILMDVCMPVMDGLKATRLI 925
            N  +A  ++++ GH +++  NG  AV A      Q + +D+ILMDV MP M G++AT LI
Sbjct: 1509 NQKLAVKILEKYGHIVEIAENGALAVDAFKQRVAQGRMFDIILMDVSMPFMGGMEATELI 1568

Query: 926  RSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985
            RS+E             EQ +P         R PIIA+TA+A+    E C   GMD  ++
Sbjct: 1569 RSYER------------EQNLP---------RTPIIALTAHAMIGDRERCLQAGMDDHIT 1607

Query: 986  KPV 988
            KP+
Sbjct: 1608 KPL 1610



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 121/209 (57%), Gaps = 27/209 (12%)

Query: 320  TIGVNYMGMDVTDQVRKREKMAKLREE------IAVQKAKE-----TELNKTIHITEETM 368
            T+ VN M  ++T QVR   +++    +      I V+ + E     T++N+ +    E++
Sbjct: 1028 TMSVNTMANNLTTQVRGFAQISAAAMDGDFTRFITVEASGEMDSLKTQINQMVVNLRESI 1087

Query: 369  --------------RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
                          R+K + LA MSHEIR+P+ G++ M E+  ++ L+R QR+ L ++ S
Sbjct: 1088 QKNSAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTELTLDSDLNRSQRESLLLVHS 1147

Query: 414  SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIAD 472
                +L +I+DILD+SK+E+G M +E   +  R+ V  +L+T    + Q  L L  D+  
Sbjct: 1148 LARSLLLIIDDILDISKIEAGRMTMEQVSYSIRQTVFGILKTLVVRASQNNLDLTYDVDP 1207

Query: 473  DVPIEVIGDVLRIRQILTNLISNAIKFTP 501
            D+P ++IGD LR+RQ++TNL+ NAIKFTP
Sbjct: 1208 DIPDQLIGDSLRLRQVITNLVGNAIKFTP 1236


>gi|153873243|ref|ZP_02001890.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152070291|gb|EDN68110.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 716

 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 155/304 (50%), Gaps = 36/304 (11%)

Query: 377 MSHEIRSPLTGVVSMAEILSNTK---LDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433
           MSHE+R+PL  ++ +A++L++ K   L  +Q +    + S+G  +L LIN+ILDLSK+E+
Sbjct: 1   MSHELRTPLNSLLILAQLLASNKEGNLTDKQTEYAQTIHSAGSDLLTLINEILDLSKIEA 60

Query: 434 GVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNL 492
           G ++++  K    ++ + V Q     + +K L     +ADD+   +  D  R++QIL NL
Sbjct: 61  GKIEVQVEKVSLADLQEAVDQKFRHVAEEKKLAFPISMADDLSPVINTDGQRLKQILNNL 120

Query: 493 ISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQN 552
           +SNA KFT +G+V  +L + P  P                          P    A +  
Sbjct: 121 LSNAFKFTSQGEV--RLEIQPTGP-------------------------HPSPLPAGEGT 153

Query: 553 GFHDKKHGEGYQDHKHDDDPG-TPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTL 611
           G H     E       ++  G  P+  G    E  + T  I   V DTG+GIP+N    +
Sbjct: 154 GPHPSPLRENLSPFILENSQGHPPLPLGEGRGEGHQKT--IAFSVTDTGVGIPKNKQQVI 211

Query: 612 FRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIE 671
           F  + Q     +R++GGTGLGL+I +QL  L+GG L + S+   GSTFT  LP +    +
Sbjct: 212 FEAFQQADGTTSRRFGGTGLGLSISRQLARLLGGELHLQSEEGKGSTFTLYLPEKFE--K 269

Query: 672 ENSD 675
           +NSD
Sbjct: 270 KNSD 273



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 25/134 (18%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ-NYDLILMDVCMPVMDGL 919
           K+L+V+D+  NV    ++++     +   +NG +A+  ++ Q N  ++LMD+ MP MDG 
Sbjct: 597 KVLIVDDDSRNVFALATVLENYDMEVIFADNGKKALKLLEEQDNIAIVLMDIMMPEMDGY 656

Query: 920 KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
           +A R IR+                QA         F+++PIIA+TA A+     +C   G
Sbjct: 657 EAMRKIRA----------------QA--------RFRQLPIIALTAKAMKGDKAKCIEAG 692

Query: 980 MDSFVSKPVTFQKL 993
            + +++KPV   KL
Sbjct: 693 ANDYLAKPVDTDKL 706


>gi|407068210|ref|ZP_11099048.1| histidine kinase [Vibrio cyclitrophicus ZF14]
          Length = 1060

 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 124/420 (29%), Positives = 182/420 (43%), Gaps = 87/420 (20%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E+ V IR  V DTGIGI +     +F  + Q      R++GGTGLGLAI  QLVELMGG+
Sbjct: 542 ESEVTIRFAVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQ 601

Query: 647 LTVTSKVHCGSTFTFILPYQVSPI-EENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTL 705
           + + S    GS F F L   V  I  + S    D+  +  ++ +++ +            
Sbjct: 602 IQLNSVKGEGSCFYFDLELPVDLILPKPSTASADIYMLGKENMLSERIECNL-------- 653

Query: 706 GSLFSSNGTSRSKKLLPNSIGFASAHKVNG-----FSETSYSFPSNNRQKETAPLED-AC 759
            +L+  N   R+K  +  +   A+  K N      F+E   +F +NN   E   L +   
Sbjct: 654 -NLYGLNVVQRTKDTVRLTEQLAT-QKHNKPITVVFAEDD-TFQANNYSNELNRLHNNGI 710

Query: 760 SVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMI 819
           ++  +   LSEP               V  G            N  T   S       +I
Sbjct: 711 TICLIRSFLSEP---------------VDLG------------NCITAQVSQPLLGLRLI 743

Query: 820 QTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKP---KPKILLVEDNKINVMVAK 876
           +  +      +C+ Q              AE+ ET  +P   + KIL+VEDN+IN  +A 
Sbjct: 744 KAVE------LCDTQ------------GLAELSETTQQPLEIQHKILIVEDNRINQKIAG 785

Query: 877 SMMKQLGHSIDVVNNGVEAVHAVQCQ-NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
             + + G   +  NNG EA+       +Y  ILMD  MPVMDG +AT  IR  E      
Sbjct: 786 LHVGKSGFEFEFANNGQEAIDKFTVNPHYAAILMDCMMPVMDGFEATSNIRRIE------ 839

Query: 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKE 995
                           +   +RIPIIA+TA+ + +  ++CF  GMD +V KP  F+ LKE
Sbjct: 840 --------------LETKATRRIPIIALTASVIDDDIQKCFDVGMDDYVPKPFKFEMLKE 885



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 103/175 (58%), Gaps = 12/175 (6%)

Query: 337 REKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILS 396
           +EK+ + +E+   +KAK+       H  + +      LA MSHEIR+PL GV+ ++EIL+
Sbjct: 371 KEKLTQAKED--AEKAKD-------HAIQASKAKSSFLANMSHEIRTPLNGVIGISEILA 421

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
           +T L   QR  +  + +S  L+L LINDILD SK+ESG++ +       RE +  +    
Sbjct: 422 DTPLTPTQRDYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIV 481

Query: 457 A--ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           A  A  QKI  ++ DI+ D P  V+ D  R+RQIL N +SNA+KFT EG V + +
Sbjct: 482 APKAKEQKI-SVDVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSI 535



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 32/161 (19%)

Query: 834  QEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV 893
            Q  PD + Q          +T P+   +ILLVEDN++N  VA  M+ + G++ ++  NG 
Sbjct: 922  QTLPDELKQ----------KTIPRKSERILLVEDNRVNQKVASLMLTKAGYAFELAENGQ 971

Query: 894  EAVHAVQCQN-YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
             AV   Q  + +D+ILMD  MPVMDG  AT+ IR +E                       
Sbjct: 972  IAVDMYQNDSGFDVILMDCMMPVMDGFTATKEIREYEKNLG------------------- 1012

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKL 993
                + PIIA+TA+ + +  ++CF +GMD +V+KPV  +KL
Sbjct: 1013 --LSKTPIIALTASVIDDDIQKCFDSGMDGYVAKPVRKEKL 1051


>gi|338212729|ref|YP_004656784.1| multi-sensor hybrid histidine kinase [Runella slithyformis DSM 19594]
 gi|336306550|gb|AEI49652.1| multi-sensor hybrid histidine kinase [Runella slithyformis DSM 19594]
          Length = 1457

 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 187/418 (44%), Gaps = 75/418 (17%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R +V DTGIGI  +    +F  + Q  A   +KYGGTGLGLAI  +L+ LMG RL + S
Sbjct: 971  LRFEVRDTGIGIKPDKQEKIFDAFSQEDASTTKKYGGTGLGLAISNKLLGLMGSRLQLRS 1030

Query: 652  KVHCGSTFTFILPYQVSPIE----ENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGS 707
            +   GSTF F L  +  P E    EN D   ++  + D D+                   
Sbjct: 1031 EPGQGSTFYFDLTLKTEPGESITWENIDLIKNVLIVDDNDN------------------- 1071

Query: 708  LFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAET 767
                N     + LL   I   S    NGF   +    +  ++ +   ++      +  ET
Sbjct: 1072 ----NRVILRQMLLLKQI--VSEEAKNGFE--ALQLLAQGKRYDAIMMDYHMPYMDGLET 1123

Query: 768  LSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEP 827
            + +  SSF   PE               E      + +++  +  +   E++   +  +P
Sbjct: 1124 IRKIRSSFQKLPE---------------EQPVILLHSSSDDGTIIKGCEELMVNQRLVKP 1168

Query: 828  QKICEMQEKPDRI---SQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
             K+ EM +   R+   ++  S+ S  V   K     ++L+ EDN +N+++AK+++++   
Sbjct: 1169 IKMQEMYDALSRMYRKTEKVSAQSLAVENKKESGNIRVLIAEDNPVNMLLAKTIIRRAAP 1228

Query: 885  SIDVVN--NGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGI 942
            +  ++   NG EA+ A Q Q  D+I MDV MP M+G +AT++IR+ +             
Sbjct: 1229 NAVIIESLNGREALRACQAQLPDIIFMDVQMPEMNGYEATQMIRNLQ------------- 1275

Query: 943  EQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                    +  H   +PIIA+TA  L    ++C   GMD F++KP   + +    E++
Sbjct: 1276 --------ADVH---VPIIALTAGNLKGEKDKCLEAGMDDFIAKPFVEEAIISLFEKW 1322



 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 148/287 (51%), Gaps = 22/287 (7%)

Query: 228 LQNAPVVMGHQDKELRYRFIYNHFP---SLHEEDILGKTDVEIFSGAGVKESQDFKREVL 284
           +++AP  +   D++ +Y  I N +     L   ++LG +  E+F     +E +D     L
Sbjct: 689 VEHAPAAVAMLDRDFKYIAISNRWVEEYQLKGRNVLGLSHYEVFPNVS-QEWKDIHARCL 747

Query: 285 EKGLPAKREITFETELFGSKTFLIY-VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKL 343
              +  K E  +  E +    FL + V P F   G   G+     D+TD   +RE++ K 
Sbjct: 748 LGAVEKKEEDKWRPEGWEHDQFLKWEVRPWFQFDGSVGGIMMFTQDITDVCLQREELKK- 806

Query: 344 REEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
               A  +A++  + K+           + LA MSHEIR+PL GV+   ++L  T L+  
Sbjct: 807 ----AKVQAEQASVAKS-----------EFLANMSHEIRTPLNGVIGFTDLLLKTALNET 851

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-K 462
           Q+Q L ++  S + +L +INDILD SK+E+G ++L+  +    E+            Q K
Sbjct: 852 QQQYLSIVNQSANSLLSIINDILDFSKIEAGKLELDIDRCDIFELGSQTADIITYQAQSK 911

Query: 463 ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            L +  +I+ ++P  +  D +R++Q+L NL+SNA+KFT EG++ +K+
Sbjct: 912 GLEMLLNISLNLPRFIWTDEVRLKQVLVNLLSNAVKFTKEGEIELKI 958


>gi|389684575|ref|ZP_10175903.1| sensor histidine kinase/response regulator [Pseudomonas
           chlororaphis O6]
 gi|388551798|gb|EIM15063.1| sensor histidine kinase/response regulator [Pseudomonas
           chlororaphis O6]
          Length = 942

 Score =  132 bits (332), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 160/327 (48%), Gaps = 78/327 (23%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L +   + +    AK + LATMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 434 DISARKQVEAALEEARQMADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTQLDTQQ 493

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
           R  L  +  S   +LQLI D+LD+SK+E+G + LE  +F P ++V  ++Q  +AA+  K 
Sbjct: 494 RDYLRAIECSSSTLLQLICDVLDVSKIEAGQLALELNEFSPLDLVHELIQGYSAAASNKG 553

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLK 523
           L+L   +   +P  +IGDV RIRQIL+NL++NA+KFT  G++ +++ ++     +++G  
Sbjct: 554 LLLYSCVDPQIPERLIGDVTRIRQILSNLLNNAVKFTDLGRIVLRVNLL-----SRDG-- 606

Query: 524 QKSKAYQSATDAVK--EEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNS 581
           ++S      +D  K   + HQP       Q G                         GN+
Sbjct: 607 ERSSILWQVSDTGKGIAQDHQPLIFEPFYQTG-------------------------GNT 641

Query: 582 MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
                         V  TG+G+P                              IC++L +
Sbjct: 642 N------------VVAGTGLGLP------------------------------ICQRLTQ 659

Query: 642 LMGGRLTVTSKVHCGSTFTFILPYQVS 668
           LM G L + S++  GS+F+  LP + +
Sbjct: 660 LMNGSLRMVSELGLGSSFSLTLPLEAA 686



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 26/140 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            K+L+ EDN IN ++ +  +++LG S+++ +NG EA+     + +DL+L DV MPVM+G +
Sbjct: 821  KVLVAEDNVINQLILRDQLEELGCSVELASNGEEALSMWNPERFDLVLTDVNMPVMNGYE 880

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
              + +R    T                          +PII  TANA+    E+C A GM
Sbjct: 881  LAKELRRRGCT--------------------------VPIIGATANAMRGEEEQCLAAGM 914

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            +  + KP   + L   L  Y
Sbjct: 915  NHCLVKPFALRALFNYLAPY 934


>gi|418407316|ref|ZP_12980634.1| two component sensor kinase/response regulator hybrid [Agrobacterium
            tumefaciens 5A]
 gi|358006460|gb|EHJ98784.1| two component sensor kinase/response regulator hybrid [Agrobacterium
            tumefaciens 5A]
          Length = 1232

 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 130/432 (30%), Positives = 193/432 (44%), Gaps = 73/432 (16%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V D+GIGIP + L T+F K+ QV     R++ GTGLGLAI   LV L  G + V S+V  
Sbjct: 836  VEDSGIGIPADKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGTINVVSEVGK 895

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDS---VTDD--VTAGFFQFQPRTLGSLFS 710
            GSTF   +P+ V+  E+  D P  L  MA +D    V DD  V       Q +T G    
Sbjct: 896  GSTFEVNIPFHVT--EKRRDAP--LLAMAIEDIRVLVIDDNDVNRRILTEQLKTWGI--- 948

Query: 711  SNGTSRSKKLLPNSIGFASAHKVNGFSETS----YSFPSNN------RQKETAPLEDACS 760
             +G +      P+ I         GF+  +    Y  P  N      R +  +  +D   
Sbjct: 949  -DGHAVQDG--PSGIAVLQEAASLGFTIDAIILDYHMPVMNGLDVVERIRADSRFDDIAI 1005

Query: 761  VAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHS---EANRE 817
            V   +  +   ES F         T++S   Q H+        PA      S   +  R+
Sbjct: 1006 VFLTSMDVVGDESLF---------TDLS--VQAHL------MKPARARLLRSTLFDVVRD 1048

Query: 818  MIQTSKTNEPQKICEM-QEKPDRISQSPS-------SSSAEVPETKPKPKPKILLVEDNK 869
            + Q     +PQ +     + P R    P+       S    VP+ +      +L+ EDN 
Sbjct: 1049 VRQKRARQDPQGLGSGGSDAPVRPDNGPTDKKRRVVSPPTMVPDRRRPCLVDVLVAEDND 1108

Query: 870  INVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFE 929
            +N +V   +++Q G    +V NG +AV A +  N  +ILMDV MPVM+G +AT  IRS E
Sbjct: 1109 VNQIVFTQILQQAGLRFLIVGNGKKAVQAWEEHNPAVILMDVSMPVMNGHQATMAIRSAE 1168

Query: 930  DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVT 989
                  AAA+                + +PII +TA+      E C A GMD ++SKP++
Sbjct: 1169 -----QAAADG---------------RHVPIIGVTAHTQDADRELCIAAGMDDYLSKPIS 1208

Query: 990  FQKLKECLEQYF 1001
             + L++ + Q+ 
Sbjct: 1209 PEILEDKIAQWL 1220



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 105/161 (65%), Gaps = 2/161 (1%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL + +   E   RAK + LA MSHEIR+P+ GV+ MAE+L+ + LD  Q+    
Sbjct: 660 KMREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTD 719

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEG 468
           +++ SG+ +L +INDILD SK+E+G MKL +  F P E V+ V+   ++A+L+K + L  
Sbjct: 720 IIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKNIELVV 779

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            I   V  +V+GD  R RQ++TNL+ NA+KFT  G V I+L
Sbjct: 780 RIDPSVFGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLIEL 820


>gi|385798974|ref|YP_005835378.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
           DSM 2228]
 gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
           DSM 2228]
          Length = 921

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/194 (41%), Positives = 123/194 (63%), Gaps = 5/194 (2%)

Query: 323 VNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEI 381
           V  + +D+T++V    KM +   E+   K K  EL +      E  RAK + L+TMSHEI
Sbjct: 358 VQIVYVDITEKVEALNKMEEYSNEL---KLKNLELKQARDKAMEASRAKSEFLSTMSHEI 414

Query: 382 RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
           R+P+  ++ MAE+L  T+L  +Q++ + +  ++G+ +L LINDILDLSK+E+G ++LEA 
Sbjct: 415 RTPMNSIIGMAELLQETELSEQQQKYINIFQNAGESLLTLINDILDLSKIEAGRIELEAE 474

Query: 442 KFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFT 500
           KF   E V+++ +  +  + +K L L   IA +VP  VIGD  RIRQIL NL+ NA+KFT
Sbjct: 475 KFNLVETVENIAEMISLRAFKKGLELPLRIAAEVPECVIGDSERIRQILINLLGNAVKFT 534

Query: 501 PEGKVGIKLYVVPE 514
            +G+V + L +  E
Sbjct: 535 EKGQVFLDLRIDSE 548



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 21/139 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+VEDN  N  + K+ +K+  + +D+  NG+EAV   + + YDL+LMD+ MP M+G +A
Sbjct: 803  LLIVEDNPDNRFLIKAFLKKKNYQLDIAKNGIEAVEKFKSKLYDLVLMDIQMPEMNGYQA 862

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
               IR +E                       N   + P++A+TA AL    E+    G D
Sbjct: 863  VNEIRKWE---------------------KENKKIKTPVVALTAYALDSDKEKALKEGFD 901

Query: 982  SFVSKPVTFQKLKECLEQY 1000
              ++KP+   KL + + +Y
Sbjct: 902  DHLTKPLKKDKLYQLIAKY 920



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 46/72 (63%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGI +     +F  + Q  +   RKYGGTGLGL I KQLVELMGG++ + S    
Sbjct: 561 IKDTGIGIEKAKQKQIFDSFTQADSSSTRKYGGTGLGLTISKQLVELMGGKIWLKSTPQL 620

Query: 656 GSTFTFILPYQV 667
           GSTF F LP ++
Sbjct: 621 GSTFYFSLPLKI 632



 Score = 44.3 bits (103), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 853 ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV----HAVQCQN-YDLI 907
           +T+   + KIL+V+DN  N+ + K ++ + G  I    N  EA+     +++ Q  Y +I
Sbjct: 643 QTRNFEQYKILVVDDNPTNIFILKEILAERGIEIGTAQNQQEALTEIAQSIEAQAPYQII 702

Query: 908 LMDVCMPVMDGLKATRLIRSFEDTGN 933
           LMD  MP  +GL  ++ IR   D  N
Sbjct: 703 LMDNFMPQKNGLDTSKKIREKFDLPN 728


>gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella
            sediminis HAW-EB3]
 gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella
            sediminis HAW-EB3]
          Length = 2213

 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 172/331 (51%), Gaps = 29/331 (8%)

Query: 189  EQALMEK-LNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRF- 246
            E+  M+K L  S  +LEK       L + LK+   ++  +L+N P+ +  +D +  YRF 
Sbjct: 1311 ERKRMDKELRLSKEDLEKTLYEKTSLEEKLKQNVAYMTTLLENLPIAVFAKDVKNDYRFT 1370

Query: 247  IYNHFP----SLHEEDILGKTDVEIFSGAGVKESQDFKR--EVLEKGLPAKREITFETEL 300
            ++NH            I+G+ D ++FS    +E+  F+R  E + K L  K         
Sbjct: 1371 LWNHVAVEIFGFKSGQIIGRNDYDLFS---TEEANHFRRTDEEIVKHLGIKD-------- 1419

Query: 301  FGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKT 360
                   I  E + +  GE I ++ + + V ++  +   +  + ++I  +K  E EL + 
Sbjct: 1420 -------IQEETITTSHGERI-LHTVKVAVPNESGESNILLGITQDITDRKQAEEELMRA 1471

Query: 361  IHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVL 419
              + E   RAK   LA MSHEIR+P+  ++ M+ +   T LDR+QR  +  + S+ + +L
Sbjct: 1472 KRVAENATRAKSDFLANMSHEIRTPMNAIIGMSHLALQTGLDRKQRDYINKIQSASESLL 1531

Query: 420  QLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEV 478
             LINDILD SKVE+G M++E   F   + +  + Q     + +K L L  D   DVP  +
Sbjct: 1532 ALINDILDFSKVEAGKMEIERKPFNLNDTLDKLAQLITVKTREKKLELLIDTHKDVPCGL 1591

Query: 479  IGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            IGD LR+ QIL NL +NA+KFT +G+V + +
Sbjct: 1592 IGDSLRLGQILINLTNNAVKFTEKGEVVVSI 1622



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 70/127 (55%), Gaps = 24/127 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +LLVEDN IN  VA  +++  G  +   ++G EA   V+ + +D+ILMD+ MPVMDG  A
Sbjct: 1877 VLLVEDNDINQQVATELLEMAGLVVTTASDGQEACERVKTELFDVILMDIQMPVMDGYTA 1936

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR F                    SG    ++ +P+IAMTANA+    E+C   GM+
Sbjct: 1937 TRHIRKF--------------------SG----YEELPVIAMTANAMDGDREKCLDAGMN 1972

Query: 982  SFVSKPV 988
              ++KP+
Sbjct: 1973 DHIAKPI 1979



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 50/83 (60%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            V ++  V DTGIG+ +  +  LF+ + Q  A   RKYGGTGLGL I K+L ELMGG ++V
Sbjct: 1632 VTLKFTVKDTGIGMTKEQMGKLFQSFSQADASTTRKYGGTGLGLTISKKLTELMGGAISV 1691

Query: 650  TSKVHCGSTFTFILPYQVSPIEE 672
             S    GS+F F   + +S   E
Sbjct: 1692 ESTFGKGSSFVFTANFGLSQAAE 1714


>gi|197117192|ref|YP_002137619.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
 gi|197086552|gb|ACH37823.1| periplasmic substrate-binding sensor histidine kinase response
           regulator, PBPb and PAS domain-containing [Geobacter
           bemidjiensis Bem]
          Length = 882

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 113/172 (65%), Gaps = 2/172 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           ++  +K  E  L + +   E   RAK + L+ MSHEIR+P+ GV+ M ++L  T+L+ EQ
Sbjct: 479 DVTERKEAEEALRQAMDAAERANRAKSEFLSNMSHEIRTPMNGVIGMTQLLELTELNAEQ 538

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA-AASLQKI 463
           R+ +  + S G  +L LINDILD+SK+E+G+M LE+ +F   + ++ V+ T   A+ +K 
Sbjct: 539 REYVSSLKSCGKNLLTLINDILDISKIEAGMMTLESEQFSLLQSIRDVVMTQNPAAREKA 598

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
           L L+ ++A DVP  V+GD LR +QIL NL+ NA+KFT +G V I + ++ +P
Sbjct: 599 LRLQVEVAPDVPDAVLGDQLRFKQILLNLLGNAVKFTEKGGVTITVTLLEQP 650



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 48/74 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG+GI   AL  +F+ ++QV     RKYGGTGLGL+I ++L E+MGG +++ S    
Sbjct: 660 VRDTGVGIAAEALEEIFKPFVQVDGSTTRKYGGTGLGLSISRRLAEMMGGSISIESTPGV 719

Query: 656 GSTFTFILPYQVSP 669
           GS FT  LP   +P
Sbjct: 720 GSCFTLTLPLSPAP 733



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 22/139 (15%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           ++LLVE+++ N+M A S+ K+LG    V  NG E +  ++  +YD++LMD+ MPVM G +
Sbjct: 756 RLLLVENDQTNIMFAASLFKKLGMETTVAENGRECLAQLEQGDYDVVLMDIQMPVMSGDE 815

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           A R IR  E                    G+S H    P+IA+TA +L++        G 
Sbjct: 816 ALRQIREKE-------------------QGTSIH---QPVIALTAYSLNDDKRRFREEGF 853

Query: 981 DSFVSKPVTFQKLKECLEQ 999
           D ++SKP+   +L + L++
Sbjct: 854 DGYLSKPLETGELIQELQR 872


>gi|154254026|ref|YP_001414850.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157976|gb|ABS65193.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 744

 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/198 (40%), Positives = 119/198 (60%), Gaps = 17/198 (8%)

Query: 313 VFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ 372
           +  + G+ + +  +G DVTD+    EK+A     IA+++AKE    K++           
Sbjct: 156 IRDEDGKLVEIQAVGRDVTDRKDAEEKLA-----IALEQAKEANRAKSL----------- 199

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LATMSHEIR+P+ GV+ M ++L +TKLD  QR     + +SG+ +L +INDILD SK+E
Sbjct: 200 FLATMSHEIRTPMNGVIGMTKLLLDTKLDPAQRSYAEAVRASGEALLNIINDILDYSKIE 259

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G + L+ A F PR V++ V +  A  +  K L +  +I+  VP  ++GD  RIRQIL N
Sbjct: 260 AGKVTLDEAAFDPRNVLESVAELLAPRAFDKGLEIVTEISPSVPRMLMGDEARIRQILLN 319

Query: 492 LISNAIKFTPEGKVGIKL 509
           L  NAIKFT  G V ++L
Sbjct: 320 LAGNAIKFTGRGGVALRL 337



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 74/134 (55%), Gaps = 26/134 (19%)

Query: 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMP 914
           P   +L+ EDN+IN ++ +++++  GH++ +  +G EAV A++       DL+LMD+ MP
Sbjct: 604 PPLNVLVAEDNEINALLTRTLLEHTGHTVRLARDGAEAVAALEADTGGKIDLVLMDLHMP 663

Query: 915 VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE 974
            MDG  AT  IR  E                MP +        +PIIA+TANA+++  + 
Sbjct: 664 GMDGFTATARIRDLE----------------MPHAA-------LPIIALTANAMADDRQA 700

Query: 975 CFANGMDSFVSKPV 988
           C   GMD ++SKPV
Sbjct: 701 CLDAGMDDYLSKPV 714



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 60/106 (56%)

Query: 579 GNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQ 638
           G  +D   E  + +  +V DTGIG+ E A   +F  + Q    HAR+Y GTGLGLAI K+
Sbjct: 346 GRRIDGKREGRIGLILEVEDTGIGMDEQAREHIFDDFAQADQSHARRYEGTGLGLAITKR 405

Query: 639 LVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMA 684
           LV  M GR+ V S+   GS F   LP +++  E +   P+ L+ ++
Sbjct: 406 LVGAMEGRIEVESEEGRGSVFRAHLPLRLALGEHDGPAPEPLAGLS 451


>gi|254504175|ref|ZP_05116326.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11]
 gi|222440246|gb|EEE46925.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11]
          Length = 827

 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 193/441 (43%), Gaps = 87/441 (19%)

Query: 582  MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
            M+E  E    +R  V D GIG+       LF+ + Q      R++GGTGLGL I ++LV+
Sbjct: 313  MNEISEGQATVRYQVQDHGIGMTPEQTANLFQPFQQADVSTTRRFGGTGLGLTIVRRLVD 372

Query: 642  LMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQ 701
            +MGG + V S    GSTFT  L +++   E   +   DL+ +     V DD T   +   
Sbjct: 373  MMGGTIDVESVPGDGSTFTVTLTHEIVE-EAGVETGHDLAGVKVLALVPDDPTR--WTLI 429

Query: 702  PRTLG-SLFSSNGTSRSKKLLPNSIGFASAHKVN----------GFSETSYS-----FPS 745
               LG S  S +  S  + LL ++I    AH+ +          G+ ET+ +     F +
Sbjct: 430  ETYLGCSGASVDLVSEPELLLQSAI---EAHEKSAPYDTVLLGLGYEETARADLRERFRA 486

Query: 746  NNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPA 805
            ++  K+T  L +   +A++   L  P+++                             PA
Sbjct: 487  DDHLKQTRFLVER-RMADLGTPLELPDTTVV---------------------------PA 518

Query: 806  TESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSS----AEVPETKPKPKPK 861
            T  T  +  N   +   + +           P  I  +PS  +    A   +        
Sbjct: 519  TPLTRRNLLNALCVAMGRAS-----------PSAIRHAPSVEAGGCIAPSADEAMANGEL 567

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L++EDNK N  V +  ++ LG+  ++  +G   +  ++   + ++L DV MP +DGL+ 
Sbjct: 568  VLVIEDNKTNQDVIQRQLRLLGYQCEIAEDGEAGLATMRSGRFGVVLSDVHMPKLDGLEM 627

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR  R+ E  G+                       R+PIIA+TANAL   A+ C   GMD
Sbjct: 628  TRQFRAHETNGS----------------------TRVPIIAITANALQGEADRCLEAGMD 665

Query: 982  SFVSKPVTFQKLKECLEQYFP 1002
             F+ KP+  +KLKE L+++ P
Sbjct: 666  DFLPKPLEMKKLKEMLKRWLP 686



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 17/196 (8%)

Query: 329 DVTDQVRKREKMAKLREEIAVQKAKETELN-------------KTIHITEETMRAKQM-L 374
           D+T++V  R ++ +  EE+  ++A++  L+             +     E   +AK M L
Sbjct: 118 DITERVAARHQLLRQMEEL--KEARQATLDMMEKAEANRKRAEELREKAESATKAKDMFL 175

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           A MSHEIR+P+ GVV M ++L++T LD EQ Q+   +  S   +L +INDILD SK+E+G
Sbjct: 176 AAMSHEIRTPMNGVVGMIDLLTHTDLDDEQMQMAATVRDSAFALLTIINDILDFSKIEAG 235

Query: 435 VMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493
            M LE       +VV+ V +T    +  K+L         +P EV GD +R+RQIL NL+
Sbjct: 236 KMDLEMIPMSILDVVEGVGETMGPNACAKVLDFIAYCDPRIPAEVAGDQVRLRQILFNLL 295

Query: 494 SNAIKFTPEGKVGIKL 509
            NA+KFT  G+V +++
Sbjct: 296 GNAVKFTEAGQVTLRV 311


>gi|258514818|ref|YP_003191040.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778523|gb|ACV62417.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1172

 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/270 (35%), Positives = 142/270 (52%), Gaps = 31/270 (11%)

Query: 246 FIYNHFPSLHEEDILGKTDVEIFSGAGVKESQD----FKREVLEKGLPAKREITFETELF 301
           F  N+       ++LGK+  +  +G  + E ++    FK +     +   R I  E E+ 
Sbjct: 327 FFLNYIAGCSRSELLGKSIWDFHAGDLLGEVRNLINSFKTKSYSSHVSVTRRIR-ELEM- 384

Query: 302 GSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTI 361
                ++ V+P++S +G   GV    +DVT+  R R         I  ++AKE       
Sbjct: 385 -----IMRVQPIYS-NGLYQGVLLNAIDVTELSRAR---------IEAERAKEQ------ 423

Query: 362 HITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQ 420
              E   RAK   LA MSHEIR+P+ G++  AEIL N  L  EQ++ +  +   G+ +L 
Sbjct: 424 --AESANRAKSDFLAVMSHEIRTPMNGILGFAEILLNQALSSEQKESVQAISLCGEQLLD 481

Query: 421 LINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVI 479
           LIN+ILDLSK+ESG M LE   F    ++K V+ T     Q K L +  +  DD+P   I
Sbjct: 482 LINEILDLSKIESGKMVLEETDFSLENIIKDVITTVRQKAQDKGLEIRVNFLDDIPQRFI 541

Query: 480 GDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           GD +RIRQIL+NL+ NA+KFT +G V I +
Sbjct: 542 GDSIRIRQILSNLLFNAVKFTMQGSVIISV 571



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 30/166 (18%)

Query: 826  EPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPK---ILLVEDNKINVMVAKSMMKQL 882
            EP+K+ +   K  ++    +++SA++     +   K   IL+ ED+ +N  + +S +   
Sbjct: 911  EPKKLVQ---KVAQLVYEYTATSADIESDGGESGKKAYNILVAEDHILNQKIIESFLVTE 967

Query: 883  GHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGI 942
            GH + +V +G E +HA++  N+DLILMD+ MP MDG +    IR+ +  G+         
Sbjct: 968  GHRVTMVKDGAEVLHALKSNNFDLILMDMQMPTMDGYETMARIRAEKKWGS--------- 1018

Query: 943  EQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
                           +PI+A+TA A+    E+CF  G + ++SKP+
Sbjct: 1019 ---------------MPIVAITAYAMKGDEEKCFEAGCNYYLSKPI 1049



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 3/107 (2%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           ++ +V DTGIGI ++    +F  + Q     A+K+GG+GLGL IC+ L++LMGG + V S
Sbjct: 587 LQIEVADTGIGISQDKRELIFDAFTQAEGVIAQKFGGSGLGLTICRSLLDLMGGEIWVNS 646

Query: 652 KVHCGSTFTFILPYQV---SPIEENSDDPDDLSDMADQDSVTDDVTA 695
               G+ FTF LP ++      E N+ + + +SD A    V DD  A
Sbjct: 647 NKPQGTIFTFCLPVKIHFDGAKESNNFENESVSDGATILVVEDDRVA 693


>gi|226945550|ref|YP_002800623.1| integral membrane hybrid histidine protein kinase [Azotobacter
            vinelandii DJ]
 gi|226720477|gb|ACO79648.1| integral membrane hybrid histidine protein kinase [Azotobacter
            vinelandii DJ]
          Length = 914

 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 173/409 (42%), Gaps = 67/409 (16%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V D+GIGI + A   LF  + Q  +   R+YGG+GLGLAI K+LVE+MGG + V S    
Sbjct: 562  VSDSGIGIRQEAQARLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMGGHIEVQSTPGL 621

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTS 715
            GS FTF LP Q        +  D+L  +    +    + A    F    +G L    G +
Sbjct: 622  GSRFTFNLPLQ-----RGGEMRDELFQLLAGRTA---LLASLDGFALDAIGRLLGRWGMN 673

Query: 716  RSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESSF 775
              +  +P  +            E   SF         AP     SV    + L      +
Sbjct: 674  TERCRIPEKL-----------PEQLASFDEPPLLLLIAPWPG--SVEYWLDAL------Y 714

Query: 776  SHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQE 835
             H    +    +   +QC        Q PA+ S+ H              +P  +  +++
Sbjct: 715  PHLAPGQRLLLICPPEQCR-------QLPASRSSLHMLG---------LPQPVGVAALRK 758

Query: 836  KPDRISQSPSSSSAEVPETKPKPK-PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            K   +   PS +   + +   +   P IL+ EDN +N +V + ++K+ G+++ +  NG E
Sbjct: 759  KLVELHMEPSHALVPIEDHAGESHIPCILIAEDNPVNQLVVQELLKKRGYNVRLAGNGAE 818

Query: 895  AV--HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
            AV  +     +  +ILMD  MP MDG +AT  IR  E    W A                
Sbjct: 819  AVAEYHRAPSSIQMILMDCEMPEMDGFEATLQIRLLERLRKWPA---------------- 862

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                 +PIIA+TA+ L E  E     GM+ F+ KPV  Q L   +E+Y 
Sbjct: 863  -----VPIIALTAHTLDEHREYGLEVGMNDFLGKPVDKQLLHATVERYL 906



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 89/135 (65%), Gaps = 1/135 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+PL GV+ M ++L  T+LD  QR  +  + SSG  ++ +INDILD +++
Sbjct: 408 RFLAKMSHEIRTPLNGVLGMLQLLKETRLDHSQRFYVDTIASSGSTLMAVINDILDYARI 467

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG + LE  +F   E++   L    A +++K L L   + + VP  + GD  R++Q+LT
Sbjct: 468 ESGKLSLEHIEFDLEEMLSDTLNLFTAQAMEKRLRLHMSLDEGVPRHIQGDPTRLKQVLT 527

Query: 491 NLISNAIKFTPEGKV 505
           NL+SNA+KFT EG+V
Sbjct: 528 NLLSNALKFTSEGQV 542


>gi|170077617|ref|YP_001734255.1| two-component hybrid sensor kinase/response regulator [Synechococcus
            sp. PCC 7002]
 gi|169885286|gb|ACA98999.1| two-component hybrid sensor kinase and response regulator with PAS
            and HAMP domains [Synechococcus sp. PCC 7002]
          Length = 1280

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 183/434 (42%), Gaps = 79/434 (18%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE-------- 641
            V +R  + DTGIGIP   +  LF+ + Q  A  +R+YGGTGLGL I K+LVE        
Sbjct: 884  VCLRFAILDTGIGIPAQQMTRLFQPFSQGDASTSRRYGGTGLGLVISKRLVELMGGKLWV 943

Query: 642  ----LMGGRL---------TVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDS 688
                +M G+           +   V   + F   +P+ ++PI        +L     + +
Sbjct: 944  ESGGIMAGQFPQEMSPDPPKIFQSVARQTVFYAQIPFTIAPISAKEITLHELPPQLQEKN 1003

Query: 689  VTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPN-SIGFASAHKVNGFS---ETSYSFP 744
                  +  F    R++  L ++ G + S   + + ++       ++      +T     
Sbjct: 1004 FLILHPSPLF---ARSISHLLTATGAAVSHTTMASGALDILHQRSIDLLMMEMKTDLVSA 1060

Query: 745  SNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNP 804
               RQ + +      ++  +A  LS  ES+  H P    + ++                 
Sbjct: 1061 DFFRQIKQSSQNPDLAIVAIAPPLSTAEST--HYPAISQQLQL----------------- 1101

Query: 805  ATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILL 864
                       R+ I+         +   +  P    +  S   A + +  P    +ILL
Sbjct: 1102 -----------RQPIKQEALYHCLSLAIAEALPTTAREPASPFDATLGQAYPL---RILL 1147

Query: 865  VEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRL 924
             EDN +N  VA +++ +LG+ ++V  NG+E +  +Q  NYD+ILMDV MP MDGL+ATR 
Sbjct: 1148 AEDNIVNQKVALNILARLGYGVEVATNGLEVLSRLQSDNYDVILMDVQMPAMDGLEATRQ 1207

Query: 925  IRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984
            IR  +                  +    +  KR  IIAMTANA+    + C   GMD ++
Sbjct: 1208 IRQRD------------------ARSPQSQGKRPWIIAMTANAMQGDRQVCLDAGMDDYL 1249

Query: 985  SKPVTFQKLKECLE 998
            SKP+  +KL   L+
Sbjct: 1250 SKPIQVKKLLHALK 1263



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 110/187 (58%), Gaps = 19/187 (10%)

Query: 329 DVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTG 387
           D+TD         K+  EI ++ AKE          E+  RAK + LATMSHEIR+P+  
Sbjct: 706 DITD---------KVEAEIQLKLAKED--------AEQANRAKSEFLATMSHEIRTPMNA 748

Query: 388 VVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447
           V+ MAE+L +T L  +Q++ + ++ +SG  +L +INDILD SK+ESG  +LE   F  + 
Sbjct: 749 VIGMAELLRDTDLTAQQQEFIDIIRNSGSNLLAIINDILDFSKIESGKFELELQPFNLQT 808

Query: 448 VVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVG 506
            +++ L   +  ++ K + L   +  DVP  ++GDV R +QI+ NL+ NA+KFT  G V 
Sbjct: 809 CLENCLDLMSTRAIAKPIYLSYILDPDVPHHLMGDVTRFQQIMLNLLGNAVKFTNRGDVS 868

Query: 507 IKLYVVP 513
           + +  VP
Sbjct: 869 LWVQKVP 875


>gi|430004422|emb|CCF20217.1| Sensor protein [Rhizobium sp.]
          Length = 1223

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 106/164 (64%), Gaps = 6/164 (3%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL + +   E   RAK + LA MSHEIR+P+ GV+ MAE+L+ + LD  Q+  + 
Sbjct: 665 KEREAELTRLVERAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSDLDTRQKTFID 724

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILML 466
           +++ SG+ +L +INDILD SK+++G MKL  A F P E ++ V   L ++AA     L++
Sbjct: 725 IIVKSGNALLTIINDILDFSKIDAGQMKLRKAPFDPVEAIEDVATLLSSSAAEKDIELIV 784

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
            GD +  V   V+GD  R RQI+TNL+ NA+KFT +G V I L+
Sbjct: 785 RGDAS--VKETVLGDAGRFRQIITNLVGNAVKFTEKGHVFIDLH 826



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 22/158 (13%)

Query: 844  PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
            P   +A  P  +  P   +L+ EDN++N +V   +++  G   ++V NG +AV A Q ++
Sbjct: 1078 PVEGAASTPVVRSLPALDVLVAEDNEVNQIVFTQILQGTGWRFEIVENGAKAVEAWQEKD 1137

Query: 904  YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
              LILMDV MPVM+G +AT+ IR  E         +AG                +PII +
Sbjct: 1138 PALILMDVSMPVMNGHQATQKIRELE--------KQAG--------------GHVPIIGV 1175

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            TA+AL    E C A GMD ++SKP++ + L++ ++ + 
Sbjct: 1176 TAHALESDKELCLAAGMDDYMSKPISPELLEQKIKAWL 1213



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 4/85 (4%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           D D+  TV I     DTG+GIP+  L ++F K+ QV     R++ GTGLGLAI   LVEL
Sbjct: 832 DTDMMLTVRIE----DTGLGIPDEKLKSVFEKFSQVDTSSTRRHEGTGLGLAITAGLVEL 887

Query: 643 MGGRLTVTSKVHCGSTFTFILPYQV 667
            GG + VTS+V  GS FT  LP+ V
Sbjct: 888 FGGHIEVTSEVGRGSVFTVHLPFPV 912


>gi|424896358|ref|ZP_18319932.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
 gi|393180585|gb|EJC80624.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
          Length = 1126

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/207 (39%), Positives = 120/207 (57%), Gaps = 10/207 (4%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           +  VF   GE     ++ MD T  +   +    L  ++   K++E EL   +   E   R
Sbjct: 535 ISTVFHVGGE----RWVNMDAT--ISAGQHWVALFTDVTELKSREEELRHLLSRAEAADR 588

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD 
Sbjct: 589 AKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKSGNALLTIINDILDF 648

Query: 429 SKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           SK+++G MKL  A F   E V+ V  L ++ A+ + I +L    A D+P  VIGD  R R
Sbjct: 649 SKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLV-RAAPDLPAAVIGDAGRFR 707

Query: 487 QILTNLISNAIKFTPEGKVGIKLYVVP 513
           QI+TNL+ NA+KFT  G V + +   P
Sbjct: 708 QIVTNLVGNAVKFTERGHVFVDVGFEP 734



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 22/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN++N +V   +++  G S  VVNNG EAV A +     +I+MDV MPVM+G +A
Sbjct: 997  VLVAEDNEVNQIVFTQILQGTGLSFLVVNNGEEAVAAWERHTPRIIMMDVSMPVMNGHQA 1056

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T+ IR  E                           R+PII +TA+AL    E C   GMD
Sbjct: 1057 TQTIRERE----------------------KGQGHRVPIIGVTAHALESDRELCLDAGMD 1094

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP++ + L+E + Q+ 
Sbjct: 1095 DYMSKPISPELLEEKIRQWL 1114



 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 47/73 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP   L T+F K+ QV A   R++ GTGLGLAI   LV+L GG L V S+   
Sbjct: 746 IEDTGIGIPTEKLETVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGK 805

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 806 GSVFTVTLPFAVA 818


>gi|424885547|ref|ZP_18309158.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2012]
 gi|393177309|gb|EJC77350.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2012]
          Length = 1131

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 12/200 (6%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           +  VF   GE     ++ MD T  +   +    L  ++   K++E EL   +   E   R
Sbjct: 540 ISTVFHVGGE----RWVNMDAT--ISAGQHWVALFTDVTELKSREEELRHLLSRAEAADR 593

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD 
Sbjct: 594 AKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKSGNALLTIINDILDF 653

Query: 429 SKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           SK+++G MKL  A F   E V+ V   L + AA     L++    A D+P  VIGD  R 
Sbjct: 654 SKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRA--APDLPAAVIGDAGRF 711

Query: 486 RQILTNLISNAIKFTPEGKV 505
           RQI+TNL+ NA+KFT  G V
Sbjct: 712 RQIVTNLVGNAVKFTERGHV 731



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 22/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN++N +V   +++  G S  VV NG EAV A +     +I+MDV MPVM+G +A
Sbjct: 1002 VLVAEDNEVNQIVFNQILQGTGLSFLVVANGEEAVAAWERHTPRIIMMDVSMPVMNGHQA 1061

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T+ IR  E                           R+PII +TA+AL    E C   GMD
Sbjct: 1062 TQTIRERE----------------------KGQGHRVPIIGVTAHALESDRELCLDAGMD 1099

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP++ + L+E + Q+ 
Sbjct: 1100 DYMSKPISPELLEEKIRQWL 1119



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 46/73 (63%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DT IGIP   L ++F K+ QV A   R++ GTGLGLAI   LV+L GG L V S+   
Sbjct: 751 IEDTDIGIPSEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGK 810

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 811 GSVFTVNLPFAVA 823


>gi|238786887|ref|ZP_04630688.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC
           33641]
 gi|238725255|gb|EEQ16894.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC
           33641]
          Length = 1054

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 99/138 (71%), Gaps = 1/138 (0%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LATMSHEIR+PL G +   E+LS T+L+ +QRQ +  + S+  ++LQ+I+DILD+SK+E
Sbjct: 480 FLATMSHEIRTPLYGALGTLELLSLTQLNNQQRQYVDRIESASQMLLQIISDILDISKIE 539

Query: 433 SGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G ++L+ ++F PRE+V+    T A  + +K L+L   IA D+P  VIGD  RIRQIL N
Sbjct: 540 AGQLQLDKSEFNPRELVQECTGTYAGMAHRKGLLLFSIIATDIPERVIGDPARIRQILNN 599

Query: 492 LISNAIKFTPEGKVGIKL 509
           LISNAIKFT  G V ++L
Sbjct: 600 LISNAIKFTEIGTVVVRL 617



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 27/163 (16%)

Query: 838  DRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
            +R+      + + VP T P    +IL+ EDN +N +  K  +++LG  + + ++G EA+ 
Sbjct: 805  ERLHHGVQCTKSPVP-TLPHFNLRILVAEDNPLNQVTLKGQLEKLGCEVTIADDGEEALA 863

Query: 898  AVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR 957
                  +D+++ DV MP ++G +  R +R                          N    
Sbjct: 864  LWDISPHDMVMTDVNMPYLNGYELARKLR--------------------------NEGVT 897

Query: 958  IPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             PII +TANA+ +    C   GM++++ KP+  ++L E L ++
Sbjct: 898  APIIGVTANAMRDEERRCVEAGMNAWLVKPIELKELAELLRKH 940



 Score = 45.8 bits (107), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V D+G+GI +     LF  +  + A+     GG GLG++IC +L ELM  ++ + S+  
Sbjct: 632 EVCDSGVGIDKAEQEKLFTPFYMIDAER-NMAGGAGLGMSICARLAELMDTKIQLRSEPQ 690

Query: 655 CGSTFT 660
            GS F+
Sbjct: 691 IGSQFS 696


>gi|320102584|ref|YP_004178175.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
            43644]
 gi|319749866|gb|ADV61626.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
            43644]
          Length = 1293

 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 190/443 (42%), Gaps = 90/443 (20%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V D+GIGIP+   P LF+ + Q+ A   R+ GGTGLGLAI ++LVE MGG + V ++   
Sbjct: 896  VEDSGIGIPDAQKPRLFQAFQQLDAAGHRRTGGTGLGLAITRKLVEKMGGTIHVENRPGG 955

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGF-------------FQFQP 702
            GS F F +   ++P+E  +  P D   +A   +  D     F               ++P
Sbjct: 956  GSRFVFNI---IAPLEFQA--PSDPKTIATASTGGDRAGTEFRTAATAALLGRRVLAYEP 1010

Query: 703  R-----TLGSLFSSNGTS-----RSKKLLPNS-------IGFASAHKVNGFSETSYSFPS 745
                   LG+L  S G S     ++  LL  S       I  ++  K     E ++    
Sbjct: 1011 HEAGRAMLGNLADSLGLSYVGVDQADDLLAQSRREDYDVILISTGPKARDGLELAHRLRG 1070

Query: 746  --NNRQKETAPLEDACSVAEVAETLSEPESSFSHSP-EPENETEVSRGKQCHVETTSWFQ 802
              N+R +   P     ++A V     + E SF++ P +      + R     V T     
Sbjct: 1071 ELNDRPRVQPP--HLVALAPV-----QGEDSFTNDPFDARLVKPLRRDAMIRVLTALLL- 1122

Query: 803  NPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKI 862
                     S ++R M   +    P    ++   P   S + +S     P    +   K+
Sbjct: 1123 -------DRSASSRRMGTPTPLTSPTISTDI--VPATASSAATSEFRFDPTLGQRRPLKV 1173

Query: 863  LLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKAT 922
            L+ EDN +N +V   M+++LG+   + N+G E + A+  Q +DL+LMDV MP +DGL+ T
Sbjct: 1174 LIAEDNAVNRVVMSRMLERLGYQPHLANDGPETLEAILNQPFDLVLMDVQMPKLDGLEVT 1233

Query: 923  RLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP------IIAMTANALSESAEECF 976
            R +R                             +R+P      I+A+TANA  E    C 
Sbjct: 1234 RAVR-----------------------------RRLPLGQQPIIVALTANATREDRTACL 1264

Query: 977  ANGMDSFVSKPVTFQKLKECLEQ 999
              GMD F+SKP+    L   LE+
Sbjct: 1265 EAGMDDFLSKPIRPGDLVHLLER 1287



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 100/158 (63%), Gaps = 2/158 (1%)

Query: 350 QKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
           Q+  E EL       EE  RAK + LATMSHEIR+P+  VV M E+L +T L  EQR+  
Sbjct: 711 QQMAEVELRVAKLQAEEANRAKSVFLATMSHEIRTPMNAVVGMTELLLDTPLTPEQREFT 770

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLE 467
             + +SG+ +L LINDILDLSK+ESG ++LE    R R V++  L+  AA    K L L 
Sbjct: 771 ETIRASGNQLLGLINDILDLSKIESGRVELEEGPVRLRLVIERCLELVAARAHAKGLELA 830

Query: 468 GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
             +   +P  + GD LR+RQILTNL+SNA+K+T  G+V
Sbjct: 831 ARLDGTLPEVIRGDDLRLRQILTNLLSNAVKYTDTGEV 868


>gi|344344646|ref|ZP_08775507.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
           984]
 gi|343803810|gb|EGV21715.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
           984]
          Length = 1400

 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 121/418 (28%), Positives = 180/418 (43%), Gaps = 86/418 (20%)

Query: 258 DILGKTDVEIFSGAGVKESQDFKREVLE-----KGLPAKREITFETELF----GSKTFLI 308
           D++G+TD E+     +   ++  R ++      + LPA   +  E ++      ++T L 
Sbjct: 642 DLVGRTDAELLD---IDPGEEPARSLMADERRAQFLPAGENLAREHDVRLANGETRTLLT 698

Query: 309 YVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETM 368
              P++      IG   + +D++   RKR + A LRE  A  KA     N   +  +   
Sbjct: 699 KKYPIYDHDQRLIGTGTLSIDIS--ARKRAEDA-LRETNAALKASIERANALANRAKMAS 755

Query: 369 RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           RAK + L+ MSHEIR+PL GV+ M  +L  + L  +Q++ L +   SG+ +L++INDILD
Sbjct: 756 RAKSRFLSNMSHEIRTPLNGVIGMLGLLHESPLSADQQRYLEIAQHSGEGLLKIINDILD 815

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
            SKV       EA K                 L++I    G++ DD              
Sbjct: 816 FSKV-------EAGKL---------------ELERIDFDLGELLDD-------------- 839

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQT 547
                ++       E  + +     P+ P A  G     +  Q  T+ V           
Sbjct: 840 ----FVATMALHAHEKTLELTCTAAPDIPTALRG--DPGRVLQILTNLVG---------- 883

Query: 548 ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
               N     +HGE                    +D D    V +R  V DTGIGIP + 
Sbjct: 884 ----NAIKFTEHGE-------------VAVRATLLDCDAH-QVRLRLAVRDTGIGIPRDK 925

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
              LF  + QV   + R+YGGTGLGLAI KQLVELMGG L + S +  GS F   LP+
Sbjct: 926 RERLFHGFSQVDPSNTRRYGGTGLGLAITKQLVELMGGELGLESTLGQGSIFWCDLPF 983



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 84/151 (55%), Gaps = 21/151 (13%)

Query: 852  PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
            P  + +   ++LL +DN  N  VA  ++  LG   D V+NG + + A++ ++YDL+L+DV
Sbjct: 1140 PTQRARHPARLLLADDNLTNQQVALGILGHLGFDADCVSNGRQVLEALEARHYDLLLLDV 1199

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MP++DGL+ TR IR                    P+ G  N  + IPIIAMTA+AL E 
Sbjct: 1200 QMPLLDGLETTRHIRD-------------------PAQGLLN--RDIPIIAMTAHALEED 1238

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             E C   GM+ +++KP+  + L   LEQ+ P
Sbjct: 1239 RERCLHAGMNDYLAKPIDRKALAAALEQWLP 1269



 Score = 44.7 bits (104), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 34/162 (20%)

Query: 850  EVPETKPKPKPK-----ILLVEDNKINVMVAKSMMKQLGHSIDVVNNG---VEAVH--AV 899
            E  + +P+P  +     +L+V+DN+ N  +  + +   G ++    +G   +E +H    
Sbjct: 990  EAEQHRPQPSARLRGARVLVVDDNRHNRELIAAQLSDWGLTVAEAGDGDQALEHLHEGVA 1049

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
            Q   + + L+DV MP MDGL     IR                  A P+   +       
Sbjct: 1050 QEHPFTIALIDVNMPDMDGLTLGEAIR------------------AEPTLAGT------A 1085

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            ++ MTA  ++  AE C  + +   ++KP+  ++L   LEQ  
Sbjct: 1086 LVMMTALGIAREAERCARHALGLQLTKPMRQRELLATLEQTL 1127


>gi|449495060|ref|XP_004159723.1| PREDICTED: histidine kinase 1-like [Cucumis sativus]
          Length = 1222

 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 158/325 (48%), Gaps = 48/325 (14%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEIL-SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSK 430
           Q LA MSHE+R+P+  V+ + +IL  +  L+ EQ   +  +      +L+L+N+ILDLSK
Sbjct: 509 QFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSK 568

Query: 431 VESGVMKLEAAKF-RPREVVKHV----LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           VESG + LE A+F   RE+   V    +Q    +++ +L    D++DD+P  V GD  R+
Sbjct: 569 VESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVL----DLSDDMPKFVRGDSGRV 624

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
            QI TNLISN+IKFT  G + ++ +           LK+  K        + ++K +  +
Sbjct: 625 VQIFTNLISNSIKFTTTGHIILRGWCE-----TSNTLKEMGKF------CIDQKKSRFPN 673

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
           +T   Q+G H K                      N+  +D + T+W   D  DTG GI  
Sbjct: 674 RTKMKQHGEHAK----------------------NAFKKDNKMTLWFELD--DTGCGIDS 709

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
           +   ++F  + Q      R +GGTGLGL I + LV  MGG + V  K   G+   F   Y
Sbjct: 710 SKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRF---Y 766

Query: 666 QVSPIEENSDDPDDLSDMADQDSVT 690
            V     +S D     D A  ++V 
Sbjct: 767 LVLSTPVDSTDHHCQFDFAKHNAVV 791



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 34/158 (21%)

Query: 846  SSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ--- 902
            S S  V   K     +ILL ED  +   V   M++++G  +    +G++AV A+      
Sbjct: 1073 SHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVEALTAMLSA 1132

Query: 903  ---------NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
                      YDLILMD  MP MDG +AT+ IR  E                    G+S 
Sbjct: 1133 EEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLE-------------------VGTSL 1173

Query: 954  HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
            H   IPI+A+TA+A+S    +C   GMD++++KP+ ++
Sbjct: 1174 H---IPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYK 1208


>gi|449456825|ref|XP_004146149.1| PREDICTED: histidine kinase 1-like [Cucumis sativus]
          Length = 1221

 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 158/325 (48%), Gaps = 48/325 (14%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEIL-SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSK 430
           Q LA MSHE+R+P+  V+ + +IL  +  L+ EQ   +  +      +L+L+N+ILDLSK
Sbjct: 508 QFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSK 567

Query: 431 VESGVMKLEAAKF-RPREVVKHV----LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           VESG + LE A+F   RE+   V    +Q    +++ +L    D++DD+P  V GD  R+
Sbjct: 568 VESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVL----DLSDDMPKFVRGDSGRV 623

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
            QI TNLISN+IKFT  G + ++ +           LK+  K        + ++K +  +
Sbjct: 624 VQIFTNLISNSIKFTTTGHIILRGWCE-----TSNTLKEMGKF------CIDQKKSRFPN 672

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
           +T   Q+G H K                      N+  +D + T+W   D  DTG GI  
Sbjct: 673 RTKMKQHGEHAK----------------------NAFKKDNKMTLWFELD--DTGCGIDS 708

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
           +   ++F  + Q      R +GGTGLGL I + LV  MGG + V  K   G+   F   Y
Sbjct: 709 SKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRF---Y 765

Query: 666 QVSPIEENSDDPDDLSDMADQDSVT 690
            V     +S D     D A  ++V 
Sbjct: 766 LVLSTPVDSTDHHCQFDFAKHNAVV 790



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 34/158 (21%)

Query: 846  SSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ--- 902
            S S  V   K     +ILL ED  +   V   M++++G  +    +G++AV A+      
Sbjct: 1072 SHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVEALTAMLSA 1131

Query: 903  ---------NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
                      YDLILMD  MP MDG +AT+ IR  E                    G+S 
Sbjct: 1132 EEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLE-------------------VGTSL 1172

Query: 954  HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
            H   IPI+A+TA+A+S    +C   GMD++++KP+ ++
Sbjct: 1173 H---IPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYK 1207


>gi|343495189|ref|ZP_08733373.1| histidine kinase [Vibrio nigripulchritudo ATCC 27043]
 gi|342823557|gb|EGU58170.1| histidine kinase [Vibrio nigripulchritudo ATCC 27043]
          Length = 1030

 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 154/323 (47%), Gaps = 75/323 (23%)

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           E   +AK   LATMSHEIR+P+ G++ M ++L+ T+++REQ+++L  +  S   +L +IN
Sbjct: 397 ESATKAKANFLATMSHEIRTPMNGIIGMIDLLNTTRVNREQQRMLKTVRESSFSLLNIIN 456

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVL 483
           DILD SK+E+G + +E              QTA                          L
Sbjct: 457 DILDFSKIEAGKLDVE--------------QTA--------------------------L 476

Query: 484 RIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEG--LKQKSKAYQSATDAVKEEKH 541
            +R+ L N++S          +  +LY+ PE P   +G  ++ +   +    +A+K    
Sbjct: 477 PLRETLENVVSTLSPSAENAGIIFQLYIAPELPEEVQGDPVRLRQILFNIIGNAIK---- 532

Query: 542 QPKSQTASDQNGFHDK--KHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDT 599
                       F  K  + GE Y +            H   + +D    + ++ D+ D 
Sbjct: 533 ------------FSSKLSRRGEVYIE-----------VHPYFISKD---EITVQFDIRDN 566

Query: 600 GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTF 659
           GIGI ++ +  LF  + Q  +D  R++GGTGLGL+I K L ELMGG ++V S+V  G+TF
Sbjct: 567 GIGIHQDHIDNLFTPFTQAESDTTRRFGGTGLGLSISKHLTELMGGEISVRSEVGEGTTF 626

Query: 660 TFILPYQVSPIEENSDDPDDLSD 682
           +  L +  S    NS  P  ++D
Sbjct: 627 SLHLTFPYSSQPGNSVKPVQIAD 649



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 22/143 (15%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            K  IL+ EDN +N  V K  +K LG+   + ++G++A    +   +DL+L D  MP  DG
Sbjct: 783  KGYILVAEDNPVNQEVIKKQLKALGYDCALADDGLQAQAIYEQHEFDLVLTDCHMPECDG 842

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
             + T  +R            +  IE+           +RIPIIA+TANA+   A++C   
Sbjct: 843  YELTTALR------------QKQIEKG----------RRIPIIAVTANAMIGEAKKCLTA 880

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GMD ++ KP+  +KLK+ L  + 
Sbjct: 881  GMDDYLPKPIELEKLKKMLSDWI 903


>gi|410663232|ref|YP_006915603.1| GacS [Simiduia agarivorans SA1 = DSM 21679]
 gi|409025589|gb|AFU97873.1| GacS [Simiduia agarivorans SA1 = DSM 21679]
          Length = 905

 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 189/415 (45%), Gaps = 55/415 (13%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            E  V     V DTG GIPE+    LF+ + Q+   ++RK+GGTGLGLA+ K LV+ M G 
Sbjct: 395  ETQVEANIHVKDTGEGIPESDRKKLFQAFSQLDTSNSRKHGGTGLGLAVSKGLVKRMKGE 454

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLG 706
            + V S    GS F F   + V   + + ++   L + +   ++++++     Q Q   +G
Sbjct: 455  IGVESNAEGGSLFWFTATFGVD-TQGDEENKQHLLEGSHFVALSNNMPLA-HQLQ-EIVG 511

Query: 707  SLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAE 766
               S  G  +    +P  IG    H  N     +  +  +  Q++   L +   + +  +
Sbjct: 512  ---SERGKLQIMTGIPELIGLVKNHMQNNQPIEAVFYDIDPHQEKLLDLHNLRELVDQLK 568

Query: 767  TLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNE 826
                 ++ F  +P    + E         ++  + + P T        NR +    K   
Sbjct: 569  RFYACKTIFLCTPSARRQLE----HHLTPDSQEYLEKPVT-------LNRTLHLLRKELA 617

Query: 827  PQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSI 886
            P K        +  S   +SS  E        KP+IL V+DN  N+ +   ++  LG  +
Sbjct: 618  PLK--------EETSIGRNSSPYE-------NKPRILAVDDNPANLQLVGELLNGLGAEV 662

Query: 887  DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAM 946
             + ++G +A+   + + +D+I MD+ MPVMDGL+AT++IRS E                 
Sbjct: 663  ALASDGKQAIELAENKLFDMIFMDLQMPVMDGLEATKIIRSRE----------------- 705

Query: 947  PSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
              SG     +R PI+A+TA+A++E   +    GMD ++SKPV+  +L   + ++ 
Sbjct: 706  --SGK----RRTPIVALTAHAMAEQKSQLLLAGMDDYLSKPVSEAQLAHIINRWL 754



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 99/167 (59%), Gaps = 2/167 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           LRE +   + +  EL+       E  R K   LA  SHEIR+PL G++    +L  T++ 
Sbjct: 220 LRETLETIEIQNIELDLARKEAVEASRVKSDFLANTSHEIRTPLNGIIGFTSLLLKTQVS 279

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASL 460
            +QR+ L  +  S   +L +IND+LD SK+ESG ++L+    + R+V++  +Q  A A+ 
Sbjct: 280 DQQREYLRTIQHSSQGLLTIINDVLDFSKIESGRLQLDYIPMQLRQVIEESMQIMAPAAH 339

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           +K L L   +   +P  ++GD LR++Q++TNLISNAIKF+  G + +
Sbjct: 340 EKGLQLILHVDPGLPANLLGDPLRMKQVMTNLISNAIKFSSGGNIEV 386


>gi|424911053|ref|ZP_18334430.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
 gi|392847084|gb|EJA99606.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
          Length = 1224

 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/161 (44%), Positives = 105/161 (65%), Gaps = 2/161 (1%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL + +   E   RAK + LA MSHEIR+P+ GV+ MAE+L+ + LD  Q+    
Sbjct: 653 KMREGELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTD 712

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEG 468
           +++ SG+ +L +INDILD SK+E+G MKL +  F P E V+ V+   ++A+L+K + L  
Sbjct: 713 IIVKSGNALLTIINDILDFSKIEAGQMKLRSVSFDPAEAVEDVVSLLSSAALEKNIELVV 772

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            I   V  +VIGD  R RQI+TNL+ NA+KFT  G V ++L
Sbjct: 773 RIDPSVFGKVIGDAGRFRQIVTNLVGNAVKFTETGHVLVEL 813



 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 23/156 (14%)

Query: 849  AEVPETKPKPKPK---ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYD 905
            AEVP    + +P    +L+ EDN +N +V   +++Q G    +V NG +AV A +  N  
Sbjct: 1074 AEVPTVSVRLRPSLIDVLVAEDNDVNQIVFTQILQQTGLRFLIVGNGKKAVQAWEEYNPA 1133

Query: 906  LILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965
            +ILMDV MPVM+G +AT+ IR+ E      AAAE                + +PII +TA
Sbjct: 1134 IILMDVSMPVMNGHQATQAIRTAE-----LAAAEG---------------RHVPIIGVTA 1173

Query: 966  NALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            +      + C   GMD ++SKP++ + L++ + Q+ 
Sbjct: 1174 HTQDADRDLCLQAGMDDYLSKPISPEILEDKIAQWL 1209



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 4/91 (4%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           EA + +R  V D+GIGIP + L T+F K+ QV +   R++ GTGLGLAI   LV L  G+
Sbjct: 822 EAILSLR--VEDSGIGIPSDKLETIFDKFSQVDSSATRRHEGTGLGLAITVGLVGLFNGK 879

Query: 647 LTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
           + V S+V  GS+F   +P+Q++  E   D P
Sbjct: 880 IDVVSEVGKGSSFEVNIPFQMT--ERRRDVP 908


>gi|307719098|ref|YP_003874630.1| two-component system sensor histidine kinase [Spirochaeta thermophila
            DSM 6192]
 gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta
            thermophila DSM 6192]
          Length = 776

 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 177/421 (42%), Gaps = 67/421 (15%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            +   W+   V DTGIGIPEN    LFR + Q+     R++GGTGLGLAI K LVE+M G 
Sbjct: 277  KGVAWVAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGE 336

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSD-----MADQDSVTDDVTAGFFQ-F 700
            + V SK   GS+F F+LP    PI E+ + P  L +     + +   +T  V   + Q +
Sbjct: 337  IGVRSKEGEGSSFWFLLPL---PIVESYEPPVSLGEVGSLLLVEDYPLTRKVLHRYLQRY 393

Query: 701  QPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACS 760
             PR      +S G    +K+       A   ++        + P  +  +  + +    S
Sbjct: 394  FPRIDE---ASTGAEALRKMRER----AERGEIYDLVLVDLTLPGMDGWQFASEVNADRS 446

Query: 761  VAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQ 820
            + +    L  P               +  G +  ++   WF     +     +  R + +
Sbjct: 447  INDTRMVLMSP---------------MGEGAEAKMKLLKWFDAYLAKPVRKDDLYRTVAK 491

Query: 821  TSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMK 880
                    +  E  E  +   ++P+ +   +          IL+ ED+ +N  +  +++ 
Sbjct: 492  VVNEEMELEAVEEAEGTEGGEETPADAGNYL----------ILVAEDHIVNQELFLTILS 541

Query: 881  QLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940
            +LG+ +++  NG EAV        DLI MDV MP M+G  A R++R            E 
Sbjct: 542  RLGYRVELAGNGKEAVEKGLALKPDLIFMDVQMPEMNGYDAARVLR------------EK 589

Query: 941  GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            G E               P+IA+TA+A  E  E   A GM  F+ KP   + L   L+++
Sbjct: 590  GYEG--------------PVIAVTASAFREDRERALAAGMSDFLPKPFKKKDLLPVLQKW 635

Query: 1001 F 1001
             
Sbjct: 636  L 636



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 117/204 (57%), Gaps = 24/204 (11%)

Query: 314 FSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM 373
           FS+ GE +       D+TDQ    E + K REE A++  +                  + 
Sbjct: 93  FSRGGEVL---LGAFDITDQKVTEEHLRKEREE-AIRSVQSK---------------SRF 133

Query: 374 LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433
           LA MSHEIR+PL  ++ M E+L +T+LD EQR  +  +  SG+ +L LINDILD SK+E+
Sbjct: 134 LANMSHEIRTPLHTILGMTELLEDTRLDEEQRDYVQQIRFSGEALLALINDILDYSKIEA 193

Query: 434 GVMKLEAAKFRPREVVKHVLQTAAASLQ---KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           G + +E  +F   EVV+  +     SLQ   K L +  DI ++VP +V GD LRIRQIL 
Sbjct: 194 GKLPMEIIEFDLYEVVEQAV--GMVSLQAHKKHLEVVVDIGEEVPRKVKGDPLRIRQILV 251

Query: 491 NLISNAIKFTPEGKVGIKLYVVPE 514
           NL +NA+KFT +G V  ++ +V E
Sbjct: 252 NLANNAVKFTEKGHVFCRVQLVQE 275


>gi|86358747|ref|YP_470639.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86282849|gb|ABC91912.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 1133

 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 10/199 (5%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           +  VF   GE     ++ M+ T  V   +    L  ++   K++E EL + +   E   R
Sbjct: 540 ISTVFHVGGE----RWVNMEAT--VSSGQHWVALFTDVTELKSREEELRQLLSRAEAADR 593

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD 
Sbjct: 594 AKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFIDIIVKSGNALLTIINDILDF 653

Query: 429 SKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           SK+++G MKL  A F   E V+ V  L ++ A+ + I +L    A D+P  VIGD  R R
Sbjct: 654 SKIDAGQMKLRKAAFDLVEAVEDVATLLSSHAAEKNIELLV-RAAPDLPAAVIGDAGRFR 712

Query: 487 QILTNLISNAIKFTPEGKV 505
           QI+TNL+ NA+KFT  G V
Sbjct: 713 QIVTNLVGNAVKFTERGHV 731



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 22/151 (14%)

Query: 851  VPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMD 910
            VP+ +      +L+ EDN++N +V   +++  G S  VV NG EAV A +     +I+MD
Sbjct: 993  VPQKRADEFVDVLVAEDNEVNQIVFTQILQSSGLSFLVVKNGEEAVAAWESHTPRIIMMD 1052

Query: 911  VCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970
            V MPVM+G +ATR IR  E                           R+PII +TA+AL  
Sbjct: 1053 VSMPVMNGHEATRTIRERE----------------------KGQGHRVPIIGVTAHALES 1090

Query: 971  SAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
              E C   GMD ++SKP++ + L+E + Q+ 
Sbjct: 1091 DRELCLDAGMDDYMSKPISPELLEEKIRQWL 1121



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 46/73 (63%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP   L ++F K+ QV A   R++ GTGLGLAI   LV+L GG +   S+   
Sbjct: 751 IEDTGIGIPREKLDSVFEKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYINAESEWGR 810

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 811 GSVFTVNLPFAVA 823


>gi|308126279|ref|ZP_05908879.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308107066|gb|EFO44606.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 882

 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 182/406 (44%), Gaps = 69/406 (16%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + D+GIGI  + L T+F  + Q     +R++GGTGLGLAIC+QLV +MGG+L  TS    
Sbjct: 540 IKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATSTKGV 599

Query: 656 GSTFTFILPYQVSPI-EENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGT 714
           G+ F F +  +  P+   +SD       + D  +  + +       Q + +G     N  
Sbjct: 600 GTCFGFSIEVEALPLFGWHSDVVKRGLFICDNYAYAEQIVQECRLAQIKLVGV----NSL 655

Query: 715 SRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESS 774
           S +K L                 +    F  N+ Q +     D+C ++E+AE        
Sbjct: 656 SEAKAL---------------DEDFDVIFLCNDGQMDI----DSC-LSELAEVY------ 689

Query: 775 FSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQ 834
                      +V R   C    TS + N       H+   +  +     +  +++ +++
Sbjct: 690 -----------DVRRVVVCQHHLTSSYTNA---ENVHAVLTQPFLGNRFKHAIEELAKLE 735

Query: 835 EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
           +   R + +  +S AE      +   +IL+ EDN +N  +A   + + G+   + +NG E
Sbjct: 736 KNTLRDNVTNIASRAE--SKISRTHRRILIAEDNLMNQKIASFFLDKAGYDYLITSNGQE 793

Query: 895 AVHAV-QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
           A+ A+ + + +D ILMD  MPVMDGL AT+ IR +E         + G            
Sbjct: 794 ALDAITKGEQFDAILMDCMMPVMDGLTATKEIRRWEK--------KVGC----------- 834

Query: 954 HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
             K+  IIA+TA+ L E    CFA GMD+++ KP    +L E   +
Sbjct: 835 --KKTTIIALTASVLEEDIHNCFAAGMDAYLPKPYKSNQLFELFNE 878



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 107/168 (63%), Gaps = 13/168 (7%)

Query: 349 VQKAKETELNKTIHITEETM---RAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           V + K+ + ++ +H  E  +   RAK + LA MSHEIR+PL G++ M EILS ++L   Q
Sbjct: 358 VVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELSPHQ 417

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH---VLQTAAASLQ 461
           ++++  + +S   +L L+NDILDLSK+ESG ++L   +   REVV     + Q+ A S Q
Sbjct: 418 QEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKATSKQ 477

Query: 462 KILMLEGDIADD--VPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
               LE DI+ D  +P  V+ D  RI+QI+TNL+SNA+KFT +G + +
Sbjct: 478 ----LELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYISV 521


>gi|388258432|ref|ZP_10135608.1| multi-sensor hybrid histidine kinase [Cellvibrio sp. BR]
 gi|387937944|gb|EIK44499.1| multi-sensor hybrid histidine kinase [Cellvibrio sp. BR]
          Length = 629

 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 157/303 (51%), Gaps = 26/303 (8%)

Query: 215 QILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHE----EDILGKTDVEIFSG 270
           Q+L  A+ F+H +L   P    ++D + RY      +   H      D +GK+D++    
Sbjct: 92  QVLTSANYFMH-LLDQLPDRFYYKDAQSRYLGGNRAWREQHHIENMADWVGKSDLDSPRF 150

Query: 271 AGVKESQDFKRE--VLEKGLPAKREITFETELFGSKTFLIYVE-PVFSKSGETIGVNYMG 327
                 + F+ E  +L+ G+  +     E    GS  +   ++ PV+    + +G+  + 
Sbjct: 151 TPELAQKIFREEQVMLQSGIALRTREKVENA-DGSIQYSDSIKTPVYDNHNQLVGLVGLT 209

Query: 328 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTG 387
            D+T  V   + +A  +E+       ++                  LA MSHEIR+P+ G
Sbjct: 210 RDITQLVETEQALAHAKEQAEEAAKAKSAF----------------LAVMSHEIRTPMNG 253

Query: 388 VVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447
           V+  A +L++T+L  EQRQL+  + S G+ +L +INDILD SK+E+G ++LE   F  +E
Sbjct: 254 VIGCASLLADTQLTEEQRQLVRTIQSCGEGLLVIINDILDYSKIEAGQIQLEMRPFHLQE 313

Query: 448 VVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVG 506
           +++  L+    S Q K L L+  +ADDVP+ V GD  RIRQ+L NLI NAIKFT  G V 
Sbjct: 314 LIEDTLELFKKSAQNKNLGLQYVLADDVPLHVEGDSARIRQVLINLIGNAIKFTDTGAVT 373

Query: 507 IKL 509
           + +
Sbjct: 374 LTI 376



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 30/161 (18%)

Query: 843 SPSSSSAEVP-ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQ 900
           S +  +  +P E KP+   ++L+VEDN +N M+   M+ +LG++ I  V +G EAV   +
Sbjct: 485 STTDENTNLPLEIKPR-NTRVLVVEDNSVNKMLIIKMLSKLGYNNITAVADGSEAVDICR 543

Query: 901 CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGN--WDAAAEAGIEQAMPSSGSSNHFKRI 958
               D+ILMD+ M +MDG  AT  IR+ ++     W  A  AG++QA             
Sbjct: 544 EMAIDIILMDIQMRIMDGYTATEKIRAQQNVAGQPWIIALTAGVQQA------------- 590

Query: 959 PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
                        AE  FA GM++F +KP+   +L   L Q
Sbjct: 591 ------------DAERAFACGMNAFATKPIQLLELNNALIQ 619



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 593 RC----DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           RC     V DTGIGIP      LF+ + Q      RKYGGTGLGLAI K++++ MGG + 
Sbjct: 387 RCTLLFKVQDTGIGIPAELQGNLFQVFTQADNSITRKYGGTGLGLAISKKIIQQMGGTIW 446

Query: 649 VTSKVHCGSTFTF 661
           + S    G++F F
Sbjct: 447 LDSTPGLGTSFFF 459


>gi|421614060|ref|ZP_16055129.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica SH28]
 gi|408495267|gb|EKJ99856.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica SH28]
          Length = 843

 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 158/289 (54%), Gaps = 24/289 (8%)

Query: 222 NFLHFVLQNAPVVMGHQDKELRYRFIYN----HFPSLHEEDILGKTDVEIFSGAGVKESQ 277
           + L  +L N P  +  +D + R+  + +     F     +++ G+TD +IF+    + ++
Sbjct: 137 SLLKTLLANIPDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGAR 196

Query: 278 DFKREVLEKGLPAKREITFETELFGSKTFLIYVE-PVFSKSGETIGVNYMGMDVTDQVRK 336
             +  V+E G      +  ET      T+ +  + P+ + +GE IG   +  D+TD  R 
Sbjct: 197 LDELRVIETGEALVDRVERETWPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRS 256

Query: 337 REKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEIL 395
                            E  L++ + + +   R+K + LA MSHEIR+P+  ++ MA++L
Sbjct: 257 -----------------EAALHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLL 299

Query: 396 SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT 455
           S TKLD +Q+  + ++  S + +L+LINDILD SK+E+  ++LE+  F   + ++  L++
Sbjct: 300 SQTKLDPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRS 359

Query: 456 -AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
            +  + +K L L+ DI+ ++P  +IGD  R+RQ+LTNLI NAIKFT  G
Sbjct: 360 FSFKASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHG 408



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 22/139 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ ED   N  V   +++ LGH   + ++G E +   + ++YD++LMD+ MPVMDGL+A
Sbjct: 549  VLVAEDGVTNQHVIAGLLRSLGHKCSIASDGRETLTKWRSESYDVVLMDMHMPVMDGLEA 608

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR  E    W               G+  H    PI+A+TA A+SE A  C   GMD
Sbjct: 609  TRAIRQEE----W---------------GTERH---TPIVALTAAAMSEDAAACREAGMD 646

Query: 982  SFVSKPVTFQKLKECLEQY 1000
            S+++KP+  +KL++ L  Y
Sbjct: 647  SYLTKPIHSRKLRDALTPY 665



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 74/151 (49%), Gaps = 31/151 (20%)

Query: 583 DEDLEAT------------VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
           D DL AT            V +R  V D+GIGIP      +   + Q  A   R++GGTG
Sbjct: 424 DRDLAATPSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTG 483

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI---EENSDDPDDLSDMADQ- 686
           LGL+I +QLVELMGG L + S+V  G+TF+F L   V P     E  D+ +DL   A Q 
Sbjct: 484 LGLSISRQLVELMGGELQLQSEVGVGTTFSFQLKMPVCPASMPNEVDDEEEDLGGPARQR 543

Query: 687 ----------DSVTDD-VTAGFFQFQPRTLG 706
                     D VT+  V AG      R+LG
Sbjct: 544 LAPLHVLVAEDGVTNQHVIAGLL----RSLG 570


>gi|410938354|ref|ZP_11370207.1| 7TM diverse intracellular signaling [Leptospira noguchii str.
           2006001870]
 gi|410786583|gb|EKR75521.1| 7TM diverse intracellular signaling [Leptospira noguchii str.
           2006001870]
          Length = 804

 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 150/336 (44%), Gaps = 71/336 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   I E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 386 KNIVLLKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG 445

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ +GV+  S   +LQ+INDILD SK+E+G + LE   F  R V+  +    
Sbjct: 446 TTKLNEEQKEYVGVLSVSAKSLLQIINDILDFSKIEAGKIILEREVFSIRSVLDEI-HDL 504

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
              L K                                  I F  EGK+ I+ YV  +P 
Sbjct: 505 LFPLAK-------------------------------QKEINFRLEGKLEIQEYVYGDP- 532

Query: 517 FAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPV 576
                L+ +   +  A + +K           + +N                       +
Sbjct: 533 -----LRLRQILWNLAGNGIKFTNRGEVVLKVAQKN-----------------------I 564

Query: 577 SHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAIC 636
           S  N         V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I 
Sbjct: 565 SKDN---------VSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSIT 615

Query: 637 KQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEE 672
           KQLVEL GG L + SK   GS FTF + Y +  + E
Sbjct: 616 KQLVELQGGVLKLESKDGEGSKFTFTIDYDIPSVLE 651



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 23/140 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q  N+D+ILMD+ MP +DG++
Sbjct: 677  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLGNFDIILMDIHMPEVDGIE 736

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ IRS       +  +E+ I                 IIA+TA+ +  + E+  + GM
Sbjct: 737  ATKWIRS------KNQNSESPI-----------------IIALTADVIESNKEKYVSKGM 773

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            +  ++KP+    LK  L+ +
Sbjct: 774  NDCLTKPLDLPILKNTLDFW 793


>gi|222086713|ref|YP_002545247.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221724161|gb|ACM27317.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 1092

 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 144/315 (45%), Gaps = 71/315 (22%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL   +  +E   RAK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + 
Sbjct: 529 KKREAELQLLLARSEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDLDARQKTFID 588

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGD 469
           +++ SG+ +L +INDILD SK+++G M+L  A F                          
Sbjct: 589 IIVKSGNALLTIINDILDFSKIDAGQMRLRKAAFD------------------------- 623

Query: 470 IADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAY 529
                P E + DV         L+S     +P  +  I+L V   P      L    +  
Sbjct: 624 -----PAEAVEDV-------ATLLS-----SPAAEKDIELLVRATPAVPAMVLGDAGRFR 666

Query: 530 QSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEAT 589
           Q  T+ +             +   F ++ H     D +       P+ +G  M       
Sbjct: 667 QIVTNLL------------GNAIKFTERGHVLVEVDSQ-------PIDNGEVM------- 700

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
             +   V DTG+GI +  L ++F K+ QV A   R++ GTGLGLAI   LV+L GG L V
Sbjct: 701 --LTLRVEDTGLGISKEKLDSIFEKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLEV 758

Query: 650 TSKVHCGSTFTFILP 664
            S+   GSTFT  LP
Sbjct: 759 DSEWGKGSTFTVHLP 773



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 20/146 (13%)

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
            P     +L+ EDN++N +V   +++  G    VV NG EAV A       LI+MDV MPV
Sbjct: 955  PVSAIDVLVAEDNEVNQIVFTQILQVTGLRFLVVQNGQEAVDAWLKLRPSLIMMDVSMPV 1014

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            M+G +ATR IR  E        AEAG+           H   +PI+ +TA+AL    + C
Sbjct: 1015 MNGHQATRTIRQLE--------AEAGL---------GCH---VPIVGVTAHALDVDRDMC 1054

Query: 976  FANGMDSFVSKPVTFQKLKECLEQYF 1001
               GMD ++SKP++ + L+  + ++ 
Sbjct: 1055 LEAGMDDYMSKPISPELLEAKVRRWL 1080


>gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
 gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
          Length = 1202

 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/183 (41%), Positives = 119/183 (65%), Gaps = 4/183 (2%)

Query: 332 DQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVS 390
           D+ ++  +MA + ++I+ +K  E EL K +   E   R+K + LA MSHEIR+P+ GVV 
Sbjct: 503 DEEKRALRMAGIHKDISDRKRVEDELKKAMLDAESANRSKSEFLANMSHEIRTPMNGVVG 562

Query: 391 MAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK 450
           M E+LSNT+L  EQ+  +    +S + +L +INDILD SK+E+G ++LE   F   E+V+
Sbjct: 563 MMELLSNTELTPEQQSHMRTARNSAESLLTIINDILDFSKIEAGKLELEEIAFDLAELVE 622

Query: 451 HVLQTAAASL--QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            V    A  +  +K+ +L    A D+P++V GD  R+RQ+L NL+ NA+KFTPEG+V ++
Sbjct: 623 DVTALLAQRVDSEKLELLHNAPA-DLPMQVAGDPTRLRQVLVNLVGNAVKFTPEGEVEVR 681

Query: 509 LYV 511
           + V
Sbjct: 682 MTV 684



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 30/164 (18%)

Query: 838  DRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
            +RISQ+  S++ +           +LLVED+ IN  VA+ M+  LG  +++ N+G E V 
Sbjct: 920  ERISQNNMSATFDAA---------VLLVEDHPINQQVARGMLAGLGCRVEIANDGHEGVR 970

Query: 898  AVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR 957
                  YDL+LMD+ MP MDG + T  IR  E +  W                      R
Sbjct: 971  LFARHRYDLVLMDIQMPGMDGYETTDAIRQMERSERW---------------------PR 1009

Query: 958  IPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             PI+A+TANA+ +  + C A  MD ++SKP++  +LK  + ++ 
Sbjct: 1010 TPIVALTANAMEQDRDRCLAADMDDYLSKPISLDRLKAAMSKWL 1053



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 51/79 (64%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           TV +  +V DTGIGI E   P LFR + Q      R++GGTGLGLAI KQLVELMGG + 
Sbjct: 691 TVTVLTEVRDTGIGIDEAVRPRLFRMFTQADGSTTRRFGGTGLGLAISKQLVELMGGEVG 750

Query: 649 VTSKVHCGSTFTFILPYQV 667
            +S +  GSTF F + + +
Sbjct: 751 FSSVMGQGSTFWFRITFPI 769


>gi|417304364|ref|ZP_12091387.1| sensory box histidine kinase/response regulator [Rhodopirellula
           baltica WH47]
 gi|327539316|gb|EGF25937.1| sensory box histidine kinase/response regulator [Rhodopirellula
           baltica WH47]
          Length = 843

 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 158/289 (54%), Gaps = 24/289 (8%)

Query: 222 NFLHFVLQNAPVVMGHQDKELRYRFIYN----HFPSLHEEDILGKTDVEIFSGAGVKESQ 277
           + L  +L N P  +  +D + R+  + +     F     +++ G+TD +IF+    + ++
Sbjct: 137 SLLKTLLANIPDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGAR 196

Query: 278 DFKREVLEKGLPAKREITFETELFGSKTFLIYVE-PVFSKSGETIGVNYMGMDVTDQVRK 336
             +  V+E G      +  ET      T+ +  + P+ + +GE IG   +  D+TD  R 
Sbjct: 197 LDELRVIETGEALVDRVERETWPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRS 256

Query: 337 REKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEIL 395
                            E  L++ + + +   R+K + LA MSHEIR+P+  ++ MA++L
Sbjct: 257 -----------------EAALHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLL 299

Query: 396 SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT 455
           S TKLD +Q+  + ++  S + +L+LINDILD SK+E+  ++LE+  F   + ++  L++
Sbjct: 300 SQTKLDPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRS 359

Query: 456 -AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
            +  + +K L L+ DI+ ++P  +IGD  R+RQ+LTNLI NAIKFT  G
Sbjct: 360 FSFKASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHG 408



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 22/139 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ ED   N  V   +++ LGH   + ++G E +   + ++YD++LMD+ MPVMDGL+A
Sbjct: 549  VLVAEDGVTNQHVIAGLLRSLGHKCSIASDGRETLTKWRSESYDVVLMDMHMPVMDGLEA 608

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR  E    W               G+  H    PI+A+TA A+SE A  C   GMD
Sbjct: 609  TRAIRQEE----W---------------GTERH---TPIVALTAAAMSEDAAACREAGMD 646

Query: 982  SFVSKPVTFQKLKECLEQY 1000
            S+++KP+  +KL++ L  Y
Sbjct: 647  SYLTKPIHSRKLRDALAPY 665



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 74/151 (49%), Gaps = 31/151 (20%)

Query: 583 DEDLEAT------------VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
           D DL AT            V +R  V D+GIGIP      +   + Q  A   R++GGTG
Sbjct: 424 DRDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTG 483

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI---EENSDDPDDLSDMADQ- 686
           LGL+I +QLVELMGG L + S+V  G+TF+F L   V P     E  D+ +DL   A Q 
Sbjct: 484 LGLSISRQLVELMGGELHLQSEVGVGTTFSFQLKMPVCPASMPNEVDDEEEDLGGPARQR 543

Query: 687 ----------DSVTDD-VTAGFFQFQPRTLG 706
                     D VT+  V AG      R+LG
Sbjct: 544 LAPLHVLVAEDGVTNQHVIAGLL----RSLG 570


>gi|32476458|ref|NP_869452.1| sensory transduction histidine kinase- sensory histidine kinase /
           response regulator hybrid [Rhodopirellula baltica SH 1]
 gi|32447003|emb|CAD78909.1| sensory transduction histidine kinase-putative sensory histidine
           kinase / response regulator hybrid [Rhodopirellula
           baltica SH 1]
          Length = 871

 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 158/289 (54%), Gaps = 24/289 (8%)

Query: 222 NFLHFVLQNAPVVMGHQDKELRYRFIYN----HFPSLHEEDILGKTDVEIFSGAGVKESQ 277
           + L  +L N P  +  +D + R+  + +     F     +++ G+TD +IF+    + ++
Sbjct: 165 SLLKTLLANIPDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGAR 224

Query: 278 DFKREVLEKGLPAKREITFETELFGSKTFLIYVE-PVFSKSGETIGVNYMGMDVTDQVRK 336
             +  V+E G      +  ET      T+ +  + P+ + +GE IG   +  D+TD  R 
Sbjct: 225 LDELRVIETGEALVDRVERETWPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRS 284

Query: 337 REKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEIL 395
                            E  L++ + + +   R+K + LA MSHEIR+P+  ++ MA++L
Sbjct: 285 -----------------EAALHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLL 327

Query: 396 SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT 455
           S TKLD +Q+  + ++  S + +L+LINDILD SK+E+  ++LE+  F   + ++  L++
Sbjct: 328 SQTKLDPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRS 387

Query: 456 -AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
            +  + +K L L+ DI+ ++P  +IGD  R+RQ+LTNLI NAIKFT  G
Sbjct: 388 FSFKASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHG 436



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 22/139 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ ED   N  V   +++ LGH   + ++G E +   + ++YD++LMD+ MPVMDGL+A
Sbjct: 577  VLVAEDGVTNQHVIAGLLRSLGHKCSIASDGRETLTKWRSESYDVVLMDMHMPVMDGLEA 636

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR  E    W               G+  H    PI+A+TA A+SE A  C   GMD
Sbjct: 637  TRAIRQEE----W---------------GTERH---TPIVALTAAAMSEDAAACREAGMD 674

Query: 982  SFVSKPVTFQKLKECLEQY 1000
            S+++KP+  +KL++ L  Y
Sbjct: 675  SYLTKPIHSRKLRDALAPY 693



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 74/151 (49%), Gaps = 31/151 (20%)

Query: 583 DEDLEAT------------VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
           D DL AT            V +R  V D+GIGIP      +   + Q  A   R++GGTG
Sbjct: 452 DRDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTG 511

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI---EENSDDPDDLSDMADQ- 686
           LGL+I +QLVELMGG L + S+V  G+TF+F L   V P     E  D+ +DL   A Q 
Sbjct: 512 LGLSISRQLVELMGGELHLQSEVGVGTTFSFQLKMPVCPASMPNEVDDEEEDLGGPARQR 571

Query: 687 ----------DSVTDD-VTAGFFQFQPRTLG 706
                     D VT+  V AG      R+LG
Sbjct: 572 LAPLHVLVAEDGVTNQHVIAGLL----RSLG 598


>gi|330805289|ref|XP_003290617.1| hypothetical protein DICPUDRAFT_155144 [Dictyostelium purpureum]
 gi|325079256|gb|EGC32865.1| hypothetical protein DICPUDRAFT_155144 [Dictyostelium purpureum]
          Length = 3043

 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 173/373 (46%), Gaps = 56/373 (15%)

Query: 302  GSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTI 361
            G+   ++Y+E  F+    T G             + E +  L  +IA+         K+ 
Sbjct: 2170 GNLVSILYLENNFATGAFTHG-------------RMEILNLLSSQIAISFQNARLFLKSN 2216

Query: 362  HITEETMRAKQ-----------MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGV 410
            H+  +   AK+            ++ MSHE+R+PL  ++   E+L       +Q++LL +
Sbjct: 2217 HLANQAFLAKEDAEKANKAKSDFISNMSHEMRTPLNHIIGAIELLKGFPSTNDQKELLAI 2276

Query: 411  MISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDI 470
               S + +L ++N+ILDLSKVE G  KL    F     ++ ++   + +     +  G  
Sbjct: 2277 SQQSSESLLFMVNNILDLSKVEQGKTKLNLTSFNIVNFLEDIICAISPNAHSKGLYIGLF 2336

Query: 471  ADDV--PIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKA 528
             +     I V GDV  +RQI+ NL++NAIKFT +G+V           + K  L   +  
Sbjct: 2337 INPCFSKIPVNGDVNILRQIIVNLLTNAIKFTEKGEV-----------YLKLNLSLNNNV 2385

Query: 529  YQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEA 588
             +S  +  +EE+   + +   +++  + KK      ++K    P   V            
Sbjct: 2386 DRSPINEEEEEEEGDEYEEMQNEDTINLKKRN----NNKRKGSPSNYV------------ 2429

Query: 589  TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
               I  +V D+GIGI ++    LF+++ Q+    +R Y GTGLGL+ICKQLV LM G + 
Sbjct: 2430 ---INIEVSDSGIGIKQSDFGKLFQRFSQIEVGSSRAYDGTGLGLSICKQLVNLMKGDIG 2486

Query: 649  VTSKVHCGSTFTF 661
            + SK+  GS F F
Sbjct: 2487 IRSKIGEGSVFHF 2499



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 75/139 (53%), Gaps = 24/139 (17%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
            K  P IL+VEDN++N  +   M+++LG    D+  NG+E V   + + YDLILMD+ MPV
Sbjct: 2911 KISPSILVVEDNELNANILFRMLQKLGIKDPDLALNGLEGVKKAKNEEYDLILMDIQMPV 2970

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            MDG +AT  IR  ++ GN                      K  PIIAMTA+A++   E  
Sbjct: 2971 MDGYEATTKIR--KEEGNK---------------------KHTPIIAMTASAMNGQKEAM 3007

Query: 976  FANGMDSFVSKPVTFQKLK 994
             + G D F SKP T + L+
Sbjct: 3008 LSAGCDDFFSKPFTLKDLQ 3026


>gi|440714431|ref|ZP_20895010.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica SWK14]
 gi|436440627|gb|ELP33931.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica SWK14]
          Length = 848

 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 158/289 (54%), Gaps = 24/289 (8%)

Query: 222 NFLHFVLQNAPVVMGHQDKELRYRFIYN----HFPSLHEEDILGKTDVEIFSGAGVKESQ 277
           + L  +L N P  +  +D + R+  + +     F     +++ G+TD +IF+    + ++
Sbjct: 142 SLLKTLLANIPDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGAR 201

Query: 278 DFKREVLEKGLPAKREITFETELFGSKTFLIYVE-PVFSKSGETIGVNYMGMDVTDQVRK 336
             +  V+E G      +  ET      T+ +  + P+ + +GE IG   +  D+TD  R 
Sbjct: 202 LDELRVIETGEALVDRVERETWPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRS 261

Query: 337 REKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEIL 395
                            E  L++ + + +   R+K + LA MSHEIR+P+  ++ MA++L
Sbjct: 262 -----------------EAALHEAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLL 304

Query: 396 SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT 455
           S TKLD +Q+  + ++  S + +L+LINDILD SK+E+  ++LE+  F   + ++  L++
Sbjct: 305 SQTKLDPDQQDYVQIIQESSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRS 364

Query: 456 -AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
            +  + +K L L+ DI+ ++P  +IGD  R+RQ+LTNLI NAIKFT  G
Sbjct: 365 FSFKASEKGLELQRDISPELPDRLIGDPGRVRQVLTNLIGNAIKFTDHG 413



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 22/139 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ ED   N  V   +++ LGH   + ++G E +   + ++YD++LMD+ MPVMDGL+A
Sbjct: 554  VLVAEDGVTNQHVIAGLLRSLGHKCSIASDGRETLTKWRSESYDVVLMDMHMPVMDGLEA 613

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR  E    W               G+  H    PI+A+TA A+SE A  C   GMD
Sbjct: 614  TRAIRQEE----W---------------GTERH---TPIVALTAAAMSEDAAACREAGMD 651

Query: 982  SFVSKPVTFQKLKECLEQY 1000
            S+++KP+  +KL++ L  Y
Sbjct: 652  SYLTKPIHSRKLRDALTPY 670



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 74/151 (49%), Gaps = 31/151 (20%)

Query: 583 DEDLEAT------------VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
           D DL AT            V +R  V D+GIGIP      +   + Q  A   R++GGTG
Sbjct: 429 DRDLAATHSGRESPERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTG 488

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI---EENSDDPDDLSDMADQ- 686
           LGL+I +QLVELMGG L + S+V  G+TF+F L   V P     E  D+ +DL   A Q 
Sbjct: 489 LGLSISRQLVELMGGELHLQSEVGVGTTFSFQLKMPVCPASMPNEVDDEEEDLGGPARQR 548

Query: 687 ----------DSVTDD-VTAGFFQFQPRTLG 706
                     D VT+  V AG      R+LG
Sbjct: 549 LAPLHVLVAEDGVTNQHVIAGLL----RSLG 575


>gi|223940459|ref|ZP_03632310.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223890862|gb|EEF57372.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 832

 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 141/299 (47%), Gaps = 71/299 (23%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ GV++M  +L  T L+ EQR  +  + SS + +L +INDILD SK+
Sbjct: 156 EFLANMSHEIRTPMNGVIAMTGLLLETNLNNEQRSYVETIHSSSESLLTIINDILDFSKI 215

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LE   F  R  V+  L   A  + +K L L   + DD+P  V GDV R+RQ+L 
Sbjct: 216 ESGKLELEHRPFNLRMGVEEALDLLATKAAEKKLDLAYQMDDDIPSHVHGDVTRLRQVLV 275

Query: 491 NLISNAIKFTPEGKVGIKLYV---VPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQT 547
           NL+SN IKFT EG+V + + +    PEP               +A DA + + H     T
Sbjct: 276 NLLSNGIKFTNEGEVFVHVKIHSASPEP---------------TADDATRLQLHFTVRDT 320

Query: 548 ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
                G H  +    ++     D   T    G                   TG+G+    
Sbjct: 321 GI---GIHPTQIDRLFKSFSQADASTTRQYGG-------------------TGLGL---- 354

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
                                     AI K+LVELMGG++ V S +  GSTF F++P++
Sbjct: 355 --------------------------AISKRLVELMGGKMWVESTLQRGSTFHFLIPFR 387



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 85/141 (60%), Gaps = 18/141 (12%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++LL +DN IN  VA  +++Q+G+  DV NNG+E + A++ Q YDLI MDV MP MDGL+
Sbjct: 551  RVLLCDDNLINQKVALRLLQQMGYKADVANNGLECLKALERQPYDLIFMDVQMPEMDGLQ 610

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR-IPIIAMTANALSESAEECFANG 979
            AT+ IR                 Q  PS  +  HFK  I IIA+TANA+    ++C A G
Sbjct: 611  ATQQIRR---------------RQQDPSHPA--HFKSPIFIIAITANAMQGDRDKCIAAG 653

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            MD +++KPV    ++  +E++
Sbjct: 654  MDDYLAKPVRTDDIRLIIERW 674


>gi|209550469|ref|YP_002282386.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536225|gb|ACI56160.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 1126

 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 12/200 (6%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           +  VF   GE     ++ MD    V + +    L  ++   K++E EL   +   E   R
Sbjct: 535 ISTVFHVGGE----RWVNMDA--MVSEGQHWVALFTDVTELKSREEELRHLLSRAEAADR 588

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD 
Sbjct: 589 AKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKSGNALLTIINDILDF 648

Query: 429 SKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           SK+++G MKL  A F   E V+ V   L + AA     L++    A D+P  VIGD  R 
Sbjct: 649 SKIDAGQMKLRRAAFDITEAVEDVATLLSSHAAEKNIELLVRA--APDLPAAVIGDAGRF 706

Query: 486 RQILTNLISNAIKFTPEGKV 505
           RQI+TNL+ NA+KFT  G V
Sbjct: 707 RQIVTNLVGNAVKFTERGHV 726



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 22/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN++N +V   +++  G S  VV+NG EAV A +     +I+MDV MPVM+G +A
Sbjct: 997  VLVAEDNEVNQIVFTQILQGTGLSFLVVDNGEEAVAAWERHRPRIIMMDVSMPVMNGHQA 1056

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T+ IR  E                           R+PII +TA+AL    E C   GMD
Sbjct: 1057 TQTIRERE----------------------KGQGHRVPIIGVTAHALESDRELCLDAGMD 1094

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP++ + L+E + Q+ 
Sbjct: 1095 DYMSKPISPELLEEKIRQWL 1114



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 47/73 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP   L ++F K+ QV A   R++ GTGLGLAI   LV+L GG L V S+   
Sbjct: 746 IEDTGIGIPAEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGK 805

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 806 GSVFTVNLPFAVA 818


>gi|424918579|ref|ZP_18341943.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
 gi|392854755|gb|EJB07276.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
          Length = 1127

 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 12/200 (6%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           +  VF   GE     ++ MD    V + +    L  ++   K++E EL   +   E   R
Sbjct: 536 ISTVFHVGGE----RWVNMDA--MVSEGQHWVALFTDVTELKSREEELRHLLSRAEAADR 589

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD 
Sbjct: 590 AKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKSGNALLTIINDILDF 649

Query: 429 SKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           SK+++G MKL  A F   E V+ V   L + AA     L++    A D+P  VIGD  R 
Sbjct: 650 SKIDAGQMKLRRAAFDITEAVEDVATLLSSHAAEKNIELLVRA--APDLPAAVIGDAGRF 707

Query: 486 RQILTNLISNAIKFTPEGKV 505
           RQI+TNL+ NA+KFT  G V
Sbjct: 708 RQIVTNLVGNAVKFTERGHV 727



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 22/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN++N +V   +++  G S  VV+NG EAV A +     +I+MDV MPVM+G +A
Sbjct: 998  VLVAEDNEVNQIVFTQILQGTGLSFLVVDNGEEAVAAWERHRPRIIMMDVSMPVMNGHQA 1057

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T+ IR  E                           R+PII +TA+AL    E C   GMD
Sbjct: 1058 TQTIRERE----------------------KGQGHRVPIIGVTAHALESDRELCLDAGMD 1095

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP++ + L+E + Q+ 
Sbjct: 1096 DYMSKPISPELLEEKIRQWL 1115



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 47/73 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP   L ++F K+ QV A   R++ GTGLGLAI   LV+L GG L V S+   
Sbjct: 747 IEDTGIGIPAEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWGK 806

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 807 GSVFTVNLPFAVA 819


>gi|332666984|ref|YP_004449772.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliscomenobacter hydrossis DSM 1100]
 gi|332335798|gb|AEE52899.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliscomenobacter hydrossis DSM 1100]
          Length = 1316

 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 111/357 (31%), Positives = 181/357 (50%), Gaps = 39/357 (10%)

Query: 178  LEKMLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGH 237
            L + LE S +  ++  E+L  S   L  +   +EEL         +   +L      M  
Sbjct: 747  LNEELETSKEEIESTNEELTTSNHELNARIQQIEELY-------TYYETILATVHEPMLV 799

Query: 238  QDKELRYRFIYNHFPS---LHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKR-- 292
             DK +R R     F +   + EEDI+G +   +F  +  + +    RE+LE  +P     
Sbjct: 800  LDKNIRIRSANESFCATFKVAEEDIIGTS---MFKLSNNQWNIPALRELLEDIVPKNNRF 856

Query: 293  ---EITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTD------QVRKREK--MA 341
               E+  +  + G KT L+    +  KS     +    +D+TD      +++K+EK  + 
Sbjct: 857  HNFEVDLDFSIVGPKTLLLNAHRIVQKSKNEELIVLTMVDITDARKLALELQKKEKQVLD 916

Query: 342  KLRE--EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNT 398
            +L E   IA QK K         I EE ++AKQ  L+ MSHEIR+P+  ++    ++  T
Sbjct: 917  ELMEAKRIAEQKTK---------IAEEAVKAKQQFLSNMSHEIRTPMNAIIGFTNVVMKT 967

Query: 399  KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
            KL+  Q++ +  +  SG+ ++ LINDILDL+KVE+G M  E + FR    V  +L     
Sbjct: 968  KLNEAQKEYINAIKVSGESLIILINDILDLAKVEAGKMVFEHSPFRLFSSVSDMLHLFET 1027

Query: 459  SLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
             +Q K L+L      +VP  ++GD +R+RQI+ NLISNA+KFT  GK+ +++ ++ E
Sbjct: 1028 KMQEKNLVLIKQYDTNVPEILVGDPVRLRQIMLNLISNAVKFTNAGKITVRVDLLKE 1084



 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 4/106 (3%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            V +   V DTGIGIPEN L  +F  + Q++ +  R  GGTGLGLAI KQ+V+L GG + V
Sbjct: 1089 VSVEFSVSDTGIGIPENNLKQIFDAFEQIAPETTRLNGGTGLGLAIVKQMVKLQGGNVKV 1148

Query: 650  TSKVHCGSTFTFILPYQ----VSPIEENSDDPDDLSDMADQDSVTD 691
             SKV  GSTF+F L ++    +  IE N     D  D  ++ ++T+
Sbjct: 1149 KSKVDKGSTFSFSLSFKKVKSLVAIENNHKVDFDRKDFLEKAAITN 1194



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 25/140 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KIL+VED ++N ++ K+++   G + D+ NNG  A+  +Q   YD+ILMD+ MP M G +
Sbjct: 1196 KILVVEDVEMNQLLMKTLLSDFGFTFDLANNGKMAIEKLQKNKYDIILMDLKMPEMSGFE 1255

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT  IR+           E  I+               PIIA+TA+  +   E+C A GM
Sbjct: 1256 ATAYIRN-----------EMNIQT--------------PIIALTADVTTVDFEKCQAAGM 1290

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            + ++SKP   Q L   + Q+
Sbjct: 1291 NDYISKPFDEQILYSKIVQH 1310


>gi|428318322|ref|YP_007116204.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
           PCC 7112]
 gi|428242002|gb|AFZ07788.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
           PCC 7112]
          Length = 1219

 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 176/354 (49%), Gaps = 32/354 (9%)

Query: 317 SGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLA 375
           S E   + ++ + +   +++     + + EIA +K  ET L K +   +   RAK + L+
Sbjct: 644 SSEIESLKHISVQLAIAIQQSTLFEQAQTEIAERKLAETALQKAVVAADTANRAKSEFLS 703

Query: 376 TMSHEIRSPLTGVVSMAEIL-SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           +MSHE+R+PL  ++  ++++  ++ L+ + +Q L ++  +G+ +L LINDIL++SK+E+G
Sbjct: 704 SMSHELRTPLNAILGFSQVMVRDSSLNNQHQQHLEIINRAGEHLLALINDILEMSKIEAG 763

Query: 435 VMKLEAAKF---RPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
             +L  + F   R  + ++ + +  A S  K L L  ++   VP  V GD  ++RQIL N
Sbjct: 764 RSQLNESSFNLMRLLKTLEEMFRLKAKS--KKLQLNLEVGQGVPQFVSGDEGKLRQILIN 821

Query: 492 LISNAIKFTPEGKVGIKLYVVPEPPFAKEGLK----QKSKAYQSATDAVKEEKHQPKSQT 547
           L+ NAIKFT  G V +++    E     E  +    Q+S A ++A    K          
Sbjct: 822 LVGNAIKFTERGSVTLRVKKKVEESLGAETAELSDTQESLAVETAAIQTKPAYAGSNQSA 881

Query: 548 ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
            +D +                D +   PV    S        + ++ ++ DTG+GI    
Sbjct: 882 QADFDCV--------------DANSIRPVFLQKS------ELLRLQFEIEDTGLGIAPEE 921

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           +  LF  + Q      +   GTGLGL I  + V++MGG +TV+SK   GS F F
Sbjct: 922 INKLFEPFEQTKTGQ-KSQQGTGLGLPISHKFVQMMGGDITVSSKHELGSKFAF 974



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 28/145 (19%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            +P+ +IL+V+D   N +V   ++  LG  +    +G EA+   +     LI MD+ MPVM
Sbjct: 1002 QPEYRILVVDDRADNGLVIDRLLSPLGIVVRSARDGQEAIAIWEDWQPHLIWMDMQMPVM 1061

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG +ATR I+                  A P        K+  I+A+TA+   E  +   
Sbjct: 1062 DGYEATRQIK------------------AHPLG------KQTVIVALTASVFEEERQTIL 1097

Query: 977  ANGMDSFVSKP----VTFQKLKECL 997
              G D F+ KP    + F K++E L
Sbjct: 1098 GAGCDDFMRKPFEAKILFAKMEELL 1122


>gi|428222052|ref|YP_007106222.1| histidine kinase,Response regulator receiver domain-containing
           protein,histidine kinase,GAF domain-containing protein
           [Synechococcus sp. PCC 7502]
 gi|427995392|gb|AFY74087.1| histidine kinase,Response regulator receiver domain
           protein,histidine kinase,GAF domain-containing protein
           [Synechococcus sp. PCC 7502]
          Length = 884

 Score =  129 bits (324), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 107/166 (64%), Gaps = 2/166 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L K I I E   ++K + LA MSHEIR+P+ GV+ MAE+L+NT L  EQ
Sbjct: 462 DISDRKQAEIALAKAIEIAESAAKSKSEFLANMSHEIRTPMNGVLGMAELLANTYLTEEQ 521

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKI 463
           + ++  +  SGD +L +INDILD SK+ESG+++LE   F    ++  V +  +  +L K 
Sbjct: 522 QDIVQTIKDSGDTLLVIINDILDFSKIESGMLELEDHPFDLNNLITSVCKLLSKQALSKN 581

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L L+  I  D+P++VIGD  R+RQI  NL+ NAIKFT  G V I +
Sbjct: 582 LDLKYVIFPDIPLKVIGDSTRLRQIFLNLVGNAIKFTENGSVIITV 627



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 25/156 (16%)

Query: 845  SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
            S S ++      KP  KILL EDN +N  VA  M+++LG+  D+ NNG+E +  V+ Q+Y
Sbjct: 745  SESGSQQSNVIAKPPIKILLAEDNPVNQKVATMMLRKLGYIADIANNGLEVLAMVEQQSY 804

Query: 905  DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
            DLILMD+ MP +DGL AT++IR  +    W                         IIA+T
Sbjct: 805  DLILMDMQMPEIDGLTATKIIRQSDKPQPW-------------------------IIALT 839

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            ANAL +  + C   GM+ F+ KP+  Q     + ++
Sbjct: 840  ANALEQDRQLCIDAGMNDFLPKPIPIQDFNRIISEF 875



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 38/64 (59%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI  + +  LF  + Q  +  +RK+GGTGLGL I K LVELM G + V S  + 
Sbjct: 644 VKDTGIGINSDRIHQLFHPFTQADSSISRKFGGTGLGLTISKSLVELMDGTIWVESLGNI 703

Query: 656 GSTF 659
              F
Sbjct: 704 SGNF 707


>gi|374702786|ref|ZP_09709656.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. S9]
          Length = 923

 Score =  129 bits (324), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 122/434 (28%), Positives = 188/434 (43%), Gaps = 89/434 (20%)

Query: 582  MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
            ++++ E+   IR  V D+GIG+ ++ L  LF+ + Q     +R+ GGTGLGLAI K+L+E
Sbjct: 430  LEDENESHAQIRISVQDSGIGLSDDDLRLLFQAFSQADNSLSRQAGGTGLGLAISKRLIE 489

Query: 642  LMGGRLTVTSKVHCGSTF--TFILPYQVSPIEENSDDP-----------DDLSDMADQDS 688
             MGG + V S    GS F  +  LP   + IE+    P            +L+  A Q  
Sbjct: 490  QMGGEIGVDSSPGQGSEFWISLSLPKARADIEDLPRPPLLGRSIAILETHELARQALQHQ 549

Query: 689  VTD-DVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNN 747
            + D  +    F  QP    SL  +   SR     P+ IG A    V G   TS   P   
Sbjct: 550  LEDCGLNVNAFS-QP---DSLIEAIDASRQG---PSPIGIA----VMGV--TSQELPPER 596

Query: 748  RQKETAPLED-ACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPAT 806
             +     LE  +C    +  T    E    HS  P+  T++     C    T   Q   +
Sbjct: 597  LKHYIRQLEQMSCKCIVLCPT---TEQVLYHSSLPDAYTQLHAKPAC----TRKLQRALS 649

Query: 807  ESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVE 866
            E                                IS      +AE PE  P   P IL V+
Sbjct: 650  E-------------------------------MISPRHQRLTAETPE--PTRTPNILCVD 676

Query: 867  DNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIR 926
            DN  N+++ +++++ +G  + V  +G EA+   +   +DLILMDV MP MDG + T  IR
Sbjct: 677  DNPANLLLVQTLLEDMGADVSVAKDGHEALDKARKVRFDLILMDVQMPGMDGRETTEAIR 736

Query: 927  SFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSK 986
             +E   N  A                     +PI+A+TA+ALS        +GMD +++K
Sbjct: 737  LWETEQNNSA---------------------VPIVALTAHALSNEKRTLLQSGMDDYLTK 775

Query: 987  PVTFQKLKECLEQY 1000
            P++ ++L + + ++
Sbjct: 776  PISERQLAQVVLKW 789



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 90/141 (63%), Gaps = 1/141 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+PL G++    +L  ++L   Q+  L  +  S D +L +IN+ILD SK+
Sbjct: 290 EFLANMSHEIRTPLNGILGFTNLLQKSELTPRQQDYLSTIEKSADNLLGIINEILDFSKI 349

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + LE+  F  RE+++  L   A +  +K L L   +  D P  ++GD LR+RQILT
Sbjct: 350 EAGKLVLESIPFNLRELIQDTLTILAPTAHEKHLELLSLVYRDTPRALLGDPLRLRQILT 409

Query: 491 NLISNAIKFTPEGKVGIKLYV 511
           NL++NAIKFT EG + +++ +
Sbjct: 410 NLVNNAIKFTREGSIAVRVML 430


>gi|229589127|ref|YP_002871246.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229360993|emb|CAY47855.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 989

 Score =  129 bits (324), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 114/184 (61%), Gaps = 5/184 (2%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LATMSHEIR+PL GV+   E+++ T +   QRQ L ++  S  ++ QLI+++LD+SK+E
Sbjct: 508 FLATMSHEIRTPLYGVLGNLELMALTDMSERQRQYLEIIQGSSTVLFQLISNVLDVSKIE 567

Query: 433 SGVMKLEAAKFRPREVVKH-VLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           SG M +EAA F PR++V+  VL  AA +  K L ++ +I   VP++++GD  RIRQIL N
Sbjct: 568 SGQMAVEAAPFSPRQLVEESVLGFAATARNKGLQIDAEIDPQVPLQLLGDAGRIRQILHN 627

Query: 492 LISNAIKFTPEGKVGIKLYV--VPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTAS 549
           L+ NAIKFT  G+V ++L V  + E   A +   Q +       D   E+  +P  Q A 
Sbjct: 628 LLGNAIKFTESGRVRLRLTVQALLEDEVALQ--WQVTDTGVGIPDKALEQLFKPFYQVAG 685

Query: 550 DQNG 553
            Q+G
Sbjct: 686 GQDG 689



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 26/142 (18%)

Query: 856 PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
           P    ++L+ EDN ++  V +  ++ LG    V  +G  A+     Q +DL++ D+ MP 
Sbjct: 750 PCLNVRVLVAEDNPVSQAVLQEQLEALGAQATVARDGEHALQIWGSQPFDLVITDINMPR 809

Query: 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
           ++G    R +R            E G++              +PII +TANAL E  E C
Sbjct: 810 LNGYDLARALR------------EQGVQ--------------VPIIGVTANALREEGERC 843

Query: 976 FANGMDSFVSKPVTFQKLKECL 997
            A GM+++V KP++   L++ L
Sbjct: 844 LAVGMNAWVVKPLSMNMLRQAL 865



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 586 LEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
           LE  V ++  V DTG+GIP+ AL  LF+ + QV+    +   G GLGL+IC +L ELMGG
Sbjct: 651 LEDEVALQWQVTDTGVGIPDKALEQLFKPFYQVAG--GQDGNGAGLGLSICSRLSELMGG 708

Query: 646 RLTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
            + V S+   GS+F+  +   +    E+   P
Sbjct: 709 TMRVVSEPGLGSSFSLFITLPILSSAESVAGP 740


>gi|334129853|ref|ZP_08503656.1| Sensor protein [Methyloversatilis universalis FAM5]
 gi|333444889|gb|EGK72832.1| Sensor protein [Methyloversatilis universalis FAM5]
          Length = 871

 Score =  129 bits (324), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 145/297 (48%), Gaps = 62/297 (20%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LA MSHEIR+P+ GV+ MA++L  ++L+ EQR+ L  +  SG+ +L L+NDILDLSK+
Sbjct: 231 QFLANMSHEIRTPMNGVLGMAQLLLRSELNGEQRRYLETLYRSGENLLDLLNDILDLSKI 290

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G   L  ++F PR  ++ V +  +A + +K L L  D+ D +P  + GD  R+RQI  
Sbjct: 291 EAGRFDLVRSEFDPRRTLREVTELLSAQAREKGLTLALDVDDAIPARIEGDPGRLRQIAV 350

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NLI NAIKFT  G V I L                 +A+ +  D + +E+  P S +   
Sbjct: 351 NLIGNAIKFTEHGGVFIAL-----------------RAHSADDDLLLKER--PTSGSIRM 391

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
                D   G    DH                                            
Sbjct: 392 VMAVRDTGIGIADGDHGR------------------------------------------ 409

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
           +F  + Q     +R++GGTGLGLAI +QL E++GG + + S    GSTFT  LP +V
Sbjct: 410 VFDAFAQADNTASRRFGGTGLGLAISRQLAEMLGGSIALRSAQGIGSTFTLTLPCKV 466



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 22/158 (13%)

Query: 845  SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
            S S   +P+  P+    +LLVED+ +N  VA  M++  G  +   ++G +A+  ++   +
Sbjct: 474  SHSGLSLPKL-PRLAGSVLLVEDSAVNAEVASHMLQAFGLRVTQAHDGRQALQQLEHARF 532

Query: 905  DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
            D++LMD  MP MDG +A + IR  E                +P++         P+IA+T
Sbjct: 533  DVVLMDCQMPGMDGFEACKRIRDREQL------------VGLPAT---------PLIALT 571

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            A A     E C A GMD +++KP     L   + ++ P
Sbjct: 572  AGANDGDRENCIAAGMDDYLAKPFREDDLYAIVRKWLP 609


>gi|66814470|ref|XP_641414.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74856052|sp|Q54W36.1|DHKH_DICDI RecName: Full=Hybrid signal transduction histidine kinase H
 gi|60469435|gb|EAL67428.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1378

 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 149/318 (46%), Gaps = 38/318 (11%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNT--KLDREQRQLLGVMISSGDLVLQLINDILDLSK 430
            L TMSHE+R+PL G++ +   LS +  +L  EQ      +    + +L LIN+ILDLSK
Sbjct: 495 FLQTMSHEMRTPLAGIMGINSWLSTSSPQLTSEQLDGCHTIDMCAEALLVLINNILDLSK 554

Query: 431 VESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           +E   + LE  +F P ++V+  +   ++   QK L +   +  +   +V+GD  RIRQ+L
Sbjct: 555 LEENKIILEETEFYPTKIVEDSVDILSSQAEQKKLDIIFQLKYNCLSKVVGDFYRIRQVL 614

Query: 490 TNLISNAIKFTPEGK---VGIKLYVVPEPPFAKEG-------------LKQKSKAYQSAT 533
           TNLISN++KFTP      VG ++Y    P   K                   +       
Sbjct: 615 TNLISNSVKFTPANGQIIVGCEIYHETTPSTRKRSSLDSIEITIPCNHNNSNNSNNNHNH 674

Query: 534 DAVKEEKHQPKSQTASDQNGFHDKKHGEGYQ--------DHKHDDDPGTPVSHGNSMDED 585
           +      +      + + NGF+   H   +         D   D     P  +G  +   
Sbjct: 675 NNNNNNNNHLNCSGSFNNNGFNHGHHHHHHHHHHHHHHHDKHCDQKIIVPGKYGKLL--- 731

Query: 586 LEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
                W    V D GIGIPE     LF+ + Q  A   RKYGG+GLGLAI K+L +L+GG
Sbjct: 732 ----FW----VIDNGIGIPEEGREKLFQTFSQYDASTTRKYGGSGLGLAISKRLTQLLGG 783

Query: 646 RLTVTSKVHCGSTFTFIL 663
            +   S+   GS+F F++
Sbjct: 784 DIWFESQKGKGSSFHFLV 801



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 28/132 (21%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHS---IDVVNNGVEAV-HAVQCQNYDLILMDVCMPVM 916
            KI++ ED+ +N  VA   + +LG+    I  V NG +A+ H    +  D+ILMD+ MP +
Sbjct: 1244 KIMVAEDSLVNQKVACRFLTKLGYKKEEIIFVVNGQQAIDHIENVEMVDVILMDMQMPEV 1303

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG +AT  IR                    P++G         II +TANA +E  ++C 
Sbjct: 1304 DGCEATTRIR-----------------MRYPTTGPH-------IIGLTANAFNEDKDKCL 1339

Query: 977  ANGMDSFVSKPV 988
             +GM  +++KPV
Sbjct: 1340 LSGMCHYLAKPV 1351


>gi|28901084|ref|NP_800739.1| hypothetical protein VPA1229 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28809597|dbj|BAC62572.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 882

 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 176/406 (43%), Gaps = 69/406 (16%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + D+GIGI  + L T+F  + Q     +R++GGTGLGLAIC+QLV +MGG+L  TS    
Sbjct: 540 IKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATSTKGV 599

Query: 656 GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTS 715
           G+ F F +  +  P+     D                V  G F          ++     
Sbjct: 600 GTCFGFSIEVEALPLFGWHSDV---------------VKRGLFICDNYA----YAEQIVQ 640

Query: 716 RSKKLLPNSIGFASAHKVNGFSET-SYSFPSNNRQKETAPLEDACSVAEVAETLSEPESS 774
             +      +G  S  +     E     F  N+ Q +     D+C ++E+AE        
Sbjct: 641 ECRLAQIELVGVNSLSEAKALDEDFDVIFLCNDGQMDI----DSC-LSELAEVY------ 689

Query: 775 FSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQ 834
                      +V R   C    TS + N       H+   +  +     +  +++ +++
Sbjct: 690 -----------DVRRVVVCQHHLTSSYTNA---ENVHAVLTQPFLGNRFKHAIEELAKLE 735

Query: 835 EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
           +   R + +  +S AE      +   +IL+ EDN +N  +A   + + G+   + +NG E
Sbjct: 736 KNTLRDNVTNIASRAE--SKISRTHRRILIAEDNLMNQKIASFFLDKAGYDYLITSNGQE 793

Query: 895 AVHAV-QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
           A+ A+ + + +D ILMD  MPVMDGL AT+ IR +E         + G            
Sbjct: 794 ALDAITKGEQFDAILMDCMMPVMDGLTATKEIRRWEK--------KVGC----------- 834

Query: 954 HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
             K+  IIA+TA+ L E    CFA GMD+++ KP    +L E   +
Sbjct: 835 --KKTTIIALTASVLEEDIHNCFAAGMDAYLPKPYKSNQLFELFNE 878



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 106/166 (63%), Gaps = 13/166 (7%)

Query: 349 VQKAKETELNKTIHITEETM---RAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           V + K+ + ++ +H  E  +   RAK + LA MSHEIR+PL G++ M EILS ++L   Q
Sbjct: 358 VVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELSPHQ 417

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH---VLQTAAASLQ 461
           ++++  + +S   +L L+NDILDLSK+ESG ++L   +   REVV     + Q+ A S Q
Sbjct: 418 QEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKATSKQ 477

Query: 462 KILMLEGDIADD--VPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
               LE DI+ D  +P  V+ D  RI+QI+TNL+SNA+KFT +G +
Sbjct: 478 ----LELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYI 519


>gi|375013004|ref|YP_004989992.1| PAS domain-containing protein [Owenweeksia hongkongensis DSM 17368]
 gi|359348928|gb|AEV33347.1| PAS domain S-box [Owenweeksia hongkongensis DSM 17368]
          Length = 834

 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 216/473 (45%), Gaps = 100/473 (21%)

Query: 200 VTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHEEDI 259
           +T + +  S ++++ + L+ ++N    ++QN  + +   D++ +  F  + F  +    +
Sbjct: 164 ITAVARDISALKQVQEALEASENKYRGIIQNMELGLVEVDQQGKVIFANSWFCEMTGYSV 223

Query: 260 --LGKTDVE--IFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYV----E 311
             L ++D+E  + +  GV++ ++      EK    + E+ +E +L      LI+V     
Sbjct: 224 EELKQSDLEKLLLTAEGVEKMRNRN----EKRKDGEAEV-YEIQLRRKDERLIWVTISGA 278

Query: 312 PVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK 371
           P ++ SG+ IG   + +D+T+Q + +  + + +E    +KA++ E              K
Sbjct: 279 PFYNPSGKMIGSVGIHLDITNQKKLQNDLLRAKE--VAEKARQAE--------------K 322

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+PL  VV MA +L  T+L+ +QR+ +  +  +GD++  LI+++LD+SK+
Sbjct: 323 EFLAHMSHEIRTPLNAVVGMANLLGTTQLNADQREYVNDIQYAGDILHGLISEVLDISKI 382

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG +++  ++    +V+  V +T    + ++   +   +   VP+ ++ D   + QIL 
Sbjct: 383 ESGEVEMVPSELNVNDVLSMVCKTMEHRAKERFNTINYKVDKSVPVNILADRNFVNQILL 442

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NLI NA+KFT  G + + +   P                       KE+K       A  
Sbjct: 443 NLIGNAVKFTENGSINVDVSYRPN----------------------KEDKGSLIVSVADT 480

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
             G    K  + ++ +K + D  T   HG                               
Sbjct: 481 GIGIEQAKLQKIFEPYKQEKDNFTQSKHG------------------------------- 509

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
                            GTGLGL+I KQLV++ GG + V SK   GS+FTF L
Sbjct: 510 -----------------GTGLGLSIVKQLVKIHGGSIDVFSKKGKGSSFTFSL 545



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 22/129 (17%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +IL+ ED+ +N    K ++KQ G      ++G +A+   +   YD+ILMD+ MP+++G +
Sbjct: 574 QILVAEDSYLNQKYIKGLLKQWGVECQFASDGQQAIAEAKKTKYDIILMDMQMPLINGYE 633

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           AT+ IR+ +   N                       R PI+A+TA+AL +  E+    GM
Sbjct: 634 ATQEIRNNQKNPNC----------------------RTPILALTASALLDEKEKALGVGM 671

Query: 981 DSFVSKPVT 989
           D  ++KP T
Sbjct: 672 DGHLTKPFT 680


>gi|409438237|ref|ZP_11265324.1| Sensor protein [Rhizobium mesoamericanum STM3625]
 gi|408750103|emb|CCM76491.1| Sensor protein [Rhizobium mesoamericanum STM3625]
          Length = 944

 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 116/195 (59%), Gaps = 6/195 (3%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
           G  ++ +D T  + +R+    L  ++   K +ET L + +   E   R K + LA MSHE
Sbjct: 362 GERWVNLDAT--ISERQHWIALFTDVTEAKERETALERLLSRAEAADRVKSEFLANMSHE 419

Query: 381 IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
           IR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ ++ +INDILD SK+++G M+L  
Sbjct: 420 IRTPMNGVLGMAELLAKTDLDTRQKTFIDIIVKSGNALVTIINDILDFSKIDAGKMRLRP 479

Query: 441 AKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
             F   E ++ V  L ++ AS + I +L    A D+P  VIGD  R RQI+TNL+ NA+K
Sbjct: 480 TTFNLLEAIEDVATLLSSTASEKNIELLV-RTAPDLPSAVIGDAGRFRQIITNLVGNAVK 538

Query: 499 FTPEGKVGIKLYVVP 513
           FT  G V + +   P
Sbjct: 539 FTERGHVLLDVGFAP 553



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 26/174 (14%)

Query: 817 EMIQTSKTNEPQKICEMQEKPDRISQSPSS-SSAEVPETKPKPKPKILLVEDNKINVMVA 875
           ++++ S+T +      MQ   + +   PS    AE   T P     +L+ EDN +N +V 
Sbjct: 773 DVVRASRTKQVCAAAIMQSSAEAM---PSPLPKAEPSATAPTELVDVLVAEDNDVNQIVF 829

Query: 876 KSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
             +++  GHS  VV NG EAV A       +I+MDV MPVM+G  ATR IR  E      
Sbjct: 830 TQILRGSGHSFLVVGNGQEAVDAWHRHTPRIIMMDVSMPVMNGHDATRAIRDRE------ 883

Query: 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVT 989
                                R+PII +TA+AL    + C   GMD ++SKP++
Sbjct: 884 ----------------RGQGHRVPIIGVTAHALEADRDLCLEAGMDDYMSKPIS 921



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 49/73 (67%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP++ L ++F K+ Q+ +   R++ GTGLGLAI   LV+L GG L V S+   
Sbjct: 565 VEDTGIGIPDDKLESIFDKFSQIDSSSTRRHEGTGLGLAITAGLVDLFGGYLEVDSRPGE 624

Query: 656 GSTFTFILPYQVS 668
           GS F+  LP+ V+
Sbjct: 625 GSVFSVNLPFVVA 637


>gi|417322829|ref|ZP_12109363.1| hypothetical protein VP10329_09312 [Vibrio parahaemolyticus 10329]
 gi|328470983|gb|EGF41894.1| hypothetical protein VP10329_09312 [Vibrio parahaemolyticus 10329]
          Length = 878

 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 176/406 (43%), Gaps = 69/406 (16%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + D+GIGI  + L T+F  + Q     +R++GGTGLGLAIC+QLV +MGG+L  TS    
Sbjct: 536 IKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATSTKGV 595

Query: 656 GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTS 715
           G+ F F +  +  P+     D                V  G F          ++     
Sbjct: 596 GTCFGFSIEVEALPLFGWHSDV---------------VKRGLFICDNYA----YAEQIVQ 636

Query: 716 RSKKLLPNSIGFASAHKVNGFSET-SYSFPSNNRQKETAPLEDACSVAEVAETLSEPESS 774
             +      +G  S  +     E     F  N+ Q +     D+C ++E+AE        
Sbjct: 637 ECRLAQIELVGVNSLSEAKALDEDFDVIFLCNDGQMDI----DSC-LSELAEVY------ 685

Query: 775 FSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQ 834
                      +V R   C    TS + N       H+   +  +     +  +++ +++
Sbjct: 686 -----------DVRRVVVCQHHLTSSYTNA---ENVHAVLTQPFLGNRFKHAIEELAKLE 731

Query: 835 EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
           +   R + +  +S AE      +   +IL+ EDN +N  +A   + + G+   + +NG E
Sbjct: 732 KNTLRDNVTNIASRAE--SKISRTHRRILIAEDNLMNQKIASFFLDKAGYDYLITSNGQE 789

Query: 895 AVHAV-QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
           A+ A+ + + +D ILMD  MPVMDGL AT+ IR +E         + G            
Sbjct: 790 ALDAITKGEQFDAILMDCMMPVMDGLTATKEIRRWEK--------KVGC----------- 830

Query: 954 HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
             K+  IIA+TA+ L E    CFA GMD+++ KP    +L E   +
Sbjct: 831 --KKTTIIALTASVLEEDIHNCFAAGMDAYLPKPYKSNQLFELFNE 874



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 107/168 (63%), Gaps = 13/168 (7%)

Query: 349 VQKAKETELNKTIHITEETM---RAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           V + K+ + ++ +H  E  +   RAK + LA MSHEIR+PL G++ M EILS ++L   Q
Sbjct: 354 VVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELSPHQ 413

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH---VLQTAAASLQ 461
           ++++  + +S   +L L+NDILDLSK+ESG ++L   +   REVV     + Q+ A S Q
Sbjct: 414 QEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKATSKQ 473

Query: 462 KILMLEGDIADD--VPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
               LE DI+ D  +P  V+ D  RI+QI+TNL+SNA+KFT +G + +
Sbjct: 474 ----LELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYISV 517


>gi|20198948|gb|AAK54089.2|AF362370_1 histidine kinase DhkH [Dictyostelium discoideum]
          Length = 1147

 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 150/316 (47%), Gaps = 36/316 (11%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNT--KLDREQRQLLGVMISSGDLVLQLINDILDLSK 430
            L TMSHE+R+PL G++ +   LS +  +L  EQ      +    + +L LIN+ILDLSK
Sbjct: 266 FLQTMSHEMRTPLAGIMGINSWLSTSSPQLTSEQLDGCHTIDMCAEALLVLINNILDLSK 325

Query: 431 VESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           +E   + LE  +F P ++V+  +   ++   QK L +   +  +   +V+GD  RIRQ+L
Sbjct: 326 LEENKIILEETEFYPTKIVEDSVDILSSQAEQKKLDIIFQLKYNCLSKVVGDFYRIRQVL 385

Query: 490 TNLISNAIKFTPEGK---VGIKLYVVPEPPFAKEG----------LKQKSKAYQSATDAV 536
           TNLISN++KFTP      VG ++Y    P   K                +    +     
Sbjct: 386 TNLISNSVKFTPANGQIIVGCEIYHETTPSTRKRSSLDSIEITIPCNHNNSNNSNNNHNH 445

Query: 537 KEEKHQPKSQTAS---DQNGFHDKKHGEGYQ------DHKHDDDPGTPVSHGNSMDEDLE 587
               +     T S   + NGF+   H   +       D   D     P  +G  +     
Sbjct: 446 NNNNNNNNHLTCSGSFNNNGFNHGHHHHHHHHHHHHHDKHCDQKIIVPGKYGKLL----- 500

Query: 588 ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
              W    V D GIGIPE     LF+ + Q  A   RKYGG+GLGLAI K+L +L+GG +
Sbjct: 501 --FW----VIDNGIGIPEEGREKLFQTFSQYDASTTRKYGGSGLGLAISKRLTQLLGGDI 554

Query: 648 TVTSKVHCGSTFTFIL 663
              S+   GS+F F++
Sbjct: 555 WFESQKGKGSSFHFLV 570



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 28/132 (21%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHS---IDVVNNGVEAV-HAVQCQNYDLILMDVCMPVM 916
            KI++ ED+ +N  VA   + +LG+    I  V NG +A+ H    +  D+ILMD+ MP +
Sbjct: 1013 KIMVAEDSLVNQKVACRFLTKLGYKKEEIIFVVNGQQAIDHIENVEMVDVILMDMQMPEV 1072

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG +AT  IR                    P++G         II +TANA +E  ++CF
Sbjct: 1073 DGCEATTRIR-----------------MRYPTTGPH-------IIGLTANAFNEDKDKCF 1108

Query: 977  ANGMDSFVSKPV 988
             +GM  +++KPV
Sbjct: 1109 LSGMCHYLAKPV 1120


>gi|288957521|ref|YP_003447862.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288909829|dbj|BAI71318.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 911

 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 184/461 (39%), Gaps = 106/461 (22%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  V DTGIGI E     LF+ + Q  +   R++GGTGLGL+I ++L  LMGG + V S
Sbjct: 363  LRIAVCDTGIGITETTRQRLFQPFTQAESSTTRRFGGTGLGLSISRRLAALMGGEIGVES 422

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDD---LSDMADQDSVTDDVTAGFFQFQPRTLGSL 708
                GS F   LP     +  ++++P +   L+ +     V DD   GF       L S 
Sbjct: 423  TPGAGSIFWLRLPMAHGALPPSAEEPQEAIELTGLTVLLGVPDDTERGF-------LASY 475

Query: 709  FSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVA--E 766
                G     ++LP                 + S P    Q   A  E  C+V  V   E
Sbjct: 476  LEQAGA----RVLP-----------------AASPPELAAQARIA-REAGCAVGVVTIDE 513

Query: 767  TLSEPESSFSHSPEPENETEVSRGKQ-------CHVETTSWFQNPATESTSHSEANREMI 819
             L  P ++F+      +E     G+        CH    S +  P    T  +EA   ++
Sbjct: 514  ALHVPAAAFA-----PDELGRRSGEARPPVVLLCHETGGSPYPGP-LPGTRGTEAGAVVL 567

Query: 820  QTSKTNEPQKI----------CEMQEKPDRISQSPSSSSAEVPETKPKPKPK-------- 861
                                  + Q +P   + +P  S+A  P T   PK          
Sbjct: 568  SRPLRRLVLLRAVAVAAGRLGAQPQLQPQPAAHAPEPSTAP-PATVTAPKTAPKTAAPGP 626

Query: 862  ---------------ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC----- 901
                           IL+ EDN +N  V    ++ LG++ ++   G EA+ A+       
Sbjct: 627  AAAPTLEEAMAAGRLILVAEDNPVNRKVLLMQLQALGYAAEMAPGGAEALAALDAMRQGR 686

Query: 902  QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII 961
            + Y L+L DV MP +DG + TR IRS E      A A+ G               R+PII
Sbjct: 687  RRYALLLTDVQMPEIDGFELTRRIRSGE------APADTG--------------TRLPII 726

Query: 962  AMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            A+TANA     E   A GMD  +SKP+   +L   L ++ P
Sbjct: 727  AITANAAPADIESYLAAGMDDVLSKPLELSQLAATLARWMP 767



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 99/163 (60%), Gaps = 2/163 (1%)

Query: 353 KETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVM 411
           +  EL ++    EE  +AK   LATMSHEIR+P+ GV+ M  +L  T+LD  QR  +G M
Sbjct: 184 RTRELRESREQAEEATKAKSAFLATMSHEIRTPMNGVLGMLGLLERTELDDHQRDTVGTM 243

Query: 412 ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDI 470
             S + +L++I+DILD SK+E+G M LE        +V+ V +T A A+  K L L   +
Sbjct: 244 RESANALLRIIDDILDFSKIEAGKMDLERVALSVPSLVEGVAETLAPAAGAKGLTLLTYV 303

Query: 471 ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
              +P  ++GD +R+RQIL NL  NAIKFT  G+V ++  + P
Sbjct: 304 DPAIPQALLGDPVRLRQILFNLAGNAIKFTESGRVILRAELEP 346


>gi|304320035|ref|YP_003853678.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
 gi|303298938|gb|ADM08537.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
          Length = 796

 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 176/407 (43%), Gaps = 57/407 (14%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           TV +R  V DTGIGIP   L  +F K+ Q     +R Y GTGLGLAICK ++ELMGG++ 
Sbjct: 414 TVDLRISVTDTGIGIPPEKLEAIFEKFEQADNTSSRMYEGTGLGLAICKTIIELMGGKIG 473

Query: 649 VTSKVHCGSTFTFILPYQVSPIEENSDDPD-DLSDMAD-QDSVTDDVTAGFFQFQPRTLG 706
           VTS++  G+  TF +       +  S  P  D +++A  + ++ DD          R L 
Sbjct: 474 VTSELGRGA--TFFIDINYKIDDRASLRPTIDTAELAGARIAIVDDNATNL-----RILS 526

Query: 707 SLFSSNGT-----SRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSV 761
              ++  T     S  K++            +     T Y  P  N       +E    +
Sbjct: 527 EQLAAWNTEIFAFSSGKEIFQWLDSRGEGEALPDVIITDYQMPEMN------GIELGLGI 580

Query: 762 AEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQT 821
                    P    S    P+ E   S      +  ++W   P              ++T
Sbjct: 581 RARTGFPPIPIIMLSSVCAPKEEGSKS------LPLSAWLVKPIRSLQLAEYVFEAKMKT 634

Query: 822 SKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQ 881
            +  + + + E   K DR S S SS    + ET       IL+V+DN +N +V  +M+K 
Sbjct: 635 GRFGDVEALAE--AKADR-SISASSDPDAICET-------ILVVDDNLVNQLVITNMLKG 684

Query: 882 LGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAG 941
               I   +NG +A+      + D+I MDV MPVMDGL+ATR IR  E            
Sbjct: 685 WATEILTASNGEDAIEKFSAYSPDIIFMDVSMPVMDGLEATRRIRGME------------ 732

Query: 942 IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
            +Q +P++         PI+  TA+A+ E  + C   GM   ++KPV
Sbjct: 733 ADQNLPTT---------PIVGATAHAMDEDRQRCLKAGMVDVLTKPV 770



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/189 (40%), Positives = 110/189 (58%), Gaps = 23/189 (12%)

Query: 329 DVTDQVRKR---------EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSH 379
           D+ D++++R         E+ A L E  AV KA+   L K+             LA MSH
Sbjct: 229 DMLDEIQRRDENLEKTVEERTADLEE--AVTKAEAASLAKS-----------AFLANMSH 275

Query: 380 EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
           EIR+P+ GV+ MAE+L +T+LD  QR+L+G ++SSG  ++ +INDILD SK+E+G   L 
Sbjct: 276 EIRTPMNGVLGMAELLMSTELDTYQRELIGTIMSSGTSLVTIINDILDFSKIEAGKFSLN 335

Query: 440 AAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
              F  RE +++V    A  + +K L L       +P  V  D  R+RQ++TNL+ NAIK
Sbjct: 336 EEPFNLREGIENVATLMAGRAAEKDLELFVRYDPSLPEGVFTDGGRLRQVITNLVGNAIK 395

Query: 499 FTPEGKVGI 507
           FT EG+V I
Sbjct: 396 FTDEGQVLI 404


>gi|402488931|ref|ZP_10835736.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium sp. CCGE 510]
 gi|401812115|gb|EJT04472.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium sp. CCGE 510]
          Length = 1125

 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 116/199 (58%), Gaps = 10/199 (5%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           +  VF   GE     ++ MD T  V   +    L  ++    ++E EL   +   E   R
Sbjct: 533 ISTVFHVGGE----RWVNMDAT--VSTGQHWVALFTDVTELMSREEELRHLLSRAEAADR 586

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ +L +INDILD 
Sbjct: 587 AKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDTRQKTFVDIIVKSGNALLTIINDILDF 646

Query: 429 SKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           SK+++G MKL  A F   E V+ V  L ++ A+ + I +L    A D+P  VIGD  R R
Sbjct: 647 SKIDAGQMKLRRAAFDITEAVEDVATLLSSHAAEKNIELLV-RAAPDLPAAVIGDAGRFR 705

Query: 487 QILTNLISNAIKFTPEGKV 505
           QI+TNL+ NA+KFT  G V
Sbjct: 706 QIVTNLVGNAVKFTERGHV 724



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 22/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN++N +V   +++  G S  VV+NG  AV A +     +I+MDV MPVM+G +A
Sbjct: 996  VLVAEDNEVNQIVFTQILQGTGLSFLVVDNGELAVAAWERHTPRIIMMDVSMPVMNGHEA 1055

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR+ E                           R+PII +TA+AL    + C   GMD
Sbjct: 1056 TRTIRARE----------------------KGQGHRVPIIGVTAHALESDRDLCLDAGMD 1093

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP++ + L+E + Q+ 
Sbjct: 1094 DYMSKPISPELLEEKIRQWL 1113



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 47/73 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP   L ++F K+ QV A   R++ GTGLGLAI   LV+L GG L V S+   
Sbjct: 744 IEDTGIGIPREKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVESEWSK 803

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 804 GSVFTVNLPFAVA 816


>gi|182412655|ref|YP_001817721.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839869|gb|ACB74121.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 682

 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 13/221 (5%)

Query: 302 GSKTFL-IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKT 360
           G +T++ + + PV  ++G   G   +  D+T+   KRE  A LR+  A  +   T+    
Sbjct: 92  GRETWMQLALAPVVLRNGRKQGFVLVQDDLTE---KREHYAMLRQANAAMEDLNTQFEHA 148

Query: 361 I----HITEETMRAKQ----MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMI 412
           I     +  E   A Q     LA MSHEIR+PL GV+ M  +L  T+LD EQR+ L  + 
Sbjct: 149 IDRAQQLAMEAAVANQAKSAFLAMMSHEIRTPLNGVIGMTGVLEATELDDEQRECLRTIK 208

Query: 413 SSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIA 471
            SG+ +L ++ND LD SK+E+G ++LE   F  R   +   +  A  +  K L L  D+A
Sbjct: 209 MSGEALLAVVNDTLDYSKIEAGRLELEQVDFDLRGCAEEAAELLAGKAFAKKLELVCDVA 268

Query: 472 DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           +D P  +IGD +R+RQI  NL+ NA+KFTP G++ +++ V+
Sbjct: 269 EDAPRRIIGDPVRLRQIFVNLLGNAVKFTPAGEIVLQIRVL 309



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 177/416 (42%), Gaps = 76/416 (18%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            ++  V DTGIGI  +    LF+ + QV +   R+YGGTGLGLAI K+L ELMGG + V S
Sbjct: 318  LQLGVRDTGIGIAADKQHRLFQSFSQVDSSTTRQYGGTGLGLAISKRLAELMGGTMWVES 377

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSS 711
            +V  GS F F        I     DP           +T        + + R L  +   
Sbjct: 378  EVGRGSAFLFT-------IRARRADP-----------ITRPPPPQPLKGR-RVL--VVDD 416

Query: 712  NGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEP 771
            N TSR   +L   + +  A  +   S T       N ++    L D             P
Sbjct: 417  NATSRD--VLARHLRYFGAEPICVASTTDGDARLANGERFALALVDQ----------QMP 464

Query: 772  ESSFSHSPEPENETEVSRGKQCHV----ETTSWFQNPATESTSHSEANREMIQTSKTNEP 827
            E +     +       +RGK C +            PA +   H    RE    S     
Sbjct: 465  EGA----GDAWARAVATRGKPCPILLLHAVGERTNEPAIDGIVHKPIRRE----SLGERA 516

Query: 828  QKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSID 887
             ++   + KP  +  +P   +  +    P    +IL+ EDN +N  VA+  + +LG++++
Sbjct: 517  SQVLGARIKPLAVP-APVDDTRGMAVRMPL---RILMAEDNVVNQTVARHQLARLGYAVE 572

Query: 888  VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFE--DTGNWDAAAEAGIEQA 945
            +V NG+EAV     +++D+ILMDV MP +DG +ATR IR+    D+  W           
Sbjct: 573  MVPNGLEAVLLATERDFDVILMDVQMPELDGFEATRRIRAVRPLDSLPW----------- 621

Query: 946  MPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                          IIA+TA   +         GM+ +++KP+  + L++ L + +
Sbjct: 622  --------------IIALTAGVGTADRSVARTAGMNEYLAKPLRHETLQQALARAY 663


>gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 885

 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/241 (33%), Positives = 130/241 (53%), Gaps = 24/241 (9%)

Query: 277 QDFKREVLEKGLPAKREITFETELFGSKTFL-IYVEPVFSKSGETIGVNYMGMDVTDQVR 335
            D  + VL  G+P+   +       G++ +L +   PV S  G  +G   +  D++D  R
Sbjct: 161 HDIDQRVLSAGVPSVNNVAHFVFNNGTRHWLQMSTVPVRSGQGLVVGSVSVARDISDLKR 220

Query: 336 -KREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEI 394
            + E M  ++E  A  +AK                  + LA MSHEIR+P+ GV+  +E+
Sbjct: 221 TESELMTAMKEAQAANRAK-----------------GEFLAAMSHEIRTPINGVIGASEL 263

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
              T+LD EQR  L  +I  G+ +L L+ND+LD SK+E+G + LE   F P  V++ V++
Sbjct: 264 CQETELDAEQRAYLDTVIQCGNTLLSLVNDVLDFSKIEAGQLNLEQLNFNPEAVLEEVIE 323

Query: 455 TAAASLQKI---LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
             A +++K    L+L  D  D +P  VIGD  R++QI  NL+ NA+KFT  G++ +  ++
Sbjct: 324 EFAGTVKKKGIELILSCD--DRMPKYVIGDPTRLKQIFYNLLGNAVKFTEAGEIVLSAHI 381

Query: 512 V 512
           V
Sbjct: 382 V 382



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 87/159 (54%), Gaps = 23/159 (14%)

Query: 842 QSPSSSSAEV--PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
           +SP     +V   E +      ILL EDN++N  +AK  +K+LGH + V  NG EA+  V
Sbjct: 609 RSPLCGDLDVSAAEAEKASTLHILLAEDNEVNQNIAKRRLKKLGHEVTVAVNGHEALEQV 668

Query: 900 QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
              ++D ILMD+ MP MDG +AT+ IR+ E                    G S HF    
Sbjct: 669 AQHDFDCILMDIQMPGMDGYEATQEIRNLE-----------------IQDGRSRHF---- 707

Query: 960 IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
           I+AMTA+A+   AE CFAN MD ++SKP   ++L+E LE
Sbjct: 708 IVAMTAHAMEGDAERCFANDMDEYISKPFRVERLQEVLE 746



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 51/77 (66%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           IR  V DTGIGI E     +F  + Q      R+YGGTGLGLAICK+L ELM G L+V S
Sbjct: 391 IRFKVRDTGIGISETRREAIFSSFTQEDMSTTRRYGGTGLGLAICKELTELMAGSLSVDS 450

Query: 652 KVHCGSTFTFILPYQVS 668
           +V  GSTFT  +P+++S
Sbjct: 451 RVGEGSTFTLEVPFELS 467


>gi|116620870|ref|YP_823026.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224032|gb|ABJ82741.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 1092

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 150/295 (50%), Gaps = 31/295 (10%)

Query: 241 ELRYRFIYNHFP-SLHEEDILGKTDVEIFSG---AGVKESQDFKREVLEKGLPAKRE--- 293
           E RYR ++   P ++HE D  G       +G    G  ES+   R   E   P  RE   
Sbjct: 444 EERYRMLFEEAPVAIHEIDRDGLVTRINRAGRMLCGYSESEIIGRHASEFVAPHYREESR 503

Query: 294 ITFETELFGSKTF-------------LIYVE----PVFSKSGETIGVNYMGMDVTDQVRK 336
                ++ G++               L+ VE     +F   GE  G+    +D+T++   
Sbjct: 504 AAVHAKMKGTRPLAPFERHYQRKDGRLLRVEVHETAIFDHGGEIQGLRSCLIDLTERYEA 563

Query: 337 REKMAKLREEIAVQ-KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEI 394
           +E++    +  A+Q +   + L   +    +  R K Q LA MSHEIR+P+ GV+ M E+
Sbjct: 564 QERL----DAFALQLQQNNSALALALESARQATRLKSQFLANMSHEIRTPMNGVLGMTEL 619

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
           L  + L  EQR L   +  SG+ +L +INDILD SK+ESG ++LEA  F P   ++ V++
Sbjct: 620 LVQSGLTEEQRSLALSVTQSGEHLLAIINDILDFSKIESGKLELEATPFDPTATIEAVIE 679

Query: 455 TAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
             A +   K L L   IA ++P  V GD  R+RQ+L NL+ NA+KFT EG++ I+
Sbjct: 680 LMAPTAHIKNLELTYWIAAEMPARVRGDAARLRQVLLNLLGNALKFTAEGEIAIQ 734



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 28/185 (15%)

Query: 821  TSKTNEPQKICEMQEKPDRISQ--SPSSSSAEVPETKP---KPKPKILLVEDNKINVMVA 875
             S  ++P K   + E   RI Q  +  +S+A VP         + ++L+ EDN +N  VA
Sbjct: 924  ASSIHKPVKPEVLYECLSRILQPVATLASAARVPAASSPLHAARGRVLIAEDNAVNQRVA 983

Query: 876  KSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
            +  +   G   DVV+NG EA+ A+   NY L+LMD  MP MDG  ATR +R  E      
Sbjct: 984  RLQVAHCGFDSDVVSNGQEALDALSHMNYALVLMDCQMPGMDGYAATRELRRRE------ 1037

Query: 936  AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKE 995
                             N  + +P+IA+TANA +   E C   GMD  +SKPV+ + L  
Sbjct: 1038 -----------------NGARHLPVIALTANAFATDREACLEAGMDDHLSKPVSLRSLAA 1080

Query: 996  CLEQY 1000
             L+++
Sbjct: 1081 ILDRW 1085



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 45/70 (64%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTGIGIPE A+P LF  + Q      R++GGTGLGL I K +VELM G + + S
Sbjct: 744 LRVSVADTGIGIPEAAIPHLFAAFTQADNSTTRRFGGTGLGLTIAKSIVELMDGEIGIES 803

Query: 652 KVHCGSTFTF 661
           +   GSTF F
Sbjct: 804 RYGHGSTFWF 813


>gi|374365592|ref|ZP_09623680.1| PAS/PAC sensor hybrid histidine kinase [Cupriavidus basilensis
           OR16]
 gi|373102884|gb|EHP43917.1| PAS/PAC sensor hybrid histidine kinase [Cupriavidus basilensis
           OR16]
          Length = 813

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 160/354 (45%), Gaps = 81/354 (22%)

Query: 319 ETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKA--------KETELNKTIHITEETMRA 370
           E +GV  +G+D+T+QV    ++  L + +  +             EL       E    A
Sbjct: 12  EVVGVGAVGIDITEQVEANHRLTFLSQTLERRVEERTRELAQANAELVVAKQEAESAAHA 71

Query: 371 K-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLS 429
           K   LA MSHEIR+P+  V+ MA +   T+LD +QR  L  +  SG  +L++I+DILDLS
Sbjct: 72  KASFLANMSHEIRTPMNAVIGMAHLALRTRLDDKQRGYLEKIQHSGQHLLEIIDDILDLS 131

Query: 430 KVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           K+E+G +++E   F               SL+++L              + D++  R + 
Sbjct: 132 KIEAGKLEIERVDF---------------SLERML------------RTVSDLVAERAVA 164

Query: 490 TNLISNAIKFTPEGKVGIKLYVVPEPPFAKEG--LKQKSKAYQSATDAVKEEKHQPKSQT 547
            +L              + + V P+ P +  G  L+ +      A +AVK   HQ     
Sbjct: 165 KHL-------------ELIVEVAPDVPDSLRGDPLRLRQILINFANNAVKF-THQ----- 205

Query: 548 ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
              +     ++HG G                      D +  + +R +V DTGIGI    
Sbjct: 206 --GEIVIRVERHGAG----------------------DSQPRIRLRFEVRDTGIGIDAAT 241

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
              LF+ + Q  A   R+YGG+GLGLAIC++LVELMGG L V S +  GS F F
Sbjct: 242 CSRLFQSFEQADASTTRRYGGSGLGLAICRRLVELMGGTLGVQSTLGQGSNFWF 295



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 24/144 (16%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            P  ++LLVEDN IN  VA  +++  G   D   NG  A++ +Q   YDL+LMDV MPVMD
Sbjct: 466  PSARVLLVEDNDINREVAVHLLQAAGIYPDTAENGAVALNLLQAGAYDLVLMDVQMPVMD 525

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +ATR IR                   +P+      F  +P++AMTANAL E    C  
Sbjct: 526  GFEATRHIRE------------------IPA------FASLPVVAMTANALPEDRARCLE 561

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             GM+  ++KP++       L Q+ 
Sbjct: 562  AGMNDHIAKPISPPAFYAMLRQWL 585


>gi|431926781|ref|YP_007239815.1| signal transduction histidine kinase [Pseudomonas stutzeri RCH2]
 gi|431825068|gb|AGA86185.1| signal transduction histidine kinase [Pseudomonas stutzeri RCH2]
          Length = 917

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/416 (26%), Positives = 192/416 (46%), Gaps = 71/416 (17%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  V DTGIG+ +  L  LF+ + Q     +R+ GGTGLGL I K+L+E MGG + V S
Sbjct: 436  LRISVQDTGIGLTDQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDS 495

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSS 711
                GS F   L      + +  DD +DL   A                Q R +  L   
Sbjct: 496  IPDEGSEFWISLS-----LPKARDDVEDLPHPA---------------LQGRRIALLEQH 535

Query: 712  NGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEP 771
                ++ +    S+G     +V+ F        +   Q++++ L D   +   A  + +P
Sbjct: 536  PLARQALQHQLESLGL----EVHTFDTLDQMQAAIGAQRQSSQLIDLAVLGVTAREI-QP 590

Query: 772  ESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSK-------T 824
            E+      E E     + G +C V        P TE   + +   E+   ++       T
Sbjct: 591  EALSRRLMEIE-----ALGCKCVVLC------PTTEQGHYHDTLPEVHSYTQLQGKPACT 639

Query: 825  NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
             + Q++     +P++   +P +++       P    ++L V+DN  N+++ K+++  +G 
Sbjct: 640  RKLQRVLVELVRPNQTYAAPVAAA-------PSRAARVLCVDDNPANLLLVKTLLGDMGA 692

Query: 885  SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQ 944
             +  V+NG  A+ AV+  ++DL+LMDV MP MDG + T  IR +E T             
Sbjct: 693  EVVAVDNGPAALDAVKQHSFDLVLMDVQMPGMDGRQTTEAIRHWEHT------------- 739

Query: 945  AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                SGS+     +PIIA+TA+AL+        +GMD +++KP++ ++L + + ++
Sbjct: 740  ----SGSTP----LPIIALTAHALANEKRSLLQSGMDDYLTKPISDRQLAQVVLKW 787



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 91/141 (64%), Gaps = 1/141 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+PL G++   ++L  + L   Q+  LG +  S D +L +IN+ILD SK+
Sbjct: 286 EFLANMSHEIRTPLNGILGFTQLLQKSDLTPRQQDYLGTIEKSADSLLGIINEILDFSKI 345

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + L++  F  R++++  L   A A+  K L L   +  D P+ ++GD LR++Q+LT
Sbjct: 346 EAGKLVLDSIPFNLRDLIEDTLTILAPAAHTKQLELVSLVYRDTPLSLVGDPLRLKQVLT 405

Query: 491 NLISNAIKFTPEGKVGIKLYV 511
           NLISNAIKFT EG + ++  V
Sbjct: 406 NLISNAIKFTNEGTIAVRAMV 426


>gi|441505531|ref|ZP_20987514.1| Signal transduction histidine kinase [Photobacterium sp. AK15]
 gi|441426764|gb|ELR64243.1| Signal transduction histidine kinase [Photobacterium sp. AK15]
          Length = 815

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 141/312 (45%), Gaps = 78/312 (25%)

Query: 369 RAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           +  + LA MSHEIR+P+ G++ ++ ++   ++  +Q++ + ++ +S   +L LINDILD 
Sbjct: 246 KKSEFLANMSHEIRTPMNGIIGLSSLMKEMEMPADQKEYISMLHTSSLSLLDLINDILDF 305

Query: 429 SKVESGVMKLEAAKFRPREV---VKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           SK+E+G ++LE       E+   V+ V    AA  +K L  +  I   +   ++GD  ++
Sbjct: 306 SKIEAGRLELEHTALNLFELNKEVESVFMVRAA--EKRLAFQCSIDRSITPMLLGDATKL 363

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
           RQ+L NL+SNAIKFT +G V ++                           ++ E   P+S
Sbjct: 364 RQVLNNLVSNAIKFTDQGYVHLQ---------------------------IQRENESPES 396

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
            T      F     G G    KHD                                    
Sbjct: 397 VTVR----FVVSDTGIGVPADKHD------------------------------------ 416

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF--IL 663
                +F K+ Q      RKYGGTGLGLAIC+++V +MGG L ++S    GS F F   L
Sbjct: 417 ----AIFDKFQQADGSTTRKYGGTGLGLAICREIVRMMGGELKISSDTGKGSLFYFSVTL 472

Query: 664 PYQVSPIEENSD 675
              V P  E +D
Sbjct: 473 EKNVLPEAEEND 484



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 23/145 (15%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            +P P +L+VED  +N  VAK M+++LG  +++ NNG EA+   + Q++D+I MD  MPVM
Sbjct: 678  EPLPVVLVVEDTAVNQKVAKMMLEKLGVRVEIANNGAEAISRFREQSFDVIFMDCQMPVM 737

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG  AT+ IR+ E  G+                       RIPIIA+TAN + E  E+CF
Sbjct: 738  DGFAATKAIRTEETEGH-----------------------RIPIIALTANVVKEEKEKCF 774

Query: 977  ANGMDSFVSKPVTFQKLKECLEQYF 1001
            A GMD FVSKPV+ + L   LE+Y 
Sbjct: 775  AAGMDDFVSKPVSQKMLAVMLEKYL 799


>gi|171060737|ref|YP_001793086.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778182|gb|ACB36321.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1333

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 181/431 (41%), Gaps = 65/431 (15%)

Query: 578  HGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICK 637
             G  + ED +  V +R +V DTG GI      +LF  + Q  A   R++GGTGLGLA+ +
Sbjct: 825  RGELLAEDRQ-RVQVRFEVQDTGEGIEPERFGSLFNAFEQADASTTRRHGGTGLGLALTQ 883

Query: 638  QLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGF 697
             LV LMGG + V S+   GSTF F     +    E  +    +     +  + DD+    
Sbjct: 884  HLVTLMGGEMGVRSEPGVGSTFWFT--AWLGRAAEAGERASAVPLQGLRALLVDDLPEAL 941

Query: 698  FQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSN----NRQKETA 753
                   +G      G     ++ P   G A+  +V   SE S   P +    + + E  
Sbjct: 942  -----SAIGDRLQHFGL----RIDPLDSGTAALQRVR--SEISAGRPYDVFLIDWRME-- 988

Query: 754  PLEDACSVAEVAETLSE--PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSH 811
            PL+   ++ ++ E L    P +    +       + +RG    V+  +    P T S  H
Sbjct: 989  PLDGIETMRQLRELLGAGMPPAILVTAFNNTAMWQQARG----VQADAVLVKPITASALH 1044

Query: 812  SEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKIN 871
                R +   S T              R ++       E    +     ++LL EDN IN
Sbjct: 1045 DTLMRVLRSRSAT--------------RSAEPAPPGQGEAQLLRRHAGQRVLLAEDNPIN 1090

Query: 872  VMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDT 931
              VA  +++ +G  ++   +G  AV     + YDLILMD+ MP MDG+ ATR IR     
Sbjct: 1091 QEVANELLQGVGLVVETAVDGASAVELACSRAYDLILMDMQMPEMDGIAATRAIR----- 1145

Query: 932  GNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
                  A  G              + IPI+AMTANA SE  + C   GM+  V+KPV   
Sbjct: 1146 ------ARLG--------------RAIPIVAMTANAFSEDRQACLDAGMNDHVAKPVDPG 1185

Query: 992  KLKECLEQYFP 1002
             L   L ++ P
Sbjct: 1186 TLYATLLRWLP 1196



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 149/304 (49%), Gaps = 18/304 (5%)

Query: 210 VEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVE 266
           +EE+++ L     F+  V    P ++G+ D +L  RF    Y  +  L  ++++G    E
Sbjct: 535 LEEVNRSLSEQQQFVRNVADAVPALVGYFDPQLYCRFANAAYLEWWGLRPDEVVGLHARE 594

Query: 267 IFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYM 326
           +      + ++   R  L    P  +     T+    +T + YV     + G+  G   +
Sbjct: 595 LIGDEMFRRNEPSMRAALRGESPRLQRALPHTDGSLRETLIAYVPD--RQDGQVRGFIVV 652

Query: 327 GMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPL 385
             D+T+     ++MA L  ++A +  +           E   RAK   LA MSHEIR+P+
Sbjct: 653 VSDITEIKVAEQQMAALNAQLAARAIE----------AEGATRAKSAFLANMSHEIRTPM 702

Query: 386 TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445
             ++ +  +++    D  QR+ LG + S+   +LQ+IND+LDLSK+++G + LE  +F  
Sbjct: 703 NAIIGLTHLMARDTRDSLQRERLGKIDSAAKHLLQIINDVLDLSKIDAGKLVLEDTEFNL 762

Query: 446 REVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK 504
            EV+    +    S  +K L L  D  D +P  + GD  R+ Q L NL++NA+KFT  G 
Sbjct: 763 DEVLSRAFELVGESANEKGLELVLD-TDRLPSHLRGDPTRLSQALINLLANAVKFTHAGW 821

Query: 505 VGIK 508
           V ++
Sbjct: 822 VRLR 825


>gi|94263808|ref|ZP_01287614.1| PAS [delta proteobacterium MLMS-1]
 gi|93455819|gb|EAT05986.1| PAS [delta proteobacterium MLMS-1]
          Length = 1049

 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 156/337 (46%), Gaps = 64/337 (18%)

Query: 326 MGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPL 385
           + +++T + +  E++ +  E++    A+  EL   +          + LA MSHEIR+P+
Sbjct: 479 VAVNITKRKQAEEELLQANEQLENATARANEL--AVQAEAANHAKSEFLANMSHEIRTPM 536

Query: 386 TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445
            G + M  +L +T+L  EQRQ  G++ SSG+ +L LINDILD SK+E+G  KLE      
Sbjct: 537 NGFIGMTMLLLDTELTEEQRQYAGIVKSSGESLLVLINDILDFSKIEAG--KLE------ 588

Query: 446 REVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
                  ++T    LQ +L       DD                    +    F    K 
Sbjct: 589 -------IETLDFDLQSLL-------DD-------------------FAATTAFKTHDK- 614

Query: 506 GIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEE-KHQPKSQTASDQNGFHDKKHGEGYQ 564
           G++L    EP    +      +  Q  T+ V    K   K + A        K  GE  Q
Sbjct: 615 GLELLCAAEPDVPVQLSGDPGRLRQILTNLVGNALKFTEKGEVA-----IRVKTVGEACQ 669

Query: 565 DHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHAR 624
             +             S+++D  A++ +R  V DTGIGIP + +  LF+++ QV A   R
Sbjct: 670 TGQ------------TSLNDD--ASLLLRFSVRDTGIGIPADKIGMLFQQFTQVDASTTR 715

Query: 625 KYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           KYGGTGLGLAI K L E+MGG + V S    GS F F
Sbjct: 716 KYGGTGLGLAISKHLAEMMGGEIGVESVEGQGSEFWF 752



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/144 (45%), Positives = 86/144 (59%), Gaps = 21/144 (14%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            K +ILL EDN  N  VA+ ++K+LG S D V NG EA+ A++   YDL+LMDV MP MDG
Sbjct: 787  KARILLAEDNITNQQVAQGILKKLGLSADAVANGREAIEALKTLPYDLVLMDVQMPEMDG 846

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            L+ATR IR+                   P S   N  + IPIIAMTA+A+    E+  A 
Sbjct: 847  LEATRQIRN-------------------PKSPIPN--RNIPIIAMTAHAMQGDREKFLAA 885

Query: 979  GMDSFVSKPVTFQKLKECLEQYFP 1002
            GM+ +V+KPV+ Q L E LE++ P
Sbjct: 886  GMNDYVAKPVSPQDLAEALEKWLP 909


>gi|417857753|ref|ZP_12502810.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens F2]
 gi|338823757|gb|EGP57724.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens F2]
          Length = 1232

 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 105/161 (65%), Gaps = 2/161 (1%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL + +   E   RAK + LA MSHEIR+P+ GV+ MAE+L+ +KLD  Q+    
Sbjct: 662 KMREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSKLDTRQKTFTD 721

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEG 468
           +++ SG+ +L +INDILD SK+E+G M+L +  F P E V+ V+   ++A+L+K + L  
Sbjct: 722 IIVKSGNALLTIINDILDFSKIEAGQMRLRSVPFDPAEAVEDVVSLLSSAALEKDIELVV 781

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            I      +V+GD  R RQI+TNL+ NA+KFT  G V I+L
Sbjct: 782 RIDPSAFGKVMGDAGRFRQIVTNLVGNAVKFTETGHVLIEL 822



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 190/435 (43%), Gaps = 65/435 (14%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            EA + +R  V D+GIGIP + L T+F K+ QV     R++ GTGLGLAI   L+ L  G 
Sbjct: 831  EAILSLR--VEDSGIGIPADKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLIGLFDGV 888

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENSDDP------DDLSDMADQDSVTDDVTAGFFQF 700
            + V S+V  GSTF   +P+QV+  E   D P      DD+  +   D   +DV       
Sbjct: 889  INVVSEVGTGSTFEVNIPFQVT--ERRRDVPLPAMAIDDIRVLVIDD---NDVNRRILTE 943

Query: 701  QPRTLG--SLFSSNGTSRSKKLL-PNSIGFASAHKVNGFSETSYSFPSNN------RQKE 751
            Q RT G       +G S    L    S+GFA    +       Y  P  N      R + 
Sbjct: 944  QLRTWGIDGHAVEDGPSGIAVLQEAASLGFAIDAII-----LDYHMPVMNGLDVVERIRA 998

Query: 752  TAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSH 811
             +  +D   V   +  +   E+ F         T++S   Q H+   +  +     ST  
Sbjct: 999  DSRFDDIAIVFLTSMDVVGDETLF---------TDLS--IQAHLMKPA--RARLLRSTLF 1045

Query: 812  SEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPK-----ILLVE 866
                   ++ ++ + P+   E    P R    P+  +          + +     +L+ E
Sbjct: 1046 DVVRDVRLKRARQHPPKMGAEGGNGPVRTEGGPAEKAQRPAPPAAPDRRRPCLVDVLVAE 1105

Query: 867  DNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIR 926
            DN +N +V   +++Q G    +V NG +AV A +  N  +ILMDV MPVM+G +AT L  
Sbjct: 1106 DNDVNQIVFTQILQQAGLRFLIVGNGKKAVQAWEEHNPAVILMDVSMPVMNGHQAT-LAI 1164

Query: 927  SFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSK 986
               +    D                    + +PII +TA+      E+C A GMD ++SK
Sbjct: 1165 RAAEQAAADG-------------------RHVPIIGVTAHTQDADREQCLAAGMDDYLSK 1205

Query: 987  PVTFQKLKECLEQYF 1001
            P++ + L++ + Q+ 
Sbjct: 1206 PISPEILEDKIAQWL 1220


>gi|153837192|ref|ZP_01989859.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|149749609|gb|EDM60355.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
          Length = 882

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 179/406 (44%), Gaps = 69/406 (16%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + D+GIGI  + L T+F  + Q     +R++GGTGLGLAIC+QLV +MGG+L  TS    
Sbjct: 540 IKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGGKLVATSTKGV 599

Query: 656 GSTFTFILPYQVSPI-EENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGT 714
           G+ F F +  +  P+   +SD       + D  +  + +       Q   +G     N  
Sbjct: 600 GTCFGFSIEVEALPLFGWHSDVVKRGLFICDNYAYAEQIVQECRLAQIELVG----VNSL 655

Query: 715 SRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESS 774
           S +K L                 +    F  N+ Q       D C ++E+AE        
Sbjct: 656 SEAKAL---------------DEDFDVIFLCNDGQMNI----DGC-LSELAEVY------ 689

Query: 775 FSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQ 834
                      +V R   C    TS + N       H+   +  +     +  +++ +++
Sbjct: 690 -----------DVRRLVVCQHHLTSSYTNA---ENVHAVLTQPFLGNRFKHAIEELAKLE 735

Query: 835 EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
           +   R + +  +S AE      +   +IL+ EDN +N  +A   + + G+   + +NG E
Sbjct: 736 KNTLRDNVTNIASRAE--SKISRTHRRILIAEDNLMNQKIASFFLDKAGYDYLITSNGQE 793

Query: 895 AVHAV-QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
           A+ A+ + + +D ILMD  MPVMDGL AT+ IR +E         + G            
Sbjct: 794 ALDAITKGEQFDAILMDCMMPVMDGLTATKEIRRWEK--------KVGC----------- 834

Query: 954 HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
             K+  IIA+TA+ L E    CFA GMD+++ KP    +L E   +
Sbjct: 835 --KKTTIIALTASVLEEDIHNCFAAGMDAYLPKPYKSNQLFELFNE 878



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 107/168 (63%), Gaps = 13/168 (7%)

Query: 349 VQKAKETELNKTIHITEETM---RAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           V + K+ + ++ +H  E  +   RAK + LA MSHEIR+PL G++ M EILS ++L   Q
Sbjct: 358 VVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELSPHQ 417

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH---VLQTAAASLQ 461
           ++++  + +S   +L L+NDILDLSK+ESG ++L   +   REVV     + Q+ A S Q
Sbjct: 418 QEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQSKATSKQ 477

Query: 462 KILMLEGDIADD--VPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
               LE DI+ D  +P  V+ D  RI+QI+TNL+SNA+KFT +G + +
Sbjct: 478 ----LELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQGYISV 521


>gi|418937797|ref|ZP_13491393.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium sp.
           PDO1-076]
 gi|375055481|gb|EHS51733.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium sp.
           PDO1-076]
          Length = 938

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/167 (45%), Positives = 109/167 (65%), Gaps = 6/167 (3%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL   +  +E   RAK + LA MSHEIR+P+ GV+ MAE+LS + LD  Q+  + 
Sbjct: 669 KEREAELEVLLAKSEAADRAKSEFLANMSHEIRTPMNGVLGMAELLSKSILDTRQKTFVD 728

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKI-LML 466
           +++ SG+ +L +INDILD SK+++G ++L  A F P E ++ V  L +AAAS + I L++
Sbjct: 729 IIVKSGNALLTIINDILDFSKIDAGQLRLRKAPFDPVEAIEDVATLLSAAASEKDIELLV 788

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
            GD A  V   V+GD  R RQI+TNL+ NAIKFT +G V I +   P
Sbjct: 789 SGDQA--VRHTVLGDPGRFRQIVTNLVGNAIKFTEKGHVLIDVSTRP 833


>gi|392420859|ref|YP_006457463.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            CCUG 29243]
 gi|390983047|gb|AFM33040.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            CCUG 29243]
          Length = 908

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 194/419 (46%), Gaps = 77/419 (18%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  V DTGIG+ +  L  LF+ + Q     +R+ GGTGLGL I K+L+E MGG + V S
Sbjct: 426  LRISVQDTGIGLTDQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDS 485

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSS 711
                GS F   L      + +  DD +DL   A                Q R + +L   
Sbjct: 486  IPDEGSEFWISLS-----LPKARDDIEDLPHPA---------------LQGRRI-ALLEQ 524

Query: 712  NGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACS------VAEVA 765
            +  +R           A  H++       ++F + ++ +ET   +   S      V  V 
Sbjct: 525  HPLARQ----------ALQHQLESLGLEVHTFDTLDQMQETISAQRQGSQLIDLAVLGVT 574

Query: 766  ETLSEPESSFSHSPEPENETEVSRGKQCHV--ETT--SWFQNPATESTSHSEANREMIQT 821
                EP++      E E     + G +C V   TT    + +   E+ S+++   +   T
Sbjct: 575  GREIEPDALSRRLMEIE-----ALGCKCVVLCPTTEQGHYHDALPEAHSYTQLQGKPACT 629

Query: 822  SKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQ 881
             K    Q++     +P++    P++++ + P        ++L V+DN  N+++ K+++  
Sbjct: 630  RKL---QRVLVALVRPNQSYPEPTAAAPDRPA-------RVLCVDDNPANLLLVKTLLGD 679

Query: 882  LGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAG 941
            +G  +  V+NG  A+ AV+   +DLILMDV MP MDG +AT  IR +E T N        
Sbjct: 680  MGAEVVAVDNGPAALDAVKQHAFDLILMDVQMPGMDGRQATEAIRHWEHTNN-------- 731

Query: 942  IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
               + P          +PIIA+TA+AL+        +GMD +++KP++ ++L + + ++
Sbjct: 732  ---SAP----------LPIIALTAHALANEKRSLLQSGMDDYLTKPISDRQLAQVVLKW 777



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 91/141 (64%), Gaps = 1/141 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+PL G++   ++L  + L   Q+  LG +  S D +L +IN+ILD SK+
Sbjct: 276 EFLANMSHEIRTPLNGILGFTQLLQKSDLTPRQQDYLGTIEQSADSLLGIINEILDFSKI 335

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + L++  F  R++++  L   A A+  K L L   +  D P+ ++GD LR++Q+LT
Sbjct: 336 EAGKLVLDSVPFNLRDLIEDTLTILAPAAHTKHLELVSLVYRDTPLSLLGDPLRLKQVLT 395

Query: 491 NLISNAIKFTPEGKVGIKLYV 511
           NLISNAIKFT EG + ++  V
Sbjct: 396 NLISNAIKFTNEGTIAVRAMV 416


>gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
 gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
          Length = 1223

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 105/161 (65%), Gaps = 2/161 (1%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL + +   E   RAK + LA MSHEIR+P+ GV+ MAE+L+ + LD  Q+    
Sbjct: 651 KMREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFTD 710

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEG 468
           +++ SG+ +L +INDILD SK+E+G MKL +  F P E V+ V+   ++A+L+K + L  
Sbjct: 711 IIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKNIELVV 770

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            I   V  +V+GD  R RQ++TNL+ NA+KFT  G V I+L
Sbjct: 771 RIDPSVFGKVMGDAGRFRQVVTNLVGNAVKFTEMGHVLIEL 811



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 190/431 (44%), Gaps = 71/431 (16%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V D+GIGIP + L T+F K+ QV     R++ GTGLGLAI   LV L  G + V S+V  
Sbjct: 827  VEDSGIGIPADKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGTINVVSEVGK 886

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDS---VTDD--VTAGFFQFQPRTLG--SL 708
            GSTF   +P+ V+  E+  D P  L  MA +D    V DD  V       Q +T G    
Sbjct: 887  GSTFEVNIPFHVT--EKRRDAP--LLAMAIEDIRVLVIDDNDVNRRILAEQLKTWGIDGH 942

Query: 709  FSSNGTSRSKKLL-PNSIGFASAHKVNGFSETSYSFPSNN------RQKETAPLEDACSV 761
               +G S    L    S+GFA    +       Y  P  N      R +  +  +D   V
Sbjct: 943  AVQDGPSGIAVLQEAASLGFAIDAII-----LDYHMPVMNGLDVVERIRADSRFDDIAIV 997

Query: 762  AEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHS---EANREM 818
               +  +   ES F         T++S   Q H+        PA      S   +  R++
Sbjct: 998  FLTSMDVVGDESLF---------TDLS--VQAHL------MKPARARLLRSTLFDVVRDV 1040

Query: 819  IQTSKTNEPQKICEM-QEKPDRISQSPSSSSAEV---PETKP-KPKP---KILLVEDNKI 870
             Q     +PQ +     + P +    P+     V   P T P + +P    +L+ EDN +
Sbjct: 1041 RQKRARQDPQGLASGGSDAPVQPDNGPTDKKRRVVSPPTTVPDRRRPCLVDVLVAEDNDV 1100

Query: 871  NVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFED 930
            N +V   +++Q G    +V NG +AV A +  N  +ILMDV MPVM+G +AT L     +
Sbjct: 1101 NQIVFTQILQQAGLRFLIVGNGKKAVQAWEEHNPAVILMDVSMPVMNGHQAT-LAIRAAE 1159

Query: 931  TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTF 990
                D                    + +PII +TA+      E C A GMD ++SKP++ 
Sbjct: 1160 QAAADG-------------------RHVPIIGVTAHTQDADRELCIAAGMDDYLSKPISP 1200

Query: 991  QKLKECLEQYF 1001
            + L++ + Q+ 
Sbjct: 1201 EILEDKIAQWL 1211


>gi|452750390|ref|ZP_21950140.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            NF13]
 gi|452005763|gb|EMD98045.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            NF13]
          Length = 908

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 185/418 (44%), Gaps = 75/418 (17%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  V DTGIG+ +  L  LF+ + Q     +R+ GGTGLGL I K+L+E MGG + V S
Sbjct: 426  LRISVQDTGIGLTDQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDS 485

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSS 711
                GS F   L      + +  DD +DL   A                Q R +  L   
Sbjct: 486  IPDEGSEFWISLS-----LPKARDDIEDLPHPA---------------LQGRRIALLEQH 525

Query: 712  NGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEP 771
                ++ +    S+G     +V+ F        + + Q++++ L D   +      + EP
Sbjct: 526  PLARQALQHQLESLGL----EVHTFDTLDQMQETIDAQRQSSQLIDLAVLGVTGREI-EP 580

Query: 772  ESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKIC 831
            ++      E E     + G +C V        P TE   + +A           E     
Sbjct: 581  DALSRRLMEIE-----ALGCKCVVLC------PTTEQGHYHDA---------LPEAHSYT 620

Query: 832  EMQEKP------DRISQS---PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQL 882
            ++Q KP       R+  +   P+ S  E   T P    ++L V+DN  N+++ K+++  +
Sbjct: 621  QLQGKPACTRKLQRVLVALVRPNQSYPEPTATAPDRAARVLCVDDNPANLLLVKTLLGDM 680

Query: 883  GHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGI 942
            G  +  V+NG  A+ AV+   +DL+LMDV MP MDG + T  IR +E T N         
Sbjct: 681  GAEVVAVDNGPAALEAVKQHAFDLVLMDVQMPGMDGRQTTEAIRHWEHTSNSSP------ 734

Query: 943  EQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                           +PIIA+TA+AL+        +GMD +++KP++ ++L + + ++
Sbjct: 735  ---------------LPIIALTAHALANEKRSLLQSGMDDYLTKPISDRQLAQVVLKW 777



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 91/141 (64%), Gaps = 1/141 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+PL G++   ++L  + L   Q+  LG +  S D +L +IN+ILD SK+
Sbjct: 276 EFLANMSHEIRTPLNGILGFTQLLQKSDLTPRQQDYLGTIEQSADSLLGIINEILDFSKI 335

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + L++  F  R++++  L   A A+  K L L   +  D P+ ++GD LR++Q+LT
Sbjct: 336 EAGKLVLDSVPFNLRDLIEDTLTILAPAAHTKQLELVSLVYRDTPLSLLGDPLRLKQVLT 395

Query: 491 NLISNAIKFTPEGKVGIKLYV 511
           NLISNAIKFT EG + ++  V
Sbjct: 396 NLISNAIKFTNEGTIAVRAMV 416


>gi|428320948|ref|YP_007118830.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
           PCC 7112]
 gi|428244628|gb|AFZ10414.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
           PCC 7112]
          Length = 955

 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 152/293 (51%), Gaps = 29/293 (9%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTK-LDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            LA MSHE+RSPL  ++  +++++ ++ L  E ++ + ++ SSG+ +L LIN++LDLSK+
Sbjct: 447 FLANMSHELRSPLNAILGFSQLMTRSQTLSPEHQENISIIRSSGEHLLTLINNVLDLSKI 506

Query: 432 ESGVMKLEAAK---FRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQI 488
           ESG   L   K   +R    ++ + Q  A   Q  L L  D + DVP  +  D L++RQI
Sbjct: 507 ESGRTTLNPHKIDLYRLLNDLEDMFQLKAHDKQ--LQLVFDRSPDVPQYIETDELKLRQI 564

Query: 489 LTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTA 548
           L NL++N++KFT EG V +++             KQ     Q       E    PKS   
Sbjct: 565 LINLLNNSLKFTHEGGVAVRVS------------KQSLGRNQQPEGGNFEPSEVPKS--- 609

Query: 549 SDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608
           ++ +  +D K  +  Q   ++    TP     S      ++ ++  +V DTG GI  N L
Sbjct: 610 TENSAINDIKISQICQS--NNQIIATPNDDAAST-----SSFFLHFEVEDTGPGIATNEL 662

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
             +F  ++Q       +  GTGLGL I +Q VELMGG ++V S V  G+ F F
Sbjct: 663 DDIFEPFVQTKTGKDSQ-EGTGLGLPISRQFVELMGGEMSVCSAVGKGTNFKF 714



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 24/127 (18%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +IL+V+D ++N  +   ++  LG  +    NG EA+         LI MD+ MPVMDG +
Sbjct: 746 RILIVDDKQLNRQLLIKILSPLGFELKEATNGQEAIEIWDSWEPHLIWMDMRMPVMDGYE 805

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           AT+ I+    T    A A                     IIA+TA+ L E      + G 
Sbjct: 806 ATQYIKR---TIKGQATA---------------------IIALTASVLEEERAVILSAGC 841

Query: 981 DSFVSKP 987
           D+F+ KP
Sbjct: 842 DAFLRKP 848


>gi|262196966|ref|YP_003268175.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262080313|gb|ACY16282.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 798

 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 139/292 (47%), Gaps = 67/292 (22%)

Query: 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSK 430
            + L  MSHE+R+PL  V+ M E+L +T+LD EQR+   V+  +G  +L LI+D+LD+++
Sbjct: 565 SRFLNNMSHEMRTPLNAVIGMTELLIDTELDDEQREYAEVVTEAGVALLALIDDVLDVAR 624

Query: 431 VESGVMKLEAAKFRPREVVKHVLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           +ESG M LE A F  R  +  V+    A + +  L    ++A+DVP  +IGD  R+RQ+L
Sbjct: 625 IESGTMTLEEAPFSLRAAIGGVMSLLDARACEAGLRFASEVAEDVPDLLIGDAGRLRQVL 684

Query: 490 TNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTAS 549
            NL++NAIKFT +G V +                        A     EE   P   +  
Sbjct: 685 LNLVNNAIKFTEQGGVDL------------------------AVARAAEESEAPGDGSVV 720

Query: 550 DQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALP 609
            +    D                      G  + ED +A ++    V+       E A  
Sbjct: 721 LRFSVRDT---------------------GIGVPEDKQAVIF---KVF-------EQADM 749

Query: 610 TLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           +L R+Y           GGTGLGL I  +LV+LMGG L + S+   GS F+F
Sbjct: 750 SLSRRY-----------GGTGLGLPIAVELVQLMGGELALESEPERGSVFSF 790


>gi|218886966|ref|YP_002436287.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757920|gb|ACL08819.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 705

 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 176/375 (46%), Gaps = 43/375 (11%)

Query: 336 KREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEI 394
           +R ++    ++I  +K  E EL +     +     K + LA MSHEIR+PL G++   ++
Sbjct: 207 ERHRVYGTIKDITARKRAERELIEANRQAKSASETKSLFLANMSHEIRTPLNGILGALQL 266

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF---RPREVVKH 451
           L     D EQ     + I S   +  L+ D+LDLS+VE+G M + +  F   R  E V+ 
Sbjct: 267 LKADLADPEQAGYANLAIRSSQRLAHLLTDLLDLSRVEAGRMPVASEPFDLARLGEAVRE 326

Query: 452 VLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
           + Q    +  + L L+  +A  +P  V+GD  + RQIL NL+ NA+KFT  G V + L  
Sbjct: 327 LFQFELGT--RGLALDVQLAPGLPQTVLGDEGKTRQILFNLVGNALKFTERGGVRLSLSP 384

Query: 512 V---------PEPPFAKEGLKQ------KSKAYQSATDAV-----KEEKHQPKSQTASDQ 551
           +         P+ P   E L +      +S     A D+V                 + +
Sbjct: 385 LRGLPGLPDRPDQPDRPEQLDRSHPQPFRSGEAGGAGDSVTAAGGNGAGSNGAGGNGAGR 444

Query: 552 NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVW----IRCDVYDTGIGIPENA 607
            G      G   +D    D PG       ++DE  EAT      +   V DTG GIP+  
Sbjct: 445 QGIPGGPDGSDRRDGA--DRPG-------ALDET-EATAGEVAGVLFMVEDTGKGIPDAL 494

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
           L T+F  + Q    + R++ G GLGL+I ++LV L+GG + V S+   G+ F   LP++ 
Sbjct: 495 LRTIFDPFTQADNSYVRRHQGAGLGLSIVRRLVTLLGGTICVDSEEGRGTVFCVALPFRT 554

Query: 668 SPIEENSDDPDDLSD 682
           +   E  + P +++D
Sbjct: 555 A---ERCELPPEVAD 566



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 27/141 (19%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           ++LL ED+    +V + ++++ G+S+ +  +G +A+  +  +  D++LMD+ MP  DG+ 
Sbjct: 578 RVLLAEDDATTRLVGQRLLQKAGYSVTLAVDGDDALARLAAEEVDVVLMDIHMPNTDGIT 637

Query: 921 ATRLIRS---FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
           A   IR+   F D  N                        +PI+A+TA A++   E   A
Sbjct: 638 AASTIRTSPRFADKCN------------------------VPILAVTAAAMAGDRERFLA 673

Query: 978 NGMDSFVSKPVTFQKLKECLE 998
            G+D +V+KP     L E +E
Sbjct: 674 AGLDGYVAKPFDMADLVEEIE 694


>gi|357633951|ref|ZP_09131829.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|357582505|gb|EHJ47838.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 674

 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 153/360 (42%), Gaps = 80/360 (22%)

Query: 307 LIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEE 366
           +I V   F  SG  +G   M  ++TD+ +  E +      +A  K      NK+      
Sbjct: 249 IIAVSSEFDASGRFLGSVGMFTNITDRKQAEEALRLSEARLAAAKEAAEAANKS------ 302

Query: 367 TMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
                + LA MSHEIR+PL G++ M +I+ +T LD +QR  +   +  G  + +L+ DIL
Sbjct: 303 ---KSEFLANMSHEIRTPLNGLLGMLQIVEDTALDGDQRDCVVTALDCGRRLTRLLTDIL 359

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRI 485
           DLS+VESG + L A  F  REV   +    A +L Q+ L LE  I  DVP  ++GD  RI
Sbjct: 360 DLSRVESGKLVLVADPFSLREVFASIQTVFAVTLDQRGLALETAIHPDVPALLLGDEGRI 419

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
           RQIL NL+ NA+KFT  G + +                              E    P  
Sbjct: 420 RQILLNLVGNAVKFTRSGTITL------------------------------EAGWHPAD 449

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
           +T   +        G G    KHD                          V++T      
Sbjct: 450 ETGGRRLALAVGDTGIGIPHDKHD-------------------------TVFET------ 478

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
                    + QV A + R + G GLGL+I  +LV LMGG + + S+   G+    +LP 
Sbjct: 479 ---------FTQVDASNTRIHQGAGLGLSIVDRLVRLMGGTVLLDSEPGIGTMVMCLLPL 529



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 21/128 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +ILLVED +IN +   S+++  GH++    +G +A+     +  D +L+D+ MP MDGL+
Sbjct: 552 RILLVEDERINRLTVGSLLRNAGHTVLEAASGRQALDIFGRETVDAVLLDIQMPGMDGLE 611

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
              L+R        DAA         P + +       P+IA+TA+A+    E   A GM
Sbjct: 612 TLALLR--------DAALHG------PRAAT-------PVIALTAHAMVGDRERFLAAGM 650

Query: 981 DSFVSKPV 988
           D +++KPV
Sbjct: 651 DDYLAKPV 658


>gi|311748172|ref|ZP_07721957.1| sensory box histidine kinase/response regulator [Algoriphagus sp.
            PR1]
 gi|126576660|gb|EAZ80908.1| sensory box histidine kinase/response regulator [Algoriphagus sp.
            PR1]
          Length = 1356

 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 138/261 (52%), Gaps = 20/261 (7%)

Query: 257  EDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSK 316
            ED +G+   ++      KE    K E  + G+    E+ ++      + + I   P ++ 
Sbjct: 764  EDFIGRKATDLLLNESDKEKLLIKSESRKSGVSDSYELKYKRPNGEYRWWFISGAPNYND 823

Query: 317  SGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQML-A 375
              E IG   + +D+TDQ R  E++ + REE                  E++ RAK++  A
Sbjct: 824  KNELIGSIGIHLDITDQKRLEEELIRQREE-----------------AEKSKRAKEIFFA 866

Query: 376  TMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGV 435
             MSHEIR+P+  +V M E L+ + L+ +Q + +  +  S   ++ +I DILDLSK+E+G 
Sbjct: 867  NMSHEIRTPMNAIVGMGEQLAKSALNDQQNKYIKAIQDSASHLMVIIKDILDLSKLEAGK 926

Query: 436  MKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIE--VIGDVLRIRQILTNLI 493
            M +EA  F+P+ +++H  +   A  +   +    +  D  I   +IGD +RI QIL NL+
Sbjct: 927  MTIEAIGFKPKNIIEHTFEMMKAKAESKGLDYSILNYDSRINEVLIGDPIRISQILLNLL 986

Query: 494  SNAIKFTPEGKVGIKLYVVPE 514
            SNAIKFT +GKV ++ + + E
Sbjct: 987  SNAIKFTEKGKVVLQCHSISE 1007



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 80/147 (54%), Gaps = 26/147 (17%)

Query: 841  SQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            S  P   S+ + E   K K KIL+V+DN+ N +VA ++++Q        NNG EA+ A +
Sbjct: 1093 SDLPVEDSSSINEALLKGK-KILVVDDNEFNRLVATTILEQNEMLTITANNGEEAIQAAK 1151

Query: 901  CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
              + DLILMDV MPVMDG+ AT++IR        D  +                  +IPI
Sbjct: 1152 DHSLDLILMDVQMPVMDGMMATKVIRD-------DLQS------------------KIPI 1186

Query: 961  IAMTANALSESAEECFANGMDSFVSKP 987
            IA+TA A+    E+  ++GMD F++KP
Sbjct: 1187 IALTAFAMKGDREKYLSHGMDDFLAKP 1213



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            I+  V DTGIG+ ++ + + F KY+Q      RK+GGTGLGL+I K+LV+LMGG++ + S
Sbjct: 1014 IKFSVIDTGIGMDDDFVNSNFEKYVQEDTTITRKFGGTGLGLSISKELVQLMGGQMKIES 1073

Query: 652  KVHCGS--TFTFILP 664
            +   G+  +  F LP
Sbjct: 1074 QKGLGTIVSVNFKLP 1088


>gi|420242507|ref|ZP_14746545.1| PAS domain S-box [Rhizobium sp. CF080]
 gi|398067331|gb|EJL58853.1| PAS domain S-box [Rhizobium sp. CF080]
          Length = 1251

 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 105/163 (64%), Gaps = 6/163 (3%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E +L + +   E   RAK + LA MSHEIR+P+ GV+ MAE+L+ + LD  Q+  + 
Sbjct: 674 KQREEDLTRLLQRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDTRQKTFID 733

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILML 466
           +++ SG+ +L +INDILD SK+++G MKL  A F P E ++ V   L ++AA     L++
Sbjct: 734 IIVKSGNALLTIINDILDFSKIDAGQMKLRKAPFDPVEAIEDVATLLSSSAAEKDIELIV 793

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            GD +  +   V+GD  R RQI+TNL+ NA+KFT +G V I L
Sbjct: 794 RGDAS--IRETVMGDAGRFRQIVTNLVGNAVKFTEKGHVFIDL 834



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 25/163 (15%)

Query: 840  ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
            I++ P++     P  +  P   +L+ EDN++N +V   +++  G    +V NG EAV A 
Sbjct: 1103 ITEEPAAP-VSTPPMQAAPTLDVLVAEDNEVNQIVFTQILQTTGWLFQIVKNGAEAVEAW 1161

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFE-DTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
            +  +  +I+MDV MPVM+G +AT+ IR  E +TG                          
Sbjct: 1162 KQHDPAVIIMDVSMPVMNGHQATQKIRELEQETGT-----------------------HT 1198

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            PII +TA+AL    E CF  GMD ++SKP++ + L+  +  + 
Sbjct: 1199 PIIGVTAHALESDRELCFQVGMDDYLSKPISPEALEAKVRNWL 1241



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 48/72 (66%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTG+GIP+  L ++F K+ QV     R++ GTGLGLAI   L EL GG + VTS+V  
Sbjct: 850 IEDTGLGIPDEKLKSVFDKFSQVDTSSTRRHEGTGLGLAITAGLTELFGGYIDVTSEVGR 909

Query: 656 GSTFTFILPYQV 667
           GS FT  LP+QV
Sbjct: 910 GSVFTVHLPFQV 921


>gi|163760978|ref|ZP_02168056.1| two component sensor kinase/response regulator hybrid [Hoeflea
           phototrophica DFL-43]
 gi|162281759|gb|EDQ32052.1| two component sensor kinase/response regulator hybrid [Hoeflea
           phototrophica DFL-43]
          Length = 1337

 Score =  127 bits (319), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 108/172 (62%), Gaps = 6/172 (3%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I   K +E EL+  +   E   RAK + LA MSHEIR+P+ GV+ MAE+LS T+LD  Q
Sbjct: 744 DITATKQREAELHDLLGKAETADRAKSEFLANMSHEIRTPMNGVLGMAELLSRTELDTRQ 803

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQ 461
           R    +++ SG  +L +INDILD SK+++G + LE+  F  RE ++ V   + + AA   
Sbjct: 804 RTFADIIVKSGTALLTIINDILDFSKIDAGQLTLESQPFDLREAIEDVATLISSRAAEKD 863

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
             L++  D A  +P  ++GDV RIRQ++TNL+ NAIKFT  G V I++   P
Sbjct: 864 IELIVRIDPA--LPDCLVGDVGRIRQVMTNLVGNAIKFTETGHVLIEVTGSP 913



 Score = 92.8 bits (229), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 22/201 (10%)

Query: 802  QNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPK 861
            Q+PA     H  A    +  +   +     + Q+ P    QS  +  ++    +   + +
Sbjct: 1149 QSPADTVQDHDAAVMGAVAETGPADDAWSAKAQDLPSVSDQSAPAQQSDA--ERASGRLE 1206

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            I++ EDN++N +V   +++ LG    +V+NG  AV   +  N  LILMDV MPVM+G +A
Sbjct: 1207 IMVAEDNEVNQIVFTQILEDLGVKYQIVDNGGSAVELWKMANPALILMDVSMPVMNGHQA 1266

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T  IR                E A P+ G +      P+I +TA+AL+   E+C   GMD
Sbjct: 1267 TEAIRK--------------AEAADPALGHT------PVIGVTAHALTGDMEKCLQAGMD 1306

Query: 982  SFVSKPVTFQKLKECLEQYFP 1002
             ++SKP++ +KL E + ++ P
Sbjct: 1307 DYLSKPISPEKLAEKIREWLP 1327



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 9/87 (10%)

Query: 573 GTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLG 632
           G+P S G         +V +   V+DTGIGIP   L  +F K+ QV     R++ GTGLG
Sbjct: 911 GSPASEG---------SVDLTLRVHDTGIGIPPEKLDAVFDKFSQVDTSSTRRHEGTGLG 961

Query: 633 LAICKQLVELMGGRLTVTSKVHCGSTF 659
           LAI  +LV LM G ++  S    GS F
Sbjct: 962 LAITSRLVALMDGTISAESTPGEGSVF 988


>gi|85703660|ref|ZP_01034764.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
 gi|85672588|gb|EAQ27445.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
          Length = 711

 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 93/136 (68%), Gaps = 1/136 (0%)

Query: 374 LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433
           LA MSHEIR+P+ G++ MA++LS T L  EQ   +  M+ SGD +L +INDILD SK+E+
Sbjct: 213 LAKMSHEIRTPMNGIIGMADMLSETDLTPEQDSYVSTMVRSGDALLTIINDILDFSKIEA 272

Query: 434 GVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNL 492
           G + L +  +R RE+V+ V Q  A  + +K LML  D+A D+P  ++GD  R+RQIL N+
Sbjct: 273 GKLTLASEPYRLREIVEDVTQLLAPLAARKGLMLYSDVAPDLPEIMLGDAGRLRQILVNI 332

Query: 493 ISNAIKFTPEGKVGIK 508
             NA+KFT EG V ++
Sbjct: 333 AGNAVKFTLEGHVALR 348



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 10/96 (10%)

Query: 579 GNSMDEDLEATVWIRCD----------VYDTGIGIPENALPTLFRKYMQVSADHARKYGG 628
           GN++   LE  V +R            V+D+G+GIP +    +F  + QV     R +GG
Sbjct: 334 GNAVKFTLEGHVALRASAGGPGQIVIRVHDSGVGIPSDQQDKVFTAFEQVDNTATRSFGG 393

Query: 629 TGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP 664
           TGLGLA+ +QLV LMGG LT+ S+   G+ F   LP
Sbjct: 394 TGLGLAVSRQLVTLMGGTLTLHSREGEGTRFDITLP 429



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 21/127 (16%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           IL V DN  N ++ +    + G  + +  +G EAV        DL+LMDV MP MDG +A
Sbjct: 576 ILGVNDNATNRLLLERYFARSGAQLRLAASGAEAVALYGAAPADLVLMDVSMPGMDGYQA 635

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
           T LIR+ E              Q +P +    H     ++A+TAN L +  +E    GMD
Sbjct: 636 TGLIRTQEAA------------QDLPPA----H-----VVAVTANVLEQHRQEAHLAGMD 674

Query: 982 SFVSKPV 988
            F+ KP+
Sbjct: 675 GFLGKPL 681


>gi|357010234|ref|ZP_09075233.1| histidine kinase [Paenibacillus elgii B69]
          Length = 398

 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 137/292 (46%), Gaps = 72/292 (24%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+PL GV++MA++L  T L+ EQR+ +  +  SG  +L +INDILDLSK+E
Sbjct: 163 FLAMMSHEIRTPLNGVIAMADLLVETDLNAEQREYVDTIRRSGAALLYVINDILDLSKIE 222

Query: 433 SGVMKLEAAKFRPREVVKHVLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           SG M+++      R  +    +   A S  K L L  DI   +P  +IGD  R+RQ+L N
Sbjct: 223 SGKMEIKEEPLNLRTSLIETYEVFHAESRSKSLELTYDIDPAIPECIIGDESRLRQVLIN 282

Query: 492 LISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQ 551
           L+ NA+KFT +G V + + V+                         EE+ + + + +   
Sbjct: 283 LVGNAVKFTEQGGVHVSVAVLSH----------------------SEEQLELEFRVSDTG 320

Query: 552 NGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTL 611
            G  ++K G  +Q          P +  +S                            +L
Sbjct: 321 IGIPEEKRGMLFQ----------PFTQVDS----------------------------SL 342

Query: 612 FRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
            RKY           GGTGLGLAICK LV+LMGG + +      G+ F F +
Sbjct: 343 TRKY-----------GGTGLGLAICKNLVQLMGGHIALAPGSRRGAEFVFTI 383



 Score = 44.3 bits (103), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILLV+D   N++  +++++   + ++   +G EA+  +    + +I++DV MP MDG +
Sbjct: 6    RILLVDDQPENLLALEAVLEDQNYILEKATSGEEALRCLLKHEFAVIVLDVHMPGMDGFE 65

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA-LSESAEECFANG 979
              + I+S E T                        + +PII +TA     + A   ++ G
Sbjct: 66   TAQWIKSREKT------------------------RAVPIIFVTAAPDEQDQAFTAYSVG 101

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
               ++ KP   + LK  +E +
Sbjct: 102  AIDYIVKPFVPRMLKSKIEGF 122


>gi|399889500|ref|ZP_10775377.1| PAS/PAC sensor hybrid histidine kinase [Clostridium arbusti SL206]
          Length = 787

 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/304 (30%), Positives = 147/304 (48%), Gaps = 72/304 (23%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LA MSHEIR+P+ G++ +A++L  T+L+++Q + L ++ SS + +L +IN ILD+SK+
Sbjct: 414 QFLANMSHEIRTPMNGILGVAQLLEFTQLNKQQIEYLDILKSSSNHLLDIINSILDISKI 473

Query: 432 ESGVMKLEAAKFRPREVVKHVL-QTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++L    F  REV+  ++ + +  + +K + +   +   +  ++IGDV+R+ QIL 
Sbjct: 474 ESGKLQLNFEVFNIREVIDMIIKELSVIARKKGIEIMYYLDPFIKYDLIGDVVRLNQILI 533

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASD 550
           NLI+NA+KFT  G + +K+  V E                  TD VK E           
Sbjct: 534 NLINNAVKFTDSGHIYLKVNKVFED-----------------TDKVKLE----------- 565

Query: 551 QNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610
              F  +  G G +D                             D  D    I   A  T
Sbjct: 566 ---FSIEDTGIGIED-----------------------------DFKDKIFKIFTQAETT 593

Query: 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPI 670
             +KY           GGTGLGLAI ++LV +M G +   S++  GSTF F   + ++  
Sbjct: 594 YTKKY-----------GGTGLGLAISRELVRMMNGDIWFESEIGKGSTFYFTAEFSLNKR 642

Query: 671 EENS 674
            EN+
Sbjct: 643 YENN 646



 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 26/160 (16%)

Query: 845  SSSSAEVPETKP-KPKPK-ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
            + +S E  E K  +PK K IL+VEDN+IN  +A   + QLG+     +NG EA+  V+ +
Sbjct: 649  NKNSKEFQEKKIIEPKEKTILVVEDNEINREIALGFLNQLGYKYISCSNGKEAISVVEDR 708

Query: 903  N--YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
            N   D+ILMD+ MP+++G +AT  IR  E                     + NH    PI
Sbjct: 709  NNHIDIILMDIQMPILNGFEATDTIRKAEKL-------------------TENH---TPI 746

Query: 961  IAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            I MTA A++   E+    GMD ++SKP +   L+  L++Y
Sbjct: 747  IGMTAYAMAGDREKAIECGMDDYISKPFSIDTLRIVLKRY 786


>gi|374293286|ref|YP_005040321.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
 gi|357425225|emb|CBS88109.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
          Length = 1238

 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/172 (44%), Positives = 106/172 (61%), Gaps = 3/172 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I  +K  E  L       E   R+K + LATMSHEIR+P+ GV+ M E+++ T LD EQ
Sbjct: 541 DITARKQAEEALRAAKEQAEIAARSKAEFLATMSHEIRTPMNGVLGMLELMALTPLDEEQ 600

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
           R L+  M  SG  +L++I+DILDLSK+E+G ++LE    RP E+V+ V    A  + QK 
Sbjct: 601 RTLVSTMRDSGAALLRIIDDILDLSKIEAGKLELEDLDLRPAELVEGVADLLAPQAHQKG 660

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
           L L  DI   VP  + GD  R+RQIL NL  NAIKFT  G+V ++++   EP
Sbjct: 661 LALICDIHRSVPARLRGDSGRLRQILFNLTGNAIKFTDRGRVVLRVHAA-EP 711



 Score = 83.2 bits (204), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 22/155 (14%)

Query: 847  SSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDL 906
             + E  +  P     +L+ ED+  N  V    +++LG ++++  +G +A+ A +   + L
Sbjct: 952  GAGEGQQGGPPAYGPVLVAEDHPTNQQVVLRQLRRLGCTVELAADGEQALSAWRIGRHRL 1011

Query: 907  ILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966
            ++ D  MPVMDG +  R IR          A E GI    P++          I+AMTAN
Sbjct: 1012 VITDCHMPVMDGYELARRIR----------AEEGGIGH--PTA----------IVAMTAN 1049

Query: 967  ALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            ALS   E C A GMD +++KPVT  +L + L +  
Sbjct: 1050 ALSGEMERCLAAGMDDYLAKPVTLAQLSQVLARRL 1084



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 7/115 (6%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V +   V DTGIGI       LF+ + Q  +   R++GGTGLGLAIC +L+E MGGR+ V
Sbjct: 717 VRLHVAVEDTGIGIGPEGQARLFQPFSQADSSTTRRFGGTGLGLAICTRLIERMGGRIGV 776

Query: 650 TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSD-----MADQDSVTDDVTAGFFQ 699
            S    GSTF F +   ++  EE +             +AD+D V  DV A + +
Sbjct: 777 ESVPGRGSTFWFTV--DLARGEEPALPAPAPLAGLAVLVADEDEVQRDVLARYLE 829


>gi|309790216|ref|ZP_07684788.1| sensory box histidine kinase/response regulator [Oscillochloris
           trichoides DG-6]
 gi|308227801|gb|EFO81457.1| sensory box histidine kinase/response regulator [Oscillochloris
           trichoides DG6]
          Length = 906

 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/214 (38%), Positives = 120/214 (56%), Gaps = 22/214 (10%)

Query: 312 PVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK 371
           PVF   G   G  ++  DV+++VR   ++ + +E  A + A              TM   
Sbjct: 361 PVFEDDGYH-GHLWLYRDVSERVRGTAELVRAKE--AAEAA--------------TMAKS 403

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
             LATMSHEIR+P+  V+ M  ++ +T L REQRQ    + +SGD++L LIN+ILD SK+
Sbjct: 404 SFLATMSHEIRTPMNAVIGMTTLMLDTDLTREQRQYAETIRTSGDMLLALINNILDFSKI 463

Query: 432 ESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQI 488
           ESG M+LE   F     ++ V   L   AA  +K ++L G ++  VP  + GD  R+RQI
Sbjct: 464 ESGHMELEQQPFSLHACIEEVNELLGPKAA--EKGIVLTGMVSGQVPAMISGDSTRVRQI 521

Query: 489 LTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGL 522
           L NLISNAIKFT  G+V ++    P+   + E L
Sbjct: 522 LVNLISNAIKFTNVGEVTVRASARPDEALSGEHL 555



 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 90/159 (56%), Gaps = 28/159 (17%)

Query: 843 SPSSSSAEVPETKPKP--KP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
           SP++S+     TK     +P ++LL ED+++N  VA  M++++G+  D+ +NG E + A+
Sbjct: 638 SPTTSNTRAERTKLAKLGRPMRVLLAEDHQVNQQVALRMLEKIGYYADLASNGKEVIAAM 697

Query: 900 QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
             ++YD++LMDV MP MDGL ATR +R+                  +P +       R P
Sbjct: 698 HHRDYDVVLMDVQMPDMDGLDATRRLRAM-----------------LPEN-------RQP 733

Query: 960 -IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
            IIA+TANA++   E C A GMD ++SKP+    L+  L
Sbjct: 734 YIIAVTANAMTGDREVCLAAGMDDYISKPMLRADLEAAL 772



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 49/68 (72%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTGIGIPE+ +  LFR + Q+ A   R++GGTGLGLAI ++L ELMGG +TV S
Sbjct: 557 ITITVADTGIGIPEDRMDRLFRPFSQIDASTTRRFGGTGLGLAISRRLSELMGGSITVQS 616

Query: 652 KVHCGSTF 659
           KV  GS+F
Sbjct: 617 KVGVGSSF 624


>gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B]
 gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B]
          Length = 1947

 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 186/427 (43%), Gaps = 76/427 (17%)

Query: 588  ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
            A V +   V D+GIG+ +     LF+ + Q  +   RKYGGTGLGLAI KQLV +M G +
Sbjct: 1366 AEVRMHFSVRDSGIGMNKEQQSRLFQSFSQADSSTTRKYGGTGLGLAISKQLVAMMDGEI 1425

Query: 648  TVTSKVHCGSTFTFILPY--QVSPIEENSDDPDDLSDM----ADQDSVTDDVTAGFFQ-- 699
             V S+   GS F F   +  Q   I E +  PDDL  +     D +    ++ A   +  
Sbjct: 1426 WVESEPGVGSDFQFTACFEKQQGEIPEPTVAPDDLGPLPILVVDDNQSAREILAAILESL 1485

Query: 700  -FQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDA 758
             FQ +T      ++G  ++ ++    I  A A +        +  P            D 
Sbjct: 1486 GFQIKT------ASGGRQAVEM----IKAADADEPFKLVMLDWRMPG----------LDG 1525

Query: 759  CSVAEVAETLSEPESSFSHSPEPENETEVSRGKQ----CHVETTSWFQNPATESTSHSEA 814
                +    L + +++  + P+    T   R +       +  + +   PAT S+   E 
Sbjct: 1526 VQTGQ----LIQEDTTLKNQPKIIMITAFGREEMQEGAGGLAISGFLTKPATASSLLDEI 1581

Query: 815  NREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMV 874
             R M         +++ E     DR  Q+    +AE+         ++LLVEDN+IN  +
Sbjct: 1582 MRAM--------GREVAENPRGGDR-KQAVKEFAAELR------GAQVLLVEDNEINQEL 1626

Query: 875  AKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNW 934
            A  ++   G ++ V NNG EA+  +    +D +LMD  MPVMDG +ATR IR+   T   
Sbjct: 1627 AVEILTTHGMTVQVANNGQEALDLIAAHQFDGVLMDCQMPVMDGYEATRHIRNNPAT--- 1683

Query: 935  DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLK 994
                                 K +P++AMTANA+    E+    GM+  ++KP+    L 
Sbjct: 1684 ---------------------KDLPVLAMTANAMVGDKEKVIEAGMNDHIAKPINLADLF 1722

Query: 995  ECLEQYF 1001
            + + ++ 
Sbjct: 1723 KTMAKWI 1729



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 142/299 (47%), Gaps = 29/299 (9%)

Query: 210  VEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRF---IYNHFPSLHEEDILGKTDVE 266
            VE  ++ L  +      VL N+P  +  +D + RY     I+    SL    ++G T  E
Sbjct: 1078 VEARTEELSESRYLFQTVLDNSPAAISVKDLDSRYLLVNKIWRQVMSLTRSGVVGFTTRE 1137

Query: 267  IFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYM 326
            +      + S+     V+E G   + +   +      + FL Y  PVF   GE   V  +
Sbjct: 1138 LLPAELAERSEQEDSAVVESGDVIQGQARIKNAEGEVRVFLSYKFPVFDAKGECFAVGSV 1197

Query: 327  GMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPL 385
              DVT                        ELN  + I ++  +AK   LA MSHEIR+P+
Sbjct: 1198 LSDVT------------------------ELNHAMEIADDANQAKSDFLANMSHEIRTPM 1233

Query: 386  TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445
              ++ M+ +   T L  +QR  +  +  S + +L +INDILD SK+E+G + +EA  FR 
Sbjct: 1234 NAIIGMSHLALQTDLTSKQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEAVDFRL 1293

Query: 446  REVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
             +V+ +++       +   L L  D+  D+P  +IGD LR+ QIL NL +NA+KFT +G
Sbjct: 1294 DDVMDNLVSLVGLKAEDHGLELLLDVPPDLPTALIGDPLRLSQILINLGNNAVKFTEDG 1352


>gi|386828275|ref|ZP_10115382.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
 gi|386429159|gb|EIJ42987.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
          Length = 595

 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 106/170 (62%), Gaps = 4/170 (2%)

Query: 352 AKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGV 410
           A E EL     + EE  RAK + LA MSHEIR+PL  V+ MA IL +T L  EQ   L  
Sbjct: 47  AIENELLAAREVAEEATRAKSEFLANMSHEIRTPLNAVIGMAAILQDTPLSAEQLDYLST 106

Query: 411 MISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL-QTAAASLQKILMLEGD 469
           + +SG+ +L LINDILD SK+E+G ++LE      R  V++ L    + ++ K L L  +
Sbjct: 107 IRTSGETLLTLINDILDFSKIEAGRLELEYRSLDLRLCVENTLGLVTSVAVAKNLNLVYE 166

Query: 470 IADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE--PPF 517
           ++DDV   VIGDV RIRQIL N++SNA+KFT +G+V + +   P   PP+
Sbjct: 167 MSDDVHPVVIGDVTRIRQILLNMVSNAVKFTEKGEVKVIVDKTPPSFPPY 216



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 34/155 (21%)

Query: 854 TKPKPKPKI---------LLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
           TK  P P++         LL EDN  N  VA  M+K+LG  +D+ NNG+E +  ++ Q+Y
Sbjct: 459 TKTVPIPQVVQSFSHLRTLLAEDNITNQKVATLMLKKLGCEVDIANNGIEVLTYLKKQHY 518

Query: 905 DLILMDVCMPVMDGLKATR-LIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
           D++ MDV MP MDGL AT+ ++ +F +                         +R  IIAM
Sbjct: 519 DVVFMDVQMPEMDGLTATKHIVSTFSEA------------------------ERPWIIAM 554

Query: 964 TANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
           TANA+    E C A GM+ ++SKP+  + L+  L+
Sbjct: 555 TANAMQGDREMCIAVGMNDYISKPIRKETLEAVLQ 589



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           DE L     I   + D+GIGIPE+ L  LF+ + Q+ +   RK+GGTGLGL I K L  L
Sbjct: 228 DESLSPPETIHFAIKDSGIGIPESRLHRLFQPFTQIDSSTTRKHGGTGLGLTISKSLSLL 287

Query: 643 MGGRLTVTSKVHCGSTFTFILPYQVSPIEEN 673
           MGG + V S+ + GSTF F L  QV P  EN
Sbjct: 288 MGGNVWVESQENVGSTFHFTL--QVQPAREN 316


>gi|22023765|gb|AAM89215.1|AF462151_1 hybrid histidine kinase [Tritrichomonas foetus]
          Length = 1547

 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 155/322 (48%), Gaps = 63/322 (19%)

Query: 361  IHITE----------ETMRAK-------QMLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
            IHITE          ET RA+         LA MSHEIR+P+ G+  M +IL+  +L  E
Sbjct: 995  IHITELRSALLQLETETRRAEIANSQKTVFLANMSHEIRTPMNGIFGMLDILATKELTTE 1054

Query: 404  QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV-LQTAAASLQK 462
            QR L+  + +S   ++ L++D L L+K+E G ++   + F   + V+ + + TA  + Q 
Sbjct: 1055 QRLLVDSIRASTFQLMNLLDDTLKLTKIEQGDIESSPSIFSLTKAVEPIFIATALRASQS 1114

Query: 463  ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGL 522
             L     I+  +P  + G++    QI+ NL+SNA+KFT +G + I L             
Sbjct: 1115 KLKFNVSISQKIPKLMFGELQLTLQIINNLVSNALKFTKQGSISINL------------- 1161

Query: 523  KQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSM 582
                  +Q         KHQ  SQT   +N              + ++D G       S 
Sbjct: 1162 -----DWQRI-------KHQNASQTNHSKN-----------VSSRIENDSG-------SY 1191

Query: 583  DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
            D+D+E    I  +V DTGIGI       +F ++ Q +   AR +GG+GLGLA+ + +V  
Sbjct: 1192 DDDVEEICII--EVIDTGIGISPEQQRFIFDRFKQANQSVARFFGGSGLGLALVQDIVHF 1249

Query: 643  MGGRLTVTSKVHCGSTFTFILP 664
            M G++ + S V  G+ FT  +P
Sbjct: 1250 MQGQIEIDSDVGHGTRFTCKIP 1271



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 23/140 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KIL+VEDNK N  V K +++ +G  + +  NG EA+ A++ + +DLI MD  MPV+DG++
Sbjct: 1427 KILVVEDNKTNQFVMKKILQNIGCPMRIAENGKEAIDALEQEEFDLIFMDCQMPVLDGIE 1486

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT++IRS                          ++  IPIIA+TA+A+    E C   GM
Sbjct: 1487 ATKIIRS-----------------------CDKNYSSIPIIALTASAVEGDEETCRKAGM 1523

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D+++SKPV  Q++K  + Q+
Sbjct: 1524 DAYLSKPVRIQQIKNIIAQF 1543


>gi|403366084|gb|EJY82833.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           containing protein [Oxytricha trifallax]
          Length = 911

 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 154/299 (51%), Gaps = 18/299 (6%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
           M+A+ SH++R+PL  +++M +++    ++ + +Q L +  +S DL+  L+ND LD  ++ 
Sbjct: 263 MVASTSHDMRTPLNTIINMHQLIEMKTMEPQLKQYLSIAKNSTDLLKYLVNDTLDYFQIR 322

Query: 433 SGVMKLEAAKFRPREVVKHV-----LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
           SG  K++  + R +++++              LQ+I+ L+ DI +++    I D  RI Q
Sbjct: 323 SGKFKIQKTQVRLKDILEKCSDLISFPMKQKKLQQIVNLDEDIENEI---FIFDEQRITQ 379

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQT 547
           +L NL+SNA+KFT +G + + +  + + P  K   K K++   +    V       ++  
Sbjct: 380 VLVNLLSNALKFTLKGFIKLSVQKIKKYPVKKLVRKHKNQITLNQLAGV-------QASN 432

Query: 548 ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
            S+ NG      G  Y + +   +      + + ++E     + +R +V DTGIGI E+ 
Sbjct: 433 VSNNNG---GVMGSRYCNQREHIEVINSSEYLSQIEEQYVQLMQLRFEVEDTGIGIKEDD 489

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
           +  LF+ + ++  +      G G+GL IC +++   G  L V S    G++F FI+  Q
Sbjct: 490 MGRLFKMFGKIPNNDQLNPNGIGMGLTICNKILCQHGSELQVQSTYGKGTSFYFIIDMQ 548



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 94/188 (50%), Gaps = 43/188 (22%)

Query: 827 PQKICEMQEKPDR---ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMK-QL 882
           PQ+   ++EKP +   ISQ+  + S +          ++L+V+DN  NV   +++++ + 
Sbjct: 747 PQQRKSVKEKPSQELQISQNIINCSCK----------RVLVVDDNTFNVFTLQTILEVEF 796

Query: 883 GHSIDVVNNGVEAVHAVQ-------CQ----NYDLILMDVCMPVMDGLKATRLIRSFEDT 931
               D+  NG +AV  VQ       CQ     Y LI MD+ MPVM+G +++ +IR     
Sbjct: 797 KLPCDIAYNGQQAVEEVQNKLNTQKCQICNRQYILIFMDIQMPVMNGYESSEIIRQ---- 852

Query: 932 GNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
                     +E+ + S      F    I+ +TA+   +  ++CF +GM+ F++KPV  +
Sbjct: 853 ----------LERDLLSQNEKLSF----IVGLTAHTTEQYQQKCFVSGMNEFMTKPVDQK 898

Query: 992 KLKECLEQ 999
            LK  L++
Sbjct: 899 NLKVLLKK 906


>gi|398379080|ref|ZP_10537225.1| PAS domain S-box [Rhizobium sp. AP16]
 gi|397723547|gb|EJK84041.1| PAS domain S-box [Rhizobium sp. AP16]
          Length = 1086

 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 103/163 (63%), Gaps = 6/163 (3%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL   +  +E   RAK + LA MSHEIR+P+ GV+ MAE+L+ T LD  Q+  + 
Sbjct: 523 KKREAELQLLLARSEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDLDARQKTFID 582

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILML 466
           +++ SG+ +L +INDILD SK+++G M+L  A F P E V+ V   L + AA     L++
Sbjct: 583 IIVKSGNALLTIINDILDFSKIDAGQMRLRKAAFDPAEAVEDVATLLSSPAAEKDIELLV 642

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
                 +VP  V+GD  R RQI+TNL+ NAIKFT  G V +++
Sbjct: 643 RA--TPEVPAMVLGDAGRFRQIVTNLLGNAIKFTERGHVLVEV 683



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 20/148 (13%)

Query: 854  TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCM 913
             +P     +L+ EDN++N +V   +++  G    VV NG EAV A       LI+MDV M
Sbjct: 947  ARPVSAIDVLVAEDNEVNQIVFTQILQVTGLRFLVVQNGQEAVDAWLKLRPSLIMMDVSM 1006

Query: 914  PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE 973
            PVM+G +ATR IR  E        AEAG+           H   +PI+ +TA+AL    +
Sbjct: 1007 PVMNGHQATRTIRQLE--------AEAGL---------GCH---VPIVGVTAHALDVDRD 1046

Query: 974  ECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             C   GMD ++SKP++ + L+  + ++ 
Sbjct: 1047 MCLEAGMDDYMSKPISPELLEAKVRRWL 1074


>gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 765

 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 111/176 (63%), Gaps = 7/176 (3%)

Query: 335 RKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAE 393
           R+  ++A +RE     K ++ E  + +   E   RAK Q +ATMSHEIR+P+ GV+ M E
Sbjct: 222 RRTVELALMRE-----KEEKIETRRLVQEAEAANRAKSQFIATMSHEIRTPMNGVIGMVE 276

Query: 394 ILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL 453
           +L +T LD  QR  LG++  SGD ++ +INDILD SK+E+G M LE  +F   E+++  +
Sbjct: 277 MLRDTTLDDSQRHYLGIIERSGDSLMNIINDILDYSKIEAGKMSLEHMQFDLEELLEDCV 336

Query: 454 QTAAASLQKI-LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
           Q  +AS  K  + L   I+ + P +++GD  R++Q+L NLI NA KFT EG + ++
Sbjct: 337 QMFSASTDKRNIELICSISPNTPKQLMGDPTRLKQVLVNLIGNAFKFTSEGHIYVE 392



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 23/138 (16%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV--QCQNYDLILMDVCMPVMDGL 919
           +L+ EDN +N MV + ++ +   +     +G++A++AV      YDLI+MD  MP MDG 
Sbjct: 638 VLVAEDNPVNRMVIEGLLAKFDIAPKFAEDGLQALNAVTESPTPYDLIIMDCEMPEMDGF 697

Query: 920 KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
           +ATR IR++E   N  A                       IIA+TA+  +E  +  F +G
Sbjct: 698 EATRSIRTWESNNNQPATT---------------------IIALTAHVEAEHRQRVFDSG 736

Query: 980 MDSFVSKPVTFQKLKECL 997
           M+ ++SKPVT +KL E L
Sbjct: 737 MNYYLSKPVTMEKLSEAL 754



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
           N+ D DL     I   V D+GIGI  N    LF  + Q      RK+GGTGLGL ICKQL
Sbjct: 397 NASDADLP---MIHFSVEDSGIGIESNQQEKLFDAFCQADGSTTRKFGGTGLGLTICKQL 453

Query: 640 VELMGGRLTVTSKVHCGSTFTF 661
            E+MGG + V S+   GSTF F
Sbjct: 454 AEMMGGEIGVYSREKAGSTFWF 475


>gi|407929232|gb|EKG22067.1| PAS domain-containing protein [Macrophomina phaseolina MS6]
          Length = 1495

 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 123/197 (62%), Gaps = 11/197 (5%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
           GV  + MD+T+       + K +EE+  ++ + ++L       +E  R K Q LA MSHE
Sbjct: 748 GVIGVSMDITE-------LHKRKEELTAREKENSKLVANAVAAKEASRMKSQFLANMSHE 800

Query: 381 IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
           IR+P+ GV+ M+E+L +TKLD+EQR     +  S + +L +INDILDLSKVESG + +E 
Sbjct: 801 IRTPIAGVIGMSELLLDTKLDQEQRDCAENIQRSANGLLTVINDILDLSKVESGRLDVEE 860

Query: 441 AKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDV--PIEVIGDVLRIRQILTNLISNAI 497
            +F    V++ V +  A A+++K +  E  I  ++   ++V+GD  R+RQILTNL++N+I
Sbjct: 861 VQFSLSVVLRDVNKMMAFAAVRKNISYESHIQPEIERDLKVMGDPGRLRQILTNLLTNSI 920

Query: 498 KFTPEGKVGIKLYVVPE 514
           KFT EG V + + +  E
Sbjct: 921 KFTSEGHVSLSVSITSE 937



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 30/148 (20%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV------QCQNYDLILMDVCMPV 915
            +L+VEDN++N  +A   +K+ G S++ V NG EAV  +      +    D+ILMDV MP+
Sbjct: 1108 VLVVEDNQVNQQIALKTIKKQGFSVNAVWNGKEAVEYLMEAKEGKRDKPDIILMDVQMPI 1167

Query: 916  MDGLKATRLIRS---FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            MDG KAT+ IR+   F D                     S H + IPI+AMTA+A+    
Sbjct: 1168 MDGYKATQTIRTEAPFRD---------------------SPHIRNIPIVAMTASAIQGDK 1206

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQY 1000
            E+C   GMD +++KPV  + L++ L ++
Sbjct: 1207 EKCQEAGMDDYLAKPVRGKLLEKMLVKW 1234



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 576  VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
            VS   S+  + +  V +R  V DTGIGI E     LF+ + Q  +  AR++GGTGLGLAI
Sbjct: 928  VSLSVSITSENDEIVNVRFAVEDTGIGIEEEVRQRLFKPFSQADSSTARRFGGTGLGLAI 987

Query: 636  CKQLVELMGGRLTVTSKVHCGSTFTFILPY-------QVSPIEENSDDPDDL-SDMADQD 687
             K LVELM G + + S +  G+  +F +P+       + SP+ + +  PD L SD++   
Sbjct: 988  SKNLVELMHGGIELDSTLGQGTKASFWIPFNKAQYQDEGSPLIDIASIPDRLQSDISVSC 1047

Query: 688  SVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASA 730
              +DD             G     +G +RS   LP +  F  A
Sbjct: 1048 GSSDDYGTPPLTPIAANNGKSPLRHGRARSVVSLPGNGNFHHA 1090


>gi|345862573|ref|ZP_08814793.1| sensory box protein [Desulfosporosinus sp. OT]
 gi|344324433|gb|EGW35991.1| sensory box protein [Desulfosporosinus sp. OT]
          Length = 908

 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 129/227 (56%), Gaps = 21/227 (9%)

Query: 302 GSKTFL-IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKA-------- 352
           G K  L ++  PV   SG+ +       D+T + +  +++  L  ++    A        
Sbjct: 448 GKKVLLEVFGTPVKDTSGQIVASLMSFADITHRQQAEDEIKSLNNQLVKTNAILEETNAI 507

Query: 353 KETELNKTIHITEETMRAK-----------QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
            E E+ +   +  E ++AK             LA MSHEIR+P+TGV+ + ++L  ++LD
Sbjct: 508 LEEEIQEHCEVEAELVKAKVDAENANIAKSNFLAHMSHEIRTPMTGVMGILQLLQMSQLD 567

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV-LQTAAASL 460
            EQ   + V I+S +L+L++INDILD SK+E G +KLE   F+  E++ ++ +  + A+L
Sbjct: 568 EEQFHFIKVCITSSELLLKVINDILDYSKIEDGKLKLEKVPFKLTELISNLEMLFSPAAL 627

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
            K + LE  I  +VP  +IGD  ++RQ+L+NLI NA+KFT EG++ +
Sbjct: 628 NKSIELEMHIEGNVPENLIGDSFKLRQVLSNLIGNALKFTHEGRIDL 674



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 89/189 (47%), Gaps = 27/189 (14%)

Query: 815  NREMIQTSKTNEPQKI---CEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKIN 871
            N E+   SK NE       C + EKP+     P +    +     K   K+L+VED++I 
Sbjct: 741  NGEIWVESKVNEGCTFYFTCVL-EKPEVEKDGPKNDGHNLGNCSQKS-LKLLIVEDDEII 798

Query: 872  VMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDT 931
             MV +    + G  + +  +G  AV A Q Q +D+I+MD  MPV+DG K T  IR  E+ 
Sbjct: 799  RMVIEKFSIRKGWKVVLAEDGKAAVDAYQKQEFDVIIMDCQMPVLDGYKTTAAIRQLEN- 857

Query: 932  GNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
                   + G              K  PIIAMTANAL    E C   GMD +++KPV   
Sbjct: 858  -------KVG--------------KHTPIIAMTANALKGVRETCLNAGMDDYLTKPVETS 896

Query: 992  KLKECLEQY 1000
               + +E++
Sbjct: 897  AFYDMVEKW 905



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 48/83 (57%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI  + +  LF+ + Q  +   R YGGTGLGLAICK L E M G + V SKV+ 
Sbjct: 693 VRDTGIGITRDKISELFKSFSQADSSTTRNYGGTGLGLAICKGLTEKMNGEIWVESKVNE 752

Query: 656 GSTFTFILPYQVSPIEENSDDPD 678
           G TF F    +   +E++    D
Sbjct: 753 GCTFYFTCVLEKPEVEKDGPKND 775


>gi|334117721|ref|ZP_08491812.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
 gi|333460830|gb|EGK89438.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
          Length = 959

 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 156/294 (53%), Gaps = 31/294 (10%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTK-LDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            LA MSHE+RSPL  ++  +++++ ++ L  E ++ + ++ SSG+ +L LIN++LDLSK+
Sbjct: 447 FLANMSHELRSPLNAIMGFSQLMTRSQTLCPEHQENISIISSSGEHLLTLINNVLDLSKI 506

Query: 432 ESGVMKLEAAKF---RPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQI 488
           ESG   L   KF   R    ++ + +  A   Q  L L  D + +VP  V  D +++RQI
Sbjct: 507 ESGRTTLNLKKFDLYRLLNDLEDMFELKADDKQ--LQLVFDRSPEVPQYVEADEVKLRQI 564

Query: 489 LTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQ-T 547
           L NL++N++KFT EG V +++        +K+ L    +  Q+  +     +  P ++ +
Sbjct: 565 LINLLNNSLKFTHEGGVTVRV--------SKQSL---GRIQQAEGENFAHSEVSPNTEFS 613

Query: 548 ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607
           AS+        H +       +DD  +             ++ ++  +V DTG GI  N 
Sbjct: 614 ASNGLKISQLSHSKNQVIATQNDDSAST------------SSFFLHFEVEDTGCGIATNE 661

Query: 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           L  LF  ++Q       +  GTGLGL I ++ VELMGG+++V+S V  G+ F F
Sbjct: 662 LDALFEPFVQTKTGKDSQ-EGTGLGLPISRKFVELMGGQMSVSSAVGKGTNFKF 714



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 24/146 (16%)

Query: 842 QSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
           +SP  S   +     +   +IL+V+D  +N  +   ++  LG  +    NG EA+     
Sbjct: 727 ESPKPSRNIIALVPNQHTYRILIVDDKLLNRQLLIKLLYPLGFELKEATNGQEAIEIWDS 786

Query: 902 QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII 961
               LI MD+ MPVMDG +AT+ I+     G     A A                   II
Sbjct: 787 WEPHLIWMDMRMPVMDGYEATQYIK-----GTIKGQATA-------------------II 822

Query: 962 AMTANALSESAEECFANGMDSFVSKP 987
           A+TA+ L E      + G D+F+ KP
Sbjct: 823 ALTASVLEEERAVILSAGCDAFMRKP 848


>gi|443474977|ref|ZP_21064941.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
 gi|443020234|gb|ELS34217.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
          Length = 831

 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/271 (32%), Positives = 148/271 (54%), Gaps = 30/271 (11%)

Query: 301 FGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKT 360
           +  + F  Y  PV+S+  +  G+ +   D+T   +K+  + +L+    ++KAKE      
Sbjct: 253 YRDRVFDYYTSPVYSEQNKFCGLIWCFRDIT--AKKQADLLQLQLMEDLRKAKEE----- 305

Query: 361 IHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVL 419
               E  ++ K   LA MSHEIR+P+ GV+ M ++L+ TKL+ EQ + +  +  SG+++L
Sbjct: 306 ---AEAAVQTKAAFLAMMSHEIRTPINGVIGMTQLLAGTKLNAEQDKFVRTIQVSGEMLL 362

Query: 420 QLINDILDLSKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIE 477
            ++NDILD SK+ESG ++LE      R +V+ +  +Q + A  +K L  E ++   VP  
Sbjct: 363 SVVNDILDFSKIESGKLELENRALDVRALVRDIYDVQLSKAK-EKALKFEFNVQSQVPPF 421

Query: 478 VIGDVLRIRQILTNLISNAIKFTPEGKV--GIKLYVVPEPPFAKEGLKQKSKAYQ---SA 532
           ++GDV R+RQIL NL+SNA+KFT  G V  G++L        A E +    + +Q   S 
Sbjct: 422 IMGDVTRLRQILLNLVSNALKFTETGGVSMGVRL--------AAEEIPTADRPFQLLFSV 473

Query: 533 TD---AVKEEKHQPKSQTASDQNGFHDKKHG 560
           TD    + +++ Q   Q  S       +K+G
Sbjct: 474 TDTGIGITDDQMQRLFQPFSQATAATSRKYG 504



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 90/164 (54%), Gaps = 20/164 (12%)

Query: 838  DRISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
            D ++++PS ++  +        P KIL+ EDN IN  +A +M+ ++G+  DVV+NG+  +
Sbjct: 555  DAVNKAPSGNNTNLGSRLGDRVPLKILIAEDNLINQELAMAMLIKMGYQPDVVDNGLAVL 614

Query: 897  HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
             AVQ  +YDL+L+DV MP MDGL+    +       +W    E  I            ++
Sbjct: 615  EAVQVSHYDLLLLDVQMPEMDGLETAAYL-----VNHWH---ELHIS-----------YE 655

Query: 957  RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            R  IIAMTA+A+    E C   GMD ++SKP+    L+  +E++
Sbjct: 656  RPTIIAMTASAMQGDREMCLRAGMDDYISKPIMMDSLQRTIEKW 699



 Score = 82.8 bits (203), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 51/73 (69%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI ++ +  LF+ + Q +A  +RKYGGTGLGL ICK LVE MGG + V SK   
Sbjct: 473 VTDTGIGITDDQMQRLFQPFSQATAATSRKYGGTGLGLVICKNLVENMGGEIQVESKNDR 532

Query: 656 GSTFTFILPYQVS 668
           GSTF+F +  Q++
Sbjct: 533 GSTFSFTMTTQIA 545


>gi|390951980|ref|YP_006415739.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
 gi|390428549|gb|AFL75614.1| PAS domain S-box [Thiocystis violascens DSM 198]
          Length = 1058

 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 188/434 (43%), Gaps = 99/434 (22%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIG+    +  LF  + Q  +   RKYGGTGLGL+I K+L  LMGG + + S    
Sbjct: 673  VTDTGIGMTREQVKRLFTPFEQADSSTTRKYGGTGLGLSISKRLAALMGGEIRIESTPGS 732

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFF--QFQPRTLG-SLFSSN 712
            GS     LPY+                 A  DS   D   G F  + QPR +G  + ++ 
Sbjct: 733  GSCCALWLPYRAC--------------AAPADSTPSD---GPFAPRAQPRLVGLRILAAE 775

Query: 713  GTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPE 772
              + ++++L   +    A         + +   + RQ                ET++   
Sbjct: 776  DNTVNQQVLQEMLSLEGA---------ALTLVGDGRQ--------------AVETIARQR 812

Query: 773  SSFS------HSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEAN-RE------MI 819
             +F         PE +   E +R  Q        F  P    T+H+ A  RE      M+
Sbjct: 813  DAFDLVLMDVQMPEMDG-LEATRRIQAMA-----FDLPVIGQTAHALAEEREKCRLAGMV 866

Query: 820  QT-SKTNEPQKICEM---------QEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNK 869
             T +K  + +++  M         + +P+R   + S  S E+   +     +ILLVED+ 
Sbjct: 867  DTLTKPLDHEQLVTMILRHGVPRDRGQPER--AAASEESLELALRQAHQGRRILLVEDDA 924

Query: 870  INVMVAKSMMKQ-LGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSF 928
            IN  +A  +++   G ++DV  +G  AV   +   YDLILMD+ MPVM+G  A R IR  
Sbjct: 925  INQEIALILLRDGPGLAVDVAEDGRLAVGMARAGAYDLILMDMRMPVMEGPDAARAIRQ- 983

Query: 929  EDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
                             +P       ++R+PIIAMTA+ L+E  + C  +GM+ +++KPV
Sbjct: 984  -----------------LPG------YRRVPIIAMTASDLAEDIQHCLDSGMNDYLAKPV 1020

Query: 989  TFQKLKECLEQYFP 1002
                L   L  + P
Sbjct: 1021 DPSVLYRALLTWLP 1034



 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 116/205 (56%), Gaps = 11/205 (5%)

Query: 312 PVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKET--------ELNKTIHI 363
           P+ S+ GE +G      D+T+Q R  +++++ +  +    ++ T        EL K I +
Sbjct: 454 PILSRHGELLGYRGSDRDMTEQTRLADELSRYQHRLEDMVSRRTAELETVNLELAKAIQV 513

Query: 364 TEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQ-LLGVMISSGDLVLQL 421
            E   RAK + LA MSHEIR+PL GV+ +A+I     + + + Q     ++ SG L+L +
Sbjct: 514 AETANRAKSEFLANMSHEIRTPLNGVLGLAQIGQRESVGQGKSQDYFARILDSGKLLLGI 573

Query: 422 INDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIG 480
           +NDILD SK+E+G + +E+  F PR VV   L   A  +  K L+L   I  ++P   +G
Sbjct: 574 LNDILDFSKIEAGKLVVESMPFVPRRVVDSALGVIAERAAAKGLVLTARIDANLPDACLG 633

Query: 481 DVLRIRQILTNLISNAIKFTPEGKV 505
           D  R+ QIL N +SNA+KFT  G++
Sbjct: 634 DPTRLTQILLNFLSNAVKFTDRGRI 658


>gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
 gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
          Length = 1710

 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 154/296 (52%), Gaps = 17/296 (5%)

Query: 224  LHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREV 283
             +  L N+P+    QD ELRY ++YN  P    E+I+G  + E+ S    +     K+ V
Sbjct: 1111 FNLALSNSPITFTTQDCELRYTWVYNPAPGFTFEEIVGNLETELLSADEAERILAIKQPV 1170

Query: 284  LEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKL 343
            +E G+   +E  F       + + + VEP+       IG+  + +D+T++     K A+L
Sbjct: 1171 IETGIRNCQEY-FIARDGQMRYYELSVEPLRDSDNNIIGIATVVIDITER-----KQAEL 1224

Query: 344  REEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAE-ILSNTKLDR 402
              + A +  +E E  ++ ++ +      + LA MSHE+R+PL  ++   + +L   +   
Sbjct: 1225 ERQRARELQREKEAAESANLAK-----SRFLANMSHELRTPLNAILGFTQLLLRQPQFSG 1279

Query: 403  EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK---HVLQTAAAS 459
            E  + L ++  SG  +L LINDIL LSKVE+G + L+   F    ++K   ++    AA+
Sbjct: 1280 EPSEYLNIIHRSGKHLLGLINDILTLSKVEAGRIYLKTKPFDLSLLLKTLENMFSLKAAN 1339

Query: 460  LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
              K L LE     +VP  +IGD  ++ Q+L NL+SNAIKFT  G+V + +   P P
Sbjct: 1340 --KRLQLEIKADANVPRGLIGDEDKLHQVLINLLSNAIKFTSFGEVCLTVRSQPVP 1393



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)

Query: 589  TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            + +++ +V DTG GI  + L  +F  ++Q  A    K   TGLGLAI ++ VELMGG++T
Sbjct: 1400 SCYLQFEVRDTGAGINFDELEKIFEPFIQTEAGEKVK-QSTGLGLAISREFVELMGGKIT 1458

Query: 649  VTSKVHCGSTFTFILP 664
            V S++  GS F F +P
Sbjct: 1459 VESQLKHGSVFQFTIP 1474



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 24/148 (16%)

Query: 854  TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCM 913
            ++ +P+ +IL+ ED   N  +   +++ +G  +    NG EA+   +  +  LI MD+ M
Sbjct: 1496 SRDQPQYRILVAEDRPDNRHLIVKLLETVGFEVQAAVNGQEAIELWESWSPHLIWMDMQM 1555

Query: 914  PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE 973
            PVM+G +A + I+                  A P    +       IIA+TA+   E   
Sbjct: 1556 PVMNGYQAIQYIK------------------ATPKGEDT------VIIALTASVFEEERH 1591

Query: 974  ECFANGMDSFVSKPVTFQKLKECLEQYF 1001
               A G + FV KP   Q++   ++QY 
Sbjct: 1592 NIIALGCNDFVRKPFEEQEIFAKIQQYL 1619


>gi|399036702|ref|ZP_10733666.1| signal transduction histidine kinase [Rhizobium sp. CF122]
 gi|398065529|gb|EJL57150.1| signal transduction histidine kinase [Rhizobium sp. CF122]
          Length = 946

 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 116/195 (59%), Gaps = 6/195 (3%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
           G  ++ +D T  + +R+    L  ++   K +E EL + +   E   R K + LA MSHE
Sbjct: 362 GERWVNLDAT--ISERQHWIALFTDVTEAKEREAELERLLSRAEAADRVKSEFLANMSHE 419

Query: 381 IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
           IR+P+ GV+ MAE+L+ T LD  Q+  + +++ SG+ ++ +INDILD SK+++G M L  
Sbjct: 420 IRTPMNGVLGMAELLAKTDLDTRQKTFIDIIVKSGNALVTIINDILDFSKIDAGQMTLRR 479

Query: 441 AKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
             F   + ++ V  L +++A+ + I +L    A D+P  VIGD  R RQI+TNLI NA+K
Sbjct: 480 TTFDLVDAIEDVATLLSSSAAEKNIDLLV-RTAPDLPSAVIGDAGRFRQIITNLIGNAVK 538

Query: 499 FTPEGKVGIKLYVVP 513
           FT  G V + +   P
Sbjct: 539 FTERGHVLVDVGFTP 553



 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 25/186 (13%)

Query: 817  EMIQTSKTNEPQKICEMQEKPDRISQSPSS-SSAEVPETKPKPKPKILLVEDNKINVMVA 875
            ++++TS+T   Q    +   P+    +PS     E  E  P     +L+ EDN++N +V 
Sbjct: 773  DVVRTSRTK--QIATAVNILPNVQETAPSLLPKVESSERMPAGFIDVLVAEDNEVNQIVF 830

Query: 876  KSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
            K ++++ G S  VV+NG EAV A       +I+MDV MPVM+G  ATR IR  E      
Sbjct: 831  KQILQETGVSFLVVSNGQEAVEAWDRYTPRIIMMDVSMPVMNGHDATRAIRDRE------ 884

Query: 936  AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKE 995
                                 R+PII +TA+AL    + C   GMD ++SKP++ + L+E
Sbjct: 885  ----------------RGQGHRVPIIGVTAHALDVDRDLCLEAGMDDYMSKPISPELLEE 928

Query: 996  CLEQYF 1001
             L  + 
Sbjct: 929  KLGLWL 934



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 47/73 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP + L ++F K+ Q+     R++ GTGLGLAI   LV+L GG L V S+   
Sbjct: 565 VEDTGIGIPGDKLESIFDKFSQIDTSSTRRHEGTGLGLAITTGLVDLFGGYLEVDSQPGE 624

Query: 656 GSTFTFILPYQVS 668
           GS FT  LP+ V+
Sbjct: 625 GSVFTVNLPFVVA 637



 Score = 45.1 bits (105), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 65/153 (42%), Gaps = 35/153 (22%)

Query: 856 PKPKP------KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-----Y 904
           PKP P      ++L+V+DN +N  +    +   G       +G+EAV  ++  +      
Sbjct: 643 PKPLPVNVRGARVLIVDDNAVNRQILTEQLAVWGFDGAAAGDGLEAVAILEAADELGIGI 702

Query: 905 DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
           D +++D  MP M+G +  R +R                        +   F+R+PII +T
Sbjct: 703 DAVVLDYQMPGMNGAEIARKLR------------------------ADCRFERLPIIFLT 738

Query: 965 ANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
           +  +S + ++  A    +++ KP     L+  +
Sbjct: 739 SMDISGTEKDFAALNGQAYLMKPARANVLRNTI 771


>gi|336463454|gb|EGO51694.1| hypothetical protein NEUTE1DRAFT_89323 [Neurospora tetrasperma FGSC
           2508]
          Length = 1319

 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 181/392 (46%), Gaps = 84/392 (21%)

Query: 284 LEKGLPAKREITFETELFGSKTFLIYVEPVFSK---SGETI-----GVNYMGMDVTDQVR 335
           LE  L  K  +  +   F  + +    +P+  +   +G +      GV    MDVT +++
Sbjct: 641 LESILGGKSPVELQDHKFAGRWYRTGFQPILRRDPLTGNSTEDFIEGVMGFIMDVT-ELK 699

Query: 336 KREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEI 394
            RE+      +I  Q  ++ +L       +E  R K Q LA MSHEIR+P+TGV+ MAE+
Sbjct: 700 DRER------DIEAQALEKRQLLANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMAEL 753

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
           L + +LD EQR+L   +  S + +L +INDILD S       K+E+ +    EV     Q
Sbjct: 754 LLDVELDAEQRELTENIFRSANALLTVINDILDFS-------KIESGRLDIEEV-----Q 801

Query: 455 TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
            + A               V I+ +G +L       +L   A  +     +GI L V+ +
Sbjct: 802 FSLA---------------VVIQEVGKMLSFTAERKSL---AFNYEICSDIGIDLVVMGD 843

Query: 515 PPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGT 574
           P   ++ +         AT+++K                F  + H               
Sbjct: 844 PGRVRQIITNL------ATNSIK----------------FTHEGH--------------- 866

Query: 575 PVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLA 634
            V    S++++ + T+ ++  + DTGIGI E  L  LF+ + Q     ARK+GGTGLGL 
Sbjct: 867 -VKLHVSVEQETDDTIEVKFVIQDTGIGIEEEVLKRLFQPFSQGDPSTARKFGGTGLGLT 925

Query: 635 ICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
           I K L+ELM GR+ + SK   G+T TF +P++
Sbjct: 926 ISKNLLELMKGRMALASKKDEGTTATFWIPFK 957



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 26/145 (17%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV------QCQNYDLILMDVCMPV 915
            IL+VEDN+IN  +A   +++LG  +    NG EA+  +      + +  D+ILMDV MP+
Sbjct: 1028 ILVVEDNEINQQIAIRTIRKLGFQVAAAWNGKEALEYLSKASTGKKRKPDIILMDVQMPL 1087

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            +DG   T L+R                      +   ++ + +PI+AMTA+A+    E+C
Sbjct: 1088 IDGYLCTHLLRHH--------------------APYRSYVRDVPIVAMTASAIQGDREKC 1127

Query: 976  FANGMDSFVSKPVTFQKLKECLEQY 1000
               GMD ++SKPV    L+  L ++
Sbjct: 1128 KRAGMDDYLSKPVKRTTLERMLLRW 1152


>gi|373956327|ref|ZP_09616287.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
 gi|373892927|gb|EHQ28824.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
          Length = 1449

 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 172/351 (49%), Gaps = 44/351 (12%)

Query: 224  LHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFK 280
            L   ++NAP  +   D E+RY  + N +     L   D++G++  ++F    V   +   
Sbjct: 685  LSAFVKNAPAAVAMLDNEMRYIAVSNRWLEDYQLTGTDVIGRSHYDLFGSVSVNR-RSMH 743

Query: 281  REVLEKGLPAKREITFETELFGSKTFLIY-VEPVFSKSGETIGVNYMGMDVTDQVRKREK 339
            + VL   +  K E T          ++ + + P +   G+  G+     ++T  +++RE+
Sbjct: 744  QWVLAGNIERKEEDTLILPNINEVQYITWEMRPWYQYDGKIGGMMMFTQNITSMIKQREE 803

Query: 340  MAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTK 399
            +                 N  +H  +  +   + LA MSHEIR+PL GV+   +++  TK
Sbjct: 804  LK----------------NAKLHAEQANIAKSEFLANMSHEIRTPLNGVIGFTDLVLKTK 847

Query: 400  LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAK-------FRPREVVKHV 452
            L+  Q+Q L ++  S + +L +INDILD SK+E+G ++L+A +        +  +++ + 
Sbjct: 848  LNETQQQYLSIVNQSANALLSIINDILDFSKIEAGKLELDAERCDLYEMSCQATDIITYQ 907

Query: 453  LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            +QT    L+ +L    +I+ D+P  +  D +R++QIL NL+ NA KFT +G++ +K+ V+
Sbjct: 908  VQTKG--LEMLL----NISPDLPRFIYADTVRLKQILVNLLGNASKFTDQGEIELKIEVL 961

Query: 513  P---EPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHG 560
                +    + G++            +K EK     +  S ++G   KK+G
Sbjct: 962  STTGDNTSMRFGVRDTGI-------GIKPEKQAKIFEAFSQEDGSTTKKYG 1005



 Score =  110 bits (274), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 176/414 (42%), Gaps = 66/414 (15%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  V DTGIGI       +F  + Q      +KYGGTGLGL I  +L+ LMG +L + S
Sbjct: 970  MRFGVRDTGIGIKPEKQAKIFEAFSQEDGSTTKKYGGTGLGLTISNKLLGLMGSKLQLES 1029

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSS 711
                GS F F + ++    E  + D +++ D+     V DD                  +
Sbjct: 1030 VPGKGSLFYFDVTFKSEQGE--AIDWENI-DLIKNVLVVDDN----------------DN 1070

Query: 712  NGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEP 771
            N T  S+ LL  +I   +    NGF   +    +N  + +   ++      +  ET+ + 
Sbjct: 1071 NRTILSQMLLLKNI--QTTEAANGFG--ALQLLANGERYDVILMDYHMPFMDGMETVKKI 1126

Query: 772  ESSFSHSPE--PENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQK 829
              SF  + E  P      S      ++     Q            ++ +++ +K  +   
Sbjct: 1127 RESFYPTAEEQPIILLHSSSDDGLMIKLCDELQ-----------VSQRIVKPTKMQDIYN 1175

Query: 830  ICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVV 889
                  K D   +  S + AE   T+      +L+ EDN +N+++A++++K+   +  + 
Sbjct: 1176 ALSRLNKKDTELKDKSLNLAEAESTRFT----VLVAEDNTVNMLLARTIIKKFAPNAVIA 1231

Query: 890  N--NGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMP 947
               NGV+A+   +    DLILMDV MP M+G +ATR IR+ E  G+              
Sbjct: 1232 EALNGVQALKYCEQTLPDLILMDVQMPEMNGYEATRAIRALETRGH-------------- 1277

Query: 948  SSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                       PIIA+TA  +    E+C + GMD FV KP+  + L     ++ 
Sbjct: 1278 ----------TPIIALTAGNVKGEKEKCLSAGMDDFVVKPIVEESLIAIFNKWL 1321


>gi|337265957|ref|YP_004610012.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
 gi|336026267|gb|AEH85918.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
          Length = 1255

 Score =  126 bits (316), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 104/300 (34%), Positives = 154/300 (51%), Gaps = 40/300 (13%)

Query: 219 RADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVEIFSGAG-VK 274
           R +     ++ N PV +  +  +LR  ++   +     L +E+ +GKTDVEIF   G   
Sbjct: 568 RENEVFRSLIDNVPVSIYAKRSDLRQFYVNKGWCDLTGLGKEEAIGKTDVEIFGPDGEAF 627

Query: 275 ESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETI---GVNYMGMDVT 331
            + D    VL  G   + E T  T   GS      V   F++ G  I   G  Y+    T
Sbjct: 628 VAGDLA--VLRTGETQEIEETV-TLADGS------VRHQFARKGAMIASDGSLYLIGSTT 678

Query: 332 DQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSM 391
           D    + + A+LRE  A Q+A   +  K+           + LA MSHEIR+P+ GV+ M
Sbjct: 679 DITELKMREAELRE--ARQRAVLADRAKS-----------EFLANMSHEIRTPMNGVLGM 725

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
           AE+L+ + LD +Q+    +++ SG+ +L +INDILD SK+++G + L+ A F   E ++ 
Sbjct: 726 AELLAKSNLDPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIED 785

Query: 452 VLQTAAASLQKILMLEGDIADDVPIE------VIGDVLRIRQILTNLISNAIKFTPEGKV 505
           V     A+L      E D+   V IE       IGDV RIRQI+TNL+ NA+KFT EG V
Sbjct: 786 V-----ATLVSTRAKEKDLELIVRIEPRLGSLFIGDVGRIRQIVTNLLGNAVKFTDEGHV 840



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 34/180 (18%)

Query: 832  EMQEKPDRISQSPSSSSAEV--PETKPK--------PKPKILLVEDNKINVMVAKSMMKQ 881
            E    P R S +PS   A++  P  +P+         +  IL+ EDN++N MV   ++ +
Sbjct: 1087 EAPNAPQRQSLAPSEQRAQLQPPPVRPRLPAVGGDGQRLDILVAEDNEVNQMVFTQILGE 1146

Query: 882  LGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSF-EDTGNWDAAAEA 940
             G+  ++V+NG +A+ A    N  +ILMDV MP M GL+AT  IR   EDTG        
Sbjct: 1147 TGYGFEIVSNGRKALDAFGKLNPCMILMDVSMPEMSGLEATAAIRRLEEDTGT------- 1199

Query: 941  GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                             +PI+ +TA+AL    E C   GMD ++ KP++ + L E +E++
Sbjct: 1200 ----------------HVPIVGVTAHALKGDRERCLEAGMDDYLPKPISPRALLEKVERW 1243



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 44/66 (66%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIPE  L  +F K+ QV     R++ GTGLGLAI  +LVELMGG++ V S    
Sbjct: 859 VTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGKIGVESAEGK 918

Query: 656 GSTFTF 661
           GSTF F
Sbjct: 919 GSTFWF 924


>gi|359798162|ref|ZP_09300736.1| Proline sensor PrlS [Achromobacter arsenitoxydans SY8]
 gi|359363708|gb|EHK65431.1| Proline sensor PrlS [Achromobacter arsenitoxydans SY8]
          Length = 1090

 Score =  126 bits (316), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 97/140 (69%), Gaps = 1/140 (0%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LATMSHEIR+PL GV+   E++S T+LD  QRQ L  M SS  ++LQLI+DILD++K+E
Sbjct: 512 FLATMSHEIRTPLYGVLGTLELMSLTRLDSNQRQHLERMQSSSAILLQLISDILDITKIE 571

Query: 433 SGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +  + LE+  F PRE+V+    + AA + QK L+L   +   VP  + GD +RIRQIL+N
Sbjct: 572 TDQLVLESVDFNPRELVQSCTNSYAATAAQKGLLLFSCVDVAVPEWMTGDAVRIRQILSN 631

Query: 492 LISNAIKFTPEGKVGIKLYV 511
           L+SNAIKF+  G V ++L V
Sbjct: 632 LLSNAIKFSHSGHVIVRLGV 651



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 26/137 (18%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           +L+ EDN IN    +  ++QLG  + + ++G EA+       YD++L DV MP M+G + 
Sbjct: 863 VLVAEDNPINQATLRQQLEQLGCEVTLTSDGSEALMYWGLSKYDVVLTDVNMPQMNGYEL 922

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            R +R+   T                          IPII  TANA+ E  E C A GM 
Sbjct: 923 ARELRARGAT--------------------------IPIIGFTANAMREEEERCLAAGMT 956

Query: 982 SFVSKPVTFQKLKECLE 998
           S++ KP++   L   L+
Sbjct: 957 SWLVKPISLSTLLRHLQ 973



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 596 VYDTGIGIPENALPTLFRKYMQV-SADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           V DTG+GI +     LF  + Q+ S  H  +  G G+GL+IC +L +LMG  + VTS + 
Sbjct: 665 VVDTGVGIGKEEQARLFVPFHQIDSTSHTVR--GAGIGLSICARLAKLMGSEIRVTSALG 722

Query: 655 CGSTFTFILPYQVSPIEENSDDPDDLSDMA 684
            GS+F+  L   V  +     +  DLSD++
Sbjct: 723 LGSSFSLELALPV--VTGQPANAPDLSDIS 750


>gi|381160704|ref|ZP_09869936.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
 gi|380878768|gb|EIC20860.1| signal transduction histidine kinase [Thiorhodovibrio sp. 970]
          Length = 895

 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 97/147 (65%), Gaps = 2/147 (1%)

Query: 369 RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           RAK Q LA +SHEIR+PL GV+   ++L ++ LD +QR+LL   +  G  +LQLINDILD
Sbjct: 505 RAKSQFLANISHEIRTPLNGVLGTLQLLEDSHLDEDQRRLLATGLECGQTLLQLINDILD 564

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIR 486
            SK+E+G+++L  + F PRE++  +    A   + K + LE  +A +VP  +  D  R+R
Sbjct: 565 FSKIEAGMLELRPSTFAPRELLNAICAIFALQTKPKAVHLEYSVAREVPSLMRADAGRLR 624

Query: 487 QILTNLISNAIKFTPEGKVGIKLYVVP 513
           QIL NLI NA+KFT +G++ I+L   P
Sbjct: 625 QILLNLIGNAVKFTDQGRIDIRLKATP 651



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 28/159 (17%)

Query: 842  QSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
            Q  +S+ A++P +       IL+ ED   N +V + ++ +LGH +  V NG  A+ A+  
Sbjct: 762  QPANSTGAKLPLS-------ILVAEDEPANRLVVQKLLAKLGHQVTCVENGQLALDALAA 814

Query: 902  QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII 961
             ++DLILMDV MP +DGL ATR IR+ +   +W                     + IPII
Sbjct: 815  GHFDLILMDVQMPKLDGLDATRHIRT-DPQADWP--------------------RDIPII 853

Query: 962  AMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            A+TA+A  + A+   A GM  F+ KP+ F  LK+ L +Y
Sbjct: 854  ALTAHAFEQDADHFIAAGMTDFLPKPIDFAALKKLLARY 892



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           ++C V DTGIG+    +  LF  + Q  A   R+Y GTGLGL+I K+L++  GG + + +
Sbjct: 661 LQCTVEDTGIGMDPAMVDQLFEPFTQADASDTRRYKGTGLGLSIVKRLIDQFGGDIQINT 720

Query: 652 KVHCGSTFTFILPYQVSPIEENSDDPDDLS 681
           K+  G    F LP +V     +   PD L+
Sbjct: 721 KLGDGCRIQFSLPVEVVAPAPDIASPDPLA 750


>gi|71906576|ref|YP_284163.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal:Hpt
           [Dechloromonas aromatica RCB]
 gi|71846197|gb|AAZ45693.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Dechloromonas aromatica RCB]
          Length = 852

 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 107/171 (62%), Gaps = 2/171 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L+ +I+  KA E+ L     + E   +A+   LA MSHEIR+P+ G++ M E+  +T+LD
Sbjct: 170 LQRDISDVKAAESALISAKEVAESANKARGAFLANMSHEIRTPMNGIIGMTELALDTQLD 229

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL- 460
            EQR  L  + SS + +L ++NDILD SK+E+G M+ E+  F  ++ V   ++  A S  
Sbjct: 230 AEQRHYLKTVKSSAEALLTIVNDILDFSKIEAGKMEFESLVFSMQDTVLEAVRVLAVSAH 289

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
           +K L L  D+  +VP  ++GD  R+RQ++ NLI NAIKFT  G+V +K+ V
Sbjct: 290 KKGLELVADVRPEVPARIVGDPTRLRQVIINLIGNAIKFTERGEVALKVEV 340



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 15/138 (10%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           ILLVEDN +N  +A  ++++  H + + NNG EAV      ++D+ILMD+ MPVM G++A
Sbjct: 592 ILLVEDNPVNQELATRLLERQSHRVSLANNGAEAVDLFDSGHFDVILMDMQMPVMGGIEA 651

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
           T  IRS E   +W                 S+  K + IIAMTAN ++   + C   GM+
Sbjct: 652 TEAIRSREMRRSWVV---------------SHELKPVYIIAMTANVMATDRDRCLEAGMN 696

Query: 982 SFVSKPVTFQKLKECLEQ 999
            +V+KP+  ++L   LE+
Sbjct: 697 DYVAKPLRSEELYAALER 714



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%)

Query: 582 MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
           +D+  E +V++R  + DTGIG+P +    +F  + Q      R++GGTGLGLAI  +LV+
Sbjct: 340 VDQSTERSVYLRFSIRDTGIGVPADKQQAIFEAFSQADVSTTRRFGGTGLGLAISARLVQ 399

Query: 642 LMGGRLTVTSKVHCGSTFTFILPYQV 667
           LM G++ + S    GS F+F   + V
Sbjct: 400 LMDGKIWLESTPGQGSVFSFTGRFGV 425


>gi|399017097|ref|ZP_10719297.1| PAS domain S-box [Herbaspirillum sp. CF444]
 gi|398104277|gb|EJL94424.1| PAS domain S-box [Herbaspirillum sp. CF444]
          Length = 1206

 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 175/374 (46%), Gaps = 85/374 (22%)

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKET----ELNKTIHI 363
           + + P+     + IG +Y+  D+T++ R  +++ + R+ +     ++T    + N+ + +
Sbjct: 464 VTISPILDDEKKIIGTSYIARDITERKRLEKELNQYRQRLEGLVEQQTRNLLDANRNLEL 523

Query: 364 T----EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLV 418
                E   RAK   L+ MSHEIR+P+  V+ +  +L  T L+ +QR L+  +I++G  +
Sbjct: 524 ALSRAESATRAKTNFLSNMSHEIRTPMNAVLGLTYLLEKTALNADQRNLMQKIIAAGHSL 583

Query: 419 LQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEV 478
           L +INDILD+S       K+EA +      ++HV                      P   
Sbjct: 584 LGIINDILDVS-------KIEAGRLE----IEHV----------------------PFR- 609

Query: 479 IGDVLRIRQILTNLISNAIKFTPEGKVG---IKLYVVPEPPFAKEGLKQKSKAYQSATDA 535
                     L+ ++ N +  T  G +G   ++L V     F   G++          DA
Sbjct: 610 ----------LSTVLENVVNITAPG-IGDKDVELVV----GFNDVGIEHLHG------DA 648

Query: 536 VKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCD 595
           ++ E  Q  +  AS+   F    HGE              +S   S+  ++   V +R  
Sbjct: 649 LRLE--QILTNLASNAIKF--TAHGE--------------ISIHVSVVSEVGDQVMLRFV 690

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGIPE+    +F  + Q      R+YGGTGLGL IC+ LV+LM G + V S+   
Sbjct: 691 VTDSGIGIPEDRQQDIFHAFTQEDTSTTRRYGGTGLGLTICRHLVQLMRGEIGVVSEPGK 750

Query: 656 GSTFTFILPYQVSP 669
           GS F F+LP+QV+P
Sbjct: 751 GSQFWFMLPFQVAP 764



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 26/143 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ--NYDLILMDVCMPVMDG 918
            ++L+V+D++IN  VAK +++  G  +  V +G EAV  ++      DL+LMD+ MPVMDG
Sbjct: 935  RVLVVDDSEINREVAKRILEADGAEVIAVADGSEAVDWLREHPDGADLVLMDIQMPVMDG 994

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
              AT  IR                         +   +++P+IA++A A     E     
Sbjct: 995  YTATHEIRE------------------------TLQLRQLPVIALSAGAFKAQQEAAMTA 1030

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GM+ F+SKP   +++   + Q+ 
Sbjct: 1031 GMNGFLSKPYNVEQIISTVRQHI 1053



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 27/143 (18%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ-----NYDLILMDVCMPVM 916
           +L+ +DN     V    +K +G  +D V +G +A+     +      YD+ L+D  MP M
Sbjct: 778 VLVADDNATARAVLADTVKSMGWQVDTVESGEDAISKTMVRLRHNLGYDIFLLDWRMPGM 837

Query: 917 DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
           DGL+A R IR                        SS+H +   +I +TA+   +      
Sbjct: 838 DGLEAARAIR----------------------EASSSHARSPIVIMVTAHGRDDVMTSPH 875

Query: 977 ANGMDSFVSKPVTFQKLKECLEQ 999
           A  +D+ ++KPV    L   + Q
Sbjct: 876 AELLDAVITKPVMPSTLYNTILQ 898


>gi|152995670|ref|YP_001340505.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836594|gb|ABR70570.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 789

 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 141/258 (54%), Gaps = 39/258 (15%)

Query: 281 REVLEKGLPAKRE----------ITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDV 330
           R+VL+ G P   E          I F+T         ++V P+F   G+ I V  +  D+
Sbjct: 85  RQVLQGGKPVSIEQAGMRGDGSQIYFDT---------LFV-PIFDSLGKPIFVCGVSRDI 134

Query: 331 TDQVRKREKMA-----KLREEIAVQKAKETELNKTIH-----------ITEETMRAKQ-M 373
           T ++++ E +A     KL E     +    EL++ +            I EE++ AK   
Sbjct: 135 T-KIKEAETVALKANEKLLEYSTALETINQELDRKVQERTKELENAKRIVEESLEAKSSF 193

Query: 374 LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433
           +A MSHEIR+P+  V+ ++ +   T L+ EQ+  +  ++SSG+ +L L+ND+LD SK+E+
Sbjct: 194 VARMSHEIRTPINAVIGLSHLALKTSLNHEQQDYINTILSSGENLLSLVNDVLDFSKIEA 253

Query: 434 GVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNL 492
           G M +E   F P+ +V+H +   A  + +K L +  DI+  +P  ++GD L I+Q+L NL
Sbjct: 254 GKMGIEEVPFSPKSIVQHAINMNAIKAEEKKLTVTVDISPSLPPMLLGDPLHIQQVLVNL 313

Query: 493 ISNAIKFTPEGKVGIKLY 510
           ++NA+KFT  G V +++Y
Sbjct: 314 VTNAVKFTERGGVCVRMY 331



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 58/87 (66%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           DE+ + +V +RCDV DTGIGI +  L  LF+ + Q      RK+GGTGLGL I +QL  L
Sbjct: 333 DENDDKSVLLRCDVIDTGIGISKAYLDQLFQSFHQADDSVTRKFGGTGLGLTISRQLCSL 392

Query: 643 MGGRLTVTSKVHCGSTFTFILPYQVSP 669
           M G + V S++  GSTF+F+LP  ++P
Sbjct: 393 MSGDIWVHSELGQGSTFSFVLPLNIAP 419



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 24/140 (17%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +LL EDN IN  V    +     ++DVV NG EA+  ++ + Y+L+LMD+ MP+MDGL A
Sbjct: 452  VLLAEDNIINQKVVLGYLDDTLINVDVVENGEEAIKKLEEKEYNLVLMDIQMPIMDGLTA 511

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            +R IR                         S+++  IPIIAMTA+   E+ ++    GM+
Sbjct: 512  SRKIR------------------------QSSNYGDIPIIAMTAHVSDEAKKQSAQAGMN 547

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
            + + KP+    L + L+++ 
Sbjct: 548  AHLDKPIKKFDLYKILQKHL 567


>gi|350297329|gb|EGZ78306.1| hypothetical protein NEUTE2DRAFT_80741 [Neurospora tetrasperma FGSC
           2509]
          Length = 1319

 Score =  125 bits (315), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 181/392 (46%), Gaps = 84/392 (21%)

Query: 284 LEKGLPAKREITFETELFGSKTFLIYVEPVFSK---SGETI-----GVNYMGMDVTDQVR 335
           LE  L  K  +  +   F  + +    +P+  +   +G +      GV    MDVT +++
Sbjct: 641 LESILGGKSPVELQDHKFAGRWYRTGFQPILRRDPLTGNSTEDFIEGVMGFIMDVT-ELK 699

Query: 336 KREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEI 394
            RE+      +I  Q  ++ +L       +E  R K Q LA MSHEIR+P+TGV+ MAE+
Sbjct: 700 DRER------DIEAQALEKRQLLANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMAEL 753

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
           L + +LD EQR+L   +  S + +L +INDILD S       K+E+ +    EV     Q
Sbjct: 754 LLDVELDAEQRELTENIFRSANALLTVINDILDFS-------KIESGRLDIEEV-----Q 801

Query: 455 TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
            + A               V I+ +G +L       +L   A  +     +GI L V+ +
Sbjct: 802 FSLA---------------VVIQEVGKMLSFTAERKSL---AFNYEICSDIGIDLVVMGD 843

Query: 515 PPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGT 574
           P   ++ +         AT+++K                F  + H               
Sbjct: 844 PGRVRQIITNL------ATNSIK----------------FTHEGH--------------- 866

Query: 575 PVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLA 634
            V    S++++ + T+ ++  + DTGIGI E  L  LF+ + Q     ARK+GGTGLGL 
Sbjct: 867 -VKLHVSVEQETDDTIEVKFVIQDTGIGIEEEVLKRLFQPFSQGDPSTARKFGGTGLGLT 925

Query: 635 ICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
           I K L+ELM GR+ + SK   G+T TF +P++
Sbjct: 926 ISKNLLELMKGRMALASKKDEGTTATFWIPFK 957



 Score = 76.6 bits (187), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 26/145 (17%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV------QCQNYDLILMDVCMPV 915
            IL+VEDN+IN  +A   +++LG  +    NG EA+  +      + +  D+ILMDV MP+
Sbjct: 1028 ILVVEDNEINQQIAIRTIRKLGFQVAAAWNGKEALEYLSKASTGKKRKPDIILMDVQMPL 1087

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            +DG   T L+R                      +   ++ + +PI+AMTA+A+    E+C
Sbjct: 1088 IDGYLCTHLLRHH--------------------APYRSYVRDVPIVAMTASAIQGDKEKC 1127

Query: 976  FANGMDSFVSKPVTFQKLKECLEQY 1000
               GMD ++SKPV    L+  L ++
Sbjct: 1128 KRAGMDDYLSKPVKRTTLERMLLRW 1152


>gi|431930089|ref|YP_007243135.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
 gi|431828392|gb|AGA89505.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
          Length = 697

 Score =  125 bits (315), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 190/432 (43%), Gaps = 105/432 (24%)

Query: 595  DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
            +V DTGIGIP + + T+F  + QV     R++GG+GLG  I + L +LMGG + V S   
Sbjct: 343  EVRDTGIGIPADKIATIFESFRQVDESTTRRFGGSGLGTTIARDLTQLMGGAIGVDSTEG 402

Query: 655  CGSTFTFILPY---QVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSS 711
             GS F   LP    +  P+  +S   + L  +                        +F  
Sbjct: 403  QGSRFWVRLPLPPSEAPPVATHSRRLNGLHAL------------------------IFER 438

Query: 712  NGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETA---PLEDACSVAEVAETL 768
            N T R  +L+                          R++ TA     ++A  VA+++  +
Sbjct: 439  NTTYR--RLI--------------------------REELTALGMRCDEAEDVAQLSRLI 470

Query: 769  SEPESSF--SHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHS---EANREMIQTSK 823
            ++P      + SP+P     V      H+   ++ +       +++    A  E + T+ 
Sbjct: 471  AQPADVLVVADSPQP-----VDMNAMLHLFRRTFEETLPCLCLTYAGRHTAQVEQLCTAH 525

Query: 824  TNEPQKICEMQEKPDRISQSPSSSSAE------------VPETKPKPKP-KILLVEDNKI 870
             ++P  I E+      + +  +++SA+             P T+P  +P +IL+ EDN I
Sbjct: 526  LDKPFLIEELIAALADLLEPSAATSAQNATATTKVSPRPAPVTRPDAEPIRILVAEDNAI 585

Query: 871  NVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFED 930
               V ++ + +LG S+ +V +G EA+ A +  ++D+  +D+ MP +DG+  TR  R+ E 
Sbjct: 586  AAKVIQTFLDRLGFSVVLVEDGEEALDAARASDFDIAFIDLRMPKLDGIAFTRAYRADER 645

Query: 931  TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTF 990
             G+                        +PI+A+TANA  ++   C   GMD F+SKPV  
Sbjct: 646  DGH------------------------LPIVALTANAAEDTKTACLEAGMDDFLSKPVKA 681

Query: 991  QKLKECLEQYFP 1002
            + L++ + ++ P
Sbjct: 682  EALRQVVARFVP 693



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/155 (45%), Positives = 96/155 (61%), Gaps = 7/155 (4%)

Query: 366 ETMRAKQ----MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQL 421
           E  RA Q     LATM+HE+R+PLTGV+ M ++L  T+L+ EQR+ +  +  S +L+  L
Sbjct: 178 EAERANQAKSDFLATMTHELRTPLTGVIGMTDLLETTELNSEQREYVIAISRSAELLGSL 237

Query: 422 INDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA-AASLQKILMLEGDIADDVPIEVIG 480
           I DILDLSK+++  ++LE   F  R  VK V       +L K L L   +A  +P  VIG
Sbjct: 238 IGDILDLSKIDARRLQLEETPFDLRATVKEVCNLMEPQALGKGLELVLRVAPGLPARVIG 297

Query: 481 DVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
           D LR RQIL NL+ NA+KFT +G+V  +L V P P
Sbjct: 298 DPLRTRQILLNLVGNAVKFTEQGEV--ELSVTPRP 330


>gi|344206163|ref|YP_004791304.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia JV3]
 gi|343777525|gb|AEM50078.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia JV3]
          Length = 923

 Score =  125 bits (315), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+  +  +  L+      +   +AK   LATMSHEIR+PL GV+   E+L +T LD  Q
Sbjct: 424 DISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHTSLDARQ 483

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
            Q L  + SS  ++LQLI+D+LD+SK+ESG + LE A F PRE+ + VL++ AAS   K 
Sbjct: 484 SQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSFAASATCKG 543

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L +       +P  V+GD  RIRQ+L NL+SNAIKFT  G+V +++  V
Sbjct: 544 LQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFTEHGRVVLRVRQV 592



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 31/154 (20%)

Query: 849 AEVPETKPKPKP-----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
           A +PET     P      +L VEDN IN ++    ++ LG  +++  +G+EA+   + Q+
Sbjct: 787 AALPETSRAATPMPLGLHVLAVEDNPINRVILAEQLRTLGCDVELAQDGLEALQRCREQS 846

Query: 904 YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
           +DL++ D+ MP MDG     L R   D GN                        +P+I  
Sbjct: 847 FDLVVTDINMPRMDG---HALARQLRDDGN-----------------------PVPVIGA 880

Query: 964 TANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
           TANA +E  E C A+GM  ++SKP+   +L++ L
Sbjct: 881 TANATAEERERCLASGMQGYLSKPIDIARLRKAL 914



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG+GI       LF  + QV    A    GTGLGL+I  +LV LM G L V S+   
Sbjct: 605 VTDTGVGIAAEEQARLFEPFRQVRG--AASAQGTGLGLSISDRLVRLMSGELQVVSEPGL 662

Query: 656 GSTFTFILPYQVSPIEENS 674
           GS+F+  LP  V    E+ 
Sbjct: 663 GSSFSVRLPLPVLAAAEDG 681


>gi|334343013|ref|YP_004555617.1| integral membrane sensor hybrid histidine kinase [Sphingobium
           chlorophenolicum L-1]
 gi|334103688|gb|AEG51111.1| integral membrane sensor hybrid histidine kinase [Sphingobium
           chlorophenolicum L-1]
          Length = 914

 Score =  125 bits (315), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 117/201 (58%), Gaps = 18/201 (8%)

Query: 313 VFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK- 371
           V  ++ E  GVN         +R  E+  +L E        ETEL    +  EE  RAK 
Sbjct: 351 VAQRTAELRGVN---------MRLEERTIQLEE-------SETELRAAKNRAEEATRAKS 394

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LA MSHEIR+P+ GV+  AE+L++T+L+  QR+ L ++  S D +L LINDILD SK+
Sbjct: 395 QFLANMSHEIRTPMNGVIGAAELLNDTRLNASQREYLTMITQSADALLHLINDILDFSKI 454

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LE   F  R+ +   LQ  A  + +K + L   +A DVP  + GD  R+RQ++ 
Sbjct: 455 EAGRLELEHVAFSLRDELADTLQAFAGRATEKGIELACHVALDVPDALEGDPHRLRQVVI 514

Query: 491 NLISNAIKFTPEGKVGIKLYV 511
           NL+ NA++FT  G+V + + V
Sbjct: 515 NLVGNALRFTERGEVVMDVAV 535



 Score = 99.4 bits (246), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 24/152 (15%)

Query: 852  PETKPKPKPK--ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909
            P+  P  +P   +L+ EDN +N  +A  ++++ GH + +V +G +AV A+   ++D++LM
Sbjct: 771  PQPAPHDRPSLHVLVAEDNAVNQRLALRLLEKRGHRVKIVGDGAQAVEALAQDSFDVVLM 830

Query: 910  DVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALS 969
            DV MP MDG +AT  IR  E                    G+  H   +PI+AMTA+A+ 
Sbjct: 831  DVQMPEMDGFQATAAIRERE-------------------RGTGQH---MPIVAMTAHAMR 868

Query: 970  ESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
               E C A GMD ++SKP+  +   E +E  F
Sbjct: 869  GDRERCLAAGMDDYISKPLRAEDFYEVVEGRF 900



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 24/172 (13%)

Query: 584 EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
           ED +A  W+R  V DTG GI  +    +F  + Q      R++GGTGLGL I  QLV+LM
Sbjct: 539 EDQQA--WLRFAVSDTGPGIAADKRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLM 596

Query: 644 GGRLTVTSKVHCGSTFTFILPYQVS-------PIEENSDDPDD---LSDMADQDSVTDDV 693
           GGRL + S V  GS F F + + ++       P E+ S        + D A    + D++
Sbjct: 597 GGRLELDSCVGRGSVFHFTIAFALAQGETPHPPAEQPSLHGLPVLIVDDNATNRRILDEM 656

Query: 694 TAGF------FQFQPRTLGSLFSSNGTSRSKKL------LPNSIGFASAHKV 733
             G+       +  P+ L +L ++ G  R  +L      +P+  GFA A ++
Sbjct: 657 IRGWGMKPLAVESGPKALAALRNAAGIGRPLRLVLLDMMMPDMDGFAVAKEI 708


>gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1233

 Score =  125 bits (315), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 126/224 (56%), Gaps = 5/224 (2%)

Query: 339 KMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSN 397
           +M     +I  ++  E  L +     E   RAK   LA MSHEIR+P+ G++ M E+  +
Sbjct: 571 RMTGTNADITARREAEAALRQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTELALD 630

Query: 398 TKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA 457
           T+L+ EQR+ LG++ SS D +L ++NDILD SK+ESG + +E  +F    +++  +++ A
Sbjct: 631 TELNSEQREYLGLVQSSADALLTILNDILDFSKIESGKLDIENIEFSLEHMLRETMKSLA 690

Query: 458 A-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
             + QK L L   +A DVP  ++GD  R+RQ++ NL+ NAIKFT  G++ + +  +   P
Sbjct: 691 VRAHQKQLELLLHVAPDVPDRLLGDPGRLRQVIVNLVGNAIKFTASGEIEVDVQCLKGAP 750

Query: 517 FAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHG 560
              EG  +   + +     +  +K Q   ++ S  +    +++G
Sbjct: 751 ---EGQMRMQFSVRDTGIGIARDKFQTIFESFSQADTSTTRRYG 791



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 22/159 (13%)

Query: 840  ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
            +S+ P ++   + E + +    +LL EDN +N  +A  ++ +LGH++ V NNG+EAV   
Sbjct: 973  VSEQPLTTRHSLKEMRRRLN--LLLAEDNAVNQTLATRLLTKLGHTVTVANNGIEAVQLW 1030

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
            Q  ++D ILMDV MP M+G  ATR IR  E                    G   H   I 
Sbjct: 1031 QNGSFDAILMDVDMPEMNGYDATRCIREQEQ-----------------QLGVGAH---IR 1070

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
            I+AMTA+A+  + EEC  NGMD +++KP+  + L + L+
Sbjct: 1071 IVAMTAHAMQGAREECLLNGMDGYLTKPIDTEALWQELD 1109



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E  + ++  V DTGIGI  +   T+F  + Q      R+YGGTGLGL I  QLV LMGG 
Sbjct: 751 EGQMRMQFSVRDTGIGIARDKFQTIFESFSQADTSTTRRYGGTGLGLTISAQLVSLMGGS 810

Query: 647 LTVTSKVHCGSTFTFILP---YQVSPIEE 672
           + + S+V  GS F F L      VSP+ E
Sbjct: 811 IALESEVGQGSNFYFTLDMPMLSVSPLAE 839


>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1702

 Score =  125 bits (315), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/214 (38%), Positives = 123/214 (57%), Gaps = 27/214 (12%)

Query: 323  VNYMGMDVTDQVRKREKMAK--------------LREEIAVQKA---------KETELNK 359
            VN M  ++T QVR   ++AK               + E+ + KA         KET +  
Sbjct: 1011 VNTMAANLTGQVRAIAEVAKSVTKGDFTRVISVEAKGEVNILKAIINEMIHNLKETTIKN 1070

Query: 360  TI--HITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGD 416
            T+     E   RAK   +A MSHEIR+P+ G++ M ++  +T+L+ EQR+ L ++ SS  
Sbjct: 1071 TLAKEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELNAEQREYLTMVQSSAA 1130

Query: 417  LVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVP 475
             +L +INDILD SK+E+G ++L+ + F  R ++   L+T A  S QK L +  DI  D P
Sbjct: 1131 SLLTIINDILDFSKIEAGRLELDKSDFSLRTILYETLKTLAWRSHQKGLEIICDIIPDTP 1190

Query: 476  IEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
              +IGD  R+RQI+TNL+ NAIKFT EG+V + +
Sbjct: 1191 DHLIGDPGRLRQIVTNLVGNAIKFTAEGEVSLTV 1224



 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 25/190 (13%)

Query: 815  NREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP---KILLVEDNKIN 871
            NR  + +   ++P    EM E     ++       ++    P+P P   +ILL EDN +N
Sbjct: 1422 NRSSVISGYLSKPVSPVEMLEVIQCSTKPLIKQLQQITRDTPQPAPIQSEILLAEDNVVN 1481

Query: 872  VMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDT 931
              +A  ++++ GH + +  NG++AV A + +++DLILMDV MP M G +AT  IR  E  
Sbjct: 1482 QRLAIRLLERFGHKVTLAENGLQAVAASEMKDFDLILMDVQMPHMGGFEATSTIRIREKV 1541

Query: 932  GNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
             N                      K  PIIAMTA+AL +  E+C   GMD ++SKP+   
Sbjct: 1542 MN----------------------KHTPIIAMTAHALQKDKEKCLNAGMDDYLSKPINPD 1579

Query: 992  KLKECLEQYF 1001
            +L+  +E+Y 
Sbjct: 1580 QLRAVIEKYL 1589



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            V +   V DTGIGIP   L  +F  + Q      RKYGGTGLGL I  +LVELMGG+L  
Sbjct: 1234 VTLAFSVADTGIGIPAEKLHLIFEAFSQADGSITRKYGGTGLGLTISTRLVELMGGKLKA 1293

Query: 650  TSKVHCGSTFTFI--LPYQVSPIE 671
             S    GS F FI   P   +P E
Sbjct: 1294 ESIPGKGSRFDFIAKFPLGQAPTE 1317


>gi|190572926|ref|YP_001970771.1| two-component sensor histidine kinase response regulator fusion
           protein [Stenotrophomonas maltophilia K279a]
 gi|190010848|emb|CAQ44457.1| putative two-component sensor histidine kinase response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
          Length = 923

 Score =  125 bits (315), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+  +  +  L+      +   +AK   LATMSHEIR+PL GV+   E+L +T LD  Q
Sbjct: 424 DISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHTSLDARQ 483

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
            Q L  + SS  ++LQLI+D+LD+SK+ESG + LE A F PRE+ + VL++ AAS   K 
Sbjct: 484 SQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSFAASATCKG 543

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L +       +P  V+GD  RIRQ+L NL+SNAIKFT  G+V +++  V
Sbjct: 544 LQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFTEHGRVMLRVRQV 592



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 31/154 (20%)

Query: 849 AEVPETKPKPKP-----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
           A  PET     P     ++L VEDN IN ++    ++ LG  +++  +G+EA+   + Q 
Sbjct: 787 AAQPETTRLAPPVPLGLRVLAVEDNPINRVILAEQLRTLGCDVELAQDGIEALQRCREQC 846

Query: 904 YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
           +DL++ D+ MP MDG     L R   D GN                        +P+I  
Sbjct: 847 FDLVVTDINMPRMDG---HALARELRDDGNL-----------------------VPVIGA 880

Query: 964 TANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
           TANA +E  E C A+GM  ++SKP+   +L++ L
Sbjct: 881 TANATAEERERCLASGMQGYLSKPIDIARLRKAL 914



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG+GI       LF  + QV    A    GTGLGL+I  +LV LM G L V S+   
Sbjct: 605 VTDTGVGIAAEEQARLFEPFRQVRG--AASAQGTGLGLSISDRLVRLMSGELQVVSEPGL 662

Query: 656 GSTFTFILPYQVSPIEENS 674
           GS+F+  LP  V    E+ 
Sbjct: 663 GSSFSVRLPLPVLAAAEDG 681


>gi|424667186|ref|ZP_18104211.1| hypothetical protein A1OC_00745 [Stenotrophomonas maltophilia
           Ab55555]
 gi|401069321|gb|EJP77843.1| hypothetical protein A1OC_00745 [Stenotrophomonas maltophilia
           Ab55555]
          Length = 923

 Score =  125 bits (315), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+  +  +  L+      +   +AK   LATMSHEIR+PL GV+   E+L +T LD  Q
Sbjct: 424 DISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHTSLDARQ 483

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
            Q L  + SS  ++LQLI+D+LD+SK+ESG + LE A F PRE+ + VL++ AAS   K 
Sbjct: 484 SQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSFAASATCKG 543

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L +       +P  V+GD  RIRQ+L NL+SNAIKFT  G+V +++  V
Sbjct: 544 LQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFTEHGRVMLRVRQV 592



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 31/154 (20%)

Query: 849 AEVPETKPKPKP-----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
           A  PET     P     ++L VEDN IN ++    ++ LG  +++  +G+EA+   + Q 
Sbjct: 787 AAQPETTRLAPPVPLGLRVLAVEDNPINRVILAEQLRTLGCDVELAQDGIEALQRCREQC 846

Query: 904 YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
           +DL++ D+ MP MDG     L R   D GN                        +P+I  
Sbjct: 847 FDLVVTDINMPRMDG---HALARELRDDGNL-----------------------VPVIGA 880

Query: 964 TANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
           TANA +E  E C A+GM  ++SKP+   +L++ L
Sbjct: 881 TANATAEERERCLASGMQGYLSKPIDIARLRKAL 914



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG+GI       LF  + QV    A    GTGLGL+I  +LV LM G L V S+   
Sbjct: 605 VTDTGVGIAAEEQARLFEPFRQVRG--AASAQGTGLGLSISDRLVRLMSGELQVVSEPGL 662

Query: 656 GSTFTFILPYQVSPIEENS 674
           GS+F+  LP  V    E+ 
Sbjct: 663 GSSFSVRLPLPVLAAAEDG 681


>gi|83310416|ref|YP_420680.1| Signal transduction histidine kinase [Magnetospirillum magneticum
            AMB-1]
 gi|82945257|dbj|BAE50121.1| Signal transduction histidine kinase [Magnetospirillum magneticum
            AMB-1]
          Length = 1018

 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 177/420 (42%), Gaps = 82/420 (19%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGI  +    LF+ + Q  +   R++GGTGLGL+I ++LV+LM G     S+   
Sbjct: 663  VADTGIGIDSSLRDRLFQPFTQAESSTTRRFGGTGLGLSITRRLVDLMDGTAGFESEPGV 722

Query: 656  GSTFTFILPYQVS-------PIEENSDDPDDLSDM-ADQDSVTDDVTAGFFQFQPRTLGS 707
            GS+F   LP  V+       PI E + D   L  +  D D+            + RTL +
Sbjct: 723  GSSFWCRLPLPVAESVPPETPIGEQTTDFIGLRILIVDPDT------------EERTLIA 770

Query: 708  LFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAE-VAE 766
            L +  G              A+  +V G  E   +  S       AP + A   A+ VA 
Sbjct: 771  LATEQGG-------------AAVVRVPGPREAEAA--SRKATATQAPFDLALITADSVAP 815

Query: 767  TLSEPESS----FSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTS 822
                P  +    F    +P +  ++ R   C      +   P T +   +   R +    
Sbjct: 816  EDLAPMGTTPLLFIDGQDPAHRFQLERRPNC----LGFLGRPLTRAQITAAVERII---G 868

Query: 823  KTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQL 882
               +P+ +C    +P+             P +       IL+ ED+ +N  V +  +  L
Sbjct: 869  PVAQPRPVCAPLPQPE-------------PRSTAWTGAPILVAEDHPVNQQVIRRQLHLL 915

Query: 883  GHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGI 942
            G   +V  +G  A+ A + + Y LIL D  MP+MDG + T  IR+ ED            
Sbjct: 916  GFPAEVFPDGAAALAAWRARPYCLILTDCHMPIMDGFQLTAAIRAEED------------ 963

Query: 943  EQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                   G++ H    PI+A+TANAL+  AE C   GMDS++SKPV    L+  +    P
Sbjct: 964  -------GTTRH---TPILALTANALAGEAERCVQAGMDSYLSKPVELPHLRAAISHLLP 1013



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 90/138 (65%), Gaps = 1/138 (0%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+P+ GV+ M E+L +T+LD +QR L+     SG  +L++++D+LD SK+E
Sbjct: 509 FLAAMSHEIRTPMNGVIGMLELLDHTELDNDQRDLVSTTRESGLSLLRILDDVLDFSKIE 568

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G ++LE    R   +V+ V+QT A A+  K L L   +   +P  ++ D +R+RQIL N
Sbjct: 569 AGRLELEQVPVRLDRIVESVVQTVAPAAAAKSLTLSAFVDPGLPPVLLADPVRLRQILFN 628

Query: 492 LISNAIKFTPEGKVGIKL 509
           L  NA+KFT +G V I +
Sbjct: 629 LAGNAVKFTAQGLVAIHM 646


>gi|56695022|ref|YP_165368.1| sensory box sensor histidine kinase/response regulator [Ruegeria
           pomeroyi DSS-3]
 gi|56676759|gb|AAV93425.1| sensory box sensor histidine kinase/response regulator [Ruegeria
           pomeroyi DSS-3]
          Length = 743

 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/252 (36%), Positives = 129/252 (51%), Gaps = 32/252 (12%)

Query: 262 KTDVEIFSGAG--VKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGE 319
           KTD+E+ +     V+  + F+ E+L       REI  ET L           PV  ++G 
Sbjct: 282 KTDLEVSNAIADAVEAGRPFRTEILNV-TKDGREIWMETNLV----------PVLDRNG- 329

Query: 320 TIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMS 378
                           K E    +  ++   KA+  EL       EE  RAK + LATMS
Sbjct: 330 ----------------KVEVTVAIERDVTAAKAQAEELAAARVAAEEGARAKAEFLATMS 373

Query: 379 HEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKL 438
           HEIR+P+ GVV MAE+LS TKL  EQRQ +  + SS   +L +INDIL+LS++++  M+L
Sbjct: 374 HEIRTPMNGVVGMAELLSETKLSIEQRQYVDTIRSSSTALLAIINDILELSRLDARKMEL 433

Query: 439 EAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAI 497
               F P   V+  ++      Q K L L  +   DVP  V GD  R+RQ+L NL+ NAI
Sbjct: 434 HPVNFDPVSCVRDTMRLLKPQAQAKGLRLSLETGADVPPLVYGDDGRLRQVLINLLGNAI 493

Query: 498 KFTPEGKVGIKL 509
           KFT  G V ++L
Sbjct: 494 KFTERGGVTLRL 505



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 27/143 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+ +DN++N ++    +  L   +D  ++G +AV   Q Q  D++ MD+ MPVM G++
Sbjct: 616  RVLVADDNRVNRLLMGKFLADLPIRLDFAHDGQQAVAMTQRQKPDIVFMDMSMPVMSGIE 675

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            ATR IR+ E                           R P I+A+TAN      E C A G
Sbjct: 676  ATRQIRAAE--------------------------GRQPLIVALTANTFDSDREACLAAG 709

Query: 980  MDSFVSKPVTFQKLKECLEQYFP 1002
            MD F+SKPV    L  CL  + P
Sbjct: 710  MDDFLSKPVGRADLFRCLLHHLP 732



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 46/70 (65%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIGI    +  +F ++ Q  AD  R YGGTGLGL I ++LV LMGGR+TV S + 
Sbjct: 519 EVEDTGIGIAAEKIERVFERFSQADADTTRLYGGTGLGLTISRELVALMGGRITVDSTLG 578

Query: 655 CGSTFTFILP 664
            GS FT  LP
Sbjct: 579 QGSCFTLCLP 588


>gi|421523865|ref|ZP_15970492.1| sensor histidine kinase/response regulator [Pseudomonas putida
           LS46]
 gi|402752110|gb|EJX12617.1| sensor histidine kinase/response regulator [Pseudomonas putida
           LS46]
          Length = 918

 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L +     +    AK + LATMSHEIR+PL GV+   E+LS T+LD +Q
Sbjct: 410 DISTRKQVEAALEEARQSADAANEAKTLFLATMSHEIRTPLYGVLGTLELLSRTRLDGQQ 469

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKI 463
           +  L  +  S   +LQLI D+LD+SK+E+G + LE ++F P E+V  V+Q  +AA+  K 
Sbjct: 470 KDYLHAIEGSSATLLQLICDVLDVSKIEAGQLILEVSEFSPLELVHEVVQNYSAAATSKG 529

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L L   +   +P  +IGDV RIRQIL NL+SNA+KFT  G+V +++ ++
Sbjct: 530 LQLYACLDPHLPERLIGDVSRIRQILNNLLSNAVKFTDCGRVVLRVRLL 578



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 26/149 (17%)

Query: 852  PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
            P+   +   ++L+ EDN IN ++ K  +++LG ++ + ++G EA+   +   +D++L DV
Sbjct: 788  PQEMRQLDLRVLVAEDNIINQLILKGQLEELGCTVVLASDGDEALQHWRPGRFDVVLSDV 847

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MP M+G    R +R                 Q   +          PII  TANA+   
Sbjct: 848  NMPRMNGYALARELR----------------RQGCLA----------PIIGATANAMRGE 881

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             E C A GM+  + KP   Q L  CL  Y
Sbjct: 882  EELCLAAGMNRCLVKPFALQALFNCLAPY 910


>gi|300024973|ref|YP_003757584.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526794|gb|ADJ25263.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 651

 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 105/171 (61%), Gaps = 2/171 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I V++  E EL    +  E   RAK + LATMSHEIR+P+ G++ M  ++ +T+LD EQ
Sbjct: 217 DITVERGVERELKDARNQAEMASRAKSRFLATMSHEIRTPMNGILGMISLMRDTQLDAEQ 276

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAAS-LQKI 463
           R    ++  S   +L L++DILD SK+E+G ++L +  F  +  V   +Q  A S   K 
Sbjct: 277 RTCARIVEDSTRALLNLVDDILDFSKIEAGKLELGSRPFSLKMCVAQAMQLLAPSAAAKR 336

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
           L     + +DVP  VIGD +R+RQI+ NL+SNAIKFT  G +G+ + + PE
Sbjct: 337 LSFTSTLTNDVPEWVIGDEMRVRQIVLNLLSNAIKFTETGGIGVCVSLAPE 387



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 26/169 (15%)

Query: 841  SQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            ++S S ++   P         +L+ EDN IN ++A+ ++ + G +  +V NG  A+ A++
Sbjct: 492  AESRSVATDVAPMLNVGGSFNVLIAEDNPINALLARKIVARAGGTSTIVGNGRLAIGAMR 551

Query: 901  ------CQNYDLILMDVCMPVMDGLKATRLIRS-FEDTGNWDAAAEAGIEQAMPSSGSSN 953
                     +DL+LMDV MP++DGL A R I+  F +  +  A                 
Sbjct: 552  ETLFNRQPAFDLVLMDVLMPIVDGLTAARAIKDLFHERRHSGAVCP-------------- 597

Query: 954  HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                 PI+A+TANA +E  E CFA GMD +++KP    +L + L ++ P
Sbjct: 598  -----PIVALTANAFAEDRERCFAAGMDDYLAKPFEACQLHDVLLRWMP 641



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTG+G+P   +  +F+++ Q S   AR  GGTGLGLAI K+L + MGG +   S
Sbjct: 397 IAIKVTDTGVGLPAEFISHMFQEFEQSSITMARHPGGTGLGLAISKRLAQAMGGDILAES 456

Query: 652 KVHCGSTFTFILPYQVS 668
               G++FT +L + ++
Sbjct: 457 GADRGASFTAVLRFGIA 473


>gi|194364516|ref|YP_002027126.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347320|gb|ACF50443.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
          Length = 925

 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+  +  +  L+      +   +AK   LATMSHEIR+PL GV+   E+L +T LD  Q
Sbjct: 426 DISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHTTLDPRQ 485

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
            Q L  + SS  ++LQLI+D+LD+SK+ESG + LE A F PRE+ + VL++ AAS   K 
Sbjct: 486 SQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAAFSPRELTESVLRSFAASATCKG 545

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L +       +P  V+GD  RIRQ+L NL+SNAIKFT  G+V +++  V
Sbjct: 546 LQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFTEHGRVVLRVRQV 594



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 26/137 (18%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           ++L+VEDN IN ++    ++ LG ++ +  +GVEA+   + Q +DL++ D+ MP MDG  
Sbjct: 806 RVLVVEDNPINRVILAEQLRTLGCTVALSQDGVEALSLCREQAFDLVVTDINMPRMDGHA 865

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
              L R   + GN                        +P+I  TANA +E  E C A+GM
Sbjct: 866 ---LARQLREDGN-----------------------PVPVIGATANATAEERERCLASGM 899

Query: 981 DSFVSKPVTFQKLKECL 997
             ++SKP+   +L++ L
Sbjct: 900 QGYLSKPIDIARLRKAL 916



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           VW    V DTG+GI       LF  + QV    A    GTGLGL+I  +LV LM G L V
Sbjct: 604 VW---QVTDTGVGIAAEEQARLFEPFRQVRG--AASAQGTGLGLSISDRLVRLMSGELQV 658

Query: 650 TSKVHCGSTFTFILPYQVSPIEENS 674
            S+   GS+F+  LP  V    E+ 
Sbjct: 659 VSEPGLGSSFSVRLPLPVLAAAEDG 683


>gi|418728346|ref|ZP_13286919.1| PAS domain S-box protein [Leptospira interrogans str. UI 12758]
 gi|410776863|gb|EKR56838.1| PAS domain S-box protein [Leptospira interrogans str. UI 12758]
          Length = 1015

 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 184/416 (44%), Gaps = 73/416 (17%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGI E  L  LFR + QV +   RKYGG+GLGL I K+L ELM G   +T K   
Sbjct: 661  VKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGE--ITVKSQV 718

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTA-GFFQFQPRTLGSLFSSNG- 713
             S   F L      +E   + P  + ++  ++  T  V +   FQF+ + +      NG 
Sbjct: 719  NSGSEFSLSILTEKLE--YEIPAGVQELHSKNLATSAVISIQEFQFKEQ-IKKFCERNGF 775

Query: 714  ---TSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE 770
                +R+ K    +I      +  G   T  +FP  N             ++E+   L +
Sbjct: 776  LVKMARTAK---ETIRIIGEEERIGVFLTDLNFPDMN-------------LSEMLNELKK 819

Query: 771  PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKI 830
               S   +     E E+      ++ T S F  P               Q     +P  +
Sbjct: 820  QNPSLKLTVILFMEKELKDS--YYLVTNSLFNRPG-------------FQIFMMFKPILL 864

Query: 831  CEMQEK-----PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHS 885
             E+ +      P ++ +  + +   + E  P    +ILLVEDN IN  +A  ++ +LG++
Sbjct: 865  EELSKNFEKAFPIKVLKKQNENKKFLSEKIP---LQILLVEDNVINQKIALRLLTKLGYN 921

Query: 886  IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945
             D   NG+E +  ++ +NYDLI MD+ MP +DG + T  IR  +D G           ++
Sbjct: 922  ADSALNGLEGIEKLKTKNYDLIFMDIQMPEIDGYETTFQIR--KDFG-----------KS 968

Query: 946  MPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             P            I+AMTANA+    E+C   GM++++SKP+  Q ++  +   F
Sbjct: 969  KPV-----------IVAMTANAMEGDREKCLEAGMNAYISKPIQIQDIESTIVLLF 1013



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 107/176 (60%), Gaps = 2/176 (1%)

Query: 334 VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMA 392
           + ++     +  EI  +K  E  L +   I E   +AK   LA MSHEIR+PL GV+   
Sbjct: 468 IHQKRVFLSVWHEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTV 527

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452
            +L  T L+ EQ++ L ++ SSG  +L L+NDILDLS++ESG +KLE     P ++   V
Sbjct: 528 SLLEGTFLNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLTNEV 587

Query: 453 LQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           +      + +K L++E +++ +VP  +I D  R+RQ+LTNLI N+IKFT +GK+ +
Sbjct: 588 VNLFRPMAEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEKGKIHL 643


>gi|119483406|ref|ZP_01618820.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119458173|gb|EAW39295.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1627

 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 175/342 (51%), Gaps = 51/342 (14%)

Query: 326  MGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSP 384
            +G+ +   V++ E + K +     Q+A+E +L K     +   +AK + LA MSHE+R+P
Sbjct: 1091 IGIQLGVAVQQAELLTKTQ-----QQAEELQLAK--ETADAANKAKSEFLANMSHELRTP 1143

Query: 385  LTGVVSMAEILSNT-KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
            L  ++   +++ N   L  E +Q + ++  +G+ +L LINDIL++SK+E+G + L    F
Sbjct: 1144 LNAILGFTQLMHNDPALSGEYQQYIHIISQAGEYLLNLINDILEMSKIEAGQLTLNENCF 1203

Query: 444  RPREVV---KHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFT 500
                ++   + +LQ  A    K L L+ D   +VP  +  D  ++RQ+L NL++NAIKFT
Sbjct: 1204 DLHCLLNSLEEMLQLKAKL--KGLQLQFDCDLNVPQFIATDDKKLRQVLINLLNNAIKFT 1261

Query: 501  PEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKE-EKHQPKSQTASDQNGFHDKKH 559
              G V +++       F++  LK  S +  + ++ VK+     P S++ S+         
Sbjct: 1262 ESGYVTLRV-------FSQPLLKHGSFSGDNQSELVKQLTPILPASESLSE--------- 1305

Query: 560  GEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVS 619
                           P +H N ++      + I  +V DTG+GI  + L  LF  + Q  
Sbjct: 1306 --------------APTNHPNHLE-----LIPIYFEVEDTGLGIAPHELDRLFEAFSQTE 1346

Query: 620  ADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
            A   +   GTGLGL I ++ V+LMGG + V+S+   GS F F
Sbjct: 1347 AGF-KSSEGTGLGLPISQRFVQLMGGEIKVSSQPGVGSIFAF 1387



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 24/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+VED   N ++   +++ +G  +   +NG EA+        DLI MD+ MPVM+G +
Sbjct: 1419 RILVVEDKFSNRLLLLKLLQSIGFDVKEAHNGQEAITIWSSWKPDLIFMDIRMPVMNGYE 1478

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ I+S  + GN                       +  IIA+TA+A  E  +   + G 
Sbjct: 1479 ATQYIKSTPE-GN-----------------------QTVIIALTASAFEEDRQMILSAGC 1514

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D F+ KP   +++   + Q+ 
Sbjct: 1515 DDFIRKPFQEEEILTVIRQHL 1535


>gi|417770682|ref|ZP_12418587.1| PAS domain S-box protein [Leptospira interrogans serovar Pomona str.
            Pomona]
 gi|418682235|ref|ZP_13243455.1| PAS domain S-box protein [Leptospira interrogans serovar Pomona str.
            Kennewicki LC82-25]
 gi|421116617|ref|ZP_15576997.1| PAS domain S-box protein [Leptospira interrogans serovar Canicola
            str. Fiocruz LV133]
 gi|400326245|gb|EJO78514.1| PAS domain S-box protein [Leptospira interrogans serovar Pomona str.
            Kennewicki LC82-25]
 gi|409947338|gb|EKN97337.1| PAS domain S-box protein [Leptospira interrogans serovar Pomona str.
            Pomona]
 gi|410011784|gb|EKO69895.1| PAS domain S-box protein [Leptospira interrogans serovar Canicola
            str. Fiocruz LV133]
          Length = 1015

 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 184/416 (44%), Gaps = 73/416 (17%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGI E  L  LFR + QV +   RKYGG+GLGL I K+L ELM G   +T K   
Sbjct: 661  VKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGE--ITVKSQV 718

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTA-GFFQFQPRTLGSLFSSNG- 713
             S   F L      +E   + P  + ++  ++  T  V +   FQF+ + +      NG 
Sbjct: 719  NSGSEFSLSILTEKLE--YEIPAGVQELHSKNLATSAVISIQEFQFKEQ-IKKFCERNGF 775

Query: 714  ---TSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE 770
                +R+ K    +I      +  G   T  +FP  N             ++E+   L +
Sbjct: 776  LVKMARTAK---ETIRIIGEEERIGVFLTDLNFPDMN-------------LSEMLNELKK 819

Query: 771  PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKI 830
               S   +     E E+      ++ T S F  P               Q     +P  +
Sbjct: 820  QNPSLKLTVILFMEKELKDS--YYLVTNSLFNRPG-------------FQIFMMFKPILL 864

Query: 831  CEMQEK-----PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHS 885
             E+ +      P ++ +  + +   + E  P    +ILLVEDN IN  +A  ++ +LG++
Sbjct: 865  EELSKNFEKAFPIKVLKKQNENKKFLSEKIP---LQILLVEDNVINQKIALRLLTKLGYN 921

Query: 886  IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945
             D   NG+E +  ++ +NYDLI MD+ MP +DG + T  IR  +D G           ++
Sbjct: 922  ADSALNGLEGIEKLKTKNYDLIFMDIQMPEIDGYETTFQIR--KDFG-----------KS 968

Query: 946  MPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             P            I+AMTANA+    E+C   GM++++SKP+  Q ++  +   F
Sbjct: 969  KPV-----------IVAMTANAMEGDREKCLEAGMNAYISKPIQIQDIESTIVLLF 1013



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 107/176 (60%), Gaps = 2/176 (1%)

Query: 334 VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMA 392
           + ++     +  EI  +K  E  L +   I E   +AK   LA MSHEIR+PL GV+   
Sbjct: 468 IHQKRVFLSVWHEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTV 527

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452
            +L  T L+ EQ++ L ++ SSG  +L L+NDILDLS++ESG +KLE     P ++   V
Sbjct: 528 SLLEGTFLNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLTNEV 587

Query: 453 LQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           +      + +K L++E +++ +VP  +I D  R+RQ+LTNLI N+IKFT +GK+ +
Sbjct: 588 VNLFRPMAEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEKGKIHL 643


>gi|403335252|gb|EJY66801.1| PAS fold family protein [Oxytricha trifallax]
          Length = 656

 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 156/658 (23%), Positives = 278/658 (42%), Gaps = 105/658 (15%)

Query: 373  MLATMSHEIRSPLTGVVSMAEILSNTKLD--------REQRQLLGVMISSGDLVLQLIND 424
              A+++H++R+PL  +++       +K D        +  RQ L +  SS   ++ ++ D
Sbjct: 74   FFASVAHDLRTPLNSLLASNL-NLLSKFDNIPMHLGHQRTRQSLLIQKSSIQFLINIVED 132

Query: 425  ILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVL 483
            I+D+SK E G  +L  + F   E+V  + + +   +LQK + L  +I  +  I +  D  
Sbjct: 133  IMDMSKFEFGQFQLSFSWFSFNEIVDEIFEISEFLALQKKIDLIKEIEIETNIMLYSDKK 192

Query: 484  RIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQP 543
            R++Q+L NL++NA+KFT  G V ++ Y V   P A     QK+K      D   E+    
Sbjct: 193  RLKQVLLNLVTNALKFTHHGYVKVRAYFVN--PIAL----QKNKMID--FDNSDEDNSNS 244

Query: 544  KSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGI 603
              +   D+N   DK        + +       ++H + +  + +  V    +V DTGIGI
Sbjct: 245  LFECQDDENLHSDKFSSRQSDINLYTASVLKEINHKSILINEEQQLV---VEVIDTGIGI 301

Query: 604  PENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
              +    LF+ + +V    +    G GLGL ICK++ E +GG++T+TS+   GSTFTF  
Sbjct: 302  KAHDQNNLFKIFGKVKTSDSINQQGVGLGLNICKKICEFLGGQITITSQEEKGSTFTF-- 359

Query: 664  PYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPN 723
               V  ++  S  P D  ++ +Q SV  D                    G ++ K     
Sbjct: 360  QVNVEKVKVTSQPPKD-QNLFNQCSVFLD--------------------GLNKYK----- 393

Query: 724  SIGFASAHKVNGFSETSY--SFPSNNRQKETAPLEDACSVAEVAETLSEPESSFSHSPEP 781
                    + N F +  Y  S   N  Q + +P++      ++    +E +  F  + E 
Sbjct: 394  ----TGDMRHNPFKDQPYYRSATENALQYKLSPMQ-----QQLHYLTTEQQKMFELAQEE 444

Query: 782  ENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTN--EPQKICEMQEKPDR 839
            +   ++    Q H++     Q P     + +    + +  S TN   PQ    M      
Sbjct: 445  DKLIDMPDPIQLHIQR----QMPQHHLNNQNNNGNQYMMNSTTNMSTPQSASYMNYYGGA 500

Query: 840  ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQL--------GHSIDVVNN 891
                   +S +  + K     +IL+V+DN  N++    M+++            ID   +
Sbjct: 501  QYYKSLGTSCQDADCK-----RILVVDDNHFNIIAMNLMLEEAFKIMKIEKAPEIDSAVD 555

Query: 892  GVEAVH------AVQCQN--YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIE 943
            G++ +        + C N  Y L+L+D+ MP M GL+  + IR+  D G           
Sbjct: 556  GLDGLEKMALKSKINCCNMPYKLVLIDLNMPNMGGLQMMKNIRAKLDDG----------- 604

Query: 944  QAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                  G  + +K    +  TA   + +     A G D F+ KP+  + L+  L + +
Sbjct: 605  ------GLMSKYKDTIFVLCTAQNENNTYPYKEA-GFDYFLEKPIDLKVLESILRKCY 655


>gi|455668749|gb|EMF33939.1| PAS domain S-box protein [Leptospira interrogans serovar Pomona str.
            Fox 32256]
          Length = 1015

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 184/416 (44%), Gaps = 73/416 (17%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGI E  L  LFR + QV +   RKYGG+GLGL I K+L ELM G   +T K   
Sbjct: 661  VKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGE--ITVKSQV 718

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTA-GFFQFQPRTLGSLFSSNG- 713
             S   F L      +E   + P  + ++  ++  T  V +   FQF+ + +      NG 
Sbjct: 719  NSGSEFSLSILTEKLE--YEIPAGVQELHSKNLATSAVISIQEFQFKEQ-IKKFCERNGF 775

Query: 714  ---TSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE 770
                +R+ K    +I      +  G   T  +FP  N             ++E+   L +
Sbjct: 776  LVKMARTAK---ETIRIIGEEERIGVFLTDLNFPDMN-------------LSEMLNELKK 819

Query: 771  PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKI 830
               S   +     E E+      ++ T S F  P               Q     +P  +
Sbjct: 820  QNPSLKLTVILFMEKELKDS--YYLVTNSLFNRPG-------------FQIFMMFKPILL 864

Query: 831  CEMQEK-----PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHS 885
             E+ +      P ++ +  + +   + E  P    +ILLVEDN IN  +A  ++ +LG++
Sbjct: 865  EELSKNFEKAFPIKVLKKQNENKKFLSEKIP---LQILLVEDNVINQKIALRLLTKLGYN 921

Query: 886  IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945
             D   NG+E +  ++ +NYDLI MD+ MP +DG + T  IR  +D G           ++
Sbjct: 922  ADSALNGLEGIEKLKTKNYDLIFMDIQMPEIDGYETTFQIR--KDFG-----------KS 968

Query: 946  MPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             P            I+AMTANA+    E+C   GM++++SKP+  Q ++  +   F
Sbjct: 969  KPV-----------IVAMTANAMEGDREKCLEAGMNAYISKPIQIQDIESTIVLLF 1013



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 107/176 (60%), Gaps = 2/176 (1%)

Query: 334 VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMA 392
           + ++     +  EI  +K  E  L +   I E   +AK   LA MSHEIR+PL GV+   
Sbjct: 468 IHQKRVFLSVWHEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGAV 527

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452
            +L  T L+ EQ++ L ++ SSG  +L L+NDILDLS++ESG +KLE     P ++   V
Sbjct: 528 SLLEGTFLNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLTNEV 587

Query: 453 LQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           +      + +K L++E +++ +VP  +I D  R+RQ+LTNLI N+IKFT +GK+ +
Sbjct: 588 VNLFRPMAEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEKGKIHL 643


>gi|406884947|gb|EKD32260.1| hypothetical protein ACD_77C00142G0007, partial [uncultured
            bacterium]
          Length = 1225

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 146/283 (51%), Gaps = 17/283 (6%)

Query: 239  DKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKR-----E 293
            DK LR +     F  L+   +     + ++  A  + +    RE+LE+ LP+       E
Sbjct: 728  DKNLRVKAANKRFYKLYNTKVEETEGMLLYDLANKQWNIPRLRELLEEILPSNTHFHDFE 787

Query: 294  ITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAK 353
            IT      G KT ++    +  K      +     D+T+Q+   +KM K           
Sbjct: 788  ITHTFPGVGEKTMVLNARRIIQKRNHEELILLAIADITEQMLSLQKMEK----------N 837

Query: 354  ETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMI 412
            E +L + I   E  ++ KQ  L+ MSHEIR+PL+ ++    +L  TKLD EQ++ +  + 
Sbjct: 838  EIKLLEAIEYAENAVKFKQQFLSNMSHEIRTPLSSILGFTNVLLKTKLDVEQKEFVHAIK 897

Query: 413  SSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIA 471
            +SG  + QLINDILDLSKVE+G M  E   F  R+++K  L T    + +K L L  +  
Sbjct: 898  TSGTSLSQLINDILDLSKVEAGKMTFEKHAFEIRKLIKSTLYTFDLKIKEKNLELIEEYD 957

Query: 472  DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
              +P  + GD +R+ QI+ NL+SNA+KFT +GK+ + + ++ E
Sbjct: 958  SQIPSMLFGDAVRLNQIILNLLSNAVKFTHKGKILLSVKLLNE 1000



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 582  MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
            ++ED E  V +   V D+GIGI    + ++F  + Q     A  YGGTGLGLAI KQLVE
Sbjct: 998  LNEDDE-NVTLEFSVIDSGIGIETEKINSIFNVFEQAEIGTANSYGGTGLGLAIVKQLVE 1056

Query: 642  LMGGRLTVTSKVHCGSTFTFILPYQ 666
              GG +++ SK+  GSTF+FILP++
Sbjct: 1057 AQGGSISLKSKIGEGSTFSFILPFE 1081



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 30/154 (19%)

Query: 853  ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVC 912
            +T+ KP  ++L+ ED  +N ++ K ++   G   ++V+NG  A+  +Q  NYD+ILMD+ 
Sbjct: 1096 DTEIKP-LRVLVAEDVALNKLLIKIILTDFGFEHEIVSNGKIAIEKLQTNNYDIILMDLQ 1154

Query: 913  MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            MP M+G +AT+ IR                 + M S        +IPIIA+TA+  +   
Sbjct: 1155 MPEMNGFEATQYIR-----------------KTMKS--------QIPIIALTADVTTADI 1189

Query: 973  EECFANGMDSFVSKPVT----FQKLKECLEQYFP 1002
             +C   GMD ++SKP+     + K+ E +++  P
Sbjct: 1190 SKCKDIGMDDYISKPINENLLYSKIVELVKKQNP 1223


>gi|436840385|ref|YP_007324763.1| Histidine kinase [Desulfovibrio hydrothermalis AM13 = DSM 14728]
 gi|432169291|emb|CCO22659.1| Histidine kinase [Desulfovibrio hydrothermalis AM13 = DSM 14728]
          Length = 568

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/141 (46%), Positives = 97/141 (68%), Gaps = 1/141 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+  ++ M E+L  TKLD EQR  L +  ++G+ +L +IND+L++SK+
Sbjct: 347 EFLANMSHEIRTPMHSILGMVELLKETKLDNEQRGFLDITSTAGESLLVIINDVLEISKI 406

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G +++E   F   E+V+ V+      + +K L L  +I+ DVP +V GD  RIRQ+LT
Sbjct: 407 EAGHLEIEKHDFLLHEMVERVVSMFEVDASKKGLELSCNISSDVPFKVTGDPTRIRQVLT 466

Query: 491 NLISNAIKFTPEGKVGIKLYV 511
           NLISN+IKFT +G V + LYV
Sbjct: 467 NLISNSIKFTADGVVEVSLYV 487



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D G+GI +     +F+ + Q  +  +RKYGGTGLGL I ++LV++MGG + V S V  
Sbjct: 496 VRDEGVGIAQEKQDIIFQSFTQADSSISRKYGGTGLGLPISRKLVDMMGGEMVVKSIVGE 555

Query: 656 GSTFTF 661
           GSTF F
Sbjct: 556 GSTFMF 561


>gi|92113759|ref|YP_573687.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
 gi|91796849|gb|ABE58988.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
          Length = 930

 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 129/232 (55%), Gaps = 10/232 (4%)

Query: 289 PAKREITFETELFGSKTFLIYVEPVFSKSGETIG--VNYMGMDVT-----DQVRKREKMA 341
           P +R IT    L G   F   + P  S+   T+G  +N +G  +       Q +  +   
Sbjct: 185 PLQRHITLLERLHGGD-FSARLTPRGSRELVTLGHQLNALGEQMMRLREDTQAQIDQTTF 243

Query: 342 KLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKL 400
            LRE +   + K  EL+       E  R K Q LA +SHEIR+PL G++   ++L  + L
Sbjct: 244 DLRESMETIEVKNIELDMAHRRALEANRIKSQFLANISHEIRTPLNGIIGFCQLLGRSAL 303

Query: 401 DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL 460
           D  QR+ L  + ++ D +L LI+D+LD SK+E+G ++LE        +V  VL   A + 
Sbjct: 304 DSRQREWLEQVQTASDNLLSLISDVLDFSKIEAGKLELETVPVDMVTLVDEVLGLQAPTA 363

Query: 461 Q-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
           Q K L L G + DDVP +++GD LRI+QILTNL++NA+KFT  G+V +++ +
Sbjct: 364 QRKSLHLLGLVYDDVPDQLLGDPLRIKQILTNLVNNAVKFTERGEVVVRVML 415



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 28/157 (17%)

Query: 850  EVPETKPKPKP-----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
            +VP   P P       K+L+V+D   N ++ K +++  G +  +  +G EA+   Q +  
Sbjct: 632  DVPSALPAPNAGVSPRKVLVVDDTPSNRLLVKELLQDRGLTPLLAGSGEEALAMAQSEPV 691

Query: 905  DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
             L+LMD+ MP M+G++  R +R   D                        ++R PI+A+T
Sbjct: 692  ALVLMDIQMPGMNGVETMRALRDLGD-----------------------EWQRCPIVALT 728

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            A+AL E  ++   +GM   + KP+    L   LE++ 
Sbjct: 729  AHALEEERQQLLRDGMSDCLIKPIREPALDAMLERHL 765



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 582 MDEDLEATVW-IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
           M +DL AT   +R  V DTGIG+   +   LF+ + Q  A  +RKYGGTGLGL I K+LV
Sbjct: 414 MLDDLNATSSKLRISVRDTGIGLDLPSRERLFQAFSQGDASRSRKYGGTGLGLMISKRLV 473

Query: 641 ELMGGRLTVTSK 652
           E MGG + V S+
Sbjct: 474 EQMGGDIDVESE 485


>gi|418712001|ref|ZP_13272748.1| PAS domain S-box protein [Leptospira interrogans str. UI 08452]
 gi|410791508|gb|EKR85182.1| PAS domain S-box protein [Leptospira interrogans str. UI 08452]
          Length = 1015

 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 184/416 (44%), Gaps = 73/416 (17%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGI E  L  LFR + QV +   RKYGG+GLGL I K+L ELM G   +T K   
Sbjct: 661  VKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGE--ITVKSQV 718

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTA-GFFQFQPRTLGSLFSSNG- 713
             S   F L      +E   + P  + ++  ++  T  V +   FQF+ + +      NG 
Sbjct: 719  NSGSEFSLSILTEKLE--YEIPAGVQELHSKNLATSAVISIQEFQFKEQ-IKKFCERNGF 775

Query: 714  ---TSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE 770
                +R+ K    +I      +  G   T  +FP  N             ++E+   L +
Sbjct: 776  LVKMARTAK---ETIRIIGEEERIGVFLTDLNFPDMN-------------LSEMLNELKK 819

Query: 771  PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKI 830
               S   +     E E+      ++ T S F  P               Q     +P  +
Sbjct: 820  QNPSLKLTVILFMEKELKDS--YYLVTNSLFNRPG-------------FQIFMMFKPILL 864

Query: 831  CEMQEK-----PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHS 885
             E+ +      P ++ +  + +   + E  P    +ILLVEDN IN  +A  ++ +LG++
Sbjct: 865  EELSKNFEKAFPIKVLKKQNENKKFLSEKIP---LQILLVEDNVINQKIALRLLTKLGYN 921

Query: 886  IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945
             D   NG+E +  ++ +NYDLI MD+ MP +DG + T  IR  +D G           ++
Sbjct: 922  ADSALNGLEGIEKLKTKNYDLIFMDIQMPEIDGYETTFQIR--KDFG-----------KS 968

Query: 946  MPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             P            I+AMTANA+    E+C   GM++++SKP+  Q ++  +   F
Sbjct: 969  KPV-----------IVAMTANAMEGDREKCLEAGMNAYISKPIQIQDIESTIVLLF 1013



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 107/176 (60%), Gaps = 2/176 (1%)

Query: 334 VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMA 392
           + ++     +  EI  +K  E  L +   I E   +AK   LA MSHEIR+PL GV+   
Sbjct: 468 IHQKRVFLSVWHEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTV 527

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452
            +L  T L+ EQ++ L ++ SSG  +L L+NDILDLS++ESG +KLE     P ++   V
Sbjct: 528 SLLEGTFLNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLTNEV 587

Query: 453 LQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           +      + +K L++E +++ +VP  +I D  R+RQ+LTNLI N+IKFT +GK+ +
Sbjct: 588 VNLFRPMAEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEKGKIHL 643


>gi|254443126|ref|ZP_05056602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257434|gb|EDY81742.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 724

 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 98/142 (69%), Gaps = 1/142 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ GVV MAE+L +T+L  EQR+ +  + +SG+ +L LIN+ILDLSK+
Sbjct: 200 EFLANMSHEIRTPMNGVVGMAELLGHTELGEEQREYVDTIRNSGEALLGLINNILDLSKL 259

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G M L+A +F PR V++  +    A   +K++ L G     VP ++IGD  R+RQ+L 
Sbjct: 260 EAGKMILDAIEFDPRSVLEDTVDLLGAKADEKLIELTGFAESQVPSKLIGDPSRLRQVLL 319

Query: 491 NLISNAIKFTPEGKVGIKLYVV 512
           NL+ NA+KFT  G V +++ ++
Sbjct: 320 NLVGNALKFTANGTVRLRVTLM 341



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 23/140 (16%)

Query: 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
           P  ++L+V+D+ +N  +A+ ++++LG   D+  NGVEA+     +NYDL+ MD  MP MD
Sbjct: 585 PSLRLLIVDDHPLNQGIARMILRRLGFQADIAVNGVEALDMTANRNYDLVFMDCQMPEMD 644

Query: 918 GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
           G +ATR IR  E  G                        R  I+AMTA+AL E  ++C  
Sbjct: 645 GFEATREIRKREKNGT-----------------------RTTIVAMTASALEEDRQKCLD 681

Query: 978 NGMDSFVSKPVTFQKLKECL 997
            GMD +++KPV  Q++ + L
Sbjct: 682 IGMDDYLTKPVKPQEIAQAL 701



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 48/76 (63%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTG+GI E     LF+ + Q     ARKYGGTGLGL+I +Q+   MGG++ + S
Sbjct: 350 LRFSVRDTGVGIDEEQQKRLFKPFSQAEGAVARKYGGTGLGLSISQQIARAMGGQILLES 409

Query: 652 KVHCGSTFTFILPYQV 667
           +   GS F+F L +++
Sbjct: 410 ERDKGSEFSFALRFKL 425


>gi|428221270|ref|YP_007105440.1| signal transduction histidine kinase [Synechococcus sp. PCC 7502]
 gi|427994610|gb|AFY73305.1| signal transduction histidine kinase [Synechococcus sp. PCC 7502]
          Length = 789

 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 19/242 (7%)

Query: 309 YVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETM 368
           +  PV S +G+  G  +   D+TD+        KL EE A+Q+AKE          E  +
Sbjct: 226 FSSPVTSPNGKFWGFVWRFRDITDR--------KL-EEKALQEAKEE--------AESAL 268

Query: 369 RAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           R K   LA MSHEIR+P+ GV+ M E+LS T L+++Q++ +  + +SG+++L +INDILD
Sbjct: 269 RIKSDFLAMMSHEIRTPINGVLGMTELLSTTPLEQDQQRFVQSIQTSGEILLTVINDILD 328

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIR 486
            SK+ESG + LE        +V       A   Q K + L  ++    P  +IGD +R+R
Sbjct: 329 FSKLESGKLLLEHIPLDVHAIVADTCSLLAKQAQEKGIELSCEVDASTPTYIIGDAIRLR 388

Query: 487 QILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQ 546
           QIL NL +NA+KFTP G V + + + P+     E L +   +    T A  E+  QP +Q
Sbjct: 389 QILLNLANNAVKFTPAGVVRLSVSLSPDTENGLELLFKVQDSGIGLTPAQLEKLFQPFTQ 448

Query: 547 TA 548
            +
Sbjct: 449 AS 450



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 79/140 (56%), Gaps = 21/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK- 920
            IL+ EDN IN  +  +M+ ++G++  VVNNG EA+ A++   YDL+ +DV MPVM+GL+ 
Sbjct: 533  ILIAEDNLINQELVLAMLGKMGYAPTVVNNGAEAIAALKTDTYDLVFLDVQMPVMNGLET 592

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT ++  + +                     S H  R  +IAMTA+A+    E C   GM
Sbjct: 593  ATYIVNQWVEI--------------------STHPSRPTLIAMTASAMQGDREMCLDAGM 632

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D +++KP+ F  L+  LE++
Sbjct: 633  DDYITKPIFFDTLQRILERW 652



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 60/97 (61%)

Query: 572 PGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGL 631
           P   V    S+  D E  + +   V D+GIG+    L  LF+ + Q S   ARKYGGTGL
Sbjct: 403 PAGVVRLSVSLSPDTENGLELLFKVQDSGIGLTPAQLEKLFQPFTQASISTARKYGGTGL 462

Query: 632 GLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           GLAIC++LV +MGGR+   S ++ GSTF+F+LP  ++
Sbjct: 463 GLAICQKLVRMMGGRIWAESVINEGSTFSFVLPAVIT 499



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 24/127 (18%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           IL+++D   N  V ++++    + +    +G  A+ +++    DLIL+DV MP MDG++ 
Sbjct: 6   ILIIDDEADNFDVIETLLSDQNYQLHYAESGEIAIASLEVFQPDLILLDVMMPNMDGIEV 65

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            ++IR+  +                        +K IPI+ +TA    E   +C   G  
Sbjct: 66  CKVIRTLPE------------------------WKAIPIVMVTALNSKEDLAKCLNAGAT 101

Query: 982 SFVSKPV 988
            F+SKP+
Sbjct: 102 DFISKPL 108


>gi|418692220|ref|ZP_13253299.1| PAS domain S-box protein [Leptospira interrogans str. FPW2026]
 gi|400358010|gb|EJP14129.1| PAS domain S-box protein [Leptospira interrogans str. FPW2026]
          Length = 1015

 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/416 (27%), Positives = 184/416 (44%), Gaps = 73/416 (17%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGI E  L  LFR + QV +   RKYGG+GLGL I K+L ELM G   +T K   
Sbjct: 661  VKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKKLAELMKGE--ITVKSQV 718

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTA-GFFQFQPRTLGSLFSSNG- 713
             S   F L      +E   + P  + ++  ++  T  V +   FQF+ + +      NG 
Sbjct: 719  NSGSEFSLSILTEKLE--YEIPAGVQELHSKNLATSAVISIQEFQFKEQ-IKKFCERNGF 775

Query: 714  ---TSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE 770
                +R+ K    +I      +  G   T  +FP  N             ++E+   L +
Sbjct: 776  LVKMARTAK---ETIRIIGEEERIGVFLTDLNFPDMN-------------LSEMLNELKK 819

Query: 771  PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKI 830
               S   +     E E+      ++ T S F  P               Q     +P  +
Sbjct: 820  QNPSLKLTVILFMEKELKDS--YYLVTNSLFNRPG-------------FQIFMMFKPILL 864

Query: 831  CEMQEK-----PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHS 885
             E+ +      P ++ +  + +   + E  P    +ILLVEDN IN  +A  ++ +LG++
Sbjct: 865  EELSKNFEKAFPIKVLKKQNENKKFLSEKIP---LQILLVEDNVINQKIALRLLTKLGYN 921

Query: 886  IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945
             D   NG+E +  ++ +NYDLI MD+ MP +DG + T  IR  +D G           ++
Sbjct: 922  ADSALNGLEGIEKLKTKNYDLIFMDIQMPEIDGYETTFQIR--KDFG-----------KS 968

Query: 946  MPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             P            I+AMTANA+    E+C   GM++++SKP+  Q ++  +   F
Sbjct: 969  KPV-----------IVAMTANAMEGDREKCLEAGMNAYISKPIQIQDIESTIVLLF 1013



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 107/176 (60%), Gaps = 2/176 (1%)

Query: 334 VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMA 392
           + ++     +  EI  +K  E  L +   I E   +AK   LA MSHEIR+PL GV+   
Sbjct: 468 IHQKRVFLSVWHEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTV 527

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452
            +L  T L+ EQ++ L ++ SSG  +L L+NDILDLS++ESG +KLE     P ++   V
Sbjct: 528 SLLEGTFLNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLTNEV 587

Query: 453 LQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           +      + +K L++E +++ +VP  +I D  R+RQ+LTNLI N+IKFT +GK+ +
Sbjct: 588 VNLFRPMAEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEKGKIHL 643


>gi|428770084|ref|YP_007161874.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
           aponinum PCC 10605]
 gi|428684363|gb|AFZ53830.1| integral membrane sensor hybrid histidine kinase [Cyanobacterium
           aponinum PCC 10605]
          Length = 765

 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/246 (36%), Positives = 138/246 (56%), Gaps = 20/246 (8%)

Query: 329 DVTDQVRKREKMAKLREEIAVQ--KAKETELN--KTIHITEETMRAK-QMLATMSHEIRS 383
           D++ Q R+  +    RE+I V+  KA +T+LN  K     E   +AK + LA MSHEIR+
Sbjct: 332 DLSKQQREDRRQ---REKILVEYNKALKTQLNLAKAKEKAEIVAKAKSEFLANMSHEIRT 388

Query: 384 PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
           P+ GV+ MA++LS T L+ EQ+  +  +I SG+ +L +INDILD SK+ESG ++LE   F
Sbjct: 389 PMNGVIGMAQLLSLTHLNEEQQTYVHTIIDSGETLLTIINDILDFSKIESGNLQLEERPF 448

Query: 444 RPREVVKHVLQTAAASLQK-ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
             RE++K ++   +   +K  + +   IA  +P  ++GD +R RQIL NL+ N+IKFT  
Sbjct: 449 AFREIIKTIINLLSPQAEKNNIRISCFIAPQIPSNLLGDSIRFRQILLNLMGNSIKFTHV 508

Query: 503 GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEK------HQPKSQTASDQNGFHD 556
           G   IK+Y   +  ++++G ++     +     V  E+       QP SQ     N    
Sbjct: 509 GS--IKIYADIKNVYSQQGWQEYEIMIRVEDTGVGIERDRLSYLFQPFSQA---DNSITR 563

Query: 557 KKHGEG 562
           K  G G
Sbjct: 564 KYGGTG 569



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 28/156 (17%)

Query: 845 SSSSAEVPETKPKPKP---KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
           S  S  + E     KP   +ILL EDN +N  V  S +K+LG+S D+  NG+E ++ ++ 
Sbjct: 630 SKKSFCIIENLDNIKPSNLQILLAEDNLVNQKVTLSFLKKLGYSADIAKNGLEVLNKIEN 689

Query: 902 QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII 961
           + YD+ILMDV MP MDGL  T+ IR            E  I+Q               II
Sbjct: 690 KTYDIILMDVQMPEMDGLTTTKKIR------------EMSIKQPF-------------II 724

Query: 962 AMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
           A+TANAL +  + C   GM+ ++ KPV   +L + +
Sbjct: 725 ALTANALDQDQQMCLFAGMNDYIRKPVKINELNQAI 760



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 39/65 (60%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTG+GI  + L  LF+ + Q      RKYGGTGLGLAI K L+ LMGG + V S
Sbjct: 531 IMIRVEDTGVGIERDRLSYLFQPFSQADNSITRKYGGTGLGLAISKTLINLMGGTIWVES 590

Query: 652 KVHCG 656
             + G
Sbjct: 591 NGNIG 595


>gi|189424785|ref|YP_001951962.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421044|gb|ACD95442.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 881

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L  +I   K  + EL +  H  E   RAK + LA MSHEIR+P+ GVV MA++L  T+  
Sbjct: 479 LLRDITESKHYQEELLEARHSAEAANRAKSEFLANMSHEIRTPMNGVVGMAQLLRYTQPT 538

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL- 460
           REQ + L  +  S   +L+LINDILDLS++ESG ++LEAA F  R  ++ V+   A+ + 
Sbjct: 539 REQEEYLDNLELSCKNLLELINDILDLSRIESGKLELEAAVFSLRSCIQEVVSNQASRIE 598

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           QK L L   + + VP +V+GD LR +QIL NL+ NAIKFT  G + +
Sbjct: 599 QKGLQLLTSLDEQVPEQVVGDSLRFKQILLNLLGNAIKFTEAGSITV 645



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/146 (40%), Positives = 73/146 (50%), Gaps = 22/146 (15%)

Query: 848 SAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLI 907
           SAE  +T    + KIL+ EDNK+N     +M+KQ+GH    V+NG EA+       ++ I
Sbjct: 748 SAEPVQTVMNRRLKILVAEDNKLNADTIVAMLKQMGHESLAVSNGREALEKWHASAFNCI 807

Query: 908 LMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967
           LMD+ MPVMD              GN  AA     EQ M       H    PIIAMTA+A
Sbjct: 808 LMDIQMPVMD--------------GNLSAATIRKQEQKM-----GGH---TPIIAMTAHA 845

Query: 968 LSESAEECFANGMDSFVSKPVTFQKL 993
           L    E   A G D +VSKPV  Q L
Sbjct: 846 LHGDRERFLAEGFDGYVSKPVEMQAL 871



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 49/85 (57%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            R  V DTGIG+ E  L  +F  + Q  +   R YGG+GLGLAIC++L ELMGGR+   S
Sbjct: 659 FRLMVSDTGIGMTEETLQRIFNSFEQADSSTTRVYGGSGLGLAICRRLTELMGGRIWAES 718

Query: 652 KVHCGSTFTFILPYQVSPIEENSDD 676
               GS F   LP+ + P E N  D
Sbjct: 719 TFGKGSAFFVELPFALPPAEGNGGD 743


>gi|359686884|ref|ZP_09256885.1| multi-sensor hybrid histidine kinase [Leptospira licerasiae serovar
           Varillal str. MMD0835]
 gi|418751438|ref|ZP_13307724.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
 gi|418756211|ref|ZP_13312399.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
           str. VAR 010]
 gi|384115882|gb|EIE02139.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
           str. VAR 010]
 gi|404274041|gb|EJZ41361.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
          Length = 1277

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 151/302 (50%), Gaps = 24/302 (7%)

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPS---LHEEDILGKTDVEIFSGAGV 273
           L R  + L   +++AP  +   D E++Y  +   + S   L  ++I+G +  E+F     
Sbjct: 629 LFREKSRLSAFVEHAPAAVAMFDTEIKYIAVSERWLSEYHLSGKNIIGLSHYEVFRNIS- 687

Query: 274 KESQDFKREVLEKGLPAKREITFETELFGSKTFLIY-VEPVFSKSGETIGVNYMGMDVTD 332
           +E ++  R  L   +    E  +  E +    +L + V P +   G   G+     D+T+
Sbjct: 688 EEWRNIHRRCLSGEVLKNEEDIWRPEGWEHDQYLRWEVRPWYQLDGSIGGIMMFTQDITE 747

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSM 391
              +RE                 EL K     E+  RAK   LA MSHEIR+PL G++  
Sbjct: 748 SCLQRE-----------------ELKKAKLAAEQANRAKSDFLANMSHEIRTPLNGIIGF 790

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
           +++L  T +D  Q Q +  +  S + +L +INDILD SK+E+G ++L   K    E+   
Sbjct: 791 SDLLLRTSMDSTQHQYMMTVFQSAESLLDIINDILDFSKIEAGKLELSYEKTNLLELCGQ 850

Query: 452 VLQTAAASLQKI-LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
           +L T     QK  + +  ++A DVP  V  D +R+RQI+ NL+SN++KFT EG++  K+ 
Sbjct: 851 ILSTIKFQAQKKGIEVIVNVAWDVPRFVKADSVRLRQIIVNLVSNSVKFTKEGEIEFKIE 910

Query: 511 VV 512
           ++
Sbjct: 911 LI 912



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 25/130 (19%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVV--NNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
            +L+ EDN +N+M+AKS++K++    + +    G EAV   +    DLI MD+ MP M+G 
Sbjct: 1158 VLIAEDNSVNMMLAKSIVKKILPKANCIEARTGREAVDMYREMYPDLIFMDIQMPEMNGY 1217

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +AT+ IR+ E  G                       +R+PI+A+TA  ++   E C   G
Sbjct: 1218 EATKAIRALEKNG-----------------------RRVPIVAVTAGIVAGERERCMEAG 1254

Query: 980  MDSFVSKPVT 989
            MD ++SKP  
Sbjct: 1255 MDDYISKPAV 1264



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 45/79 (56%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
             R  V DTGIGI  +A   +F  + Q      RK+GGTGLGL I  +L+ +MG  L + S
Sbjct: 922  FRFSVRDTGIGIAPDARDKIFEAFTQGDVSTTRKFGGTGLGLTISNKLLSMMGSSLQLKS 981

Query: 652  KVHCGSTFTFILPYQVSPI 670
            ++  GSTF F L   +S I
Sbjct: 982  ELGKGSTFYFDLKLNISEI 1000


>gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
 gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
          Length = 831

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 8/197 (4%)

Query: 324 NYMGMDVTDQVRKR------EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLAT 376
           N+  + V  Q ++R       ++A +  ++   + +E EL +     E   RAK + LA 
Sbjct: 119 NWRWVQVLGQAKERGADGRWRQLAGIYRDVTRHRLRELELLQAKEAAEAASRAKGEFLAN 178

Query: 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
           MSHEIR+P+ G++ M ++L ++ L  EQR  L  + SS + +L L+NDILD S++E+G +
Sbjct: 179 MSHEIRTPMNGILGMTDLLLDSALAPEQRDYLQTVKSSAEALLTLLNDILDFSRIEAGRL 238

Query: 437 KLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
            LE   F    +V   L+T A  + QK + L  D+A DVP  + GD  RIRQ+LTNL+ N
Sbjct: 239 SLEEIDFSISGLVAETLRTLALRAHQKGVELFFDVAPDVPAVLKGDPARIRQVLTNLVGN 298

Query: 496 AIKFTPEGKVGIKLYVV 512
           AIKFT  G++ + + VV
Sbjct: 299 AIKFTERGEIELDVTVV 315



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 83/136 (61%), Gaps = 15/136 (11%)

Query: 853 ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVC 912
           E  P+ +  ILLVEDN +N  VA  M++++GH + VVNNG EA+ A    ++DL+LMD+ 
Sbjct: 563 ERAPERRLDILLVEDNPVNQTVASRMLERVGHKVTVVNNGAEAIEAFDAGHFDLVLMDLQ 622

Query: 913 MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
           MPVM G++AT+ IR+ E   +W  A + G             ++ +PI+AMTA+A+    
Sbjct: 623 MPVMGGIEATQAIRAREARRSW--AVQGG-------------WRAVPIVAMTAHAMESDR 667

Query: 973 EECFANGMDSFVSKPV 988
             C   GMD +V+KP+
Sbjct: 668 ARCLEAGMDDYVAKPI 683


>gi|332707689|ref|ZP_08427717.1| PAS domain S-box protein [Moorea producens 3L]
 gi|332353598|gb|EGJ33110.1| PAS domain S-box protein [Moorea producens 3L]
          Length = 656

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 230/503 (45%), Gaps = 100/503 (19%)

Query: 192 LMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVM---GHQDKELRYRFIY 248
           L +  N   + L K    +E+ +  L++++     +L   P +M    H    L Y+   
Sbjct: 214 LADSFNRMTSRLRKLIESLEQQTADLRQSEGKNRALLNAIPDLMLHFSHDGTFLDYKVAR 273

Query: 249 NHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREV---LEKGLPAKREITFETELFGSKT 305
           N       + +LGKT   ++    ++ +Q + R V   LE G         ET++F  + 
Sbjct: 274 NQNSFGSFDQVLGKT---VYDALPLEIAQLYIRNVQQALETG---------ETQIFEHER 321

Query: 306 FL----IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTI 361
           F+     + E     SG+   V  +  D+T+      K+A    +I +Q+AKE       
Sbjct: 322 FINGQRRHFEARIVVSGDK-EVLTIVRDITEN-----KLA----QIELQQAKEA------ 365

Query: 362 HITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGV---------M 411
              EE   AK   +A+MSHE+R+PL G++ ++++L       E  + LG          +
Sbjct: 366 --AEEANHAKSAFMASMSHELRTPLNGILGLSQLL------WEDAEELGYDEFVSDLKEI 417

Query: 412 ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILM------ 465
            +SG  +L LI+D+LD+SK+E+G M L    F    ++  +      SL K LM      
Sbjct: 418 WNSGTHLLTLISDVLDISKIEAGKMNLYLESFDVTTLIVEL-----ESLAKPLMQKKNNS 472

Query: 466 LEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQK 525
           L+   AD +   ++ D  +++Q+L NL+SNA KFT  G +   +             K++
Sbjct: 473 LKISSADSLG-TMVADRTKLKQVLLNLLSNAAKFTETGTITFSI-------------KRE 518

Query: 526 SKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDED 585
              + +  + +  E  QP S+++S                +   D P +  +  N     
Sbjct: 519 GSNHSNGKNELILELSQPYSRSSS--------------ASYTTIDIPTSSNTLAN----- 559

Query: 586 LEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
           LE+  W+   V DTGIG+    L  +F+ + Q      +KYGGTGLGL+I ++  ++MG 
Sbjct: 560 LESDHWLIFSVADTGIGMTPEQLNKVFQPFTQADNSTTKKYGGTGLGLSISQRFCQMMGC 619

Query: 646 RLTVTSKVHCGSTFTFILPYQVS 668
           ++TV S++  GSTF+   P  V+
Sbjct: 620 QITVESQIGVGSTFSIRCPAIVN 642


>gi|384081839|ref|ZP_09993014.1| Hpt sensor hybrid histidine kinase [gamma proteobacterium HIMB30]
          Length = 733

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 177/409 (43%), Gaps = 62/409 (15%)

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
            IR  V DTGIG+ E  + TLF K+ Q      R++GGTGLG+AI K LVE   G++ V+
Sbjct: 371 LIRISVIDTGIGMDEEGVKTLFEKFSQADTSITRRFGGTGLGMAIVKNLVEAFNGKIDVS 430

Query: 651 SKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFS 710
           S +  G+T +  L  Q                + DQD+       G  Q   +    +  
Sbjct: 431 SVLGQGTTTSIELKLQC---------------IEDQDASQSTGANGELQIAGK---CILV 472

Query: 711 SNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE 770
            +    ++ ++   +  A A  V     T      N+ + +   L+       V   L+ 
Sbjct: 473 VDDIELNRTIIKRPLLRAGATVVEAVGATEALEEINDLESKKVHLD------LVITDLNM 526

Query: 771 PE-SSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQK 829
           PE S      E        R K+  V       +  T+     +  R + +  K +  + 
Sbjct: 527 PELSGLDLCRE-------IRNKKITVPIIMLSSSGLTDEMKALDVTRMLSKPVKEDRLKS 579

Query: 830 ICEMQEKPDRISQSPSSSSAEVPETKPK---PKPKILLVEDNKINVMVAKSMMKQLGH-S 885
           +       D  +  P+S SA    T+P+      KIL+ EDN  N +V + ++++LG   
Sbjct: 580 VVSSCMFGDVSNLGPASRSA--GRTEPEGDFAGLKILVAEDNSTNQLVIRKVLQKLGCLD 637

Query: 886 IDVVNNGVEAVHAVQ-CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQ 944
             +VNNG EAV  +Q C +  ++LMD+ MPVM GL+AT +IR                E 
Sbjct: 638 FTIVNNGAEAVEFIQSCDDLSIVLMDIQMPVMSGLEATLMIR----------------EM 681

Query: 945 AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKL 993
             P SG       +P+IA+TANA+    E   + G   +VSKP+   +L
Sbjct: 682 KGPKSG-------LPVIALTANAVEGDKENYLSQGFSGYVSKPLRRAQL 723



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 106/178 (59%), Gaps = 6/178 (3%)

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMA 392
           Q++K E  +KLR+ +A +  K+      I   E+     + LA MSHEIR+PL GV+ +A
Sbjct: 192 QLKKMELESKLRQNLAAELEKQR-----IAAIEQANFKSEFLANMSHEIRTPLNGVIGIA 246

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR-EVVKH 451
           EIL +T L+ EQ      ++ S + +L++INDILD+SK+E+G M  E   F  + E+ K 
Sbjct: 247 EILKDTGLNEEQLGYTETLLGSAENLLRIINDILDVSKIEAGQMTYEEVPFCLKSELAKT 306

Query: 452 VLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
               +  + +K + +  +I  D P +VIGD +RI QIL N+  N++KFT  G V IKL
Sbjct: 307 ADNLSIKAHEKNIEIILEIDPDFPSKVIGDPVRISQILYNIAGNSVKFTETGFVQIKL 364


>gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1431

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/244 (34%), Positives = 128/244 (52%), Gaps = 17/244 (6%)

Query: 270 GAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMD 329
           G  ++   D   E   + LP + E  +  +    KT L+ V  +    G   G   +  D
Sbjct: 684 GTTIEPGFDVFVEKCRRNLPNEHEWAYVCKDGTRKTVLLNVTALREADGRITGYLGIATD 743

Query: 330 VTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVV 389
           +T      +++   +E      A+   + K+           + LA MSHEIR+PL GV+
Sbjct: 744 ITPLKLTAQELVSAKE-----AAEAANVAKS-----------RFLANMSHEIRTPLNGVL 787

Query: 390 SMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449
            M E+L +T L  +Q+ LL  +  SG  +L++INDILD SK+E+G ++LE  +F  R+VV
Sbjct: 788 GMTELLLSTSLSAKQQSLLETVRRSGVALLEVINDILDFSKIEAGKLELEQVEFGLRQVV 847

Query: 450 KHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
           +  ++  A S   K L L   I  DVP  ++GD +R+RQIL NLI NAIKFT +G+V + 
Sbjct: 848 EEAVELFAGSAGNKKLELTYFIPADVPDSLVGDAVRLRQILLNLIGNAIKFTAQGEVTVA 907

Query: 509 LYVV 512
             + 
Sbjct: 908 FALA 911



 Score =  103 bits (256), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 79/162 (48%), Gaps = 21/162 (12%)

Query: 841  SQSPSSSSAEVPET-KPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
            S  P   S E   T +P+   +ILL EDN +N  VA SM++ LG  I +  NG  AV A 
Sbjct: 1138 SAGPVPHSPEFAATPRPRVDARILLAEDNPVNQDVASSMLEMLGCRITIAPNGRAAVEAA 1197

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
                +DLILMD  MP MDG  AT  IR  E T                    +   + +P
Sbjct: 1198 TTGRFDLILMDCQMPEMDGFTATAAIRRQEAT--------------------ATDRRHVP 1237

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            IIA+TANA+      C A GMD +++KP T  +L   L Q+ 
Sbjct: 1238 IIALTANAMEGDRARCLAAGMDDYLTKPFTVAQLYAFLTQWL 1279



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 42/63 (66%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           T+ + C V DTGIGIP+ A   LF  + Q      R++GGTGLGLAI KQLV+LMGG + 
Sbjct: 917 TLTLACRVRDTGIGIPDAAQAQLFTAFTQADGSTTRRFGGTGLGLAIVKQLVQLMGGEVG 976

Query: 649 VTS 651
           + S
Sbjct: 977 LVS 979


>gi|389805974|ref|ZP_10203117.1| two component system sensor-response regulator hybrid protein
           [Rhodanobacter thiooxydans LCS2]
 gi|388446428|gb|EIM02461.1| two component system sensor-response regulator hybrid protein
           [Rhodanobacter thiooxydans LCS2]
          Length = 1198

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 102/148 (68%), Gaps = 6/148 (4%)

Query: 362 HITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQ 420
            + E    AK Q LAT+SHEIR+P+TGV+ MAE+L +T L+R+Q      M  SG ++L+
Sbjct: 828 QLAEAASAAKTQFLATLSHEIRTPMTGVMGMAELLLSTPLNRQQHDYTQAMQRSGGMLLK 887

Query: 421 LINDILDLSKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKI-LMLEGDIADDVPIE 477
           L+ND LDL+++E+G ++LE   F PR++++ V  L+   A  + I  +LE  +ADD+P +
Sbjct: 888 LLNDALDLARIEAGKLELEPVPFEPRQLLEDVAQLEQGLAHAKGIRFVLE--LADDLPAQ 945

Query: 478 VIGDVLRIRQILTNLISNAIKFTPEGKV 505
           ++GD +RI+QIL NL +NA+KFT  G V
Sbjct: 946 LLGDAVRIKQILLNLANNALKFTEHGSV 973



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 26/159 (16%)

Query: 844  PSSSSAEVPETKPKPKPK---ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            P S+ A  P    +P  +   +LLVED+ I   V + ++++ GH++  V NG+ A+  + 
Sbjct: 1054 PLSAPAVAPAPVERPSGRSYRLLLVEDDTIVAAVIRGLLEREGHAVVHVVNGLAALAELA 1113

Query: 901  CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
               +D +L+D+ +P +DG +  RLIR  E  G                        R+PI
Sbjct: 1114 HAQFDAVLLDLDLPGVDGFQVARLIRQREHAG-----------------------PRLPI 1150

Query: 961  IAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            +A+TA   SE   +  A GMD F+ KP++ ++L   L +
Sbjct: 1151 VAVTARQGSEDEAKARAAGMDGFLRKPLSGEQLVAALAR 1189



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 7/88 (7%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            ++  V DTG GIPE +   LF+++ Q  A+  ++  G+GLGLAIC++LV++MGG + + S
Sbjct: 984  LQFSVSDTGPGIPEASQARLFQRFEQ--AESPQRRAGSGLGLAICRELVDMMGGSIELES 1041

Query: 652  KVHCGSTFTFILPYQV-----SPIEENS 674
            ++  GSTF   LP        +P+E  S
Sbjct: 1042 RLGHGSTFRVRLPLSAPAVAPAPVERPS 1069


>gi|452966289|gb|EME71301.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
          Length = 1187

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 147/323 (45%), Gaps = 73/323 (22%)

Query: 363 ITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQL 421
           + EE  +AK + LATMSHEIR+P+ GV++MA +L +  L  EQR++  V+  S   +L +
Sbjct: 522 VAEEASQAKSLFLATMSHEIRTPMNGVLTMAHLLEDMPLPAEQREMARVIRDSATSLLTI 581

Query: 422 INDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGD 481
           INDILD SK+E+G ++LE  +    E+V                           E + D
Sbjct: 582 INDILDFSKIEAGKLQLELVELSVSELV---------------------------EGVAD 614

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKH 541
           +L IR                 + GI L    EP  A   +    +  Q  T+       
Sbjct: 615 LLTIRA---------------QEKGISLITFVEPALADRVVGDPIRLRQIITN------- 652

Query: 542 QPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGI 601
                 A +   F DK    GY                 +MD   E  + +   + DTGI
Sbjct: 653 -----LAGNAIKFTDK----GYVRIS-----------ARAMDPR-ERPLRLEFAITDTGI 691

Query: 602 GIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           G+       LF  +MQ     +R+YGGTGLGL+IC++LV +M G + V S +  GSTF F
Sbjct: 692 GLDAEQQARLFEPFMQADVTISRRYGGTGLGLSICRRLVAMMEGDIGVRSNIGQGSTFWF 751

Query: 662 ILPYQVSPIEENSDDPDDLSDMA 684
            +P +  P+E  ++   DLS +A
Sbjct: 752 QVPLE--PVEAEAEAGPDLSGIA 772



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 81/142 (57%), Gaps = 24/142 (16%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            IL+ EDN  N +V + +M++LG++I+VV NG EA   +Q ++Y L+L D  MP MDG + 
Sbjct: 929  ILVAEDNPTNKVVIRHLMERLGYAIEVVGNGAEAWERMQIRDYGLLLTDCHMPEMDGYEL 988

Query: 922  TRLIRSFE-DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            T+ IR +E +TG+                        +PI+A+TA+AL+ +A  C   GM
Sbjct: 989  TQRIREWEMETGHL-----------------------LPIVALTADALAGTARRCLDCGM 1025

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            ++F++KP+   +L   + +  P
Sbjct: 1026 NAFLAKPIDLAQLDATIRRLLP 1047


>gi|359413616|ref|ZP_09206081.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
 gi|357172500|gb|EHJ00675.1| multi-sensor hybrid histidine kinase [Clostridium sp. DL-VIII]
          Length = 940

 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/251 (31%), Positives = 129/251 (51%), Gaps = 19/251 (7%)

Query: 266 EIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNY 325
           ++F      +  +F  E+ +  +P K+E+  +     ++   I  +P   ++G  + +  
Sbjct: 234 DVFDINTANKLSEFNWELFQSNMPIKKELEIKNWKGENRLLKIKSKPQLDEAGNIMYLIC 293

Query: 326 MGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSP 384
              D+T+Q                 +  ETEL K     E    AK Q +A MSHEIR+P
Sbjct: 294 TANDITEQ-----------------RKAETELYKAKEQAEAANIAKSQFIANMSHEIRTP 336

Query: 385 LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
           + G+    E+L +T L  EQR+ +    S+ D++L ++NDILD SK+E+  + +E  KF 
Sbjct: 337 MNGIFGFLELLQSTDLSTEQREFIREAKSASDILLDIVNDILDFSKIEAKKLTMENIKFN 396

Query: 445 PREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
            R  ++  +   A  +  K + L   I   VP EVIGD  R+RQIL NLISNA+KFT EG
Sbjct: 397 LRTTIEDAVSLIAPKAATKGIELYAMIKSGVPEEVIGDPSRLRQILNNLISNAVKFTTEG 456

Query: 504 KVGIKLYVVPE 514
           ++ + +  + E
Sbjct: 457 EISVSVSYLEE 467



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 23/140 (16%)

Query: 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
           PKILLVEDN++N  +   M+K    + DV  NG +A+ AV  ++YD++ MD  MPVMDG 
Sbjct: 712 PKILLVEDNEVNRKIVIRMLKSRNMTCDVAINGSDALDAVSKKDYDVVFMDCQMPVMDGY 771

Query: 920 KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
           ++T  IR  E                    G   H     IIAMTANA++   E+C   G
Sbjct: 772 ESTARIRHLE--------------------GDKKH---TTIIAMTANAMAGDCEKCIKAG 808

Query: 980 MDSFVSKPVTFQKLKECLEQ 999
           MD+++SKP+ F K+ + +E+
Sbjct: 809 MDAYISKPIDFDKMFKMIEE 828



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 49/77 (63%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +  +V DTGIGI +  +  +F+ + Q  A   RKYGGTGLGLAIC +LV++MGG +   S
Sbjct: 474 LNFEVKDTGIGIRKEDINKIFKSFSQADASTTRKYGGTGLGLAICNELVKMMGGEIWAQS 533

Query: 652 KVHCGSTFTFILPYQVS 668
               GSTF F +  +++
Sbjct: 534 VFGEGSTFKFNVRLKIA 550


>gi|373957347|ref|ZP_09617307.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|373893947|gb|EHQ29844.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1437

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 114/180 (63%), Gaps = 7/180 (3%)

Query: 338  EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILS 396
            E +  L EE+  QK +E          E+  +AK + LATMSHEIR+P+ GV+ MA +L 
Sbjct: 894  ENLHLLNEELNKQKIQEQAARLE---AEKANQAKSVFLATMSHEIRTPMNGVIGMASLLV 950

Query: 397  NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
             T L+ EQR+    +I+ GD ++ +INDILD SK+ESG M +E   F  R  ++ V+   
Sbjct: 951  ETDLNTEQREYAETIITCGDSLVNVINDILDFSKIESGKMDIEHIDFDLRHSIEEVMDLF 1010

Query: 457  A--ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
                +L+ I ++  +I  +VP ++IGD LR++Q+L NLI+NAIKFT +G+V +K+ ++ +
Sbjct: 1011 GPRVALRGIDLIY-EIDYNVPRQIIGDSLRLKQVLINLINNAIKFTEKGEVFVKISLLKQ 1069



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 25/138 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            IL+ EDN IN  + + ++ ++G++I++V NG E +  +  + YD+ILMDV MP MDGL+ 
Sbjct: 1315 ILVAEDNLINQKLIQRILNKMGYTIEIVANGYEVLEQMMLKTYDVILMDVQMPEMDGLET 1374

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T+LIR                            FK+  IIAMTANA+ E  E C + GMD
Sbjct: 1375 TQLIR-------------------------KGKFKQPFIIAMTANAMLEDKEICISAGMD 1409

Query: 982  SFVSKPVTFQKLKECLEQ 999
             +++KP+   +L   L+ 
Sbjct: 1410 DYIAKPMKLDELVALLKH 1427



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 47/73 (64%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIPE  L  LF+ + QV +   RKYGGTGLGL I ++LV+LMG  +   S    
Sbjct: 1081 VTDTGIGIPEEKLSNLFKPFSQVDSSTTRKYGGTGLGLVISERLVKLMGDEIWAESNFGK 1140

Query: 656  GSTFTFILPYQVS 668
            GS F+F +  ++S
Sbjct: 1141 GSVFSFSIKAEIS 1153


>gi|242280564|ref|YP_002992693.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123458|gb|ACS81154.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 1006

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 154/312 (49%), Gaps = 48/312 (15%)

Query: 243 RYRFIYNHFPSLHEEDILGKTD-----VEIFSGA----GVKESQDFKREVLEKGLPAKRE 293
           +Y+F +++      +D++  TD     + + SG     G    +  K+ V E   P +RE
Sbjct: 340 QYQFFFDNV-----DDLVCITDMDGLFIRVNSGGADFLGYGRDEFLKKTVFELVPPYERE 394

Query: 294 IT--FETELFGSKTFLIYVEPVFSKSGETI-------GVNYMGMDV--------TDQVRK 336
                   LF     L +  P  +KSGE +        + Y G DV        TD+ R 
Sbjct: 395 SLRGLMNSLFAGNNSLQFECPAVAKSGEIVYTDVRSRRITYHGQDVLLSVVRDVTDRKRD 454

Query: 337 REKMAKLREEIAVQKAKETELNKTIHIT------EETM-RAK-------QMLATMSHEIR 382
            E++     E+   KAKE E   + H+       EE M RA+       + LA MSHEIR
Sbjct: 455 EEELQHYAAELL--KAKEIEERNSAHMADTLKKLEEAMTRAEVANRTKSEFLAQMSHEIR 512

Query: 383 SPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAK 442
           +P+  ++ MA++L++T+L  EQR  + +   SG  +L LI+DILDLSK+ESG + LE  K
Sbjct: 513 TPMNSILGMADMLTDTRLTSEQRNYVSIFRDSGKALLNLIDDILDLSKIESGKLTLEHTK 572

Query: 443 FRPREVVKHVLQTAAAS-LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTP 501
           F   ++V  V    + S  +K L+    +    P    GD  RI+QIL NL+SNAIKFT 
Sbjct: 573 FNIDDLVDEVAGIMSVSAWKKNLIFACHVDPYCPSFFEGDPTRIKQILVNLLSNAIKFTD 632

Query: 502 EGKVGIKLYVVP 513
            G V +++   P
Sbjct: 633 SGSVVLEISSSP 644



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 75/145 (51%), Gaps = 22/145 (15%)

Query: 845 SSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
           SS  AE  E   + KP +IL+VED++ N M+    +K     +    NG EAV+  +  N
Sbjct: 869 SSIDAESREETVELKPLRILVVEDSENNRMLLGFFLKDTPFRLRYATNGNEAVNMYRENN 928

Query: 904 YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
           +DL+LMD+ MP  DGL ATR IR++E    W+                 N +   PI+A+
Sbjct: 929 FDLVLMDIQMPGKDGLDATREIRAYE----WE-----------------NGYPATPIVAL 967

Query: 964 TANALSESAEECFANGMDSFVSKPV 988
           TANA  E  ++C   G   F+ KP+
Sbjct: 968 TANAREEDRKDCHKAGCSGFLPKPI 992



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGI E     +F  ++Q  +   RKYGGTGLGL+I + LVELM G + V +    
Sbjct: 656 VRDSGIGISEEKFKDIFENFVQADSSTTRKYGGTGLGLSITRNLVELMNGHIDVRNVSSG 715

Query: 656 GSTF-TFILPYQVSPIEENS 674
           G+ F T I    +  IEE+S
Sbjct: 716 GAEFRTDIELGSIDEIEEDS 735


>gi|428170247|gb|EKX39174.1| hypothetical protein GUITHDRAFT_165051 [Guillardia theta CCMP2712]
          Length = 2317

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 119/414 (28%), Positives = 176/414 (42%), Gaps = 94/414 (22%)

Query: 257  EDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKT----FLIYVEP 312
            +++ G+  VE++  A  + S    R VL+  L  +    FE  +F         L+    
Sbjct: 1224 KEVFGRDLVEVYITAEFRNS---VRNVLQNALKGREAANFEFPIFTKDNRRVELLLNATT 1280

Query: 313  VFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ 372
                SG  IGV  +G D+TD  +  E+   L +  A   AK                  Q
Sbjct: 1281 RRDMSGAIIGVIGVGQDITDMRKLMEQETLLFQAQAANDAK-----------------SQ 1323

Query: 373  MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
             LATMSHE+R+PL  ++ M+++L +T L  EQR+     ++S + +L LINDILDL+   
Sbjct: 1324 FLATMSHEMRTPLNVIMGMSQMLLDTNLSIEQRRFAEQTMNSSESLLILINDILDLT--- 1380

Query: 433  SGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNL 492
                K+EA K          L +    L+++L    D  D +  + +   L I   L  +
Sbjct: 1381 ----KIEAGKLE--------LTSVEFDLRQVL---EDAIDSIASKALVKGLEICLYLDPM 1425

Query: 493  ISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQN 552
            +   +K  P+    I L ++                    ++A+K   HQ          
Sbjct: 1426 LHTGVKGDPDRLRQILLNLL--------------------SNAIKF-THQ---------- 1454

Query: 553  GFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLF 612
                   G+ Y   + DD      SH           V  R  VYD+GIGI E     LF
Sbjct: 1455 -------GQVYLLVEADD---LSCSH-----------VTFRFKVYDSGIGISEEGQKKLF 1493

Query: 613  RKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
             ++ QV +   R YGGTGLGLAI KQ  ELM G + V+S +  GS F F   +Q
Sbjct: 1494 NRFSQVDSSTTRSYGGTGLGLAISKQFAELMNGSMGVSSSMGQGSLFWFTATFQ 1547



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 35/171 (20%)

Query: 842  QSPSSSSAEVPETKPKPKP------------KILLVEDNKINVMVAKSMMKQLGHSIDVV 889
            Q+PSS+     +++   +P            +IL+VED+  N  + ++M+ +LGH ++ V
Sbjct: 2162 QAPSSAQQAREDSQQPDEPQVVEGGRAPGQMRILIVEDHWANRRLLEAMLIKLGHRMEAV 2221

Query: 890  NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSS 949
             NG+EAV+    + YD+ILMD  MP+MDG +AT  IR  + TG              P+ 
Sbjct: 2222 ENGLEAVNITSSRLYDVILMDCNMPIMDGWQATENIR--QRTG--------------PN- 2264

Query: 950  GSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                  ++ PIIA+TANA+    E+C A+GMD +++KPV  +KL++ L ++
Sbjct: 2265 ------QKTPIIAVTANAMKGDREKCLASGMDDYITKPVERKKLEDVLGRW 2309



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 74/141 (52%), Gaps = 20/141 (14%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+V+D+    M+ KSM+K+ G+ ++   +G +AVHA+    YD++LMD  MP + G +
Sbjct: 1902 RVLVVDDDHGQRMLLKSMLKKAGYDVEEAQDGADAVHAISTIEYDVVLMDGFMPKLTGWE 1961

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT  IR+ E  G                 G++   + + II +T  A S+   + +A GM
Sbjct: 1962 ATAQIRANEAAG-----------------GAT---RPLTIIGITGAAASDDTAKFWAAGM 2001

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
               +SKPV   +L   + ++ 
Sbjct: 2002 TDLISKPVRKDQLLAVVNKWM 2022


>gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1545

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 162/318 (50%), Gaps = 42/318 (13%)

Query: 200  VTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHE 256
            +T+++ +   +EE      R +     ++ N PV +  +  +LR  ++   +       +
Sbjct: 842  ITDVKARERALEES----MRENEVFRSLIDNVPVSIYAKRSDLRQFYVNKGWCDLTGFSK 897

Query: 257  EDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSK 316
            E+ +GKTD+EIF   G +   +    VL  G   + E T  T   GS      V   F++
Sbjct: 898  EEAIGKTDIEIFGPDG-EAFVNGDLAVLRTGETQEVEETV-TLADGS------VRHQFAR 949

Query: 317  SGETI---GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM 373
             G  I   G  Y+    TD    + + A+LRE  A Q+A   +  K+           + 
Sbjct: 950  KGAMIASDGSLYLIGSTTDITELKMREAELRE--ARQRAVLADRAKS-----------EF 996

Query: 374  LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433
            LA MSHEIR+P+ GV+ MAE+L+ + LD +Q+    +++ SG+ +L +INDILD SK+++
Sbjct: 997  LANMSHEIRTPMNGVLGMAELLAKSDLDPKQKTFTDIIVKSGNALLTIINDILDFSKIDA 1056

Query: 434  GVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIE------VIGDVLRIRQ 487
            G + L+ A F   E ++ V     A+L      E D+   V +E       IGDV RIRQ
Sbjct: 1057 GQLVLDPAPFNLAEAIEDV-----ATLVSTRAKEKDLELIVRVEPRLESLFIGDVGRIRQ 1111

Query: 488  ILTNLISNAIKFTPEGKV 505
            I+TNL+ NA+KFT EG V
Sbjct: 1112 IVTNLLGNAVKFTDEGHV 1129



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 31/167 (18%)

Query: 843  SPSSSSA--EVPETKPKP-------KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV 893
            +PS   A  + P  +P+P       +  IL+ EDN++N MV   ++ + G+  ++V NG 
Sbjct: 1389 APSEQRALLQPPSIRPRPPVAAGGDRLDILVAEDNEVNQMVFTQILGETGYGFEIVGNGR 1448

Query: 894  EAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
            +A+ A    N  +ILMDV MP M+GL+AT  IR  E+        E G            
Sbjct: 1449 KALDAFGRLNPCMILMDVSMPEMNGLEATAAIRRLEE--------ETGTH---------- 1490

Query: 954  HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                +PI+ +TA+AL    E C   GMD ++ KP++ + L E +E++
Sbjct: 1491 ----VPIVGVTAHALKGDRERCLEAGMDDYLPKPISPRALLEKVERW 1533



 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 43/66 (65%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIPE  L  +F K+ QV     R++ GTGLGLAI  +LVELMGG + V S    
Sbjct: 1148 VTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGDIGVESAEGK 1207

Query: 656  GSTFTF 661
            GSTF F
Sbjct: 1208 GSTFWF 1213


>gi|85111598|ref|XP_964013.1| hypothetical protein NCU02057 [Neurospora crassa OR74A]
 gi|28925771|gb|EAA34777.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1319

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 172/363 (47%), Gaps = 78/363 (21%)

Query: 307 LIYVEPVFSKSGETIGVNYMG--MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT 364
           ++  +P+   S E      MG  MDVT +++ RE+      +I  Q  ++ +L       
Sbjct: 669 ILRRDPLTGNSTEDFIEGVMGFIMDVT-ELKDRER------DIEAQALEKRQLLANEAAA 721

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           +E  R K Q LA MSHEIR+P+TGV+ MAE+L + +LD EQR+L   +  S + +L +IN
Sbjct: 722 KEASRLKSQFLANMSHEIRTPITGVIGMAELLLDVELDAEQRELTENIFRSANALLTVIN 781

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVL 483
           DILD S       K+E+ +    EV     Q + A               V I+ +G +L
Sbjct: 782 DILDFS-------KIESGRLDIEEV-----QFSLA---------------VVIQEVGKML 814

Query: 484 RIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQP 543
                  +L   A  +     +GI L V+ +P   ++ +         AT+++K      
Sbjct: 815 SFTAERKSL---AFNYEICSDIGIDLVVMGDPGRVRQIITNL------ATNSIK------ 859

Query: 544 KSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGI 603
                     F  + H                V    S++++ + T+ ++  + DTGIGI
Sbjct: 860 ----------FTHEGH----------------VKLHVSVEQETDDTIEVKFVIQDTGIGI 893

Query: 604 PENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
            E  L  LF+ + Q     ARK+GGTGLGL I K L+ELM GR+ + SK   G+T TF +
Sbjct: 894 EEEVLKRLFQPFSQGDPSTARKFGGTGLGLTISKNLLELMKGRMALASKKDEGTTATFWI 953

Query: 664 PYQ 666
           P++
Sbjct: 954 PFK 956



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 26/145 (17%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV------QCQNYDLILMDVCMPV 915
            IL+VEDN+IN  +A   +++LG  +    NG EA+  +      + +  D+ILMDV MP+
Sbjct: 1027 ILVVEDNEINQQIAIRTIRKLGFQVAAAWNGKEALEYLSKASTGKTRKPDIILMDVQMPL 1086

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            +DG   T L+R                      +   ++ + +PI+AMTA+A+    E+C
Sbjct: 1087 IDGYLCTHLLRHH--------------------APYRSYVRDVPIVAMTASAIQGDKEKC 1126

Query: 976  FANGMDSFVSKPVTFQKLKECLEQY 1000
               GMD ++SKPV    L+  L ++
Sbjct: 1127 KRAGMDDYLSKPVKRTTLERMLLRW 1151


>gi|87303321|ref|ZP_01086114.1| PAS protein [Synechococcus sp. WH 5701]
 gi|87282216|gb|EAQ74177.1| PAS protein [Synechococcus sp. WH 5701]
          Length = 549

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/193 (38%), Positives = 119/193 (61%), Gaps = 5/193 (2%)

Query: 325 YMGMDVTDQVRKREKMAKLREEI---AVQKAKETELNKTIHITEETMRAKQMLATMSHEI 381
           ++  D+T+  R ++++ K R+ +      +  E +L +       T    Q L+T+SHEI
Sbjct: 107 FVFRDLTEITRAQDQITKARDTLEQDVAARTLELQLARD-EALAATGAMGQFLSTISHEI 165

Query: 382 RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
           R+PL  V+ M+++L +T LD +Q++L+  + SS +L+L+LINDILDLSK+E+  MK+ + 
Sbjct: 166 RTPLNAVIGMSDLLLDTSLDGQQQELVHTINSSAELLLRLINDILDLSKIEARKMKISSE 225

Query: 442 KFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFT 500
            F  R +V    +   A+++ K L L    +DD P  +IGD LRIRQI+ NL++NAIKFT
Sbjct: 226 TFSLRSLVLDCCRMMDAAVRAKRLELRCSFSDDPPDALIGDGLRIRQIVLNLLNNAIKFT 285

Query: 501 PEGKVGIKLYVVP 513
             G V +K+   P
Sbjct: 286 SHGSVDVKIGWRP 298



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 31/144 (21%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L VEDN+IN  V + ++ +L    +  + G +AV  +    ++L+LMD+ MP +DGL+
Sbjct: 405  RLLAVEDNRINQRVLELLLAKLSLQAEFADCGEDAVERLGQGGFNLVLMDLQMPGIDGLE 464

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP---IIAMTANALSESAEECFA 977
            ATR +R                  A+P          IP   ++A+TA A  +  +EC A
Sbjct: 465  ATRQLR------------------ALP----------IPQPYVVALTAFAFEDQQQECLA 496

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             GM  F++KPV    L+ CL+++ 
Sbjct: 497  AGMQDFLTKPVRVPALQGCLQRFL 520



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 596 VYDTGIGIPENALPTLFRKYMQV-SADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           V DTG GI E+ L  +F+ + Q  +  HA  + GTGLGLAIC +L  LMGG +   S++ 
Sbjct: 310 VADTGTGISEDFLSKIFQDFTQEHNQAHASHHHGTGLGLAICDRLCRLMGGSIEAVSQLG 369

Query: 655 CGSTFTFILPYQVS 668
            GS F   LP + S
Sbjct: 370 QGSRFHVRLPLKRS 383


>gi|262403062|ref|ZP_06079622.1| hypothetical protein VOA_001043 [Vibrio sp. RC586]
 gi|262350561|gb|EEY99694.1| hypothetical protein VOA_001043 [Vibrio sp. RC586]
          Length = 1045

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 159/354 (44%), Gaps = 74/354 (20%)

Query: 341 AKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTK 399
           A    ++ V+KA E ELN+     EE +  K M LA MSHEIR+P+  ++ M+ +   T+
Sbjct: 268 AMFLRDVTVRKAVEQELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALKTE 327

Query: 400 LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAAS 459
           L  +QR  +  + SS  L+L +INDILD SK+E+G + +E  +F   EV           
Sbjct: 328 LSAKQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIERIEFSLDEV----------- 376

Query: 460 LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAK 519
           L  + M+ G  A D  +E++  +   R+I   LI + ++    G+V I L          
Sbjct: 377 LHNVSMVTGQKAFDKGLELLFSL--PREIPRKLIGDPLRI---GQVVINL--------VN 423

Query: 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHG 579
             +K   +   S    V E       QT   Q  FH                        
Sbjct: 424 NAVKFTEQGEISVNVQVGER------QTGRIQLQFH------------------------ 453

Query: 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
                           V DTGIG+ E     LF+ + Q      RKYGGTGLGL+I ++L
Sbjct: 454 ----------------VMDTGIGMTEKQTRHLFQAFTQADGSTTRKYGGTGLGLSISRRL 497

Query: 640 VELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSD-MADQDSVTDD 692
           VELM G ++V S+   GS FTF   + V   EE S  P  + D +AD  ++  D
Sbjct: 498 VELMEGEISVISQPEEGSCFTFTAWFDVD--EEQSTPPRVVPDVLADIRALIVD 549



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 29/133 (21%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV----HAVQCQN-YDLILMDVCMPV 915
           ++LL EDN+IN  +A  +M+     +   NNG EA+    H+++ Q  +D+I MD+ MPV
Sbjct: 691 RVLLTEDNEINQQIALELMEAKELLVTTANNGKEALEHLAHSLETQQRFDIIFMDLQMPV 750

Query: 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
           MDG +ATR IRS  +  +                         P+IAMTA+A+ E  E C
Sbjct: 751 MDGYEATRHIRSIPEHND------------------------TPLIAMTAHAMVEERERC 786

Query: 976 FANGMDSFVSKPV 988
              GM+  VSKP+
Sbjct: 787 LGIGMNDHVSKPI 799



 Score = 40.8 bits (94), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 11/84 (13%)

Query: 854 TKPKPKPKIL------LVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ-----CQ 902
           T P+  P +L      +V+DN     + + M+  L    +   NG+EA+H ++      +
Sbjct: 531 TPPRVVPDVLADIRALIVDDNDHAREILQDMLLILDIPPETAANGLEALHKLEQGIENGK 590

Query: 903 NYDLILMDVCMPVMDGLKATRLIR 926
            ++L+ MD  MP M+G++ATR IR
Sbjct: 591 PFNLVFMDWNMPEMNGIEATRAIR 614


>gi|378763933|ref|YP_005192549.1| putative two-component hybrid sensor and regulator [Sinorhizobium
           fredii HH103]
 gi|365183561|emb|CCF00410.1| putative two-component hybrid sensor and regulator [Sinorhizobium
           fredii HH103]
          Length = 989

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 110/179 (61%), Gaps = 2/179 (1%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           ++ AKL +     +    EL +   + E+   AK + LA MSHEIR+P+ GV+ +AE+L 
Sbjct: 313 KRTAKLEQRTEQLRKSREELERARDVAEQASIAKSEFLANMSHEIRTPMNGVIGIAELLE 372

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            T+L  +QR+ + +++ S + ++ LINDILD SK+E+G ++LE   F  R+ +   LQT 
Sbjct: 373 GTELSEQQRRYVSIILHSAETLMDLINDILDFSKIEAGRLELETIPFMLRDTLGDTLQTL 432

Query: 457 AA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
           A  +  K L L   I  +VP  ++GD  R+RQI+ NL+ NAIKFT  G+V + + +V E
Sbjct: 433 AKRAADKGLELACHIPPEVPDHLMGDPTRLRQIIVNLVGNAIKFTENGEVVVDVTLVGE 491



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 74/141 (52%), Gaps = 22/141 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +LL ED  +N  VA  ++ + GH ++ V NG EAV A +  +YDL+LMDV MPVMDGL A
Sbjct: 737  VLLAEDGAVNRQVAVDLLTKRGHRVEAVGNGQEAVEAAEHGSYDLVLMDVHMPVMDGLAA 796

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T                      A   + +     R+PIIA+TA+A     E C A GMD
Sbjct: 797  T----------------------AAIRALARAECARLPIIALTASATPADRERCLAAGMD 834

Query: 982  SFVSKPVTFQKLKECLEQYFP 1002
             +V+KP    +L   +EQY P
Sbjct: 835  GYVTKPFRASELFRVVEQYQP 855



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 46/78 (58%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           ++ DV DTGIGIP      +F  + Q      R+YGGTGLGLAI  QL E MGG + + S
Sbjct: 498 LQFDVRDTGIGIPAAQQERIFEAFAQADTSTTRQYGGTGLGLAIAAQLAEKMGGPMQLDS 557

Query: 652 KVHCGSTFTFILPYQVSP 669
           K   GS FTF   + ++P
Sbjct: 558 KPGVGSVFTFAADFVLAP 575


>gi|424922532|ref|ZP_18345893.1| Signal transduction histidine kinase [Pseudomonas fluorescens R124]
 gi|404303692|gb|EJZ57654.1| Signal transduction histidine kinase [Pseudomonas fluorescens R124]
          Length = 937

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ ++  E  L +     +    AK + LATMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 429 DISARRQIEAALEQARQSADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTQLDTQQ 488

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
           +  L  +  S   +LQLI D+LD+SK+E+G + LE ++FRP  +V  V+Q  AA+ Q K 
Sbjct: 489 KSYLQAIEGSSATLLQLICDVLDVSKIEAGQLALELSEFRPTTLVHEVVQGYAAAAQSKG 548

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L L   +    P  +IGD  R+RQIL NL+SNA+KFT  G+V +++ ++
Sbjct: 549 LQLYACLDPQTPERLIGDASRVRQILNNLLSNAVKFTDSGRVVLRVKLL 597



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 31/155 (20%)

Query: 840 ISQSPSSSSAEVPET----KPKP-KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
           + Q+     A +PE     + +P +  IL+ EDN IN ++ +  +++LG ++ + ++G E
Sbjct: 790 VRQAQGGQIAPLPEQHEPHRLRPLRLHILVAEDNAINQLILRDQLEELGCTVALASDGEE 849

Query: 895 AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
           A+   +   +D++L DV MP ++G + T  +R             AG             
Sbjct: 850 ALSLWRGSEFDIVLTDVNMPRLNGYELTAALR------------RAGCV----------- 886

Query: 955 FKRIPIIAMTANALSESAEECFANGMDSFVSKPVT 989
               PII  TANAL      C A GM+  + KP T
Sbjct: 887 ---TPIIGATANALRGEDALCLAAGMNHCLVKPFT 918



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 571 DPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
           D G  V     +D + E  V ++  V DTG GI  +    +F  + Q   +      GTG
Sbjct: 586 DSGRVVLRVKLLDREGE-RVCLQWQVSDTGKGIAHDDQAFIFEPFYQTEGN-TNVVAGTG 643

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
           LGL IC++L  LM G L + S+   GS+F   +P +
Sbjct: 644 LGLPICQRLTHLMNGTLRMVSEPGLGSSFALSVPLE 679


>gi|440227494|ref|YP_007334585.1| two component sensor kinase/response regulator hybrid [Rhizobium
           tropici CIAT 899]
 gi|440039005|gb|AGB72039.1| two component sensor kinase/response regulator hybrid [Rhizobium
           tropici CIAT 899]
          Length = 935

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/190 (38%), Positives = 111/190 (58%), Gaps = 4/190 (2%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
           G  +M +D      +R  +A    ++   K +E +L   +  +    RAK + L  MSHE
Sbjct: 345 GDRWMQLDAALGEHRRWTVAL--TDVTEMKEREADLQLLLARSNAADRAKSEFLTHMSHE 402

Query: 381 IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
           IR+P+ GV+ MAE+L  T LD  Q+  + +++ SG+ +L +INDILD S++++G M L  
Sbjct: 403 IRTPMNGVLGMAELLGKTDLDIRQKTFVDIIVKSGNALLTIINDILDFSRIDTGEMHLRK 462

Query: 441 AKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKF 499
             F P E V+ +    AAA+ +K + L   IA  VP  ++GD  R RQI+TNL+ NAIKF
Sbjct: 463 MAFDPAEAVEDIATLLAAAASEKNIELIARIAPGVPAAILGDAGRFRQIVTNLVGNAIKF 522

Query: 500 TPEGKVGIKL 509
           T  G V ++L
Sbjct: 523 TERGHVLVEL 532



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 20/140 (14%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN++N +V   +++  G    VV NG  AV A +     LILMDV MPVM+G +A
Sbjct: 804  VLVAEDNEVNQIVFTQILQATGLRFLVVENGQAAVDAWRQLRPSLILMDVSMPVMNGHQA 863

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR FE                   +G   H   +PI+ +TA AL      C  +GMD
Sbjct: 864  TRTIRQFE-----------------TQAGQGWH---VPIVGVTAQALDVDRVMCMQSGMD 903

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
              +SKP++ + L+  + +Y 
Sbjct: 904  DCISKPISPELLETKIRRYL 923



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 44/69 (63%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIPE  L T+F K+    +  AR+  G+GLGLAI   LV+L GG L+V SK   
Sbjct: 548 VEDTGIGIPEEKLDTIFDKFSLADSSFARRLEGSGLGLAITAGLVDLFGGSLSVESKWGK 607

Query: 656 GSTFTFILP 664
           GS FT  LP
Sbjct: 608 GSVFTVHLP 616


>gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234]
 gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234]
          Length = 989

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 112/179 (62%), Gaps = 10/179 (5%)

Query: 335 RKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEI 394
           R+ E++ K REE+  ++A++     +I  +E        LA MSHEIR+P+ GV+ +AE+
Sbjct: 320 RRTEQLRKSREEL--ERARDAAEQASIAKSE-------FLANMSHEIRTPMNGVIGIAEL 370

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
           L  T+L  +QR+ + +++ S D ++ LINDILD SK+E+G ++LE   F  R+ +   LQ
Sbjct: 371 LEGTELSEQQRRYVSIILHSADTLMDLINDILDFSKIEAGRLELETIPFVLRDTLGDTLQ 430

Query: 455 TAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           T A  +  K L L   I  +VP  ++GD  R+RQI+ NL+ NAIKFT  G+V + + +V
Sbjct: 431 TLAKRAADKGLELACHIPPEVPDHLMGDPTRLRQIIVNLVGNAIKFTENGEVVVDVTLV 489



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 77/146 (52%), Gaps = 22/146 (15%)

Query: 855  KPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMP 914
            +  P   +LL ED  +N  VA  ++ + GH +  V NG EAV AV+   YDL+LMDV MP
Sbjct: 730  RTSPGLTVLLAEDGAVNRQVAVDLLTKRGHRVVAVGNGQEAVEAVERGGYDLVLMDVHMP 789

Query: 915  VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE 974
            VMDGL AT  IR+                   P S       R+PI+A+TA+A +   E 
Sbjct: 790  VMDGLAATAAIRAL----------------IRPESA------RVPIVALTASATAADRER 827

Query: 975  CFANGMDSFVSKPVTFQKLKECLEQY 1000
            C A GMD +V+KP    +L   +EQY
Sbjct: 828  CVAAGMDGYVTKPFRATELFHVVEQY 853



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           ++ +V DTGIGIPE     +F  + Q  A   R+YGGTGLGLAI  QL E MGGR+ + S
Sbjct: 498 LQFEVRDTGIGIPEAQQERIFEAFAQADASTTRQYGGTGLGLAIAAQLAEKMGGRMQLDS 557

Query: 652 KVHCGSTFTFILPYQVSPIEENSDDP 677
           K   GS FTF   + ++P EE    P
Sbjct: 558 KPGVGSVFTFAADFGLAP-EEGKARP 582


>gi|443478497|ref|ZP_21068244.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
 gi|443016212|gb|ELS30924.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
          Length = 988

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 6/227 (2%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILS 396
           +K+ ++  +I  +K  E  L +     E   RAK   LA MSHEIR+P+ GV+ MAE+L+
Sbjct: 549 DKVIQVARDITERKQAEITLAEAKEAAEALTRAKSDFLANMSHEIRTPMNGVIGMAELLA 608

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK---HVL 453
           +T L  +Q   +  +  SG+++L +INDILD SK+E+G ++LE   F  ++ VK   ++L
Sbjct: 609 STPLTGDQLDYVQTIQDSGNILLAVINDILDFSKIEAGKLELEERPFLLKDAVKSAFNIL 668

Query: 454 QTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
            T AA+   I  L+  IA DVP  ++GD  R+ QIL NLI NAIKFT +G+V + +  + 
Sbjct: 669 STEAANQANI--LKYAIATDVPATIVGDQARVHQILINLIGNAIKFTQKGEVELLVKCIR 726

Query: 514 EPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHG 560
            P  + + L Q   + +     +  ++     Q  S  +    +K+G
Sbjct: 727 SPQSSNQILNQILFSIKDTGIGISSDRLSRLFQPFSQADASISRKYG 773



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 77/139 (55%), Gaps = 23/139 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           KIL+VEDN++N  +A   +K+ G+  D+ NNGVEA+  V  QNYDL+ MD+ MP MDGL 
Sbjct: 860 KILIVEDNEVNQKIASLYLKRFGYIADIANNGVEALEMVYQQNYDLLFMDMQMPEMDGLT 919

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATRLIR                         SN   +  I+AMTAN ++E  + C A GM
Sbjct: 920 ATRLIRQ-----------------------DSNIPLQPQIVAMTANVMAEDIQNCLAVGM 956

Query: 981 DSFVSKPVTFQKLKECLEQ 999
           +  + KP+  +++   L +
Sbjct: 957 NDHIGKPIRVEEIARTLNR 975



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 42/61 (68%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   + DTGIGI  + L  LF+ + Q  A  +RKYGGTGLGLAICK LV+ MGG++ V S
Sbjct: 738 ILFSIKDTGIGISSDRLSRLFQPFSQADASISRKYGGTGLGLAICKYLVKFMGGKIWVDS 797

Query: 652 K 652
           K
Sbjct: 798 K 798


>gi|317154349|ref|YP_004122397.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944600|gb|ADU63651.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1100

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 121/218 (55%), Gaps = 14/218 (6%)

Query: 350 QKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
           +K    +L K   I E   RAK + LA MSHEIR+PL G+  M +++  TKLD EQR  +
Sbjct: 704 RKISAQQLVKAKEIAESANRAKSEFLANMSHEIRTPLNGIFGMLQLVGGTKLDDEQRDYV 763

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ---TAAASLQKILM 465
              ++SG  +L++IND+LD SK+E+G++ +E+     R VV  VL+     AA  Q ++ 
Sbjct: 764 DTALTSGRSLLRVINDVLDFSKMEAGMLTVESEPLDIRHVVADVLENFSVQAAEKQLVMA 823

Query: 466 LEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQK 525
           +E D +  VP  ++ D  RIRQIL NL+ NA+KFTP G++ ++ +V        +   Q 
Sbjct: 824 VETDAS--VPPLILSDEARIRQILFNLVGNAVKFTPSGRITVESWVQ-----RADTTDQT 876

Query: 526 SKAYQSATD---AVKEEKHQPKSQTASDQNGFHDKKHG 560
            + + S +D    + E          S  +G H +K+G
Sbjct: 877 MRLFLSVSDTGIGIPENMLGSVFSAFSQVDGSHTRKYG 914



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 21/141 (14%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +LLVED  +N +    ++++LGH++    +G +A+  V+   +D++LMD+ MP MDG+ A
Sbjct: 976  VLLVEDEPVNRISVLRLLEKLGHAVVTAEDGFQALERVRSGTFDIVLMDIQMPGMDGMAA 1035

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TRLIR  +  GN          +A+           +PIIA+TA+A+    E+    GMD
Sbjct: 1036 TRLIRDDDSLGN----------KAL-----------VPIIALTAHAMKGDREKFLDAGMD 1074

Query: 982  SFVSKPVTFQKLKECLEQYFP 1002
             +++KPV F  L   L    P
Sbjct: 1075 DYLAKPVDFTDLVRVLSGLVP 1095



 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIPEN L ++F  + QV   H RKYGGTGLGL I K+LV+LMGG + V S    
Sbjct: 883 VSDTGIGIPENMLGSVFSAFSQVDGSHTRKYGGTGLGLGIVKRLVDLMGGEIYVESDGEG 942

Query: 656 GSTFTFILPYQVSPIEENSDDPDDLS 681
                F+   + S  E +  D D LS
Sbjct: 943 TRIHLFLKVREAS--ENDHVDADTLS 966


>gi|428310298|ref|YP_007121275.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
 gi|428251910|gb|AFZ17869.1| PAS domain S-box [Microcoleus sp. PCC 7113]
          Length = 1550

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 165/326 (50%), Gaps = 32/326 (9%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ---RQLLGVMISSGDLVLQLINDILDL 428
            + ++ +SHE+R+PLT +     +LS+  +D      R+++ +   S + +++L+NDIL+L
Sbjct: 1242 EFISVVSHELRTPLTSIHGALNLLSSGLVDTHSEKGRRVIDIAAQSAERLVRLVNDILEL 1301

Query: 429  SKVESGVMKL-----EAAKF--RPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGD 481
             ++ESG + L     + A+   +  E+++ +   A  +L          A    + +  D
Sbjct: 1302 ERLESGKISLLKQTCDVAELMIKATEMIQVMANRAGVTLSVSANTISPEASAKALALYAD 1361

Query: 482  VLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKH 541
              RI Q+LTNL+ NAIKF+P G   + L V  + P  +E             D   +  H
Sbjct: 1362 PDRIIQVLTNLLGNAIKFSPRGST-VWLTVELQEPEEREN-------NSMLLDPALQLSH 1413

Query: 542  QPKSQTASDQNGFHDKKH----GEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVY 597
            Q  +QT +  NG    +     GE         DP    S  +     L +TV  +  V 
Sbjct: 1414 QV-TQTPTLVNGRTKLRQPSPVGENSLFILGQTDP----SLADLPPHRLTSTVLFK--VK 1466

Query: 598  DTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGS 657
            D G GIP + L T+F ++ QV A  +RK GGTGLGLAIC+ +V+  GG++ V S +  GS
Sbjct: 1467 DQGRGIPADKLETIFERFHQVDASDSRKKGGTGLGLAICRSIVQQHGGKIWVESTLGEGS 1526

Query: 658  TFTFILPYQVSPIEENSDD-PDDLSD 682
            TF F LP + +  EE  DD  ++LSD
Sbjct: 1527 TFYFTLPERNT--EEGKDDHKENLSD 1550


>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
 gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
          Length = 2059

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/210 (38%), Positives = 121/210 (57%), Gaps = 27/210 (12%)

Query: 323  VNYMGMDVTDQVRKREKMAK------LREEIAVQKAKE-----TELNKTIHITEETM--- 368
            VN M  ++T QVR   ++AK          ++V+   E       +N+ IH  +ET    
Sbjct: 1283 VNTMAANLTTQVRSISEIAKAVTKGDFTRVVSVEAKGEMLQLKVTINEMIHNLKETTIKN 1342

Query: 369  -----------RAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGD 416
                       RAK   +A MSHEIR+P+ G++ M ++  +T+L  EQR+ L ++ SS  
Sbjct: 1343 TLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYLTMVQSSAG 1402

Query: 417  LVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVP 475
             +L +INDILD SK+E+G ++L+ + F  R  +   L+T A  + QK L L  DIA D+P
Sbjct: 1403 SLLTIINDILDFSKIEAGRLELDQSDFSLRAHLYDTLKTLAWRAHQKGLELVCDIASDIP 1462

Query: 476  IEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
              ++GD  R+RQI+TNL+ NAIKFT EG+V
Sbjct: 1463 DSLVGDPGRLRQIVTNLVGNAIKFTSEGEV 1492



 Score = 99.4 bits (246), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 22/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILL EDN +N  +A  ++++ GH + +  NG++AV A + +++DLILMDV MP M G +A
Sbjct: 1740 ILLAEDNVVNQRLAVRLLEKFGHKVTLAENGLQAVAACEIKHFDLILMDVQMPHMGGFEA 1799

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T  IR  E                      SN     PIIAMTA+AL+    +C   GMD
Sbjct: 1800 TAQIRKLE----------------------SNEGIHTPIIAMTAHALARDRVKCIEAGMD 1837

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP+   +LK  +E+Y 
Sbjct: 1838 DYISKPINPDQLKSMIEKYL 1857



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 52/88 (59%)

Query: 582  MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
            +D+ ++  V +R  V D+GIGIP+  L  +F  + Q      R+YGGTGLGL I  +LVE
Sbjct: 1498 IDKYIDGEVLLRFSVIDSGIGIPKEKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVE 1557

Query: 642  LMGGRLTVTSKVHCGSTFTFILPYQVSP 669
            LM G+L V SK   GSTF F   +   P
Sbjct: 1558 LMKGKLRVVSKPGKGSTFEFTAQFPTKP 1585


>gi|167644688|ref|YP_001682351.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347118|gb|ABZ69853.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 882

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 120/212 (56%), Gaps = 2/212 (0%)

Query: 300 LFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNK 359
           + G K+   Y   V S+ G+   V+Y      D+ R  + +     ++  +K  E EL +
Sbjct: 333 VLGEKSLTDYELTVRSRDGKQTVVSYNATTFYDRGRTLQGVFAAARDVTERKRVEAELQQ 392

Query: 360 TIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLV 418
                E   R K   LA+MSHEIR+P+  V+ +A++L+ T L  EQ + + +   SGD +
Sbjct: 393 AKAAAESASRTKSDFLASMSHEIRTPMNAVMGIADLLAKTALTPEQDKYVQIFRRSGDNL 452

Query: 419 LQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIE 477
           L LINDILDLSKVE+  + LE   F   + ++  ++  A   Q K L+L  +IA DV  +
Sbjct: 453 LNLINDILDLSKVEASQLDLEQTGFSLSDHLEKAIEMVAPKAQEKGLILISEIAPDVSND 512

Query: 478 VIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           ++GD  R+RQ+L NL+ NAIKFT  G+V +K+
Sbjct: 513 LVGDPTRLRQVLLNLLGNAIKFTQAGQVSLKV 544



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 22/149 (14%)

Query: 852  PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
            PE  P P  +IL+ ED+  N  +A + ++   + IDV   G+ A    +  +YDL+LMD 
Sbjct: 647  PEA-PLPALRILMAEDSPDNCTIALAYLEDTPYLIDVAETGLIAFEMFKAGHYDLLLMDR 705

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MPVMDGL ATR IR++E   N            +P+          PIIA+TA+AL   
Sbjct: 706  QMPVMDGLAATRAIRAWEKAHNR-----------LPT----------PIIALTASALKGD 744

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             E C A G  ++++KP+    L + +  Y
Sbjct: 745  RETCLAAGCTAYLTKPIKQDVLLQAIRDY 773



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 54/85 (63%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           D D      +R  V DTGIGI  + L  +F ++ Q  +   R++GG+GLGL I K+LVEL
Sbjct: 547 DADGSVPTALRFSVADTGIGIAGDKLARVFERFTQADSSTTRRFGGSGLGLTISKRLVEL 606

Query: 643 MGGRLTVTSKVHCGSTFTFILPYQV 667
           MGGR+ VTS +  GS F F +P++V
Sbjct: 607 MGGRIGVTSTLGQGSVFAFSVPFEV 631


>gi|254482907|ref|ZP_05096143.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036779|gb|EEB77450.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 998

 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 99/155 (63%), Gaps = 4/155 (2%)

Query: 358 NKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDL 417
           +K + +TE   R    L+ MSHEIR+P+ GV+ MAE+L  T L  +Q + + ++I S D 
Sbjct: 343 DKLVQVTEAKSR---FLSAMSHEIRTPMNGVIGMAELLEGTDLTNQQGEYVSLIIKSADT 399

Query: 418 VLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPI 476
           +L LINDILD SK+E+G + LE   F  R+++   LQT A    +K + L   I  D+P 
Sbjct: 400 LLGLINDILDFSKIEAGRLDLEHIPFNLRDILGDTLQTLALRANEKDIELTFHIPPDIPD 459

Query: 477 EVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
           ++IGD LR+RQ++ NL+ NAIKFT  G+V + L +
Sbjct: 460 KLIGDPLRLRQVIVNLVGNAIKFTEVGEVAVDLLL 494



 Score = 97.1 bits (240), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 88/164 (53%), Gaps = 23/164 (14%)

Query: 826 EPQKICEMQEK-PDRISQSPSSSSAEVPETKPKPKPK-ILLVEDNKINVMVAKSMMKQLG 883
           +P K  ++Q    D +  + S +  +V    P P+ + +LLVEDN +N+ VA  ++++ G
Sbjct: 703 KPTKQFDLQRAITDALGVTTSHTVKKVQNLVPGPEARRVLLVEDNPVNLKVALELLRKRG 762

Query: 884 HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIE 943
           HSI+V  NG EAV A   +++D++LMDV MPVMDGL ATR+IR  E              
Sbjct: 763 HSIEVARNGAEAVEAAAKEDFDVVLMDVHMPVMDGLTATRIIRERERV------------ 810

Query: 944 QAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987
                    +    +PIIA+TA A  E  E     GM  FVSKP
Sbjct: 811 ---------DKVAHVPIIALTAGATLEDRENSITAGMTDFVSKP 845



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 50/75 (66%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           ++ + +  +V D+GIGI +     +F+ + Q      R++GGTGLGLAI +QL E+MGG 
Sbjct: 499 DSDIQLVFEVRDSGIGISDAQQSKVFKAFDQADTSTTRQFGGTGLGLAIARQLTEMMGGT 558

Query: 647 LTVTSKVHCGSTFTF 661
           + V SK++ GSTF+F
Sbjct: 559 MAVRSKLNEGSTFSF 573


>gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1179

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 107/167 (64%), Gaps = 2/167 (1%)

Query: 345 EEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
           ++I+ +K  E EL +     E   RAK   LATMSHEIR+P+ G++ M E+  +T++  E
Sbjct: 532 QDISERKFTERELLRAKESAEAASRAKGDFLATMSHEIRTPMNGIIGMTELALDTEMSAE 591

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQK 462
           QR+ L ++ SS D +L +INDILD SK+ESG M+LE+ +F  R +     +T A  + QK
Sbjct: 592 QREYLNMVKSSADALLTIINDILDFSKIESGKMELESVEFDVRNLFASAEKTLAIRAAQK 651

Query: 463 ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            L L  D+   +P  ++GD  R+RQ+LTNL+ NAIKF+  G + +++
Sbjct: 652 GLELVYDVDGAIPDLLVGDPGRLRQVLTNLLGNAIKFSEHGAITLRM 698



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 22/137 (16%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILL EDN++N  +A +++ + GH + + NNG+EAV      ++D+ILMD+ MP M G++A
Sbjct: 945  ILLAEDNRVNQKLAITLLGKWGHRVVLANNGIEAVEHAGRVDFDVILMDLQMPEMSGMEA 1004

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TRLIR                EQ       S       I+AMTANA+SE  + C   GMD
Sbjct: 1005 TRLIR----------------EQDQLRGRHSR------IVAMTANAMSEDRQRCLDAGMD 1042

Query: 982  SFVSKPVTFQKLKECLE 998
             +++KP+  +KL+  L+
Sbjct: 1043 DYIAKPLNTEKLRALLD 1059



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 60/103 (58%), Gaps = 3/103 (2%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R +V D GIGIP + L  +F  + Q      RKYGGTGLGLAI  +LV  MGG L+V S
Sbjct: 710 VRIEVADQGIGIPVDKLAHIFEAFTQADTSTTRKYGGTGLGLAISSKLVAAMGGDLSVES 769

Query: 652 KVHCGSTFTF--ILPYQVS-PIEENSDDPDDLSDMADQDSVTD 691
           +V  GS F F   LP  ++ P E + +   +LS +   D+ T+
Sbjct: 770 QVGIGSVFGFTTTLPVALNQPSEISCESLVNLSALIVDDNATN 812


>gi|361126097|gb|EHK98113.1| putative Two-component system protein A [Glarea lozoyensis 74030]
          Length = 1020

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 115/188 (61%), Gaps = 11/188 (5%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
           GV  + MD+T +++ RE       E+  Q+ + T L       +E  R K Q LA MSHE
Sbjct: 356 GVIGVSMDIT-EIKDREL------ELQAQEKENTRLLANEAAAKEASRLKSQFLANMSHE 408

Query: 381 IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
           IR+P+ GV+ MAE+L++T LD EQ++    +  S + +L +INDILD SKVESG + +E 
Sbjct: 409 IRTPIAGVIGMAELLADTDLDEEQQECAENIQRSANGLLTVINDILDFSKVESGRLDIEE 468

Query: 441 AKFRPREVVKHVLQTAA-ASLQKILMLEGDI--ADDVPIEVIGDVLRIRQILTNLISNAI 497
            +F    VV+ V +    A+ +K L+ E DI    D  + V+GD  R+RQI+TNL++N+I
Sbjct: 469 VQFSLSVVVRDVSKMLGFAAERKNLIFESDINVGQDTDLIVMGDPGRVRQIITNLLTNSI 528

Query: 498 KFTPEGKV 505
           KFT EG V
Sbjct: 529 KFTSEGHV 536



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 28/148 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY--------DLILMDVC 912
            KILLVEDN IN  +A   +++LG  +  V NG EA+  ++  +         D+ILMDV 
Sbjct: 705  KILLVEDNAINQQIALKTIRKLGFVVSAVWNGKEALDYLEAADSPKPPHPKPDIILMDVQ 764

Query: 913  MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            MP++DG +AT LIR                    P +  S   + IPI+AMTA+A+    
Sbjct: 765  MPIIDGYRATHLIRHHS-----------------PYNVMS---RDIPIVAMTASAIQGDR 804

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQY 1000
            E+C   GMD ++SKPV  + L++ L ++
Sbjct: 805  EKCKKAGMDDYLSKPVKGKTLEKMLVRW 832



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 54/91 (59%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI E     LF+ + Q  +  AR++GGTGLGL I K LV+LM GR+T+ S +  
Sbjct: 556 VEDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVDLMHGRITLESTLGN 615

Query: 656 GSTFTFILPYQVSPIEENSDDPDDLSDMADQ 686
           G+T TF +P+      + S    DL  + D+
Sbjct: 616 GTTATFWIPFNKPQYHDGSTGLIDLGSLPDR 646


>gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 1391

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 149/301 (49%), Gaps = 42/301 (13%)

Query: 219 RADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVEIFSGAG-VK 274
           R +     ++ N PV +  +  +LR  ++   +     L  ED +GKTD+EIF   G   
Sbjct: 704 RENEVFRSLIDNVPVSIYAKRSDLRQFYVNKGWCDLTGLSREDAIGKTDIEIFGEDGEAF 763

Query: 275 ESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETI---GVNYMGMDVT 331
            + D    VL  G   + E   ET      +    V   F++ G  I   G  Y+    T
Sbjct: 764 VAGDLA--VLRTGETQEVE---ETVRLADGS----VRHQFARKGAMIASDGSLYLIGSTT 814

Query: 332 DQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVS 390
           D              I   K +E EL++         RAK + LA MSHEIR+P+ GV+ 
Sbjct: 815 D--------------ITELKMREAELSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLG 860

Query: 391 MAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK 450
           MAE+L+ + LD +Q+    +++ SG+ +L +INDILD SK+++G M L+ A F   E ++
Sbjct: 861 MAELLAKSNLDPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIE 920

Query: 451 HVLQTAAASLQKILMLEGDIADDVPIE------VIGDVLRIRQILTNLISNAIKFTPEGK 504
            V     A+L      E D+   V +E       +GDV RIRQI+TNL+ NA+KFT EG 
Sbjct: 921 DV-----ATLVSTRAKEKDLELIVRVEPRLESLFVGDVGRIRQIVTNLLGNAVKFTDEGH 975

Query: 505 V 505
           V
Sbjct: 976 V 976



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 35/180 (19%)

Query: 835  EKPDRISQSPSSSSAEVPETKPKP-KPK------------ILLVEDNKINVMVAKSMMKQ 881
            E+PD     P + S +  + +P P +P+            IL+ EDN++N MV   ++ +
Sbjct: 1223 ERPDVPQPPPLALSEQRAQLQPPPVRPRLPATGGDGHRLDILVAEDNEVNQMVFTQILGE 1282

Query: 882  LGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAG 941
             G+  ++V NG +A+ A    N  +ILMDV MP M GL+AT  IR  E            
Sbjct: 1283 TGYGFEIVGNGRKALDAFGKLNPCMILMDVSMPEMSGLEATAAIRQLEQQ---------- 1332

Query: 942  IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                     +  H   +PI+ +TA+AL    E C   GMD ++ KP++ + L E +E++ 
Sbjct: 1333 ---------TGTH---VPIVGVTAHALKGDRERCLEAGMDDYLPKPISPRALLEKVERWL 1380



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 44/68 (64%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIPE  L  +F K+ QV     R++ GTGLGLAI  +LVELMGG + V S    
Sbjct: 995  VTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGTIGVESAEGK 1054

Query: 656  GSTFTFIL 663
            GSTF F +
Sbjct: 1055 GSTFWFTV 1062


>gi|224133676|ref|XP_002327653.1| histidine kinase osmosensor protein [Populus trichocarpa]
 gi|222836738|gb|EEE75131.1| histidine kinase osmosensor protein [Populus trichocarpa]
          Length = 1258

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 141/298 (47%), Gaps = 46/298 (15%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEIL-SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSK 430
           Q LA MSHE+R+P+  V+ + +IL  +  L  EQ   +  +      +L+L+N+ILDLSK
Sbjct: 515 QFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYATVTQIRKCSTALLRLLNNILDLSK 574

Query: 431 VESGVMKLEAAKF-RPREVVKHV----LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           VESG + LE A+F   RE+   +    +Q    +++ +L    D++DD+P  V GD  R+
Sbjct: 575 VESGKLVLEDAEFDLGRELEGLIDMFSVQCINHNVEAVL----DLSDDMPKLVRGDSARV 630

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
            QI  NLISN+IKFT  G + ++            G  +    Y  A   + ++K +   
Sbjct: 631 VQIFANLISNSIKFTTTGHIILR------------GWCENFNTYNDARFHLDQKKMRCAP 678

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
           +    Q G H KK                      +  +D +  +W   D  DTG GI  
Sbjct: 679 KPKLRQQGNHTKK----------------------AWKKDNKTILWFEID--DTGCGIDP 714

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
           +   ++F  + Q      R +GGTGLGL I + LV  MGG + V  K   G+     L
Sbjct: 715 SKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKNGSGTLMRLYL 772



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 50/199 (25%)

Query: 821  TSKTNEPQKICE-MQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMM 879
            T+  NE  K  E + E      Q  S SS    + K     +ILL ED  +   VA  M+
Sbjct: 1068 TATQNESSKHEERISESSSHKEQGNSYSSKAGNQQKALDGLRILLAEDTPVLQRVATIML 1127

Query: 880  KQLGHSIDVVNNGVEAVHAVQC---------------------------QNYDLILMDVC 912
            +++G  +  V +G++AV A+ C                             YDLILMD  
Sbjct: 1128 EKMGAKVIAVGDGLQAVEALNCVLSEKDLKRESPGDDGERGLQTDIQESPPYDLILMDCQ 1187

Query: 913  MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            MP MDG +AT+ IR  E                   +G+  H   IPI+A+TA+A+S   
Sbjct: 1188 MPKMDGYEATKAIRKSE-------------------AGTGFH---IPIVALTAHAMSSDE 1225

Query: 973  EECFANGMDSFVSKPVTFQ 991
             +C   GMD++++KP+ ++
Sbjct: 1226 AKCLEVGMDAYLTKPIDYK 1244


>gi|242280815|ref|YP_002992944.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123709|gb|ACS81405.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 568

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 99/140 (70%), Gaps = 1/140 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+  ++ M E+L  T +D EQR+ L +  ++G+ +L++IND+L++SK+
Sbjct: 347 EFLANMSHEIRTPMHSILGMVELLKETNVDEEQREFLNIAGTAGESLLEIINDVLEISKI 406

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G +++E  +F  RE+V+ V+   A  + +K L L   I ++VP +V+GD  RIRQ+L 
Sbjct: 407 EAGHLQIERHEFLLREMVERVVSVFALDAARKGLKLVCHIDENVPDKVVGDATRIRQVLN 466

Query: 491 NLISNAIKFTPEGKVGIKLY 510
           NLISNA+KFT EG + + +Y
Sbjct: 467 NLISNAVKFTSEGTIVVSIY 486



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 42/66 (63%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D GIGI  + +  +F  + Q  +  +RKYGGTGLGL I ++LV +MGG + V S V  
Sbjct: 496 VKDEGIGIAADKINYIFESFTQADSSTSRKYGGTGLGLPISRKLVSMMGGEIFVCSSVGE 555

Query: 656 GSTFTF 661
           G+TF F
Sbjct: 556 GTTFRF 561


>gi|436840339|ref|YP_007324717.1| Histidine kinase [Desulfovibrio hydrothermalis AM13 = DSM 14728]
 gi|432169245|emb|CCO22613.1| Histidine kinase [Desulfovibrio hydrothermalis AM13 = DSM 14728]
          Length = 1154

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 109/175 (62%), Gaps = 4/175 (2%)

Query: 338  EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILS 396
            EK A L EEI   K  E +L   I   +E   AK   LA+MSHEIR+PL  ++ +A++L 
Sbjct: 839  EKTADLNEEIDEHKKTEEQLELAIVKAQEANHAKSAFLASMSHEIRTPLNSIIGVADLLK 898

Query: 397  NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV--LQ 454
            NT +  EQ + + +  SSG+++L +INDILD SK+E+  +KLE+      + V+ +  LQ
Sbjct: 899  NTDMSEEQAEYVNIFESSGEILLSIINDILDFSKIEADHVKLESIPIDLLQEVESIVGLQ 958

Query: 455  TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            T AA+ + I ++      DVP  VIGD  R+RQI+ N++SNA+KFT  G+V I +
Sbjct: 959  TTAAATRNIELV-CRYKPDVPEFVIGDPTRLRQIILNILSNAVKFTSSGEVSITV 1012


>gi|254415523|ref|ZP_05029283.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196177704|gb|EDX72708.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1568

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 108/188 (57%), Gaps = 10/188 (5%)

Query: 330  VTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRA-----KQMLATMSHEIRSP 384
            V DQV      A L E+   Q+ + TE N  +    +T  A      + LATMSHEIR+P
Sbjct: 863  VADQVGIAIAQAHLWEQETRQRQQLTEQNVALEKARQTAEAATQAKSEFLATMSHEIRTP 922

Query: 385  LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
            +  V+ M  +L +T+L  +QR     + +SGD +L +INDILD SK+ESG M+LE   F 
Sbjct: 923  MNAVIGMTGLLLDTELTSDQRYFAETIRNSGDALLTIINDILDFSKIESGKMELEEQPFE 982

Query: 445  PREVVKH---VLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTP 501
             R  ++    +L T AA  +K L L   I    P  + GDV R+RQIL NLISNA+KFTP
Sbjct: 983  LRTCIEEALDLLTTKAA--EKNLELAYLIDSQTPNWIAGDVTRLRQILVNLISNAVKFTP 1040

Query: 502  EGKVGIKL 509
             G+V + +
Sbjct: 1041 TGEVLVSV 1048



 Score =  102 bits (255), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 91/167 (54%), Gaps = 23/167 (13%)

Query: 836  KPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA 895
            +P +I +SP  S +  P    +   +IL+ EDNK+N  +A  +++++G+  DV  NG+E 
Sbjct: 1299 QPTKIKRSPVGSPSLDPTLAQRIPLRILVAEDNKVNQQLALQLLQRMGYRADVAGNGLEV 1358

Query: 896  VHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955
            + A++ Q YD++ MDV MP MDGL ATR I                 +Q +P++      
Sbjct: 1359 IEALRRQPYDVVFMDVQMPEMDGLDATRHI----------------CQQWLPAN------ 1396

Query: 956  KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             R  IIAMTANA+    E+C   GMD ++SKP+   +L   L Q  P
Sbjct: 1397 -RPRIIAMTANAMQGDREKCLEVGMDDYISKPIRVNELVRVLSQSQP 1442



 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            V DTGIGIP + +  LF+ + QV +  +R+YGGTGLGLAICK+L E+MGG++ V S
Sbjct: 1069 VKDTGIGIPVDRIHRLFKSFSQVDSSTSRQYGGTGLGLAICKRLCEMMGGQMWVES 1124



 Score = 42.4 bits (98), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 27/141 (19%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV-QCQNYDLILMDVCMPVMDGL 919
            ++L+V+DN  N  +     +  G       +G EA+  + Q + YD+ ++D+ MP MDG+
Sbjct: 1179 RLLIVDDNTTNCQILIRQAQSWGMESQATESGQEALAWLSQGEQYDIAILDMQMPGMDGI 1238

Query: 920  KATRLIR-SFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
                 IR  F+D                         K  P++ +++    E A      
Sbjct: 1239 TLGEQIRHQFKD-------------------------KEFPLLILSSMGKPEIASGVVEA 1273

Query: 979  GMDSFVSKPVTFQKLKECLEQ 999
               +F+SKP+   +L   L Q
Sbjct: 1274 NFAAFLSKPIKQSQLYNLLTQ 1294


>gi|392308226|ref|ZP_10270760.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas citrea
           NCIMB 1889]
          Length = 1319

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 193/458 (42%), Gaps = 93/458 (20%)

Query: 211 EELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSL---HEEDILGKTDVEI 267
           +E+   L +     H ++   P    ++DK   +  +   F +     E D++G T   +
Sbjct: 445 QEIEAALSQQLELTHHIINAIPNPTYYRDKNGVFMGVNRAFLTFLNQFEVDVIGGTLDNV 504

Query: 268 FSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMG 327
           F            +++ ++ +  + E+        +   ++Y  P F+  G+  G+  M 
Sbjct: 505 FDTGTASLFHAQAQKIFQQQMNVEFELVTLDGQDNAVELIVYEAPFFNSDGQVAGIVGML 564

Query: 328 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLT 386
           +DVT            R E+      E EL  +  + + + R K + LA MSHEIR+P+ 
Sbjct: 565 LDVTQ-----------RNEL------ERELVSSKDLADRSARVKGEFLANMSHEIRTPMN 607

Query: 387 GVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446
            ++ MA +  +T L+ +Q   +  +  +   +L LINDILD SK+++G ++LE  KF   
Sbjct: 608 AIIGMAHLALSTDLNPKQHNYVSKIDVAAKQLLHLINDILDFSKIDAGKIELEHTKFELD 667

Query: 447 EVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           +++ +V+   +   Q K L L  D+ + +P               NLI + ++    G++
Sbjct: 668 QLLDNVMTVISVKAQEKQLELIFDVPNTIP--------------NNLIGDPLRL---GQI 710

Query: 506 GIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQD 565
            I L                      A +AVK                F +K H      
Sbjct: 711 LINL----------------------AGNAVK----------------FTEKGH------ 726

Query: 566 HKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARK 625
                     VS      E  E T  I   V DTGIG+       LF+ + Q      RK
Sbjct: 727 ----------VSIQIRELEQAEETTKITFSVIDTGIGMNPQQQQKLFKSFSQADTSITRK 776

Query: 626 YGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
           YGGTGLGL I +QLV+LMGG + + S +  GSTF F L
Sbjct: 777 YGGTGLGLTISQQLVKLMGGEIYIESTLGGGSTFYFTL 814



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 68/127 (53%), Gaps = 24/127 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILL ED  +N  +A  ++   G  IDV N+GVEA+  +    YD++LMD+ MP M G++A
Sbjct: 979  ILLAEDQPVNQEIAVEILSNYGAKIDVANDGVEALKKIAENKYDVVLMDMQMPNMGGIQA 1038

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T+ IR                    P++G       +PIIAMTANA+ +    C  +GM+
Sbjct: 1039 TQAIRK------------------QPNNGD------LPIIAMTANAMQDDITLCLDSGMN 1074

Query: 982  SFVSKPV 988
              +SKP+
Sbjct: 1075 DHISKPI 1081


>gi|389756152|ref|ZP_10191384.1| histidine kinase [Rhodanobacter sp. 115]
 gi|388431850|gb|EIL88894.1| histidine kinase [Rhodanobacter sp. 115]
          Length = 1196

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 103/150 (68%), Gaps = 2/150 (1%)

Query: 362 HITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQ 420
           ++ E+   AK Q LAT+SHEIR+P+TGV+ MAE+L +T    +QR     M  SG L+L+
Sbjct: 821 NLAEQASAAKSQFLATLSHEIRTPMTGVMGMAELLLSTSQTEQQRDYTEAMQRSGGLLLK 880

Query: 421 LINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVI 479
           L+ND LDL+++E+G ++LE A F PR + + V +      Q K L+++ ++ D++P+ ++
Sbjct: 881 LVNDALDLARIEAGKLELELAPFSPRLLAEDVARLECGQAQAKGLVMKTELDDELPLRLV 940

Query: 480 GDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           GD +RI+Q+L NL++NA+KFT  G V + +
Sbjct: 941 GDAMRIKQVLFNLVNNALKFTERGSVTLAM 970



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 28/155 (18%)

Query: 846  SSSAEVPETKPKPKPKIL---LVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
            S +    +TKP    ++L   LVED+ I   V + +++  GH +    NG++A+  ++  
Sbjct: 1053 SMTKRTAKTKPSGNGRVLDVLLVEDDAIVAAVVRGLLEHQGHRVRYAGNGLQALAELEQG 1112

Query: 903  NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
              D IL+D+ +P +DGL+  RLIR  E                           R+ I+A
Sbjct: 1113 PCDAILLDLDLPGVDGLQLARLIRQGEHA-------------------------RVWIVA 1147

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
            +TA +  +      A GMD F+ KP+T  +L E L
Sbjct: 1148 ITARSGGDEEARSRAAGMDDFLRKPLTGAQLAEVL 1182



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 2/76 (2%)

Query: 594  CDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKV 653
            C V DTG GIP+ +   LF ++ Q   D  ++  G+GLGLAIC++LV LM G +++ S  
Sbjct: 979  CTVIDTGPGIPKESQARLFERFEQ--DDGPQRRSGSGLGLAICRELVALMEGTISLHSAS 1036

Query: 654  HCGSTFTFILPYQVSP 669
              GSTF+  LP +++P
Sbjct: 1037 GQGSTFSVRLPLKLAP 1052


>gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 765

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 118/204 (57%), Gaps = 19/204 (9%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           V  V+  SG  +  + + +DVT++ ++ E +         ++AKE          E   R
Sbjct: 344 VRLVYDDSGRPLHADGILVDVTERHQQSELL---------REAKEA--------AEVASR 386

Query: 370 AKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
            K   LATMSHEIR+PL GV+ MA +L +T+L  EQR+    +  SG+L+L LINDILD 
Sbjct: 387 VKSDFLATMSHEIRTPLNGVIGMASLLLDTELSDEQREYAETIDVSGNLLLALINDILDF 446

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
           SK+E+G M+LE   F  R +++  L   A  + +K L L+      VP  VIGD  R+RQ
Sbjct: 447 SKIEAGRMELEEVAFELRYLIEETLAIVAPRAREKNLSLDWQAEAAVPRRVIGDAQRMRQ 506

Query: 488 ILTNLISNAIKFTPEGKVGIKLYV 511
           +L NL+ NAIKFT +G V I++ V
Sbjct: 507 VLLNLVGNAIKFTHDGSVEIRVRV 530



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 73/142 (51%), Gaps = 25/142 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+ EDN++N  V   ++KQLG   + V NG  AV A     +DL+LMD  MP MDG  
Sbjct: 641  RVLVAEDNEVNRRVVVHILKQLGFEPEAVENGRAAVEAFAAGTFDLVLMDCRMPEMDGFA 700

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR++R       +DA                     +PIIA+TA+A ++ +  C   GM
Sbjct: 701  ATRVLRD-----QFDAL--------------------VPIIAVTASASADDSRMCLEAGM 735

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D  +SKPVT   L   L ++ P
Sbjct: 736  DDHMSKPVTKDGLCAMLRRWLP 757



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 49/74 (66%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI    +  +F  + Q  A   R+YGGTGLGLAICK+LV+ MGG + V S+   
Sbjct: 544 VADTGIGISPGEMMRIFEPFSQADASTTRQYGGTGLGLAICKRLVDRMGGTVVVKSQPGR 603

Query: 656 GSTFTFILPYQVSP 669
           GSTF+F +  +V+P
Sbjct: 604 GSTFSFTVRLRVAP 617


>gi|149176849|ref|ZP_01855459.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148844286|gb|EDL58639.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 818

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/347 (31%), Positives = 177/347 (51%), Gaps = 44/347 (12%)

Query: 178 LEKMLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGH 237
           LE +   S   EQ + E   ES++  E +SS          R    L  +   APV MG 
Sbjct: 254 LEWVGTVSDIHEQRMAE---ESLSAAEAESS----------RQKRELELIYDTAPVGMGL 300

Query: 238 QDKELRYRFIYNHFPSLH---EEDILGKTDVEIFSGAG--VKESQDFKREVLEKGLPAK- 291
            D+E RY  I +    ++    E  LG+   E+  G    +K   D   +V + G   K 
Sbjct: 301 VDREYRYLRINDTLARINGISREAHLGRVCFELVPGIADRIKPLYD---QVFQTGKAVKN 357

Query: 292 REITFETELFGS-KTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQ 350
           +E+  +T      + +L+   P+  ++GE  GV+ +  D+T    ++E    LR+  + Q
Sbjct: 358 QEVRGKTPASDKERCWLVNYHPMTHRNGEVWGVSSIVQDITA---RKEMEEALRD--SEQ 412

Query: 351 KAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGV 410
           +A +  L K+           + LA MSHEIR+P+  V+  A++L     D + R  + +
Sbjct: 413 QASQANLAKS-----------EFLANMSHEIRTPMAAVLGYADVLLGHLKDPDNRNCVMI 461

Query: 411 MISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLE 467
           M  +G+ +L+LINDILDLS++E+G ++++  +   RE+V  V   +Q  A   +K LML 
Sbjct: 462 MKRNGEHLLELINDILDLSRIEAGKLEVDLNEASLRELVADVQTLMQVRAD--EKNLMLN 519

Query: 468 GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
                 VP +++ D  R+RQIL NLI NAIKFT +G+V + + ++P+
Sbjct: 520 VKFTGQVPEKIVTDATRLRQILINLIGNAIKFTDQGEVRLVIRLLPD 566


>gi|298528942|ref|ZP_07016345.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510378|gb|EFI34281.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 468

 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 141/250 (56%), Gaps = 16/250 (6%)

Query: 278 DFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVN-YMGM-DVTDQVR 335
           D +R V  K  P   +++ + ++  S+     ++ +  + G+   +  +  M D+T QV 
Sbjct: 131 DHRRRVFSKK-PVAEDVSLKLKVQNSRGIWARIKSIAVEHGDQKALRCFTAMQDITRQVE 189

Query: 336 KREKMAK-----------LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRS 383
             EK+ +           LR+EI  +K  E EL ++    E   +AK   LA MSHEIR+
Sbjct: 190 YSEKLLEMNRTLEGTNNMLRQEIEARKKVEQELIESRDAAEAATKAKSGFLANMSHEIRT 249

Query: 384 PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
           PL G+  M +++ +T LD EQ++LL    +SG  +L +++DIL+ + ++    +LE   F
Sbjct: 250 PLNGIFGMLQLMEDTSLDEEQQELLQTAKASGRGILTILSDILEFAGLDQVEPRLENRPF 309

Query: 444 RPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
             R VV+  +Q+  AS  QK L ++  IA D+P EV GD  R+RQIL N++SNA+KFT +
Sbjct: 310 DLRSVVQQTIQSLEASARQKGLGIKLSIAADLPGEVCGDQARVRQILFNMLSNAVKFTQD 369

Query: 503 GKVGIKLYVV 512
           G++ + + ++
Sbjct: 370 GEIHLDVSLL 379


>gi|389793241|ref|ZP_10196414.1| two component system sensor-response regulator hybrid protein
           [Rhodanobacter fulvus Jip2]
 gi|388434809|gb|EIL91739.1| two component system sensor-response regulator hybrid protein
           [Rhodanobacter fulvus Jip2]
          Length = 1198

 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 101/152 (66%), Gaps = 10/152 (6%)

Query: 363 ITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQL 421
           + E+   AK Q LAT+SHEIR+P+TGV+ MAE+L +T L+ +Q      M  SG ++L+L
Sbjct: 826 LAEQASAAKTQFLATLSHEIRTPMTGVMGMAELLLSTPLNAQQHDYAQAMQRSGGMLLKL 885

Query: 422 INDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-----TAAASLQKILMLEGDIADDVPI 476
           +ND LDL+++E+G ++LE A F PR++V  V Q       A  L+ +L ++    DD+P 
Sbjct: 886 LNDALDLARIEAGRLELELAPFDPRQLVTDVAQLEQGLAQAKGLRFVLQVD----DDLPE 941

Query: 477 EVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            V+GD +R++QIL NL +NA+KFT  G V ++
Sbjct: 942 RVVGDAVRVKQILLNLANNALKFTQRGSVTVR 973



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 23/140 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILLVED+ I   V + +++Q GH +  V+NG+ A+  +    +D++L+D+ +P +DG +
Sbjct: 1071 RILLVEDDTIVAAVLRGLLEQQGHQVCHVDNGLAALAELPHSRFDVVLLDLDLPGVDGFQ 1130

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
              RLIR  E  G                       +R+PI+ +TA + SE      A GM
Sbjct: 1131 IARLIRQREGAG-----------------------RRLPIVPVTARSGSEDEALARAAGM 1167

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D F+ KPVT ++L   L  Y
Sbjct: 1168 DGFLRKPVTGEQLAAALICY 1187



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            + DTG GIPE +   LF ++ Q +    R   G+GLGLAIC++L ++MGG + + S++  
Sbjct: 985  ISDTGPGIPEASQARLFERFEQEAGPQRRA--GSGLGLAICRELADMMGGSIELESRMAH 1042

Query: 656  GSTF 659
            GSTF
Sbjct: 1043 GSTF 1046


>gi|404492663|ref|YP_006716769.1| sensor histidine kinase response regulator, Hpt domain-containing
           [Pelobacter carbinolicus DSM 2380]
 gi|77544744|gb|ABA88306.1| sensor histidine kinase response regulator, Hpt domain-containing
           [Pelobacter carbinolicus DSM 2380]
          Length = 1014

 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 99/156 (63%), Gaps = 2/156 (1%)

Query: 356 ELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISS 414
           EL +     EE  RAK Q L  MSHEIR+P+ GV+ M E+L ++ L  EQRQ+   +  S
Sbjct: 344 ELQQARQHAEEASRAKSQFLVNMSHEIRTPMNGVIGMTELLLDSPLAEEQRQIADTVAES 403

Query: 415 GDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADD 473
           G  +LQ+INDILD SK+E+G ++LE   F    +V+      AA  Q K L L  D+ADD
Sbjct: 404 GRALLQIINDILDFSKLEAGKLQLENIPFDICGIVEEAAGLFAAKAQTKGLELVVDMADD 463

Query: 474 VPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           VP  ++GD  R+RQ+L NL+SNA+KFT +G V + L
Sbjct: 464 VPPLLLGDPGRLRQVLVNLLSNALKFTKQGYVLVTL 499



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 84/161 (52%), Gaps = 23/161 (14%)

Query: 841  SQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            SQ+P  + A   ET    K ++LLVEDN +N  VAK M+++LG ++ +  +G EA+ A  
Sbjct: 729  SQTPCPNPAS--ETSTPTKARVLLVEDNPVNQQVAKGMLEKLGCNVTLAADGQEALTAYS 786

Query: 901  CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
               +DL+ MD  MP MDG +ATR IR+ E                       +H    PI
Sbjct: 787  HSPFDLLFMDCQMPNMDGYEATRAIRADE---------------------KQHHKTTCPI 825

Query: 961  IAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            IAMTA+ L    E C   GMD ++ KP T ++++  L ++ 
Sbjct: 826  IAMTAHTLPGDRERCLKAGMDDYLGKPFTMRQVRTLLNRWL 866



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 45/75 (60%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E +  I   + D+GIGI    +P LFR + Q      RKYGGTGLGL+IC+ L+  MGG+
Sbjct: 506 EQSATIVVSIRDSGIGIEPQHIPQLFRPFSQADGSTTRKYGGTGLGLSICQDLIGHMGGQ 565

Query: 647 LTVTSKVHCGSTFTF 661
           + V S+   GS F F
Sbjct: 566 IHVFSQPGQGSNFWF 580


>gi|395762634|ref|ZP_10443303.1| multi-sensor hybrid histidine kinase [Janthinobacterium lividum
           PAMC 25724]
          Length = 1184

 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 167/327 (51%), Gaps = 35/327 (10%)

Query: 190 QALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRY---RF 246
           Q  +  +  S+T++ ++     EL   L    NF+  +++  P+ +  +D + RY     
Sbjct: 370 QGRLAGVTGSLTDITERRLATRELRHNL----NFVDALIETIPIPLCLKDGQGRYLRANR 425

Query: 247 IYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFK-REVLEKGLPAKREITFETEL-FGSK 304
            +  F  L + DIL +T  +I      ++      R +L+KG       T+E  +  G +
Sbjct: 426 AFCAFFQLDKTDILHRTAADILPQQEAQQVAQQDLRLMLDKG-----NQTYEERMTVGGR 480

Query: 305 TF--LIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
               LI    +    G   G+  +G  V               +I+ QKA E  L     
Sbjct: 481 QVDVLISKAALLKSDGSLQGL--VGTIV---------------DISSQKAAERALLLAKE 523

Query: 363 ITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQL 421
           + E   R+K + LA MSHEIR+P+ G++ M +++ +++LD  QR+ L ++ +S D +L +
Sbjct: 524 VAESASRSKSEFLANMSHEIRTPMNGILGMTDLVLDSELDIHQRKYLEIVKASADALLGI 583

Query: 422 INDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIG 480
           INDILD SK+E+G++ LE+  F  R++++  ++  A   Q   L L  D+   +P  ++G
Sbjct: 584 INDILDFSKIEAGMLTLESIPFNLRQLMQESMRALAVRAQVSGLELVLDVDPALPQTLLG 643

Query: 481 DVLRIRQILTNLISNAIKFTPEGKVGI 507
           D  R+RQ+LTNL  NAIKFTP G+V +
Sbjct: 644 DPGRLRQVLTNLAGNAIKFTPRGEVTV 670



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 24/160 (15%)

Query: 841  SQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            S +P+ +   V E  P     ILLVEDN +N  +A  ++   GH +    NG +A+    
Sbjct: 902  SATPAVTQHGVREGTPSLD--ILLVEDNAMNRELATVLLSHAGHRVTHAANGQQALDCQA 959

Query: 901  CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
              ++D+ILMD+ MP M G +AT  IR  E  G                        R  I
Sbjct: 960  SGHFDMILMDLQMPEMGGFEATAQIRQREAQG----------------------MARSVI 997

Query: 961  IAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            IAMTA+A     E C A GMD ++SKP      +  +EQ+
Sbjct: 998  IAMTASAFEGDRERCIAGGMDDYLSKPFRTAAFQSLIEQH 1037



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 48/83 (57%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI  +    +F  + Q      R++GGTGLGL+I ++LV +MGG + ++S++  
Sbjct: 688 VRDTGIGIAADMQEAVFDAFQQEDGSTTRRFGGTGLGLSITRRLVSMMGGSIGLSSELGK 747

Query: 656 GSTFTFILPYQVSPIEENSDDPD 678
           GS+FT  L   +   +     PD
Sbjct: 748 GSSFTVDLALNIGEDQPCLTPPD 770



 Score = 42.4 bits (98), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 25/133 (18%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV-HAVQCQNYDLILMDVCMPVMDGLK 920
           +LL++DN  ++ + + + +  G ++    +G  A+ H       D I+MD  MP M+G  
Sbjct: 778 LLLIDDNSSSLSILRQIFEGSGAAVTACTSGEAALEHCRSALPVDCIIMDFAMPGMNGF- 836

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
                      G   A A      A+P      H+  +PI+ ++++     A  C   G+
Sbjct: 837 -----------GTASALA------ALP------HWSEVPIVMLSSSGNLADAARCRELGI 873

Query: 981 DSFVSKPVTFQKL 993
           + ++ KP + ++L
Sbjct: 874 EGYLLKPASPEEL 886


>gi|299529745|ref|ZP_07043180.1| Proline sensor PrlS [Comamonas testosteroni S44]
 gi|298722263|gb|EFI63185.1| Proline sensor PrlS [Comamonas testosteroni S44]
          Length = 1079

 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 106/177 (59%), Gaps = 13/177 (7%)

Query: 334 VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAE 393
           V  R +M + +E+  VQ  +  E   T             LA+MSHEIR+PL G++   E
Sbjct: 463 VSARAEMERTQEQAKVQAQRAVEAKST------------FLASMSHEIRTPLYGLLGTLE 510

Query: 394 ILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL 453
           IL+ T L  EQR+ +  + +S  ++ QLI+DILD++K+ESG + LEAA F P E+V+  +
Sbjct: 511 ILAMTPLSDEQRRHIDHIQNSSGILQQLISDILDVTKIESGQLALEAAAFDPGELVQRAV 570

Query: 454 QTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            + A A  QK L++ G +   VP  V GD  RIRQILT+L+ NAIKFT  G V  +L
Sbjct: 571 ASCAPAGEQKGLVIYGCVDTSVPACVYGDAGRIRQILTSLLGNAIKFTNAGHVITRL 627



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 26/132 (19%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           IL+ EDN IN +  +  ++QLG  + +  +G +A+      N+DL+L D+ MP M+G + 
Sbjct: 842 ILVAEDNPINQITLRDQLEQLGCQVTIAPDGADALALWSINNFDLLLTDLNMPRMNGYEL 901

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
              +R            E G+                PII +TANA+ E    C A GM+
Sbjct: 902 ASTLR------------ERGVS--------------TPIIGVTANAMKEEETRCRAAGMN 935

Query: 982 SFVSKPVTFQKL 993
           S++ KP+  + L
Sbjct: 936 SWLVKPIDLRSL 947



 Score = 43.9 bits (102), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+G GI       LF  + +++   +   GG G+GLA+  +L  LMG  L VTS+   
Sbjct: 643 VVDSGPGIGPEERKRLFEPFYRINGG-SHTVGGMGIGLALSARLARLMGSELHVTSEPGL 701

Query: 656 GSTFT 660
           GS+F+
Sbjct: 702 GSSFS 706


>gi|418055382|ref|ZP_12693437.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans 1NES1]
 gi|353210964|gb|EHB76365.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans 1NES1]
          Length = 650

 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 105/171 (61%), Gaps = 2/171 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I V++  E EL +  +  E   RAK + LA+MSHEIR+P+ G++ M  ++ +T+LD EQ
Sbjct: 217 DITVERGVERELKEARNQAETASRAKSRFLASMSHEIRTPMNGILGMISLMRDTQLDAEQ 276

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAAS-LQKI 463
           R    ++  S   +L LI+DILD SK+E+G + L +  F  +  V   +Q  A S   K 
Sbjct: 277 RTCARIVEDSTRALLNLIDDILDFSKIEAGKLDLASRAFSLKACVAQAMQLLAPSAAAKR 336

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
           L     + +DVP  V GD +R+RQI+ NL+SNAIKFT +G +G+ L +V E
Sbjct: 337 LSFTSTVTNDVPEWVQGDEMRVRQIVLNLLSNAIKFTEKGGIGVCLSLVDE 387



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 24/147 (16%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV------QCQNYDLILMDVCMPV 915
            +L+ EDN IN ++A+ ++ + G +  +V +G  A+ A       +   +DLILMDV MP 
Sbjct: 512  VLIAEDNPINALLARKIVARAGGTSTIVGDGRLAIAAAWEMLQRRQPAFDLILMDVLMPG 571

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            +DGL A R I+       +D    +G+    P           PI+A+TANA +E  E C
Sbjct: 572  VDGLTAARSIKEL-----FDERKHSGL--VCP-----------PIVALTANAFAEDRERC 613

Query: 976  FANGMDSFVSKPVTFQKLKECLEQYFP 1002
            +A GMD +++KP   ++L E L ++ P
Sbjct: 614  YAAGMDDYLAKPFEARQLHEVLLRWMP 640



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG+G P   +  LF ++ Q +A   R  GGTGLGLAI K+L   MGG +   S    
Sbjct: 401 VTDTGVGFPAEFMAHLFDEFEQSAATMVRHPGGTGLGLAISKRLAHAMGGDIFAESNPEQ 460

Query: 656 GSTFTFILPYQVS--PIEENSDDPDDLSDMADQDSVTDDVTAG 696
           G++FT +L + V+  P   +   P     +A  DS+  D++A 
Sbjct: 461 GASFTVVLRFHVAERPESYSPIVPAPRLPLACNDSLAMDISAA 503


>gi|452966229|gb|EME71242.1| sensor protein gacS [Magnetospirillum sp. SO-1]
          Length = 965

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 96/166 (57%), Gaps = 28/166 (16%)

Query: 840  ISQSPSSSSAEVPETKPKP-----KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            +S  P+ S+    E    P     + +IL+ EDN +N  VA  ++++LGHS+DVV +G E
Sbjct: 692  LSDRPAHSAGHEQEETGAPESAGRRLRILVAEDNPVNQQVALGLLRKLGHSVDVVGDGAE 751

Query: 895  AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
            A+ AV+   YDL+LMDV MP MDGL+ATR IR+                 A P++     
Sbjct: 752  ALEAVRLLPYDLVLMDVQMPGMDGLEATRAIRAL----------------ATPAA----- 790

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
              RIPI+AMTANA+    + CF +GM+ ++SKP+  +KL E L  Y
Sbjct: 791  --RIPIVAMTANAMRGDDQICFDSGMNGYISKPIDRRKLAEALAPY 834



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 10/221 (4%)

Query: 292 REITFETE-LFGSKTFL-IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAV 349
           R+  + T  + G   FL +  +PVF  +GE +G      D+T+++   E  A+L+   A 
Sbjct: 253 RDFVYRTRNMSGPGRFLRVNGKPVFGPAGEFLGYRGTASDITEEI---EAEARLK---AT 306

Query: 350 QKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
           Q   E  L       E   R K + LATMSHEIR+P+ GV+ M  +L +T+L  EQR   
Sbjct: 307 QAEMERRLRDAKEAAEAGNRIKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFA 366

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLE 467
             +  SG+ +L +INDILD SK+E+G + L+  +F    +V+ V+   A     K + + 
Sbjct: 367 ETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIA 426

Query: 468 GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
             I   + + V  D  R+RQ+L NL  NA+KFT +G V I+
Sbjct: 427 SLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIE 467



 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 58/105 (55%), Gaps = 6/105 (5%)

Query: 593 RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
           R DV D+GIGI   A   LF  + QV A  AR+YGGTGLGLAI K+L ELMGG + + S 
Sbjct: 481 RFDVRDSGIGIAPEAQHRLFSMFSQVDASTARRYGGTGLGLAISKKLAELMGGEVGMESA 540

Query: 653 VHCGSTFTFILPYQVSPIEENSDDPDDLSD----MADQDSVTDDV 693
              GS F   LP  +  +   S  P DL +    + D + V  D+
Sbjct: 541 PGQGSRFWITLPLDL--LAPQSLAPPDLRNRRVLVVDDNPVNRDI 583


>gi|170077877|ref|YP_001734515.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885546|gb|ACA99259.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 1208

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 160/306 (52%), Gaps = 42/306 (13%)

Query: 214 SQILKRADNFLHFVLQNAPVVMGHQDKELRY-----RFIYNHFPSLHEEDILGKTDVEIF 268
           SQ L +    L  ++QN PV M   DK+L Y     +++ ++   L E+ ++G++  E+F
Sbjct: 425 SQALDQERRQLRQLIQNMPVAMAMLDKKLCYVAHSHQWLVDY--QLGEKTLVGRSHREVF 482

Query: 269 SGAGVKESQDFKREVLEKGLPAKREITFETELF----GSKTFLIY-VEPVFSKSGETIGV 323
               V   +D+++  L+  L   + IT E + +    G K +L + V+P + +  +  GV
Sbjct: 483 ----VNLQEDYQQH-LQTAL-GGQVITCEEDCYVQHDGKKQYLKWTVQPWYHRENQVGGV 536

Query: 324 NYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRS 383
             +  ++ D V  RE        +A  + K +                  LA MSHEIR+
Sbjct: 537 VIVTQNINDLVEGREA------ALAASRLKSS-----------------FLANMSHEIRT 573

Query: 384 PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
           P+ G++ +AE+L  T+L+ +Q+  +  +  S + +L +INDILD SK+E+G M+LE+   
Sbjct: 574 PMNGILGIAELLQTTQLNPQQQDFIKTLSQSANHLLYVINDILDFSKLEAGEMRLESVPL 633

Query: 444 RPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
           +  + V+ V +  A   Q K + L   I   +   V GD +R+RQILTNL+ NAIKFT  
Sbjct: 634 QIIDCVESVAELLAIQAQTKQVELITTIDPQLGGTVTGDSMRLRQILTNLVGNAIKFTHR 693

Query: 503 GKVGIK 508
           G V I+
Sbjct: 694 GSVVIR 699



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 28/145 (19%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            P  +IL+VED  IN  V  + ++ +G  SID V+NG EA+  +Q + YDLILMD  MP +
Sbjct: 946  PDIQILVVEDTPINQTVILNQLEIIGFRSIDCVSNGREALTQLQQRTYDLILMDCLMPEL 1005

Query: 917  DGLKATRLIRS--FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE 974
            DG   T +IR    EDT                            IIAMTANA+    E+
Sbjct: 1006 DGYTTTEMIRQQEQEDTHQL-------------------------IIAMTANAMKGDREK 1040

Query: 975  CFANGMDSFVSKPVTFQKLKECLEQ 999
            C A GMD +++KP + + L++ +++
Sbjct: 1041 CLAAGMDGYIAKPTSIKTLRQVIDK 1065



 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 573 GTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLG 632
           G+ V     M ED EA+V ++ +V DTGIGI +     LFR + QV     R+YGGTGLG
Sbjct: 694 GSVVIRALPMAED-EASVLVKFEVIDTGIGIDKADQAKLFRSFSQVDPSTTREYGGTGLG 752

Query: 633 LAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
           LAI K LV LM G + + S    GSTF F   +Q
Sbjct: 753 LAIAKHLVSLMAGDIGLESSPGQGSTFWFTARFQ 786


>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
 gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
          Length = 1819

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 117/186 (62%), Gaps = 11/186 (5%)

Query: 325  YMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSP 384
            ++G ++ ++ R  +++ ++ +E+A+ + +  E ++            + LATMSHEIR+P
Sbjct: 1117 WIGAEI-ERDRYLKQLQRISDELALARDQALEASRL---------KSEFLATMSHEIRTP 1166

Query: 385  LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
            L  V+ M+EIL +T L+ EQ     ++  SG  +L +INDILD SK+E+G M LE+ +F+
Sbjct: 1167 LNAVIGMSEILLDTPLNEEQADFARIIRDSGKSLLSIINDILDFSKIEAGRMTLESVEFQ 1226

Query: 445  PREVVKHVLQTAAASLQKI-LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
               +V  V++  A+ +QK  L L G IA DVP  V+GD +R+RQ+L NL+ N +KFT +G
Sbjct: 1227 LLPLVDSVIEMFASIVQKKNLHLFGWIAPDVPNIVVGDPVRLRQVLINLVGNGVKFTEQG 1286

Query: 504  KVGIKL 509
             V + +
Sbjct: 1287 HVSVSI 1292



 Score = 99.4 bits (246), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 76/146 (52%), Gaps = 24/146 (16%)

Query: 854  TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV--HAVQCQNYDLILMDV 911
             +P  +  +LL EDN  N  +A   +K+LG+  D+V  G +A+  +    + Y  ILMD 
Sbjct: 1535 VEPDGEKIVLLAEDNSANQRLATVQLKRLGYQADLVTTGEQALEMYMRHPERYLAILMDC 1594

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MPVMDG +ATR IR FE T                        + IPIIAMTANA+   
Sbjct: 1595 QMPVMDGFEATRRIREFEHTRQ----------------------RHIPIIAMTANAMQGD 1632

Query: 972  AEECFANGMDSFVSKPVTFQKLKECL 997
             E C   GMD ++SKPV+ Q+L E L
Sbjct: 1633 REACIQAGMDDYISKPVSIQRLGEVL 1658



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 56/94 (59%)

Query: 576  VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
            VS   S+ E LE  V +R +V+DTGIG+ E A   LF  + Q      R++GGTGLGLAI
Sbjct: 1288 VSVSISLQERLENEVILRVEVHDTGIGLSETARKRLFTPFTQADGSMTRRFGGTGLGLAI 1347

Query: 636  CKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSP 669
             K LVELMGG + V S    GSTF F +   V P
Sbjct: 1348 SKSLVELMGGEIGVESVEGQGSTFWFTVTLSVRP 1381


>gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1255

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 110/179 (61%), Gaps = 2/179 (1%)

Query: 339 KMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSN 397
           ++  L +++  ++ +  +L     + E   +AK Q +A+MSHEIR+P+ G++ M E+L  
Sbjct: 565 RVYGLLDDVTDERERALQLQAARDVAEAASQAKSQFMASMSHEIRTPMNGILGMTELLLG 624

Query: 398 TKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA 457
           T+LD  QR+    +  SG+ +L++IND+LD SK+E+G ++L    F  R +++  L   A
Sbjct: 625 TRLDDRQRRFAQAVYRSGENLLEIINDVLDFSKIEAGRLELAPTDFNLRTLIEDTLDLLA 684

Query: 458 A-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
             + +K L L      DVP  V+ D LR+RQ+LTNL++NA+KFT  G+V + L  +P P
Sbjct: 685 PRAHEKGLELSFRETGDVPANVLADPLRLRQVLTNLVANAVKFTEHGEVTVDLRFLPRP 743



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 47/71 (66%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIG+    LP LF  + Q     AR+YGGTGLGLAI +QLVELMGG++ V S+   
Sbjct: 755 VRDTGIGMAAELLPRLFTAFTQAHGGMARRYGGTGLGLAISRQLVELMGGQIDVVSQPGV 814

Query: 656 GSTFTFILPYQ 666
           GS F F + ++
Sbjct: 815 GSEFRFTMTFE 825



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 27/162 (16%)

Query: 846  SSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYD 905
            ++S  V     + + ++L+VEDN +N  V   M+ +LG  + V    ++ +  +  Q  D
Sbjct: 965  TASRGVEPVDAQVRAQVLVVEDNPVNQEVMGQMLHRLGCRVRVAGTALDGLRVLCEQPVD 1024

Query: 906  LILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK-----RIPI 960
            L+LMD+ MP MDG++A   IR                       G S+ FK      +P+
Sbjct: 1025 LVLMDIQMPGMDGIEALHWIR----------------------RGESSRFKLRTPANLPV 1062

Query: 961  IAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            +A+TANAL    E     G D+++SKP    +L   L+   P
Sbjct: 1063 VAVTANALDGDEERFLGFGFDAYLSKPYRQSQLLGILQGVVP 1104


>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 1191

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 103/167 (61%), Gaps = 12/167 (7%)

Query: 355 TELNKTIHITEETMRAKQ-----------MLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
           T++ +  HI+EE  +AK             LA MSHEIR+P+ GV+ M E+L +T LD E
Sbjct: 518 TDVTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDTTLDAE 577

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-K 462
           Q++ L ++ SS + +L++INDILD SK+E+G M +E+  F     V   L+T       K
Sbjct: 578 QQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLRAHDK 637

Query: 463 ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            L +  D+A DVP  ++GD  R+RQ+L N++ NAIKFT  G+V +++
Sbjct: 638 GLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTERGEVVLRI 684



 Score =  102 bits (255), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 24/142 (16%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            P   ILLVED+ IN  +A +++++ GH +DV  NG  A+  +  + YDLILMD+ MPVMD
Sbjct: 933  PVLDILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDMLPKRPYDLILMDMMMPVMD 992

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            GL+ATR IR+ E                          +RIPIIAMTANA+      C  
Sbjct: 993  GLEATRHIRANE------------------------RGRRIPIIAMTANAMESDRNLCLE 1028

Query: 978  NGMDSFVSKPVTFQKLKECLEQ 999
             GMD +++KP+  ++L++ + Q
Sbjct: 1029 AGMDDYIAKPIKSEELQQKILQ 1050



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 42/66 (63%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP N L ++F  + Q  +   RKYGGTGLGL IC +LVE MGG + V S    
Sbjct: 700 VSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVESTPGQ 759

Query: 656 GSTFTF 661
           GS F F
Sbjct: 760 GSVFHF 765


>gi|328856936|gb|EGG06055.1| hypothetical protein MELLADRAFT_43665 [Melampsora larici-populina
           98AG31]
          Length = 1113

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/150 (44%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ G++ M +I   T+L R+QR+ L ++ +  + +L +I+D+LDLSK+
Sbjct: 580 EFLANMSHEIRTPMNGIIGMTQITLATELTRQQRENLTIVHAMANNLLLIIDDVLDLSKI 639

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G M +E   F  R  V  VL++ A  +L   L L  DIA DVP  V+GD  R+RQ++T
Sbjct: 640 EAGRMTIEKVPFALRTAVFGVLKSLAVKALTSNLQLVFDIAPDVPDFVVGDPFRMRQVIT 699

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKE 520
           NLI NAIKFT  G VG+   V  + P   E
Sbjct: 700 NLIGNAIKFTSGGHVGLSCEVAYQDPITDE 729



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 72/128 (56%), Gaps = 21/128 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KILL EDN +N  VA  ++   GH ++VV+NG  AV A     YDL+LMDV MP M GL+
Sbjct: 955  KILLAEDNHVNQKVATKLLDMGGHKVEVVDNGARAVEAATKNTYDLVLMDVSMPTMGGLE 1014

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT LIR  E+                      +H +R+PIIA+TA+A+    E C   GM
Sbjct: 1015 ATSLIRRHEE---------------------EHHLERVPIIALTAHAMIGDRERCIDAGM 1053

Query: 981  DSFVSKPV 988
            D +V+KP+
Sbjct: 1054 DEYVTKPL 1061



 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 47/82 (57%), Gaps = 6/82 (7%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V+DTGIGI  + L  +F  + Q      RKYGGTGLGL I K+LV LMGG L V S+ + 
Sbjct: 736 VFDTGIGIKPDKLDLIFDTFCQADGSTTRKYGGTGLGLTISKRLVNLMGGTLWVESEYNY 795

Query: 656 GSTFTFILPYQVSPIEENSDDP 677
           GS F F     V P     DDP
Sbjct: 796 GSKFFF--SITVKP----DDDP 811


>gi|254463944|ref|ZP_05077355.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium Y4I]
 gi|206684852|gb|EDZ45334.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium Y4I]
          Length = 755

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 110/201 (54%), Gaps = 2/201 (0%)

Query: 315 SKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-M 373
           SK G T  +    + + D   + +    +  +I   K  E EL K     EE  RAK   
Sbjct: 324 SKDGRTFWLETNQVPMLDACGRVDSYVAIERDITAAKLHEQELEKARIAAEEGARAKADF 383

Query: 374 LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433
           LATMSHEIR+P+ GV+ MA++L ++ L+ EQ    G ++SS D +L LIND+LD+SK+++
Sbjct: 384 LATMSHEIRTPMNGVIGMAQLLRDSGLNEEQELYAGAILSSADTLLALINDVLDVSKMDA 443

Query: 434 GVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNL 492
             + L    F PR   +  ++   A  + K L L  DI   VP  + GD  RIRQIL NL
Sbjct: 444 EGVSLSCTDFDPRACFEDTMRLLKAQAEAKGLDLLLDIKACVPARLHGDDRRIRQILLNL 503

Query: 493 ISNAIKFTPEGKVGIKLYVVP 513
             NAIKFT  G+V + L   P
Sbjct: 504 AGNAIKFTERGQVQVTLDAEP 524



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 25/142 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+ EDN +N ++ +  ++     +    NG EAV   +    D+ILMD+ MP MDGL 
Sbjct: 631  RVLVAEDNAVNRVLLEKFLQPTPAEVVFAQNGREAVAQFEAFAPDIILMDMSMPEMDGLD 690

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR IR+                Q  P+           I+A+TANA     E C A GM
Sbjct: 691  ATRAIRAR--------------AQTQPA-----------IVALTANAFDSDREACLAAGM 725

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D F+SKPV   KL + L    P
Sbjct: 726  DEFMSKPVNRGKLLDLLVHLAP 747



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 45/68 (66%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP   L  +F ++ Q  A  +R++GGTGLGLAI ++L E MGG ++V S +  
Sbjct: 535 VADTGIGIPREMLSKVFERFSQADAAISRRFGGTGLGLAISRRLAEAMGGSISVASDLGI 594

Query: 656 GSTFTFIL 663
           GS FT  L
Sbjct: 595 GSCFTVRL 602


>gi|445495785|ref|ZP_21462829.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
 gi|444791946|gb|ELX13493.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
          Length = 952

 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 116/190 (61%), Gaps = 4/190 (2%)

Query: 329 DVTDQVRKRE-KMAKLREEIAVQKAKETE-LNKTIHITEETMRAKQ-MLATMSHEIRSPL 385
           D+  QV  R+  +A+ R+E+  Q    TE L K  +  E   +AK   LATMSHEIR+P+
Sbjct: 235 DMLAQVEARDGALAQYRDELERQVGVRTEQLEKAKNAAEAASQAKSAFLATMSHEIRTPM 294

Query: 386 TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445
            GV+ M E+L  T+L  +QR    ++  SG+ +L +INDILD SK+E+G + +E   F  
Sbjct: 295 NGVLGMTELLLATRLSEQQRHYTSMVKRSGEHLLVIINDILDFSKIEAGKLTVEYIHFNF 354

Query: 446 REVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK 504
           RE++  +    +   Q K + LE  IA D+PI + GD  R+RQ++ NL+ NAIKFT  GK
Sbjct: 355 RELLDDIDNVFSPQAQAKGIRLELAIAYDIPIAICGDPNRLRQVIFNLLGNAIKFTDSGK 414

Query: 505 VGIKLYVVPE 514
           + +K+ VV E
Sbjct: 415 ITVKVAVVHE 424



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 80/150 (53%), Gaps = 20/150 (13%)

Query: 852  PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
            P  + + + K+LL EDN +NV VA +M++ LG  +    NG EA+H+VQ   +DLILMD 
Sbjct: 676  PAPRARKRRKVLLAEDNPVNVEVASAMLEGLGLEVSRACNGEEALHSVQAGEFDLILMDC 735

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MPVMDG  AT  IR  E                          + +PIIA+TANAL   
Sbjct: 736  QMPVMDGFAATTEIRRHEL--------------------QRGRARNLPIIAITANALQGD 775

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             E C A GMD ++SKP T Q L + + ++ 
Sbjct: 776  RESCLAAGMDDYLSKPFTQQALGQTIARWI 805



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           TV +R +V+DTGIG+   A   +F  + Q      RK+GGTGLGLAI KQLVELMGG + 
Sbjct: 428 TVGLRFEVHDTGIGVSSEARARIFDSFSQADGSTTRKHGGTGLGLAISKQLVELMGGTIG 487

Query: 649 VTSKVHCGSTFTFILPYQVSPIEENSDDP 677
           V   +  GS F F + +    I+   DDP
Sbjct: 488 VDHALTQGSIFWFAVNFDKRRID--VDDP 514


>gi|326795319|ref|YP_004313139.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326546083|gb|ADZ91303.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 1479

 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/181 (43%), Positives = 110/181 (60%), Gaps = 6/181 (3%)

Query: 339 KMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSN 397
           +M  +  +I  +K  E  L K     E T +AK   LATMSHEIR+PL GV+ MAE++S+
Sbjct: 794 RMIGVNLDITTRKETELVLQKAKEQAELTSKAKSDFLATMSHEIRTPLNGVLGMAELMSH 853

Query: 398 TKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV---VKHVLQ 454
           T L  EQ   L V+  SG+ +L+LIN+ILD SK+E+G + LE+  F   +    + H+L 
Sbjct: 854 TDLSPEQLTQLDVIRDSGEGLLELINEILDFSKIEAGHLVLESIDFNLEKAIFDIAHLLI 913

Query: 455 TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
             A      L++E       P  ++GDV RI+QI+TNL+SNAIKFT EG+V I++   P 
Sbjct: 914 VKAEDKGIELLVE--FEQRCPRMLVGDVYRIKQIITNLVSNAIKFTSEGEVVIRVSGKPL 971

Query: 515 P 515
           P
Sbjct: 972 P 972



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  V DTGIGI E+    LF+ + Q  +   R+YGGTGLGLAI  QL  LM G + V S
Sbjct: 978  LRLSVSDTGIGIQESVQRNLFKAFTQADSSTTRQYGGTGLGLAITSQLTNLMDGTIEVES 1037

Query: 652  KVHCGSTF--TFILP 664
            ++  GS F  + +LP
Sbjct: 1038 QLGKGSCFSVSMVLP 1052



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 22/143 (15%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            K   K+L+ ED + N+ V + M+   G  +    NG EA+   +    DLI MD+ MPV+
Sbjct: 1220 KYSGKVLVAEDMQANMAVVRGMLVTFGVDVIEAMNGQEAIDKWRDHKPDLIFMDLHMPVL 1279

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG  A R IR  E                  S G      R+PI A+TA+AL E   +  
Sbjct: 1280 DGFAAMRRIRYEEQI----------------SGG------RVPIYALTADALPERLLDVQ 1317

Query: 977  ANGMDSFVSKPVTFQKLKECLEQ 999
              G D  +SKP     L   ++Q
Sbjct: 1318 RAGGDGLISKPFQRNDLVTAIDQ 1340


>gi|298528782|ref|ZP_07016186.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512434|gb|EFI36336.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1037

 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 151/296 (51%), Gaps = 38/296 (12%)

Query: 227 VLQNAPVVMGHQDKELRYRFI----YNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKRE 282
           +LQ  P ++   D E    F+    Y     + +  I G++         +  +Q+   +
Sbjct: 530 ILQAVPDLIVRTDLEGIITFVNELAYPGLSYIPQASIYGRSLFSFIDARDLPRAQENALK 589

Query: 283 VLEKGL-PAKREITFE------TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVR 335
            LEK + P +  + FE      TE+ G+         V+ K    +G+ Y+  D+TD+ R
Sbjct: 590 RLEKNIGPQEYRLNFEEGISIDTEINGA--------VVYDKESMPVGMVYVIRDITDRKR 641

Query: 336 KREKMAKLREEI-AVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEI 394
            ++++ K +E+  A  +AK                  + LA MSHE+R+P  G++ M ++
Sbjct: 642 DKKELLKAKEQAEAANQAK-----------------SRFLANMSHELRTPFNGIMGMMQL 684

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
           L  T LD EQ++ + + I S     +L++DILDLS VE+G M +  ++F   E +  +  
Sbjct: 685 LQTTTLDEEQQEYVDMAIKSSQRFARLLSDILDLSSVETGRMSIFNSEFDLGEALGSIHD 744

Query: 455 TAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
              AS  +K + LE    DDVP +VIGD +R++QIL  L+SNA+KFT +G V I+L
Sbjct: 745 IFDASAREKGVFLEYLPGDDVPAKVIGDAVRVKQILITLVSNALKFTEKGVVEIRL 800



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 21/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILL ED  +N     +++K+ GH++ +  NG +AV      ++D +LMD+ MP M GL+A
Sbjct: 912  ILLAEDEPLNQKFMVTLLKKFGHNVVLAPNGKQAVEEFFRHDFDCVLMDIQMPEMTGLEA 971

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR                     S+GS    + +PIIA+TA+  S   E     GMD
Sbjct: 972  TRAIRE------------------AKSAGSK---RDVPIIAVTAHTQSGDRERFLDAGMD 1010

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++ KPV+ Q  +   +++F
Sbjct: 1011 DYIGKPVSSQDFQRVFDKFF 1030



 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 50/79 (63%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V I+  V DTGIGIPE+ L  LF  + Q+   + RK+ G GLGL+I K+LVELM G + +
Sbjct: 811 VRIKFAVSDTGIGIPEDQLKNLFTPFEQLDGSYTRKHQGAGLGLSIVKRLVELMNGNIDI 870

Query: 650 TSKVHCGSTFTFILPYQVS 668
            S    G+T   +LP+ +S
Sbjct: 871 DSLPGEGTTVHVVLPFGLS 889


>gi|261405183|ref|YP_003241424.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261281646|gb|ACX63617.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 642

 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/150 (44%), Positives = 96/150 (64%), Gaps = 2/150 (1%)

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           E+T +AK + LA MSHEIR+P+ GV+ M +++  T+LD EQR+ + ++  SG  +L +IN
Sbjct: 259 EKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETELDEEQREYVQIIKKSGTTLLNIIN 318

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDV 482
           DILD SK+ESG  +L    F  R  +   L      +L K + +   +A DVP +V GDV
Sbjct: 319 DILDFSKIESGRTELVEETFSLRTALSETLNMILPKALDKNIEVTTSVASDVPNQVYGDV 378

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            ++RQ+L NL+SNAIKFTP G V I +  V
Sbjct: 379 TKLRQVLMNLLSNAIKFTPNGAVSISVQCV 408



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 79/141 (56%), Gaps = 23/141 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KIL+ EDN++N +V K M+++LG++   V NG+EAV A +   YD++ MD+ MP MDG++
Sbjct: 517  KILIAEDNEVNQLVLKKMIEKLGYNSTTVLNGLEAVEAFKRYPYDMVFMDIQMPFMDGME 576

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            A +LI+                E A P         +  I+A+TA+A+    E+    GM
Sbjct: 577  AVQLIK----------------ESAPPD-------HQPYIVAVTAHAIKGDREKYLGMGM 613

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +VSKPV+   +   ++++ 
Sbjct: 614  DEYVSKPVSLNVISAIIDRFL 634



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 11/108 (10%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I+  V DTGIG+P   +  LF  + QV     R+  GTGLGLAICK+LV+LMGG +    
Sbjct: 417 IQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMGGDIWYER 476

Query: 652 KVH-CGSTFTFILPY----------QVSPIEENSDDPDDLSDMADQDS 688
             +  GS FTF + +          +   + EN  D  DL  +  +D+
Sbjct: 477 NPNQQGSVFTFTVDFSFNANAGNMPEAGTVHENHSDGSDLKILIAEDN 524


>gi|357024389|ref|ZP_09086542.1| hybrid sensory histidine kinase [Mesorhizobium amorphae CCNWGS0123]
 gi|355543743|gb|EHH12866.1| hybrid sensory histidine kinase [Mesorhizobium amorphae CCNWGS0123]
          Length = 1412

 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 114/426 (26%), Positives = 183/426 (42%), Gaps = 60/426 (14%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIPE  L  +F K+ QV     R++ GTGLGLAI  +LVELM G + V S    
Sbjct: 1016 VTDTGIGIPEEKLKAVFEKFNQVDTSSTRRHEGTGLGLAITSRLVELMEGEIGVESAEGK 1075

Query: 656  GSTFTFILPYQVSPIEENSDD---PDDLSD----MADQDSVTDDVTAGFFQFQPRTLGSL 708
            GS  TF     +   E+       P D++     + D ++V   + +   Q    T  S 
Sbjct: 1076 GS--TFWFTVTLPRAEQQGGQRIMPVDVTGARVLIVDDNAVNRSILSE--QMASWTFDSC 1131

Query: 709  FSSNGTSRSKKLLPNSIGFASAHKVN-GFSETSYSFPSNNRQKETAPLEDACSVAEVAET 767
             + +G    K L+      A+A+ V        Y  P+ +  +    + +   +A     
Sbjct: 1132 AAESGAEGLKVLIA-----AAAYGVPVDCVVLDYQMPNMSGAEMARIVRNTAGLAHTPII 1186

Query: 768  -LSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNE 826
             L+  + S +++   +   +    K               +   HSE    ++  +    
Sbjct: 1187 MLTSVDQSLANTSYRDLGIDAQLIKPARSSVLLETLVATIQRHHHSEEANRVLPLASGGG 1246

Query: 827  PQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPK-----------ILLVEDNKINVMVA 875
             Q +   Q         PSS+++   + +P P              IL+ EDN++N MV 
Sbjct: 1247 AQALSTAQ---------PSSTASVRAQLQPPPVRARVRATGERGLDILVAEDNEVNQMVF 1297

Query: 876  KSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
              ++ + G+  ++V NG +A+ A    N  +ILMDV MP M+GL+AT  IR  E+     
Sbjct: 1298 TQILGETGYGFEIVGNGRKALDAFGRLNPRMILMDVSMPEMNGLEATAAIRRLEE----- 1352

Query: 936  AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKE 995
               E G                +PI+ +TA+AL    E C   GMD ++ KP++ + L E
Sbjct: 1353 ---ETGTH--------------VPIVGVTAHALKGDRERCLEAGMDDYLPKPISPRALLE 1395

Query: 996  CLEQYF 1001
             LE++ 
Sbjct: 1396 KLERWI 1401



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 157/309 (50%), Gaps = 30/309 (9%)

Query: 219  RADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVEIFSGAG-VK 274
            R +     ++ N PV +  +  +LR  ++   +       +++  GKTDVEIF   G   
Sbjct: 725  RENEVFRSLIDNVPVSIYAKRSDLRQFYVNKGWCDLTGFTKDEATGKTDVEIFGPDGEAF 784

Query: 275  ESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETI---GVNYMGMDVT 331
             + D    VL  G   + E T  T   GS      V   F++ G  I   G  Y+    T
Sbjct: 785  VASDLA--VLRTGETQEIEETV-TLADGS------VRHQFARKGAMIASDGSLYLIGSTT 835

Query: 332  DQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSM 391
            D    +++ A+L E  A Q+A   +  K+           + LA MSHEIR+P+ GV+ M
Sbjct: 836  DITELKQREAELSE--ARQRAVLADRAKS-----------EFLANMSHEIRTPMNGVLGM 882

Query: 392  AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
            AE+L+ + LD +Q+    +++ SG+ +L +INDILD SK+++G + L+ A F   E ++ 
Sbjct: 883  AELLAKSDLDPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIED 942

Query: 452  VLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
            V    +  + +K L L   +   +  + IGDV R+RQI+TNL+ NA+KFT EG V + + 
Sbjct: 943  VATLVSTRAKEKDLELIVRVQPGLESQFIGDVGRVRQIVTNLLGNAVKFTDEGHVLVDVT 1002

Query: 511  VVPEPPFAK 519
             V  P   K
Sbjct: 1003 GVRVPAGTK 1011


>gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1099

 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 39/202 (19%)

Query: 799  SWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKP 858
            ++   P  +ST      R +  +    +P    E    PD  ++                
Sbjct: 806  AFLHKPLRQSTLLDTIGRVLGLSGPEEQPAAPAEEHNAPDSTAK---------------- 849

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            + +IL+ EDN +N  VA  ++++LGH++DVV +G EA+ AV+   YD++LMDV MP MDG
Sbjct: 850  RLRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVLMDVQMPEMDG 909

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            L+ATR IRS        A+A A                RIPI+AMTANA+    + CF  
Sbjct: 910  LEATRAIRSL-------ASAAA----------------RIPIVAMTANAMRGDDQMCFDA 946

Query: 979  GMDSFVSKPVTFQKLKECLEQY 1000
            GMD ++SKP+   KL E L +Y
Sbjct: 947  GMDGYISKPIDRHKLAEALAKY 968



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 110/202 (54%), Gaps = 3/202 (1%)

Query: 316 KSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QML 374
           + G  + V Y+   V D+  +   +   R+ I  ++  E +L +     E   R K + L
Sbjct: 409 RDGSPLPVEYIASPVMDKGNQVGVVLGFRD-ITQRRLVERQLREAKEAAEAGNRTKSEFL 467

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           ATMSHEIR+P+ GV+ M  +L +TKL  EQR     +  SG+ +L +INDILD SK+E+G
Sbjct: 468 ATMSHEIRTPMNGVIGMTGLLLDTKLTEEQRHFAETIRDSGESLLTVINDILDFSKMEAG 527

Query: 435 VMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493
            + L+  +F    +V+ V+   A     K + +   I   + + V  D  R+RQ+L NL 
Sbjct: 528 KLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLG 587

Query: 494 SNAIKFTPEGKVGIKLYVVPEP 515
            NA+KFT +G V I++ ++  P
Sbjct: 588 GNAVKFTEKGGVSIEVTLLERP 609



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 588 ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
           A   +  DV DTGIGIP  A   LF  +MQV A  AR+YGGTGLGLAIC++L ELMGG +
Sbjct: 611 AQPMVHFDVRDTGIGIPPEAQGRLFSMFMQVDASTARRYGGTGLGLAICRRLAELMGGEV 670

Query: 648 TVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLS 681
            + S+   GS F   +P ++  +   S  P DL+
Sbjct: 671 GLESQPGKGSRFWMSVPMEL--LAPQSAAPPDLT 702


>gi|443478414|ref|ZP_21068171.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
 gi|443016304|gb|ELS30996.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC 7429]
          Length = 1360

 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 2/168 (1%)

Query: 342  KLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKL 400
            KL+ E+A  K  E  L +   + E   ++K + LA MSHEIR+P+ GVV MA++L++T L
Sbjct: 924  KLQLELAEHKQTEIALAQAKELAEAANKSKSEFLANMSHEIRTPMNGVVGMAQLLASTPL 983

Query: 401  DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-S 459
              +Q+  + +++ SGD +L +INDILD+SK+ESG ++LE  +F   + +  V +     +
Sbjct: 984  RNDQKNFVQIILDSGDALLNIINDILDISKIESGNLQLEQKEFNFDDTIGSVCKLLGKQA 1043

Query: 460  LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
              K + L+  I+D     V+GD  R+RQI  NLI NAIKFT +G + I
Sbjct: 1044 FDKNINLQCQISDHALTTVLGDSSRLRQIFINLIGNAIKFTEQGYINI 1091



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 40/159 (25%)

Query: 858  PKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN------------Y 904
            P P KIL+VEDN +N  +A  M+++LG+ +D VNNG + +     Q+            Y
Sbjct: 1222 PVPLKILVVEDNILNQKIAVLMLEKLGYKVDAVNNGRDCLDMFLNQDTNQDTNQDTNPTY 1281

Query: 905  DLILMDVCMPVMDGLKATRLIRS--FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
            D+I MDV MPVM GL+AT+LIR      T  W                         I+A
Sbjct: 1282 DIIFMDVKMPVMGGLEATQLIRKRLSSSTQPW-------------------------IVA 1316

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            +TA+ L    E C   GM+ ++SKP+T + +K  + QY 
Sbjct: 1317 ITADVLPHDYEACINVGMNDYISKPITIKDIKRTISQYM 1355



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 41/64 (64%)

Query: 593  RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
            R  + DTGIGI  + +  LF  + Q  A   R+YGGTGLGLAICK++VELM G + V S+
Sbjct: 1106 RFSIVDTGIGIDSDRIDKLFTPFTQADASINRQYGGTGLGLAICKRIVELMNGTIWVESR 1165

Query: 653  VHCG 656
               G
Sbjct: 1166 GQVG 1169


>gi|388467999|ref|ZP_10142209.1| sensor histidine kinase/response regulator [Pseudomonas synxantha
           BG33R]
 gi|388011579|gb|EIK72766.1| sensor histidine kinase/response regulator [Pseudomonas synxantha
           BG33R]
          Length = 932

 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L +     +    AK + LATMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 431 DISARKQVEAALEEARQSADAANAAKTLFLATMSHEIRTPLYGVLGTLELLARTQLDAQQ 490

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
           +  L  +  S   +LQLI D+LD+SK+E+G + LE  +F P ++V  ++Q  AAA+  K 
Sbjct: 491 KDYLQAIEGSSSTLLQLICDVLDVSKIEAGQLALEMGEFSPLDLVHEIIQGYAAAAHAKG 550

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L L       +P  +IGDV RIRQIL NL++NA+KFT  G+V +++ V+
Sbjct: 551 LQLYACFDPKLPERLIGDVTRIRQILNNLLNNAVKFTDYGRVVLRVKVL 599



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 26/139 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN IN ++ +  +++LG ++++  +G +A+      N+D++L DV MP ++G + 
Sbjct: 812  LLVAEDNIINQLILRDQLEELGCTVELAADGQQALQLYTAGNFDVVLTDVNMPHINGYEL 871

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
             R +R    T                          +PII  TANA+   A+ C A GM+
Sbjct: 872  ARELRRQGCT--------------------------LPIIGATANAMRGEADLCLAAGMN 905

Query: 982  SFVSKPVTFQKLKECLEQY 1000
              + KP   + L   L  Y
Sbjct: 906  HCLVKPFALRALFNSLAPY 924



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 4/88 (4%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           D +  + +W    V DTG GI +     +F  + Q S  +     GTGLGL IC++L EL
Sbjct: 602 DGERSSLLW---QVSDTGKGIAQEDQAMIFEPFYQ-SEGNTNVVAGTGLGLPICQRLTEL 657

Query: 643 MGGRLTVTSKVHCGSTFTFILPYQVSPI 670
           M G + + S++  GS+F+ ILP + +P+
Sbjct: 658 MNGNIRMVSELGLGSSFSLILPLEEAPV 685


>gi|257092610|ref|YP_003166251.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045134|gb|ACV34322.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1295

 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 94/148 (63%), Gaps = 2/148 (1%)

Query: 364 TEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
            E   RAK   LA MSHEIR+PL GV+ M ++L  + L   QR  L ++  S D +L ++
Sbjct: 787 AEAANRAKSAFLANMSHEIRTPLNGVIGMTDLLLGSTLSHRQRAHLQIVKQSSDALLTIL 846

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGD 481
           NDILD SK+E+G +  E   F  R+VV  +L+  A  +  K + L GDIA DVP  V+GD
Sbjct: 847 NDILDFSKIEAGKLVAERVSFNLRQVVGEMLKALALRASDKGIELIGDIAADVPTHVLGD 906

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGIKL 509
             R+RQ+L NL+ NAIKFT +G+V ++L
Sbjct: 907 PGRLRQVLVNLVGNAIKFTSQGEVIVRL 934



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 43/68 (63%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            + D+GIGIPE  L T+F  + Q      R+YGGTGLGL I  +L EL+GG + V S +  
Sbjct: 950  IIDSGIGIPEEKLATIFDAFAQADGSITRRYGGTGLGLTISARLAELLGGHIRVDSTLGQ 1009

Query: 656  GSTFTFIL 663
            GSTF F L
Sbjct: 1010 GSTFHFTL 1017


>gi|75910827|ref|YP_325123.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704552|gb|ABA24228.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1672

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 156/307 (50%), Gaps = 41/307 (13%)

Query: 369  RAK-QMLATMSHEIRSPLTGVVSMAEILSNTK-LDREQRQLLGVMISSGDLVLQLINDIL 426
            RAK + LA MSHE+R+PL  ++   +I+S+ K L ++ +Q L ++  +G+ +L LIND+L
Sbjct: 1144 RAKSEFLANMSHELRTPLNAILGFTQIMSHDKTLSKDNQQNLTIINRAGEHLLDLINDVL 1203

Query: 427  DLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-----KILMLEGDIADDVPIEVIGD 481
            ++SK+E+G   L    F     + H+L      +Q     K L L+ + A ++   +  D
Sbjct: 1204 EMSKIEAGRTTLNINNFD----LIHLLDNLQEMMQGRAKAKGLHLQFEYAPNIAQHIQAD 1259

Query: 482  VLRIRQILTNLISNAIKFTPEGKVGIKLY-------VVPEPPFAKEGLKQKSKAYQSATD 534
              ++RQ+L N++ NAIKFT  G + +++        +V +     E L++    +   + 
Sbjct: 1260 ESKLRQVLLNILGNAIKFTETGSIILRVKMGDGDWGLVSQRGLLYETLREGGFPHVGVSL 1319

Query: 535  AVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRC 594
             V       K Q  + + G  D       +   H   P T     N          ++  
Sbjct: 1320 PV-------KVQLTNSEGGTED-------ETKTHLSTPNTQFPITNPR--------FLIF 1357

Query: 595  DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
            ++ DTGIGI ++ +  LF  + Q  A   +   GTGLGLAI ++ V+LMGG ++++S V 
Sbjct: 1358 EIQDTGIGICDDEVGVLFEAFGQTEAGR-KSQQGTGLGLAISRKYVQLMGGDISISSTVG 1416

Query: 655  CGSTFTF 661
             GSTF+F
Sbjct: 1417 VGSTFSF 1423



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 27/146 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+V+D   + ++   ++  +G  +    NG EA+   Q  +  LILMD+ MP+MDG +
Sbjct: 1455 RILVVDDVADSRLLLVKLLSSVGFVVQEAANGQEALAIWQQWHPQLILMDMRMPIMDGYE 1514

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-----IIAMTANALSESAEEC 975
            AT  IRS E                     + NH   IP     IIA+TA+A  E  +  
Sbjct: 1515 ATHFIRSAE---------------------TENH-TTIPNPHTIIIALTAHAFEEQRQAM 1552

Query: 976  FANGMDSFVSKPVTFQKLKECLEQYF 1001
               G D  ++KP + +++ E L +Y 
Sbjct: 1553 LQVGCDDLINKPFSEKEILEKLNKYL 1578


>gi|352090558|ref|ZP_08954591.1| histidine kinase [Rhodanobacter sp. 2APBS1]
 gi|351676071|gb|EHA59226.1| histidine kinase [Rhodanobacter sp. 2APBS1]
          Length = 1180

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 10/158 (6%)

Query: 363 ITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQL 421
           + E    AK Q LAT+SHEIR+P+TGV+ MAE+L +T L+R+Q      M  SG ++L+L
Sbjct: 812 LAEAASAAKTQFLATLSHEIRTPMTGVMGMAELLLSTPLNRQQHDYTQAMQRSGGMLLKL 871

Query: 422 INDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-----TAAASLQKILMLEGDIADDVPI 476
           +ND LDL+++E+G ++LE   F PR++++ V Q       A  ++ +L L    AD++P 
Sbjct: 872 LNDALDLARIEAGRLELEPVPFDPRQLLEDVAQLEQGLAHAKGIRFVLAL----ADELPA 927

Query: 477 EVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
           +++GD +RI+QIL NL +NA+KFT  G V +     PE
Sbjct: 928 QLLGDAVRIKQILLNLANNALKFTEHGSVTLSAQRQPE 965



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 24/153 (15%)

Query: 848  SAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDL 906
            +A  P  +P  +  ++LLVED+ I   V + ++++ GH++  V NG+ A+  +    +D 
Sbjct: 1042 AAPAPVERPSGRRYRLLLVEDDTIVAAVIRGLLEREGHAVVHVVNGLAALAELAHAQFDA 1101

Query: 907  ILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966
            +L+D+ +P +DG +  RLIR  E  G                       + +PI+A+TA 
Sbjct: 1102 VLLDLDLPGVDGFQIARLIRQRELAG-----------------------RHLPIVAVTAR 1138

Query: 967  ALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
              SE   +  A GMD F+ KP++ ++L   L +
Sbjct: 1139 QGSEDEAKARAAGMDGFLRKPLSGEQLAAALAR 1171



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 6/87 (6%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            ++  V DTG GIPE +   LF+++ Q  A+  ++  G+GLGLAIC++LVE+MGG + + S
Sbjct: 967  LQFSVSDTGPGIPEASQARLFQRFEQ--AESPQRRAGSGLGLAICRELVEMMGGSIELES 1024

Query: 652  KVHCGSTFTFILPY----QVSPIEENS 674
            ++  GSTF   LP       +P+E  S
Sbjct: 1025 RLGHGSTFRVRLPLVEPAAPAPVERPS 1051


>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
            AMB-1]
 gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
            AMB-1]
          Length = 992

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/151 (41%), Positives = 88/151 (58%), Gaps = 25/151 (16%)

Query: 852  PETKPKP--KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909
            PE  P+P  + +IL+ EDN +N  VA  ++++LGHS+DV  +G EAV AV+ + YDL+LM
Sbjct: 734  PEAIPRPARRLRILVAEDNPVNQQVAVGLLRKLGHSVDVAADGAEAVEAVRSRPYDLVLM 793

Query: 910  DVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALS 969
            DV MP MDGL+AT  IR+                        +   +R+PI+AMTANA+ 
Sbjct: 794  DVQMPEMDGLQATAAIRAL-----------------------TGGAERVPIVAMTANAMR 830

Query: 970  ESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                 C   GMD ++SKP+  +KL E L QY
Sbjct: 831  GDDRMCLDAGMDRYISKPIDRRKLMEVLAQY 861



 Score =  102 bits (255), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 7/167 (4%)

Query: 345 EEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
            E A+  A++ +      + E   +AK   LATMSHEIR+P+ GV+ M  +L +T+LD E
Sbjct: 337 RETAMATARQAQ-----QVAERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDTQLDPE 391

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-K 462
           QR     +  S + +L +INDILD SK+E+G + LE+  F    +V+ ++   A     K
Sbjct: 392 QRHFATTIRDSAESLLTVINDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAK 451

Query: 463 ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            + +   +  D+P  V GD  R+RQIL NL  NAIKFT  G + I++
Sbjct: 452 GIEIASMVDPDLPAWVRGDPGRLRQILMNLAGNAIKFTSHGGISIEV 498



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/76 (57%), Positives = 55/76 (72%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R DV DTGIGIP++A+  LF  +MQV A  AR+YGGTGLGLAI K+L E+MGG + V S
Sbjct: 510 LRFDVRDTGIGIPQDAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGVES 569

Query: 652 KVHCGSTFTFILPYQV 667
               GS F F LP+Q+
Sbjct: 570 TPGAGSLFWFSLPFQM 585


>gi|118580297|ref|YP_901547.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503007|gb|ABK99489.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 604

 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 149/296 (50%), Gaps = 22/296 (7%)

Query: 282 EVLEKGLPAKREITFETELF--GSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREK 339
           + LEK   +  ++  E  L   G     + +E V   SGE   +  +  D+T+  R  E 
Sbjct: 119 DFLEKVFTSPTKVACEVSLMKEGVPELFVQIEGVAVASGEECRIGLI--DITEHKRAEEV 176

Query: 340 --MAKLREEIAV---QKAKETELNKTI--------HITEETMRAK-QMLATMSHEIRSPL 385
             MAK   E A+   + AK   L K I           E   RAK Q LA MSHE+R+P+
Sbjct: 177 LWMAKEATEAAILAKETAKALRLEKEISESLRREKEAAESATRAKDQFLANMSHELRTPM 236

Query: 386 TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445
           TGV+ M ++    +L    R  LG   SS + +LQ++NDILD++K+E+G + +E   F P
Sbjct: 237 TGVLGMLQLALEEELAPTLRNYLGTAHSSANSLLQILNDILDMTKIEAGKIIIEEMPFSP 296

Query: 446 REVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK 504
           R  V   +      + +K L +   +A++VP +++GD +R+RQ+L NLI+NA+KFT EGK
Sbjct: 297 RRCVTGAVDIITPEVRRKGLDIAISVAEEVPDKLVGDQMRLRQVLINLIANAVKFTNEGK 356

Query: 505 VGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHG 560
           V ++   V       +G ++ + A       + E+K        S  +  H + +G
Sbjct: 357 VAVQ---VTAGGTNSDGKREYTFAVTDTGIGIPEDKKDLLFHVFSQVDASHTRTYG 409



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 52/79 (65%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIPE+    LF  + QV A H R YGGTGLGLAICK+LVELMGG +   SK   
Sbjct: 378 VTDTGIGIPEDKKDLLFHVFSQVDASHTRTYGGTGLGLAICKELVELMGGMIDFDSKEGV 437

Query: 656 GSTFTFILPYQVSPIEENS 674
           GSTF F +  + +  E N+
Sbjct: 438 GSTFYFTISLREAKSERNA 456



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 29/160 (18%)

Query: 843 SPSSSSAEVPETKPKPK----PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
           +P+++    PET   PK    P +LL ED+     + + M+ +  +S+D+  +G +AV  
Sbjct: 456 APTAAEPLSPETFTAPKGERIPHLLLAEDDPTIQQILEMMLTKSNYSLDIAKDGKQAVEM 515

Query: 899 VQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
            +   YDL+LMDV MP++ G   T  IR                E+     G +      
Sbjct: 516 WEQGEYDLVLMDVQMPLLSGFDVTLAIR----------------ERERERGGHT------ 553

Query: 959 PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
           PI+AMTA+   E+ ++C A GMD ++SKP+ F    ECL+
Sbjct: 554 PIVAMTAHTGKEAEKKCIAAGMDHYISKPIDFN---ECLK 590


>gi|264678722|ref|YP_003278629.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
 gi|262209235|gb|ACY33333.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
          Length = 1089

 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/190 (40%), Positives = 107/190 (56%), Gaps = 17/190 (8%)

Query: 321 IGVNYMGMDVT----DQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLAT 376
           +   Y G DV       +  R +M + +E+  VQ  +  E   T             LA+
Sbjct: 456 VPTRYKGQDVVLCAFADISARAEMERTQEQAKVQAQRAVEAKST------------FLAS 503

Query: 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
           MSHEIR+PL G++   EIL+ T L  EQR+ +  + +S  ++ QLI+DILD++K+ESG +
Sbjct: 504 MSHEIRTPLYGLLGTLEILAMTPLSEEQRRHIDHIQNSSGILQQLISDILDVTKIESGQL 563

Query: 437 KLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
            LEA  F P E+V+  + + A A  QK L++   +   VP  V GD  RIRQILTNL+ N
Sbjct: 564 ALEAVAFDPGELVQSAVASCAPAGEQKGLVIYSCVDTSVPACVYGDAARIRQILTNLLGN 623

Query: 496 AIKFTPEGKV 505
           AIKFT  G V
Sbjct: 624 AIKFTSAGHV 633



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 26/132 (19%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           IL+ EDN IN +  +  ++QLG  + V  +G +A+      N+DL+L D+ MP M+G + 
Sbjct: 852 ILVAEDNPINQITLRDQLEQLGCQVTVAPDGADALALWSINNFDLLLTDLNMPRMNGYEL 911

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
              +R            E G+                PII +TANA+ E    C A GM+
Sbjct: 912 ASTLR------------ERGVS--------------TPIIGVTANAMKEEETRCRAAGMN 945

Query: 982 SFVSKPVTFQKL 993
           S++ KP+  + L
Sbjct: 946 SWLVKPIDLRSL 957



 Score = 47.4 bits (111), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V +   V D+G GI       LF  + Q++   A   GG G+GLA+  +L +LMG  L V
Sbjct: 647 VRLSLQVVDSGPGIGPEERKRLFEPFYQINGG-AHTVGGMGIGLALSAKLAKLMGSELHV 705

Query: 650 TSKVHCGSTFT 660
           TS+   GS+F+
Sbjct: 706 TSEPGLGSSFS 716


>gi|344343091|ref|ZP_08773961.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
           984]
 gi|343805643|gb|EGV23539.1| multi-sensor hybrid histidine kinase [Marichromatium purpuratum
           984]
          Length = 787

 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/216 (37%), Positives = 127/216 (58%), Gaps = 14/216 (6%)

Query: 309 YVEPVFSKSGETIGVNYMGM-DVTDQVRKRE-KMAKLREEIAVQ-KAKETELNKTIHITE 365
           Y   V    G+ +G    G  D+ DQ+++R+ ++   RE++  Q  A+  EL +T+    
Sbjct: 208 YGVRVSESRGDELGSLVHGFNDMLDQIQQRDLRLESYREDLERQVHARTRELERTVAALA 267

Query: 366 ETM-------RAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDL 417
           E         RAK   LATMSHEIR+P+  V+ MAE+L  + L+  Q +    +  SG+ 
Sbjct: 268 EARDRAEAASRAKSDFLATMSHEIRTPMNAVLGMAELLRKSGLNARQIRFAETIQRSGEA 327

Query: 418 VLQLINDILDLSKVESGVMKLEAAKFRPREVVKH--VLQTAAASLQKILMLEGDIADDVP 475
           +L++INDILD SK+E+G + LE   F  R +++   +L   +AS+Q  L LE ++ADD+P
Sbjct: 328 LLEIINDILDFSKIEAGRLSLERYDFELRALIEGTVLLFAESASIQG-LRLETELADDLP 386

Query: 476 IEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
             V GD  R+RQIL NLI NA+KFT  G++ ++  +
Sbjct: 387 ARVNGDGARLRQILMNLIGNAVKFTAAGEIRVRAMI 422



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 73/142 (51%), Gaps = 20/142 (14%)

Query: 852 PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
           PE     + ++LLVEDN +N  +A  M++ LG  + + +NG EAV A     +DLILMD 
Sbjct: 528 PEPDSTLRGRVLLVEDNPVNQEMATLMLEDLGLEVAIADNGDEAVKAFAHDAFDLILMDC 587

Query: 912 CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
            MPVMDG  AT  IR  E             EQ   S         +PIIA+TAN     
Sbjct: 588 HMPVMDGFSATAAIRRCER------------EQGAVSP--------VPIIALTANVQKGI 627

Query: 972 AEECFANGMDSFVSKPVTFQKL 993
            + C   GM+ ++SKP + ++L
Sbjct: 628 EQRCDEAGMNGYLSKPFSQRQL 649



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 36/66 (54%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG GI       +F  + Q      R YGGTGLGLAIC+QL  +M G + V S    
Sbjct: 436 VSDTGPGIDPIQQDEIFEAFAQGDGSITRNYGGTGLGLAICRQLARMMEGDIRVDSVPGR 495

Query: 656 GSTFTF 661
           G+TFT 
Sbjct: 496 GATFTL 501


>gi|428311673|ref|YP_007122650.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
 gi|428253285|gb|AFZ19244.1| PAS domain S-box [Microcoleus sp. PCC 7113]
          Length = 1153

 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 164/307 (53%), Gaps = 36/307 (11%)

Query: 211 EELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPS----LHEEDILGKTDVE 266
           +++ Q L+R    L  ++ NAPV +   D ++R   +++H  S    L  + ++G+T  E
Sbjct: 153 QQVEQALERERQQLREIIANAPVAIAMFDTQMRC-LVHSHKWSMDYGLEGQSMMGRTLCE 211

Query: 267 IFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIY-VEPVFSKSGETIGVNY 325
           +FS    +     +R  L   + ++ E  +E E  GS  +L + V+P  +  G   GV  
Sbjct: 212 VFSDFPHRWQAVVQR-ALNGEVLSQPEDKWERE-DGSTLYLRWAVQPWSTPEGSVGGV-- 267

Query: 326 MGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPL 385
             +  TD++ +            + +A+E  L       E +    Q LA MSHEIR+P+
Sbjct: 268 --VIATDRINE------------LVEAREAAL-------ENSRLKSQFLANMSHEIRTPM 306

Query: 386 TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF-- 443
            GV+ M E+L+ T L+ EQ   +  +  S + +L L+NDILD SK+E+  M+LE  +F  
Sbjct: 307 NGVLGMTELLAKTDLNPEQVDFVQTLRVSAENLLTLLNDILDFSKLEASEMRLEIQEFDL 366

Query: 444 -RPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
            R  E V  +L TAA S  K L L   I ++VP +++GD  R+RQIL NL+ NAIKFT  
Sbjct: 367 NRCIEDVADLLATAAQS--KGLELAVLIDNNVPRQLLGDAHRLRQILMNLVGNAIKFTFA 424

Query: 503 GKVGIKL 509
           G+V I++
Sbjct: 425 GEVVIQV 431



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 23/99 (23%)

Query: 904  YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
            YD+ILMD  MP+MDG +AT+ +R+FE                    G+S   +R  +IAM
Sbjct: 915  YDIILMDCQMPIMDGYEATQHLRAFE--------------------GAS---RRTVVIAM 951

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            TANAL    E+C A  MD ++SKPV  ++L++ LE++ P
Sbjct: 952  TANALVGDREKCLAADMDDYISKPVRLEELEQVLERWLP 990



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 41/61 (67%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTGIGI       LF+ + QV     R++GG+GLGLAICKQLVELMGG + V S
Sbjct: 443 LRFSVTDTGIGIAPADQKKLFQSFSQVDTSSTRQHGGSGLGLAICKQLVELMGGEIGVAS 502

Query: 652 K 652
           +
Sbjct: 503 R 503


>gi|345872034|ref|ZP_08823974.1| integral membrane sensor hybrid histidine kinase [Thiorhodococcus
           drewsii AZ1]
 gi|343919568|gb|EGV30314.1| integral membrane sensor hybrid histidine kinase [Thiorhodococcus
           drewsii AZ1]
          Length = 703

 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/138 (46%), Positives = 96/138 (69%), Gaps = 1/138 (0%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA M+HE+R+PLTG+V M E+L  T+LD EQR+ L  + ++ + +  L+ DILDLSK+E
Sbjct: 198 FLAVMTHELRTPLTGLVGMVELLKTTRLDAEQREHLRDIDTAANALAMLVGDILDLSKIE 257

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G + LE   F PR++V+ V    ++ +L+  L L   +  +VP  V+GD LR+RQIL N
Sbjct: 258 AGKLVLERIPFDPRDLVRQVCGVVSSKALEAGLELVCRVESEVPRSVMGDPLRVRQILFN 317

Query: 492 LISNAIKFTPEGKVGIKL 509
           L+ NAIKFTP+G+V ++L
Sbjct: 318 LVGNAIKFTPQGQVLLRL 335



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 166/406 (40%), Gaps = 65/406 (16%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           ++ D+GIGI  + L TLF ++ QV     R++GGTGLG  I + L  LMGG + V S+  
Sbjct: 352 EIVDSGIGISADKLDTLFERFTQVDDSTTRRFGGTGLGTTIARDLSGLMGGSIEVASEEG 411

Query: 655 CGSTFTFILPY-QVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNG 713
            GS F+  LP  +V  +    D    L+ +       +D+     Q    + G + SS  
Sbjct: 412 RGSRFSVRLPLVEVDDLPLAPDVDWGLAGLRVLVIERNDLQRACVQDALESAGCVLSS-- 469

Query: 714 TSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPES 773
            + S+K+         A    G        P                  ++A  LSE   
Sbjct: 470 AAESQKI---------ARGAGGCDLLVIGDPPTG--------------CDLASELSEVRR 506

Query: 774 SFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEM 833
           + +  P     T   R      +T S+   P         A+  M          ++ E 
Sbjct: 507 ALAAEPPCLLLTYAGRRPIPRADTLSYLNKPFLAEDLLRRASALM---------GRLPES 557

Query: 834 QEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV 893
               DR  QS       + ET+     ++L+ EDN +   V  + + ++G      ++G 
Sbjct: 558 VMARDRDMQS------ALVETESAGGIRVLVAEDNPLAAKVLTAFLSRMGFPYARFSDGE 611

Query: 894 EAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
            A+       YD+ ++D+ MP + G+   R  R+               E+A       +
Sbjct: 612 TALKEALKGVYDIAIVDLNMPKLGGIDFVRRYRA---------------ERA-------D 649

Query: 954 HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
           H   +PI+A+TA+A  E  ++C A GM  F+ KPV+ + L++ +E+
Sbjct: 650 H--PLPIVALTASASEEVRQDCLAAGMAGFLVKPVSPEALRQTIER 693


>gi|345877533|ref|ZP_08829277.1| glycine cleavage system transcriptional repressor [endosymbiont of
           Riftia pachyptila (vent Ph05)]
 gi|344225426|gb|EGV51785.1| glycine cleavage system transcriptional repressor [endosymbiont of
           Riftia pachyptila (vent Ph05)]
          Length = 952

 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%)

Query: 339 KMAKLREEIAVQKAKETELNKTIHITEET-----MRAKQMLATMSHEIRSPLTGVVSMAE 393
           ++++L   ++++  +  ++ + + + +E      M   + LATMSHEIR+PL G++ + E
Sbjct: 222 QLSELTNRLSMENDQRRDVERELSLAKEAAETANMAKTEFLATMSHEIRTPLNGILPILE 281

Query: 394 ILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV- 452
           +L  TKL  EQRQ +   ++S  L+L +INDILD SKVE+G ++LE  +   RE+V+ V 
Sbjct: 282 MLRETKLSAEQRQFVMTALNSTQLLLSIINDILDFSKVEAGKLELEFIELNVRELVEQVT 341

Query: 453 -LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            L T AA  ++ L L+  +A +VP    GD +R+RQILTNL+SNA+KFT +G + +++
Sbjct: 342 SLMTNAAD-RRGLKLKHKVAPEVPRSARGDPIRLRQILTNLVSNAVKFTEKGGISVEI 398



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 21/141 (14%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+VEDN +N+ V K M+++ G +     +G EA+  V  +N+D++LMD  MP MDG ++
Sbjct: 678  VLVVEDNPVNMAVVKKMLQRAGLTPVTAMDGAEALKMVGEENFDVVLMDCQMPRMDGYES 737

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T  IR+ E+                      N   R+PIIAMTANA++   E C A GMD
Sbjct: 738  TEAIRNREEM---------------------NGLSRLPIIAMTANAMAGDRERCLAAGMD 776

Query: 982  SFVSKPVTFQKLKECLEQYFP 1002
             +++KPV    L+  L Q+ P
Sbjct: 777  DYLAKPVKPSALENMLRQWLP 797


>gi|254443535|ref|ZP_05057011.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198257843|gb|EDY82151.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1302

 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 6/174 (3%)

Query: 340  MAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNT 398
            M  +  +I ++K    EL +     E   +AK   LATMSHE+R+P+ GV+SMA IL +T
Sbjct: 892  MFCIMRDITLRKKVHQELTRARDAAESNTKAKSAFLATMSHELRTPMNGVISMANILLDT 951

Query: 399  KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH---VLQT 455
             LD  QR     +  SG+ +L L+NDILDLSK E+G + +E  +   +E++     +L T
Sbjct: 952  DLDETQRDYTSTIRDSGESLLTLLNDILDLSKAEAGKLSIEPFELDLKELLNQSVSLLST 1011

Query: 456  AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             A   QK + LE ++ DD P  +IGD  RI+Q++ NL  NAIKFT +G V I +
Sbjct: 1012 TAQ--QKNIQLETNVTDDTPTLLIGDAGRIKQVILNLTGNAIKFTEDGHVKINV 1063



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/143 (38%), Positives = 75/143 (52%), Gaps = 24/143 (16%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            P  KIL+ ED  IN  V +  +K++G + D+  NGVE + AV+ + YD+ILMD  MPVMD
Sbjct: 1178 PPLKILIAEDLPINQRVTRLQLKKIGLTADLAENGVEVLDAVRSKRYDVILMDCQMPVMD 1237

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +AT+ +R                  A+P          I I+A+TANA+    E CFA
Sbjct: 1238 GYQATKKLR------------------AVPEHSD------IHIVALTANAMEGDKERCFA 1273

Query: 978  NGMDSFVSKPVTFQKLKECLEQY 1000
             GM+ FVSKP     L    E +
Sbjct: 1274 AGMNDFVSKPTRPDTLLTAFENF 1296



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query: 584  EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
            ED    V IR ++ DTG+GI E A   LFR + Q    H+R++GGTGLGLAI K++VELM
Sbjct: 1067 EDTNKHVNIRIEIEDTGVGISETAASRLFRPFEQADGSHSRRFGGTGLGLAISKEIVELM 1126

Query: 644  GGRLTVTSKVHCGSTFTFIL 663
             G + V S +  GSTF F L
Sbjct: 1127 DGEIGVDSVLGKGSTFWFTL 1146


>gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37]
 gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 968

 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 120/193 (62%), Gaps = 12/193 (6%)

Query: 319 ETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAK-ETELNKTIHITEETMRAKQ----M 373
           +TI +  + M  +D+V       +L E     +A     + + +H  E  ++A Q     
Sbjct: 389 DTIKIKRLAMKYSDEV------GRLAESFVFMEASIRKNIQQALHEKEIAVKASQAKSEF 442

Query: 374 LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433
           LATMSHEIR+P+ GV+ M E++  T+L  EQR+ + ++ SSG  +L +INDILD SK+E+
Sbjct: 443 LATMSHEIRTPMNGVLGMTELVLETELSSEQRRFMEMIKSSGFGLLDIINDILDFSKIEA 502

Query: 434 GVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNL 492
           G ++L+    + +E++KH++ + +  + +K L L  ++  ++   V+GD +R+RQ+LTNL
Sbjct: 503 GKLQLDNHPMQLQELIKHLVTSLSPLAKKKGLQLNYNLPQEMDTWVLGDRIRLRQVLTNL 562

Query: 493 ISNAIKFTPEGKV 505
           ISNAIKFT  G+V
Sbjct: 563 ISNAIKFTQRGEV 575



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 79/141 (56%), Gaps = 21/141 (14%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KILLVED+ +N   A  ++  LG  + +  NGVEA+  ++ QNYDL+LMD  MPVMDG +
Sbjct: 691  KILLVEDHPVNQEFAMQILSGLGVDLHLAGNGVEALKQLKEQNYDLVLMDCQMPVMDGYR 750

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT LIR  E             E   P         R+PIIA+TANA+ E  + C + GM
Sbjct: 751  ATELIRQKEQ------------ENGSP---------RLPIIALTANAMIEDRQRCISAGM 789

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D ++SKP    ++   L+++ 
Sbjct: 790  DDYLSKPFNKAQIVVLLQRWL 810



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 4/82 (4%)

Query: 592 IRCDVYDTGIGI-PENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
           ++  V D+GIGI PEN    +F  + Q  +   R YGGTGLGLAI KQL+E+MGG +  +
Sbjct: 591 LQIRVRDSGIGIAPENQ-DKIFESFSQADSSTTRNYGGTGLGLAISKQLIEMMGGSIGFS 649

Query: 651 SKVHCGSTFTFILPYQVSPIEE 672
           S++  G+TF F L  ++ P E+
Sbjct: 650 SELGQGTTFWFDL--KLKPTEQ 669


>gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 951

 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 160/364 (43%), Gaps = 82/364 (22%)

Query: 345 EEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
           ++I  Q+  E EL K     E    AK Q LA MSHEIR+P+ G+    E+L ++ L  E
Sbjct: 301 QDITEQRIAEAELYKAKVEAESANIAKSQFLANMSHEIRTPMNGIFGFLELLESSNLSLE 360

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKI 463
           QR+ +    S+ D++L +INDILD SK+E+                K VL+  + +L+ +
Sbjct: 361 QREFVREAKSASDILLNIINDILDFSKIEAK---------------KLVLENISFNLRTV 405

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKLYVVPEPPFAKEGL 522
                 I D V +                      F P+  + GI+LY + +P    E +
Sbjct: 406 ------IEDAVSL----------------------FVPKTLEKGIQLYTIIDPTIPDEVI 437

Query: 523 KQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSM 582
              S+  Q   + +               NG      GE              V +    
Sbjct: 438 GDPSRLKQILNNLL--------------SNGVKFTDAGE----------IAIKVDYFEEE 473

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           +E    T  +R    DTGIGI    +  LF+ + Q  A   RKYGGTGLGL+IC++LV +
Sbjct: 474 NEIALLTFEVR----DTGIGISGKDIQKLFKSFNQADASTTRKYGGTGLGLSICRELVNM 529

Query: 643 MGGRLTVTSKVHCGSTFTFILPYQVS-------PIEENSDDPDDLSDMADQDSVTDDVTA 695
           M G +TV S +  GSTF F +  ++S        I E  +D + L  + D D  +  +T+
Sbjct: 530 MDGEITVDSVLDKGSTFRFCVRLKISKRASEHISIFEKVNDVNIL--IVDNDENSRKITS 587

Query: 696 GFFQ 699
            + +
Sbjct: 588 SYLK 591



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 23/139 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +ILL EDN++N  +  SM+K  G + DV  +G EA+  V  ++YD++ MD  MPVMDG +
Sbjct: 720 RILLAEDNEVNRKIFISMLKSRGITCDVALDGKEALRKVSEEDYDIVFMDCQMPVMDGYE 779

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           AT  IR  E+                         K   I+A+TANA+   +E+C  +GM
Sbjct: 780 ATAEIRRIEENR-----------------------KHTKIVAVTANAMEGDSEKCIKSGM 816

Query: 981 DSFVSKPVTFQKLKECLEQ 999
           D++++KP+ F  + + +E+
Sbjct: 817 DNYITKPINFGIVFKMIEE 835


>gi|386827544|ref|ZP_10114651.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
 gi|386428428|gb|EIJ42256.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
          Length = 1871

 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 126/219 (57%), Gaps = 20/219 (9%)

Query: 293  EITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKA 352
            E+  E +L G + F +   P F   G   G+  +  D+T  +++ EK        A+++A
Sbjct: 1151 EVCGEIQLRG-RVFEVRYSPQFDSVGRQQGILGVATDITS-LKQVEK--------ALREA 1200

Query: 353  KETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVM 411
            KE          E   R+K   LATMSHEIR+P+ GV+ M ++L NTKL  +QR  + ++
Sbjct: 1201 KEN--------AESANRSKSDFLATMSHEIRTPMNGVIGMTQLLLNTKLTSQQRHYIEII 1252

Query: 412  ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDI 470
             SSGD +L +INDILD SK+E+G + L+      R++V  +++  AA  Q K + L  ++
Sbjct: 1253 RSSGDSLLTVINDILDFSKIEAGKLVLDVIDGDIRQLVDDMMKLFAAPAQHKGIELLYEL 1312

Query: 471  ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
              + P  +  D LR+RQIL NL+ NAIKFT EG V +K+
Sbjct: 1313 PAEFPNYLRCDPLRLRQILNNLVGNAIKFTEEGYVLLKI 1351



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 89/151 (58%), Gaps = 23/151 (15%)

Query: 853  ETKPKPK--PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMD 910
            +T+P P+   ++LL EDN IN  VAK M++QLG  + + +NG EA+  ++ +++DLILMD
Sbjct: 1592 QTQPLPQHTCRLLLAEDNIINQEVAKDMLQQLGCYVTIAHNGREALQRLEQESFDLILMD 1651

Query: 911  VCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970
              MP MDG +A+  IR  E               ++P          +PIIA+TANA+  
Sbjct: 1652 CYMPYMDGFEASLRIRERERC------------LSLPP---------VPIIALTANAMQG 1690

Query: 971  SAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
              E C + GM+ ++SKPV F++L++ L+ + 
Sbjct: 1691 DRERCLSAGMNDYLSKPVIFEQLQDMLKVWL 1721



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            V ++ DV DTGIGI       LF+ + Q  +  +R+YGGTGLGL I ++LVE+M G + +
Sbjct: 1361 VQLQVDVIDTGIGISPLVRDNLFKPFTQADSSTSRRYGGTGLGLVITRRLVEMMQGMMGI 1420

Query: 650  T-SKVHCGSTFTFILP 664
              ++   GS F   LP
Sbjct: 1421 CDTQTTRGSHFWVNLP 1436


>gi|386717200|ref|YP_006183526.1| Signal transduction histidine kinase [Stenotrophomonas maltophilia
           D457]
 gi|384076762|emb|CCH11347.1| Signal transduction histidine kinase [Stenotrophomonas maltophilia
           D457]
          Length = 923

 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+  +  +  L+      +   +AK   LATMSHEIR+PL GV+   E+L +T LD  Q
Sbjct: 424 DISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPLYGVLGTLELLGHTSLDARQ 483

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
            Q L  + SS  ++LQLI+D+LD+SK+ESG + LE A F PRE+ + VL++ AAS   K 
Sbjct: 484 SQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPAPFSPRELTESVLRSFAASATCKG 543

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L +       +P  V+ D  RIRQ+L NL+SNAIKFT  G+V +++  V
Sbjct: 544 LQILVCTDPRLPTRVLSDADRIRQVLGNLLSNAIKFTEHGRVVLRVRQV 592



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 31/154 (20%)

Query: 849 AEVPETKPKPKP-----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
           A +PET     P      +L VEDN IN ++    ++ LG  +++  +GVEA+   + Q+
Sbjct: 787 AALPETSRAATPMPLGLHVLAVEDNPINRVILAEQLRTLGCDVELAQDGVEALQRCREQS 846

Query: 904 YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
           +DL++ D+ MP MDG     L R   + GN                        +P+I  
Sbjct: 847 FDLVVTDINMPRMDG---HALARQLREDGN-----------------------PVPVIGA 880

Query: 964 TANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
           TANA +E  E C A+GM  ++SKP+   +L++ L
Sbjct: 881 TANATAEERERCLASGMQGYLSKPIDIARLRKAL 914



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG+GI       LF  + QV    A    GTGLGL+I  +LV LM G L V S+   
Sbjct: 605 VTDTGVGIAAEEQARLFEPFRQVRG--AASAQGTGLGLSISDRLVRLMSGELQVVSEPGL 662

Query: 656 GSTFTFILPYQVSPIEENS 674
           GS+F+  LP  V    E+ 
Sbjct: 663 GSSFSVRLPLPVLAAAEDG 681


>gi|345865150|ref|ZP_08817341.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
           Tica)]
 gi|345123737|gb|EGW53626.1| sensor protein GacS [endosymbiont of Tevnia jerichonana (vent
           Tica)]
          Length = 938

 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 116/178 (65%), Gaps = 8/178 (4%)

Query: 339 KMAKLREEIAVQKAKETELNKTIHITEET-----MRAKQMLATMSHEIRSPLTGVVSMAE 393
           ++++L   ++++  +  ++ + + + +E      M   + LATMSHEIR+PL G++ + E
Sbjct: 208 QLSELTNRLSMENDQRRDVERELSLAKEAAETANMAKTEFLATMSHEIRTPLNGILPILE 267

Query: 394 ILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV- 452
           +L  TKL  EQRQ +   ++S  L+L +INDILD SKVE+G ++LE  +   RE+V+ V 
Sbjct: 268 MLRETKLSAEQRQFVMTALNSTQLLLSIINDILDFSKVEAGKLELEFIELNVRELVEQVT 327

Query: 453 -LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            L T AA  ++ L L+  +A +VP    GD +R+RQILTNL+SNA+KFT +G + +++
Sbjct: 328 SLMTNAAD-RRGLKLKHKVAPEVPRSARGDPIRLRQILTNLVSNAVKFTEKGGISVEI 384



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 21/141 (14%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+VEDN +N+ V K M+++ G +     +G EA+  V  +N+D++LMD  MP MDG ++
Sbjct: 664  VLVVEDNPVNMAVVKKMLQRAGLTPVTAMDGAEALKMVGEENFDVVLMDCQMPRMDGYES 723

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T  IR+ E+                      N   R+PIIAMTANA++   E C A GMD
Sbjct: 724  TEAIRNREEM---------------------NGLSRLPIIAMTANAMAGDRERCLAAGMD 762

Query: 982  SFVSKPVTFQKLKECLEQYFP 1002
             +++KPV    L+  L Q+ P
Sbjct: 763  DYLAKPVKPSALENMLRQWLP 783


>gi|423692465|ref|ZP_17666985.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           SS101]
 gi|387997659|gb|EIK58988.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           SS101]
          Length = 932

 Score =  123 bits (308), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L +     +    AK + LATMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 431 DISARKQVEAALEEARQSADAANAAKTLFLATMSHEIRTPLYGVLGTLELLARTQLDAQQ 490

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
           +  L  +  S   +LQLI D+LD+SK+E+G + LE  +F P ++V  ++Q  AAA+  K 
Sbjct: 491 KDYLQAIEGSSSTLLQLICDVLDVSKIEAGQLALEMGEFSPLDLVHEIIQGYAAAAHAKG 550

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L L       +P  +IGDV RIRQIL NL++NA+KFT  G+V +++ V+
Sbjct: 551 LQLYACFDPKLPERLIGDVTRIRQILNNLLNNAVKFTDYGRVVMRVKVL 599



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 26/139 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN IN ++ +  +++LG ++++  +G +A+      N+D++L DV MP ++G + 
Sbjct: 812  LLVAEDNIINQLILRDQLEELGCTVELAADGQQALQLHTAGNFDVVLTDVNMPHINGYEL 871

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
             R +R    T                          +PII  TANA+   A+ C A GM+
Sbjct: 872  ARELRRQGCT--------------------------LPIIGATANAMRGEADLCLAAGMN 905

Query: 982  SFVSKPVTFQKLKECLEQY 1000
              + KP   + L   L  Y
Sbjct: 906  HCLVKPFALRALFNSLAPY 924



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           D +  + +W    V DTG GI +     +F  + Q S  +     GTGLGL IC++L EL
Sbjct: 602 DGERSSLLW---QVSDTGKGIAQEDQAMIFEPFYQ-SEGNTNVVAGTGLGLPICQRLTEL 657

Query: 643 MGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
           M G + + S++  GS+F+ IL     P+EE S  P
Sbjct: 658 MNGNIRMVSELGLGSSFSLIL-----PLEEASVPP 687


>gi|156054917|ref|XP_001593383.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980]
 gi|154704085|gb|EDO03824.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1464

 Score =  123 bits (308), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 120/197 (60%), Gaps = 13/197 (6%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
           GV  + MD+T +++ RE       ++ +Q+ + T L       +E  R K Q LA MSHE
Sbjct: 691 GVIGLSMDIT-EIKDREN------DLQMQERENTRLLANEAAAKEASRLKSQFLANMSHE 743

Query: 381 IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
           IR+P+ GV+ MAE+L++  LD EQ++    +  S + +L +INDILD SKVESG + +E 
Sbjct: 744 IRTPIAGVIGMAELLTDMNLDEEQQECAENIQRSANALLTVINDILDFSKVESGRLDIEE 803

Query: 441 AKFRPREVVKHVLQTAA-ASLQKILMLEGDI--ADDVPIEVIGDVLRIRQILTNLISNAI 497
            +F    VV+ V +    A+ +K LM + DI    D  + V+GD  R+RQI+TNL++N+I
Sbjct: 804 VQFSLSVVVRDVSKMLGFAAERKNLMFDSDITVGVDKDLIVMGDPGRVRQIITNLLTNSI 863

Query: 498 KFTPEGKVGIKLYVVPE 514
           KFT EG+V  K  V+ E
Sbjct: 864 KFTSEGRV--KFSVIKE 878



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 28/148 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY--------DLILMDVC 912
            KILLVEDN IN  +A   +++LG +   V NG EA+  +   +         D+ILMDV 
Sbjct: 1035 KILLVEDNAINQQIALKTIRKLGFTASAVWNGKEALDYLLAADSPNPPHPKPDIILMDVQ 1094

Query: 913  MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            MP++DG +AT ++R                    P S S+   + IPI+AMTA+ +    
Sbjct: 1095 MPIIDGYRATHILRHHS-----------------PYSYST---RNIPIVAMTASVIQGDR 1134

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQY 1000
            E+C   GMD +++KPV  + L++ L ++
Sbjct: 1135 EKCQKAGMDDYLAKPVKGKTLEKMLVRW 1162



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 51/77 (66%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           T+ ++  V DTGIGI E     LF+ + Q  +  AR++GGTGLGL I K LV+LM GR+T
Sbjct: 884 TIEVKFVVEDTGIGIEEEVRKRLFKPFSQADSSTARRFGGTGLGLTISKNLVDLMHGRIT 943

Query: 649 VTSKVHCGSTFTFILPY 665
           + S +  G+T TF +P+
Sbjct: 944 LESSLGQGTTATFWIPF 960


>gi|456823491|gb|EMF71928.1| GHKL domain protein [Leptospira interrogans serovar Canicola str.
           LT1962]
 gi|456968885|gb|EMG09996.1| GHKL domain protein [Leptospira interrogans serovar Grippotyphosa
           str. LT2186]
 gi|456988141|gb|EMG23289.1| GHKL domain protein [Leptospira interrogans serovar Copenhageni
           str. LT2050]
          Length = 499

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 150/327 (45%), Gaps = 73/327 (22%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L  TKL+
Sbjct: 86  LKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTKLN 145

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV          S++
Sbjct: 146 DEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF---------SIR 190

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEPPFAKE 520
            +L       D+           I  +L  L     I F  EGK+ I+ YV  +P     
Sbjct: 191 SVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP----- 227

Query: 521 GLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGN 580
            L+ +   +  A                   NG      GE        +   + VS   
Sbjct: 228 -LRLRQILWNLAG------------------NGIKFTSRGEVVLKVTQKNISKSSVS--- 265

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
                      I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I KQLV
Sbjct: 266 -----------IEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLV 314

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQV 667
           EL GG L + SK   GS FTF + Y +
Sbjct: 315 ELQGGVLKLESKDGEGSKFTFTIDYDI 341



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 372  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 431

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 432  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 467

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 468  MNDCLTKPLDLPILKSTLDLW 488


>gi|408675255|ref|YP_006875003.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
           17448]
 gi|387856879|gb|AFK04976.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
           17448]
          Length = 716

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 121/207 (58%), Gaps = 2/207 (0%)

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEET 367
           +Y  P+  K GE I V   G  + +   K      +  +I  +K  +  L +   I EE 
Sbjct: 136 VYEVPLRKKDGEIIWVIISGAPIIESSGKVTGSVGIHLDITERKKTQEALEEARQIAEEA 195

Query: 368 MRA-KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
            RA K+ LA MSHEIR+P+  ++ M  +L +T  +++Q + L  +  S DL+L L++D+L
Sbjct: 196 RRAEKRFLANMSHEIRTPINAIIGMTHLLYDTNPNKKQTEYLSAINYSADLLLNLVSDVL 255

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRI 485
           D+SK+E+G MKL    F  ++++   LQT    LQ K + L  D  +++  +VIGD   +
Sbjct: 256 DISKIEAGEMKLSEQIFSLKDLINSTLQTFRLRLQGKDVKLVFDFDEEIENDVIGDSTFL 315

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVV 512
            QIL NL+SNA+KFT +G++G+++ ++
Sbjct: 316 TQILMNLLSNAVKFTEKGEIGVQVSLL 342



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 22/138 (15%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           +L+VEDN +N    + ++ +   S  + +NG+ AV AV+ +++D+ILMD+ MP M+G +A
Sbjct: 450 VLVVEDNLLNQKYVEGLLLKWKMSYKITSNGLLAVEAVKKEDFDIILMDIRMPEMNGYEA 509

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
           T++IRS E   N                      + IPI+A+TA+A+S+     +  GM+
Sbjct: 510 TKVIRSMEGNAN----------------------QNIPIVALTASAMSDEIGFAYEIGMN 547

Query: 982 SFVSKPVTFQKLKECLEQ 999
           S+++KP T  +L++ L+Q
Sbjct: 548 SYLTKPFTPDQLRDVLKQ 565



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 45/73 (61%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V+DTGIGI    +  +F  + Q   D   KYGGTGLGLAI KQLV L GG + V S ++ 
Sbjct: 355 VFDTGIGISPQNIDKIFDSFKQADQDVKVKYGGTGLGLAIVKQLVNLHGGEINVESTLNE 414

Query: 656 GSTFTFILPYQVS 668
           G+ F F LP + S
Sbjct: 415 GTAFIFTLPLKDS 427


>gi|427730175|ref|YP_007076412.1| PAS domain-containing protein [Nostoc sp. PCC 7524]
 gi|427366094|gb|AFY48815.1| PAS domain S-box [Nostoc sp. PCC 7524]
          Length = 1712

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 109/178 (61%), Gaps = 5/178 (2%)

Query: 338  EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
            E+  + REE+ V   K   L +     E   RAK + LA MSHEIR+P+  V+ M E+L 
Sbjct: 985  EQETRQREELTV---KNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTELLL 1041

Query: 397  NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            NT+L  +QR  +  +++S + +L +INDILD SK+ESG ++LEA  F  R  V+ V+   
Sbjct: 1042 NTELTTQQRDFVETVLTSSEALLTIINDILDFSKIESGKLELEAQPFDLRTCVEQVIDLL 1101

Query: 457  A-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
            A  +  K + L   I   VP +++GD+ R+RQIL NL++NAIKFT +G+V + +   P
Sbjct: 1102 APKAAHKDIELAYLIHPQVPTQIVGDLTRLRQILMNLLNNAIKFTEKGEVILSVRAEP 1159



 Score = 97.8 bits (242), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 27/173 (15%)

Query: 831  CEMQEKPDRISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVV 889
            C ++ +P R ++ P     ++ +   +  P +ILL ED  +N  VA  M+K++G+  DVV
Sbjct: 1403 CTLENQPIR-AKLPYPYPPQINQHLAEQLPLRILLAEDIVVNQKVALLMLKKMGYRADVV 1461

Query: 890  NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSS 949
             NG+E +  +Q Q +D++LMDV MP MDGL+ +R IR       W+              
Sbjct: 1462 ANGLEVLAVLQHQPFDVVLMDVNMPEMDGLETSRRIRQ-----TWN-------------- 1502

Query: 950  GSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                   R  IIAMTANA+    E C A GMD ++SKP+  ++L + L +  P
Sbjct: 1503 ------DRPYIIAMTANAMQGDREACLAAGMDDYISKPLQLEELAKALGKCQP 1549



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            + DTGIGIP + +  LF+ ++Q  A   RKYGGTGLGL I K+L E+M G L V S+   
Sbjct: 1175 IKDTGIGIPPDKMGRLFQPFVQADASMTRKYGGTGLGLVISKRLGEMMSGYLWVESQGCV 1234

Query: 656  G 656
            G
Sbjct: 1235 G 1235


>gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 1222

 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/257 (34%), Positives = 141/257 (54%), Gaps = 23/257 (8%)

Query: 256 EEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFS 315
           +E+I+GK   E F+    K+  +  REVL+ G     E     +   S   +  +  +++
Sbjct: 620 QEEIIGKHISEFFTTP--KQQVNLIREVLKTGRVKNYETNVNIKGGESIQSISNIRLIYN 677

Query: 316 KSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-ML 374
             G+ IGV+ +  D+T                 ++KA + EL     I E++++ K+  L
Sbjct: 678 NEGKPIGVDGVARDIT----------------FLKKASQ-ELYHAKEIAEKSLKVKENFL 720

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           A MSHEIR+P+ GV+ M ++L+ T L  EQR+ +  +  S + +L ++NDILDLSK+E+G
Sbjct: 721 ANMSHEIRTPMNGVIGMIDLLNETPLMEEQRKYVQTIKKSSETLLNILNDILDLSKIEAG 780

Query: 435 VMKLEAAKFRPREVVK--HVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNL 492
            M+L  A     + V+  H L    A+L+ I +L   I  +VP  V+ D  R+ QIL+NL
Sbjct: 781 KMQLRLAPISIEQTVEKLHALFYQQATLKNIDLLYS-IDSNVPKVVLADETRLLQILSNL 839

Query: 493 ISNAIKFTPEGKVGIKL 509
            SNAIKFT +G V I++
Sbjct: 840 TSNAIKFTDQGSVRIQI 856



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 35/185 (18%)

Query: 811  HSEANREMIQ--TSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDN 868
             +EAN+  +   T + NE +++ E +       ++P++ S+E      K  PKILLV+DN
Sbjct: 926  QTEANKGSVFWFTFEANESKRLVEAK------VETPNAFSSE---KTFKDYPKILLVDDN 976

Query: 869  KINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSF 928
             IN+ VA  ++++ G  ID   NG+EA+  V+   Y ++LMD+ MP MDG++AT  IR  
Sbjct: 977  AINLFVASEILRKAGCEIDTAGNGLEAIQKVKENPYRMVLMDIQMPQMDGIEATAEIRKL 1036

Query: 929  EDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
                                    N     PIIAMTA ++ E  +    NGMD +++KP+
Sbjct: 1037 ------------------------NLAYTPPIIAMTAYSMKEDKDRFMVNGMDDYIAKPI 1072

Query: 989  TFQKL 993
              + L
Sbjct: 1073 KAESL 1077



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 46/70 (65%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           IR ++ DTGIGI ++ L  LF  + QV    ++ YGGTGLGLAI K+L +LM G + V +
Sbjct: 868 IRVNISDTGIGIAQDKLNVLFGYFNQVDNSSSKSYGGTGLGLAISKELSKLMNGEIGVQT 927

Query: 652 KVHCGSTFTF 661
           + + GS F F
Sbjct: 928 EANKGSVFWF 937


>gi|395006344|ref|ZP_10390171.1| PAS domain S-box [Acidovorax sp. CF316]
 gi|394315692|gb|EJE52476.1| PAS domain S-box [Acidovorax sp. CF316]
          Length = 1730

 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 157/311 (50%), Gaps = 36/311 (11%)

Query: 211  EELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVEI 267
            +E  Q ++R+  F+  VL+N    +  +D +  Y ++   +     L    +LG + +++
Sbjct: 836  KEAEQEVQRSRQFMEAVLENINSAIYVKDVQGAYTYVNSDWERATGLARAQVLGHSAIDV 895

Query: 268  FSGAGVKESQDFKREVLEKGLPAKREITFETELFGS----KTFLIYVEPVFSKSGETI-G 322
                  +       + LE G     ++    E+ G     + F +   P+  + GE I G
Sbjct: 896  HPSGRGQSYHALDMQALEAG-----QLLVTEEVAGEDGEERHFQVTKVPM--RQGEEISG 948

Query: 323  VNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEI 381
            +  +  DVTD+ +  E          +++AKE        + E+  RAK + LA MSHEI
Sbjct: 949  LCSIAFDVTDRKKSEED---------IRRAKE--------MAEDATRAKSEFLANMSHEI 991

Query: 382  RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
            R+P+  ++ M+ +   T LD +QR  +  +  + + +L +INDILD SK+E+G M +E  
Sbjct: 992  RTPMNAIIGMSHLALQTALDNKQRNYIEKVNRAAESLLGIINDILDFSKIEAGKMSMEQV 1051

Query: 442  KFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFT 500
             FR  +V+ HV        + K L L    ADDVP  ++GD LR+ QIL NL SNA+KF 
Sbjct: 1052 DFRLEDVLDHVANLIGMKAEDKGLELLFSTADDVPTALVGDPLRLGQILANLGSNAVKFA 1111

Query: 501  PEGKV--GIKL 509
             +G++  GI+L
Sbjct: 1112 EQGEIVLGIEL 1122



 Score = 83.2 bits (204), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 28/165 (16%)

Query: 838  DRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
            DR++      +  + + K     ++LLVEDN +N  +A  +++Q G  + + NNG EA+ 
Sbjct: 1360 DRVASRAQGQTEHLQQLK---GARVLLVEDNALNQELAMELLRQAGIEVVLANNGQEALD 1416

Query: 898  AVQCQ-NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
             +     +D +LMD  MPVMDG  ATR +RS                  +P       F 
Sbjct: 1417 LLAADPRFDGVLMDCQMPVMDGYTATRHLRS------------------LP------QFA 1452

Query: 957  RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             +PIIAMTANA++   E+    GM   + KP+  +++  C+ ++ 
Sbjct: 1453 DLPIIAMTANAMAGDREKVIEAGMVDHIPKPLRVEEMFACMARWI 1497



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 585  DLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMG 644
            ++E   W++    D+GIG+       LF+ + Q  +   R+YGGTGLGLAI K LVE+M 
Sbjct: 1132 EVELHFWVK----DSGIGMTPEQCARLFQSFSQADSSTTRRYGGTGLGLAISKTLVEMMQ 1187

Query: 645  GRLTVTSKVHCGSTFTFILPY--QVSPIEENSDDPDDL 680
            GR+ V S V  GSTF F++ +  Q  P+     D ++L
Sbjct: 1188 GRIWVESTVGQGSTFHFLVHFGLQAQPMPRRMFDANEL 1225



 Score = 46.2 bits (108), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 31/143 (21%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-----YDLILMDVCMPVM 916
            +L+V+DN     +  +M ++ G  +D   +G E +  V+  +     YDL+LMD  MP M
Sbjct: 1230 VLVVDDNATAREILSTMARRFGLEVDTARDGEEGLRMVEGADSRSLAYDLVLMDWKMPRM 1289

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG +  R +++ +               A P+           +I +TA    E+     
Sbjct: 1290 DGAETVRRMQALKGG-------------AAPA-----------VIMVTAFGREEAMNAVH 1325

Query: 977  ANG--MDSFVSKPVTFQKLKECL 997
            + G  +++ ++KPVT   L E +
Sbjct: 1326 SRGARVNAVLTKPVTASTLLEAV 1348


>gi|196230968|ref|ZP_03129828.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224798|gb|EDY19308.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 977

 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 101/166 (60%), Gaps = 2/166 (1%)

Query: 345 EEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
           E+I  +K  E +L+K      E+ R K + LA MSHEIR+P+ GV+ M  +L +T L+ E
Sbjct: 318 EDITERKYVEAQLSKACDAALESARLKSRFLANMSHEIRTPMNGVIGMTNLLLDTSLNNE 377

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-K 462
           QR     + +S + +L +INDILD SK+E+G M  E   F   +VV+  L+  A     K
Sbjct: 378 QRDFAETIRASAEGLLTVINDILDFSKIEAGKMTFEDLDFNLHDVVESTLELLAKQAHTK 437

Query: 463 ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            + L G I  +VP  + GD  RIRQ+LTNL+SNAIKFT  G+V I+
Sbjct: 438 GIELAGFIEPNVPTRLRGDAGRIRQVLTNLVSNAIKFTQTGEVTIR 483



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 84/160 (52%), Gaps = 31/160 (19%)

Query: 840 ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
           IS SP+  S   PE       +IL+ EDN +N  VA   +++LG+  DV  NG EA+ A+
Sbjct: 720 ISMSPNPHSFR-PE-------RILVAEDNAVNQRVALGQLRKLGYRADVAGNGFEALQAL 771

Query: 900 QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
               YD++LMD  MP MDG +AT  IR            E G ++A              
Sbjct: 772 SQIAYDIVLMDCHMPEMDGYEATLAIRQ----------REKGTQRAW------------- 808

Query: 960 IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
           IIAMTANA+S   E+C A GMD +VSKPV    L + LE+
Sbjct: 809 IIAMTANAISGDREQCLAAGMDDYVSKPVRTADLADALER 848



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 43/72 (59%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTG+GI   A   LF  + Q  A   R++GGTGLGLAICKQLVE M G + + S
Sbjct: 496 LRLQVSDTGVGISPEAQKNLFEAFNQADASTTRRFGGTGLGLAICKQLVEKMHGCIGLES 555

Query: 652 KVHCGSTFTFIL 663
               GS F F L
Sbjct: 556 TPGKGSIFWFTL 567


>gi|94313888|ref|YP_587097.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93357740|gb|ABF11828.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus metallidurans CH34]
          Length = 951

 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 119/208 (57%), Gaps = 6/208 (2%)

Query: 314 FSKSGETI---GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRA 370
           F  SG  I      Y+ + VT          + R ++A++   E EL +   + E+   A
Sbjct: 310 FGLSGSEIRRRAAPYVALVVTALALLALGYWRQRRQVAIRLQAERELQRAHRLAEDANAA 369

Query: 371 KQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLS 429
           K + LA MSHE+R+PL G++   E+LS T LD  QRQ +G + +S   +L +I+D+LD +
Sbjct: 370 KSIFLAAMSHEMRTPLYGMLGTLELLSLTALDDRQRQDVGTIQTSSATLLSIIDDLLDYT 429

Query: 430 KVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQI 488
           K E G + LE+  F P E+V+ V ++ A  +L+K L L   +  D+P  +IGD +R+RQ 
Sbjct: 430 KFEGGQLTLESVAFDPVELVEAVARSHAPLALRKGLALTCYVQADLPW-LIGDPVRVRQA 488

Query: 489 LTNLISNAIKFTPEGKVGIKLYVVPEPP 516
           L N ++NA+KFT EG VGI+ +     P
Sbjct: 489 LDNFLTNALKFTSEGHVGIRAFRAASTP 516



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 30/175 (17%)

Query: 828  QKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSID 887
            + +C     P   + SP   S ++     K   ++L V+D+ +N  + +  ++QLG    
Sbjct: 698  RALCRAAGIPLTSTASPVQRSTQML----KLDLQVLAVDDHPVNRRLMQQQLEQLGCRTT 753

Query: 888  VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMP 947
            +V++G +A+ A +   +D +L DV MP MDG      +R+                    
Sbjct: 754  MVSSGEDALLACRQGQFDAVLTDVHMPGMDGYALAHALRA-------------------- 793

Query: 948  SSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                 + F  IPII +TA+  +  AE C A+GM+  ++KPV  Q L + L Q  P
Sbjct: 794  -----DGFT-IPIIGVTASVATGEAERCVASGMNGHLTKPVLLQALADSLRQVLP 842



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 51/81 (62%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E T+ +  +V DTGIG+       LF  ++Q  A  AR++GG+GLGL+IC++L   MG  
Sbjct: 519 ETTLCLVLEVLDTGIGMSPGTQAQLFEPFVQGDATTARRFGGSGLGLSICRRLARRMGAS 578

Query: 647 LTVTSKVHCGSTFTFILPYQV 667
           + V S++  GS F+F +P ++
Sbjct: 579 IVVESELGRGSRFSFSVPLEI 599


>gi|386827592|ref|ZP_10114699.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
 gi|386428476|gb|EIJ42304.1| signal transduction histidine kinase [Beggiatoa alba B18LD]
          Length = 762

 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 107/163 (65%), Gaps = 3/163 (1%)

Query: 349 VQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQL 407
           +QK ++ EL     + E   +AK Q LATMSHEIR+P+ GV+ M E+L +T L+  QR L
Sbjct: 232 IQK-RDKELEHAKELAESASQAKSQFLATMSHEIRTPMNGVLGMTELLLDTGLNERQRHL 290

Query: 408 LGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILML 466
              + +SG  ++ +IND+LD SK+E+G + L  ++F    +V+  L   A A +QK L L
Sbjct: 291 AETVQNSGQTLMTIINDVLDFSKIEAGHLALYNSEFDVHALVEDTLDLFAGAIVQKKLAL 350

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
              IA +VP  + GD++R+RQIL+NLI+NAIKFT  G+V IK+
Sbjct: 351 CSHIAANVPKMLSGDLVRLRQILSNLINNAIKFTEVGEVVIKV 393



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 101/202 (50%), Gaps = 32/202 (15%)

Query: 799  SWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKP 858
            S+ Q+PA  +  H    +  +        Q +C +   P   +++  + S E      + 
Sbjct: 588  SYLQHPAISAILHKPIRQARLY-------QCLCNVINNPFPQTEAEQTDSTE------RF 634

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
              KILL EDN +N    + +++ LG  +D+V +G + +  ++ Q YDLI MD  MP +DG
Sbjct: 635  NAKILLAEDNIVNQQYVRLVLEDLGCQVDLVEDGEQVLKQLRLQAYDLIFMDCQMPHLDG 694

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            L AT+LIR     G  +A                NH   IPIIA+TA+A+    E C   
Sbjct: 695  LAATKLIR---QQGYLNA--------------KKNH--AIPIIALTAHAMQGDREYCLQI 735

Query: 979  GMDSFVSKPVTFQKLKECLEQY 1000
            GMD ++SKPV+ Q+L+E L  +
Sbjct: 736  GMDDYLSKPVSKQQLREILAHW 757



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 51/72 (70%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V ++  +YDTGIGIPE   P LF+ + QV    +R+YGGTGLGLAI KQL +LMGG + V
Sbjct: 403 VQLKFAIYDTGIGIPEAKCPILFQPFTQVDGSMSRRYGGTGLGLAISKQLAQLMGGEIGV 462

Query: 650 TSKVHCGSTFTF 661
            SK++ GS F F
Sbjct: 463 ESKINQGSLFWF 474


>gi|451947129|ref|YP_007467724.1| histidine kinase [Desulfocapsa sulfexigens DSM 10523]
 gi|451906477|gb|AGF78071.1| histidine kinase [Desulfocapsa sulfexigens DSM 10523]
          Length = 640

 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 115/191 (60%), Gaps = 4/191 (2%)

Query: 322 GVNYMGMD-VTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSH 379
           G N  G D +T    ++E +A++R  + +      E  + I +++E   +K + LA+MSH
Sbjct: 98  GFNAGGNDYITKPFNRQELLARVRNHLHLYDTL-LENKRLIRLSDEASHSKTEFLASMSH 156

Query: 380 EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
           EIR+PL  ++ MAE+LS+T L  EQR  + +  S+G+ +L++INDILDLSK+E+G   LE
Sbjct: 157 EIRTPLNSIIGMAEVLSDTPLSDEQRNYVHIFRSAGESLLEIINDILDLSKIEAGQTDLE 216

Query: 440 AAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
           A  F    ++  VL   +  ++++   L   I +DVP  + GD  R+RQIL NL+ N +K
Sbjct: 217 AIDFHLPSLLDSVLSILSVRAVEQNTHLSVHIHEDVPDGICGDPTRLRQILINLVGNGLK 276

Query: 499 FTPEGKVGIKL 509
           FT  G V I +
Sbjct: 277 FTENGTVTINV 287



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP      +F  + Q  +   RKYGGTGLGL IC++L ++M G++ + S    
Sbjct: 299 IKDTGIGIPVEKQELIFNSFTQADSLTTRKYGGTGLGLTICQKLTKIMKGKIWLESVPGQ 358

Query: 656 GSTFTFILPYQ 666
           GSTF F   ++
Sbjct: 359 GSTFFFTCSFR 369



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 26/149 (17%)

Query: 840 ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
           + +SP  +S  +      P  +IL+V+DN+ N  +    ++     +    NG EAV+  
Sbjct: 379 VERSPLPASCNI-----LPPARILIVDDNEDNRNLLCLYLRNTPFILVTAENGEEAVNVF 433

Query: 900 QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
           +   +DL+ MD+ MP+MDG +ATR +R +E     D                       P
Sbjct: 434 KRSPFDLVFMDIEMPLMDGYEATRRLRLWEREQKLDPT---------------------P 472

Query: 960 IIAMTANALSESAEECFANGMDSFVSKPV 988
           I+A+TA+A     ++C   G   +++KPV
Sbjct: 473 IVALTAHAFVRFRKKCMDAGCSDYLTKPV 501



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 24/132 (18%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           +L+V+D+K+N+++   ++++ G+++   NN  +A+  +  Q+ D+IL+DV MP MDG   
Sbjct: 9   VLVVDDHKVNLILLSRILEEEGYTVITGNNSRDALQHLHNQSPDIILLDVMMPGMDGFSL 68

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            R ++                            F  IPII +T+ +  E   E F  G +
Sbjct: 69  CRKLK------------------------KDKKFSDIPIIFLTSRSQKEDIVEGFNAGGN 104

Query: 982 SFVSKPVTFQKL 993
            +++KP   Q+L
Sbjct: 105 DYITKPFNRQEL 116


>gi|310640534|ref|YP_003945292.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|386039674|ref|YP_005958628.1| phytochromeB [Paenibacillus polymyxa M1]
 gi|309245484|gb|ADO55051.1| Sensor protein [Paenibacillus polymyxa SC2]
 gi|343095712|emb|CCC83921.1| phytochromeB [Paenibacillus polymyxa M1]
          Length = 891

 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 104/163 (63%), Gaps = 2/163 (1%)

Query: 347 IAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQR 405
           + V +  E E+ +     E   RAK + L+ MSHE+R+P+ G++ MA +L++T+LD EQR
Sbjct: 618 VFVDRTNEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTELDEEQR 677

Query: 406 QLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKIL 464
             + ++ SS + ++Q++N+ILDLSK+E+G M L    F   +VV  V       +++K +
Sbjct: 678 SYIDIITSSSNALMQILNEILDLSKIEAGKMSLLHESFVLEDVVGSVADLFMTQAMEKGI 737

Query: 465 MLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
            LE  +  ++P  ++GD +RIRQIL NL+SNAIKFT  G V I
Sbjct: 738 QLEWHVDQEMPGMLVGDHVRIRQILVNLVSNAIKFTERGHVNI 780



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 46/72 (63%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTGIGIP +    LF+ + Q+     RKYGGTGLGL+ICK LV+LMGG + V S
Sbjct: 796 IEFSVTDTGIGIPADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGGSIGVDS 855

Query: 652 KVHCGSTFTFIL 663
               G+TF F L
Sbjct: 856 DEARGATFRFQL 867


>gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 842

 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/183 (39%), Positives = 112/183 (61%), Gaps = 12/183 (6%)

Query: 334 VRKREKMAKLREEIAVQKAKETELNKTI-------HITEETMRAK-QMLATMSHEIRSPL 385
           VR R+++ +L E        E EL K I          E+  +AK + LA MSHEIR+P+
Sbjct: 412 VRSRDEVGRLAESFIFM---EVELKKNIKEACREKEAAEQANQAKSEFLARMSHEIRTPM 468

Query: 386 TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445
            GV+ MA IL++T L  +QR+ L  ++SSG+ +L +INDILD SK+E+G + L+   F+ 
Sbjct: 469 NGVLGMASILADTPLSEKQRKYLDTIVSSGESLLNIINDILDFSKIEAGKLDLDNHPFKL 528

Query: 446 REVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK 504
            E++ ++    +  +  K + L   I+D +P  +IGD  R+RQILTNL+ NA+KFT +G 
Sbjct: 529 SELLSYLTDIFSPRAHSKNIELICAISDGIPETLIGDSGRLRQILTNLVGNALKFTQQGS 588

Query: 505 VGI 507
           + I
Sbjct: 589 IQI 591



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 20/147 (13%)

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
            P    ++LLVED+ IN   A  ++  +G + D+  NG EA+  +   +YD++LMD  MPV
Sbjct: 704  PPLSGRVLLVEDHPINQEYAVELLNMIGITADIAENGREALTRLAKNHYDIVLMDCQMPV 763

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            MDG +    IR+               EQ+ P S      +R+PI+A+TANAL    + C
Sbjct: 764  MDGYETAMAIRA--------------AEQSHPGS------RRLPIVALTANALPADQQRC 803

Query: 976  FANGMDSFVSKPVTFQKLKECLEQYFP 1002
              +GMD F++KP + Q+L   L ++ P
Sbjct: 804  MDSGMDDFLAKPFSIQQLYASLARWLP 830



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 42/70 (60%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           ++  V DTGIGIP      +F  + Q      R YGGTGLGL+I K LVELMGG L V S
Sbjct: 605 LKISVIDTGIGIPLGKQQKIFESFSQADGSTTRTYGGTGLGLSISKSLVELMGGELGVES 664

Query: 652 KVHCGSTFTF 661
           +   GS+F F
Sbjct: 665 RPGEGSSFWF 674


>gi|348029065|ref|YP_004871751.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
 gi|347946408|gb|AEP29758.1| PAS domain-containing protein [Glaciecola nitratireducens FR1064]
          Length = 1045

 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 173/336 (51%), Gaps = 52/336 (15%)

Query: 195 KLNESVTNLEKQ-SSPVEELSQILKRADN---FLHFVLQNAPVVMGHQDKELRYRFIYNH 250
           KL +S + LE+   S   EL +I K  ++    L  +L N P  +  +D + RY  I   
Sbjct: 151 KLRKSASILEETVDSRTHELLKIAKELESQKMTLQSILDNIPDPIFCKDSDGRYVQINKS 210

Query: 251 FPSL---HEEDILGKTDVEIFSGAGVKESQDFKRE---VLEKGLP----------AKREI 294
           F  L    +  I+ KTD E++      E++ F ++   +L  GL             +E+
Sbjct: 211 FAKLTGYSQAFIVDKTDYELYDK---DEAEFFTKDDEKLLSSGLAHIVERNTIDVTGKEL 267

Query: 295 TFETELFGSKTFLIYVEPVFSKSGE-TIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAK 353
            FET     KT + Y       +GE   G+  +  D+TD  RKR + A L    A Q+A 
Sbjct: 268 LFETR----KTLIHY-------AGEDKAGILGISRDITD--RKRYEGAMLNATKAAQEAS 314

Query: 354 ETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
             +               + LA MSHEIR+P+ GV+ M ++L +T+L  +Q   L V  +
Sbjct: 315 NAK--------------SEFLARMSHEIRTPMNGVLGMIDLLLDTRLTSDQTHKLKVAKN 360

Query: 414 SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIAD 472
           S   +L +INDILD S+VE+G M++E+  F   + +++V QT A  S  K + L  D++D
Sbjct: 361 SASSLLTIINDILDFSRVEAGRMEIESLDFNLPQQIENVAQTLAIRSDAKGIELIVDVSD 420

Query: 473 DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
                V+GD +R+RQ+LTNLISNAIKFT  G++ ++
Sbjct: 421 IQQKMVVGDAVRLRQVLTNLISNAIKFTEVGQIVVR 456



 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 68/105 (64%), Gaps = 4/105 (3%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           T  + C V DTGIGIP++ L  LF  +MQV     R YGG+GLGLAIC++L+ELMGGR+ 
Sbjct: 465 TTRLECSVEDTGIGIPDSKLEHLFESFMQVDTSTTRVYGGSGLGLAICERLIELMGGRIQ 524

Query: 649 VTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMAD-QDSVTDD 692
           V+S ++ G+ F+F +  + S +E   D P   S++ D Q  V DD
Sbjct: 525 VSSSINKGTIFSFDINLKTSLLE---DKPQARSNIVDWQILVVDD 566



 Score = 89.4 bits (220), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 26/161 (16%)

Query: 846  SSSAEVPETKPKPK-PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA-VQC-- 901
            +++ ++PE    P   K+L+VEDN +N +VA+ ++K+ G    V  +G  A+   +Q   
Sbjct: 692  NANNQLPEIVKWPSYHKVLIVEDNSVNQLVAEGLLKKFGLQYGVAIDGSIAIQTLIQSEL 751

Query: 902  -QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
             Q Y LILMD  MPV+DG KAT  IR            +AG             +K IPI
Sbjct: 752  DQPYTLILMDCQMPVLDGYKATAKIRQ----------GDAG-----------ERYKNIPI 790

Query: 961  IAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            IAMTANA+    E+C  +GM+ +V KP+    L++ L   F
Sbjct: 791  IAMTANAMKGDREKCLQSGMNDYVPKPIDVGVLQKALVSGF 831


>gi|119899974|ref|YP_935187.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
 gi|119672387|emb|CAL96301.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
          Length = 1208

 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 149/302 (49%), Gaps = 31/302 (10%)

Query: 222 NFLHFVLQNAPVVMGHQDKELRY-RF--IYNHFPSLHEEDILGKTDVEIFSGAGVKESQD 278
           +F   +L++ P  +  +D + RY RF   +     +  E   G+  +E+  G   +    
Sbjct: 422 HFTELLLESIPTAIYLKDADGRYLRFNRAFEEMYGIDREKWYGRRVLELVPGDEGRLMHK 481

Query: 279 FKREVLEKGLPAKREITFETELFGSKTF-----LIYVEPVFSKSGETIGVNYMGMDVTDQ 333
              E+L++G       ++E  +   +T      L +   +    G   G+    +D+TD 
Sbjct: 482 KDLELLQEG----GHQSYEARIVNRRTGQHRDGLFWKARLTRADGTVTGLVGAVIDITD- 536

Query: 334 VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMA 392
            RKR                E EL     + E   +AK   LA MSHEIR+P+ G++ M 
Sbjct: 537 -RKR---------------VEQELESARQLAEAASQAKSDFLANMSHEIRTPMNGIIGMT 580

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452
           E+  +T+LD  QR  L +++SS + +L ++NDILD SK+E+G + +E   F P   V   
Sbjct: 581 ELALDTRLDPTQRDYLNIVLSSAESLLVIVNDILDFSKIEAGKLAIEEIDFNPAVAVTEA 640

Query: 453 LQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
           L++ +   + K L    +++ D+P  V GD  RIRQ+LTNL  NA+KFT  G++ +++  
Sbjct: 641 LKSISTRAERKKLRFAYELSPDLPAVVAGDSGRIRQVLTNLCDNALKFTKAGEIAVRVRA 700

Query: 512 VP 513
            P
Sbjct: 701 EP 702



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 75/139 (53%), Gaps = 23/139 (16%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILLVED+ +N ++A+ ++++ GH++ +  NG  AV       +D++LMD+ MPVM G  A
Sbjct: 961  ILLVEDHPVNQLLARQLLEKWGHTVTLAENGQIAVERFPEARWDIVLMDMHMPVMGGEDA 1020

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TRLIR+ E  G                       +  PIIAMTA+A+ E  + C   GMD
Sbjct: 1021 TRLIRALEPPG-----------------------QHTPIIAMTASAMPEDRQHCLDAGMD 1057

Query: 982  SFVSKPVTFQKLKECLEQY 1000
              ++KP+  Q +   L +Y
Sbjct: 1058 DHLAKPINAQAVHRLLARY 1076



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 39/67 (58%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIGI       +F  + Q      R++GGTGLGL I  +LV LMGGR+ V S   
Sbjct: 715 EVSDTGIGIDPEQQAQIFEAFTQADTSTTRRFGGTGLGLTISARLVGLMGGRIWVDSTPG 774

Query: 655 CGSTFTF 661
            GSTF F
Sbjct: 775 VGSTFHF 781


>gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1313

 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 123/219 (56%), Gaps = 21/219 (9%)

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEET 367
           + ++PV + +G+      +  D+T         A++  E+A+++AK TE        +E 
Sbjct: 749 VELQPVRNDAGQLQNFIVIETDIT---------ARVDTELALRRAK-TE-------ADEA 791

Query: 368 MRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
            RAK   LA+MSHEIR+P+ GV+ M  +L  T L  EQR  +  + +SG+ +L +INDIL
Sbjct: 792 SRAKSDFLASMSHEIRTPMNGVIGMTSLLMETDLSPEQRDFVNTIRTSGEALLTIINDIL 851

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           D SK+ESG M LE   F     ++  L   A  +  K L L   IA DVP  +IGD+ R+
Sbjct: 852 DFSKIESGKMDLEHLPFELATCLEESLDLFALQASAKHLELAYHIAPDVPEWIIGDITRL 911

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQ 524
           RQI+ NL++NA+KFT  G + I+  V   PP     LK+
Sbjct: 912 RQIVVNLVNNAVKFTSAGSIAIE--VRRRPPTVPANLKR 948



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 23/140 (16%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILL EDN +N  VA   +++LG+  D V+NG EAV  +  ++Y L+LMD+ MP MDGL+A
Sbjct: 1185 ILLAEDNTVNQKVALRFLERLGYRADAVSNGQEAVTTLAARHYHLVLMDLQMPEMDGLEA 1244

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            +R IR                 + +P+S      ++  I+A+TANA+    E C   GMD
Sbjct: 1245 SRQIR-----------------KKVPAS------RQPKIVALTANAMQGDRERCLEAGMD 1281

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKPV   +++  + + F
Sbjct: 1282 DYISKPVKLHEIEAAIRRLF 1301



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 47/68 (69%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIP   L  LF+ + QV +   RKYGGTGLGLAIC++L  LMGG + V SKV  
Sbjct: 955  VRDTGIGIPAERLDRLFKAFSQVDSSTTRKYGGTGLGLAICQRLSILMGGGIRVESKVGE 1014

Query: 656  GSTFTFIL 663
            GS+F F +
Sbjct: 1015 GSSFIFTI 1022


>gi|254505648|ref|ZP_05117794.1| sensor protein GacS [Vibrio parahaemolyticus 16]
 gi|219551301|gb|EED28280.1| sensor protein GacS [Vibrio parahaemolyticus 16]
          Length = 870

 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 109/169 (64%), Gaps = 2/169 (1%)

Query: 342 KLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKL 400
           +L + IA QKA +T+L +     E   +AK + LA MSHEIR+PL G++ M EILS+++L
Sbjct: 351 ELNDTIARQKAYQTKLVEAKEHAEAANQAKSVFLANMSHEIRTPLNGIIGMTEILSDSQL 410

Query: 401 DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA-AAS 459
           +  Q+++L  + +S   +L LINDILDLSK+ESG + L       RE++   +    A +
Sbjct: 411 NGSQKEILNDIDASSHALLVLINDILDLSKIESGNLVLSPHTANLREIIFDTMNMVNAQA 470

Query: 460 LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
           L++ + LE + ADDVP+    D  R++QIL NL+SNAIKF+  G V ++
Sbjct: 471 LKQEVTLEVEFADDVPVYAEMDEFRVKQILMNLLSNAIKFSANGSVLVR 519



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 28/167 (16%)

Query: 840 ISQSPSSSSAEVPETKPKPKP------KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV 893
           +SQ  + S   +    P P P      ++L+VEDN +N  +A   + ++G    + +NG+
Sbjct: 720 LSQCQNDSRFRIARQVPPPMPDTGDVKRVLIVEDNLMNQKIASFFLSKVGIEFAIASNGL 779

Query: 894 EAVHAVQC-QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
           EA++ V+  Q Y  +LMD  MP+MDGL AT+ IR      NW+                 
Sbjct: 780 EALNLVKSGQEYCAVLMDCMMPIMDGLTATKEIR------NWE---------------RE 818

Query: 953 NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
           N    +PIIA+TA+ L E  + CF  GMD+++ KP   ++L +  E+
Sbjct: 819 NQKAPVPIIALTASVLPEEIQSCFDAGMDAYLPKPYKSKQLFDIFEK 865



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 48/73 (65%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +  +V DTG+GI  + L  +F+ + Q      R++GGTGLGLAIC+QLVELM G L V S
Sbjct: 528 LNIEVLDTGVGIAADKLSDIFKPFTQEDGTITRRFGGTGLGLAICRQLVELMRGELVVES 587

Query: 652 KVHCGSTFTFILP 664
            V  GS FT ILP
Sbjct: 588 NVGEGSRFTVILP 600


>gi|148548955|ref|YP_001269057.1| histidine kinase [Pseudomonas putida F1]
 gi|148513013|gb|ABQ79873.1| histidine kinase [Pseudomonas putida F1]
          Length = 935

 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 104/165 (63%), Gaps = 2/165 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L       +    AK Q LATMSHEIR+PL GV+   E+LS T LD +Q
Sbjct: 434 DISARKQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRTVLDAQQ 493

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
           R  L  +  S   +LQLI D+LD+SK+E+G + LE ++F   ++V+ V+Q  +AA+  K 
Sbjct: 494 RDYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAARSKG 553

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
           L L   +   +P  +IGDV RIRQIL NL+SNA+KFT  G+V ++
Sbjct: 554 LQLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFTDCGRVVLR 598



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 27/157 (17%)

Query: 844  PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
            P   +A  P T+P     +L+ EDN IN ++ +  +++LG S+ +V++G +A+   Q ++
Sbjct: 802  PRDPAAPAPLTEPL-GLHVLVAEDNVINQLILRDQLEELGCSVTLVSDGEQALQTWQREH 860

Query: 904  YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
            +DL+L DV MP  +G + TR +R    T                           PI+  
Sbjct: 861  FDLLLTDVNMPGTNGYELTRALRQLGCTR--------------------------PIVGA 894

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            TANAL    E C A GMD  + KP   Q L  CL  Y
Sbjct: 895  TANALRGEEELCLAAGMDRCLIKPFNLQVLFNCLAPY 931



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 571 DPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
           D G  V     ++ D E +  +   V DTG GI E   P +F  + Q    H++   GTG
Sbjct: 591 DCGRVVLRARLLNRDGERSC-LLWQVSDTGKGIAEQDQPFIFEPFYQTEG-HSQVIPGTG 648

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           LGL IC++L +LM G+L + S++  GS+F+  LP +V+
Sbjct: 649 LGLPICQRLTQLMNGQLRLVSELGLGSSFSLTLPLEVA 686


>gi|395444614|ref|YP_006384867.1| histidine kinase [Pseudomonas putida ND6]
 gi|388558611|gb|AFK67752.1| histidine kinase [Pseudomonas putida ND6]
          Length = 935

 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 104/165 (63%), Gaps = 2/165 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L       +    AK Q LATMSHEIR+PL GV+   E+LS T LD +Q
Sbjct: 434 DISARKQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRTVLDAQQ 493

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
           R  L  +  S   +LQLI D+LD+SK+E+G + LE ++F   ++V+ V+Q  +AA+  K 
Sbjct: 494 RDYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAARSKG 553

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
           L L   +   +P  +IGDV RIRQIL NL+SNA+KFT  G+V ++
Sbjct: 554 LQLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFTDCGRVVLR 598



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 27/157 (17%)

Query: 844  PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
            P   +A  P T+P     +L+ EDN IN ++ +  +++LG S+ +V++G +A+   Q ++
Sbjct: 802  PRDPAAPAPLTEPL-GLHVLVAEDNVINQLILRDQLEELGCSVTLVSDGEQALQTWQREH 860

Query: 904  YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
            +DL+L DV MP  +G + TR +R    T                           PI+  
Sbjct: 861  FDLLLTDVNMPGTNGYELTRALRQLGCTR--------------------------PIVGA 894

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            TANAL    E C A GMD  + KP   Q L  CL  Y
Sbjct: 895  TANALRGEEELCLAAGMDRCLIKPFNLQVLFNCLAPY 931



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 571 DPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
           D G  V     ++ D E +  +   V DTG GI E   P +F  + Q    H++   GTG
Sbjct: 591 DCGRVVLRARLLNRDGERSC-LLWQVSDTGKGIAEQDQPFIFEPFYQTEG-HSQVIPGTG 648

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           LGL IC++L +LM G+L + S++  GS+F+  LP +V+
Sbjct: 649 LGLPICQRLTQLMNGQLRLVSELGLGSSFSLTLPLEVA 686


>gi|254475748|ref|ZP_05089134.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
 gi|214029991|gb|EEB70826.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
          Length = 742

 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 2/174 (1%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           E +  +  ++   K  E +LN      EE  R K + LATMSHEIR+P+ GV+ MA++L 
Sbjct: 335 ETVIAVERDMTAAKQYEQQLNDARIAAEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLE 394

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            T+LD EQR     ++ S   +L LIND+LDLSK+++G + L    F PR   +  L+  
Sbjct: 395 RTELDEEQRLYADTILGSARTLLSLINDVLDLSKMDAGEVTLSEVDFDPRACFQQTLKLF 454

Query: 457 AASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
               Q K + L  D+A+DVP  + GD  R+RQ++ NL+ NA+KFT +G V + +
Sbjct: 455 EPQAQEKGIQLHLDVAEDVPQLLNGDDRRLRQVILNLVGNAVKFTDDGAVAVSV 508



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 27/141 (19%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+ EDN+IN ++ +  ++     +    +G EAV        D+ILMD+ MPVM GL+
Sbjct: 618  RVLVAEDNRINRLLIEKYLQDEPVELAFAMDGSEAVEQAVDFRPDVILMDMSMPVMTGLE 677

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII-AMTANALSESAEECFANG 979
            AT  IR  E            I Q              PII A+TANA     E C   G
Sbjct: 678  ATEAIREME------------IAQ--------------PIITALTANAFDSDREACLRAG 711

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            MD F+SKP+    L   L ++
Sbjct: 712  MDDFLSKPINRSDLIAVLRKH 732



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 57/115 (49%), Gaps = 6/115 (5%)

Query: 567 KHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKY 626
           K  DD    VS       D    V +R  V D+GIGI       +F ++ Q  A   R++
Sbjct: 497 KFTDDGAVAVSVNADHTRD---HVTLRFSVKDSGIGIAPEQQSRIFERFSQADAAITRRF 553

Query: 627 GGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL---PYQVSPIEENSDDPD 678
           GGTGLGL I + L E MGG +TV S++  G+TF+  L   P     + EN+   D
Sbjct: 554 GGTGLGLTISRLLCEAMGGDITVRSELGQGATFSAYLRMNPATGDAVVENAQISD 608


>gi|386013176|ref|YP_005931453.1| Histidine kinase [Pseudomonas putida BIRD-1]
 gi|313499882|gb|ADR61248.1| Histidine kinase [Pseudomonas putida BIRD-1]
          Length = 935

 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 104/165 (63%), Gaps = 2/165 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L       +    AK Q LATMSHEIR+PL GV+   E+LS T LD +Q
Sbjct: 434 DISARKQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRTVLDAQQ 493

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
           R  L  +  S   +LQLI D+LD+SK+E+G + LE ++F   ++V+ V+Q  +AA+  K 
Sbjct: 494 RDYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAARSKG 553

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
           L L   +   +P  +IGDV RIRQIL NL+SNA+KFT  G+V ++
Sbjct: 554 LQLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFTDCGRVVLR 598



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 27/157 (17%)

Query: 844  PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
            P   +A  P T+P     +L+ EDN IN ++ +  +++LG S+ +V++G +A+   Q ++
Sbjct: 802  PRDPAAPAPLTEPL-GLHVLVAEDNVINQLILRDQLEELGCSVTLVSDGEQALQTWQREH 860

Query: 904  YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
            +DL+L DV MP  +G + TR +R    T                           PI+  
Sbjct: 861  FDLLLTDVNMPGTNGYELTRALRRLGCTR--------------------------PIVGA 894

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            TANAL    E C A GMD  + KP   Q L  CL  Y
Sbjct: 895  TANALRGEEELCLAAGMDRCLIKPFNLQVLFNCLAPY 931



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 571 DPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
           D G  V     ++ D E +  +   V DTG GI E   P +F  + Q    H++   GTG
Sbjct: 591 DCGRVVLRARLLNRDGERSC-LLWQVSDTGKGIAEQDQPFIFDPFYQTEG-HSQVIPGTG 648

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           LGL IC++L +LM G+L + S++  GS+F+  LP +V+
Sbjct: 649 LGLPICQRLTQLMNGQLRLVSELGLGSSFSLTLPLEVA 686


>gi|452964323|gb|EME69366.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
          Length = 516

 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 100/173 (57%), Gaps = 2/173 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           EI  +K  E  L       EE  R K   LATMSHEIR+P+ GV+ M  +L+ + L  EQ
Sbjct: 124 EITDRKRAERMLIHAKDKAEEMARVKANFLATMSHEIRTPMNGVLGMLHLLTGSPLTPEQ 183

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA-AASLQKI 463
           R  L    SS   +L +INDILD SK+E+G MKLEA +F    +V  +L     A+  K 
Sbjct: 184 RDHLETAQSSARALLAIINDILDFSKLEAGQMKLEATRFDLHRLVDEMLALMKGAAADKG 243

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
           L L+  + D VP  + GD  R+RQ+LTNL+ NA+KFT +G V + +   P+ P
Sbjct: 244 LTLQARLGDGVPHHIAGDPTRLRQVLTNLMGNAVKFTEKGGVVVSVKAEPDGP 296



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 23/153 (15%)

Query: 847 SSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDL 906
           + A V ET   P   +LL EDN +N  +  +++++ G  + + +NG EA+ AV  + +DL
Sbjct: 383 TGAMVNETGDLPSLSVLLAEDNPVNQKLTTTLLRRWGQRVTLAHNGAEAIAAVAREPFDL 442

Query: 907 ILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966
           +LMDV MP MDGL+ATR IR+                        +     IPIIAMTA+
Sbjct: 443 VLMDVHMPGMDGLEATRRIRAM-----------------------AGPLAAIPIIAMTAD 479

Query: 967 ALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            L   A  C A GMD +V+KPV   +L   ++Q
Sbjct: 480 VLDGDAALCLAAGMDDYVAKPVEPARLLAAIKQ 512



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 8/118 (6%)

Query: 585 DLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMG 644
           D  A   +R +V DTGIGI   A P LF +++Q  +   R++GGTGLGL+ICK+LVE+MG
Sbjct: 294 DGPAPARLRFEVADTGIGIEPAAAPALFAEFVQADSSITRRFGGTGLGLSICKRLVEMMG 353

Query: 645 GRLTVTSKVHCGSTFTFILPYQVSP--------IEENSDDPDDLSDMADQDSVTDDVT 694
           G +   S    G+TF F LP   +         + E  D P     +A+ + V   +T
Sbjct: 354 GEIGFDSVPGEGTTFHFTLPLVAAAEDRDTGAMVNETGDLPSLSVLLAEDNPVNQKLT 411


>gi|118580477|ref|YP_901727.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503187|gb|ABK99669.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 738

 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 109/181 (60%), Gaps = 10/181 (5%)

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
           QV  R+   + R E A+  AKE          E   RAK + LA MSHEIRSP+ G++ M
Sbjct: 231 QVILRDISDRKRAEQALATAKEQ--------AEAASRAKSEFLANMSHEIRSPMNGIMGM 282

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
           A+++  T+L  EQR+ L V+ SS   +L LIN+ILDLSK+E+G ++LE + F  R  +  
Sbjct: 283 AQLMEYTELTDEQREYLNVIRSSSHGLLSLINNILDLSKIEAGKIELERSDFSLRASIDD 342

Query: 452 VLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
           +++   + +  K L +  DI    P  +IGD LR++QIL NL+ NAIKFT  G +GI + 
Sbjct: 343 IVKAHLSQIHDKGLTIRTDIPAAAPDTLIGDQLRLKQILLNLLGNAIKFTCRGGIGISVA 402

Query: 511 V 511
           V
Sbjct: 403 V 403



 Score = 93.2 bits (230), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 26/144 (18%)

Query: 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
           P   ILLV+D ++N++    ++++ GH++    +G EAV   + + +D ILMD+ MPVMD
Sbjct: 511 PALHILLVDDYEMNLLAVTRLLQRHGHTVVPARDGAEAVQKWEQEAFDAILMDIQMPVMD 570

Query: 918 GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
           G++ATR IR  E                   +G+  H    P+IA+T  AL E  +E   
Sbjct: 571 GMEATRTIRRRE-------------------AGTGRH---TPVIALTGRALQEEQDEIMG 608

Query: 978 NGMDSFVSKPV----TFQKLKECL 997
            G D  +SKP+     FQ+L+ CL
Sbjct: 609 QGFDGHISKPIQLGMLFQELRRCL 632



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 56/79 (70%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V +R DV DTGIGIP +A+  +F+ + Q  +   R+YGGTGLGL+IC +L ELM G++TV
Sbjct: 411 VRLRIDVTDTGIGIPTDAMERIFKPFTQADSSTTRQYGGTGLGLSICSRLAELMDGKITV 470

Query: 650 TSKVHCGSTFTFILPYQVS 668
            S+   GSTF+  LP+ VS
Sbjct: 471 ESREGSGSTFSVHLPFAVS 489


>gi|121998929|ref|YP_001003716.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590334|gb|ABM62914.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 1643

 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 8/169 (4%)

Query: 355  TELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
            TE+ +     E+  RAK + LA MSHEIR+PL  V+ ++++L  T LD+ Q+  L  ++S
Sbjct: 912  TEIKQAQEQAEQASRAKSEFLANMSHEIRTPLNAVIGLSQLLLETSLDKRQQDHLNKVLS 971

Query: 414  SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIAD 472
            S  ++L +INDILD SK+ESG ++L+   F   EVV H+         +K L L   +  
Sbjct: 972  SSRMLLGIINDILDFSKIESGQLELDTHTFDLHEVVDHLAALFGEVGHRKQLELVYSLPP 1031

Query: 473  DVPIEVIGDVLRIRQILTNLISNAIKFTPEG---KVGIKLYVVPEPPFA 518
             +P  ++GD LRI Q+LTNL+SNA KFTPEG   ++GI+L    EPP A
Sbjct: 1032 QIPCVLVGDSLRITQVLTNLLSNATKFTPEGGEVEMGIQLV---EPPKA 1077



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 47/75 (62%)

Query: 589  TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            +V +R  V DTGIG+ E  L  LFR + Q      R+YGG+GLGL I ++LVE MGG L 
Sbjct: 1079 SVTLRFFVRDTGIGMSEEQLGRLFRAFTQADTSTTRRYGGSGLGLVISRRLVERMGGALE 1138

Query: 649  VTSKVHCGSTFTFIL 663
             TSK   GSTF F L
Sbjct: 1139 ATSKPGQGSTFAFEL 1153



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 29/167 (17%)

Query: 835  EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            E+ DR +     S    P        +IL+ EDN+ N  VA  ++++ G  + VVNNG E
Sbjct: 1300 ERGDRAANMGPESMGHTPNLAGY---RILIAEDNETNQEVASLLLEKTGAQVQVVNNGAE 1356

Query: 895  AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
            A+ A      DLILMD+ MPV+DG +ATR +R            EAG             
Sbjct: 1357 ALEAAHEAPPDLILMDLQMPVLDGFEATRRLR------------EAGYGG---------- 1394

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                P++A++A       +   A GM + ++KP+  ++L   L  + 
Sbjct: 1395 ----PVLALSAAVTEGDQQRARAAGMGAHIAKPIDREQLYARLADHL 1437


>gi|312130024|ref|YP_003997364.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
 gi|311906570|gb|ADQ17011.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
          Length = 1076

 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 145/267 (54%), Gaps = 26/267 (9%)

Query: 247 IYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTF 306
           +Y H     EE I  K D + F    V  S++ K  +L+ G     E+  + +    + F
Sbjct: 464 VYKHTGYREEEVIHQKVD-QFFEDV-VDSSKNIKT-LLKSGNITNYEVRVKRKDGSIRQF 520

Query: 307 LIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEE 366
           ++ +  + ++ G  I V  +  DVT+ +R  +++ K +EE                  E 
Sbjct: 521 MLNIRMIKNEKGTPIEVEGVARDVTELLRSADELKKAKEE-----------------AEH 563

Query: 367 TMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDI 425
            ++ K Q LA MSHEIR+P+ G++ M ++L+ T+LD+ QR+ +  + +S + +L ++NDI
Sbjct: 564 LLKVKEQFLANMSHEIRTPMNGIIGMIDVLNETELDKSQREYVNTIRNSSETLLTILNDI 623

Query: 426 LDLSKVESGVMKLEAAKFRPREVVKH---VLQTAAASLQKILMLEGDIADDVPIEVIGDV 482
           LDLSK+E+G M +E   F  +E++K+   + +  AA    +L  E D    V   +IGD 
Sbjct: 624 LDLSKLEAGQMNVEKKPFDLKEMLKNLVALFKQKAAETNNLLKFEWD--PKVHPYIIGDR 681

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKL 509
           +R+ QIL+NL SNAIKFT  G V I++
Sbjct: 682 IRLLQILSNLTSNAIKFTQNGNVIIRI 708



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 12/131 (9%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E T ++R +V DTGIGI E     LF  + Q+     + +GGTGLGL I KQLVE+MGG 
Sbjct: 715 EKTQFLRFEVADTGIGISEENQKKLFTSFQQLDISTKKAFGGTGLGLVISKQLVEIMGGE 774

Query: 647 LTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQ-FQPRTL 705
           + +TSK+  GS F F LP  ++          ++ + A  D  T+    G+F+ F P+ L
Sbjct: 775 IGLTSKLGEGSVFWFTLPAGLAV-------EGEIHEKASAD--TEISIEGYFKDFSPKIL 825

Query: 706 GSLFSSNGTSR 716
             L   N  +R
Sbjct: 826 --LVDDNAINR 834



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 83/145 (57%), Gaps = 31/145 (21%)

Query: 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ-NYDLILMDVCMPVMDG 918
           PKILLV+DN IN  VA  ++K+    +   ++G++A+   Q   ++DLILMD+ MP MDG
Sbjct: 822 PKILLVDDNAINRKVAMEILKKANCHVIGADSGMKALDTFQNNPDFDLILMDIQMPEMDG 881

Query: 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFA 977
           ++ T+++R  E  G+                       ++P ++AMTA ++    E+  +
Sbjct: 882 IETTKILR--EKFGS-----------------------KLPKVVAMTAYSMENDREKFLS 916

Query: 978 NGMDSFVSKPV----TFQKLKECLE 998
           +GMD++++KP+      QK++ECL+
Sbjct: 917 SGMDNYLAKPIRANLLIQKVEECLK 941


>gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 945

 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 2/164 (1%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           + + TEL++     E   RAK Q LA MSHEIR+P+ GV+ M E+L +T L ++QR L  
Sbjct: 258 RERTTELHQAKEAAEAANRAKSQFLANMSHEIRTPMNGVLGMTELLLSTALTQKQRSLTE 317

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEG 468
            +  SG  ++ +IN+ILD SK+E+G +KLE  +F  R+ V+  +   A +  +K L L  
Sbjct: 318 TLHRSGTGLMDIINEILDFSKIEAGKLKLERIEFGLRQTVEDAVDLFAETAGRKHLELTC 377

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            +  D+P  VIGD +R+RQIL NL+ NAIKFT  G V + L +V
Sbjct: 378 FVPPDIPDTVIGDPVRLRQILLNLVGNAIKFTQSGDVAVTLELV 421



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 75/140 (53%), Gaps = 20/140 (14%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +LL EDN +N  VA +M++ LG +  +V NG EAV A+  +++DL+LMD  MP MDGL A
Sbjct: 670  VLLAEDNPVNREVAFTMLELLGCTTTMVENGREAVEALTNRSFDLVLMDCHMPEMDGLTA 729

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T LIR  E                      +   +   I+A+TANAL    E C A GMD
Sbjct: 730  TALIREQET--------------------QATQPRHTTIVALTANALQGDRERCLAAGMD 769

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP T   LKE L +  
Sbjct: 770  DYLSKPFTLTTLKEVLHRRL 789



 Score = 70.1 bits (170), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 43/70 (61%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           ++  + DTG+GIPE     LF+ + Q      RK+GGTGLGLAI KQL  LMGG + V S
Sbjct: 430 LKFRIRDTGVGIPEATQARLFQAFSQADNSTTRKFGGTGLGLAIVKQLALLMGGDVGVDS 489

Query: 652 KVHCGSTFTF 661
               GSTF F
Sbjct: 490 VSGQGSTFWF 499


>gi|303248480|ref|ZP_07334738.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490100|gb|EFL50020.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 667

 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/215 (38%), Positives = 116/215 (53%), Gaps = 12/215 (5%)

Query: 307 LIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEE 366
           LI V   +  SG   G   M  ++T++ R  E +          +  ET L       E 
Sbjct: 242 LIAVSSEYDASGHFTGSVGMFSNITERKRAEESL----------RLSETRLAAAKEAAET 291

Query: 367 TMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDI 425
             +AK + LA MSHEIR+PL G++ M ++L +T LD +QR  +   + SG  + +L+ DI
Sbjct: 292 ASKAKSEFLANMSHEIRTPLNGLLGMLQLLEDTDLDADQRDCVVTALDSGRRLTRLLTDI 351

Query: 426 LDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLR 484
           LDLS+VESG + L  A F  REV   +    A SL Q+ L LE  ++  VP  +IGD  R
Sbjct: 352 LDLSRVESGKLALVYAPFSLREVFASIQTVFATSLEQRGLTLEPTVSPAVPAMLIGDEGR 411

Query: 485 IRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAK 519
           IRQ+L NL+ NAIKFT  G + ++    P+P   K
Sbjct: 412 IRQVLLNLVGNAIKFTRTGGIFLEAGSSPDPETGK 446



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 21/143 (14%)

Query: 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
           K   +ILLVED +IN M    +++  GH++    +G +A+     + +D++L+D+ MP M
Sbjct: 541 KKGRRILLVEDERINRMAVGLLLRHQGHTVIEAASGQDALEIFGREPFDVVLLDIQMPGM 600

Query: 917 DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
           DGL+   L+R     G              P S +       PI+A+TA+A++   E   
Sbjct: 601 DGLETLALLRDTTIYG--------------PRSAT-------PIVALTAHAMAGDRERFL 639

Query: 977 ANGMDSFVSKPVTFQKLKECLEQ 999
             GMD +++KPV    L   L +
Sbjct: 640 EAGMDDYLAKPVEASALAAVLAR 662



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 38/62 (61%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP   +  +F  + QV A + R + G GLGL+I  +LV LM G+L + S+   
Sbjct: 453 VGDTGIGIPREKIKAVFEAFTQVDASNTRIHQGAGLGLSIVDRLVRLMDGQLWMDSEPGI 512

Query: 656 GS 657
           G+
Sbjct: 513 GT 514


>gi|422003900|ref|ZP_16351126.1| histidine kinase response regulator hybrid protein [Leptospira
           santarosai serovar Shermani str. LT 821]
 gi|417257447|gb|EKT86849.1| histidine kinase response regulator hybrid protein [Leptospira
           santarosai serovar Shermani str. LT 821]
          Length = 821

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 153/326 (46%), Gaps = 71/326 (21%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L++EI  ++  E EL +   I E+  + K   LA MSHEIR+P+ GV+ M ++L  TKL+
Sbjct: 409 LKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGTTKLN 468

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQ++ + ++  S   +LQ+INDILD SK+E+G + L+   F               S++
Sbjct: 469 DEQKEYVKILSVSAKSLLQIINDILDFSKIEAGKISLDKEVF---------------SIR 513

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEG 521
            +L       D++  +++  + + +QI   L         EGK  I+ YV  +       
Sbjct: 514 SVL-------DEIH-DLLYPLAKQKQIGLRL---------EGKFDIQEYVYGDQ------ 550

Query: 522 LKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNS 581
           L+ +   +    + +K   H     + S +N                       +S  N 
Sbjct: 551 LRLRQILWNLTGNGIKFTNHGEVVLSVSQEN-----------------------ISKNN- 586

Query: 582 MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
                   + I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I KQLVE
Sbjct: 587 --------ISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQLVE 638

Query: 642 LMGGRLTVTSKVHCGSTFTFILPYQV 667
           L GG L + SK   GS FTF + Y +
Sbjct: 639 LQGGTLNLESKEGFGSKFTFAITYDI 664



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 32/176 (18%)

Query: 825  NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
            +E +KI E ++  D  S   +++S  +         KIL+ EDN+ N ++ +  +K+LG+
Sbjct: 668  SEIEKILEAEKTKDLESAYSNATSNGM---------KILVAEDNETNCLLIERALKKLGY 718

Query: 885  SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQ 944
               VV NG E +  +Q   +DLILMD+ MP +DG++AT+ IRS +    +          
Sbjct: 719  DPVVVRNGREVIEKMQLYFFDLILMDIHMPEVDGIEATKWIRSQKQNAEFPI-------- 770

Query: 945  AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                           IIA+TA+ +  + E   + GM+  ++KP+    LK+ L+ +
Sbjct: 771  ---------------IIALTADVIESNKEIYISKGMNDCLTKPLDLPLLKKSLDFW 811


>gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain-containing protein [Marinomonas
            mediterranea MMB-1]
 gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
          Length = 2241

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 128/218 (58%), Gaps = 22/218 (10%)

Query: 312  PVFSKSGETIGVNYMGMDV------TDQVRKREKMAKLREEIAVQKA------------K 353
            P+  K G+ IG+ Y+  ++      TD+++    +A  +  I+++ A            +
Sbjct: 1440 PIL-KRGKIIGLLYLENNLVPAAFTTDRLQALNILAG-QAAISIENALVYETLEKRVTDR 1497

Query: 354  ETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMI 412
              ELN    + EE  RAK + LATMSHEIR+P+  ++ ++ +   T L+ +Q+  +  ++
Sbjct: 1498 TEELNVAKVLAEEANRAKSLFLATMSHEIRTPMNAIIGLSRLTLKTPLNLDQKDFMDKIL 1557

Query: 413  SSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIA 471
             S + +L +INDILD SK+E+  M LE  +F  + V+  ++   A  + +K L L  DI 
Sbjct: 1558 ESAEGLLGIINDILDYSKIEAHKMVLEQTRFELQSVMSRIVTICALKAKEKALELHVDID 1617

Query: 472  DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             DVP  ++GD LR++QILTNL+SNAIKFT +G VGI++
Sbjct: 1618 SDVPALLLGDPLRLQQILTNLVSNAIKFTEKGFVGIRV 1655



 Score = 89.7 bits (221), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 24/169 (14%)

Query: 833  MQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNG 892
            ++  P+R+  + +++     E       ++LLVEDN++N  V    +++ G  +D+  NG
Sbjct: 1878 VEHYPNRLVPAHAATDELPVEGAVLRHKRVLLVEDNELNSRVVLGYLEESGVMLDMAENG 1937

Query: 893  VEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
             +A+  VQ  +YD++LMD+ MP+MDG+ ATR IR+  D                      
Sbjct: 1938 QQALEKVQEVHYDVVLMDLQMPIMDGITATRKIRAVFDE--------------------- 1976

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
               K +PI+AMTA+A  E  + C   GM+ +++KPV   +L   ++++ 
Sbjct: 1977 ---KTLPIVAMTAHASVEDKQRCLEAGMNDYITKPVDIDELYGVMKRHM 2022



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 62/95 (65%), Gaps = 2/95 (2%)

Query: 581  SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
            S+++  E T  +R DV D+G+G+ +     LF+ + Q  A   RKYGGTGLGLAIC+QLV
Sbjct: 1656 SLEQTQEGTPQVRFDVTDSGVGLTQEHQRELFKPFTQADASITRKYGGTGLGLAICRQLV 1715

Query: 641  ELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSD 675
            ELM G++ V S +  GSTF F +P  V   +E++D
Sbjct: 1716 ELMKGQIWVRSHLGKGSTFGFRIP--VHSYQEDND 1748


>gi|392424053|ref|YP_006465047.1| PAS domain S-box [Desulfosporosinus acidiphilus SJ4]
 gi|391354016|gb|AFM39715.1| PAS domain S-box [Desulfosporosinus acidiphilus SJ4]
          Length = 1367

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 107/179 (59%), Gaps = 2/179 (1%)

Query: 338  EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
            E  A L EEI+  +    EL  +    E   +AK Q LA MSHEIR+P+ G+    E+L+
Sbjct: 825  ETNATLEEEISDHQRTALELQASKRAAEAANQAKSQFLANMSHEIRTPMNGIFGFLELLN 884

Query: 397  NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT- 455
            +++L + QR+ +  + SS + +L LINDILDLSK+ESG + LE   F  R  ++  +   
Sbjct: 885  HSQLSQVQREYIREVKSSSETLLHLINDILDLSKIESGKLTLENLNFNLRTTIEDAMSLF 944

Query: 456  AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
               + +K L L   I  +VP EV GD  R++QIL+NLISNA+KFT  G+V I +  V E
Sbjct: 945  VPTAYEKHLELYTQIKANVPDEVSGDPSRLKQILSNLISNALKFTENGEVSIVVETVEE 1003



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 81/147 (55%), Gaps = 24/147 (16%)

Query: 853  ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVC 912
            E +   KPK+LLVEDN++N  V  + +K  G + DV  +G EA   +  ++YDL+ MD  
Sbjct: 1244 ENQSVLKPKLLLVEDNEVNRKVVLATLKSRGMTCDVAMDGQEAYEVMLKKDYDLVFMDCQ 1303

Query: 913  MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            MPVMDG +AT+ IR  E                      S H K   IIAMTANA+    
Sbjct: 1304 MPVMDGYEATKKIREAE---------------------GSKHTK---IIAMTANAMMGDK 1339

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQ 999
            E+C   GMD ++SKP+ F+++ + +++
Sbjct: 1340 EKCLEAGMDDYISKPIDFEEMFKIIDE 1366



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 48/76 (63%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            IR +V DTGIGIP+     +FR + Q  A   RKYGGTGLGLAI K+LV +M G + V S
Sbjct: 1010 IRFEVRDTGIGIPKEDTKRIFRPFDQADASTTRKYGGTGLGLAITKELVTIMKGTIGVDS 1069

Query: 652  KVHCGSTFTFILPYQV 667
                GSTF F   +++
Sbjct: 1070 VPGQGSTFYFTAKFKI 1085


>gi|388543443|ref|ZP_10146734.1| two component system, sensor kinase GacS [Pseudomonas sp. M47T1]
 gi|388278755|gb|EIK98326.1| two component system, sensor kinase GacS [Pseudomonas sp. M47T1]
          Length = 904

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 201/442 (45%), Gaps = 88/442 (19%)

Query: 573  GTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLG 632
            GT V+     DE+ +  V +R  V DTGIG+    + TLF+ + Q     +R+ GGTGLG
Sbjct: 407  GTIVARAMLEDEN-DNGVQLRISVQDTGIGLSNADVRTLFQAFSQADNSLSRQPGGTGLG 465

Query: 633  LAICKQLVELMGGRLTVTSKVHCGSTF--TFILPYQVSPIEENSDDPDDLSDMADQDSVT 690
            L I K+L+E MGG + V S    GS F  +  LP      E+   +P +   +A  +   
Sbjct: 466  LVISKRLIEQMGGEIGVDSTPGEGSEFWISLRLPKARDDAEDLPSEPLNGRRIAIVEH-- 523

Query: 691  DDVTAGFFQFQPRTLG---SLFSSNGTSRSKKLLPNSIGFASAHKVNG-------FSETS 740
             ++     Q Q   LG   S F+S      +KL     G ASA ++ G          TS
Sbjct: 524  HELARQALQHQLEDLGLDVSTFAS-----VEKL----AGGASAAQLAGQPFDLAVLGLTS 574

Query: 741  YSFPSNNRQKETAPLED-ACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTS 799
            Y    +   ++   +E  AC V  +  T    E +  H   P                  
Sbjct: 575  YDVGPDRLAEQVRDIEQFACKVLVLCPT---TEQALFHPAVP------------------ 613

Query: 800  WFQNPATESTSHSEANREMIQ-TSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKP 858
               NP ++  +     R++ +  S    P+++     + D  +  P  + A         
Sbjct: 614  ---NPHSQLQAKPACTRKLRRGLSDLINPKRL-----RND--THEPLGNRA--------- 654

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
             P++L V+DN  N+++ +++++ LG  +  V++G  A+ AVQ + +DL+LMDV MP MDG
Sbjct: 655  -PRVLCVDDNPANLLLVQTLLEDLGAEVLAVDSGTTAIKAVQDERFDLVLMDVQMPGMDG 713

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
             + T  IR +E T            Q  P+         +PI+A+TA+A++        +
Sbjct: 714  RETTEKIRLWEAT------------QTGPA---------LPIVALTAHAMANEKRALLQS 752

Query: 979  GMDSFVSKPVTFQKLKECLEQY 1000
            GMD +++KP++ ++L + + ++
Sbjct: 753  GMDDYLTKPISDRQLAQVVLKW 774



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 87/135 (64%), Gaps = 1/135 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+PL G++    +L  ++L   Q   LG +  S D +L +IN+ILD SK+
Sbjct: 275 EFLANMSHEIRTPLNGILGFTHLLQKSELTPRQLDYLGTIEKSADSLLGIINEILDFSKI 334

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + L++  F  R++++  L   A A+  K L L   +  D P+ +IGD LR++QILT
Sbjct: 335 EAGKLVLDSIPFNLRDLLQDTLNILAPAAHAKQLELVSLVYRDTPLSLIGDPLRLKQILT 394

Query: 491 NLISNAIKFTPEGKV 505
           NL+SNAIKFT EG +
Sbjct: 395 NLVSNAIKFTREGTI 409


>gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1320

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 356 ELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISS 414
           EL++ +   E + +AK Q LA MSHEIR+P+ GV+ +  +L +T LD EQR+L  ++  S
Sbjct: 649 ELDRALAQAEASTQAKSQFLANMSHEIRTPMNGVIGITGLLLDTDLDPEQRRLAEIVRDS 708

Query: 415 GDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADD 473
           G+ +L LINDILD SK+E+G ++LE  +F  R +++ VL+  A +  +K L L   IA  
Sbjct: 709 GENLLALINDILDFSKIEAGKLELEHLEFDLRLLIEEVLEMMAFNAHEKDLELTYRIAPQ 768

Query: 474 VPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           VP  V GD   +RQ++ NL+ NAIKFT  G+VG++L
Sbjct: 769 VPTAVRGDPRYLRQVIVNLMGNAIKFTERGEVGLQL 804



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 24/171 (14%)

Query: 834  QEKPDRISQSPSSSSAEVPET-KPK-PKPKILLVEDNKINVMVAKSMMKQLGH-SIDVVN 890
            +E+P     SP      +P   +P  P+ ++LLV+DN  N +VA+ ++++LG+   D+  
Sbjct: 1033 RERPVLEPVSPPVGPDRIPGIGRPAHPEARLLLVDDNPTNQIVARGILEKLGYPKPDIAC 1092

Query: 891  NGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950
            NG+EA+ A+    YDL+LMD  MP MDG +  RLIR            EAG+        
Sbjct: 1093 NGLEALEALSRARYDLVLMDGQMPEMDGFETARLIRR----------GEAGVLD------ 1136

Query: 951  SSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                   +PI+AMTA  +      C   GM++++SKPV   +L   + ++ 
Sbjct: 1137 -----PHVPIVAMTALVMPGDVRRCLDAGMNAYISKPVQPHELSRIIAEHL 1182



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 51/78 (65%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           IR +V+D+GIGIPE+ L  LF  + QV +   R++GGTGLGL I KQL +LM G + + S
Sbjct: 816 IRFEVHDSGIGIPEDQLGKLFTAFNQVDSSTTRRFGGTGLGLVIAKQLAQLMNGDIGLES 875

Query: 652 KVHCGSTFTFILPYQVSP 669
           +   GS F F   ++ SP
Sbjct: 876 RPGQGSRFWFTAEFECSP 893


>gi|385301162|gb|EIF45374.1| putative response regulator protein [Dekkera bruxellensis AWRI1499]
          Length = 972

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 183/382 (47%), Gaps = 65/382 (17%)

Query: 332 DQVRKREK---MAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGV 388
           D+VR R K   +AK++ + A Q+A+     KT+ I           A +SHE+R+PL G+
Sbjct: 331 DRVRARTKELEIAKIQADAARQQAEAANEAKTVFI-----------ANISHELRTPLNGI 379

Query: 389 VSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448
           + M  +    K  ++ R  L ++  SG+L+L ++  +L  SK +    KL+   F   EV
Sbjct: 380 LGMTSVAMAEKDKKKIRSSLDLIFRSGELLLHILTQLLTFSKNQLDKTKLQRRNFVLLEV 439

Query: 449 VKHVLQTAAAS-----LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE- 502
              +      +     +  I+ L+ D++  + +  +GD  RI QI+ NL+SN++KFTP+ 
Sbjct: 440 ASQIESIFGKTATDQDVNLIVQLKPDLSRKMIM--LGDSNRIIQIVMNLVSNSLKFTPKN 497

Query: 503 -----------------------GKVGIK-LYVVPE--PPFAKEGLKQKSKAYQSATDAV 536
                                  GKV IK ++  PE  PPF  E L+++      + D++
Sbjct: 498 GTVXVVIKVLGYYDEKRSKEENYGKVYIKGVHDAPEINPPFHPESLRRR---LSDSGDSM 554

Query: 537 KEEKHQPKSQTASDQNGFHDKKHGEGYQDHK--HDDDPGTPVSHGNSMD----------- 583
           K  K +    T S +   +       Y   K   D++ G  ++  ++ D           
Sbjct: 555 KSSKSEWTLNTLSSEEYHNQLADAYNYSVSKSYFDEEDGDFLNIEDTSDSDNHRLHECHE 614

Query: 584 -EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
            +D++    +R  V DTG GI ++    +F  ++Q     +R +GGTGLGL+ICKQ  +L
Sbjct: 615 FKDVKKYWVVRFSVSDTGTGIEKSLQEKIFEAFVQGDQTLSRSHGGTGLGLSICKQFAKL 674

Query: 643 MGGRLTVTSKVHCGSTFTFILP 664
           M G L + S V  GSTFTF +P
Sbjct: 675 MHGTLILNSVVGQGSTFTFTVP 696



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 31/150 (20%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQC-----QNYDLILMD 910
            K   + L+ EDN +N  V K MMK  G++ + +  +G EA+  V+      + +DLILMD
Sbjct: 821  KAHLRFLVAEDNLVNQEVVKRMMKLEGYTDVTLACDGFEAIDLVKXSQKAGKKFDLILMD 880

Query: 911  VCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970
            V MP +DG+ ATR+IR            + G                 PI+A+TA A   
Sbjct: 881  VQMPKLDGISATRIIRH-----------QLGYT--------------YPIVALTAFADKS 915

Query: 971  SAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            + +EC   GM  F+SKPV    L++ ++Q+
Sbjct: 916  NEDECIEVGMSGFLSKPVRRNLLRKIIKQF 945


>gi|189425740|ref|YP_001952917.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421999|gb|ACD96397.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 645

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 113/174 (64%), Gaps = 8/174 (4%)

Query: 340 MAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNT 398
           + +LR EI +++  ET+L +     E    AK Q L+ MSHEIR+P++GV+ M E+L  T
Sbjct: 233 VTELRHEIRMRQQVETDLAQAKCAAEAANTAKSQFLSNMSHEIRTPMSGVLGMTELLGFT 292

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
           +L  EQ + L  + +S D +L +INDILDLSK+E+G ++LEAA F  ++ ++    T A 
Sbjct: 293 ELTPEQHEYLNDIKASADNLLSIINDILDLSKIEAGKIELEAANFSLQQCIR---TTTAM 349

Query: 459 SLQKI----LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            + +I    L +E  I+ ++P  V GD LR++QIL NL+SNA+KFT  G++ I+
Sbjct: 350 QMPRILEKHLQIETKISPEIPEVVNGDQLRVKQILLNLLSNAVKFTAHGQISIQ 403



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 24/155 (15%)

Query: 846 SSSAEVPETK-PKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
           SS  ++P+   P  KP KIL+ EDN +N+  A+ ++++ GH      NG +A+   Q  +
Sbjct: 499 SSDHQLPDHPLPHRKPLKILVAEDNPLNLRAAELLLQKAGHHPQCAENGQQALELWQRGD 558

Query: 904 YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
            DLILMD+ MP M G +A  +IRS E                    G+  H    P+IA+
Sbjct: 559 IDLILMDLHMPCMSGAEALLVIRSAEQ-------------------GTGKH---TPVIAL 596

Query: 964 TANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
           TA+AL  + E     G D++++KP   ++L E L+
Sbjct: 597 TADALKGTREALLQQGFDAYLAKPFRLEELLETLD 631


>gi|374301782|ref|YP_005053421.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554718|gb|EGJ51762.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
          Length = 549

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 120/195 (61%), Gaps = 6/195 (3%)

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
           + R +E+ AKLR+EI  +   E  L +     E   +AK + LA MSHEIR+P+ GV+ M
Sbjct: 142 EARVQERTAKLRDEIDARTLAEQALRQAKAEAEAASQAKSEFLAKMSHEIRTPINGVIGM 201

Query: 392 AEILSNTKLDREQRQL--LGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449
           AE+    +  RE R L  LG++ +SG  +L++INDIL+LSK+E+G ++LEA  F  R  +
Sbjct: 202 AEL--ALRASREPRILEYLGLIKTSGTQLLRIINDILNLSKIEAGKVELEARPFDLRGDL 259

Query: 450 KHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
           +  L T A S+Q K L L   +  D+P  ++GD  R+RQ++TNL+ NA+K+T +G + + 
Sbjct: 260 EDTLATLAPSVQAKSLRLVHTVDGDIPAHLVGDSARLRQVITNLVGNAVKYTHKGLITLS 319

Query: 509 LYVVPEPPFAKEGLK 523
           + +  E      G++
Sbjct: 320 VRLADEAADQSGGMR 334



 Score =  103 bits (257), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 24/145 (16%)

Query: 856 PKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMP 914
           P+ +P K+LL EDN+IN +VA  +++  GH++  V NG+EA+ A++ + + L+LMDV MP
Sbjct: 426 PRLRPCKVLLAEDNEINRLVALDLLRMRGHTVTAVKNGLEALEALRHEPFSLVLMDVRMP 485

Query: 915 VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE 974
            MDG++AT+ IR          A EAG               R+PI+A+TA AL    E 
Sbjct: 486 WMDGIEATKRIR----------AGEAG-------------DPRVPIVALTAYALDGDRER 522

Query: 975 CFANGMDSFVSKPVTFQKLKECLEQ 999
             A GMD ++SKP+  +KL   +++
Sbjct: 523 FLAAGMDDYLSKPIDMEKLDRVIDR 547



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 40/66 (60%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGIP++ L  +F  + QV++       GTGLGLAI +  VELM GR+   S+   
Sbjct: 339 VRDSGIGIPQDKLADIFESFTQVNSPEMINSAGTGLGLAISRHYVELMDGRIWAESEPGT 398

Query: 656 GSTFTF 661
           GS F F
Sbjct: 399 GSIFFF 404


>gi|170727319|ref|YP_001761345.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812666|gb|ACA87250.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1340

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 175/362 (48%), Gaps = 64/362 (17%)

Query: 166 DTVEYWKQRALD-------LEKMLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILK 218
           DTVE+W +  +D       L + LE   + E  ++E+L      L +Q            
Sbjct: 428 DTVEHWVKDVIDDLAIGVQLTRNLELQKKTELKVVEQLE-----LNRQ------------ 470

Query: 219 RADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVEIFSGAGVKE 275
                   +L   P  M +++ +  Y  +   +  F  L E DI+G T  +IF     ++
Sbjct: 471 --------ILDAIPNPMYYRNVDSEYIGVNESFTSFFGLFEADIIGSTPKDIFEAETAQQ 522

Query: 276 SQDFKREVLEKGLPAKREITFETELFGS----KTFLIYVEPVFSKSGETIGVNYMGMDVT 331
            +D + ++LE        + +E  L  +    +  ++Y    FS  G+  GV  + +DVT
Sbjct: 523 FEDSEAKLLEN----IGSLDYEARLVNADGIQRDVMVYEATFFSTKGDPNGVVGLLLDVT 578

Query: 332 DQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVS 390
           +    R++M     E+ ++KAKE          +E  +AK   LA MSHEIR+P+  ++ 
Sbjct: 579 E----RKQM-----EVELRKAKEA--------ADEVSKAKGDFLANMSHEIRTPMNAIIG 621

Query: 391 MAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK 450
           M+ +  N  L+ +QR  +  +  +   +L +INDILD SK+E+G +  E   FR  EV+ 
Sbjct: 622 MSHLALNADLNPKQRGYVSKIDMAAKSLLGIINDILDFSKMEAGKLVTEDVDFRLDEVLD 681

Query: 451 HVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK--VGI 507
           ++    A    +K L    DI   +P+ ++GD LRI Q+L NL  NAIKFT  G+  VG+
Sbjct: 682 NLTNIIAVKAEEKGLEFLFDIDPHIPLALVGDPLRIGQVLINLCGNAIKFTDSGEVVVGV 741

Query: 508 KL 509
           KL
Sbjct: 742 KL 743



 Score = 90.1 bits (222), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 73/140 (52%), Gaps = 24/140 (17%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +LLVEDN+ N  VA  MM+     I V NNG EA+  ++ + + L+LMD+ MPVMDG+ A
Sbjct: 994  LLLVEDNETNQEVAMGMMEPFNVDITVANNGQEALDKLEEKEFQLVLMDMQMPVMDGITA 1053

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T  IR                         ++ +  +PI+AMTANA+    + C   GM+
Sbjct: 1054 TINIR------------------------KNDKYNDLPIVAMTANAMESDVQNCKQAGMN 1089

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
              + KP+ F  LKE L +Y 
Sbjct: 1090 DHIGKPIDFTILKEKLRKYI 1109



 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           ++ +V D+GIG+ +     LF+ + Q  A   RKYGGTGLGL I K+LVE+MGG++ VTS
Sbjct: 753 LQFNVRDSGIGLSQEQQDKLFKSFSQADASITRKYGGTGLGLTISKRLVEIMGGKIWVTS 812

Query: 652 KVHCGSTFTFIL 663
               GSTF+F L
Sbjct: 813 DEGQGSTFSFTL 824



 Score = 46.2 bits (108), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 28/133 (21%)

Query: 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMPV 915
           KP +L+V+DN +   +  +++  +  S   V+NG EA+ A++ +N   Y+LI MD  MP 
Sbjct: 846 KP-VLIVDDNDVAREILVNLLTMMKFSPSAVSNGQEAISAIESENINPYELIFMDWNMPG 904

Query: 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
           ++G++A + I++                         N  K+  II +TA        E 
Sbjct: 905 INGIEAIKKIKAL------------------------NLIKQPKIILVTAYGREVGMTED 940

Query: 976 FANGMDSFVSKPV 988
             + +D  + KPV
Sbjct: 941 IEHLLDGIIIKPV 953


>gi|380092955|emb|CCC09192.1| putative histidine kinase group protein [Sordaria macrospora
           k-hell]
          Length = 1427

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 160/316 (50%), Gaps = 30/316 (9%)

Query: 218 KRADNFLHFVLQNAPVVMGHQDKE-----LRYRFIYNHF-PSLHEEDILGKTDVEIFSGA 271
           KR    L  V+ ++ + M   D +     L    I++   P L     +GK   E+F+  
Sbjct: 624 KRTRQQLRSVIAHSRMTMFAVDPDRKVTLLEGSLIWDALSPELSASWFIGKDVYEVFNSL 683

Query: 272 GVK----ESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSK---SGETI--- 321
             +    ++  F  + LE  L  K  +  +   F  + +    +P+  +   +G +I   
Sbjct: 684 NQQLPDGQTPAF-LQPLESILGGKSPVELQDHKFAGRWYRTGFQPILRRDPITGNSIENF 742

Query: 322 --GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMS 378
             GV    MDVT +++ RE+      +I  Q  ++ +L       +E  R K Q LA MS
Sbjct: 743 VEGVMGFIMDVT-ELKDRER------DIEAQVLEKRQLLANEAAAKEASRLKSQFLANMS 795

Query: 379 HEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKL 438
           HEIR+P+TGV+ MAE+L +  LD EQR+L   +  S + +L +INDILD SK+ESG + +
Sbjct: 796 HEIRTPITGVIGMAELLLDVGLDAEQRELTENIFRSANALLTVINDILDFSKIESGRLDI 855

Query: 439 EAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIE--VIGDVLRIRQILTNLISN 495
           E  +F    V++ V +  + + + K L    +I  D+ ++  V+GD  R+RQ+L NL  N
Sbjct: 856 EEVQFSLAVVIQEVSKMLSFTAERKGLTFNYEICSDIALDLVVMGDPGRLRQVLCNLAQN 915

Query: 496 AIKFTPEGKVGIKLYV 511
            IKF  EG V + ++V
Sbjct: 916 GIKFCHEGHVKLNVFV 931



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 26/145 (17%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH------AVQCQNYDLILMDVCMPV 915
            IL+VEDN+IN  +A   +K+LG  +    NG EA+       A + +  D+ILMDV MP+
Sbjct: 1086 ILVVEDNEINQQIAIKTIKKLGFEVAAAWNGKEALEYLSEASAGKKRKPDIILMDVQMPL 1145

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            +DG   T L+R                   +P      + K +PI+AMTA+A+    E+C
Sbjct: 1146 IDGYLCTHLLR-----------------HHIPYR---TYVKDVPIVAMTASAIQGDKEKC 1185

Query: 976  FANGMDSFVSKPVTFQKLKECLEQY 1000
               GMD ++SKPV  + L++ L ++
Sbjct: 1186 KRAGMDDYLSKPVKSKTLEKMLLRW 1210



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 1/93 (1%)

Query: 582  MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
            ++++   T+ ++  + DTGIGI E  L  LF+ + Q  A  ARK+GGTGLGL I K L+E
Sbjct: 931  VEQETNDTIEVKFVIQDTGIGIEEEVLKGLFQPFSQGDASTARKFGGTGLGLTISKNLLE 990

Query: 642  LMGGRLTVTSKVHCGSTFTFILPYQVSPIEENS 674
            LM GR+ + SK   G+T TF +P++  P + NS
Sbjct: 991  LMNGRMALASKRGEGTTATFWIPFK-KPQKANS 1022


>gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1625

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 138/270 (51%), Gaps = 22/270 (8%)

Query: 242  LRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELF 301
            L + F  NH P+L  E I     +E +         +  +   EKG+   +E  F +   
Sbjct: 815  LIHDFEVNHNPTLSSELI--SKSLECYYKEDRSRVSNAFQACAEKGVAYDQEFPFVSARG 872

Query: 302  GSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTI 361
                      PV+  SG  + V    MD+T+                  K  + +L +  
Sbjct: 873  RRLWVRTAAWPVYD-SGRIVRVAGHIMDITEL-----------------KQSQLDLQEAR 914

Query: 362  HITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQ 420
               +E  RAK + LA MSHEIR+P+ GV+ M ++L +T+L  EQR L   + SSG+ +L 
Sbjct: 915  DKAQEATRAKSEFLANMSHEIRTPMNGVIGMTDLLMDTELRPEQRSLAESIQSSGEALLA 974

Query: 421  LINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVI 479
            LINDILD SK+E+G ++LE+  F  R +++ +    A    +K L L      DVP +V 
Sbjct: 975  LINDILDFSKIEAGRLELESVDFNLRYLLEDLASLMAVRADEKGLELICLPDPDVPAQVQ 1034

Query: 480  GDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            GD  R+RQILTNL+ NAIKFT +G+V +++
Sbjct: 1035 GDPGRLRQILTNLVGNAIKFTHQGEVVVRV 1064



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 99/164 (60%), Gaps = 19/164 (11%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            K K  +L+ EDN +N  VA  ++ ++G S D+V+ G++AV A+Q Q+YDL+LMDV MP M
Sbjct: 1320 KFKGHVLVAEDNPVNQKVAVGLLNKMGLSADIVDTGLKAVEALQNQSYDLVLMDVQMPEM 1379

Query: 917  DGLKATRLIRSFED--------TGN--WDAAA--EAGIEQAMPSSGSSNHFK-------R 957
            DGL+AT+ IR  E         TG+  W++     +  E   PS   S + K       +
Sbjct: 1380 DGLEATQEIRRMEHGTEEREQRTGDRRWESQPLNPSTPEYHNPSIPKSFNPKIPQSLNPK 1439

Query: 958  IPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            IPIIAMTA A+++  + CF  GMD +VSKPV+ Q+L + L ++ 
Sbjct: 1440 IPIIAMTAGAMNQDRDRCFEAGMDDYVSKPVSHQELLKVLNRWL 1483



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 45/66 (68%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIPE+ +  LF K+ QV A   RK+GGTGLGLAI +QL E+MGG + V S+   
Sbjct: 1080 VQDTGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQSEYGR 1139

Query: 656  GSTFTF 661
            G  F F
Sbjct: 1140 GCKFWF 1145



 Score = 41.2 bits (95), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 29/141 (20%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV-----QCQNYDLILMDVCMPVM 916
            IL+V+DN+ N+ + K  ++  G  ++  + G EA+  +     +  ++ + ++D+ MP M
Sbjct: 1171 ILIVDDNETNLEILKKQLEAWGVEVEQASGGHEALRILDRVYSEGNSFAMAILDMHMPAM 1230

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG                    E G  Q +  SG    F  +P++ +T+      A+   
Sbjct: 1231 DG-------------------GELG--QRIKKSGK---FNDLPLVMLTSLGRPGDAKIFE 1266

Query: 977  ANGMDSFVSKPVTFQKLKECL 997
              G +++++KPV   +L + L
Sbjct: 1267 EQGFNAYLNKPVRQSELFDTL 1287


>gi|427707466|ref|YP_007049843.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
 gi|427359971|gb|AFY42693.1| multi-sensor hybrid histidine kinase [Nostoc sp. PCC 7107]
          Length = 1567

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/180 (40%), Positives = 111/180 (61%), Gaps = 12/180 (6%)

Query: 333  QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
            + R+RE++    +  A+Q+AK           E   RAK + LA MSHEIR+P+  V+ M
Sbjct: 862  ETRQREELT--LKNFALQQAKRQ--------AEAANRAKSEFLAMMSHEIRTPMNAVIGM 911

Query: 392  AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
             E+L +T L  +QR  +  + +SGD +L +INDILD SK+ESG ++LE   F  +  V+ 
Sbjct: 912  TELLLDTDLTPQQRDFVETVHTSGDALLTIINDILDFSKIESGRLELEEKPFDLKACVEQ 971

Query: 452  VLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
            V+   A  + QK + L   I   VP ++IGD+ R+RQ+L NL++NAIKFT +G+V + +Y
Sbjct: 972  VIDLLAPKAAQKQIELIYLIHPQVPTQIIGDITRLRQVLMNLLNNAIKFTQQGEVVLSVY 1031



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 23/142 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ ED+ +N  VA  M++++G+ +DVV +G E + A+Q Q YD++LMD+ MP MDGL+
Sbjct: 1307 RILVAEDSLVNQKVALLMLQKIGYQVDVVGDGREVIQALQHQPYDVVLMDIHMPEMDGLE 1366

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
             +++I     +  W+A+                   R  IIA+TANA+    E C A GM
Sbjct: 1367 TSQII-----SQQWEAST------------------RPYIIAITANAMRGDREACLAAGM 1403

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D ++SKP+   +L + L +  P
Sbjct: 1404 DDYISKPIQMAELVKALRKCQP 1425



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 578  HGNSMD-EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAIC 636
            + N ++ ++L+ +  I   + DTGIGI    +  LF+ + Q  A   R YGGTGLGL I 
Sbjct: 1031 YANHLETQNLDTSCKILFSIQDTGIGITPEKMARLFQPFAQADASMTRLYGGTGLGLVIS 1090

Query: 637  KQLVELMGGRLTVTSKVHCG 656
            ++L E+M G L V S+   G
Sbjct: 1091 QRLSEMMNGSLWVESRGCIG 1110


>gi|381160603|ref|ZP_09869835.1| PAS domain S-box [Thiorhodovibrio sp. 970]
 gi|380878667|gb|EIC20759.1| PAS domain S-box [Thiorhodovibrio sp. 970]
          Length = 785

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 104/174 (59%), Gaps = 2/174 (1%)

Query: 341 AKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTK 399
           A+L  EI  +   E +L       E   RAK + LA MSHEIR+PL GV+ M ++L ++ 
Sbjct: 522 ARLIGEIVARSLAEKQLKHAKESAEAASRAKSEFLANMSHEIRTPLNGVMGMLQLLEDSG 581

Query: 400 LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH-VLQTAAA 458
           LD E  +   + + S   +L +INDILD SKVE+G + L  A F    ++K  VL     
Sbjct: 582 LDAESSEYANIALESSHSLLTVINDILDFSKVEAGKLDLTLAPFGIDSLLKALVLTFTTQ 641

Query: 459 SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           +  K + L+  IA DVP EV+GD+ R+RQ+L NL+ NA+KFT +G V I++ V+
Sbjct: 642 TRSKGIALDYRIAADVPNEVVGDMARLRQVLFNLVGNAVKFTDQGGVRIEVRVL 695



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIPE  +  LF  + Q      RK+ GTGLGL+I K+LV+LM G + + S    
Sbjct: 709 VTDTGIGIPEEQINDLFEPFAQADGSLTRKFQGTGLGLSIVKRLVKLMDGAVGIESAPGR 768

Query: 656 GSTFTF 661
           G+   F
Sbjct: 769 GTAVQF 774


>gi|309791477|ref|ZP_07685981.1| PAS fold family protein [Oscillochloris trichoides DG-6]
 gi|308226474|gb|EFO80198.1| PAS fold family protein [Oscillochloris trichoides DG6]
          Length = 1306

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 106/174 (60%), Gaps = 2/174 (1%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILS 396
           + +A    +I  QK    EL +     E   RAK   LATMSHEIR+P+  V+ M  +L 
Sbjct: 627 DGLAIYLRDITAQKHTHMELVEAKEAAEAATRAKSDFLATMSHEIRTPMNAVIGMTGLLL 686

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
           +T L+ EQR  +  + +SGD +L +INDILD SK+ESG  +LE   F  R+ ++  L   
Sbjct: 687 DTPLNAEQRDFVETIRNSGDALLTIINDILDFSKIESGKFELEQQPFDLRDCLEAALDLV 746

Query: 457 AA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           +A + +K + L   IA +VP  + GDV R+RQIL NL++NA+KFTP G+V + +
Sbjct: 747 SARAAEKQIDLAYMIARNVPQAIEGDVTRVRQILVNLLANAVKFTPAGEVVVMI 800



 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 76/139 (54%), Gaps = 23/139 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL EDN +N  VA   + +LG+  DV  NG+E + A+  Q YD++LMDV MP +DGL+
Sbjct: 1051 RILLAEDNVVNQKVATKTLAKLGYRADVAANGLEVLDALARQRYDVVLMDVQMPELDGLE 1110

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            A+R IR+   T                        ++  IIAMTANA+    + C A GM
Sbjct: 1111 ASRRIRNEIAT-----------------------VRQPRIIAMTANAMQSDRDLCIAAGM 1147

Query: 981  DSFVSKPVTFQKLKECLEQ 999
            D ++SKPV  ++L   L +
Sbjct: 1148 DDYISKPVRIEELVAALSR 1166



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 51/80 (63%), Gaps = 2/80 (2%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +   V DTGIGIP + L  LF+ + QV A   R+YGGTGLGLAI ++L  LMGGR+ V S
Sbjct: 812 VHIAVRDTGIGIPADRLNRLFKAFSQVDASTTRQYGGTGLGLAISQRLCALMGGRMWVES 871

Query: 652 KVHCGST--FTFILPYQVSP 669
            V  GST  FT I P   SP
Sbjct: 872 TVGVGSTFHFTIIAPAAESP 891


>gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 816

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 107/164 (65%), Gaps = 10/164 (6%)

Query: 344 REEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDR 402
           R E+A+ +AK           E+   AK + LA MSHEIR+P+ GV+ MA++L  T+L  
Sbjct: 126 RAEVALTRAKAE--------AEQANVAKGEFLANMSHEIRTPMNGVIGMAQLLDGTELSV 177

Query: 403 EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQ 461
           +QR+ + +++ S D +++LIND+LD SK+E+G ++LE+  F+ R+ +   L + AA +  
Sbjct: 178 QQREYVSIILHSADTLMRLINDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAAH 237

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           K L L   +  ++P  ++GD  R+RQI+TNL+ NAIKFT +G+V
Sbjct: 238 KGLELAYHVPVEIPDALVGDPTRLRQIITNLVGNAIKFTEKGEV 281



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 81/153 (52%), Gaps = 24/153 (15%)

Query: 852  PETKPKPKP--KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909
            P T+P   P   +LL ED  +N  V  +++ + GH ++VV NG EAV AVQ  ++D++LM
Sbjct: 526  PFTRPGEIPIRHVLLAEDGVVNQQVTVALLTKRGHPVEVVENGEEAVEAVQRGDFDVVLM 585

Query: 910  DVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALS 969
            DV MPVMDGL A R+IR  E                       N    IPIIA+TA+A  
Sbjct: 586  DVHMPVMDGLAAARMIRERE----------------------RNTGGHIPIIALTASATK 623

Query: 970  ESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
               E C A GMD +V+KP    +L   +EQ  P
Sbjct: 624  ADRERCMAAGMDDYVTKPFRAAELYRAVEQSVP 656



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 48/80 (60%)

Query: 582 MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
           + E  +  V +  +V DTGIGI +N    +F  + Q  A   R+YGGTGLGL I  QL E
Sbjct: 287 LKETTDTDVQLEFEVRDTGIGISKNQQEKVFTAFGQADASTTRRYGGTGLGLTIAAQLAE 346

Query: 642 LMGGRLTVTSKVHCGSTFTF 661
            MGG++ + S+   GSTF+F
Sbjct: 347 KMGGKIKLESEPGVGSTFSF 366



 Score = 43.1 bits (100), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYD-----LILMDVCMPVM 916
           +LLV+DN+ N  + + ++   G    + +NG EA+ A+     +     L L+DV MP M
Sbjct: 392 VLLVDDNETNRRITQEILVNWGMVPTLASNGAEALAALDRAIAEGVPPRLALLDVFMPEM 451

Query: 917 DGLKATRLIRS 927
           DG +  R IR+
Sbjct: 452 DGFELARRIRT 462


>gi|256829959|ref|YP_003158687.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579135|gb|ACU90271.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 705

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I  +K  E EL    +  E   +AK   LA MSHEIR+PL G++ M ++L  T    EQ
Sbjct: 308 DITPRKQMEVELVAAKNAAESANKAKSAFLANMSHEIRTPLNGLLGMMQLLETTDTSDEQ 367

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKI 463
           +  + + I SG  + +L++DILDLS++E+G M L    F   E    V  +    S+QK 
Sbjct: 368 QMYIEMAIRSGGRLTRLLSDILDLSRIEAGRMPLSEEPFNLSETFSAVTDSFGPVSIQKR 427

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL-YVVPEPPFAKEGL 522
           L +  D+A DVP EV GD +R+RQ+L NL+ NA+KFT +G+V I++  ++P PP     L
Sbjct: 428 LPVRIDVAPDVPKEVFGDEVRVRQVLFNLVGNAMKFTDQGEVRIEVSTLLPLPPDTVRVL 487

Query: 523 KQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEG 562
              +      +D   +    P +Q +    GF  +  G G
Sbjct: 488 FCVTDTGAGMSDTTLKTLGNPFTQAS---EGFTREHQGAG 524



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 23/141 (16%)

Query: 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
           P  +ILLVED++I+ +    ++K++GH++    NG+EA+ +++   +D +LMDV M VMD
Sbjct: 578 PSLRILLVEDDEISRVAETQLLKKMGHTVQTAGNGIEALESMRRSTFDCVLMDVQMEVMD 637

Query: 918 GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK-RIPIIAMTANALSESAEECF 976
           GL+AT+ IR+                        S  F  +IPI+AMTA A+    E   
Sbjct: 638 GLEATKNIRT----------------------DVSKFFDPKIPIVAMTAYAMRGDRERFI 675

Query: 977 ANGMDSFVSKPVTFQKLKECL 997
             GMD +++KP    KL++ L
Sbjct: 676 MAGMDDYIAKPFDRNKLEQVL 696



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 45/78 (57%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           TV +   V DTG G+ +  L TL   + Q S    R++ G GLGL+ICK+LV  MGG LT
Sbjct: 483 TVRVLFCVTDTGAGMSDTTLKTLGNPFTQASEGFTREHQGAGLGLSICKRLVAAMGGTLT 542

Query: 649 VTSKVHCGSTFTFILPYQ 666
             S +  G+    +LP++
Sbjct: 543 FESTLGAGTAAYLMLPFR 560


>gi|390601860|gb|EIN11253.1| hypothetical protein PUNSTDRAFT_82821 [Punctularia strigosozonata
           HHB-11173 SS5]
          Length = 1078

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/190 (39%), Positives = 114/190 (60%), Gaps = 13/190 (6%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEI 381
           GV    MD+T Q    ++  K+ EE A +K +   L+      E +    + LA MSHEI
Sbjct: 398 GVVGASMDITAQ----KEAEKMMEESAREKMRA--LSAETAAKEASRLKSEFLANMSHEI 451

Query: 382 RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
           R+P+ GV+ M+E+L +T L +EQR+    +  S D +LQ+INDILD SKVE G + +E A
Sbjct: 452 RTPIAGVIGMSELLCSTPLTQEQREYAENIQRSADALLQVINDILDFSKVEIGKLDIENA 511

Query: 442 KFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIE----VIGDVLRIRQILTNLISNAI 497
            FR   V++  ++    + +K  +  G   +DV +E    V+GD  R+RQ++TNL++NAI
Sbjct: 512 PFRLDMVIEDTVKMLGFATRKKGLTFG---EDVKLEHAEWVMGDAGRVRQVITNLLTNAI 568

Query: 498 KFTPEGKVGI 507
           KFT EG +G+
Sbjct: 569 KFTSEGSIGL 578



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 24/148 (16%)

Query: 855  KPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMP 914
            +P+    +L+ EDN +N  +A  M++++G +    NNG EA+  +  ++YDL+LMD  MP
Sbjct: 723  RPRSSVWVLVAEDNLMNQKIALQMLQKMGFNALAANNGQEALTELTRKSYDLVLMDCQMP 782

Query: 915  VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE 974
             MDG +AT  +RS   T                          IP+IAMTA+A+    E+
Sbjct: 783  EMDGYEATTRLRSMPQT------------------------MHIPVIAMTASAIRGDREK 818

Query: 975  CFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            C   GM  ++SKPV  + L+E + ++ P
Sbjct: 819  CLDKGMSDYLSKPVKSRVLEEMILKWLP 846



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 45/69 (65%)

Query: 598 DTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGS 657
           DTG GIP   L  LFR + Q     AR++GGTGLGL I K LVELMGGR+ + S+   GS
Sbjct: 598 DTGCGIPAAHLGRLFRPFSQGDTSTARRFGGTGLGLTISKNLVELMGGRIGLESEEGVGS 657

Query: 658 TFTFILPYQ 666
           T  F +P++
Sbjct: 658 TAWFSIPFK 666


>gi|333908518|ref|YP_004482104.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas posidonica
           IVIA-Po-181]
 gi|333478524|gb|AEF55185.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas posidonica
           IVIA-Po-181]
          Length = 779

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 173/386 (44%), Gaps = 93/386 (24%)

Query: 302 GSKTFL--IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMA-----KLRE-EIAVQ--- 350
           GSK +   ++V P++   G+ I V  +  D+T +++  EK+A     KL E  +A++   
Sbjct: 105 GSKIYFDTLFV-PIYDALGDPIFVCGVSRDIT-KIKDAEKVALQANEKLTEYSLALESVN 162

Query: 351 -------KAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDR 402
                  + +  E  +   I EE + AK   +A MSHEIR+P+  V+ ++ +   T L+ 
Sbjct: 163 HDLDRKVRERTAEFERAKLIAEEALEAKSSFVARMSHEIRTPINAVIGLSYLCLKTPLNE 222

Query: 403 EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ- 461
           EQ   +  ++S+G+ +L ++ND+LD SK E+G M LE + F    +++H +       + 
Sbjct: 223 EQTDSVSKILSAGESLLSIVNDVLDFSKAEAGKMTLEESPFHIASLLEHAINLNVVQAEA 282

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEG 521
           K + L  D++  +P  ++GD L+I+Q+L NLI+NA+KFT  G + ++L   P        
Sbjct: 283 KQISLRSDVSPYIPSSLLGDPLKIQQLLVNLITNAVKFTERGGITVRLSSSP-------- 334

Query: 522 LKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNS 581
                         + E++     +      G   K     +Q  +  DD  T V  G  
Sbjct: 335 --------------ISEQEILLTGEVIDTGIGISIKDQARLFQSFQQADDSDTRVFGG-- 378

Query: 582 MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
                            TG+G                              LAIC+Q+ +
Sbjct: 379 -----------------TGLG------------------------------LAICQQICQ 391

Query: 642 LMGGRLTVTSKVHCGSTFTFILPYQV 667
           LM G + V S +  G+TF F +P ++
Sbjct: 392 LMNGSIKVESDLGKGATFRFNIPLKI 417



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 32/179 (17%)

Query: 821 TSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMM 879
           T + N P KI   QE  ++     S SSA+V    P  +  KILLVEDN IN  V    +
Sbjct: 408 TFRFNIPLKI--YQETSEK-----SKSSAKVNVAIPNCQACKILLVEDNLINQKVMLGYL 460

Query: 880 KQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939
            +    + + NNG EA+  V  +++DLI MD+ MPVMDGL AT+ +R+ + +        
Sbjct: 461 NETNARVIIANNGQEALDKVLNEDFDLIFMDIQMPVMDGLTATQKLRALDVS-------- 512

Query: 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
                           K IPI AMTA+   ++  +    GM+  + KP+   +L + L+
Sbjct: 513 ----------------KNIPIFAMTAHVSDDAKRKSAQAGMNGHLDKPIDKSELYKILQ 555


>gi|89052756|ref|YP_508207.1| histidine kinase [Jannaschia sp. CCS1]
 gi|88862305|gb|ABD53182.1| histidine kinase [Jannaschia sp. CCS1]
          Length = 716

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/165 (45%), Positives = 103/165 (62%), Gaps = 6/165 (3%)

Query: 353 KETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVM 411
           +E EL++     E   RAK   LA MSHEIR+P+ GVVSMAE+L +T LD EQ+     +
Sbjct: 201 RERELSEARDAAEAANRAKSHFLANMSHEIRTPMNGVVSMAELLRDTALDEEQQMYADTI 260

Query: 412 ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEG 468
            SSG+ +L +INDILD SK+E+G ++L    F    +V  +   +Q   AS    L L+ 
Sbjct: 261 RSSGEALLVIINDILDFSKIEAGKLELHEETFDLNAMVGEIFRLIQPGIASKDLELRLDY 320

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
           DI   +P  +IGD  R+RQILTNLI NA+KFT +G V +++  VP
Sbjct: 321 DIF--LPPLLIGDRGRMRQILTNLIGNAVKFTEKGHVTVRVLSVP 363



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 21/142 (14%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L  EDNK N MV K+M+K L  ++++ NNG+E V A + +  DL++ D+ MP MDGL+
Sbjct: 593  RLLAAEDNKTNQMVFKAMLKGLRLNLEITNNGLELVEAYKREVPDLVMTDISMPEMDGLE 652

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            A   IR++E+            EQ +P         R+ IIAMTA+A+    E   A G+
Sbjct: 653  AAAKIRAYEE------------EQGLP---------RVTIIAMTAHAVEGDRERILAAGL 691

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D +V+KP+    + E +    P
Sbjct: 692  DDYVTKPLKKALIHEKIADGLP 713



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 49/78 (62%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V D+G+GI  +    +F ++ QV  +  R++ GTGLGLAI K+L+ LMGG++ + S
Sbjct: 373 ISIVVEDSGVGIAPDQQEHVFGEFNQVEDEANRRHDGTGLGLAITKRLISLMGGKMWLES 432

Query: 652 KVHCGSTFTFILPYQVSP 669
           +V  GS F F +  +V P
Sbjct: 433 EVGRGSAFGFTISMKVDP 450


>gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1349

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 110/181 (60%), Gaps = 3/181 (1%)

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
           Q R +E      ++I  +K  E  L +   +     +AK + LA MSHEIR+P+ G++ M
Sbjct: 663 QYRDKEVTVLAIQDITYKKRSEEAL-RYAAVERAANKAKGEFLANMSHEIRTPMNGIIGM 721

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
           A +L +T L+ EQ+ LL  + SS + +L++INDILD SK+E+G + LE  +F PR  V+ 
Sbjct: 722 ASLLEDTPLNNEQKDLLQTISSSAESLLRIINDILDYSKIEAGKLDLERIEFDPRSTVED 781

Query: 452 VLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
           V    A +  QK L +   I+  VP +V+GD  R+RQ+L NL  NAIKFT +G+V ++  
Sbjct: 782 VTALMAKTAEQKGLQITSLISHKVPSKVVGDPGRLRQVLMNLTGNAIKFTSKGEVIVRAL 841

Query: 511 V 511
           V
Sbjct: 842 V 842



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 21/141 (14%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            K ++LLVED  +N  VA  +++ +GH + V +NG E + A +   +D++ MDV MPVMDG
Sbjct: 1091 KLRVLLVEDQMVNQKVAVKIIQNMGHGVVVADNGQEGLEAFKNGAFDIVFMDVQMPVMDG 1150

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            L AT  IR  E                     S  +  RIPIIA TA+A+    E   + 
Sbjct: 1151 LAATAAIRKLE---------------------SEENRARIPIIAFTAHAMEGDKERFLSA 1189

Query: 979  GMDSFVSKPVTFQKLKECLEQ 999
            GMD +++KPV    L   +E+
Sbjct: 1190 GMDDYLTKPVKKDALTRVMEK 1210



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 49/80 (61%)

Query: 582 MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
           +DE+      +R ++ DTGIG+P++ L +L+  + Q      R+YGGTGLGL I KQL  
Sbjct: 842 VDEEDRGGATLRFEIIDTGIGVPQSRLSSLYESFTQADPSTTRRYGGTGLGLTISKQLCR 901

Query: 642 LMGGRLTVTSKVHCGSTFTF 661
           LMGG++   SK   GS F F
Sbjct: 902 LMGGKIGAESKEGEGSLFWF 921



 Score = 39.7 bits (91), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 857 KPKPKILLVEDNKINVMVAKSMMKQL---GHSIDVVNNGVEAVHAVQCQNYDLILMDVCM 913
           +P  KIL+V+D    +++ KS+   L   G+ +    NG +A+  V     D IL+D+ M
Sbjct: 3   RPPGKILVVDDE---LVIRKSLRLALEDEGYEVQEAENGQDALVMVSKNPPDCILLDLRM 59

Query: 914 PVMDGL 919
           PVMDGL
Sbjct: 60  PVMDGL 65


>gi|417771385|ref|ZP_12419280.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Pomona str. Pomona]
 gi|418683285|ref|ZP_13244490.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Pomona str. Kennewicki LC82-25]
 gi|418692075|ref|ZP_13253156.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
           FPW2026]
 gi|418704695|ref|ZP_13265563.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Hebdomadis str. R499]
 gi|418728841|ref|ZP_13287410.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
           12758]
 gi|421116595|ref|ZP_15576976.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Canicola str. Fiocruz LV133]
 gi|400324858|gb|EJO77142.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Pomona str. Kennewicki LC82-25]
 gi|400358138|gb|EJP14254.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
           FPW2026]
 gi|409946582|gb|EKN96591.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Pomona str. Pomona]
 gi|410011838|gb|EKO69948.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Canicola str. Fiocruz LV133]
 gi|410765643|gb|EKR36342.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Hebdomadis str. R499]
 gi|410776244|gb|EKR56223.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
           12758]
 gi|455667064|gb|EMF32425.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Pomona str. Fox 32256]
          Length = 804

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 156/332 (46%), Gaps = 73/332 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 386 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG 445

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV        
Sbjct: 446 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF------- 492

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK+ I+ YV  +P
Sbjct: 493 --SIRSVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP 532

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N                       
Sbjct: 533 ------LRLRQILWNLAGNGIKFTSRGEVVLKVTQKN----------------------- 563

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +S         +++V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 564 IS---------KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 614

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            KQLVEL GG L + SK   GS FTF + Y +
Sbjct: 615 TKQLVELQGGVLKLESKDGEGSKFTFTIDYDI 646



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 677  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 736

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 737  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 772

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 773  MNDCLTKPLDLPILKSTLDLW 793


>gi|408671578|ref|YP_006870462.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
           17448]
 gi|387857475|gb|AFK05571.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
           17448]
          Length = 1208

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 108/176 (61%), Gaps = 10/176 (5%)

Query: 345 EEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
           E+  ++K  E +L    ++ E+ + AK   LA MSHEIR+PL  ++   E++S + LD  
Sbjct: 679 EDYTIKKQAELDLINAKNLAEQAVYAKDSFLANMSHEIRTPLNAIIGFTELISQSNLDST 738

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV-----LQTAAA 458
           QR+ +  +  +GD +L +INDILDLSK+ESG + +E+  F  +  +KH+     ++TA  
Sbjct: 739 QREFISNIQMAGDNLLHIINDILDLSKIESGQLVIESYPFNIKATLKHIYELLKVKTAKN 798

Query: 459 SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
           +L   L+L+ D+    P  V+GD  R+ QI+ NL+ NA+KFT EG+V I +  V E
Sbjct: 799 NLDFSLLLDADM----PEFVVGDKGRLNQIMMNLVGNAVKFTKEGEVTISVKKVDE 850



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 27/140 (19%)

Query: 855  KPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMP 914
            K   K  ILL EDN++N  +AK+++++ G  +D+  NG E +  +   +YDLILMD+ MP
Sbjct: 949  KSSRKLSILLCEDNELNQRLAKTIIQKFGFDLDIAVNGEEGLKLLSKNHYDLILMDLQMP 1008

Query: 915  VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK-RIPIIAMTANALSESAE 973
            V DG + T  IR                          N  K  IPIIAMTA++L    +
Sbjct: 1009 VKDGYQTTIHIR--------------------------NVLKLEIPIIAMTAHSLVGEQQ 1042

Query: 974  ECFANGMDSFVSKPVTFQKL 993
            +CF  GM+++V+KP   Q+L
Sbjct: 1043 KCFEIGMNAYVAKPFKQQEL 1062



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 7/99 (7%)

Query: 584 EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
           ++ ++ V ++  V DTGIGIP + L  +F ++ Q  A   R +GGTGLGL I KQLVEL 
Sbjct: 849 DETDSHVTLKFSVKDTGIGIPADKLSLIFERFTQAEASTTRTFGGTGLGLNIVKQLVELQ 908

Query: 644 GGRLTVTSKVHCGSTFTF--ILP-----YQVSPIEENSD 675
            G++ V S +  GS F F  I P     Y+ + IE +S+
Sbjct: 909 NGQIQVKSTLGQGSDFYFSLIFPKVESSYKDASIENDSN 947


>gi|429211850|ref|ZP_19203015.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. M1]
 gi|428156332|gb|EKX02880.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. M1]
          Length = 787

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 143/286 (50%), Gaps = 23/286 (8%)

Query: 226 FVLQNA-PVVMGHQDKELRYRFIYNHFP---SLHEEDILGKTDVEIFSGAGVKESQDFKR 281
             L NA P  +  +D E RY    + F     L  ED++G++D ++FS A      +  R
Sbjct: 317 LALINAIPDPIWFKDTEGRYLGANHAFAECLGLPAEDVIGRSDAQLFSDAASAGRGERDR 376

Query: 282 EVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMA 341
           + L    P           F S+ +++Y +      G  +  + +     D       + 
Sbjct: 377 QALSASQP-----------FASEGWVVYPD------GRRVLFDTLRSAFHDDHGALLGLV 419

Query: 342 KLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKL 400
            +  +I  +KA E  L +   + E+  R K + LA +SHEIR+PL  ++ +A +L  T L
Sbjct: 420 GVSRDITARKATEEALAQARDLAEQAARLKSEFLANVSHEIRTPLNIIIGLAHLLEQTAL 479

Query: 401 DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-S 459
           D +QR  LG +  SG  +L+LI+DILDLSKVE+G ++ E   F    ++  ++   A  +
Sbjct: 480 DPQQRDYLGKIQGSGQYLLELISDILDLSKVEAGRLEFEHLDFDLERLLGELVDLLAIRA 539

Query: 460 LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
             K L LE  I   +P  ++GD LR+RQIL N  +NA+KFT  G +
Sbjct: 540 AGKGLSLECHIDPRLPSHLLGDSLRLRQILMNYGNNALKFTEHGSL 585



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 5/82 (6%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           DED     W+   + DTGIGI       LF  + Q      R+YGG+GLGLAICK+L E 
Sbjct: 597 DED-----WLYFGLRDTGIGISPAQQERLFESFRQADNSITRRYGGSGLGLAICKRLAEA 651

Query: 643 MGGRLTVTSKVHCGSTFTFILP 664
           MGG + V S+   GS F   LP
Sbjct: 652 MGGEVGVDSEPDKGSLFWCRLP 673


>gi|428315640|ref|YP_007113522.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
           PCC 7112]
 gi|428239320|gb|AFZ05106.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis
           PCC 7112]
          Length = 1532

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/183 (42%), Positives = 105/183 (57%), Gaps = 19/183 (10%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           ++ + KA++  L  T        RAK + LATMSHEIR+P+ GV+ M  +L +T L REQ
Sbjct: 670 DVDLAKARDQALAAT--------RAKSEFLATMSHEIRTPMNGVIGMTGLLLDTPLTREQ 721

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKIL 464
           R  +  + SSGD +L LINDILD SK+ESG + LE   F  R  ++  L   AA   +  
Sbjct: 722 RDFVETIRSSGDALLTLINDILDFSKIESGKLDLEEHPFDIRTCIEESLDLVAAKAAEKK 781

Query: 465 MLEGDIAD-DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV----VP-----E 514
           +  G + D  VP   IGD  R+RQIL NL+SNA+KFT  G+V + +      VP     E
Sbjct: 782 LEVGYLIDRTVPATAIGDSTRLRQILINLLSNAVKFTDAGEVVVSVTAKKISVPAANSKE 841

Query: 515 PPF 517
           PP 
Sbjct: 842 PPL 844



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I+  V DTGIGIP + +  LF+ + QV +  +R+YGGTGLGLAI K+L E+MGGR+ V S
Sbjct: 858 IQFAVKDTGIGIPSDRMDRLFKSFSQVDSSTSRQYGGTGLGLAISKRLAEMMGGRMWVES 917



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 48/66 (72%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL +D+ +N  VA  +++++G+  DV  NG+E + A++ Q YD++LMDV MP MDGL+
Sbjct: 1146 RILLADDHLVNQKVALQILQRMGYRADVAGNGIEVLEALRRQPYDVVLMDVQMPEMDGLE 1205

Query: 921  ATRLIR 926
             TR IR
Sbjct: 1206 TTRRIR 1211



 Score = 46.2 bits (108), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
            I+AMTANA+    EEC A GMD ++SKP+  ++L   L
Sbjct: 1303 IVAMTANAMQGDREECMAAGMDDYLSKPIAIEQLVRAL 1340


>gi|417786027|ref|ZP_12433724.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
           C10069]
 gi|418702445|ref|ZP_13263353.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Bataviae str. L1111]
 gi|421083555|ref|ZP_15544429.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
           HAI1594]
 gi|421101425|ref|ZP_15562037.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Icterohaemorrhagiae str. Verdun LP]
 gi|409950856|gb|EKO05378.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
           C10069]
 gi|410368597|gb|EKP23973.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Icterohaemorrhagiae str. Verdun LP]
 gi|410433916|gb|EKP78253.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
           HAI1594]
 gi|410758614|gb|EKR24843.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Bataviae str. L1111]
          Length = 804

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 156/332 (46%), Gaps = 73/332 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 386 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG 445

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV        
Sbjct: 446 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF------- 492

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK+ I+ YV  +P
Sbjct: 493 --SIRSVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP 532

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N                       
Sbjct: 533 ------LRLRQILWNLAGNGIKFTSRGEVVLKVTQKN----------------------- 563

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +S         +++V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 564 IS---------KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 614

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            KQLVEL GG L + SK   GS FTF + Y +
Sbjct: 615 TKQLVELQGGVLKLESKDGEGSKFTFTIDYDI 646



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 677  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 736

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 737  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 772

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 773  MNDCLTKPLDLPILKSTLDLW 793


>gi|386815517|ref|ZP_10102735.1| histidine kinase [Thiothrix nivea DSM 5205]
 gi|386420093|gb|EIJ33928.1| histidine kinase [Thiothrix nivea DSM 5205]
          Length = 448

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 98/144 (68%), Gaps = 2/144 (1%)

Query: 369 RAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           RAK   LA MSHEIR+P+ G++ MA +L +T+LD  Q+  +  ++ S   +L ++NDILD
Sbjct: 70  RAKSSFLAAMSHEIRTPMNGIIGMATLLQDTRLDAGQQHQVATILQSAQALLGILNDILD 129

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           +S++E+G ++L +  FR  +++  +L+T  A + QK L L  DI    P  + GD LRIR
Sbjct: 130 ISRLEAGKLELLSETFRLYDILPGMLETMQAIARQKQLELLKDIHAQTPDIMCGDSLRIR 189

Query: 487 QILTNLISNAIKFTPEGKVGIKLY 510
           QILTNLI NAIKFTP+G + ++++
Sbjct: 190 QILTNLIGNAIKFTPQGTITLRIH 213



 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 52/208 (25%)

Query: 795  VETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPET 854
            V +T WF+ P   S                  P +I   Q   +++   P+S++ +   T
Sbjct: 285  VGSTFWFEIPLAAS------------------PTQIAVKQAGHEKL---PASATMQYANT 323

Query: 855  KPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ-NYDLILMDVCM 913
                   +L+VED+K+N +VAK M+ +LG+ + +   G +AV  ++ Q ++DL+LMD+ M
Sbjct: 324  GHH----VLVVEDHKVNQLVAKGMLTKLGYKVTLAETGFQAVELLRSQDDFDLVLMDIQM 379

Query: 914  PVMDGLKATRLIRS-FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            P M+G++ATR+IR+ F D                         + +PI+A+TANA+    
Sbjct: 380  PGMNGVEATRIIRNEFPD-------------------------RPLPILALTANAMKGDE 414

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQY 1000
            +E  A GMD+ ++KP+   +L   L ++
Sbjct: 415  QEYLAAGMDACLTKPIQIVQLAAALREW 442



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 47/80 (58%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           IR +V DTGIGIP      LFR + Q+S        GTGLGLAIC++LV LM G + + S
Sbjct: 222 IRFEVQDTGIGIPLEKQADLFRAFSQISRYDQHNSSGTGLGLAICRRLVNLMDGTIGLVS 281

Query: 652 KVHCGSTFTFILPYQVSPIE 671
               GSTF F +P   SP +
Sbjct: 282 TPGVGSTFWFEIPLAASPTQ 301


>gi|329930043|ref|ZP_08283668.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328935442|gb|EGG31914.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 642

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 96/150 (64%), Gaps = 2/150 (1%)

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           E+T +AK + LA MSHEIR+P+ GV+ M +++  T+LD EQ++ + ++  SG  +L +IN
Sbjct: 259 EKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETELDEEQQEYVQIIKKSGTTLLNIIN 318

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDV 482
           DILD SK+ESG  +L    F  R  +   L      +L K + +   +A DVP +V GDV
Sbjct: 319 DILDFSKIESGRTELVEETFSLRTALSETLNMILPKALDKNIEVTTSVASDVPNQVYGDV 378

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            ++RQ+L NL+SNAIKFTP G V I +  V
Sbjct: 379 TKLRQVLMNLLSNAIKFTPNGAVSISVQCV 408



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 79/141 (56%), Gaps = 23/141 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KIL+ EDN++N +V K M+++LG++   V NG+EAV A +   YD++ MD+ MP MDG++
Sbjct: 517  KILIAEDNEVNQLVLKKMIEKLGYNSTTVLNGLEAVEAFKRYPYDMVFMDIQMPFMDGME 576

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            A +LI+                E A P         +  I+A+TA+A+    E+    GM
Sbjct: 577  AVQLIK----------------ESAPPD-------HQPYIVAVTAHAIKGDREKYLGMGM 613

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            D +VSKPV+   +   ++Q+ 
Sbjct: 614  DEYVSKPVSLNVISAIIDQFL 634



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 11/108 (10%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I+  V DTGIG+P   +  LF  + QV     R+  GTGLGLAICK+LV+LMGG +    
Sbjct: 417 IQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMGGDIWYER 476

Query: 652 KVH-CGSTFTFILPYQVSP----------IEENSDDPDDLSDMADQDS 688
             +  GS FTF + +  S           + EN  D  DL  +  +D+
Sbjct: 477 NPNQQGSVFTFTVDFSFSANAGNMPEAGTVHENHSDGSDLKILIAEDN 524


>gi|294828438|ref|NP_714175.2| histidine kinase/response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|386075620|ref|YP_005989940.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. IPAV]
 gi|293386292|gb|AAN51193.2| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|353459412|gb|AER03957.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. IPAV]
          Length = 804

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 156/332 (46%), Gaps = 73/332 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 386 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG 445

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV        
Sbjct: 446 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF------- 492

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK+ I+ YV  +P
Sbjct: 493 --SIRSVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP 532

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N                       
Sbjct: 533 ------LRLRQILWNLAGNGIKFTSRGEVVLKVTQKN----------------------- 563

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +S         +++V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 564 IS---------KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 614

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            KQLVEL GG L + SK   GS FTF + Y +
Sbjct: 615 TKQLVELQGGVLKLESKDGEGSKFTFTIDYDI 646



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 677  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 736

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 737  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 772

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 773  MNDCLTKPLDLPILKSTLDLW 793


>gi|418710621|ref|ZP_13271390.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Grippotyphosa str. UI 08368]
 gi|410769062|gb|EKR44306.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Grippotyphosa str. UI 08368]
          Length = 804

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 156/332 (46%), Gaps = 73/332 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 386 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG 445

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV        
Sbjct: 446 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF------- 492

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK+ I+ YV  +P
Sbjct: 493 --SIRSVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP 532

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N                       
Sbjct: 533 ------LRLRQILWNLAGNGIKFTSRGEVVLKVTQKN----------------------- 563

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +S         +++V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 564 IS---------KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 614

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            KQLVEL GG L + SK   GS FTF + Y +
Sbjct: 615 TKQLVELQGGVLKLESKDGEGSKFTFTIDYDI 646



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 677  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 736

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 737  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 772

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 773  MNDCLTKPLDLPILKSTLDLW 793


>gi|418715572|ref|ZP_13275693.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
           08452]
 gi|410788473|gb|EKR82191.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
           08452]
          Length = 804

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 154/327 (47%), Gaps = 73/327 (22%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L  TKL+
Sbjct: 391 LKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLGTTKLN 450

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV          S++
Sbjct: 451 DEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF---------SIR 495

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEPPFAKE 520
            +L       D+           I  +L  L     I F  EGK+ I+ YV  +P     
Sbjct: 496 SVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP----- 532

Query: 521 GLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGN 580
            L+ +   +  A + +K           + +N                       +S   
Sbjct: 533 -LRLRQILWNLAGNGIKFTSRGEVVLKVTQKN-----------------------IS--- 565

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
                 +++V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I KQLV
Sbjct: 566 ------KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLV 619

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQV 667
           EL GG L + SK   GS FTF + Y +
Sbjct: 620 ELQGGVLKLESKDGEGSKFTFTIDYDI 646



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 677  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 736

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 737  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 772

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 773  MNDCLTKPLDLPILKSTLDLW 793


>gi|421121811|ref|ZP_15582101.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
           Brem 329]
 gi|410345148|gb|EKO96267.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
           Brem 329]
          Length = 804

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 156/332 (46%), Gaps = 73/332 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 386 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG 445

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV        
Sbjct: 446 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF------- 492

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK+ I+ YV  +P
Sbjct: 493 --SIRSVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP 532

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N                       
Sbjct: 533 ------LRLRQILWNLAGNGIKFTSRGEVVLKVTQKN----------------------- 563

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +S         +++V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 564 IS---------KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 614

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            KQLVEL GG L + SK   GS FTF + Y +
Sbjct: 615 TKQLVELQGGVLKLESKDGEGSKFTFTIDYDI 646



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 677  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 736

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 737  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 772

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 773  MNDCLTKPLDLPILKSTLDLW 793


>gi|417767725|ref|ZP_12415661.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Bulgarica str. Mallika]
 gi|400349743|gb|EJP02031.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Bulgarica str. Mallika]
          Length = 804

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 156/332 (46%), Gaps = 73/332 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 386 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG 445

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV        
Sbjct: 446 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF------- 492

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK+ I+ YV  +P
Sbjct: 493 --SIRSVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP 532

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N                       
Sbjct: 533 ------LRLRQILWNLAGNGIKFTSRGEVVLKVTQKN----------------------- 563

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +S         +++V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 564 IS---------KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 614

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            KQLVEL GG L + SK   GS FTF + Y +
Sbjct: 615 TKQLVELQGGVLKLESKDGEGSKFTFTIDYDI 646



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 677  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 736

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 737  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 772

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 773  MNDCLTKPLDLPILKSTLDLW 793


>gi|417759883|ref|ZP_12407914.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
           2002000624]
 gi|417777408|ref|ZP_12425227.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
           2002000621]
 gi|418674812|ref|ZP_13236110.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
           2002000623]
 gi|409944278|gb|EKN89864.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
           2002000624]
 gi|410572783|gb|EKQ35846.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
           2002000621]
 gi|410578249|gb|EKQ46112.1| 7TM diverse intracellular signaling [Leptospira interrogans str.
           2002000623]
          Length = 804

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 156/332 (46%), Gaps = 73/332 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 386 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG 445

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV        
Sbjct: 446 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF------- 492

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK+ I+ YV  +P
Sbjct: 493 --SIRSVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP 532

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N                       
Sbjct: 533 ------LRLRQILWNLAGNGIKFTSRGEVVLKVTQKN----------------------- 563

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +S         +++V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 564 IS---------KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 614

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            KQLVEL GG L + SK   GS FTF + Y +
Sbjct: 615 TKQLVELQGGVLKLESKDGEGSKFTFTIDYDI 646



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 677  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 736

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 737  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 772

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 773  MNDCLTKPLDLPILKSTLDLW 793


>gi|427421152|ref|ZP_18911335.1| PAS domain S-box [Leptolyngbya sp. PCC 7375]
 gi|425757029|gb|EKU97883.1| PAS domain S-box [Leptolyngbya sp. PCC 7375]
          Length = 1053

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 102/168 (60%), Gaps = 1/168 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LATMSHEIR+P+  V+ M  +L +T L  EQR  +  + +SG+ +L LINDILD SK+
Sbjct: 366 EFLATMSHEIRTPMNAVIGMTSLLLDTALTDEQRNFVTTVRNSGNALLTLINDILDFSKI 425

Query: 432 ESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LEA  F  R  ++      AA + +K L L  +I   +P   +GDV R+RQ+L 
Sbjct: 426 ESGHLELEAHPFDLRACIEEAFDLIAAKASEKQLELAFNIDSAIPNTFVGDVTRLRQVLV 485

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKE 538
           NL+ N++KFT  G++ I +        A+ G K  ++ +QS   AVK+
Sbjct: 486 NLLGNSVKFTHRGEISISVTNWKSSSPAEPGSKSLAETHQSLCFAVKD 533



 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 23/139 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +ILL EDN +N  +A  ++K++G+  D+V NG+EA++A++ Q+YD+ILMD+ MP MDGL 
Sbjct: 767 QILLAEDNGVNQQLATQLLKKMGYRADLVGNGLEAINALERQSYDVILMDLQMPDMDGLT 826

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           AT+ I        W AA                   R  IIA+TANA+    E C   GM
Sbjct: 827 ATQKI-----CEQWSAA------------------NRPWIIAVTANAMQGDREACLKAGM 863

Query: 981 DSFVSKPVTFQKLKECLEQ 999
           D ++SKP+  ++L   L++
Sbjct: 864 DDYISKPIRIEELVAALQR 882



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 1/79 (1%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP   +  LF+ + QV +   RKYGGTGLGLAICKQL E+MGG++ V S+V  
Sbjct: 531 VKDTGIGIPTQRIARLFKAFSQVDSSTTRKYGGTGLGLAICKQLTEMMGGKIWVESQVDQ 590

Query: 656 GSTFTFILPYQVSPIEENS 674
           GSTF F +  Q + +E++S
Sbjct: 591 GSTFFFTITLQTT-VEKSS 608


>gi|302036587|ref|YP_003796909.1| histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604651|emb|CBK40983.1| Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 589

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 16/191 (8%)

Query: 336 KREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-----------QMLATMSHEIRSP 384
           +RE+ A+LR E A+Q+  + EL + +   EE  RAK           + LA+MSHEIR+P
Sbjct: 31  QREQAARLRAERALQRVSK-ELQRRV---EELQRAKDAADVANRAKSEFLASMSHEIRTP 86

Query: 385 LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
           +  ++ MA++L  T L  EQR+ L +   +G  +L LINDILDLSKVESG + L++  F 
Sbjct: 87  MNAIIGMADLLWETTLTPEQRKYLRIFRRAGASLLSLINDILDLSKVESGRLDLDSIDFD 146

Query: 445 PREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
             E++    +  A    +K L L   +A+DVP  +IGD  R+ QIL NL+ NAIKFT +G
Sbjct: 147 LSELIDKTSEMLALRANEKGLELVCHLANDVPCHLIGDPNRLYQILLNLLGNAIKFTEKG 206

Query: 504 KVGIKLYVVPE 514
            V + +   PE
Sbjct: 207 SVVMSITNDPE 217



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 25/161 (15%)

Query: 841  SQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
            S SP  ++ + P   P+ +  +ILLVED+  N ++ +S +K   H +D+ +NG   V   
Sbjct: 447  SPSPQGAALQAP---PQGRSLRILLVEDSPDNQVLIQSYLKNTIHRVDLADNGQIGVAKF 503

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
            Q  +YDLILMD+ MPVMDGL ATR IR +E             EQ +P+         + 
Sbjct: 504  QNGHYDLILMDMQMPVMDGLTATRTIRRWEQ------------EQGLPA---------VQ 542

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            IIA+TA AL E +   F  G ++ ++KP+    L E L  Y
Sbjct: 543  IIALTALALKEESARIFEAGCNAHMTKPLKRTTLLELLLAY 583



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 2/89 (2%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           D +L     IR  + DTGIG+P + + T+F  + Q  +  AR+YGGTGLGL+I +QL  L
Sbjct: 215 DPELRTPGAIRFSISDTGIGVPHDKIKTIFETFTQAHSTIARQYGGTGLGLSISQQLAAL 274

Query: 643 MGGRLTVTSKVHCGSTFTFI--LPYQVSP 669
           MGGR+ V S++  GSTF  +  L  Q +P
Sbjct: 275 MGGRIWVESRLGEGSTFHCLVRLGVQTAP 303


>gi|367035210|ref|XP_003666887.1| hypothetical protein MYCTH_2311998 [Myceliophthora thermophila ATCC
            42464]
 gi|347014160|gb|AEO61642.1| hypothetical protein MYCTH_2311998 [Myceliophthora thermophila ATCC
            42464]
          Length = 2041

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 99/153 (64%), Gaps = 3/153 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + +L +IN
Sbjct: 1359 KEAMDSKGRFLSNMSHEIRTPLIGISGMVSFLQDTTLNEEQRDYTNTIQTSANSLLMIIN 1418

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSKV++G+MKL    F  R +++ V +  +  ++ K L L   + +DVP  V GD 
Sbjct: 1419 DILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAVAKRLELNYVVEEDVPAWVKGDK 1478

Query: 483  LRIRQILTNLISNAIKFTPEGKVGIKLYV-VPE 514
            +RIRQ+L N+I NAIKFTP+G+V  K  V VPE
Sbjct: 1479 VRIRQVLLNVIGNAIKFTPKGEVFSKCRVFVPE 1511



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 24/144 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMPVMD 917
            K+LLVEDN +N  V +  +K++G ++++  +GVE    V  +    Y LIL D+ MP  D
Sbjct: 1919 KVLLVEDNPVNQKVLQKYLKRVGVAVELAADGVECTEMVFSKGWGYYALILCDLHMPRKD 1978

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +A R +R++E        AE G        GS      +PIIA++AN +S   E+C  
Sbjct: 1979 GYQACREVRAWE--------AERG-------HGS------LPIIALSANVMSGVQEKCVN 2017

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             G + +V+KPV F  L   L ++F
Sbjct: 2018 AGFNDYVTKPVDFIDLSRALSKFF 2041



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            + +   + DTG G  +     +F+ + Q+     R++GG+GLGL I +QLVEL GG++  
Sbjct: 1520 IMLEFSIIDTGRGFTQEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMVG 1579

Query: 650  TSKVHCGSTFTF 661
            T+    GSTFTF
Sbjct: 1580 TAVPGEGSTFTF 1591


>gi|344339667|ref|ZP_08770595.1| multi-sensor hybrid histidine kinase [Thiocapsa marina 5811]
 gi|343800403|gb|EGV18349.1| multi-sensor hybrid histidine kinase [Thiocapsa marina 5811]
          Length = 1717

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 108/167 (64%), Gaps = 4/167 (2%)

Query: 347  IAVQKAKETE--LNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
            + VQK +ETE  L  +    E   R+K + LA MSHEIR+P+  V+ +++IL  T L+ E
Sbjct: 1163 VNVQKRRETEDSLRLSREQAEAASRSKSEFLANMSHEIRTPMNAVIGLSQILLGTDLNDE 1222

Query: 404  QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQK 462
            QR  LG +  S  L+L +INDILD SK+E+G + LE+  FR  E++  +     +A+ +K
Sbjct: 1223 QRDYLGKIHGSSRLLLGIINDILDYSKIEAGKLDLESRPFRMDELLDQMATLFGSAAGEK 1282

Query: 463  ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             L L   ++ DVP  ++GD LR+ Q+LTNL++NA+KFT +G V I++
Sbjct: 1283 GLELVFRVSPDVPRTLLGDALRLGQVLTNLLANALKFTEQGTVEIRI 1329



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 58/97 (59%), Gaps = 3/97 (3%)

Query: 588  ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
            A V +R +V DTGIG+    +  LF+ + Q  +   RKYGGTGLGL I ++LVE MGGRL
Sbjct: 1337 AQVKLRFEVADTGIGMDTEQIDRLFQAFSQADSSTTRKYGGTGLGLVISRKLVERMGGRL 1396

Query: 648  TVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMA 684
            TV S    GS F+F L   + P+     +P DL  +A
Sbjct: 1397 TVASAPEAGSVFSFDL---LLPVSREDSEPRDLRKIA 1430



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 30/168 (17%)

Query: 835  EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            EKP     +P++  A +P         ILLVEDN +N  VAK M+++ G  + +  NG+E
Sbjct: 1560 EKPHPGRTAPTAR-APIPSFT---GAAILLVEDNALNQEVAKRMLQRTGAVVTLAENGIE 1615

Query: 895  AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
            AV     Q++DL+LMD+ MP+MDG +ATR IR                            
Sbjct: 1616 AVALATTQDFDLVLMDLQMPMMDGFEATRRIRP--------------------------Q 1649

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
               +PIIA++A  +          GM+  ++KP+   +L   L  + P
Sbjct: 1650 RPDLPIIALSAAVMEIDRNGAREAGMNGHLAKPIDTVELYRTLALWLP 1697


>gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG-6]
 gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6]
          Length = 1149

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 98/153 (64%), Gaps = 2/153 (1%)

Query: 364 TEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
            E   RA+ + LA MSHEIR+P+ GV+ M  +L +T L+  QR+    + SSG+ +L +I
Sbjct: 507 AEHATRARSEFLANMSHEIRTPMNGVIGMTGLLLDTPLNERQREYAETIRSSGESLLTII 566

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGD 481
           NDILDLSK+ESG M+LE   F  +E V+  L   A  +  K L L   IA DVP+ +I D
Sbjct: 567 NDILDLSKIESGRMELEQQPFEIQECVESALDLVAPTAFAKGLDLAYLIAADVPMMLISD 626

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
           V R+RQIL NL+ NA+KFT  G+V +++   P+
Sbjct: 627 VTRLRQILVNLLGNAVKFTEHGEVTLQVSRYPD 659



 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 90/157 (57%), Gaps = 29/157 (18%)

Query: 849  AEVPETKPKPKP------KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
            A+ P+ +P+P P      +ILL EDN +N  VA   +++LG+  DVV NG+EA+ A+  Q
Sbjct: 884  AQEPQVQPEPVPDERHSLRILLAEDNAVNQRVALRTLERLGYRADVVGNGLEAIEAIARQ 943

Query: 903  NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
            +YD++LMDV MP +DGL+ATR I        W A A                  R  IIA
Sbjct: 944  HYDVVLMDVQMPELDGLEATRQI-----VARWPATA------------------RPRIIA 980

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            MTANA+    E C A GMD ++SKPV  ++L+  L+Q
Sbjct: 981  MTANAMRGDRERCLAAGMDDYISKPVRLEELELVLKQ 1017



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 583 DEDLEA-TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
           D DLEA  V +  +V DTGIGIP + L  LFR + QV A   R YGGTGLGL ICK+L E
Sbjct: 659 DFDLEADQVHLVIEVRDTGIGIPPDKLDRLFRAFSQVDASTTRTYGGTGLGLVICKRLSE 718

Query: 642 LMGGRLTVTSKVHCGSTF 659
           ++GG ++V S    GSTF
Sbjct: 719 MLGGGISVESAPGQGSTF 736


>gi|284988897|ref|YP_003407451.1| multi-sensor hybrid histidine kinase [Geodermatophilus obscurus DSM
           43160]
 gi|284062142|gb|ADB73080.1| multi-sensor hybrid histidine kinase [Geodermatophilus obscurus DSM
           43160]
          Length = 957

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 110/195 (56%), Gaps = 27/195 (13%)

Query: 323 VNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ----MLATMS 378
           VN +G    D +++R ++   RE   V    E E            RA Q     LATMS
Sbjct: 277 VNALG----DALQERNELVATRERDLVAARDEAE------------RAGQAKTAFLATMS 320

Query: 379 HEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKL 438
           HEIR+PL  V+ + ++L  T L  EQR  L  +  SGD +L LINDILD SK+E+G + L
Sbjct: 321 HEIRTPLNAVLGLTDVLLATDLTDEQRGHLETVAGSGDSLLSLINDILDFSKIEAGELDL 380

Query: 439 EAAKFRPREVVKHVLQ----TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLIS 494
           EAA F    VV  V Q    TA+ +   +L+   D+A D P +V+GD  R RQ++TNL+ 
Sbjct: 381 EAAPFDLVGVVYDVAQLLAPTASGAGLDLLV---DVAGDGPWQVVGDGSRFRQVVTNLVG 437

Query: 495 NAIKFTPEGKVGIKL 509
           NA+KFT EG V ++L
Sbjct: 438 NAVKFTSEGHVVLRL 452



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 54/97 (55%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E  +  R  V DTGIGI  +    LFR + QV A   R YGGTGLGLAI +++   MGG 
Sbjct: 458 EGRLQCRLSVVDTGIGISPDQRHRLFRSFSQVDASVTRSYGGTGLGLAISQRIARAMGGD 517

Query: 647 LTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDM 683
           + V S++  GSTFT  L   ++P   +    D L+ +
Sbjct: 518 IQVHSELGVGSTFTVALDLPLAPAVPDDPSADGLAGL 554



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 24/144 (16%)

Query: 856 PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
           P    ++L+ EDN +N  +    ++QLGH    V +G +AV AV    YD++LMD  MPV
Sbjct: 691 PARSLRVLVAEDNAVNAQLMSLYLRQLGHRCTHVGDGEQAVDAVLRGTYDVVLMDAQMPV 750

Query: 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
           + G++AT  IR                   +P +          I A+TA+ L+      
Sbjct: 751 LGGVEATAAIR------------------LLPLATQPR------IYAVTASVLAADRTAF 786

Query: 976 FANGMDSFVSKPVTFQKLKECLEQ 999
              G D F++KP+    L++ L++
Sbjct: 787 LEAGADGFLTKPIRMATLRDALDE 810


>gi|281206288|gb|EFA80477.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 878

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/160 (43%), Positives = 102/160 (63%), Gaps = 3/160 (1%)

Query: 351 KAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNT-KLDREQRQLL 408
           K K  +L        E  +A+Q  LATMSHEIR+PL G++ MA +L ++  L  E++Q+ 
Sbjct: 450 KTKNLQLTVAKDAAVEAYQARQEFLATMSHEIRTPLNGLIGMATLLRDSLSLPPEEKQMA 509

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKI-LMLE 467
             + S GD++L+L+NDILDLSK+E+  M +E   FR +++   + Q  AA  ++  L L+
Sbjct: 510 KSVKSCGDILLRLVNDILDLSKLEANQMVVENIGFRVKDMAHEICQVLAAQAKEHNLRLQ 569

Query: 468 GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
            ++AD+VP  + GD  RI Q+L NL  NAIKFTPEG V I
Sbjct: 570 YEVADNVPPVLFGDTGRILQVLMNLTGNAIKFTPEGVVKI 609



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 22/140 (15%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           K+L+ EDN IN  VA   +++LG   DV +NG E +  ++   YDLI MD  MP++DGL+
Sbjct: 730 KVLVAEDNVINQRVAVKFLEKLGIKADVASNGNEVLSNLENHQYDLIFMDFQMPILDGLR 789

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII--AMTANALSESAEECFAN 978
            +  IR  E    W                      R PI    +TAN +S   + CF N
Sbjct: 790 CSYTIRQMETAKIWPM--------------------RFPIFICGLTANTMSTDKKRCFDN 829

Query: 979 GMDSFVSKPVTFQKLKECLE 998
           GM+ F+SKP    +L+  +E
Sbjct: 830 GMNWFISKPFQIGELRTAIE 849



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIG+P  +   +F  ++Q     +RKYGG+GLGL +C +LV+LM G + V +  H 
Sbjct: 634 VQDTGIGVPPESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVKLMRGEIGVYNNQHG 693

Query: 656 GSTFTFILPYQV-SPIEENSD 675
           GSTF FILP  V S +EE+++
Sbjct: 694 GSTFWFILPLNVGSEMEEHAN 714


>gi|27379871|ref|NP_771400.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27353024|dbj|BAC50025.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 775

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 25/206 (12%)

Query: 303 SKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
           ++ +    +P + + G+ +G    G DVT++ R  +  A+ R +                
Sbjct: 327 ARLWSFTAKPAYDRDGQFLGYRGFGRDVTERWRAEKAEAESRAK---------------- 370

Query: 363 ITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
                      LA MSHEIR+P+ GV+ +A +L  T+LD EQR+ +  +  SGD + +++
Sbjct: 371 --------SDFLAVMSHEIRTPMNGVLGLASMLLETRLDPEQREAVATIRESGDNLQRIL 422

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGD 481
           NDILDLSK+E+G    EA  F P  +V+ V     AS + K L ++ ++  ++P  + GD
Sbjct: 423 NDILDLSKLEAGRFAFEAIDFAPHALVETVATVVRASAKSKGLTVKVELDPNLPPTLRGD 482

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGI 507
           V RIRQ+L NL SNA+KFT EG+V I
Sbjct: 483 VARIRQVLLNLASNAVKFTDEGEVTI 508



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 79/157 (50%), Gaps = 32/157 (20%)

Query: 841 SQSPSSSSA----EVPETKPK----PKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNN 891
           SQ+P+S  A    E  E K       +P K+L+ ED+ +N +V   M+      + VV +
Sbjct: 598 SQAPASDQAAGRDEADELKAHIAELDRPLKVLVAEDDAVNRLVVSKMLGAFDVELRVVTD 657

Query: 892 GVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951
           GVEAV A    +YD++LMDV MP MDGL ATR IR+                        
Sbjct: 658 GVEAVAAASEGDYDVVLMDVRMPDMDGLAATRAIRA-----------------------Q 694

Query: 952 SNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
              F+ +PIIA+TANA  E  + C   GM  F++KP+
Sbjct: 695 GGRFEALPIIALTANAFPEDVKICREAGMSDFLAKPL 731



 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 567 KHDDDPGTPVSHGNSMDEDLEATV-WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARK 625
           K  D+    +S       DL ATV W    V D+GIGI    L  LF  + Q  A  +R+
Sbjct: 499 KFTDEGEVTISATCQTRRDLLATVEWT---VKDSGIGIAPEKLGLLFSDFAQADASISRR 555

Query: 626 YGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF--ILPYQVSPIEENS---DDPDDL 680
           +GGTGLGLAI ++++E MGG + VTS    GSTF F  +LP+  +P  + +   D+ D+L
Sbjct: 556 FGGTGLGLAISRRIIEQMGGTIGVTSTPGEGSTFRFTLVLPWSQAPASDQAAGRDEADEL 615


>gi|388582549|gb|EIM22853.1| hypothetical protein WALSEDRAFT_15956 [Wallemia sebi CBS 633.66]
          Length = 1174

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 142/265 (53%), Gaps = 27/265 (10%)

Query: 323 VNYMGMDVTDQVRKREKMAK------LREEIAVQKAKE-----TELNKTIHITEETM--- 368
           VN M  ++T QVR   +++       +   I V+ + E     T++N+ ++   E++   
Sbjct: 569 VNTMASNLTSQVRGFAQISAAAVGGDVTRFITVEASGEMDSLKTKINQMVYNLRESIQRN 628

Query: 369 -----------RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGD 416
                      R+K + LA  SHEIR+P+ G++ +  +   T+L R QR+ L ++ +   
Sbjct: 629 TAAREAAELANRSKSEFLANTSHEIRTPMNGIIGLTGLTLETELTRTQRENLMIVANLAS 688

Query: 417 LVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVP 475
            +L +I+DILD+SK+E+G M +E   +  R V+  VL+T A  + Q  L L  DI   +P
Sbjct: 689 SLLAIIDDILDISKIEAGRMSVETVPYSLRSVIFTVLKTLATKAAQNKLDLIYDIEPHIP 748

Query: 476 IEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDA 535
            +VIGD LR++QI+TNLI NA+KFT +G + + + +V  PP A EG              
Sbjct: 749 DQVIGDPLRVKQIITNLIGNAVKFTQQGYIALSVEMVDVPPNANEGAIMLQFCVADTGIG 808

Query: 536 VKEEKHQPKSQTASDQNGFHDKKHG 560
           ++ +K +   +T +  +G   +K+G
Sbjct: 809 IESDKLEVIFETFAQADGSTTRKYG 833



 Score = 96.3 bits (238), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 77/142 (54%), Gaps = 26/142 (18%)

Query: 852  PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-----QNYDL 906
             +T PK    ILL EDN +N  +A   ++Q GH  ++V NG  AV A++      + YDL
Sbjct: 1009 ADTDPKEHYDILLAEDNVVNQKLATKYLEQSGHKCEIVGNGALAVEALKSRASSDRAYDL 1068

Query: 907  ILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966
            ILMDV MPVM G++AT +IR  E         E G             ++R PIIA+TA+
Sbjct: 1069 ILMDVSMPVMGGIEATTVIRQLEQ--------EYG-------------YERTPIIALTAH 1107

Query: 967  ALSESAEECFANGMDSFVSKPV 988
            A+    E C   GMD +V+KP+
Sbjct: 1108 AMMGDRERCINAGMDEYVTKPL 1129



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 48/81 (59%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E  + ++  V DTGIGI  + L  +F  + Q      RKYGGTGLGL+I K+LV LMGG 
Sbjct: 793 EGAIMLQFCVADTGIGIESDKLEVIFETFAQADGSTTRKYGGTGLGLSISKRLVNLMGGE 852

Query: 647 LTVTSKVHCGSTFTFILPYQV 667
           + V SK   GS F F +  QV
Sbjct: 853 MWVESKYDQGSQFYFTVLLQV 873


>gi|428213913|ref|YP_007087057.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
 gi|428002294|gb|AFY83137.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
          Length = 1680

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 149/295 (50%), Gaps = 34/295 (11%)

Query: 224  LHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKR-- 281
            L  ++  APV M   D  LRY      + S +  D+ G     I           F+R  
Sbjct: 829  LREIINRAPVAMAMFDHNLRYIAHSQKWFSDYGGDLSGPNPSWIGCHFFAVMPDLFERWH 888

Query: 282  EVLEKGLPAKREITFETELF----GSKTFLIY-VEPVFSKSGETIGVNYMGMDVTDQVRK 336
             +L++ L A   I+   + +    GSK +  + ++P +S +GE  G+      VTD + +
Sbjct: 889  PLLDRVL-AGETISSGEDCWERADGSKLYQRWAIQPWYSPTGEVGGIAI----VTDNINE 943

Query: 337  REKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEIL 395
                        + +A+ET L        E  R K Q LA MSHEIR+P+ GV+ M  +L
Sbjct: 944  ------------LVEARETAL--------EAARIKSQFLANMSHEIRTPMNGVLGMTGLL 983

Query: 396  SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ- 454
              T L  +QR     +  SG+ +L++INDILD SK+E+G M LE+  F+    ++ V+  
Sbjct: 984  LQTSLSNQQRDCAETIRISGEHLLRVINDILDFSKLEAGEMNLESLDFQLSTCIEEVVDL 1043

Query: 455  TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             AA + QK L L   I   VP  +IGD  R+RQIL NLI+N IKFT  G+V +++
Sbjct: 1044 LAAPAHQKGLELAVWIDPKVPQHLIGDPARLRQILLNLINNGIKFTHRGEVVVQV 1098



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 8/157 (5%)

Query: 846  SSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
            S S + P   P   P KIL+ ED+ IN  V    ++ LG+  + V NGVEA+  +  ++Y
Sbjct: 1382 SDSPQNPVPSPIHSPVKILVAEDHPINQQVILQQLEALGYQGECVGNGVEAIARLGQKHY 1441

Query: 905  DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
            D++LMD  MP +DG + T+ IR  E TG+   + E+      P         +  +IA+T
Sbjct: 1442 DIVLMDCQMPGLDGYQTTQEIRKREATGSLCQSTESDSPDHSPP-------HKTVVIALT 1494

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            A+A+S   E+C A GMD ++SKPV    L   LE++ 
Sbjct: 1495 AHAMSAEREKCLAAGMDDYLSKPVHLDHLSALLERWI 1531



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 51/77 (66%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            VW+R  V DTGIGIP+     LF+ + QV     R+YGGTGLGLAICKQLVELMGG + V
Sbjct: 1114 VWLRFTVQDTGIGIPKERQNKLFQSFSQVDTSTTRRYGGTGLGLAICKQLVELMGGEIGV 1173

Query: 650  TSKVHCGSTFTFILPYQ 666
             S    GS F F L ++
Sbjct: 1174 ESYPDRGSNFWFELKFR 1190


>gi|242280788|ref|YP_002992917.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123682|gb|ACS81378.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 1375

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/180 (41%), Positives = 108/180 (60%), Gaps = 6/180 (3%)

Query: 339  KMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSN 397
            + A L +EI   K  E  L + I  TEE   AK   LA+MSHEIR+PL  ++ +A++L N
Sbjct: 838  RTADLNQEIEEHKKTEKRLEQAILRTEEANEAKSAFLASMSHEIRTPLNSILGVADLLKN 897

Query: 398  TKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAK---FRPREVVKHVLQ 454
            T L  EQ + + +  SSG+++L +INDILD SK+E+  +KLE       +  E +  +  
Sbjct: 898  TDLSDEQGEYVNIFESSGEILLTIINDILDFSKIEANHVKLENIPVDLLQETESLMQLQA 957

Query: 455  TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
            TAA+S    L++      DVP  V+GD  RIRQIL N+++NA+KFT  G+V I +   PE
Sbjct: 958  TAASSRHVELVMR--YKPDVPEIVLGDSTRIRQILLNILANAVKFTSSGEVSIVVSRSPE 1015



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 51/87 (58%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            I   + DTGIGI    L ++F  + Q  +   RKYGG+GLGL+I ++L ELMGG +T +S
Sbjct: 1022 ITFTISDTGIGIAPEKLDSIFEPFSQADSSTTRKYGGSGLGLSISRKLAELMGGTITASS 1081

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPD 678
                GSTF   LP   +P    + +P+
Sbjct: 1082 TPGKGSTFMVTLPLPRAPQATTATEPN 1108



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 23/165 (13%)

Query: 824  TNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLG 883
            T+  Q +  M E  D   +   +S+A  P+++  P  KILL EDN  N  + +  +K   
Sbjct: 1217 TSRRQLLHNMMELLDLSCEQEQASTA--PKSREIPPIKILLTEDNIPNRDLIRHFLKDTD 1274

Query: 884  HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIE 943
             ++ +  +G + +      N+D+IL+D+ MPVMDG +     RS+E             E
Sbjct: 1275 TTLAMAADGAQGLKLATNDNFDIILLDMEMPVMDGPEFLVKFRSYEK------------E 1322

Query: 944  QAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
              +P +G         +IA+TA+  +E  ++C + G D F+SKP+
Sbjct: 1323 NNLPPTG---------VIALTAHVSAEYRDKCISAGADEFLSKPI 1358


>gi|167629693|ref|YP_001680192.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
 gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 940

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 115/205 (56%), Gaps = 17/205 (8%)

Query: 309 YVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETM 368
           +V PV   SG+ + ++ M MD+T++     K   +   IA  +A+E  L K+        
Sbjct: 502 HVIPVADSSGKVVRLDGMLMDITEK-----KQVDMELRIAKVRAEEASLAKS-------- 548

Query: 369 RAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
                LA MSHEIR+P+ G++ M E+L  T+L  EQ      +  S +L+L +INDILD 
Sbjct: 549 ---SFLAMMSHEIRTPMNGIIGMNELLLGTRLTSEQLDYAQAVQESAELLLTVINDILDY 605

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
           SKVE+G M+LE+  F P  VV  V +     + +K L +   IAD+      GD  R+RQ
Sbjct: 606 SKVEAGKMELESIDFDPVPVVDGVARLLQGKAREKGLTISTFIADEARFLFQGDPGRLRQ 665

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVV 512
           +L NL+SNA+KFT  G + I+++ V
Sbjct: 666 VLLNLVSNAVKFTERGTIDIRVFPV 690



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 34/178 (19%)

Query: 836  KPDRISQSP--SSSSAEVPETKP------KP----KPKILLVEDNKINVMVAKSMMKQLG 883
            KP + SQSP  ++ S + P   P      +P    +  +L+VEDN +N  +  ++++++G
Sbjct: 774  KPLQTSQSPVHAAESRQAPLPPPVSLTSARPTGLRQASVLVVEDNPVNQKLVTALLRKMG 833

Query: 884  HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIE 943
             S+ + ++G EA+ A+  + Y LILMD  +P ++G + T++IR        D+ AE G  
Sbjct: 834  LSVRLASSGFEAIDALGEEEYALILMDCQLPDLNGFETTQVIR--------DSEAETG-- 883

Query: 944  QAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                        + IPIIAMTA ++    E+C   GMD +VSKP+  ++L   L ++ 
Sbjct: 884  ------------QHIPIIAMTALSMQGDREKCLQAGMDDYVSKPIDRKQLTAVLARWL 929



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 52/82 (63%)

Query: 585 DLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMG 644
           D  + V IR +V DTGIGI       LF+ + Q +    RKYGGTGLGLAI + LVELMG
Sbjct: 692 DTGSQVTIRFEVIDTGIGIAPEIRDCLFQPFSQGNTSMTRKYGGTGLGLAISRNLVELMG 751

Query: 645 GRLTVTSKVHCGSTFTFILPYQ 666
           G++ V SK   GSTF F LP +
Sbjct: 752 GKIGVQSKPGEGSTFWFTLPVR 773


>gi|408377685|ref|ZP_11175286.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium albertimagni AOL15]
 gi|407748676|gb|EKF60191.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium albertimagni AOL15]
          Length = 1338

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 107/163 (65%), Gaps = 6/163 (3%)

Query: 351 KAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K +E EL   +  +E   +AK   LA MSHEIR+P+ GV+ MAE+LS ++LD  Q+  + 
Sbjct: 776 KEREAELEVLLARSEAADKAKSDFLANMSHEIRTPMNGVLGMAELLSKSELDSRQKTFVD 835

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKI-LML 466
           +M+ SG+ +L +INDILD SK+++G +KL  + F P E ++ V  L +AAA+ + I L++
Sbjct: 836 IMVKSGNALLTIINDILDFSKIDAGQLKLRKSPFDPVEAIEDVATLLSAAAAEKDIELVV 895

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            GD    V    +GD  R RQI+TNL+ NAIKFT +G V +++
Sbjct: 896 SGD--QKVRHTFMGDPGRFRQIVTNLLGNAIKFTEKGHVHVEV 936



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 81/140 (57%), Gaps = 21/140 (15%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+ EDN +N +V + ++   G +  +V NG EAV A + +  DLILMDV MPVM+G +
Sbjct: 1208 RVLIAEDNPVNQIVFRQILTGSGVAYRIVGNGEEAVQAWRSEPPDLILMDVSMPVMNGHQ 1267

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT +IR+               E+A  SSG      R PII +TA+AL    E C A GM
Sbjct: 1268 ATGVIRA---------------EEAALSSG------RTPIIGVTAHALDSDREACLAAGM 1306

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D ++SKP++ + L   +EQ+
Sbjct: 1307 DDYLSKPISPELLMRKIEQW 1326



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 50/87 (57%)

Query: 581  SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
            S D   E    ++  + DTGIGIP++    +F K+ QV     R++ GTGLGLAI   LV
Sbjct: 937  STDAMAEGQAILKLRIEDTGIGIPQDMQAKIFEKFSQVDTSSTRRHEGTGLGLAITGGLV 996

Query: 641  ELMGGRLTVTSKVHCGSTFTFILPYQV 667
             L GG+L V S+V  GS FT  LP  +
Sbjct: 997  RLFGGKLQVESEVGRGSAFTVELPLAI 1023


>gi|398854572|ref|ZP_10611124.1| signal transduction histidine kinase [Pseudomonas sp. GM80]
 gi|398235277|gb|EJN21110.1| signal transduction histidine kinase [Pseudomonas sp. GM80]
          Length = 937

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ ++  E  L +     +    AK + LATMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 429 DISARRQIEAALEQARQSADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTQLDTQQ 488

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
           +  L  +  S   +LQLI D+LD+SK+E+G + LE ++F P  +V+ V+Q  AA+ Q K 
Sbjct: 489 KSYLHAIEGSSATLLQLICDVLDVSKIEAGQLALELSEFSPMMLVQEVVQGYAAAAQSKG 548

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L L   +    P  +IGD  R+RQIL NL+SNA+KFT  G+V +++ ++
Sbjct: 549 LQLYSCLDPQTPERLIGDASRVRQILNNLLSNAVKFTDSGRVVLRVKLL 597



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 26/149 (17%)

Query: 852  PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
            P T       IL+ EDN IN ++ +  +++LG ++ + ++G EA+   +   +D++L DV
Sbjct: 807  PHTLCPLHLHILVAEDNVINQLILRDQLQELGCTVALASDGEEALSIWREGEFDIVLTDV 866

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MP+++G + T  +R             AG                 PII  TANAL   
Sbjct: 867  NMPLLNGYELTAALR------------RAGCV--------------TPIIGATANALRGE 900

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQY 1000
               C A GM+  + KP T + L   L  Y
Sbjct: 901  EALCLAAGMNHCLVKPFTLRALSTILAPY 929



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V ++  V DTG GI  +    +F  + Q   +      GTGLGL IC++L  LM G L +
Sbjct: 604 VCLQWQVSDTGRGIAHDDQAFIFEPFYQTQGN-TNVVAGTGLGLPICQRLTHLMNGTLRM 662

Query: 650 TSKVHCGSTFTFILPYQ-----VSPIEENSDDPD 678
            S+   GS+F+  +P +      SP+   +  PD
Sbjct: 663 VSEPGLGSSFSLSVPLEQPSNKTSPVVVPALAPD 696


>gi|117618906|ref|YP_855570.1| response regulator/sensor histidine kinase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560313|gb|ABK37261.1| response regulator/sensor histidine kinase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 1142

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 2/171 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           LR+EI  ++  E +L       E   R K   LATMSHEIR+P+ G++ MAE L  T LD
Sbjct: 534 LRQEITRRRQVEADLALAKEAAELAARQKADFLATMSHEIRTPMNGIIGMAEQLRFTSLD 593

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQRQ++G++    + +LQLI ++LD SK+++G M L    F  RE++  VL   ++ LQ
Sbjct: 594 PEQRQMVGIINQGAEGLLQLIGNVLDYSKLDAGKMALAPTSFLLRELIDSVLTMTSSELQ 653

Query: 462 -KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
            K L L   + D+V     GDVLR++Q+L NL SNAIKFT  G + + + V
Sbjct: 654 RKGLQLYLRVDDEVGARFYGDVLRLKQVLFNLASNAIKFTERGFIELSIRV 704



 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 24/161 (14%)

Query: 840  ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
            +++  SS  + V   +P    ++L+VED+ +N ++ +  +KQL    D+  NG +A+  +
Sbjct: 889  LAEQLSSDFSSVGADQPLLPQRLLVVEDHHLNQVLVQRQLKQLNLQCDLAENGRQALAML 948

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
                YDLIL D  MPVMDG + TR +R+ E           G+ Q             +P
Sbjct: 949  TFHRYDLILCDCQMPVMDGYEFTRRVRATE-----------GLAQ-------------LP 984

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            IIAMTAN L E A+ C A GM+  + KPV    L++ L ++
Sbjct: 985  IIAMTANVLPEQAQRCLAAGMNDVLGKPVLMDGLRQMLMKW 1025



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 40/74 (54%)

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
           W+   V DTGIG+ E+    +F  + Q      R YGGTGLGL+I + L  LMGGRL + 
Sbjct: 713 WLLLGVQDTGIGMSEDVQARVFNAFEQADGATTRSYGGTGLGLSISQTLATLMGGRLRLE 772

Query: 651 SKVHCGSTFTFILP 664
           S    G+     +P
Sbjct: 773 SAPGLGTHIGLSIP 786


>gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
 gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
          Length = 1117

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 96/161 (59%), Gaps = 24/161 (14%)

Query: 841  SQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
            ++ P+  + E   ++P  K  +IL+ EDN +N  VA  ++++LGH++DVV +G EA+ AV
Sbjct: 848  AERPADHAEEYKASEPAAKRLRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAV 907

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
            +   YD++LMDV MP MDGL+ATR IR                  A+P + +     ++P
Sbjct: 908  RLLPYDVVLMDVQMPEMDGLEATRAIR------------------ALPLAAA-----QVP 944

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            I+AMTANA+    + CF  GMD ++SKP+   KL E L +Y
Sbjct: 945  IVAMTANAMRGDDQMCFDAGMDGYISKPIDRHKLAEALAKY 985



 Score = 99.8 bits (247), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 110/202 (54%), Gaps = 3/202 (1%)

Query: 316 KSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QML 374
           + G  + V Y+   V D+  +   +   R+ I  ++  E +L +     E   R K + L
Sbjct: 426 RDGSPLPVEYIASPVMDRGNQVGVVLGFRD-ITQRRLVERQLREAKEAAEAGNRTKSEFL 484

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           ATMSHEIR+P+ GV+ M  +L +T+L  EQR     +  SG+ +L +INDILD SK+E+G
Sbjct: 485 ATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDSGESLLTVINDILDFSKMEAG 544

Query: 435 VMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493
            + L+  +F    +V+ V+   A     K + +   I   + + V  D  R+RQ+L NL 
Sbjct: 545 KLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLG 604

Query: 494 SNAIKFTPEGKVGIKLYVVPEP 515
            NA+KFT +G V I++ ++  P
Sbjct: 605 GNAVKFTEKGGVSIEVSLLDGP 626



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 63/111 (56%), Gaps = 6/111 (5%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           +A    R DV DTGIGIP  A   LF  + QV A  AR+YGGTGLGLAI ++L ELMGG 
Sbjct: 627 DAPAMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGE 686

Query: 647 LTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSD----MADQDSVTDDV 693
           + V S V  GS F   LP ++  +   S  P DLS     + D + V  DV
Sbjct: 687 VGVESAVGRGSRFWITLPLEL--LAPQSAAPPDLSGHRVLVVDDNPVNCDV 735


>gi|169602473|ref|XP_001794658.1| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15]
 gi|160706176|gb|EAT87998.2| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15]
          Length = 968

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 167/316 (52%), Gaps = 28/316 (8%)

Query: 211 EELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEIFSG 270
           E+L Q++  A   L  V ++  +V+   D + R              ++LG    ++F  
Sbjct: 249 EQLQQVIAHAKILLWAVNRDNRLVLLEGDTKWRR--------DGENTELLGNDIYDVFGF 300

Query: 271 AGVKESQDFKREVLEKGLPAKREI-TFETELFGSKTFLIYVEPVFSKS--------GETI 321
            G    +D  RE +++ L  K++    E  +  ++ F   + P+ + S            
Sbjct: 301 TGA--DRDRWREPIQEILNGKQQDEIVERYMSENRYFRTRLVPLLNASRIAGAEGTAYVD 358

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEI 381
           GV  + MD+T ++R+RE   +LRE+   +K  E  L       E +    Q LA MSHEI
Sbjct: 359 GVIGVSMDIT-ELRERED--QLREQ---EKENERLLANAAAAKEASRMKSQFLANMSHEI 412

Query: 382 RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
           R+P+ GV+ M+E+LS+  LD EQ++    +  S + +L +INDILD SKVESG + +E  
Sbjct: 413 RTPIAGVIGMSELLSDMNLDEEQKECAENIHRSANSLLTVINDILDFSKVESGRLDVEEV 472

Query: 442 KFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVP--IEVIGDVLRIRQILTNLISNAIK 498
           +F    V++ V +  + A+ +K L+ +  I D+V   + V+GD  R+RQILTN+++N+IK
Sbjct: 473 QFSLSVVLRDVNKMMSFAAQRKGLVYQSTIQDEVEQDLRVMGDPGRLRQILTNVLTNSIK 532

Query: 499 FTPEGKVGIKLYVVPE 514
           FT EG V + + +  E
Sbjct: 533 FTSEGSVKLSVSISQE 548



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 10/115 (8%)

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
           S+ ++   +V +   V DTGIGI E     LF+ + Q  +  AR++GGTGLGL I K LV
Sbjct: 544 SISQETNDSVTVNFSVIDTGIGIEEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLV 603

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQVSPIEE----------NSDDPDDLSDMAD 685
           ELM G++ + SK+  G+T TF +P+  +P ++          N + PD L ++++
Sbjct: 604 ELMKGQIWLDSKLGQGTTATFWIPFSRAPSQDDGSPLSFPMINQNIPDHLMNLSE 658



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 24/130 (18%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMD---VCMPVMDG 918
           IL+VEDN+IN  +A   +K+L  S+  V NG EA+  +     D ++ D   + MP+ DG
Sbjct: 666 ILVVEDNQINQQIALKTIKKLHFSVGAVWNGQEALDYLM---QDFVVTDNIWLQMPIRDG 722

Query: 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
             AT  IR+      W    E                + +PI+AMTA+A+    E+C   
Sbjct: 723 YSATHAIRT---EAPWKDRPE---------------IRSVPIVAMTASAIQGDKEKCQLA 764

Query: 979 GMDSFVSKPV 988
           GMD +++KPV
Sbjct: 765 GMDDYLAKPV 774


>gi|71909751|ref|YP_287338.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71849372|gb|AAZ48868.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 916

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 152/297 (51%), Gaps = 33/297 (11%)

Query: 224 LHFV---LQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVEIFSGAGVKESQ 277
           LH V   ++N P+ +  +D   RY  +   +  F  +  E  +G+T  ++      ++  
Sbjct: 268 LHLVEELIENIPLPIYLKDGSGRYIRLNRAFEQFFEVRREAFIGRTLHDLLPAEDARQHA 327

Query: 278 DFKREVLEKGLPAKREITFETELF---GSKTFLIYVEPVFSK-SGETIGVNYMGMDVTDQ 333
           +   ++      AK   T+E  +    G     IY + V ++  G   G+  + +D+TD 
Sbjct: 328 EMDADLF----AAKGTQTYEATVHSQDGIAHETIYRKAVLTRRDGSVSGLLGIIVDITD- 382

Query: 334 VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMA 392
            RKR        EI V +AKE          E   RAK   LA MSHEIR+P+ GV+ M 
Sbjct: 383 -RKRA-------EIEVLRAKEA--------AEAANRAKSDFLANMSHEIRTPMNGVIGMT 426

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452
           ++   T L  EQR+ L +  SS + +L +INDILD SK+E+G +++E   F    ++   
Sbjct: 427 DLALETALTEEQREYLNIAKSSAESLLTVINDILDFSKIEAGKLQVEDIPFDLHRLIADT 486

Query: 453 LQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
           L+  A  + +K + +  D+  DVP  V GD  RIRQ+L NL+ NAIKFT +G++ ++
Sbjct: 487 LKPLALRAHEKDIEILSDVVHDVPRFVKGDPSRIRQVLVNLVGNAIKFTEQGEIALQ 543



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 35/162 (21%)

Query: 853  ETKPKPKP--------------KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
            E+ P+P P               ILLVED+  N  +A  ++ + GH   +  NG EA+  
Sbjct: 772  ESSPEPSPLLTRHSLREAQRVLNILLVEDHPTNQKLALGLLNKWGHHGTLAQNGQEALDI 831

Query: 899  VQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
            +  Q++D+ILMD+ MPVM G++AT+ IR+ E                     ++    R 
Sbjct: 832  LASQSFDIILMDMQMPVMSGVEATQRIRARE---------------------AAMQLPRT 870

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            PIIAMTA A+ +  + C A GMD +++KP+  ++L+  L  Y
Sbjct: 871  PIIAMTAAAMQDDRDACLAAGMDDYLAKPIKVKELQALLLAY 912



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 49/77 (63%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTGIGI  +    +F  + Q  +   RKYGGTGLGL+IC++LVELMGG L + S
Sbjct: 556 IHFAVRDTGIGISADKQMLIFDAFAQEDSSTTRKYGGTGLGLSICRRLVELMGGTLWLHS 615

Query: 652 KVHCGSTFTFILPYQVS 668
           +   GSTF F +  Q+S
Sbjct: 616 EPGKGSTFHFSVQLQIS 632



 Score = 46.2 bits (108), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 27/142 (19%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV--QCQNYDLILMDVCMPVMDGL 919
            +L+V+DN  N  + + M+  L  +    ++G  A+  +  Q   +D IL+D  MP MDG 
Sbjct: 650  MLIVDDNATNRRILRGMLATLHVTCQEADSGKTALALMREQGSQFDCILLDAQMPEMDGY 709

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +  R +            AE     A+P           P++ +++ AL   A  C   G
Sbjct: 710  ELARHLH-----------AE---HPALP-----------PMLMLSSGALRGDALRCQEAG 744

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            +  F +KP++  +L   L + F
Sbjct: 745  IAGFFAKPISSDELLSALGRLF 766


>gi|356502102|ref|XP_003519860.1| PREDICTED: histidine kinase 1-like [Glycine max]
          Length = 1193

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 147/298 (49%), Gaps = 45/298 (15%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEIL-SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSK 430
           Q LA MSHE+R+P+  V+ + +IL S+ +L  EQ   +  +      +L+L+N+ILDLSK
Sbjct: 486 QFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSK 545

Query: 431 VESGVMKLEAAKF-RPREVVKHV----LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           VESG + LE A+F   RE+   V    +Q    +++ +L    D++DD+P  V GD  R+
Sbjct: 546 VESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVL----DLSDDMPKLVRGDSARV 601

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
            QI  NLI+N+IKFT  G + ++ +   E P         +    +    ++++K +   
Sbjct: 602 VQIFANLINNSIKFTLSGHIVLRGWC--ENP---------NSCSDNTNFPLEQKKLRCSQ 650

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
           +T + Q+  H K+                      + + D +  +W   D  DTG GI  
Sbjct: 651 KTRAKQHENHAKR----------------------TSNRDNKMILWFEVD--DTGCGIDP 686

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
           +   ++F  + Q      R +GGTGLGL I + LV  MGG + V  K   G+     L
Sbjct: 687 SKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGSGTLMRLCL 744



 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 81/179 (45%), Gaps = 50/179 (27%)

Query: 841  SQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            S   SSSS  V   K     +ILL ED  +   VA  M++++G  +  V +G +AV A+ 
Sbjct: 1023 SNDASSSSRAVSGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGRQAVDALN 1082

Query: 901  ----------------------------CQNYDLILMDVCMPVMDGLKATRLIRSFEDTG 932
                                        C  YDLILMD  MP MDG +AT+ IR  E+  
Sbjct: 1083 GMSGVEDCRRETLLKERNTRSSQTEILSCPPYDLILMDCQMPKMDGYEATKAIRKSEE-- 1140

Query: 933  NWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
                             G+  H   IPI+A+TA+A+S    +C   GMD++++KP+ F+
Sbjct: 1141 -----------------GTGLH---IPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFK 1179


>gi|45659014|ref|YP_003100.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45602259|gb|AAS71737.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 822

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 156/332 (46%), Gaps = 73/332 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 404 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG 463

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV        
Sbjct: 464 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF------- 510

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK+ I+ YV  +P
Sbjct: 511 --SIRSVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP 550

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N                       
Sbjct: 551 ------LRLRQILWNLAGNGIKFTSRGEVVLKVTQKN----------------------- 581

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +S         +++V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 582 IS---------KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 632

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            KQLVEL GG L + SK   GS FTF + Y +
Sbjct: 633 TKQLVELQGGVLKLESKDGEGSKFTFTIDYDI 664



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 695  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 754

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 755  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 790

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 791  MNDCLTKPLDLPILKSTLDLW 811


>gi|344338260|ref|ZP_08769192.1| integral membrane sensor hybrid histidine kinase [Thiocapsa marina
           5811]
 gi|343801542|gb|EGV19484.1| integral membrane sensor hybrid histidine kinase [Thiocapsa marina
           5811]
          Length = 710

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 101/164 (61%), Gaps = 9/164 (5%)

Query: 357 LNKTIHITEETMRAKQ----MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMI 412
           L K     +E  RA Q     LA M+HE+R+PLTGVV M E+L  T+LD EQR  +  + 
Sbjct: 172 LRKVQDARDEAERANQARGDFLAFMTHELRTPLTGVVGMTELLRGTRLDDEQRDYVQAIA 231

Query: 413 SSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGD 469
           +S D++  LI DILDLSK+++  + +E   F PR +V+ V   L T A S    L L  D
Sbjct: 232 NSADILGALIGDILDLSKIDARRIVIERIPFDPRSLVREVSDALATRAHSAG--LELIAD 289

Query: 470 IADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
           +  +VP  +IGD LR+RQIL NL+ NA+KFT  G+V ++L V P
Sbjct: 290 VEPEVPPRLIGDPLRLRQILFNLMGNAVKFTSAGEVRVRLSVRP 333



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 24/154 (15%)

Query: 845 SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
           SSSS  +       + ++L+ EDN+I   V    + ++G  +  V +G  A+      +Y
Sbjct: 563 SSSSLGLEPIPDAARMRVLVAEDNEIAAKVITRFLGKMGFELTRVADGEAALAEALGGDY 622

Query: 905 DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
            + ++D+ MP +DG+   R  R                EQ           + IPI+A+T
Sbjct: 623 GIAIVDLRMPKLDGIGFARRYR----------------EQV--------RHRPIPIVALT 658

Query: 965 ANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
           ANA  +   +C + GMD F+SKPV   +L+  LE
Sbjct: 659 ANASEDVKRDCLSAGMDDFLSKPVKPDELRRVLE 692



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 41/70 (58%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIGIP   LP LF ++ Q      R++GGTGLG  I ++L  LMGG + V S   
Sbjct: 346 EVLDTGIGIPPEKLPRLFERFRQADESTTRRFGGTGLGTTISRELTLLMGGAIGVESAEG 405

Query: 655 CGSTFTFILP 664
            GS F   LP
Sbjct: 406 RGSRFWIRLP 415


>gi|189423669|ref|YP_001950846.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419928|gb|ACD94326.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 957

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 134/262 (51%), Gaps = 21/262 (8%)

Query: 248 YNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFL 307
           +        E++LGK+ +E+   A   +     +E+ + G     E  F           
Sbjct: 476 FTAIAGYQPEEVLGKSSLELNIWANPADRLQLVQELQQHGFVRNLEAQFR---------- 525

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEET 367
                   K G  I        +T  V   + +  +  +I+ +K  E EL +     E  
Sbjct: 526 -------CKDGSLITGQMSARIIT--VNGEQCLLNITRDISERKRYEEELQQARQAAEAA 576

Query: 368 MRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
            RAK + LA MSHEIR+P+ GV+ M ++L  T+L+ EQ++ L  + +S   +L L+NDIL
Sbjct: 577 NRAKSEFLANMSHEIRTPMNGVIGMVQLLQFTRLNSEQQEYLQCLETSAQNLLSLLNDIL 636

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRI 485
           DLSK+E+G + LE A F  R  ++ V+ T  + + QK L L   +ADD+P  + GD LR+
Sbjct: 637 DLSKIEAGKISLEYADFSLRHSIQEVVTTQISQIHQKRLKLTTSLADDIPEILHGDPLRL 696

Query: 486 RQILTNLISNAIKFTPEGKVGI 507
           +QIL NL+ NAIKFT  G + I
Sbjct: 697 KQILLNLLGNAIKFTAAGSITI 718



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 25/163 (15%)

Query: 839 RISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
           R+  +P+++ A +       +  ++LL EDN  N     +M+K++GH ++VVN+G +A+ 
Sbjct: 808 RMQTAPAAAPAVLQSATGSTRSLQLLLAEDNAPNAATITAMLKRMGHQVEVVNDGKQALD 867

Query: 898 AVQCQNYDLILMDVCMPVMDGLKATRLIRSFE-DTGNWDAAAEAGIEQAMPSSGSSNHFK 956
             +C  YD +L+DV MPVM G +ATRLIR  E  TG                       +
Sbjct: 868 RWRCNRYDALLLDVSMPVMGGSEATRLIREEEQQTG-----------------------Q 904

Query: 957 RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            IPIIA+TA+AL    +    NG D +V+KPV  Q L   LE+
Sbjct: 905 HIPIIAVTAHALRGDRDLFLQNGFDGYVAKPVDMQHLARELER 947



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 47/80 (58%)

Query: 588 ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
            T+ I   V DTGIG+   AL  +F  + Q      R++GGTGLGL IC++L ELMGGR+
Sbjct: 728 GTLTICLSVSDTGIGMTPEALQRIFAPFEQADNSTTRRFGGTGLGLTICRRLAELMGGRI 787

Query: 648 TVTSKVHCGSTFTFILPYQV 667
              S    GS+F   LP+ V
Sbjct: 788 WAESSDGHGSSFFVELPFAV 807


>gi|418727285|ref|ZP_13285880.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
           12621]
 gi|409959526|gb|EKO23296.1| 7TM diverse intracellular signaling [Leptospira interrogans str. UI
           12621]
          Length = 820

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 156/332 (46%), Gaps = 73/332 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 402 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG 461

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV        
Sbjct: 462 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF------- 508

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK+ I+ YV  +P
Sbjct: 509 --SIRSVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP 548

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N                       
Sbjct: 549 ------LRLRQILWNLAGNGIKFTSRGEVVLKVTQKN----------------------- 579

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +S         +++V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 580 IS---------KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 630

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            KQLVEL GG L + SK   GS FTF + Y +
Sbjct: 631 TKQLVELQGGVLKLESKDGEGSKFTFTIDYDI 662



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 693  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 752

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 753  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 788

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 789  MNDCLTKPLDLPILKSTLDLW 809


>gi|334120111|ref|ZP_08494194.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
 gi|333457293|gb|EGK85918.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
          Length = 1521

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 100/166 (60%), Gaps = 10/166 (6%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           ++ + KA++  L  T        RAK + LATMSHEIR+P+ GV+ M  +L +T L REQ
Sbjct: 670 DVDLAKARDQALAAT--------RAKSEFLATMSHEIRTPMNGVIGMTGLLLDTPLTREQ 721

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKIL 464
           R  +  + SSGD +L LINDILD SK+ESG + LE   F  R  ++  L   AA   +  
Sbjct: 722 RDFVETIRSSGDALLTLINDILDFSKIESGKLDLEEHPFDIRTCIEESLDLVAAKAAEKK 781

Query: 465 MLEGDIAD-DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           +  G + D  VP   IGD  R+RQIL NL+SNA+KFT  G+V + +
Sbjct: 782 LEVGYLIDRAVPATAIGDSTRLRQILINLLSNAVKFTEAGEVVVAV 827



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 47/184 (25%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL +D+ +N  VA  +++++G+  DV  NG+E + A++ Q YD++LMDV MP MDGL+
Sbjct: 1146 RILLADDHLVNQKVALQILQRMGYRADVAGNGIEVLEALRRQPYDVVLMDVQMPEMDGLE 1205

Query: 921  ATRLIR--------------------SFEDTGNWDAAAE--AGIEQAMPSSGSSNHFKRI 958
             TR IR                    + E + N D+      G + +     S+N   RI
Sbjct: 1206 TTRRIREQFSADLTLENHTGESEISVTNEPSNNLDSTKNPTGGSKVSATDEQSNNRKSRI 1265

Query: 959  P-------------------------IIAMTANALSESAEECFANGMDSFVSKPVTFQKL 993
                                      I+AMTANA+    EEC A GMD ++SKP+  ++L
Sbjct: 1266 QNPKLTEEESNNRKSKIENRKSTRPWIVAMTANAMQGDREECMAAGMDDYLSKPIAIEQL 1325

Query: 994  KECL 997
               L
Sbjct: 1326 VRAL 1329



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 43/60 (71%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTGIGIP + +  LF+ + QV +  +R+YGGTGLGLAI K+L E+MGGR+ V S
Sbjct: 858 IHFAVKDTGIGIPSDRMDRLFKSFSQVDSSTSRQYGGTGLGLAISKRLAEMMGGRMWVES 917


>gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 951

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 118/190 (62%), Gaps = 11/190 (5%)

Query: 329 DVTDQVRKRE-KMAKLREEIAVQKAKET--------ELNKTIHITEETMRAK-QMLATMS 378
           ++  Q++ R+ ++A  R ++ ++ A  T        EL + +   +   RAK Q LA MS
Sbjct: 231 EMLGQIQTRDNELASYRTQLELKVALRTRELELTVAELQRAMEAAQAASRAKSQFLANMS 290

Query: 379 HEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKL 438
           HEIR+P+ G++ MAE+L  T+LD +QR+ +  +  SG+ +L +INDILD SK+E+G ++L
Sbjct: 291 HEIRTPMNGMLGMAELLMATRLDEQQRRFVSSVRRSGEALLSIINDILDFSKIEAGKLEL 350

Query: 439 EAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAI 497
           E   F   + V  V++  A +  +K L +   + +DVP  ++GD +R+ Q+L NL+ NA+
Sbjct: 351 EETAFNLEDTVADVIELLAETAHRKGLEIAALVENDVPPVLLGDQVRVHQVLMNLVGNAV 410

Query: 498 KFTPEGKVGI 507
           KFT +G+V I
Sbjct: 411 KFTDQGEVII 420



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 91/160 (56%), Gaps = 24/160 (15%)

Query: 847  SSAEVPETKPKPKP-----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
            SSA  P+   +P P     ++LLVEDN +N  VA +M++  G  + V NNG EA+  +  
Sbjct: 653  SSAVQPQQSAEPGPVRLSAEVLLVEDNPVNQDVATAMLECSGCRVSVANNGAEALDVMTR 712

Query: 902  QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII 961
            + +DLI MD  MPVMDG  ATR IR  E  GN    ++AG       SG      R  II
Sbjct: 713  RRFDLIFMDCQMPVMDGYAATRAIRQCE--GN----SQAG-------SG------RRTII 753

Query: 962  AMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            A+TA+A+    EECFA GMD +++KP T  +L   L+++ 
Sbjct: 754  ALTAHAMRGDREECFAAGMDDYLTKPFTQAQLVAVLQRWL 793



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E TV IR  V DTGIGI +     +F  + Q      RKYGGTGLGL I +QLVELMGG 
Sbjct: 431 EVTVLIR--VSDTGIGISDEVKGRIFDGFSQADNSTTRKYGGTGLGLTIARQLVELMGGE 488

Query: 647 LTVTSKVHCGSTFTFIL 663
           + V S+V  GSTF F L
Sbjct: 489 IGVESEVGRGSTFWFTL 505



 Score = 43.9 bits (102), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV----HAVQCQN-YDLILMDVCMPV 915
           + LLV+DN  N+ +    +   G + D+ +N   A+    HA + ++ YDL ++D+ MP 
Sbjct: 527 RALLVDDNSTNLSIMHHELHAWGMTADMADNAATALGLMRHAARAESPYDLAILDMLMPE 586

Query: 916 MDGLKATRLIRSFED 930
           M+G++  R I++  D
Sbjct: 587 MNGIELARAIKANPD 601


>gi|418667248|ref|ZP_13228660.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Pyrogenes str. 2006006960]
 gi|410756851|gb|EKR18469.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Pyrogenes str. 2006006960]
 gi|455793265|gb|EMF44967.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Lora str. TE 1992]
          Length = 820

 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 156/332 (46%), Gaps = 73/332 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 402 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG 461

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV        
Sbjct: 462 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF------- 508

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK+ I+ YV  +P
Sbjct: 509 --SIRSVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP 548

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N                       
Sbjct: 549 ------LRLRQILWNLAGNGIKFTSRGEVVLKVTQKN----------------------- 579

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +S         +++V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 580 IS---------KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 630

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            KQLVEL GG L + SK   GS FTF + Y +
Sbjct: 631 TKQLVELQGGVLKLESKDGEGSKFTFTIDYDI 662



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 693  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 752

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 753  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 788

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 789  MNDCLTKPLDLPILKSTLDLW 809


>gi|220908654|ref|YP_002483965.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865265|gb|ACL45604.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1433

 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 330  VTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGV 388
            +TD   +  ++  +  +I+ +K  E EL +     E   RAK   LATMSHEIR+P+  V
Sbjct: 846  ITDANNQPIRLIGMSFDISDRKQAEAELLQAKETAEAATRAKGDFLATMSHEIRTPMNAV 905

Query: 389  VSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448
            + M  +L NT L  EQRQ    + ++G+ +L +INDILD S++ESG + LE   F     
Sbjct: 906  IGMTGLLLNTPLSPEQRQYGETIRNAGESLLSVINDILDFSRIESGHLDLEEHPFELPHC 965

Query: 449  VKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
            V  V+   A  +++K L LE  I   VP  ++ D  R+RQIL NL++NA+KFT +G+V I
Sbjct: 966  VAEVIDLLANRAVEKSLHLEVQIDPGVPAVIVADSARLRQILVNLVANALKFTDQGEVMI 1025

Query: 508  KLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKH--QPKSQTAS 549
            ++  V   P  ++   + S        A K+ +H  QP SQ  S
Sbjct: 1026 RVKSVAVSPDGQQQTLEFSVQDTGIGIAPKQLEHLFQPFSQVDS 1069



 Score = 99.8 bits (247), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 35/175 (20%)

Query: 837  PDRISQSPSSSSAEVPETKPKP---------KPKILLVEDNKINVMVAKSMMKQLGHSID 887
            P R+S +P     + P    +P           KIL+ EDN  N  V + M++QLG++ D
Sbjct: 1113 PVRVSLTPIMPRIDPPSLTSQPWDSSFALRYPLKILVAEDNTTNQQVIRLMLQQLGYAAD 1172

Query: 888  VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMP 947
            +V NG EA+ A+  Q YDL+ MD+ MP+MDGL ATR IR       W             
Sbjct: 1173 LVANGQEAIQALNQQPYDLLFMDLQMPIMDGLSATRQIRQSMGPDPW------------- 1219

Query: 948  SSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                        II ++ANA +++  E F  GM+ +++KP+  + L   L Q FP
Sbjct: 1220 ------------IIGLSANAFADTQAEAFVAGMNDYLTKPLKIETLAAAL-QGFP 1261



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGI    L  LF+ + QV +   R+YGG+GLGL I K+L E MGG++ V S+   
Sbjct: 1045 VQDTGIGIAPKQLEHLFQPFSQVDSSSTRRYGGSGLGLVISKRLCERMGGQIRVQSRAGV 1104

Query: 656  GSTFTFILPYQVS--PIEENSDDP 677
            GSTF+F LP +VS  PI    D P
Sbjct: 1105 GSTFSFTLPVRVSLTPIMPRIDPP 1128


>gi|452844597|gb|EME46531.1| hypothetical protein DOTSEDRAFT_70515 [Dothistroma septosporum
           NZE10]
          Length = 1166

 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 110/350 (31%), Positives = 168/350 (48%), Gaps = 49/350 (14%)

Query: 345 EEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
           EE   Q+  E E +K     E    +K + +A +SHE+++PL G++ M  +         
Sbjct: 541 EERVQQRTAELEFSK--KAAEAANESKTLFIANISHELKTPLNGILGMCAVCMQEDDPTR 598

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESG-VMKLEAAKFRPREVVKHVL-----QTAA 457
            ++ LG++  SGDL+L L+ D+L  SK + G  + L+   FR R++    L     Q+  
Sbjct: 599 LKRSLGIIYKSGDLLLNLLTDLLTFSKNQVGQTLSLDEKDFRLRDISSQTLAIFEKQSKE 658

Query: 458 ASLQKILMLEG-DIADDVP--------IEVIGDVLRIRQILTNLISNAIKFTPEG-KVGI 507
             +   +  EG D  +  P        + + GDV RI Q++ NL+SN++KFTP G  V +
Sbjct: 659 GEIDLRVQFEGVDSGEIGPGATGRLRDMILWGDVHRILQVVINLVSNSLKFTPAGGSVVL 718

Query: 508 KLYVVPEPP--------FAKEGLKQKSKA--YQSATDAVKEEKHQPKSQTASDQNGFHDK 557
            +  +PE P        F   G +  +    YQ ++ +V      P+  TA+  N   DK
Sbjct: 719 TIRCLPELPDLGSRKSSFHSRGPRPSTSVSEYQGSSLSV------PRLSTANAINA-KDK 771

Query: 558 KHGEG-YQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYM 616
            H        +H   P     H           V+   +V DTG GIPEN    +F  ++
Sbjct: 772 PHAMARVSTTEHHSSPSN-AKH-----------VFFEFEVRDTGPGIPENQQDKIFEPFV 819

Query: 617 QVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666
           Q     ++KYGGTGLGL+IC QL  LM G++ V S V  GSTFT  +P +
Sbjct: 820 QGDLGLSKKYGGTGLGLSICSQLASLMRGQMCVRSTVGVGSTFTMKIPLR 869



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 33/149 (22%)

Query: 859  KPKILLVEDNKINVMVAKSMMK-QLGHSIDVVNNGVEAVHAVQ------CQNYDLILMDV 911
            K ++L+ EDNKIN  V   M+K +  + + V  +G EA+  V+         ++LI MDV
Sbjct: 971  KIRVLVAEDNKINQEVVLRMLKLEDVYDVTVAKDGQEALDVVKESMRGGGPPFNLIFMDV 1030

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MP +DG+++T+LIR            E G +               PI+A+TA A   +
Sbjct: 1031 QMPNVDGIQSTKLIR------------EIGYQA--------------PIVALTAFAEESN 1064

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             ++C  +GM+ F++KP+   +LK+ L++Y
Sbjct: 1065 IKDCLDSGMNYFLAKPIRRPQLKKVLKEY 1093


>gi|421105997|ref|ZP_15566573.1| 7TM diverse intracellular signaling [Leptospira kirschneri str. H2]
 gi|410008719|gb|EKO62379.1| 7TM diverse intracellular signaling [Leptospira kirschneri str. H2]
          Length = 804

 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 149/332 (44%), Gaps = 73/332 (21%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L  TKL+
Sbjct: 391 LKKEIQQRRETEWELIQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGTTKLN 450

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQ++ + V+  S   +LQ+INDILD SK+E+G               K +L+    S++
Sbjct: 451 DEQKEYVEVLSVSAKSLLQIINDILDFSKIEAG---------------KVILEREVFSIR 495

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEPPFAKE 520
            +L       D+           I  +L  L     I F  EGK  I+ YV  +P     
Sbjct: 496 SVL-------DE-----------IHDLLFPLAKQKEIDFRLEGKSEIQEYVYGDP----- 532

Query: 521 GLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGN 580
            L+ +   +  A + +K           + +N   D                        
Sbjct: 533 -LRLRQILWNLAGNGIKFTNRGEVVLKVAQKNISKD------------------------ 567

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
                    V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I KQLV
Sbjct: 568 --------GVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLV 619

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQVSPIEE 672
           EL GG L + SK   GS FTF + Y +  I E
Sbjct: 620 ELQGGVLKLESKEGKGSKFTFTIDYDIPSILE 651



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 677  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLETFDIILMDIHMPEVDGIE 736

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N   + P IIA+TA+A+  S E+  + G
Sbjct: 737  ATKWIR------------------------SKNQNSKFPIIIALTADAIESSREKYISKG 772

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 773  MNDCLTKPLDLPILKSTLDLW 793


>gi|406976746|gb|EKD99097.1| hypothetical protein ACD_23C00130G0002 [uncultured bacterium]
          Length = 777

 Score =  121 bits (303), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 102/159 (64%), Gaps = 2/159 (1%)

Query: 353 KETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVM 411
           +  EL +   I EE   AK + LATMSHEIR+P+ GV+ MAE+L  + L   Q + +  +
Sbjct: 253 RTAELRQAKEIAEEANHAKSEFLATMSHEIRTPMNGVLGMAELLLKSPLAPGQYRYVEAV 312

Query: 412 ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDI 470
             SG  +L +INDILD SK+ESG ++LEA  F   E++K  +      ++ K L L  DI
Sbjct: 313 EKSGRHLLHIINDILDFSKIESGYIELEAMDFDLIELIKETVAMFEQPVRSKGLELIVDI 372

Query: 471 ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           +D+  + V GD LRIRQILTNL+SNA+KFT  G++ +KL
Sbjct: 373 SDERTMMVCGDPLRIRQILTNLLSNAVKFTKHGEITLKL 411



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 21/152 (13%)

Query: 851  VPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMD 910
            V + + +    +LL EDN++N +VA +M+K  G     V NG +AV  ++ +++DL+LMD
Sbjct: 507  VSQVQEQLGGTVLLAEDNEVNQIVALAMLKNFGIEARAVENGRDAVALLRSRSFDLVLMD 566

Query: 911  VCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970
              MP MDG +AT  IR FE T N                      +R PIIA+TANA++ 
Sbjct: 567  CQMPEMDGFQATMAIRRFEVTSN---------------------LRRTPIIALTANAVTG 605

Query: 971  SAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
              E+C ++GMD +++KP T ++L   L ++ P
Sbjct: 606  DREKCLSSGMDDYLAKPYTGEQLATMLSRWLP 637



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG+GIP  A   +F  + Q      RK+GGTGLGL I + L +LMGG +TV S+   
Sbjct: 427 VSDTGVGIPYIAREKIFEVFSQADGSTTRKFGGTGLGLTISRHLAQLMGGDITVESEPGF 486

Query: 656 GSTFT--FILP 664
           GS F    +LP
Sbjct: 487 GSVFCVKLMLP 497


>gi|421125137|ref|ZP_15585393.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Grippotyphosa str. 2006006986]
 gi|421135628|ref|ZP_15595749.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Grippotyphosa str. Andaman]
 gi|410020292|gb|EKO87096.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Grippotyphosa str. Andaman]
 gi|410437433|gb|EKP86533.1| 7TM diverse intracellular signaling [Leptospira interrogans serovar
           Grippotyphosa str. 2006006986]
          Length = 820

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 156/332 (46%), Gaps = 73/332 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 402 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSNFLANMSHEIRTPMNGVLGMVQLLG 461

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV        
Sbjct: 462 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF------- 508

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK+ I+ YV  +P
Sbjct: 509 --SIRSVL-------DE-----------IHDLLYPLAKQKEINFRLEGKLEIQEYVYGDP 548

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N                       
Sbjct: 549 ------LRLRQILWNLAGNGIKFTSRGEVVLKVTQKN----------------------- 579

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +S         +++V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 580 IS---------KSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 630

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667
            KQLVEL GG L + SK   GS FTF + Y +
Sbjct: 631 TKQLVELQGGVLKLESKDGEGSKFTFTIDYDI 662



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 693  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLEAFDIILMDIHMPEVDGIE 752

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N     P IIA+TA+A+  S E+  + G
Sbjct: 753  ATKWIR------------------------SKNQNSEFPIIIALTADAIESSKEKYISKG 788

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 789  MNDCLTKPLDLPILKSTLDLW 809


>gi|114569266|ref|YP_755946.1| histidine kinase [Maricaulis maris MCS10]
 gi|114339728|gb|ABI65008.1| histidine kinase [Maricaulis maris MCS10]
          Length = 553

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 5/144 (3%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LATMSHEIR+PL GV+ + ++L  T LD EQ + + V+  SG ++L+L+NDILDLSK+E
Sbjct: 164 FLATMSHEIRTPLNGVLGVTQLLQATTLDAEQAEFVRVIDDSGKILLRLLNDILDLSKIE 223

Query: 433 SGVMKLEAAKFRPREVVK--HVLQTAAASLQKILM-LEGDIADDVPIEVIGDVLRIRQIL 489
           +G M+LE   FRP  +V+    L +A A  + I   +E D  +D   E  GD +RI+Q+L
Sbjct: 224 AGKMELEVTPFRPSTLVRDAQTLWSAQAREKGIAFSIEADCDEDAQYE--GDPVRIKQLL 281

Query: 490 TNLISNAIKFTPEGKVGIKLYVVP 513
            NLISN IKFT  G V +++  +P
Sbjct: 282 FNLISNGIKFTQSGSVAVRMQFLP 305



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 86/165 (52%), Gaps = 26/165 (15%)

Query: 840  ISQSPSSSSAEVPETKPK---PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
            ++ +P + SA    T P    P   IL+ EDN  N  VA+  +K  G S D V NG  A+
Sbjct: 389  VTTAPQTVSAATCNTAPATVLPACNILVAEDNPTNQAVARGFLKLRGLSADFVENGQAAI 448

Query: 897  HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
             AV+ ++Y LILMD+ MPVMDGL A++ IRS                   PS        
Sbjct: 449  DAVKLRDYSLILMDMEMPVMDGLAASQTIRSL----------------GSPSG------- 485

Query: 957  RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            RIPI+A+TANA+ ++   C   GMD F++KP+    L   L++Y 
Sbjct: 486  RIPIVALTANAVGQAERRCIDAGMDDFITKPIVRADLDRILDKYL 530



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 49/75 (65%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R +V DTG GIP+ AL  LF  + Q      R +GGTGLGLAIC++L ELMGG + VTS
Sbjct: 313 MRVEVVDTGCGIPDTALRELFSAFKQADVATNRLHGGTGLGLAICRRLAELMGGSVDVTS 372

Query: 652 KVHCGSTFTFILPYQ 666
           +   GS F F +P +
Sbjct: 373 RPGEGSKFWFDIPLK 387


>gi|381158345|ref|ZP_09867578.1| PAS domain S-box [Thiorhodovibrio sp. 970]
 gi|380879703|gb|EIC21794.1| PAS domain S-box [Thiorhodovibrio sp. 970]
          Length = 1274

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 20/234 (8%)

Query: 302 GSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTI 361
           G++       P     G  +   Y+G D++D       +           A ET +N+  
Sbjct: 490 GTRWLRGTANPERLADGSVLWHGYIG-DISDYKNAENALRN------ANSALETAINQAN 542

Query: 362 HITEET---MRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDL 417
            + E+     RAK + LA MSHEIR+P+ GV+ M  +L  T +D +QRQ   ++ SSG+ 
Sbjct: 543 ALAEQADSANRAKSEFLANMSHEIRTPMNGVIGMTSLLLETPMDDQQRQYAEIIRSSGES 602

Query: 418 VLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-----QKILMLEGDIAD 472
           +L +INDILD SK+E+G ++LEA  F     +++VL   AASL     +K L        
Sbjct: 603 LLGVINDILDFSKIEAGRLELEAIDFD----LRNVLDDLAASLALRAHEKSLEFICAADA 658

Query: 473 DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKS 526
            VP ++ GD  R+RQILTNL  NAIKFT  G+V +++++  + P + + L+  +
Sbjct: 659 GVPAQLRGDASRLRQILTNLAGNAIKFTEVGEVSVRVHLAEQQPASVDSLEDSA 712



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 28/172 (16%)

Query: 837  PDRISQSPS-SSSAEVPETKPKPKP------KILLVEDNKINVMVAKSMMKQLGHSIDVV 889
            P R + + + S   E P+T  + +P      +ILL EDN+IN  VA  ++K+LG   DVV
Sbjct: 973  PTRAANAAALSMPPEKPDTPAQLQPLAQQSVRILLAEDNQINQQVALGLLKRLGIEADVV 1032

Query: 890  NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSS 949
             NG EA+ A++   Y L+LMDV MPVMDGL+ATR IR+ E                   +
Sbjct: 1033 TNGEEALAALRQHPYALVLMDVQMPVMDGLEATRCIRTRE-------------------A 1073

Query: 950  GSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            G+ N    IPIIA+TA+A++   + C   GM+ ++ KP+  + +   ++++ 
Sbjct: 1074 GTVN--PDIPIIALTAHAMAGDRQRCLQAGMNDYLPKPLAAEAVDAVIKRWL 1123



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 61/99 (61%)

Query: 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
           +S+++     V +   V DTGIGIP +    LF+K+ QV A   R++GGTGLGLAI +QL
Sbjct: 706 DSLEDSAPTRVRLHFRVADTGIGIPPDKRDRLFQKFSQVDASSTRRFGGTGLGLAISRQL 765

Query: 640 VELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPD 678
            ELMGG + V S+   GSTF F L  +  P + ++ + D
Sbjct: 766 TELMGGEIGVDSQPGQGSTFWFELELERLPEDADASNRD 804


>gi|350551693|ref|ZP_08920906.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
           700588]
 gi|349796831|gb|EGZ50614.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
           700588]
          Length = 1360

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/280 (35%), Positives = 143/280 (51%), Gaps = 52/280 (18%)

Query: 253 SLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFET--------ELFGSK 304
            L  E ILG+    +F G            ++E GL A  +  + T         L+  +
Sbjct: 531 GLAREAILGRRVTAVFPG------------IIEFGLLAVFQRVYHTGRSELYPAALYRDE 578

Query: 305 TFLIYVE-PVFS-KSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
             L + E  VF   SGE + V     D+T Q+++ E         A+Q+AKE        
Sbjct: 579 RILAWRENKVFKLNSGEIVAVY---SDLT-QIKQSEH--------ALQQAKE-------- 618

Query: 363 ITEETMRAKQM----LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLV 418
              E  RA Q+    LA MSHEIR+PL  V+ ++ +L  T L+  Q   L  +  S  ++
Sbjct: 619 ---EAERANQLKGQFLANMSHEIRTPLNAVIGLSHLLLQTPLNEGQLDYLHKIHDSARIL 675

Query: 419 LQLINDILDLSKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPI 476
           L +INDILD +K+E+G ++LE   F   E+++ +  L  AAAS QK L L   I  DVP 
Sbjct: 676 LAIINDILDYAKIEAGKLELEIQPFSLHELIQQMGTLFAAAAS-QKNLELLFQIHPDVPD 734

Query: 477 EVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
            +IGD LR+ QILTNL+ NAIKFT +G V +++   P PP
Sbjct: 735 RLIGDRLRLGQILTNLLGNAIKFTHQGTVSLRISPTPLPP 774



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 73/140 (52%), Gaps = 26/140 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +LLVEDN IN  VA SM+K+ G  + V N G+EAV+    Q  DLILMD+ MPVMDG  A
Sbjct: 1020 LLLVEDNLINQQVAVSMLKKTGAQVLVANQGLEAVNIAHTQLLDLILMDLQMPVMDGFTA 1079

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
             R I++                             R+PIIA++A  L +  +E  A GMD
Sbjct: 1080 ARQIKALH--------------------------PRLPIIALSAAVLDQDRQEVKAAGMD 1113

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
            + + KP+  ++L + L  Y 
Sbjct: 1114 AHLGKPIEPERLYQTLAHYL 1133



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 5/97 (5%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V +   V D+GIG+    +  LF+++ Q  +   R+YGG+GLGLAI +QLV+ MGGR TV
Sbjct: 777 VHLDIAVEDSGIGMSAAQVAKLFQEFSQADSSTTREYGGSGLGLAISRQLVDKMGGRFTV 836

Query: 650 TSKVHCGSTFTFILPYQVSPIEENSDD---PDDLSDM 683
            S+   GS F F L   ++  E N+ D   P+ L  M
Sbjct: 837 QSEPGKGSCFGFSLTLPIA--EPNTPDMQCPEALQGM 871


>gi|330840625|ref|XP_003292313.1| hypothetical protein DICPUDRAFT_157014 [Dictyostelium purpureum]
 gi|325077455|gb|EGC31166.1| hypothetical protein DICPUDRAFT_157014 [Dictyostelium purpureum]
          Length = 1589

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 189/413 (45%), Gaps = 57/413 (13%)

Query: 313 VFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ 372
           + S+ G+TIG      D+T++ R  E + K     A ++A+E    K+           +
Sbjct: 515 IVSRDGKTIGAVVALHDITERKRSEEVLKK-----ATEQAQEANQLKS-----------E 558

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA +SHE+ SP+  ++ M  +  +    +  +++L  ++ S  ++L+L++ ILD + +E
Sbjct: 559 FLANISHELLSPMNSIIGMVGLCLDVA-PKNLKEMLNDVVESSKILLELLHQILDFTTLE 617

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           S  +      F+ R+    + +   + + +K + ++  I  D+P ++ GD  R++QIL+N
Sbjct: 618 SNKLLFRPFPFKLRDTFNTIFKIFYSRIIEKRINVKCSIDPDIPDDLYGDQNRLKQILSN 677

Query: 492 LISNAIKFTPEGKVG--IKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTAS 549
           LI NAIKF+    +   IK+ V       K    Q+           +   H   S    
Sbjct: 678 LIDNAIKFSNSSNINNFIKITV-------KSLTNQQCDLILGGKPTGRLNSHDDYSVVYG 730

Query: 550 DQNGFHDKKHGEGYQDHKHDD-------DPGTPVSHGNSMDEDLEAT------------- 589
             + + D+ + E  ++   DD       +     ++ +S+D  LE               
Sbjct: 731 SMDYYDDEYYNENNRNQNIDDMEVGGFSEECDSTNYNDSVD--LEGNSGLGNDDQNDDED 788

Query: 590 ---VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
              + +   + D GIG+P      +F ++ QV   ++R  GG GLGL+IC+ LV+   G 
Sbjct: 789 DDFINLHFSIQDNGIGVPPEKKNFIFDRFFQVDGSYSRIQGGVGLGLSICRNLVKCFNGE 848

Query: 647 LTVTSKVHCGSTFTFILPY-QVSPIEENSDDPDDLSDMADQDSVTDDVTAGFF 698
           +   S+   GSTF F++   ++ P+ +    P + S +  Q + + + +  FF
Sbjct: 849 IWFESEPSFGSTFHFLIRIKKLEPLVQ----PSNPSAVPSQTTNSPNSSGKFF 897



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 27/143 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV-----HAVQCQNYDLILMDVCMPV 915
            K+L+ EDN +N  + K+++ + G  I +  +G +A+       V+   YD ILMD+ MP 
Sbjct: 1437 KVLVAEDNTMNQKLIKTLLTKKGFDITIAKDGKQALDFYHESKVKSTLYDCILMDIQMPN 1496

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            ++GL+AT  IR  E       A E G                IPIIA+TA+A+    E+ 
Sbjct: 1497 LNGLEATSAIREIE-------ANEGG---------------HIPIIAVTAHAMKGDKEKF 1534

Query: 976  FANGMDSFVSKPVTFQKLKECLE 998
              +G+D +V+KP+  + L E + 
Sbjct: 1535 LESGVDDYVTKPINPKLLYEVIN 1557


>gi|316935933|ref|YP_004110915.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315603647|gb|ADU46182.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 873

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/210 (37%), Positives = 115/210 (54%), Gaps = 25/210 (11%)

Query: 304 KTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHI 363
           + + +  +PVF   GE  G   +G DVT++ R  +  A+        +AK +        
Sbjct: 330 RLWSLTAKPVFDAKGEFAGYRGVGRDVTERWRAEQAEAE-------NRAKSS-------- 374

Query: 364 TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
                     LA MSHEIR+P+ GV+ +A  L  TKLD EQ+Q +  +  SGD +L+++N
Sbjct: 375 ---------FLAMMSHEIRTPMNGVLGLANSLLETKLDAEQQQAVTTIRDSGDDLLRILN 425

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDV 482
           DILDLSK+E+G ++ E A F P  +V+ V       ++ K + L+ DI   +P  + GD 
Sbjct: 426 DILDLSKLEAGRLEFEQADFSPATLVESVRAIIEPEIRGKGIELKIDIDPRLPPSLSGDA 485

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            RIRQ+L NL SNA+KFT  G + I L  V
Sbjct: 486 ARIRQVLLNLASNAVKFTERGSIAIVLTCV 515



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 23/128 (17%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           ++L+ ED+  N MV   M+++    I VV++G +AV A   + +D++LMDV MP MDGL 
Sbjct: 629 RVLIAEDDATNQMVVTKMLQEFAAEITVVSDGTDAVQAASEREFDVVLMDVRMPNMDGLA 688

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           AT+ IR                       G  N   ++PIIA+TANA  +  + C   GM
Sbjct: 689 ATQAIR-----------------------GKGNALAKLPIIALTANAFPDDVKVCREAGM 725

Query: 981 DSFVSKPV 988
           + F++KP+
Sbjct: 726 NDFLAKPL 733



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +   V DTGIGI  + + +LF  + Q      R++GGTGLGLAI +++VE MGG + VTS
Sbjct: 524 VEWQVTDTGIGISPDRVGSLFTDFAQADVSINRRFGGTGLGLAISRRIVEQMGGDIAVTS 583

Query: 652 KVHCGSTFTFI--LPYQVSPIEENSDD---PDDL 680
           +   GSTF F   LP+  + + ++  D    DDL
Sbjct: 584 REGEGSTFRFSLDLPWSNAWVADHRLDRLGSDDL 617


>gi|395798551|ref|ZP_10477835.1| putative two-component system sensor kinase [Pseudomonas sp. Ag1]
 gi|395337286|gb|EJF69143.1| putative two-component system sensor kinase [Pseudomonas sp. Ag1]
          Length = 965

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 127/233 (54%), Gaps = 31/233 (13%)

Query: 329 DVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGV 388
           D+T  V + + + + R+E     A E    KT+            LATMSHEIR+PL GV
Sbjct: 461 DITRHVDEAQLLTQARQE-----ATEANEAKTV-----------FLATMSHEIRTPLYGV 504

Query: 389 VSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448
           +   E+++ T +   QR  L ++  S  ++ QLI+++LD+SK+ESG M +EAA F P ++
Sbjct: 505 LGNLELMALTDMSERQRHYLEIIQGSSTVLFQLISNVLDVSKIESGQMAVEAAPFSPGQL 564

Query: 449 V-KHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           V + VL  +A +  K L ++ +I   +P +++GD  RIRQ+L NL+ NAIKFT  G+V +
Sbjct: 565 VAESVLAFSATARNKGLQIDAEIDPLLPPQLLGDAGRIRQVLHNLLGNAIKFTDSGRVRL 624

Query: 508 KLYVVPEPPFAKEGLKQKSKAYQSATDA-------VKEEKHQPKSQTASDQNG 553
           +L V       ++ L  K       TD          ++  +P  Q A DQ+G
Sbjct: 625 RLMV-------QQLLDDKVTLQWQVTDTGVGIPEKALDQLFKPFYQVAGDQDG 670



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 28/156 (17%)

Query: 844 PSSSSAEVPETKPKP--KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
           PS+    +P     P    ++L+ EDN ++  V +  ++ LG    V  +G  A+     
Sbjct: 717 PSAEQPSMPPCLDAPCLNVRVLVAEDNPVSQAVLQEQLEALGAHPTVARDGEHALQIWGS 776

Query: 902 QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII 961
           Q +DL++ D+ MP ++G    R +R            E G++              +PII
Sbjct: 777 QPFDLVITDINMPRLNGYDLARALR------------EQGVQ--------------VPII 810

Query: 962 AMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
            +TANAL E  E C A GM+++V KP++   L++ L
Sbjct: 811 GVTANALREEGERCLAVGMNAWVVKPLSLSMLRQAL 846



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 586 LEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
           L+  V ++  V DTG+GIPE AL  LF+ + QV+ D  +   G GLGL+IC +L ELMGG
Sbjct: 632 LDDKVTLQWQVTDTGVGIPEKALDQLFKPFYQVAGD--QDGNGAGLGLSICSRLSELMGG 689

Query: 646 RLTVTSKVHCGSTFTFILPYQV 667
            + V S+   GS+F+  +   V
Sbjct: 690 SMRVVSEPGLGSSFSLFITLPV 711


>gi|334131211|ref|ZP_08504977.1| Two-component hybrid sensor and regulator [Methyloversatilis
           universalis FAM5]
 gi|333443841|gb|EGK71802.1| Two-component hybrid sensor and regulator [Methyloversatilis
           universalis FAM5]
          Length = 758

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 104/169 (61%), Gaps = 2/169 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L E+I   +  E EL       E+  RAK   LATMSHEIR+P+ G++ M +++ +  L 
Sbjct: 362 LSEDITAARTAENELRSAKEEAEKASRAKAAFLATMSHEIRTPMNGIIGMTDVVLDGPLS 421

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF-RPREVVKHVLQTAAASL 460
            EQR+ LG + SS D ++ ++NDILD SKV++G M LE+  F  P      +   +A + 
Sbjct: 422 DEQRESLGWVKSSADSLMGILNDILDYSKVDAGQMTLESVDFDLPALFADTLALFSAQAS 481

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            K + L+  +   +P++V+GD LR+RQ+L+NL+SNAIKFT  G V + L
Sbjct: 482 AKGIALDSRLEPGLPLQVMGDPLRVRQVLSNLVSNAIKFTERGGVTVTL 530



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 22/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ ED  +N ++ K ++ + G  I    +G +AV A + +++DL+LMDV MPVMDGL+A
Sbjct: 637  VLIAEDTPVNQVLLKRLLSRHGVRITQATDGAQAVEACRGRHFDLVLMDVQMPVMDGLEA 696

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR+ +D                       +++R PIIA+TANAL E  + C   GMD
Sbjct: 697  TRHIRALDDV----------------------YWQRAPIIAITANALEEDRQRCREAGMD 734

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             F+SKP   ++L E L ++ 
Sbjct: 735  DFISKPFHARQLIETLVRHL 754



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI  + L  +F  + Q  +   R YGGTGLGL+I  +LV+LM GR++V S+   
Sbjct: 542 VRDTGIGIAADKLGQVFAPFSQADSSTTRNYGGTGLGLSIVSRLVDLMKGRISVQSEPGQ 601

Query: 656 GSTFTFILPYQVSPIEENSD 675
           G+ F   LP    P   N D
Sbjct: 602 GTLFQVELPL---PAARNRD 618


>gi|359688370|ref|ZP_09258371.1| multi-sensor hybrid histidine kinase [Leptospira licerasiae serovar
           Varillal str. MMD0835]
 gi|418748435|ref|ZP_13304727.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
 gi|418756108|ref|ZP_13312296.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
           str. VAR 010]
 gi|384115779|gb|EIE02036.1| PAS domain S-box protein [Leptospira licerasiae serovar Varillal
           str. VAR 010]
 gi|404275504|gb|EJZ42818.1| PAS domain S-box protein [Leptospira licerasiae str. MMD4847]
          Length = 864

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 149/284 (52%), Gaps = 23/284 (8%)

Query: 227 VLQNAPVVMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEK 286
           +L N P      D E R  F    F +   E+   + D+ + +  G +++Q F   ++ K
Sbjct: 218 ILDNLPSAFCMMDLEGRTLFHNQVFANRFLENKDKRKDMALENLFGSEKAQ-FISTIIAK 276

Query: 287 GLPAKREITFETELFGS---KTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKL 343
            L  +  + FE +L  S   KTF   + P+    GE   V                   L
Sbjct: 277 SLEKQGPLDFELDLVVSEEEKTFYCVIVPLVDLEGEVYSV-----------------CGL 319

Query: 344 REEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDR 402
             +I+V+K  E +L K     E+  RAK + LA MSHEIR+P+ GV+ M E+L ++ L+ 
Sbjct: 320 FTDISVRKNYEHDLKKAKEEAEKANRAKSEFLAMMSHEIRTPMNGVIGMTELLIDSNLNT 379

Query: 403 EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQ 461
           EQ++   ++  SG+ +L +INDILD SK+ESG + LE  +F   E ++ VL    + + Q
Sbjct: 380 EQKEYAEIIQKSGESLLNIINDILDYSKIESGTLSLEIREFSVIETIEEVLDLFRSRAAQ 439

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           K + L   +  +VP  ++ D LR++QIL NLI NA+KFT +G++
Sbjct: 440 KQIDLVYYLDPNVPDRILCDSLRLKQILINLIGNALKFTEQGEI 483



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 23/133 (17%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           KI++ EDN+IN  +AK ++++LG+   +V NG EA+ A++ +  +LI MDV MP MDGL+
Sbjct: 738 KIMVAEDNEINQTLAKRIIQKLGYEPLIVPNGKEALIALREKKINLIFMDVHMPEMDGLQ 797

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           AT++IR+      W   ++                    IIAMTA A+    + C   GM
Sbjct: 798 ATQVIRN-----TWSVESQP------------------YIIAMTAAAMQGDRDLCLRAGM 834

Query: 981 DSFVSKPVTFQKL 993
           + ++SKP+ F++L
Sbjct: 835 NDYISKPIVFEEL 847



 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 586 LEATVW-IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMG 644
           LE  ++ I   + DTGIGIP      LF+ + QV     RKYGGTGLGL+I  +L+E+MG
Sbjct: 492 LEGKLYTILFSIRDTGIGIPSEKQKELFQPFYQVDTSSTRKYGGTGLGLSISSRLIEMMG 551

Query: 645 GRLTVTSKVHCGSTFTF 661
           G + V S+++ G+TF+F
Sbjct: 552 GIIWVESELNVGTTFSF 568


>gi|94265110|ref|ZP_01288875.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454397|gb|EAT04695.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 699

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/211 (39%), Positives = 122/211 (57%), Gaps = 21/211 (9%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           V P+ S SG  IG  ++     D  R+RE  + L        AKE          E  +R
Sbjct: 172 VAPIASFSG-IIGAVFV---FRDTRREREIQSHL------LAAKEQ--------AEGALR 213

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+PLT V+ MA++L  T+LD +QRQ +    ++G+ +L LIN ILDL
Sbjct: 214 AKGEFLAGMSHEIRTPLTAVLGMADLLDKTRLDSQQRQYVAASRAAGENLLDLINGILDL 273

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
           SK+E+G +++E+ +F   ++V+   +     + Q+ L      +   P  V+GD  RIRQ
Sbjct: 274 SKIEAGRLEVESVEFDLDQLVRQTCEIMNLRARQQGLEFVHHSSCAGPCLVMGDPTRIRQ 333

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVVP-EPPF 517
           +L NLI NAIKFT EG+V ++L  +P  PP+
Sbjct: 334 VLVNLIGNAIKFTEEGRVMVELACLPAAPPY 364



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 49/74 (66%)

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
           + RC V DTGIGIP      +F  + Q  +   R+YGGTGLGLAI ++LV +MGG++++ 
Sbjct: 368 FFRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLV 427

Query: 651 SKVHCGSTFTFILP 664
           S+   GSTFT  +P
Sbjct: 428 SREGGGSTFTMEIP 441



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 23/153 (15%)

Query: 836 KPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA 895
           KP R +  P+    E    +      ILL ED+  N ++ ++ ++  GH +++  +G EA
Sbjct: 451 KPSRAASLPAGP--EPAGDEAGAGMDILLAEDSPDNRLLFQAYLQDTGHRLEMARDGAEA 508

Query: 896 VHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955
           V   +  +Y L+LMD+ MPV+DG +ATR IR +E    W        +   P        
Sbjct: 509 VAKYRAGHYHLVLMDMQMPVVDGYEATRQIREWE----W--------QHGRP-------- 548

Query: 956 KRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
            R PI+A+TA+A  E        G D  + KP+
Sbjct: 549 -RTPILALTAHAFQEDIARSREVGCDGHLVKPI 580


>gi|21229958|ref|NP_635875.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
 gi|66766834|ref|YP_241596.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. 8004]
 gi|188989907|ref|YP_001901917.1| two-component system sensory histidine kinase [Xanthomonas campestris
            pv. campestris str. B100]
 gi|21111470|gb|AAM39799.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
 gi|66572166|gb|AAY47576.1| two-component system sensor protein [Xanthomonas campestris pv.
            campestris str. 8004]
 gi|167731667|emb|CAP49845.1| two-component system sensory histidine kinase [Xanthomonas campestris
            pv. campestris]
          Length = 767

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 27/195 (13%)

Query: 813  EANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP-----KILLVED 867
            +AN  ++     +E  +   +  +P + S +P+ +SA +PE  P P       +ILLVED
Sbjct: 446  QANATLVPRQSPDETLRALVLPPEP-KPSVAPTLASAMIPEPLPPPVAHARDVRILLVED 504

Query: 868  NKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRS 927
            N +N++VA+ ++  LG   D   +G  A+ +++   YD++ MD  MPV+DG  ATR  R+
Sbjct: 505  NPVNLLVAQKLLGVLGFEADTATDGEAALSSMESTRYDMVFMDCQMPVLDGYAATRRWRA 564

Query: 928  FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987
             E                     + +  + IPI+AMTANA++   E C A GMD ++SKP
Sbjct: 565  ME---------------------TESGGRPIPIVAMTANAMAGDRERCLAAGMDDYLSKP 603

Query: 988  VTFQKLKECLEQYFP 1002
            V  ++L  CL+++ P
Sbjct: 604  VAREQLNACLQRWLP 618



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 100/172 (58%), Gaps = 12/172 (6%)

Query: 350 QKAKETELNKTIHITEETMRAKQ-----------MLATMSHEIRSPLTGVVSMAEILSNT 398
           Q   + EL +   + +E +RAKQ            LATMSHEIR+PL G++ M E++S  
Sbjct: 80  QARMQQELQRHGELEQELLRAKQAAEAASLAKGEFLATMSHEIRTPLNGIIPMLELISRG 139

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
           +L  +QR +L     S   +L++++DILD SK+E+  ++LE   F  RE++  V Q    
Sbjct: 140 QLSLDQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVAQLMQR 199

Query: 459 SLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           + + K L L  DI   V + V GD +R+RQ+L NLI NAIKFT  G V I+L
Sbjct: 200 TAEGKQLRLGLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQL 251



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 49/74 (66%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTGIGI  +    LFR + Q  A   R YGGTGLGLAICK++++LMGGR+ V S
Sbjct: 263 LRFQVRDTGIGIAADQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVES 322

Query: 652 KVHCGSTFTFILPY 665
           +   G+TF F +P 
Sbjct: 323 EPGRGATFWFEIPL 336


>gi|189423630|ref|YP_001950807.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419889|gb|ACD94287.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 704

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/184 (41%), Positives = 109/184 (59%), Gaps = 2/184 (1%)

Query: 331 TDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVV 389
           T  V  + +   L  +I+ +K  E EL +  +  E   RAK + LA MSHEIR+P+ GV+
Sbjct: 294 TGPVEDQPRFVVLSRDISDRKQHEKELLEARYAAEAASRAKSEFLANMSHEIRTPMNGVI 353

Query: 390 SMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449
            MA +L  T+L  EQ Q L  + +S + ++ LI DILDLS++E+G M LE   F  R  +
Sbjct: 354 GMAHLLGTTELSPEQEQYLENIENSANSLITLIGDILDLSRIEAGRMLLENVDFSLRRCI 413

Query: 450 KHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
           + +L +    + QK + +  +IA+DVP  + GD LR RQIL NL+ NAIKFT  G V I 
Sbjct: 414 QELLGSQQFQINQKKISIHTEIAEDVPDLLRGDQLRTRQILLNLLGNAIKFTEHGGVTIT 473

Query: 509 LYVV 512
             +V
Sbjct: 474 AQLV 477



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E  V I   V DTGIG+P + L  +F  + Q      R+YGG+GLGLAIC++L ELMGGR
Sbjct: 481 ENRVLIHLAVSDTGIGMPPDLLERIFAPFEQADNSTTRRYGGSGLGLAICRRLAELMGGR 540

Query: 647 LTVTSKVHCGSTF----TFILPYQVSPIEE-NSDDPDDL 680
           +   S    GSTF     F+LP Q    +E N +  DD+
Sbjct: 541 IWAESGAEGGSTFHVELPFLLPEQTDRQQERNCEQADDV 579



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 25/156 (16%)

Query: 833 MQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNG 892
           + E+ DR  +     + +V + +P    ++LL EDN ++      ++ ++GH + VV +G
Sbjct: 561 LPEQTDRQQERNCEQADDVYQDRPL---ELLLAEDNLVSAQFVHKVLSRMGHQVTVVGDG 617

Query: 893 VEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
            +A+  +  +++D ILMD+ MPVM G  A R+IR  E+                      
Sbjct: 618 RQALDCLADRSFDCILMDIQMPVMGGDAAVRIIREQENQ-------------------RG 658

Query: 953 NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
            H   IPIIA+TA+ + E  E     G D+ V+KPV
Sbjct: 659 GH---IPIIALTAHDMDEERERLLRQGFDAHVAKPV 691


>gi|288960032|ref|YP_003450372.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912340|dbj|BAI73828.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 751

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 20/225 (8%)

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH----- 362
           + + PV    G    +     DVTD  R +E++    E++    A+   L + +      
Sbjct: 162 LSLRPVPGPDGRARWITATCADVTDSRRSQEELRAAEEQLTRLAAETFALAEKLDGAREE 221

Query: 363 ------ITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSG 415
                   E   RAK + LA MSHE+R+P+T V+ M ++L  T L+ +Q  L+  + SS 
Sbjct: 222 AEDARVAAENASRAKSRFLAMMSHELRTPMTAVIGMGDLLLGTGLNEQQIALVKTLRSSA 281

Query: 416 DLVLQLINDILDLSKVESGVMKLEAAKFR-PR---EVVKHVLQTAAASLQKILMLEGDIA 471
           D ++ ++ND+LD SK+E+G + LE   F  PR   +VV+  L  AAA   K L L   IA
Sbjct: 282 DTLMTILNDVLDFSKIEAGQLTLEEIDFSLPRLVEDVVQLFLVRAAA---KGLSLSASIA 338

Query: 472 DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
           ++ P  + GD  R+RQ+L NL+SNAIKFT  G + I ++  P+PP
Sbjct: 339 ENTPRHIRGDPTRLRQVLYNLVSNAIKFTDRGAIEIAVW-SPDPP 382



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 9/92 (9%)

Query: 570 DDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGT 629
           D P +P+S          + + +R +V D GIG+  +    LF  ++Q  A  +RKYGGT
Sbjct: 380 DPPASPLS---------ASPMTLRFEVQDDGIGMTADQRARLFDAFVQADASTSRKYGGT 430

Query: 630 GLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           GLGL+ICK+LVE MGG ++V S    GSTF F
Sbjct: 431 GLGLSICKRLVEAMGGEISVASTPGRGSTFRF 462



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 23/137 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           ++LL EDN IN M+  +MM + GH ID V +G  A+ A+   +YD +++D+ MPV+DG  
Sbjct: 497 RLLLAEDNDINRMLVVAMMSRAGHRIDAVTDGRAALDAIAAADYDALILDMEMPVLDGRA 556

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
             R IR  +                           RIPI+ ++A+A+ E  +   A G+
Sbjct: 557 TARAIRRMD-----------------------GPVARIPIVGLSADAMPEHRDGHMAAGL 593

Query: 981 DSFVSKPVTFQKLKECL 997
           D++++KP+ + +L   L
Sbjct: 594 DAYLTKPIDWDQLNAVL 610


>gi|70730557|ref|YP_260298.1| sensor histidine kinase/response regulator [Pseudomonas protegens
           Pf-5]
 gi|68344856|gb|AAY92462.1| sensor histidine kinase/response regulator [Pseudomonas protegens
           Pf-5]
          Length = 945

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 107/166 (64%), Gaps = 2/166 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L +   + +    AK + LATMSHEIR+PL GV+   E+LS T+LD +Q
Sbjct: 437 DISARKQIEAALEEAKRLADTANEAKTLFLATMSHEIRTPLYGVLGTLELLSRTQLDNQQ 496

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
           +  L  +  S   +LQLI D+LD+SK+E+G + LE ++F   ++V  ++Q  AA+ Q K 
Sbjct: 497 KDYLQAIEGSSGTLLQLICDVLDVSKIEAGQLALELSEFSSLDLVHEIIQGYAAAAQAKG 556

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L     +   +P  ++GDV RIRQIL+NL++NA+KFT  G++ +++
Sbjct: 557 LQFYACVDPQLPEILLGDVTRIRQILSNLLNNAVKFTDTGRIVLRV 602



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 26/139 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN IN ++ K  +++LG S+++ +NG EA+   +   ++++L DV MP ++G + 
Sbjct: 825  VLVAEDNVINQLILKDQLEELGCSVELASNGEEALCIWKAGRFNVVLTDVNMPKLNGYE- 883

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
                                + Q +   G S     IPII  TANA+    E C A GM+
Sbjct: 884  --------------------LAQELRRQGCS-----IPIIGATANAMRGEEELCLAAGMN 918

Query: 982  SFVSKPVTFQKLKECLEQY 1000
              + KP   + L   L  Y
Sbjct: 919  HCLVKPFALRALFNYLAPY 937



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTG GI ++    +F  + Q   +      GTGLGL IC++L +LM G + + S
Sbjct: 614 ILWQVSDTGRGIAQDDQTLIFEPFYQTEGN-TNVIAGTGLGLPICQRLTQLMNGNIRMVS 672

Query: 652 KVHCGSTFTFILPYQVSPIEENS 674
           ++  GS+FT  LP + S ++ ++
Sbjct: 673 ELGLGSSFTLTLPLEASAVQGDT 695


>gi|397693762|ref|YP_006531642.1| histidine kinase [Pseudomonas putida DOT-T1E]
 gi|397330492|gb|AFO46851.1| histidine kinase [Pseudomonas putida DOT-T1E]
          Length = 935

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 94/138 (68%), Gaps = 1/138 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LATMSHEIR+PL GV+   E+LS T LD +QR  L  +  S   +LQLI D+LD+SK+
Sbjct: 461 QFLATMSHEIRTPLYGVLGTLELLSRTVLDAQQRDYLRAIEGSSSTLLQLICDVLDVSKI 520

Query: 432 ESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + LE ++F   ++V+ V+Q  +AA+  K L L   +   +P  +IGDV RIRQIL 
Sbjct: 521 EAGQLALELSEFSAPDLVREVVQGYSAAARSKGLQLYSCLDPRLPEHLIGDVNRIRQILN 580

Query: 491 NLISNAIKFTPEGKVGIK 508
           NL+SNA+KFT  G+V ++
Sbjct: 581 NLLSNAVKFTDCGRVVLR 598



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 27/157 (17%)

Query: 844  PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
            P   +A  P T+P     +L+ EDN IN ++ +  +++LG S+ +VN+G +A+   Q ++
Sbjct: 802  PRDPAAPAPLTEPL-GLHVLVAEDNVINQLILRDQLEELGCSVTLVNDGEQALQTWQREH 860

Query: 904  YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
            +DL+L DV MP  +G + TR +R    T                           PI+  
Sbjct: 861  FDLLLTDVNMPGTNGYELTRALRQLGCTR--------------------------PIVGA 894

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            TANAL    E C A GMD  + KP   Q L  CL  Y
Sbjct: 895  TANALRGEEELCLAAGMDRCLIKPFNLQVLFNCLAPY 931



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 2/98 (2%)

Query: 571 DPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
           D G  V     ++ D E +  +   V DTG GI E   P +F  + Q    H++   GTG
Sbjct: 591 DCGRVVLRARLLNRDGERSC-LLWQVSDTGKGIAEQDQPFIFEPFYQTEG-HSQVIPGTG 648

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           LGL IC++L +LM G+L + S++  GS+F+  LP +V+
Sbjct: 649 LGLPICQRLTQLMNGQLRLVSELGLGSSFSLTLPLEVA 686


>gi|398919997|ref|ZP_10659035.1| signal transduction histidine kinase [Pseudomonas sp. GM49]
 gi|398168731|gb|EJM56735.1| signal transduction histidine kinase [Pseudomonas sp. GM49]
          Length = 937

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 106/166 (63%), Gaps = 2/166 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ ++  E  L +     + +  AK + LATMSHEIR+PL GV+   E+L+ T+LD  Q
Sbjct: 429 DISARRQIEAALEQARQSADASNEAKTLFLATMSHEIRTPLYGVLGTLELLARTQLDTRQ 488

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
           +  L  +  S   +LQLI D+LD+SK+E+G + LE ++F P  + + V+Q  AA+ Q K 
Sbjct: 489 KSYLRAIEGSSATLLQLICDVLDVSKIEAGQLALELSEFCPTTLAQEVVQGYAAAAQSKG 548

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L L   +   +P  ++GDV R+RQIL NL+SNA+KFT  G+V +++
Sbjct: 549 LQLYACLDPQLPDRLMGDVSRVRQILNNLLSNAVKFTDSGRVVLRV 594



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 29/167 (17%)

Query: 834  QEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV 893
            Q +  +I+Q P       P      +  IL+ EDN IN ++ +  +++LG ++ + ++G 
Sbjct: 792  QAQGGQIAQHPEQRE---PHALLTLRLHILVAEDNVINQLILRDQLEELGCTVALASDGE 848

Query: 894  EAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
            EA+       +D++L DV MP ++G      +R                       G + 
Sbjct: 849  EALSLWHEGTFDIVLTDVNMPRLNGYDLAETLR---------------------RQGCTT 887

Query: 954  HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                 PII  TANA+      C A GM+  + KP T + L   L  Y
Sbjct: 888  -----PIIGATANAMRGEDALCLAAGMNHCLVKPFTLRALFAVLAPY 929



 Score = 48.5 bits (114), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V ++  V DTG GI  +    +F  + Q   +      GTGLGL IC +L  LM G L +
Sbjct: 604 VCLQWQVSDTGKGIAHDDQAFIFEPFYQTEGN-TNVVVGTGLGLPICLRLTHLMNGTLRM 662

Query: 650 TSKVHCGSTFTFILPYQ 666
            S+   GS+F+  +P Q
Sbjct: 663 VSEPGLGSSFSLCVPLQ 679


>gi|430741730|ref|YP_007200859.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
           18658]
 gi|430013450|gb|AGA25164.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
           18658]
          Length = 919

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/186 (42%), Positives = 114/186 (61%), Gaps = 15/186 (8%)

Query: 334 VRKRE-KMAKLREEIAVQKAKETELNKTI-----------HITEETMRAK-QMLATMSHE 380
           VR+ E + A++R E A Q A+ TEL K +              E   RAK + LA +SHE
Sbjct: 201 VRQAELEAARVRIEAAGQ-ARATELEKRVADRTAELVYAKEAAEAASRAKSEFLANVSHE 259

Query: 381 IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
           IR+P+ G++ M E++ +T L  EQ++ L V+ SS D +L +INDILD SK+E+G ++L+ 
Sbjct: 260 IRTPMNGIIGMTELVLDTALSTEQQEYLEVVASSADSLLTVINDILDFSKIEAGKLELDR 319

Query: 441 AKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKF 499
             F  R+ +   L+  A  + QK L L  DIA +VP  +IGD  R+RQI+ NL+ NAIKF
Sbjct: 320 CPFDLRDCLGDALRPLAMRAHQKGLELAFDIAHNVPDALIGDGGRLRQIVVNLVGNAIKF 379

Query: 500 TPEGKV 505
           T  G+V
Sbjct: 380 TDRGEV 385



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 28/168 (16%)

Query: 838 DRISQSPSSSSAEVPETK-----PKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNN 891
           D +S +PSS +A   ++      P P+  ++L+ EDN +N  +A  ++ +LGH   VV +
Sbjct: 614 DILSDTPSSKAAAALDSSGIASSPAPRRLRVLVAEDNPVNQTLAIRLLAKLGHDSVVVGD 673

Query: 892 GVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951
           G +A++ ++   +DL+LMD+ MP +DGL+AT L+R  E       A E G          
Sbjct: 674 GRQALNRLEKGGFDLVLMDLQMPNLDGLEATSLLREHE-------AREGG---------- 716

Query: 952 SNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
                 +P+IAMTA+A+    E C A G D +VSKP+  + L   +E+
Sbjct: 717 -----HMPVIAMTAHAMRGDRERCLAAGCDGYVSKPMRSRDLAGAIEE 759



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 49/72 (68%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V +R +V DTGIGIP +    +F  + Q      RK+GGTGLGL+I  +LVE+MGG +++
Sbjct: 399 VGLRIEVLDTGIGIPAHRHKAIFAPFEQADGSMTRKFGGTGLGLSISCRLVEMMGGEISL 458

Query: 650 TSKVHCGSTFTF 661
            S++  GSTF+F
Sbjct: 459 ESRIGEGSTFSF 470


>gi|257094360|ref|YP_003168001.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046884|gb|ACV36072.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 797

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 109/176 (61%), Gaps = 10/176 (5%)

Query: 342 KLREEIAVQKAKETELNKTIHITEE-----TMRAKQMLATMSHEIRSPLTGVVSMAEILS 396
           +LRE  A  + + T     + + +E      +   + LA MSHEIR+P+ GV+ MA++L 
Sbjct: 237 QLREHRATLEDQVTSRTAQLQLAKEQAETANLAKSRFLANMSHEIRTPMNGVIGMADLLL 296

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-- 454
           +T L  +QR+    +  S + +L L+N+ILDLSK+ESG + +E   F PR +V+ V+Q  
Sbjct: 297 DTGLSEQQRRHAETLRLSAESLLHLLNNILDLSKIESGRLDIELTPFDPRRLVEEVMQPF 356

Query: 455 TAAASLQKILMLEGD-IADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
              AS + +L+  GD I+ D+P  VIGD  R++QIL+NL+SNA+KFT  G + I L
Sbjct: 357 VEMASAKGVLL--GDVISPDIPPVVIGDPYRVKQILSNLLSNAVKFTEHGSIFISL 410



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 24/168 (14%)

Query: 834  QEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV 893
            Q  P  +   P+ +    P    +   ++LLVEDN++N  ++ ++++ LG ++D  ++G 
Sbjct: 503  QRVPIHLGPPPAHTQ---PANGRRMTGRVLLVEDNEVNREISGAILESLGCAVDFAHDGE 559

Query: 894  EAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
            +AV A +  +Y +ILMD  MPV+DG  ATR IR+ E      AA  A             
Sbjct: 560  QAVSARRSGSYQVILMDCQMPVLDGFAATRQIRAEE-----RAAGRA------------- 601

Query: 954  HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                +PIIA+TANAL+   E C   GM+ +++KP+   +L   L +Y 
Sbjct: 602  ---EVPIIALTANALAGDRELCLNAGMNDYLAKPINRAQLTAALARYL 646



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG+GI   A   LF  + Q      RK+GGTGLGL I ++L + M G +   S    
Sbjct: 436 VTDTGVGISRAASEKLFAPFTQADDSTTRKFGGTGLGLVIIRELAQRMDGHVGFESAEGL 495

Query: 656 GSTFTF--ILPYQVSP 669
           GSTF F   +P  + P
Sbjct: 496 GSTFWFRQRVPIHLGP 511


>gi|427723479|ref|YP_007070756.1| response regulator receiver modulated CheB methylesterase
            [Leptolyngbya sp. PCC 7376]
 gi|427355199|gb|AFY37922.1| response regulator receiver modulated CheB methylesterase
            [Leptolyngbya sp. PCC 7376]
          Length = 1250

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 160/297 (53%), Gaps = 21/297 (7%)

Query: 217  LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHE-EDILGKTDVEIFSGAGVKE 275
            L++ ++     +  + + +  QD +LRY ++YN  P++ + +DILG+ D +++S A   +
Sbjct: 731  LRKQESLFRLTIDQSDITVFTQDLDLRYTWVYN--PTIFKAKDILGRLDSDLYSEAIATQ 788

Query: 276  SQDFKREVL--EKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQ 333
                K+++L  E+G   +  I  +      + F + +EP+       IG+  +  D+T +
Sbjct: 789  LITHKQKILDSEQGDSLQIAINIDG---CQRHFDLRLEPLMDSENRVIGLAGVSYDITAE 845

Query: 334  VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMA 392
              +++K+A+       Q    TE+++    T+    AK + LA MSHEIR+P+T ++   
Sbjct: 846  KEQQKKLAQ-------QNVTLTEISQK---TQAANIAKDEFLANMSHEIRTPMTAILGFT 895

Query: 393  EILSNTKLDR-EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR-PREVVK 450
            E+L     D  +  + L ++ SS D +L ++NDILDLSK+E+G ++L+   F  P+    
Sbjct: 896  ELLQEELKDHPDTAEYLQIIYSSADSLLVILNDILDLSKIEAGKLRLKYETFSLPQLFAD 955

Query: 451  HVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
                    + QK L     + +  P  V+ D +R+RQIL NLISNAIKFT +G V +
Sbjct: 956  MEKMFIPKTNQKGLEFSMVVEESTPEFVVFDEVRLRQILFNLISNAIKFTNQGSVQV 1012



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            ++ ++ DTGIGIP +    +F  + Q      R YGGTGLGL I  +L E++ G + + S
Sbjct: 1026 LKLEIADTGIGIPVSDQERIFEAFTQREGQSTRNYGGTGLGLHITSRLTEMLNGIICLDS 1085

Query: 652  KVHCGSTFTFIL 663
            +V  GS FT + 
Sbjct: 1086 EVDRGSKFTLVF 1097



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 26/144 (18%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            P+ KIL V+DN  N ++ KS+  Q  HS     +G E +        D+IL+D+ MP+++
Sbjct: 1130 PQIKILCVDDNITNRLLLKSIFDQTKHSFFEAEDGQEGITMALKHKPDVILLDLLMPILN 1189

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +A   ++   +                         K IPII +TA+     AE    
Sbjct: 1190 GAEAIARMKKMSE------------------------LKDIPIIILTAHTGDIPAE--VT 1223

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
              +  F+ KP   + + + L + F
Sbjct: 1224 PHISGFIRKPFKSKSILKILRKIF 1247


>gi|452851666|ref|YP_007493350.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio piezophilus]
 gi|451895320|emb|CCH48199.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio piezophilus]
          Length = 1112

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 103/165 (62%), Gaps = 2/165 (1%)

Query: 350 QKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
           +K    +L +   + E   RAK + LA MSHEIR+PL G+  M +++  T+L  EQR  +
Sbjct: 712 RKISGEQLVQAKEVAETASRAKSEFLANMSHEIRTPLNGIFGMLQLVGETELTEEQRDFV 771

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLE 467
              ++SG  +L++IND+LD SK+E+G++ LE   F  R +V  VL      + +K L ++
Sbjct: 772 STALTSGRSLLRVINDVLDFSKMEAGMLALEEEPFDFRNMVGSVLDNFTIQAAEKGLNMK 831

Query: 468 GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
             I D VP  ++GD  RIRQIL NL+ NA+KFTP G+V ++ +V+
Sbjct: 832 VAIEDSVPDTLLGDEGRIRQILFNLVGNAVKFTPRGEVKVESWVL 876



 Score = 92.8 bits (229), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 21/159 (13%)

Query: 841  SQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            ++ PS +  EVP +       +LLVED ++N +  K  +++LG ++    +G EA+  ++
Sbjct: 963  AEFPSVNGKEVPPSVHLAPLDVLLVEDERVNRLSVKKHLEKLGCTVSEAEDGGEALDLLR 1022

Query: 901  CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
               YDL+LMD+ MP MDG+ ATR IR     G+                       RIPI
Sbjct: 1023 WNEYDLVLMDIQMPNMDGITATRAIRDDSQLGS---------------------KARIPI 1061

Query: 961  IAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            +A+TA+A+    E   A GMD +++KPV F  L   L +
Sbjct: 1062 VALTAHAMKGDKERFLAAGMDDYIAKPVEFVDLVGVLAR 1100



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGIP++ + ++F  + QV   + RKYGGTGLGL I K+LV LMGG + V S  + 
Sbjct: 891 VSDSGIGIPDDMIDSVFMAFSQVDGSYTRKYGGTGLGLGIVKRLVNLMGGEIAVESDENG 950

Query: 656 GSTFTFI 662
            +   F+
Sbjct: 951 TTIHLFV 957


>gi|20198916|gb|AAK54088.2|AF362369_1 histidine kinase DhkG [Dictyostelium discoideum]
          Length = 3432

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 164/375 (43%), Gaps = 42/375 (11%)

Query: 308  IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLR---EEIAVQKAKETELNKTIHIT 364
            I V P+  + G  + + Y+  + +  +   EK+  L     +IA+  +      K   + 
Sbjct: 2410 ILVLPIVYQ-GNLVSILYLENNFSTGIFSNEKLEILNLISSQIAISFSNARLFIKVNQLA 2468

Query: 365  EETMRAKQ-----------MLATMSHEIRSPLTGVVSMAEILS--NTKLDREQRQLLGVM 411
             +   AK+            ++ MSHE+R+PL  ++   E+L   N   + +Q++LL + 
Sbjct: 2469 NQAFLAKEEAEKANKAKSDFISNMSHEMRTPLNHIIGSIELLKSYNHLFNSDQKELLDIS 2528

Query: 412  ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA--ASLQ--KILMLE 467
              S + +L ++N+ILDLSKVE G  KL    F     ++  +   +  A L+   I +  
Sbjct: 2529 AKSSESLLFMVNNILDLSKVEQGKTKLNLTNFNLVSFLEDSICAISPNAHLKGVYIALFI 2588

Query: 468  GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSK 527
                  +P  VIGD+  +RQ++ NL++NAIKFT  G+V IKL +           K++  
Sbjct: 2589 NPCLSKIP--VIGDINILRQVIVNLLTNAIKFTESGQVYIKLNLSINNNPTTTNNKKQLN 2646

Query: 528  AYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLE 587
                  D   ++                              DD G  +   N       
Sbjct: 2647 TDNDGDDDDDDDNENLDENNEDTSIDL---------------DDNGKVIYQKNPKSNQ-- 2689

Query: 588  ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV-ELMGGR 646
                +  +V D+GIGI       LF+++ Q+     R Y GTGLGL+I K LV  LM G 
Sbjct: 2690 -CYIVNIEVVDSGIGIKNEDFGKLFQRFSQIECGSNRAYDGTGLGLSIVKDLVCNLMKGD 2748

Query: 647  LTVTSKVHCGSTFTF 661
            + V SKV  GSTF F
Sbjct: 2749 IGVKSKVGVGSTFHF 2763



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 25/144 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSID--VVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            KIL+VEDN++N  +   M+ +LG   +  +  NG+E V   + + YDLI+MD+ MPVM G
Sbjct: 3305 KILIVEDNEMNANIMFKMLAKLGIQCEPHLALNGLEGVKKAKNEEYDLIIMDIQMPVMCG 3364

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            L AT LIR  E T                        KR PI+A+TA+A++    +  A 
Sbjct: 3365 LTATSLIRKHEGTK-----------------------KRTPIVAITASAMNGEMSKALAA 3401

Query: 979  GMDSFVSKPVTFQKLKECLEQYFP 1002
            G D ++SKP+  + L+  + +Y P
Sbjct: 3402 GCDDYLSKPLQLKDLRYVINRYGP 3425


>gi|117925672|ref|YP_866289.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
 gi|117609428|gb|ABK44883.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
          Length = 1177

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 137/262 (52%), Gaps = 30/262 (11%)

Query: 256 EEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSK---TFLIYVEP 312
           E  ++G TD  +FS    +  +     V+ K      E    T LFG      FLI   P
Sbjct: 694 EAALIGHTDQALFSPELAQLLKSGDELVINKNSCFSHE---ATGLFGDGHQVPFLIQKSP 750

Query: 313 VFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK- 371
           +    GE +G+  +  D+T          +LR E  +Q+AKE          E   R+K 
Sbjct: 751 MHGYQGELLGLIGVARDITQ---------RLRVEQELQQAKED--------AEAANRSKS 793

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+  V+ M EIL  T L+ EQ + +  M  +GD +L+LI++ILDLSK+
Sbjct: 794 EFLAAMSHEIRTPMNVVIGMGEILLETPLNAEQTRYINSMQHAGDALLELIDNILDLSKI 853

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQKI---LMLEGDIADDVPIE-VIGDVLRIRQ 487
           E+G M LE   FR   +V  +  T    LQ +   L L  +IA ++  + V+GD  R+RQ
Sbjct: 854 EAGRMTLEERAFRLDTMVISI--TDFFRLQALNHNLSLVVEIAPELEQQYVLGDAGRVRQ 911

Query: 488 ILTNLISNAIKFTPEGKVGIKL 509
           +L NL+ NA+KFT EG V + L
Sbjct: 912 VLYNLLGNALKFTEEGGVSLHL 933



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 27/162 (16%)

Query: 840  ISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
            I ++P + + E P+     +P  ILLVED++ N  + K+ ++   H++ +V NG +A+  
Sbjct: 1037 IVEAPCAFTPEHPQ-----RPLSILLVEDSEDNRTLFKAFLQHTPHALVMVENGADALER 1091

Query: 899  VQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
            V  + +DLI MD+ MP+MDG  ATR IR +E                    G   H    
Sbjct: 1092 VIVERFDLIFMDMQMPIMDGYSATRAIRQWEQ-----------------QRGVPPHI--- 1131

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             I A+TA+ALS   E     G D  ++KP+  +KL E ++Q+
Sbjct: 1132 -IYALTAHALSGDRERSLQAGCDDHLTKPIKKRKLLEIIQQH 1172



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 55/97 (56%), Gaps = 2/97 (2%)

Query: 579  GNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQ 638
            G S+   L+A   I   V DTGIGI    L  +F  + Q  +   R++GGTGLGLAIC++
Sbjct: 928  GVSLHLSLDANQHIHTRVSDTGIGIAPQQLERIFDNFTQEDSSVTRRFGGTGLGLAICRR 987

Query: 639  LVELMGGRLTVTSKVHCGSTFTFILPYQVS--PIEEN 673
              ELMGGR+ V S    GSTF   LP  +S  P+ E 
Sbjct: 988  FTELMGGRIWVESIEGQGSTFHMTLPLVLSHTPLHET 1024


>gi|345872886|ref|ZP_08824811.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
 gi|343917776|gb|EGV28557.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
          Length = 1104

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 101/331 (30%), Positives = 152/331 (45%), Gaps = 79/331 (23%)

Query: 339 KMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSN 397
           + A + E I  +K KE EL+      E   RAK + LA MSHEIR+PL  V+  AE+L  
Sbjct: 629 QFATVFENITDRKQKEEELSLAKEAAEAASRAKSEFLANMSHEIRTPLNAVIGFAELLER 688

Query: 398 TKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA 457
           T++D +Q+  L  + S G  +L+LI+DILDLSKV       EA K R             
Sbjct: 689 TEVDAQQKSYLESIESGGRTLLRLIDDILDLSKV-------EAGKLR------------- 728

Query: 458 ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV---GIKLYVVPE 514
             LQ   ML                  IR++  ++ S    F P+ +V    I+L +  E
Sbjct: 729 --LQPEPML------------------IRRMFEDVCS---IFEPKARVNGLSIRLDIAGE 765

Query: 515 PP--FAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDP 572
            P     + ++ +   +    +A+K           + +        GEG +      DP
Sbjct: 766 VPSCVLLDEMRMRQVLFNLVGNAIK----------FTHRGSIAIAVRGEGVER-----DP 810

Query: 573 GTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLG 632
                          + + +R ++ DTGIGIPE+   T+F  + Q      R+YGGTGLG
Sbjct: 811 ---------------SRIRLRIEIRDTGIGIPEHQRQTIFGSFEQQEGQSNRRYGGTGLG 855

Query: 633 LAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
           L I ++LVE+MGG + + S++  GS F  +L
Sbjct: 856 LTISRKLVEMMGGEIGLESEMGVGSIFAIVL 886



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 25/154 (16%)

Query: 849  AEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLIL 908
            A V E       ++++V+D   N  + + M++ LG ++   +NG +A+   +    DLIL
Sbjct: 903  AGVTEVVEFESARVMVVDDIDSNRQLIREMLQDLGLTVVEASNGEQALDLCRSDPPDLIL 962

Query: 909  MDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANAL 968
            MD+ MP MDG +    +RS  +T                          IPI+A+TA+  
Sbjct: 963  MDILMPGMDGYQVGESLRSMPETSG------------------------IPIVAVTASVA 998

Query: 969  SESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                 E  A  +D  ++KPV   +L   L ++ P
Sbjct: 999  LSGRLEGIAP-LDGMLTKPVNAVELVAELRRFLP 1031


>gi|302337704|ref|YP_003802910.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301634889|gb|ADK80316.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 1230

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/208 (35%), Positives = 115/208 (55%), Gaps = 15/208 (7%)

Query: 350  QKAKE--TELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQ 406
            QK KE   E+ K   + EE  +AK + LA MSHEIR+PLTG++ M  +L+ TKL++ QR 
Sbjct: 832  QKVKERTAEIEKARKVAEEATKAKSLFLANMSHEIRTPLTGMLGMFSLLAKTKLNQNQRS 891

Query: 407  LLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL-----QTAAASLQ 461
             L    ++ + + QL+ND+LD+  +ESG + L   +F P + + +V      +  A  L 
Sbjct: 892  FLDYSRTAAENLNQLVNDLLDVESIESGTLPLHETRFDPEKALAYVYHLFEERAKAQGLD 951

Query: 462  KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEG 521
              L +E   A D  +EV+GD  R  QI+TNL+SNA+K+T  G + +KL + P      E 
Sbjct: 952  FFLDIE---ASDPSLEVLGDRNRFIQIVTNLVSNALKYTESGSISLKLTIAPAELTQAEA 1008

Query: 522  LKQKSKAYQSATDAVKEEKHQPKSQTAS 549
             +++S     +   +      PK +T S
Sbjct: 1009 QRRRSYTVTVSDTGIG----IPKDKTGS 1032



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 76/141 (53%), Gaps = 30/141 (21%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KIL+ ED  IN     ++++  G ++DV  NG EAV   +  +Y LILMD+ MP +DGL+
Sbjct: 1112 KILVCEDEGINRFYLGTLLQNKGFAVDVAANGREAVRLAESNDYSLILMDLGMPEIDGLE 1171

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR+IR+             GI               +PIIA+TA++  E  ++C   GM
Sbjct: 1172 ATRMIRA------------QGIT--------------VPIIALTAHSYKEDIDKCREAGM 1205

Query: 981  DSFVSKPV----TFQKLKECL 997
            D F++KP+     F+K++  +
Sbjct: 1206 DDFLAKPILEPLLFKKIRTWI 1226



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIP++   ++F  + Q+   +A+   G GLGLAI KQLV+ M G ++V S    
Sbjct: 1018 VSDTGIGIPKDKTGSIFESFTQLDTGYAKSSKGVGLGLAIVKQLVDAMDGTISVESS-PG 1076

Query: 656  GSTFTFILPYQVSP 669
            G++FT  L + V+P
Sbjct: 1077 GTSFTVSLSFPVAP 1090


>gi|333915255|ref|YP_004488987.1| multi-sensor hybrid histidine kinase [Delftia sp. Cs1-4]
 gi|333745455|gb|AEF90632.1| multi-sensor hybrid histidine kinase [Delftia sp. Cs1-4]
          Length = 1085

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/211 (39%), Positives = 124/211 (58%), Gaps = 16/211 (7%)

Query: 310 VEPVFSKSGETIGV-----NYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT 364
           +E + +  G T+ V      Y+G DVT  V           +++ +   E+ L +     
Sbjct: 444 MEQLVTAQGRTLYVAYAPTRYLGQDVTLCVFA---------DVSARAEIESNLERARIAA 494

Query: 365 EETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           +E   AK   LATMSHEIR+PL G +   E+L  T+L + QR+ +  + +S  ++LQ+I+
Sbjct: 495 DEANEAKSTFLATMSHEIRTPLYGALGTLELLGLTELTQLQRKYVDRIEASSSILLQIIS 554

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDV 482
           DILD SK+E+G ++LE A F PRE+V++   + AA + Q  L+L   +   VP  V+GD 
Sbjct: 555 DILDTSKIEAGQLQLEKAPFNPRELVQNCTSSYAAMAQQNGLLLFSCVDAQVPESVLGDA 614

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
           +RIRQIL NLISNAIKFT  G V ++L  VP
Sbjct: 615 VRIRQILGNLISNAIKFTEAGHVIVRLRSVP 645



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 26/142 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+ EDN +N +  +  ++ LG  + V ++G EA+       +DL+L DV MP ++G +
Sbjct: 846  RVLVAEDNPVNQVTLRGQLESLGCEVTVADDGEEALALWDISPHDLVLTDVNMPYLNGYE 905

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
                +R+             G+                PI+ +TANA+ +    C   GM
Sbjct: 906  LAERLRA------------EGVA--------------CPIVGVTANAMLDEENRCLNAGM 939

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            ++++ KP+  + L   LE++ P
Sbjct: 940  NAWLVKPIPLRTLVRTLEKFAP 961



 Score = 44.7 bits (104), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTG+GI ++    LF  +  V  + +R   G GLGL+IC  L  +M   + V S+  
Sbjct: 656 EVCDTGVGIEKSLHGELFTPFYLVK-NSSRTARGAGLGLSICWSLARMMSSSIEVWSEPG 714

Query: 655 CGSTFTFILPYQVSPIEENS 674
            GS F F L  +    EE +
Sbjct: 715 LGSRFWFELGLETVAQEEEA 734


>gi|440681989|ref|YP_007156784.1| integral membrane sensor hybrid histidine kinase [Anabaena
           cylindrica PCC 7122]
 gi|428679108|gb|AFZ57874.1| integral membrane sensor hybrid histidine kinase [Anabaena
           cylindrica PCC 7122]
          Length = 756

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 104/165 (63%), Gaps = 10/165 (6%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L +++A+ +AKE          E   +AK + LA MSHEIR+P+ GV+ M ++LS T L 
Sbjct: 348 LEKQLALSQAKEA--------AETATQAKSEFLANMSHEIRTPMNGVIGMTQLLSMTNLS 399

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV-LQTAAASL 460
            EQ+ L+  +  SG+ +L +INDILD SK+ES  ++LE   F  R+++K V +  +  +L
Sbjct: 400 EEQQDLVHTIRDSGNALLAIINDILDFSKIESRNLELEERYFVLRDLIKSVCILLSEQAL 459

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
            K + LE  I  D+P  ++GD  R+RQIL NLI NAIKFT +G +
Sbjct: 460 NKNINLEYSIQADIPTNIVGDASRLRQILLNLIGNAIKFTHQGHI 504



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 81/151 (53%), Gaps = 27/151 (17%)

Query: 838 DRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
           D I +   + SA +  TK   K  ILL EDNK+N  VA   +K++G++ D+ NNG+E + 
Sbjct: 619 DFIQEESLAQSATLITTKDHIK--ILLAEDNKVNQRVALLYLKKIGYNADIANNGIEVLE 676

Query: 898 AVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR 957
            ++ Q YD+ILMD+ MP MDG+ ATR+IR       W                       
Sbjct: 677 ILEKQFYDVILMDMQMPEMDGITATRIIRQSSKPQPW----------------------- 713

Query: 958 IPIIAMTANALSESAEECFANGMDSFVSKPV 988
             IIA+TANAL E    CF  GM+ F++KP+
Sbjct: 714 --IIAITANALEEDRNACFNAGMNDFITKPI 742



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 40/59 (67%)

Query: 598 DTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCG 656
           DTGIGI  + L  LF+ + Q  A  +R+YGGTGLGLAI K LV LMGG++ V S  H G
Sbjct: 527 DTGIGIDSDRLNKLFQPFTQADASISRRYGGTGLGLAISKSLVALMGGKIWVESCGHIG 585


>gi|66810009|ref|XP_638728.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74854397|sp|Q54Q69.1|DHKG_DICDI RecName: Full=Hybrid signal transduction histidine kinase G;
            Includes: RecName: Full=Histidine kinase dhkG; Includes:
            RecName: Full=Probable serine/threonine-protein kinase
            dhkG
 gi|60467332|gb|EAL65363.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 3432

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 164/375 (43%), Gaps = 42/375 (11%)

Query: 308  IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLR---EEIAVQKAKETELNKTIHIT 364
            I V P+  + G  + + Y+  + +  +   EK+  L     +IA+  +      K   + 
Sbjct: 2410 ILVLPIVYQ-GNLVSILYLENNFSTGIFSNEKLEILNLISSQIAISFSNARLFIKVNQLA 2468

Query: 365  EETMRAKQ-----------MLATMSHEIRSPLTGVVSMAEILS--NTKLDREQRQLLGVM 411
             +   AK+            ++ MSHE+R+PL  ++   E+L   N   + +Q++LL + 
Sbjct: 2469 NQAFLAKEEAEKANKAKSDFISNMSHEMRTPLNHIIGSIELLKSYNHLFNSDQKELLDIS 2528

Query: 412  ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA--ASLQ--KILMLE 467
              S + +L ++N+ILDLSKVE G  KL    F     ++  +   +  A L+   I +  
Sbjct: 2529 AKSSESLLFMVNNILDLSKVEQGKTKLNLTNFNLVSFLEDSICAISPNAHLKGVYIALFI 2588

Query: 468  GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSK 527
                  +P  VIGD+  +RQ++ NL++NAIKFT  G+V IKL +           K++  
Sbjct: 2589 NPCLSKIP--VIGDINILRQVIVNLLTNAIKFTESGQVYIKLNLSINNNPTTTNNKKQLN 2646

Query: 528  AYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLE 587
                  D   ++                              DD G  +   N       
Sbjct: 2647 TDNDGDDDDDDDNENLDENNEDTSIDL---------------DDNGKVIYQKNPKSNQ-- 2689

Query: 588  ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV-ELMGGR 646
                +  +V D+GIGI       LF+++ Q+     R Y GTGLGL+I K LV  LM G 
Sbjct: 2690 -CYIVNIEVVDSGIGIKNEDFGKLFQRFSQIECGSNRAYDGTGLGLSIVKDLVCNLMKGD 2748

Query: 647  LTVTSKVHCGSTFTF 661
            + V SKV  GSTF F
Sbjct: 2749 IGVKSKVGVGSTFHF 2763



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 25/144 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSID--VVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            KIL+VEDN++N  +   M+ +LG   +  +  NG+E V   + + YDLI+MD+ MPVM G
Sbjct: 3305 KILIVEDNEMNANIMFKMLAKLGIQCEPHLALNGLEGVKKAKNEEYDLIIMDIQMPVMCG 3364

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            L AT LIR  E T                        KR PI+A+TA+A++    +  A 
Sbjct: 3365 LTATSLIRKHEGTK-----------------------KRTPIVAITASAMNGEMSKALAA 3401

Query: 979  GMDSFVSKPVTFQKLKECLEQYFP 1002
            G D ++SKP+  + L+  + +Y P
Sbjct: 3402 GCDDYLSKPLQLKDLRYVINRYGP 3425


>gi|262198444|ref|YP_003269653.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262081791|gb|ACY17760.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 830

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 116/212 (54%), Gaps = 3/212 (1%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           +A    L    H  +    AK + LATMSHE+R+P+ GV+ MA +L +  L  E  + + 
Sbjct: 289 EANNAALETARHAADAANEAKSRFLATMSHELRTPMNGVLGMAGLLLDMGLAPEPSEYVE 348

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAAS-LQKILMLEG 468
            + SSGD +L +INDILD SK+E+G+ +LE   F  R  V+      A S  +K L L  
Sbjct: 349 TIRSSGDALLAIINDILDFSKLEAGMFELELQPFSLRSCVEEAFDLVAVSAAKKRLELAL 408

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKA 528
            IA+DVP  V GD+ R+RQ++ NL+SNAIKFT  G+V I +   P+    + G++     
Sbjct: 409 RIAEDVPWTVRGDITRLRQVIVNLLSNAIKFTDVGEVVIAIACAPKIDCQRAGVRLHLSV 468

Query: 529 YQSATDAVKEEKHQPKSQTASDQNGFHDKKHG 560
             +    +  E H+   ++ S  +    +K+G
Sbjct: 469 RDTGV-GIPAELHKSLFRSFSQLDASISRKYG 499



 Score = 99.4 bits (246), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 23/139 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +IL+ EDN +N  VA+ ++++LG+  DVV NG+EAV AV  + YDL+LMD+ MP M+G++
Sbjct: 707 RILVAEDNVVNQKVARLLLRRLGYRCDVVANGLEAVDAVSRRRYDLVLMDMQMPEMNGIE 766

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR +R                 +A P  GS  H     I+AMTANA+ E  E C + GM
Sbjct: 767 ATRRLRG----------------EARP--GSPLH-----IVAMTANAMREDREACLSAGM 803

Query: 981 DSFVSKPVTFQKLKECLEQ 999
           D FVSKP+    L   LE+
Sbjct: 804 DDFVSKPLRVSDLVTVLER 822



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 57/102 (55%), Gaps = 12/102 (11%)

Query: 588 ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
           A V +   V DTG+GIP     +LFR + Q+ A  +RKYGGTGLGLAIC +LV LM GR+
Sbjct: 460 AGVRLHLSVRDTGVGIPAELHKSLFRSFSQLDASISRKYGGTGLGLAICARLVALMDGRI 519

Query: 648 TVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSV 689
            V S+   G+TF F +            D D +SD  D   V
Sbjct: 520 WVESEQGAGATFHFTI------------DVDAVSDSGDAGEV 549


>gi|163760024|ref|ZP_02167108.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
 gi|162282982|gb|EDQ33269.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
          Length = 848

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 105/162 (64%), Gaps = 4/162 (2%)

Query: 350 QKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
           QK KET+L  T     +  RAK + LATMSHEIR+P+ GV+ MAE+L+ T LD  QR   
Sbjct: 259 QKTKETDLALTKAKAAD--RAKSEFLATMSHEIRTPMNGVLGMAELLTRTDLDTRQRTFT 316

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAAS-LQKILMLE 467
            V++ SG+ +L++INDILD SK+++G M L    F   +  + V    ++  ++K + L 
Sbjct: 317 DVILKSGNALLEIINDILDFSKIDAGQMVLAPKPFSLVDTAEDVATLMSSRVVEKDIELA 376

Query: 468 GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             IA  +P ++IGD  R+RQILTNL+ NA+KFT +G V +++
Sbjct: 377 VRIAPGLPDQLIGDPGRVRQILTNLVGNAVKFTEQGHVMVEI 418



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 81/151 (53%), Gaps = 21/151 (13%)

Query: 852  PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
            P +  + +P +L+ EDN+IN +V +  ++ +G + ++  NG EAV        D++LMDV
Sbjct: 710  PLSMQREEPLVLVAEDNQINQIVFQQSLQGMGVNHELAINGREAVTKWSELRPDIVLMDV 769

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MP ++GL+AT  IR+ E                     + +     PIIA+TA+ L   
Sbjct: 770  SMPELNGLEATAEIRAIE---------------------ARDGLAPTPIIAVTAHTLKGD 808

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             + C A GMD ++SKP++ +KL   +E++ P
Sbjct: 809  EDRCLAAGMDDYMSKPISPEKLAAMIERWLP 839



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 49/76 (64%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +   V DTGIGIP + +  +F K+ QV     RK+ GTGLGLAI  +LVELMGG++ + S
Sbjct: 438 LSISVSDTGIGIPPDKIDAVFDKFSQVDGSSTRKHEGTGLGLAIATRLVELMGGQIKLES 497

Query: 652 KVHCGSTFTFILPYQV 667
            V  GSTF+F +   V
Sbjct: 498 TVGEGSTFSFTVEMDV 513


>gi|170293890|gb|ACB13025.1| putative histidine kinase sensor/regulator [Hydrogenophaga sp.
           PL2G6]
          Length = 439

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 107/175 (61%), Gaps = 3/175 (1%)

Query: 340 MAKLREEIAVQKAKET-ELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSN 397
           + +L E++  Q A+ T EL   +   E + RAK + LA MSHEIR+P+ G++ MA++L  
Sbjct: 24  LQQLAEDLEQQVAERTAELQMALDRAEASTRAKSEFLAMMSHEIRTPMNGILGMAQLLET 83

Query: 398 TKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA 457
           T LD EQ   L  + SSG+ +L L+NDILD SK+E+G + LE   F  +E +   L    
Sbjct: 84  TTLDTEQSDYLDAIRSSGETLLVLLNDILDFSKIEAGYLDLERQDFDLQEAIFSTLTLYR 143

Query: 458 ASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
              + K L L+   A  +P  V GD  R+RQ+L+NL++NAIKFT EG+V + + V
Sbjct: 144 PMAEGKSLALDHTFAAGLPTYVRGDRTRLRQVLSNLLANAIKFTSEGRVHVDVSV 198



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 26/149 (17%)

Query: 852 PET-KPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMD 910
           P+T + +   ++L+V+D++IN  +A +M+ +LG + +    G +AV  V   + D++LMD
Sbjct: 295 PKTAQVRDSRRVLVVDDDRINRALALAMLDKLGFAAESATCGEDAVTRVSAGDVDVVLMD 354

Query: 911 VCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970
           + MP MDG++ T  IR              G++   P            IIA+TANA   
Sbjct: 355 LQMPGMDGVQTTHFIR--------------GLDIRQPY-----------IIALTANAYES 389

Query: 971 SAEECFANGMDSFVSKPVTFQKLKECLEQ 999
             + C A GMD F++KP     L E L +
Sbjct: 390 DRQRCLAAGMDDFMAKPFRLSVLDEKLAR 418



 Score = 76.6 bits (187), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP N L  LFR + QV +   R+YGGTGLGLAI  +L   M G ++V+S+V  
Sbjct: 211 VEDTGIGIPHNRLDQLFRAFTQVDSSTTRRYGGTGLGLAISARLCAAMDGDISVSSRVGK 270

Query: 656 GSTFTF 661
           GS F F
Sbjct: 271 GSIFRF 276


>gi|384429644|ref|YP_005639004.1| two-component system sensor-response regulator hybrid protein
            [Xanthomonas campestris pv. raphani 756C]
 gi|341938747|gb|AEL08886.1| two-component system sensor-response regulator hybrid protein
            [Xanthomonas campestris pv. raphani 756C]
          Length = 767

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 27/195 (13%)

Query: 813  EANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP-----KILLVED 867
            +AN  ++     +E  +   +  +P + S +P+ +SA +PE  P P       +ILLVED
Sbjct: 446  QANATLVPRQSPDETLRALVLPPEP-KPSVAPTLASAMIPEPLPPPVAHARDVRILLVED 504

Query: 868  NKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRS 927
            N +N++VA+ ++  LG   D   +G  A+ +++   YD++ MD  MPV+DG  ATR  R+
Sbjct: 505  NPVNLLVAQKLLGVLGFEADTATDGEAALSSMESTRYDMVFMDCQMPVLDGYAATRRWRA 564

Query: 928  FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987
             E                     + +  + IPI+AMTANA++   E C A GMD ++SKP
Sbjct: 565  ME---------------------TESGGRPIPIVAMTANAMAGDRERCLAAGMDDYLSKP 603

Query: 988  VTFQKLKECLEQYFP 1002
            V  ++L  CL+++ P
Sbjct: 604  VAREQLDACLQRWLP 618



 Score =  109 bits (273), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 100/172 (58%), Gaps = 12/172 (6%)

Query: 350 QKAKETELNKTIHITEETMRAKQ-----------MLATMSHEIRSPLTGVVSMAEILSNT 398
           Q   + EL +   + +E +RAKQ            LATMSHEIR+PL G++ M E++S  
Sbjct: 80  QARMQQELQRHGELEQELLRAKQAAEAASLAKGEFLATMSHEIRTPLNGIIPMLELISRG 139

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
           +L  +QR +L     S   +L++++DILD SK+E+  ++LE   F  RE++  V Q    
Sbjct: 140 QLSLDQRDMLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVAQLMQR 199

Query: 459 SLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           + + K L L  DI   V + V GD +R+RQ+L NLI NAIKFT  G V I+L
Sbjct: 200 TAEGKQLRLGLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQL 251



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 49/74 (66%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTGIGI  +    LFR + Q  A   R YGGTGLGLAICK++++LMGGR+ V S
Sbjct: 263 LRFQVRDTGIGIAADQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVES 322

Query: 652 KVHCGSTFTFILPY 665
           +   G+TF F +P 
Sbjct: 323 EPGRGATFWFEIPL 336


>gi|300869576|ref|ZP_07114157.1| hypothetical protein OSCI_4120036 [Oscillatoria sp. PCC 6506]
 gi|300332444|emb|CBN59357.1| hypothetical protein OSCI_4120036 [Oscillatoria sp. PCC 6506]
          Length = 947

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 120/219 (54%), Gaps = 10/219 (4%)

Query: 301 FGSKT-FLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNK 359
           F  KT F I    +  K+G    + + G    D+     +M     +I  +K  E + ++
Sbjct: 701 FAKKTSFYITEHRIQCKNGNYKWILHRGRATWDEAGNPLRMVGSATDITDRKQAEQQRSE 760

Query: 360 TI-------HITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVM 411
            I          E   RAK + LA MSHEIR+P+  V+ M  +L +T L  EQR  +  +
Sbjct: 761 LIASLQEARDAAEAATRAKSEFLANMSHEIRTPMNAVIGMTSLLLDTPLTPEQRDFVETV 820

Query: 412 ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDI 470
            +SGD +L LINDILD SK+E+G ++LE   F  R+ ++  L   A  + +K L L   I
Sbjct: 821 RTSGDALLALINDILDFSKIEAGKLELEEQPFDLRDCIEASLDLLAPKAAEKGLDLAYII 880

Query: 471 ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             DVP  ++GD+ R+RQIL NL+SNA+KFT +G+V + +
Sbjct: 881 DGDVPSTIVGDISRLRQILVNLLSNAVKFTAKGEVVVSV 919


>gi|288959555|ref|YP_003449896.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911863|dbj|BAI73352.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1284

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 2/166 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I  +K  E  L       E   R+K + LATMSHEIR+P+ GV+ M E+++ T LD EQ
Sbjct: 545 DITARKLAEEALRAAKEQAEIAARSKAEFLATMSHEIRTPMNGVLGMLELMALTPLDEEQ 604

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKI 463
           R L+  M  SG  +L++I+DILDLSK+E+G ++LE     P ++V+ V    A  + QK 
Sbjct: 605 RTLVSTMRDSGAALLRIIDDILDLSKIEAGKLELEELDLSPADLVEGVADLLAPQAHQKG 664

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L L  DI   VP  + GD  R+RQIL NL  NAIKFT  G+V +++
Sbjct: 665 LALICDIDGSVPERLRGDSGRLRQILFNLTGNAIKFTDRGRVVLRV 710



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 21/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            IL+ ED+  N  V    +++LG++ ++  +G +A+ A +   + L++ D  MPVMDG + 
Sbjct: 1002 ILVAEDHPTNQQVVLRQLRRLGYAAELAADGAQALAAWRGGRHRLVITDCHMPVMDGYEL 1061

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
             R +R  E+                      +  +R PI+AMTANALS   E C A GMD
Sbjct: 1062 ARRLRLEEE---------------------KDGGRRTPIVAMTANALSGERERCLAAGMD 1100

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             +++KPVT  +L   L ++ 
Sbjct: 1101 DYLAKPVTLAQLSRVLARWL 1120



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 43/74 (58%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGI       LF+ + Q  +   R++GGTGLGLAIC +LVE MGGR+ V S    
Sbjct: 727 VEDSGIGIGPEGQARLFQPFSQADSSTTRRFGGTGLGLAICTRLVERMGGRIGVESVPGR 786

Query: 656 GSTFTFILPYQVSP 669
           GS F F +     P
Sbjct: 787 GSIFRFTVELARPP 800


>gi|443469717|ref|ZP_21059871.1| BarA sensory histidine kinase [Pseudomonas pseudoalcaligenes KF707]
 gi|442899169|gb|ELS25700.1| BarA sensory histidine kinase [Pseudomonas pseudoalcaligenes KF707]
          Length = 918

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 177/423 (41%), Gaps = 87/423 (20%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  V DTGIG+ +  +  LF+ + Q     +R+ GGTGLGL I K+L+E MGG + V+S
Sbjct: 438  LRISVQDTGIGLSDADVRALFQAFTQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVSS 497

Query: 652  KVHCGSTF--TFILPYQVSPIEENSD-----------DPDDLSDMADQDSVTDDVTAGFF 698
                GS F  +  LP  +   E+              +P +L+  A    + D    G  
Sbjct: 498  TPGVGSEFWISLSLPKSLDGSEDAFAPSLGRRLVAVLEPQELTRQALHHQLED---CGLE 554

Query: 699  QFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLED- 757
                 +L +L       R  K   + +G A        +  S S    +  +    LE+ 
Sbjct: 555  AADFSSLDALVEEVAARRQGK---HPLGLAV------IAADSRSLSPEDLARRVWELEEL 605

Query: 758  ACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANRE 817
             C    +  T    E +  H   PE+ +++     C                        
Sbjct: 606  GCKTLVLCPT---TEQALYHRVLPESHSQLQAKPVC------------------------ 638

Query: 818  MIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKS 877
                  T + Q+   +   P + +  PS      P     P  ++L V+DN  N+++ ++
Sbjct: 639  ------TRKLQQALSVLVAPRQAAVEPSG-----PVVSRAP--RLLCVDDNPANLLLVQT 685

Query: 878  MMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937
            ++  +G  +  V++G  A+ AVQ + +DL+LMDV MP MDG +AT  IR +E     D  
Sbjct: 686  LLGDMGADVLAVDSGFAALEAVQRERFDLVLMDVQMPGMDGRQATEAIRRWESQQGLDP- 744

Query: 938  AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
                                +PI+A+TA+AL+         GMD +++KP+  ++L + +
Sbjct: 745  --------------------VPIVALTAHALANEKRALLQGGMDDYLTKPIGERQLAQVV 784

Query: 998  EQY 1000
             ++
Sbjct: 785  LKW 787



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 88/138 (63%), Gaps = 1/138 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+PL G++    +L  + L   Q+  L  +  S D +L +IN++LD SK+
Sbjct: 287 EFLANMSHEIRTPLNGILGFTNLLKKSDLTPRQQDYLSTIEKSADNLLGIINEVLDFSKI 346

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + LE   F  R++V+  L   A S  +K L L   +  D P++++GD +R++Q+LT
Sbjct: 347 EAGKLVLENIPFNLRDLVQDTLTILAPSAHEKRLELVSLVYRDTPLQLVGDPMRLKQVLT 406

Query: 491 NLISNAIKFTPEGKVGIK 508
           NL+SNAIKFT EG + ++
Sbjct: 407 NLVSNAIKFTREGTIAVR 424


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
          Length = 1499

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 347 IAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQR 405
           + V +A+E EL K      E+ R K +  A +SHEIR+PL GV+ + E+L N  L+ +QR
Sbjct: 249 MTVLEAREQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNMGLNPKQR 308

Query: 406 QLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KIL 464
           + +    +SG+ +L+LI +ILD S++ESG  KL+   F  +E++  V+   AA  Q K L
Sbjct: 309 EYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLAAQAQRKEL 368

Query: 465 MLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            L   + D+VP+ + GD  RIRQIL NL++NA+KFT  G+V I++ ++
Sbjct: 369 ELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLL 416



 Score = 96.7 bits (239), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 23/141 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+VEDN++N  VA  M+++ G  ++VV+NG EA+ A+  + Y+L+LMD  MP MDG +
Sbjct: 663  RILVVEDNRVNQQVAVGMLERFGCRVEVVSNGQEALDAIANKVYELVLMDCHMPQMDGYE 722

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR IR   + GN                      K++PIIAMTAN     +++C + GM
Sbjct: 723  ATRRIR-VREAGN----------------------KQVPIIAMTANVRKGDSDKCISAGM 759

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            + ++ KP+    L++ L  + 
Sbjct: 760  NDYLPKPLRLSVLRDKLRHWL 780



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 49/80 (61%), Gaps = 5/80 (6%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIGIP      +F  + Q  +   RKYGGTGLGLAIC+QLV+LMGG + V S   
Sbjct: 428 EVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESGSG 487

Query: 655 CGSTFTFILPYQVSPIEENS 674
            GS F F      +P+EE S
Sbjct: 488 KGSIFWF-----TAPLEETS 502



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 24/157 (15%)

Query: 839  RISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
            R  Q  + S+ E+     K + ++L+V+D++   M  ++++++ G+ ID   NG +A+  
Sbjct: 903  RALQQENESNKEICLFNNKKRSRVLIVDDDRTMRMALRNVLEKGGYWIDEAVNGNQALEF 962

Query: 899  VQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
             + Q  DL+LMD  MPV+DG  A   IR   D+                        K  
Sbjct: 963  CKQQMPDLVLMDAVMPVLDGFNACAQIRDLPDS------------------------KHT 998

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKE 995
            P++ +TA     S E  F+ G   ++ KPV F  L++
Sbjct: 999  PVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLRK 1035


>gi|390949064|ref|YP_006412823.1| signal transduction histidine kinase [Thiocystis violascens DSM
           198]
 gi|390425633|gb|AFL72698.1| signal transduction histidine kinase [Thiocystis violascens DSM
           198]
          Length = 907

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/185 (38%), Positives = 115/185 (62%), Gaps = 3/185 (1%)

Query: 330 VTDQVRKREKM-AKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTG 387
           ++ ++ +RE + ++LR+     +    EL  ++   E+  RAK   +ATMSHEIR+P+ G
Sbjct: 339 LSAEIARREALESELRDNANRLEQMAAELQASVLRAEDASRAKSDFMATMSHEIRTPMNG 398

Query: 388 VVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447
           ++ M E+  +T+L  EQR  L ++  S D +L +INDILD SK+E+G + +E+  F    
Sbjct: 399 IIGMTELTLDTELTDEQRDCLNIVRMSADGLLTIINDILDFSKIEAGKLNVESIDFDLHR 458

Query: 448 VVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVG 506
           ++  V++T A    +K L L  +I   VP  V GD  R+RQILTNL++NAIKFT  G+V 
Sbjct: 459 LINEVMKTLAVKADEKHLELLCEIDSKVPRAVFGDPGRLRQILTNLLNNAIKFTETGEVA 518

Query: 507 IKLYV 511
           +++ +
Sbjct: 519 LRVVL 523



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 73/139 (52%), Gaps = 20/139 (14%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           KILL EDN +N  +   ++ + GH   +  NG EAV       +DLILMD+ MPVM GL+
Sbjct: 772 KILLAEDNAVNQKLMLMVLSKWGHEATLAQNGQEAVDWSARAPFDLILMDMQMPVMGGLE 831

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR IR  E T               PS        RIPI A+TA AL E      A G+
Sbjct: 832 ATRRIRDREATA------------PTPS--------RIPIYALTAAALPEERAAGLAAGL 871

Query: 981 DSFVSKPVTFQKLKECLEQ 999
           D +++KP+  ++L++ L +
Sbjct: 872 DGYLTKPLNKKELQDLLSE 890



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 4/101 (3%)

Query: 586 LEATVWIRCDVY----DTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
           L+ TV  R +++    DTGIGIP      +F  + Q      R++GGTGLGL I ++L E
Sbjct: 523 LQETVVDRLNLHFALRDTGIGIPPEHQARIFEAFSQQDTSTTRRFGGTGLGLTISRRLAE 582

Query: 642 LMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSD 682
           LMGGR+ V S+   GSTF  +L   +S  E  S  P DL D
Sbjct: 583 LMGGRIWVDSRPGEGSTFHVVLWLGLSTREALSPPPQDLRD 623



 Score = 44.3 bits (103), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 27/144 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMPVMD 917
            ++LLV+DN  N  V   ++ Q    +    +G EA+  ++      +D++L+D  MP MD
Sbjct: 625  RVLLVDDNATNRRVLGKLVVQWEMRLTEAADGREALQVLEANASTPFDVLLIDYHMPRMD 684

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +                   A ++Q          F+ + +I +++ ++      C  
Sbjct: 685  GFELA-----------------AALKQ-------DARFRDLKLIMLSSASVRGLGMRCRE 720

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             G+D+F++KPV   +L + +    
Sbjct: 721  LGIDAFLTKPVARHELLKAIHALL 744


>gi|255577536|ref|XP_002529646.1| histidine kinase 1 plant, putative [Ricinus communis]
 gi|223530872|gb|EEF32733.1| histidine kinase 1 plant, putative [Ricinus communis]
          Length = 1206

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 146/298 (48%), Gaps = 45/298 (15%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEIL-SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSK 430
           Q LA MSHE+R+P+  V+ + +IL S+  L  EQ   +  +      +L+L+N+ILDLSK
Sbjct: 507 QFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVTQIRKCSTALLRLLNNILDLSK 566

Query: 431 VESGVMKLEAAKF-RPREVVKHV----LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           VESG + LE A+F   RE+   +    +Q    +++ +L    D++D++P  V GD  R+
Sbjct: 567 VESGKLVLEDAEFDLGRELEGLIDMFSVQCINHNVEAVL----DLSDEMPKLVRGDSARV 622

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
            QI  NLISN+IKFT  G + ++ +            +  S +  +A   ++++K +   
Sbjct: 623 VQIFANLISNSIKFTTSGHIVLRGWC-----------ENISTSNDTAKSPLEQKKLRCAL 671

Query: 546 QTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605
           +T   Q G H KK  +                      ++ +  +W   D  DTG GI  
Sbjct: 672 KTKLRQQGNHMKKASK----------------------KENKVILWFEVD--DTGCGIDP 707

Query: 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
           +   ++F  + Q      R +GGTGLGL I + LV  MGG + V  K   G+     L
Sbjct: 708 SKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYL 765



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 49/177 (27%)

Query: 842  QSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
            Q+ S  +  V E K     +ILL ED  +   VA  M++++G ++  V +G++AV A+ C
Sbjct: 1038 QTSSCLNKSVKEQKALEGLRILLAEDTPVLQRVATIMLEKMGATVIAVGDGLQAVDALNC 1097

Query: 902  Q---------------------------NYDLILMDVCMPVMDGLKATRLIRSFEDTGNW 934
            +                            YDLILMD  MP MDG +AT+ IR  E     
Sbjct: 1098 RLSGRESRRESVFQDENNTSQTEMLDPPPYDLILMDCQMPKMDGYEATKAIRKSE----- 1152

Query: 935  DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
                          +GS  H   IPI+A+TA+A+S    +C   GMD++++KP+ ++
Sbjct: 1153 --------------AGSGLH---IPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYK 1192


>gi|421131632|ref|ZP_15591812.1| 7TM diverse intracellular signaling [Leptospira kirschneri str.
           2008720114]
 gi|410357006|gb|EKP04291.1| 7TM diverse intracellular signaling [Leptospira kirschneri str.
           2008720114]
          Length = 804

 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 154/337 (45%), Gaps = 73/337 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 386 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG 445

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G + LE      REV        
Sbjct: 446 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAGKVILE------REVF------- 492

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK+ I+ YV  +P
Sbjct: 493 --SIRSVL-------DE-----------IHDLLFPLAKQKEIDFRLEGKLEIQEYVYGDP 532

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N   D                   
Sbjct: 533 ------LRLRQILWNLAGNGIKFTNRGEVVLKVAQKNISKD------------------- 567

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
                         V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 568 -------------GVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 614

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEE 672
            KQL+EL GG L + S+   GS FTF + Y +  I E
Sbjct: 615 TKQLIELQGGVLKLESQEGEGSKFTFTIDYDIPSILE 651



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 677  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLETFDIILMDIHMPEVDGIE 736

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N   + P IIA+TA+A+  S E+  + G
Sbjct: 737  ATKWIR------------------------SKNQNSKFPIIIALTADAIESSREKYISKG 772

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 773  MNDCLTKPLDLPILKSTLDLW 793


>gi|418693864|ref|ZP_13254913.1| 7TM diverse intracellular signaling [Leptospira kirschneri str. H1]
 gi|409958441|gb|EKO17333.1| 7TM diverse intracellular signaling [Leptospira kirschneri str. H1]
          Length = 820

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 149/332 (44%), Gaps = 73/332 (21%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L  TKL+
Sbjct: 407 LKKEIQQRRETEWELIQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGTTKLN 466

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQ++ + V+  S   +LQ+INDILD SK+E+G               K +L+    S++
Sbjct: 467 DEQKEYVEVLSVSAKSLLQIINDILDFSKIEAG---------------KVILEREVFSIR 511

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEPPFAKE 520
            +L       D+           I  +L  L     I F  EGK  I+ YV  +P     
Sbjct: 512 SVL-------DE-----------IHDLLFPLAKQKEIDFRLEGKSEIQEYVYGDP----- 548

Query: 521 GLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGN 580
            L+ +   +  A + +K           + +N   D                        
Sbjct: 549 -LRLRQILWNLAGNGIKFTNRGEVVLKVAQKNISKD------------------------ 583

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
                    V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I KQLV
Sbjct: 584 --------GVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLV 635

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQVSPIEE 672
           EL GG L + SK   GS FTF + Y +  I E
Sbjct: 636 ELQGGVLKLESKEGKGSKFTFTIDYDIPSILE 667



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 693  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLETFDIILMDIHMPEVDGIE 752

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N   + P IIA+TA+A+  S E+  + G
Sbjct: 753  ATKWIR------------------------SKNQNSKFPIIIALTADAIESSREKYISKG 788

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 789  MNDCLTKPLDLPILKSTLDLW 809


>gi|421143572|ref|ZP_15603511.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           BBc6R8]
 gi|404505263|gb|EKA19294.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           BBc6R8]
          Length = 965

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 120/215 (55%), Gaps = 26/215 (12%)

Query: 347 IAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQ 406
           +A Q+A E    KT+            LATMSHEIR+PL GV+   E+++ T +   QR 
Sbjct: 474 LARQEATEANEAKTV-----------FLATMSHEIRTPLYGVLGNLELMALTDMSERQRH 522

Query: 407 LLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV-KHVLQTAAASLQKILM 465
            L ++  S  ++ QLI+++LD+SK+ESG M +EAA F P ++V + VL  +A +  K L 
Sbjct: 523 YLEIIQGSSTVLFQLISNVLDVSKIESGQMAVEAAPFSPGQLVAESVLAFSATARNKGLQ 582

Query: 466 LEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQK 525
           ++ +I   +P +++GD  RIRQ+L NL+ NAIKFT  G+V ++L V       ++ L  K
Sbjct: 583 IDAEIDPLLPPQLLGDAGRIRQVLHNLLGNAIKFTDSGRVRLRLMV-------QQLLDDK 635

Query: 526 SKAYQSATDA-------VKEEKHQPKSQTASDQNG 553
                  TD          ++  +P  Q A DQ+G
Sbjct: 636 VTLQWQVTDTGVGIPEKALDQLFKPFYQVAGDQDG 670



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 28/156 (17%)

Query: 844 PSSSSAEVPETKPKP--KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
           PS+    +P     P    ++L+ EDN ++  V +  ++ LG    V  +G  A+     
Sbjct: 717 PSAEQPPMPPCLDAPCLNVRVLVAEDNPVSQAVLQEQLEALGAHPTVARDGEHALQIWGS 776

Query: 902 QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII 961
           Q +DL++ D+ MP ++G    R +R            E G++              +PII
Sbjct: 777 QPFDLVITDINMPRLNGYDLARALR------------EQGVQ--------------VPII 810

Query: 962 AMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
            +TANAL E  E C A GM+++V KP++   L++ L
Sbjct: 811 GVTANALREEGERCLAVGMNAWVVKPLSLSMLRQAL 846



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 586 LEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
           L+  V ++  V DTG+GIPE AL  LF+ + QV+ D  +   G GLGL+IC +L ELMGG
Sbjct: 632 LDDKVTLQWQVTDTGVGIPEKALDQLFKPFYQVAGD--QDGNGAGLGLSICSRLSELMGG 689

Query: 646 RLTVTSKVHCGSTFTFILPYQV 667
            + V S+   GS+F+  +   V
Sbjct: 690 SMRVVSEPGLGSSFSLFITLPV 711


>gi|387894587|ref|YP_006324884.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           A506]
 gi|387162690|gb|AFJ57889.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           A506]
          Length = 932

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/169 (41%), Positives = 106/169 (62%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +K  E  L +     +    AK + LATMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 431 DISARKQVEAALEEARQSADAANAAKTLFLATMSHEIRTPLYGVLGTLELLARTQLDAQQ 490

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
           +  L  +  S   +LQLI D+LD+SK+E+G + LE  +F   ++V  ++Q  AAA+  K 
Sbjct: 491 KDYLQAIEGSSSTLLQLICDVLDVSKIEAGQLALEMGEFSALDLVHEIIQGYAAAAHAKG 550

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L L       +P  +IGDV RIRQIL NL++NA+KFT  G+V +++ V+
Sbjct: 551 LQLYACFDPKLPERLIGDVTRIRQILNNLLNNAVKFTDYGRVVLRVKVL 599



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 26/139 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN IN ++ +  +++LG ++++  +G +A+      N+D++L DV MP ++G + 
Sbjct: 812  LLVAEDNIINQLILRDQLEELGCTVELAADGQQALQLHTAGNFDVVLTDVNMPHINGYEL 871

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
             R +R    T                          +PII  TANA+   A+ C A GM+
Sbjct: 872  ARELRRQGCT--------------------------LPIIGATANAMRGEADLCLAAGMN 905

Query: 982  SFVSKPVTFQKLKECLEQY 1000
              + KP   + L   L  Y
Sbjct: 906  HCLVKPFALRALFNSLAPY 924



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           D +  + +W    V DTG GI +     +F  + Q S  +     GTGLGL IC++L EL
Sbjct: 602 DGERSSLLW---QVSDTGKGIAQEDQAMIFEPFYQ-SEGNTNVVAGTGLGLPICQRLTEL 657

Query: 643 MGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
           M G + + S++  GS+F+ IL     P+EE S  P
Sbjct: 658 MNGNIRMVSELGLGSSFSLIL-----PLEEASVPP 687


>gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1138

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 91/160 (56%), Gaps = 23/160 (14%)

Query: 843  SPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
            +P + +A   + + KP+ ++L+ EDN +N  +  +++++ G + + V+NG EAV AV  +
Sbjct: 862  NPVAGTAPARQPEAKPRARVLVAEDNPVNQQLTLALLRRAGLNAEAVSNGEEAVEAVTAR 921

Query: 903  NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
             YDL+LMDV MPVMDGL ATR IR                       G S    RIPIIA
Sbjct: 922  PYDLVLMDVQMPVMDGLMATRRIR-----------------------GLSGRVARIPIIA 958

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            +TANA+   A  C   GMD ++SKP+  +KL + + ++ P
Sbjct: 959  LTANAMQGDATICLEAGMDDYLSKPINARKLLDAIARFVP 998



 Score = 97.8 bits (242), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 97/171 (56%), Gaps = 2/171 (1%)

Query: 341 AKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTK 399
           A +  ++  +K  E  L       E+  R K + LATMSHEIR+P+ GV+ MA +L +T 
Sbjct: 411 AAILRDLTEEKRLEHTLRDAKEQAEDGQRIKMEFLATMSHEIRTPMNGVIGMAGLLLDTA 470

Query: 400 LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA- 458
           L  +QR     +  S + +L +INDILD SK+++G ++LE  +F    +V+ V +  A  
Sbjct: 471 LQADQRGYAETIRDSAESLLVVINDILDFSKIDAGRLELEIGEFELVPLVESVAEILAPR 530

Query: 459 SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           ++ K L L   +   +   ++GD  R+RQIL NL  NA+KFT  G V I L
Sbjct: 531 AVAKGLDLASFVPPGLRGTLLGDAGRLRQILLNLAGNAVKFTDSGSVTILL 581



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 52/77 (67%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V +R +V DTGIGIPE   P LF  + QV +  AR++GGTGLGLAICK+L ELMGGR+ +
Sbjct: 597 VRVRFEVRDTGIGIPEEDRPRLFTMFSQVDSSPARRHGGTGLGLAICKRLTELMGGRIGL 656

Query: 650 TSKVHCGSTFTFILPYQ 666
            S    GS F   +P +
Sbjct: 657 DSHPGTGSVFWVSVPLK 673


>gi|189424781|ref|YP_001951958.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421040|gb|ACD95438.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1007

 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 102/171 (59%), Gaps = 2/171 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I  +K  E +L       E    AK   LA MSHEIR+P+ G++ M  +L  T +  EQ
Sbjct: 604 DITARKQAEQQLRSAKEAAEAANSAKSAFLANMSHEIRTPMNGIIGMTHLLQTTVITPEQ 663

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
              L  + +S + +  LI+DILDLSK+ESG ++LE + F  R  ++ +L +    +Q K 
Sbjct: 664 EHYLENIENSANSLTTLISDILDLSKIESGKLELEYSDFSLRRCIRELLASQQFQIQHKE 723

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
           LM++ DIAD+VP  + GD LR RQIL NLI NAIKFT +G + I   +V +
Sbjct: 724 LMVQTDIADNVPDILRGDQLRTRQILLNLIGNAIKFTEQGSIAITARLVAQ 774



 Score = 83.2 bits (204), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 74/138 (53%), Gaps = 22/138 (15%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           ILL EDNK+N      ++ + GH I  V NG +A+  +Q Q +D +LMD+ MPV+ G  A
Sbjct: 882 ILLAEDNKVNAEFIVKILGRTGHRITAVENGQQALELLQHQRFDCVLMDIQMPVLGGDAA 941

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
           T++IR                EQ +   G+  H   IPIIA+TA+A+++      + G D
Sbjct: 942 TQIIR----------------EQEL---GTGEH---IPIIALTAHAMTDERIRLLSQGFD 979

Query: 982 SFVSKPVTFQKLKECLEQ 999
           + VSKPV    L   LE+
Sbjct: 980 AHVSKPVDISFLVSELER 997



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 5/89 (5%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           IR  + DTGIG+    +  +F  + Q      RKYGG+GLGLAIC++L+ELMGGR+   S
Sbjct: 781 IRLSISDTGIGMSPQQVDRIFAPFEQADNSITRKYGGSGLGLAICQRLIELMGGRIWAES 840

Query: 652 KVHCGSTF----TFILPYQVSPIEENSDD 676
               GS+F     F +P + S I+  +D+
Sbjct: 841 TEGNGSSFHIEMRFFIP-ESSAIQSFADN 868


>gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1547

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 161/313 (51%), Gaps = 36/313 (11%)

Query: 211 EELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPS---LHEEDILGKTDVEI 267
           E LS+ L R ++ + ++     V     D    + ++ + + +   L  ED+L  + V  
Sbjct: 696 EALSETLGRFNDLVVYMSVGVYVFWIRADGRQEFEYVSDGWCAMNHLRREDVLANSAVA- 754

Query: 268 FSGAGVKESQDFKREVLEKGLPAKREITFETE----LFGSKTF-LIYVEPVFSKSGETIG 322
           F+    +E ++F   +L     A+ +  F  E    + G   F L+   PVF  +G+   
Sbjct: 755 FNMIHPEELENF---ILLNQEAAREKKRFHWEGRVVINGEVRFALVESNPVFFDNGDC-- 809

Query: 323 VNYMGM--DVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSH 379
             + G+  D+T++V+ +E++      IA  +A            +   RAK + LA MSH
Sbjct: 810 -RWFGIQQDITERVQDQERL-----RIATMQA------------DAASRAKSEFLANMSH 851

Query: 380 EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
           EIR+P+ GV+ M  +L  T L+  QR+    + SSG  +L L+NDILD SK+ESG ++LE
Sbjct: 852 EIRTPMNGVIGMTGLLLETDLNETQRRYAETVRSSGQALLALLNDILDFSKIESGKLELE 911

Query: 440 AAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
           A  F  R+ + +     A  + +K L        DVP  +IGD  RIRQILTNL+ NA+K
Sbjct: 912 ALNFDLRDTLDNFASMMAFKAEEKGLEFICSADPDVPDNLIGDPGRIRQILTNLVGNAVK 971

Query: 499 FTPEGKVGIKLYV 511
           FT  G+V +++ +
Sbjct: 972 FTERGEVVVRVSI 984



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 108/218 (49%), Gaps = 23/218 (10%)

Query: 800  WFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPK 859
            WF     +   H E    +      +EPQ +       +  S+S     ++        K
Sbjct: 1192 WFAAFLAKPLRHDELFDCLSLVMAGDEPQDLVTRHSAREEKSRSGKIDFSD-------RK 1244

Query: 860  PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
             +ILL EDN  N  VA +M+K  G S D V NG+EA+ A++   YDL+LMDV M  MDGL
Sbjct: 1245 ARILLAEDNITNQQVALAMLKNFGLSADAVANGLEAIKALKTVPYDLVLMDVQMLEMDGL 1304

Query: 920  KATRLIRSFEDTG-------------NWDAAAEAGIEQAMPSSGSSN--HFKRIPIIAMT 964
             ATR IR+ E  G             + +++    +   +P S +S    F RIPIIAMT
Sbjct: 1305 AATRRIRAAEIRGRELEVRDQRLKSESQNSSIPESLNPLIPQSLNSRIPEF-RIPIIAMT 1363

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            A+A+    E C   GMD +++KPV   +L + LE++ P
Sbjct: 1364 AHAMRGDRERCMEAGMDDYLAKPVEPGRLSQVLEKWLP 1401



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIP + +  LF+ + QV A   RK+GGTGLGLAI KQL E+MGG + V S    
Sbjct: 1004 VRDTGIGIPADKVGDLFQSFSQVDASITRKFGGTGLGLAISKQLAEMMGGDVGVDSVEGQ 1063

Query: 656  GSTFTFILPYQVS-PIEENSDDPDDLSDM 683
            G+TF F +   ++   E     P DL D+
Sbjct: 1064 GTTFWFTIRLALAGTAEAEVPVPADLLDV 1092


>gi|422321542|ref|ZP_16402588.1| proline sensor PrlS, partial [Achromobacter xylosoxidans C54]
 gi|317403605|gb|EFV84095.1| proline sensor PrlS [Achromobacter xylosoxidans C54]
          Length = 944

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 92/138 (66%), Gaps = 1/138 (0%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LATMSHEIR+PL GV+   E+LS T LD EQR+ +  +  S  ++ QLI+DILD++K+E
Sbjct: 500 FLATMSHEIRTPLYGVLGTLEVLSLTHLDDEQRRHVDRIQDSSVILQQLISDILDITKIE 559

Query: 433 SGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           SG + LE   F PRE+V+H + + A  + QK L++   I    P  V+GD  RIRQIL N
Sbjct: 560 SGQLGLEMDGFDPRELVQHCVASYAGMAEQKGLVIYSCIDTSTPAWVVGDGGRIRQILNN 619

Query: 492 LISNAIKFTPEGKVGIKL 509
           L++NAIKFT  G V  +L
Sbjct: 620 LVNNAIKFTDSGHVVARL 637



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 26/119 (21%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +IL+ EDN IN +     ++QLG  + +  +G EA+     + +D++L DV MP M+G +
Sbjct: 852 RILVAEDNPINQVTMCDQLEQLGCQVTLAPDGAEALAQWNIEPFDVVLTDVNMPRMNGYE 911

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
               +R+   T                          +PII +TANAL +    C A G
Sbjct: 912 LAGALRAQGVT--------------------------VPIIGVTANALKDEEARCKAAG 944



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 596 VYDTGIGIPENALPTLFRKYMQV-SADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           V D+G+GI       LF  + Q+ S  H  +  G G+GL+IC +L ELMG  + VTS++ 
Sbjct: 653 VVDSGVGISAENQVCLFEPFYQIDSGSHLVR--GAGIGLSICARLAELMGSTIQVTSELG 710

Query: 655 CGSTFTFIL 663
            GS+F+  +
Sbjct: 711 LGSSFSIAI 719


>gi|386818422|ref|ZP_10105640.1| histidine kinase [Thiothrix nivea DSM 5205]
 gi|386422998|gb|EIJ36833.1| histidine kinase [Thiothrix nivea DSM 5205]
          Length = 774

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)

Query: 344 REEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDR 402
           R  + VQ A   +      I EE ++ K + LATMSHEIR+P+ GV+ M  +L NT + +
Sbjct: 231 RFNLIVQTATAAQ-----RIAEEAVKTKARFLATMSHEIRTPMNGVIGMTRLLMNTPMSK 285

Query: 403 EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQ 461
           +Q +    +  SG+ +L +IND+LD SK+E+G + L+   F  R  ++ VL   +A +L+
Sbjct: 286 KQTEFTESIRLSGEHLLTVINDVLDFSKIEAGKLDLKRESFELRSCIEEVLNLLSAKALE 345

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           K L L   +A ++P+ + GD++R+RQILTNLI NAIKFT  G V +
Sbjct: 346 KKLELAYVVAPNIPLYIEGDMVRLRQILTNLIGNAIKFTDSGNVTV 391



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 26/161 (16%)

Query: 840  ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
            ++    +S+ ++ E  P     ILL EDN IN +VA S++ ++G+ ID+  NG +A+ A+
Sbjct: 622  VTNRQKTSTLKLAERLPL---TILLAEDNPINQVVASSILDEMGYKIDLAENGRQAIAAL 678

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
              +NYD+I MD+ MP M GL+ TR IR+                   P +      ++  
Sbjct: 679  HKKNYDVIFMDMQMPEMGGLETTRHIRA-----------------EFPPA------RQPA 715

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            IIAMTANA+    +EC   GM+ ++SKPV  + ++  LEQ+
Sbjct: 716  IIAMTANAMDGDRQECLNAGMNDYISKPVLPEAVEAALEQW 756



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           DEDLE    +  ++ DTG GIP + L ++F ++  +     R Y GTGLGL+I + LVE+
Sbjct: 400 DEDLE----LEFEISDTGCGIPADRLDSVFEQFSHIDDGQTRHYEGTGLGLSISRNLVEM 455

Query: 643 MGGRLTVTSKVHCGSTFTFIL 663
           MGGR+ V S ++ GS F F +
Sbjct: 456 MGGRIWVKSILNKGSRFHFTI 476


>gi|333908287|ref|YP_004481873.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
           IVIA-Po-181]
 gi|333478293|gb|AEF54954.1| multi-sensor hybrid histidine kinase [Marinomonas posidonica
           IVIA-Po-181]
          Length = 1481

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 109/195 (55%), Gaps = 38/195 (19%)

Query: 321 IGVNYMGMDVTDQVRKREKMAKLREE-IAVQKAKETELNKTIHITEETMRAKQMLATMSH 379
           +GVN   MD+T +    E +    E+ +A  KAK                    LATMSH
Sbjct: 790 VGVN---MDITSRKETEELLRSASEQAVAASKAK-----------------SDFLATMSH 829

Query: 380 EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
           EIR+PL GV+ MAE+LS TKLDREQ + L V+  SG+ +L+LI+ ILD SK+E+G + +E
Sbjct: 830 EIRTPLNGVLGMAELLSGTKLDREQGEQLRVLQDSGESLLELIDGILDFSKIEAGHLSIE 889

Query: 440 AAKFRPREVVKHVLQTAAASLQKILMLEG---------DIADDVPIEVIGDVLRIRQILT 490
              F         L+ A   + ++LM++          +  D  P  ++GDV RI+Q++T
Sbjct: 890 RVDFD--------LEKAIFDVVRLLMIKAEEKGIDLLVEYEDSCPRYLVGDVFRIKQVIT 941

Query: 491 NLISNAIKFTPEGKV 505
           NL+SNAIKFT  G V
Sbjct: 942 NLVSNAIKFTHVGHV 956



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 21/142 (14%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+VED K N+ VA  ++ ++G  +    NG   V +      DLILMD+ MPVMDGL 
Sbjct: 1223 RILVVEDMKANMAVAHGVLSRMGFEVLEATNGELGVESWHQHQPDLILMDLHMPVMDGLT 1282

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            A R IR  E            +EQ            R+PI A+TA+ + E++ E F  G 
Sbjct: 1283 AMRRIRQAEK-----------VEQ----------LNRVPIFALTADIMPETSAEVFRAGG 1321

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D  V KP     L + +E++ P
Sbjct: 1322 DGVVPKPFKQIHLTQLIEEWLP 1343



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 50/79 (63%)

Query: 585  DLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMG 644
            D +  V +   V DTG+GI  +  P LF  ++Q  +   RK+GGTGLGLAI KQLV LM 
Sbjct: 965  DHQGQVALTMSVKDTGVGIARDVQPHLFSAFVQADSSTTRKFGGTGLGLAITKQLVGLMN 1024

Query: 645  GRLTVTSKVHCGSTFTFIL 663
            G++ + S+++ GS F+  L
Sbjct: 1025 GQVALESELNEGSCFSVSL 1043



 Score = 40.8 bits (94), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 41/172 (23%)

Query: 843  SPSSSSAEVPETKPKPK------------PKILLVEDNKINVMVAKSMMKQLGHSIDVVN 890
            S  S S  + E+  KP+             K ++++DN+ N+ + K+ +   G   D  +
Sbjct: 1037 SCFSVSLTLTESHAKPRVEHVTDEALLIGKKTIVIDDNETNLTILKNQLASSGIVADTES 1096

Query: 891  N---GVEAVHAV--QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945
                G+  +H      Q YD+I++D  MP +DGL  ++ IR F                 
Sbjct: 1097 QPRKGLSRIHWAYENQQPYDIIVLDYMMPDLDGLMLSKKIREF----------------- 1139

Query: 946  MPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
                GS       P I +T++A   S +E    G++  ++KP+    LK+ L
Sbjct: 1140 ---CGSLYQ----PTILITSSAGLLSHQELTDAGINLCIAKPMGALSLKKGL 1184


>gi|374322486|ref|YP_005075615.1| sensor protein [Paenibacillus terrae HPL-003]
 gi|357201495|gb|AET59392.1| sensor protein [Paenibacillus terrae HPL-003]
          Length = 891

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 118/200 (59%), Gaps = 8/200 (4%)

Query: 311 EPVF-SKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           E VF  K G +  V+Y    + D   ++  +      + V    E E+ +     E   R
Sbjct: 586 EAVFWKKDGSSFLVSYRISPLMDNGERKGAVM-----VFVDMTNEKEIIRAKESAERADR 640

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + L+ MSHE+R+P+ G++ MA +L++T+LD EQR  + ++ +S   ++Q++N+ILDL
Sbjct: 641 AKSEFLSVMSHELRTPMNGIIGMAGLLADTELDEEQRSYIDIITNSSSALMQILNEILDL 700

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
           SK+E+G M L    FR  EV+  V       +++K + LE  +  ++P  ++GD +RIRQ
Sbjct: 701 SKIEAGKMSLLHEPFRLEEVIGSVADLFLKQAMEKGIELEWHLDQELPGMLVGDHVRIRQ 760

Query: 488 ILTNLISNAIKFTPEGKVGI 507
           +L NL+SNA+KFT  G+V +
Sbjct: 761 VLVNLVSNAVKFTERGRVYV 780



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 45/72 (62%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +   V DTGIGIP N    LF+ + Q+     RKYGGTGLGL+ICK LV LMGG + V S
Sbjct: 796 VEFSVRDTGIGIPTNRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVSLMGGSIDVDS 855

Query: 652 KVHCGSTFTFIL 663
               G+TF F L
Sbjct: 856 DEARGATFRFQL 867


>gi|322693017|gb|EFY84895.1| putative histidine kinase HHK6p [Metarhizium acridum CQMa 102]
          Length = 1372

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/229 (40%), Positives = 131/229 (57%), Gaps = 17/229 (7%)

Query: 282 EVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETI-GVNYMGMDVTDQVRKREKM 340
           +V E GL  +   T    ++G KT         + S  TI GV  + MDVT ++R RE  
Sbjct: 721 DVKEHGLDDRWYRTRFLPMYGKKT-----HDGKTTSDSTIEGVIGVIMDVT-ELRDRE-- 772

Query: 341 AKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTK 399
               E +  Q  ++ +        +E  R K Q LA MSHEIR+P+TGV+ MAE+LS+  
Sbjct: 773 ----EALLKQSREKRKAVANEAAAKEANRLKSQFLANMSHEIRTPITGVLGMAELLSHMD 828

Query: 400 LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAAS 459
           LD EQR  L  + SS   +L +INDILD SKVESG + +E  +F    VVK V++    +
Sbjct: 829 LDEEQRDYLDNIQSSATSLLTVINDILDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRFA 888

Query: 460 LQ-KILMLEGDIADDV--PIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           ++ K L  + DI  D+   + VIGD  R+RQI+TNL++N+IKFT +G V
Sbjct: 889 VERKNLDFQSDIGSDIENDMVVIGDPGRVRQIITNLLTNSIKFTNQGYV 937



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 27/165 (16%)

Query: 842  QSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
            ++P     ++P T+ + K  IL+VEDN +N M+A   +++LG  +    NG EA+  +  
Sbjct: 1087 RTPPCVDQDMPRTE-RAKTHILVVEDNPVNQMIAIKTIQKLGFQVTAAWNGKEALEYLMA 1145

Query: 902  ----QNY--DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955
                QN   D+ILMDV MP++DG K T L+R                      S      
Sbjct: 1146 TSRGQNMKPDMILMDVQMPIIDGYKCTHLLRHH--------------------SPYKTLL 1185

Query: 956  KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            + +PI+AMTA+A+    E+C   GMD +++KPVT   L+  L ++
Sbjct: 1186 QDVPIVAMTASAIHGDREKCNKAGMDDYLAKPVTMNILERMLIRW 1230



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 49/74 (66%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            I+  V DTGIGI E+    LF+ + Q  A  AR++GGTGLGL ICK L++LM GR+ + S
Sbjct: 953  IKFVVEDTGIGIQEDVRKRLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILES 1012

Query: 652  KVHCGSTFTFILPY 665
             V  G+  +F +P+
Sbjct: 1013 TVDSGTKASFWIPF 1026


>gi|392410312|ref|YP_006446919.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
 gi|390623448|gb|AFM24655.1| PAS domain S-box [Desulfomonile tiedjei DSM 6799]
          Length = 1147

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 153/299 (51%), Gaps = 24/299 (8%)

Query: 218 KRADNFLHFVLQNAPVVMGHQD-KELRYRFIYNHFPS----LHEEDILGKTDVEIFSGAG 272
           KR    L  ++QN P  +  +D ++L+Y  ++N   +       +++LGKT  + F    
Sbjct: 363 KRTKALLDSIVQNLPTPVFLKDARDLKY-ILWNRASTEIYGYSGDELLGKTAHDFFPKEQ 421

Query: 273 VKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTD 332
                +  RE L  G                K   +  + V +++  T  ++   + + D
Sbjct: 422 ADRFVEQDREALTSG----------------KMLCVSEQLVDNRNKGTRIMHTKKLPILD 465

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
           +      +  + E+I  +K  E  L +     E+  RAK + LA MSHEIR+P+ G+V M
Sbjct: 466 EDGSSRYLLVISEDITERKEAEQALIRAREAAEQASRAKSEFLANMSHEIRTPINGIVGM 525

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
            ++  NT+L  EQ + L  + +S + +L+LINDILD SK+E+G ++L A  F  R+ +  
Sbjct: 526 TQLALNTQLTPEQVEYLEAVETSAEALLRLINDILDFSKMEAGKLELVAVDFSLRDSIAE 585

Query: 452 VLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            + T A     K L L   +A+ +P  + GD  R+RQIL NLI+NA+KFT  G+V +K+
Sbjct: 586 TMTTLAVQAHAKGLELLYQVAESIPDTLTGDPGRLRQILINLIANALKFTERGEVVVKV 644



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 83/140 (59%), Gaps = 22/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILL EDN +N  +A  M++++GH++ V  NG EA+  ++ Q +DL+LMDV MP+MDGL+A
Sbjct: 899  ILLAEDNAVNQKLAVKMLERMGHTVSVSANGQEALDCLKIQKFDLVLMDVQMPIMDGLEA 958

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR++R  E T N                      + +PI+AMTA A+    E+C   GMD
Sbjct: 959  TRIVREHEKTSN----------------------EHVPIVAMTAYAMKGDKEKCLDAGMD 996

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP+  Q+L E LE  F
Sbjct: 997  GYISKPINAQELFETLEDLF 1016



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 55/101 (54%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           D + +  + +   V DTGIGIP      +F  + Q     +RKYGGTGLGLAI  +LV +
Sbjct: 647 DSETKREIRLHFSVADTGIGIPAEKQQRIFNAFEQADGSTSRKYGGTGLGLAISSELVRM 706

Query: 643 MGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDM 683
           M G + + S+   GS F F   ++V+    ++  P D+S +
Sbjct: 707 MDGSIWLESEPGRGSIFHFTSTFRVAKEPIHTPAPADVSAL 747



 Score = 45.4 bits (106), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 30/155 (19%)

Query: 839 RISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
           R+++ P  + A    +  +  P +L+V+DN  N  + ++ + Q      +V+ G  A+HA
Sbjct: 730 RVAKEPIHTPAPADVSALENLP-VLVVDDNATNRRILENTLLQWQTKPTIVDGGEAALHA 788

Query: 899 VQCQN-----YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
           ++  +     + L++ D  MP MDG +   L+R   +  +W          A P+     
Sbjct: 789 MKSAHEEGRPFKLVITDCMMPEMDGFE---LVRRINEHPSW----------ATPT----- 830

Query: 954 HFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
                 II +T+      A  C   G+ +++ KP+
Sbjct: 831 ------IIMLTSAGERGDAARCMKLGISAYLLKPI 859


>gi|403158938|ref|XP_003319617.2| hypothetical protein PGTG_01791 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375166525|gb|EFP75198.2| hypothetical protein PGTG_01791 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1635

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 27/225 (12%)

Query: 323  VNYMGMDVTDQVRKREKMAKLREE------IAVQKAKE-----TELNKTIHITEETM--- 368
            VN M M++T QVR   +++           + V+ + E      ++N  +    + +   
Sbjct: 1022 VNQMAMNLTAQVRAFAQISSAATNGDFSAFVTVEASGEMNSLKNQINSMVFSLRDALQKN 1081

Query: 369  -----------RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGD 416
                       R+K + LA MSHEIR+P+ G++ M +I   T+L R QR+ L ++ +  +
Sbjct: 1082 TAAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTQITLATELTRHQRENLTIVYAMAN 1141

Query: 417  LVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVP 475
             +L +I+D+LDLSK+E+G M +E   F  R  +  VL++ A  +L   L L  +IA +VP
Sbjct: 1142 NLLLIIDDVLDLSKIEAGRMTIEKVPFALRTSIFDVLKSLAVKALTSNLQLVFEIAPNVP 1201

Query: 476  IEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKE 520
              V+GD  R+RQ++TNLI NAIKFT  G VG+   V    P   E
Sbjct: 1202 DFVVGDPFRMRQVITNLIGNAIKFTSSGHVGLSCKVATLDPVTGE 1246



 Score =  103 bits (257), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 71/128 (55%), Gaps = 21/128 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KILL EDN +N  VA  ++   GH ++VV+NG  AV A     YDL+LMDV MP M GL+
Sbjct: 1471 KILLAEDNHVNQKVATKLLDMGGHKVEVVDNGELAVEAATKNTYDLVLMDVSMPTMGGLE 1530

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT LIR  E                       NH +R+PIIA+TA+A+    E C   GM
Sbjct: 1531 ATSLIRKHEQ---------------------DNHLERVPIIALTAHAMLGDRERCIDAGM 1569

Query: 981  DSFVSKPV 988
            D +V+KP+
Sbjct: 1570 DDYVTKPL 1577



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 42/68 (61%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V+DTGIGI  + L  +F  + Q      RKYGGTGLGL I K+LV LM G L V S+ + 
Sbjct: 1253 VFDTGIGIKPDKLNLIFDTFCQADGSTTRKYGGTGLGLTISKRLVNLMEGTLWVESEYNH 1312

Query: 656  GSTFTFIL 663
            GS F F +
Sbjct: 1313 GSRFYFTI 1320


>gi|406835512|ref|ZP_11095106.1| PAS domain S-box [Schlesneria paludicola DSM 18645]
          Length = 925

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/141 (44%), Positives = 96/141 (68%), Gaps = 1/141 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ GV+ M E++ +T L  EQR+ +  + +S D +L +INDILD SK+
Sbjct: 271 EFLANMSHEIRTPMNGVIGMTELVLDTDLTTEQREYVQAVKTSADALLTVINDILDFSKI 330

Query: 432 ESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + L+  +   RE++ + L+  A  + +K L L  DIAD+VP   + D +R+RQIL 
Sbjct: 331 EAGKLDLDPIQLDLREMISNTLRPLAMRAHEKGLELTCDIADEVPDLHMADPVRLRQILI 390

Query: 491 NLISNAIKFTPEGKVGIKLYV 511
           NLI NA+KFT +G+VG+ + V
Sbjct: 391 NLIGNAVKFTAQGEVGLTVTV 411



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 23/164 (14%)

Query: 836 KPDRISQSPSSSSAEV-PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
           +P  +   P S++ E  PET      +ILL +DN IN  VA  M+++ GH++ V N+G E
Sbjct: 641 EPPSVDVFPISTTQESDPETTRIRPLQILLADDNLINQKVAVRMLERQGHTVVVANDGTE 700

Query: 895 AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
            +  +  Q++D+ILMDV MPVM G +AT  IR+ E+        E G             
Sbjct: 701 VLQILAMQSFDVILMDVQMPVMGGFEATARIRAIEE--------ETG------------- 739

Query: 955 FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
              +PIIAMTA+A+    E C   GM+ ++SKP+   +L   L+
Sbjct: 740 -AHLPIIAMTAHAMKGDRERCLGAGMNDYLSKPIKASELAAVLQ 782



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           DV DTGIGIP   L  +F  + Q      R++GGTGLGL I  QLVE+MGGR+ + S V 
Sbjct: 424 DVSDTGIGIPPEKLAKVFEPFSQADGSTTRRFGGTGLGLTISAQLVEMMGGRVWIESHVG 483

Query: 655 CGSTFTFILPYQVSPIEENSDDP------DDLSDMADQDSVTD 691
            GS F F      +P   + + P      + LS +   D+ T+
Sbjct: 484 RGSHFHFTASLGRAPAVPSKNLPCKSGNLNGLSALVVDDNATN 526


>gi|428220130|ref|YP_007083602.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena sp.
           PCC 7367]
 gi|427992473|gb|AFY72166.1| integral membrane sensor hybrid histidine kinase [Pseudanabaena sp.
           PCC 7367]
          Length = 1081

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 94/139 (67%), Gaps = 1/139 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ G++ M ++L  T L+ EQ   L  M +S   ++ +INDILDLSK+
Sbjct: 472 RFLANMSHEIRTPINGIIGMMDLLQYTPLNAEQTDFLSTMRNSTQSLMLVINDILDLSKL 531

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G M+LE  +F+  + V+ V++  A  + QK L +   IA DVP+ ++GD  R+RQ+LT
Sbjct: 532 EAGQMQLELKRFKLNDCVEGVMELMAGQASQKQLEMAIYIAPDVPLHLVGDAYRLRQVLT 591

Query: 491 NLISNAIKFTPEGKVGIKL 509
           NL+SNAIKFT +G +   L
Sbjct: 592 NLVSNAIKFTEKGVIKTTL 610



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 44/178 (24%)

Query: 851  VPETKP-KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY----- 904
            +P++ P + K ++LLVEDN +N  VA+  +++LG+ +  V++G +A+ A+    Y     
Sbjct: 915  LPDSDPSQAKIRVLLVEDNPVNQKVARKQLERLGYEVTCVDDGQKALVALIPAGYANLDT 974

Query: 905  ---------------------DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIE 943
                                 D++LMD  MP +DG +ATR +R++E         E    
Sbjct: 975  NIEAKAREGVGAIANLPPPEFDVVLMDCQMPRLDGYEATRRLRAWE---------EQLYR 1025

Query: 944  QAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            Q +P        + + ++ +TANA+    E+C A GMD ++SKPV    L   L+++ 
Sbjct: 1026 QHVP--------RHMVVVGLTANAMKGDREKCLAAGMDDYLSKPVVMNDLNSTLKRWL 1075



 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 48/73 (65%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           TV +R +V DTGIGI  N    LF+ + QV     RKYGGTGLGLAICKQ+V LM G + 
Sbjct: 619 TVEVRFEVSDTGIGIAANKQNVLFQSFSQVDISTTRKYGGTGLGLAICKQIVGLMMGEIG 678

Query: 649 VTSKVHCGSTFTF 661
           V S+   GSTF F
Sbjct: 679 VESESGQGSTFWF 691


>gi|77459260|ref|YP_348767.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77383263|gb|ABA74776.1| sensor protein RcsC putative two-component system, sensor kinase
           [Pseudomonas fluorescens Pf0-1]
          Length = 936

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 153/337 (45%), Gaps = 78/337 (23%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ ++  E  L +     +    AK + LATMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 429 DISARRQIEAALERARQSADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTQLDTQQ 488

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
           +  L  +  S   +LQLI D+LD+SK+E+G + LE + F    + + V+Q  AA+ Q K 
Sbjct: 489 KSYLRAIEGSSATLLQLICDVLDVSKIEAGQLALELSDFSIVALAQEVVQGYAAAAQSKG 548

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLK 523
           L L       +P  +IGD+ R+RQIL NL+SNA+KFT  G+V +++ V+     ++EG  
Sbjct: 549 LQLYACFDPQLPDSLIGDISRVRQILNNLLSNAVKFTDSGRVVLRVNVL-----SREG-- 601

Query: 524 QKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMD 583
                                 +    Q    D   G  + D     +P    + GNS  
Sbjct: 602 ----------------------ERVCVQWQVSDTGRGIAHDDQAFIFEPFYQ-TRGNSH- 637

Query: 584 EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
                       +  TG+G+P                              IC +L  LM
Sbjct: 638 -----------VIAGTGLGLP------------------------------ICLRLTNLM 656

Query: 644 GGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDL 680
            G L + S+   GS+F+  LP +    + + + P D+
Sbjct: 657 NGTLRMVSEPGLGSSFSLTLPLE----QRSGNTPPDI 689



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 26/139 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            IL+ EDN IN ++ +  +++LG ++ + ++G EA+   Q   +D++L DV MP ++G + 
Sbjct: 816  ILVAEDNAINQLILRDQLQELGCTVALASDGEEALSLWQANTFDVVLSDVNMPRLNGYEL 875

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
             + +R    T                           PII  TANAL      C A GM+
Sbjct: 876  AKTLRRLGCT--------------------------TPIIGATANALRGEEALCLAAGMN 909

Query: 982  SFVSKPVTFQKLKECLEQY 1000
              + KP T + L   L  Y
Sbjct: 910  HCLIKPFTLRALSIVLAPY 928


>gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 1240

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 347 IAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQR 405
           + V +A+E EL K      E+ R K +  A +SHEIR+PL GV+ + E+L N  L+ +QR
Sbjct: 249 MTVLEAREQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNMGLNPKQR 308

Query: 406 QLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KIL 464
           + +    +SG+ +L+LI +ILD S++ESG  KL+   F  +E++  V+   AA  Q K L
Sbjct: 309 EYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLAAQAQRKEL 368

Query: 465 MLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            L   + D+VP+ + GD  RIRQIL NL++NA+KFT  G+V I++ ++
Sbjct: 369 ELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLL 416



 Score = 96.7 bits (239), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 23/141 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+VEDN++N  VA  M+++ G  ++VV+NG EA+ A+  + Y+L+LMD  MP MDG +
Sbjct: 663  RILVVEDNRVNQQVAVGMLERFGCRVEVVSNGQEALDAIANKVYELVLMDCHMPQMDGYE 722

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR IR   + GN                      K++PIIAMTAN     +++C + GM
Sbjct: 723  ATRRIR-VREAGN----------------------KQVPIIAMTANVRKGDSDKCISAGM 759

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            + ++ KP+    L++ L  + 
Sbjct: 760  NDYLPKPLRLSVLRDKLRHWL 780



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 49/80 (61%), Gaps = 5/80 (6%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIGIP      +F  + Q  +   RKYGGTGLGLAIC+QLV+LMGG + V S   
Sbjct: 428 EVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESGSG 487

Query: 655 CGSTFTFILPYQVSPIEENS 674
            GS F F      +P+EE S
Sbjct: 488 KGSIFWF-----TAPLEETS 502



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 24/157 (15%)

Query: 839  RISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
            R  Q  + S+ E+     K + ++L+V+D++   M  ++++++ G+ ID   NG +A+  
Sbjct: 903  RALQQENESNKEICLFNNKKRSRVLIVDDDRTMRMALRNVLEKGGYWIDEAVNGNQALEF 962

Query: 899  VQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
             + Q  DL+LMD  MPV+DG  A   IR   D+                        K  
Sbjct: 963  CKQQMPDLVLMDAVMPVLDGFNACAQIRDLPDS------------------------KHT 998

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKE 995
            P++ +TA     S E  F+ G   ++ KPV F  L++
Sbjct: 999  PVLIITALDDDHSIESAFSAGATDYIPKPVHFSVLRK 1035


>gi|94267625|ref|ZP_01290943.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93451924|gb|EAT02648.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 483

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/211 (39%), Positives = 121/211 (57%), Gaps = 21/211 (9%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           V P+ S SG  IG  ++     D  R+RE  + L        AKE          E  +R
Sbjct: 172 VAPIASFSG-IIGAVFV---FRDTRREREIQSHL------LAAKEQ--------AEGALR 213

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHEIR+PLT V+ MA++L  T+LD  QRQ +    ++G+ +L LIN ILDL
Sbjct: 214 AKGEFLAGMSHEIRTPLTAVLGMADLLDKTRLDSHQRQYVAASRAAGENLLDLINGILDL 273

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
           SK+E+G +++E+ +F   ++V+   +     + Q+ L      +   P  V+GD  RIRQ
Sbjct: 274 SKIEAGRLEVESVEFDLDQLVRQTCEIMNLRARQQGLEFVHHSSCAGPCLVMGDPTRIRQ 333

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVVP-EPPF 517
           +L NLI NAIKFT EG+V ++L  +P  PP+
Sbjct: 334 VLVNLIGNAIKFTEEGRVMVELACLPAAPPY 364



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 49/74 (66%)

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
           + RC V DTGIGIP      +F  + Q  +   R+YGGTGLGLAI ++LV +MGG++++ 
Sbjct: 368 FFRCTVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLV 427

Query: 651 SKVHCGSTFTFILP 664
           S+   GSTFT  +P
Sbjct: 428 SREGGGSTFTMEIP 441


>gi|443474974|ref|ZP_21064938.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
 gi|443020231|gb|ELS34214.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
          Length = 1137

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 151/296 (51%), Gaps = 18/296 (6%)

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKES 276
           L+++ N L   + NAPV +   D   ++  I   F       I G    E+ +   + E 
Sbjct: 361 LRQSQNLLKLTIDNAPVGIATFDLHTKFLNINQSFC-----QIFGYRAEELLN---MTEQ 412

Query: 277 QDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETI-GVNYMGMDVTDQVR 335
           Q      +E  L A R++  E +    K    Y+     + G  I  ++  G+ V D+  
Sbjct: 413 QITHANSIEATLAALRQLQ-ENQTTSVKIEKQYIH----RMGYAIDAISRFGL-VRDEQG 466

Query: 336 KREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEI 394
           K  +     E+I  +K  E +L       E   +AK Q LA MSHEIR+P+  V+ M +I
Sbjct: 467 KPIQFVAEVEDITERKRTEAKLEAA-KFAEAANQAKSQFLAVMSHEIRTPMNAVIGMTDI 525

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
           L +T L  +QRQ +  +   G+++L +IN+ILD S++ESG  +LE   F  ++ V  V +
Sbjct: 526 LQDTPLSPQQRQYVNTIRQGGEVLLSVINNILDFSRIESGKFELEEQPFYLQKCVDEVFE 585

Query: 455 TAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
              + + +K L L   I  ++P ++IGD  R+RQIL NL+SNAIKFT  G++ I +
Sbjct: 586 LMTSRMAEKSLELFALIDPNIPQQIIGDYSRLRQILVNLVSNAIKFTASGEIIITI 641



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 55/81 (67%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIGI   A+  LF+ + Q  +   R+YGGTGLGLAICKQL ELMGG++ V S+V 
Sbjct: 658 EVSDTGIGILPEAIGRLFQAFSQADSSINRQYGGTGLGLAICKQLCELMGGKIGVQSQVG 717

Query: 655 CGSTFTFILPYQVSPIEENSD 675
            GSTF+F +  Q    + +S+
Sbjct: 718 EGSTFSFSIMAQAIAFDRHSE 738



 Score = 83.2 bits (204), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 25/139 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KIL+ EDN IN  +   M++ LG+++  V NG +A++A+    YDLI MD+ MP+MDGL 
Sbjct: 893  KILIAEDNPINQKILWLMLETLGYNVASVENGQKALNAIANNAYDLIFMDIQMPIMDGLT 952

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            A++ IR       W                         II ++ANA  ES +   A+GM
Sbjct: 953  ASKNIRLMSIHQPW-------------------------IIGLSANAFVESYDLALASGM 987

Query: 981  DSFVSKPVTFQKLKECLEQ 999
            D +++KP+    L   L++
Sbjct: 988  DDYLTKPLQTASLIAALQR 1006


>gi|431799851|ref|YP_007226755.1| PAS domain-containing protein [Echinicola vietnamensis DSM 17526]
 gi|430790616|gb|AGA80745.1| PAS domain S-box [Echinicola vietnamensis DSM 17526]
          Length = 1329

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 168/343 (48%), Gaps = 26/343 (7%)

Query: 224 LHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFK 280
           L+  + +AP  +   DKE+RY    N +     L  +D+ GK+  E+F G   +E +   
Sbjct: 559 LNAFVTHAPAAVAMFDKEIRYIAYSNRWLEEYQLEGKDLYGKSHYEVF-GTISEEWKAIH 617

Query: 281 REVLEKGLPAKREITFETELFGSKTFLIY-VEPVFSKSGETIGVNYMGMDVTDQVRKREK 339
              L+  + +  E  +  + +    FL + V P     G   G+  +  D+T+   +RE 
Sbjct: 618 ARCLKGEVISNEEDRWRPDGWDHDQFLRWEVRPWHHYDGSIGGIMMLTQDITESCLQRE- 676

Query: 340 MAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNT 398
                           EL K   + E+  +AK + LA MSHEIR+PL GV+   +++  T
Sbjct: 677 ----------------ELKKAKILAEQASKAKSEFLANMSHEIRTPLNGVIGFTDLVLKT 720

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
            L   Q Q L ++  SG+ +L +INDILD SK+E+G ++L+  +    E+ +        
Sbjct: 721 DLSETQAQYLSIVNQSGNALLNIINDILDFSKIEAGKLELDIDRCDLYELTEQTSDIITY 780

Query: 459 SLQKI-LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPF 517
            + K  L +  +I  D+P  +  D +R++QI+ NL+ NA KFT EG++ ++LY + +   
Sbjct: 781 EVHKKGLEMLLNIHPDIPRFIWVDSVRVKQIMVNLLGNASKFTEEGEIELQLYPIDKDEA 840

Query: 518 AKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHG 560
           ++E + + S   +     +K EK     +  S ++    KK+G
Sbjct: 841 SREMVIRFS--VRDTGIGIKAEKQTKIFEAFSQEDVSTTKKYG 881



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 31/207 (14%)

Query: 801  FQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSA-----EVPETK 855
            F + +++     +A +E+    K  +P K+ EM +    I++      A     ++P+  
Sbjct: 1013 FLHSSSDDDKILKACKELGVRKKLVKPIKLQEMYDALLSINKKQDYRKATDQNIDLPKNL 1072

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVN--NGVEAVHAVQCQNYDLILMDVCM 913
                 K+L+VEDN IN+++AK+++  L  +  ++   NG EA+  ++ +   +I MDV M
Sbjct: 1073 FPNDGKVLIVEDNTINMLLAKTVIHNLSPATAILEAANGKEALEVMKDELPSVIFMDVQM 1132

Query: 914  PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE 973
            P M+G +AT+ IR   +  N                        I IIA+TA  +    E
Sbjct: 1133 PEMNGYEATQAIRKKYNKHN------------------------ILIIALTAGNIKGERE 1168

Query: 974  ECFANGMDSFVSKPVTFQKLKECLEQY 1000
            +C   GM+ F++KP   + + + +E++
Sbjct: 1169 KCMQAGMNDFIAKPFVEEDVIKLMEKW 1195



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 40/72 (55%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           IR  V DTGIGI       +F  + Q      +KYGGTGLGL I  +L++LM   L + S
Sbjct: 846 IRFSVRDTGIGIKAEKQTKIFEAFSQEDVSTTKKYGGTGLGLTISNRLLQLMHSGLQLHS 905

Query: 652 KVHCGSTFTFIL 663
            V  GSTF F L
Sbjct: 906 TVGKGSTFYFDL 917



 Score = 53.5 bits (127), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA-VQCQNYDLILMDVCMPVMDGLK 920
            +L+V+DN  N M+ + MM   G S     NG EA+   V+ + +D++LMD  MP M+G++
Sbjct: 938  VLIVDDNDNNRMIIERMMALRGISTSQAKNGFEAIQKFVEGEKFDVVLMDYHMPYMNGIE 997

Query: 921  ATRLIRSFED 930
              R IR   D
Sbjct: 998  TIRKIREIVD 1007


>gi|443475915|ref|ZP_21065846.1| histidine kinase [Pseudanabaena biceps PCC 7429]
 gi|443019200|gb|ELS33329.1| histidine kinase [Pseudanabaena biceps PCC 7429]
          Length = 548

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 105/167 (62%), Gaps = 3/167 (1%)

Query: 346 EIAVQKAK-ETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
           EIA+ K + E +L K     E   RAK M LA MSHE+R+P+ GV+   E+L+ TKL  E
Sbjct: 118 EIAMYKHQIEGQLAKAKEDAEAATRAKSMFLANMSHELRTPMNGVLGSTELLAATKLTAE 177

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-K 462
           Q+ L+ ++  SG+ +L+++NDILD SK+E+G+M LEA +F   +++  + +      Q K
Sbjct: 178 QQNLVQIIQHSGNTLLEIVNDILDFSKIEAGMMTLEAREFVLEDILSAICKLLNKQAQDK 237

Query: 463 ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            + L   IA  +P + IGD  R+ QIL NLI NAIKFTP G + I +
Sbjct: 238 QIQLNYAIASHLPSKFIGDSTRMYQILLNLIDNAIKFTPSGHIAISI 284



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 73/141 (51%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILLVEDN  N  +A  ++++LG+  D  +NG+EA+ A+Q   YDL+LMDV MP MDGL 
Sbjct: 421  RILLVEDNFFNRKIASIILEKLGYQPDHASNGLEAIAAIQQNIYDLVLMDVQMPEMDGLT 480

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+LIR       W                         I+AMTA+ L E  + CF  GM
Sbjct: 481  ATKLIRRDIKYYPW-------------------------IVAMTADVLPEDRQACFDVGM 515

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            + ++SKP   Q L      Y 
Sbjct: 516  NDYLSKPFKTQDLVRIFSVYI 536



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 40/61 (65%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI +  L  LF+ + Q     +R+YGGTGLGLAI K+LVELMGG +   S  H 
Sbjct: 302 VCDTGIGIQQEYLAKLFQAFTQADDSISRRYGGTGLGLAITKRLVELMGGTIWAESGGHV 361

Query: 656 G 656
           G
Sbjct: 362 G 362


>gi|451820687|ref|YP_007456888.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
 gi|451786666|gb|AGF57634.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
          Length = 949

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 136/260 (52%), Gaps = 17/260 (6%)

Query: 251 FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYV 310
           F  L++ D+  +   +IFS     +  +   ++  K  P+K EI  E      +   I  
Sbjct: 224 FFGLNKSDLEYQDLYDIFSIDIANKLSELNWDLFRKNEPSKTEIELENGKGEKRLLQINS 283

Query: 311 EPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRA 370
            P   ++G T  +     D+T+Q +  +++ K +E+     A+   + K+          
Sbjct: 284 NPYRDEAGNTKYLVCTAEDITEQRKAEKELLKAKEQ-----AEAANVAKS---------- 328

Query: 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSK 430
            Q LA MSHEIR+P+ G+    E+L  T+L  EQ + +    S+ +++L +INDILD SK
Sbjct: 329 -QFLANMSHEIRTPMNGIFGFLELLQTTELSLEQEEFIREAKSASEILLYIINDILDFSK 387

Query: 431 VESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           +E+  + +E+ KF  R  ++  +   +  +++K L +   I D VP EVIGD  RIRQIL
Sbjct: 388 IEAKKLVMESIKFNLRTTIEDAVSLLSHKAVEKGLEIYVMIKDGVPEEVIGDPSRIRQIL 447

Query: 490 TNLISNAIKFTPEGKVGIKL 509
            NLISNA+KFT  G + + +
Sbjct: 448 NNLISNAVKFTESGDISVSV 467



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 79/148 (53%), Gaps = 23/148 (15%)

Query: 851 VPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMD 910
           V E K   KPKILLVEDN+IN  +   ++K    + D+  NG EAV AV  ++YD++ MD
Sbjct: 711 VKEIKHSLKPKILLVEDNEINRKIVIGILKSREMTCDIAVNGSEAVKAVLERDYDVVFMD 770

Query: 911 VCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970
             MPVMDG ++T  IR  E                    G   H     IIAMTANA+  
Sbjct: 771 CQMPVMDGYESTARIRELE--------------------GEKKH---TTIIAMTANAMEG 807

Query: 971 SAEECFANGMDSFVSKPVTFQKLKECLE 998
            +E+C   GMD ++SKP+ F+ +   +E
Sbjct: 808 DSEKCIQAGMDYYISKPINFELMFSMIE 835



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 48/74 (64%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIGI +  +  LF+ + Q  A   RKYGGTGLGLAI  +LV++M G + V S+  
Sbjct: 482 EVKDTGIGIRKEDIHKLFQSFNQADASTTRKYGGTGLGLAISSELVKMMDGEMNVESEFG 541

Query: 655 CGSTFTFILPYQVS 668
            GSTF F +  +++
Sbjct: 542 KGSTFKFNVNLKIA 555


>gi|373954442|ref|ZP_09614402.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|373891042|gb|EHQ26939.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 936

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 125/199 (62%), Gaps = 8/199 (4%)

Query: 316 KSGETIGVNYMGMDVTDQVRKR-EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM- 373
           KS +  GVN    + +++++ + E++  L EE+  Q+ +E    +     E+  +AK + 
Sbjct: 366 KSEQMRGVNQELQEQSEELQAQSEELRALNEELLSQRQQEQAARED---AEKANQAKSVF 422

Query: 374 LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433
           LATMSHEIR+P+ GV+ MA +L  T L+ EQR+ +  + +SG+ +L +I+D+LD SK+ES
Sbjct: 423 LATMSHEIRTPMNGVLGMASLLEETTLNNEQREYVSTIKNSGETLLSVISDVLDFSKIES 482

Query: 434 GVMKLEAAKFRPREVVKHVLQTAAASLQKI-LMLEGDIADDVPIEVIGDVLRIRQILTNL 492
           G + L+  +F  R+ ++ V+   +  + +I L L   I  +VP  +I D LR++Q+L NL
Sbjct: 483 GKLDLDPHQFNLRQCIEEVMDIFSGKVARIGLDLVYQIGYEVPAHIIADSLRLKQVLINL 542

Query: 493 ISNAIKFTPEGKV--GIKL 509
           + NAIKFT +G+V  G+ L
Sbjct: 543 VGNAIKFTSKGEVFLGVSL 561



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 36/212 (16%)

Query: 788 SRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSS 847
           SRG +   +    F     +     +  R +IQTS    P+     Q  P  ++      
Sbjct: 745 SRGDEAKTKYPGLFTAVLNKPVKQQQLGR-VIQTSLQQNPEPEVHQQSTPVLLT------ 797

Query: 848 SAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLI 907
               PE   K    IL+ EDN IN  +   ++ +LG+   V  NG+E +   +   +D+I
Sbjct: 798 ----PEFAEKHPLNILVAEDNLINQKLILRILSKLGYEATVAQNGLEVIALTELHKFDVI 853

Query: 908 LMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967
           LMD+ MP+MDGL+AT++IRS            + IEQ               IIAMTANA
Sbjct: 854 LMDIQMPMMDGLEATQIIRS------------SKIEQPF-------------IIAMTANA 888

Query: 968 LSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
           + E  E+C   GMD ++SKP+  +     L +
Sbjct: 889 MPEDKEDCLKAGMDDYLSKPIHLESFLTALSK 920



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 51/67 (76%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIGIP + LP LF+ + Q+ +   R+YGG+GLGLAIC++LV LM G++TV S++ 
Sbjct: 575 EVKDTGIGIPRDKLPRLFKAFSQIDSSTTRRYGGSGLGLAICERLVHLMEGQITVESQLD 634

Query: 655 CGSTFTF 661
            G+TF F
Sbjct: 635 LGTTFRF 641


>gi|392549182|ref|ZP_10296319.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           rubra ATCC 29570]
          Length = 975

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 173/380 (45%), Gaps = 81/380 (21%)

Query: 300 LFGSKTFLIYV--EPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETEL 357
           L   K++ I+V  +  F  S   +G+N +   + D ++  +  A  RE   +Q + E+E+
Sbjct: 200 LLDQKSYDIHVTEKLSFGLSKTAVGINQLINQIRDIIQGNQ--AAQRELKQLQTSLESEV 257

Query: 358 N-KTIHITEETMRAKQ-------MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
             +T+ + + T+ A++        LATMSHEIR+P+ GV+   ++L  T+LD  Q +L  
Sbjct: 258 QARTLALEKATLNAERASEAKTTFLATMSHEIRTPMNGVIGTIDLLRQTELDGAQHRLTT 317

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGD 469
           ++  S   +L +++DILD SK+E+G ++++ + F   E ++ V +               
Sbjct: 318 IIRDSAFSLLGILDDILDFSKIEAGKLQMDNSVFSVAETIEEVAR--------------- 362

Query: 470 IADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP--FAKEGLKQKSK 527
                   V+  V R R                 K+ ++L V P+ P     + ++ +  
Sbjct: 363 --------VLSSVARKR-----------------KLDLQLAVAPDIPNNLVGDAVRVRQV 397

Query: 528 AYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLE 587
            Y   ++A+K       + T   + GF                     V     + ++  
Sbjct: 398 LYNLCSNAIK------FTTTDDARRGF---------------------VKISVEVAQNTS 430

Query: 588 ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
               +R  V D G G+ +  L  +F  ++Q      R+YGGTGLGL+ICK LVELM G +
Sbjct: 431 EHYTLRFTVTDNGKGMTQAQLREIFNPFIQAEGSITREYGGTGLGLSICKSLVELMLGSI 490

Query: 648 TVTSKVHCGSTFTFILPYQV 667
            V+S +  GS F   LP+ V
Sbjct: 491 HVSSDIGMGSEFVVELPFSV 510



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 19/165 (11%)

Query: 836  KPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA 895
            KP ++  S S +     E        +LLVEDN +N  V    +  LG+ ++V  NG E 
Sbjct: 641  KPKKLKPSRSLNKYLNVEDARAANKLVLLVEDNVLNQQVLTDQLHLLGYGVEVAENGEEG 700

Query: 896  VHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955
            +   Q  +Y +IL D+ MP M G      IR        + A +A    A P        
Sbjct: 701  LVRWQQAHYPIILTDLHMPKMSGYDMVAKIR--------EEAEQAEDINAQPY------- 745

Query: 956  KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                IIA+TANAL    + C A GM+ +++KPV    L+  L+ +
Sbjct: 746  ----IIAITANALKGERDRCLAAGMNDYITKPVELNVLEATLDTW 786


>gi|334340222|ref|YP_004545202.1| PAS sensor protein [Desulfotomaculum ruminis DSM 2154]
 gi|334091576|gb|AEG59916.1| PAS sensor protein [Desulfotomaculum ruminis DSM 2154]
          Length = 1276

 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 145/258 (56%), Gaps = 31/258 (12%)

Query: 258 DILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKS 317
           +I+GK   +I  G  +++ Q+  ++  E+  P +  +TF T +F     ++ ++P++ + 
Sbjct: 451 NIIGKKLWDIHQGDTLEKVQELIKKYQEQ--PNQPPLTF-TRIFCGHDVIMNIQPIY-RD 506

Query: 318 GETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLAT 376
               G+  M +DVT+    + +  + RE                 I E+  +AK + LA 
Sbjct: 507 ANYDGILLMVIDVTEVAESKRQAEQARE-----------------IAEKASQAKSEFLAN 549

Query: 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
           MSHEIR+P+ G++  AE+L+   L++EQ++ + ++   G+ ++ LINDILDLSK+ESG +
Sbjct: 550 MSHEIRTPMNGILGFAEVLAQQGLNQEQQESVKIIRQCGEQLMDLINDILDLSKIESGKL 609

Query: 437 KLEAAKFRPREVVKHVLQTAAASLQKILM---LEGDIADD--VPIEVIGDVLRIRQILTN 491
            LE   F  R+++   +      ++ ILM   +E  I+ D  +P  + GD  RIRQIL N
Sbjct: 610 ILEETVFSLRKMIYETVNV----IEPILMEKNVEMKISIDPHLPDYLKGDSFRIRQILNN 665

Query: 492 LISNAIKFTPEGKVGIKL 509
           L+SNA KFT EG V +K+
Sbjct: 666 LLSNAAKFTHEGCVEVKV 683



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 25/147 (17%)

Query: 855  KPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCM 913
            K K  P  +LLVEDN  N  + + ++   G+ + +V NG EA+ A+    YD++LMD+ M
Sbjct: 1047 KMKKGPVNVLLVEDNSFNQKLIEHLLTGDGYKVTMVENGQEALAALDQGEYDIVLMDMQM 1106

Query: 914  PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE 973
            PVMDG +ATR IR+ E                         +K++P+IA+TA+A+    E
Sbjct: 1107 PVMDGYEATRQIRNME------------------------KYKKLPVIALTAHAMKGDCE 1142

Query: 974  ECFANGMDSFVSKPVTFQKLKECLEQY 1000
            +C + G D +++KPV    L + ++++
Sbjct: 1143 KCLSAGCDDYLAKPVNKDMLIKTIKKF 1169



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 47/77 (61%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP + L  +F  + Q      RKYGGTGLGL I + L ELMGG+L V S+   
Sbjct: 703 VSDTGIGIPSDKLAEIFETFTQADGSTTRKYGGTGLGLTISRSLTELMGGQLQVQSEFKK 762

Query: 656 GSTFTFILPYQVSPIEE 672
           GS F+  LP  +  +E+
Sbjct: 763 GSQFSLTLPVALVHVEK 779


>gi|430747804|ref|YP_007206933.1| PAS domain-containing protein [Singulisphaera acidiphila DSM 18658]
 gi|430019524|gb|AGA31238.1| PAS domain S-box [Singulisphaera acidiphila DSM 18658]
          Length = 912

 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 2/167 (1%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           K  E EL       E   RAK   LA +SHEIR+P+  ++ M E+  +T L  EQR+ L 
Sbjct: 236 KHAEEELRLAKETAEAANRAKDAFLANVSHEIRTPMNAILGMTELTLDTPLTDEQRKYLA 295

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEG 468
            + +S D +L +IND+LD SK+E+G ++L+ A F  R V+   L+  A  + +K L L  
Sbjct: 296 TVKTSADALLSVINDLLDFSKIEAGKLELDFADFSLRRVLGETLRALAFRAHRKGLELVC 355

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
            I  DVP  +IGD  R+RQ+L NLI NAIKFT +G++ +++  VP P
Sbjct: 356 QIQPDVPDALIGDAGRLRQVLLNLIGNAIKFTEQGEIVVRVETVPAP 402



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 33/197 (16%)

Query: 816  REMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPE---TKPKP--------KPKILL 864
            R +   + T +P +  E+ E   R+   P+ +    P    T P P        + ++L+
Sbjct: 603  RTLGIAAYTMKPVQQEELLEIIHRVLSRPTPAEPAAPTATTTSPVPVDPAESGSRLRVLV 662

Query: 865  VEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRL 924
             EDN +N  + + ++++ GH + VV +G+EA++A+   ++DL L+DV MP  DG +    
Sbjct: 663  AEDNPLNQELVEHLLRRRGHDVVVVGDGLEALNAIDRHDFDLSLLDVHMPEFDGFQVIEA 722

Query: 925  IRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984
            +R  E                  S+G     + +P+IAMTA A+    E C   GMD ++
Sbjct: 723  VRQREQ-----------------STG-----EHLPVIAMTALAMKGDRERCLEAGMDDYL 760

Query: 985  SKPVTFQKLKECLEQYF 1001
            +KP+    L   +++  
Sbjct: 761  AKPIRASALFAVIDRVL 777


>gi|39996387|ref|NP_952338.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing [Geobacter sulfurreducens PCA]
 gi|39983267|gb|AAR34661.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing [Geobacter sulfurreducens PCA]
          Length = 772

 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 150/315 (47%), Gaps = 23/315 (7%)

Query: 200 VTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHE 256
           +  + +  S  + + + L+    FL  +L  AP+ +     +   R   N +     +  
Sbjct: 137 ILGIARDVSERKRMEESLRSTSEFLDTILDEAPLPIYITSVDGTLRLANNAWERETGIPR 196

Query: 257 EDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSK 316
              +G+   E+F  A   +  +  R V+E    A ++  F     G + F     P+   
Sbjct: 197 NAAVGRRLNELFPAAMCDQFSEINRRVVESNATAVQD-EFLDFGAGVRVFHTIKFPLRDA 255

Query: 317 SGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLA 375
           +G  + V  + +D+TD    R KM             E EL        ++ RAK   LA
Sbjct: 256 AGGVVDVGGISIDITD----RSKM-------------EGELRAAHAAAVDSSRAKIDFLA 298

Query: 376 TMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGV 435
            MSHEIR+P+ GV+   E+L  T LD  QR+   +   S + +L +IN +LD SK+ES  
Sbjct: 299 NMSHEIRTPMNGVIGTLELLRETDLDPRQREYAEIARESAESMLAVINMVLDYSKIESHQ 358

Query: 436 MKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLIS 494
           + LEA  F  RE V+  ++   A + +K +M+  D+   VP  V+GD +R  QI+ NL+ 
Sbjct: 359 LVLEAVPFAIREAVERAVKPFRAVAARKGVMVAADVPPHVPETVVGDPVRFSQIVANLVG 418

Query: 495 NAIKFTPEGKVGIKL 509
           NA+KFT +G + ++L
Sbjct: 419 NAVKFTEQGAITVQL 433



 Score =  103 bits (257), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 23/169 (13%)

Query: 833  MQEKPDRISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNN 891
            ++  PD I+  P ++   V E     +P  +LLV+D+ ++  V   +++  GH +    +
Sbjct: 518  LRGAPDDIASPPPATGWAVAEKSVAVRPLSVLLVDDSAVSRKVVSLLLESDGHRVTFAGD 577

Query: 892  GVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951
            GVEA+ A+  + +DL+LMDV MPVMDG +A R IR+ E  G                   
Sbjct: 578  GVEALAAIGREAFDLVLMDVQMPVMDGFEAMRAIRAGEAAGG------------------ 619

Query: 952  SNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                 R+PIIA+TA AL+   E C   G D +++KPV F +L+  + ++
Sbjct: 620  ----ARLPIIALTARALAGDRELCLEAGADDYLAKPVNFSELRRVISRH 664



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 50/86 (58%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           + C V DTG GI      T+F  ++Q      R +GGTGLGLAI ++LVE M G ++V S
Sbjct: 445 VSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGVISVAS 504

Query: 652 KVHCGSTFTFILPYQVSPIEENSDDP 677
           +   GSTF+F +  + +P +  S  P
Sbjct: 505 EPGMGSTFSFRVRLRGAPDDIASPPP 530


>gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP6]
 gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP6]
          Length = 808

 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 109/182 (59%), Gaps = 4/182 (2%)

Query: 328 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLT 386
           MD T  ++   +  KL E+I  +K  E +L ++    E    AK + LA MSHEIR+PL 
Sbjct: 380 MDRTAMLKAANR--KLEEDILERKKIEEDLRRSKEAAEAATNAKSEFLANMSHEIRTPLN 437

Query: 387 GVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446
            V+ +  IL  T L+REQR  + ++ SSGD +L +INDILD SK++SG M+LE   F  +
Sbjct: 438 AVIGLTGILLGTDLNREQRDHMEIIRSSGDALLAIINDILDFSKIDSGKMELEVQPFDVK 497

Query: 447 EVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           + ++  +   A   Q K L L  DI + +P  ++ D  R+RQIL N++ NA+KFT  G+V
Sbjct: 498 KSIEDAVDLMAPVAQEKGLTLGYDIEESIPKTIVSDPTRLRQILVNILGNAVKFTSSGEV 557

Query: 506 GI 507
            I
Sbjct: 558 RI 559



 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 77/142 (54%), Gaps = 25/142 (17%)

Query: 856 PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
           P+   +IL+ EDN IN  V K M+ +LG+  DV  NG+E + A+  Q+YD+ILMD+ MP 
Sbjct: 669 PQRPLRILVAEDNIINQKVIKKMLHKLGYRADVAANGLEVLVALDRQDYDVILMDIQMPE 728

Query: 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
           MDGL A R IR    T              +P            IIA+TA A+    E+C
Sbjct: 729 MDGLDAARKIRETRPT--------------LPK-----------IIAITAFAMEGDKEKC 763

Query: 976 FANGMDSFVSKPVTFQKLKECL 997
             +GMD ++SKPV  ++L+  L
Sbjct: 764 IDSGMDGYISKPVNLEELRAIL 785



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 4/90 (4%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTGIGIP   +  LF+ + QV     R+YGG GLGLAI K+LVELM G +   S
Sbjct: 573 IHFAVMDTGIGIPAEKMNCLFQSFCQVEPCTTRRYGGAGLGLAISKRLVELMDGSIWAES 632

Query: 652 KVHCGSTFTFILPYQVSPIEENSDDPDDLS 681
           +   GSTF F     +  +E  S  P +L+
Sbjct: 633 EEGKGSTFHF----TIKAMEALSPPPGELA 658


>gi|330792802|ref|XP_003284476.1| hypothetical protein DICPUDRAFT_148245 [Dictyostelium purpureum]
 gi|325085619|gb|EGC39023.1| hypothetical protein DICPUDRAFT_148245 [Dictyostelium purpureum]
          Length = 1555

 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 16/244 (6%)

Query: 319 ETIGVNYMGMDVTDQVRKREKMAKLRE-EIAVQKAKETELNKTIHITEETMR-------A 370
           +TIG+   G + T QV+   K  K+   +  V    +T   K + I ++ +R       A
Sbjct: 613 DTIGIKPCGAEFTVQVKIENKYDKVSSSDFDVVSIIDTTARKKLIIADQQLRRAEEINDA 672

Query: 371 K-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLS 429
           K + L T+SHE+R+P++G++S   IL  + +D  QR+ LG +  S D +L LI DILD S
Sbjct: 673 KIRFLTTVSHEVRTPISGILSSVGILDESLVDSNQREYLGFIKDSADYLLDLITDILDFS 732

Query: 430 KVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQI 488
           K+E+G M+LE  +F   ++++  +     +   + + +   +  DVPI +IGD  RI+Q+
Sbjct: 733 KIEAGKMELERVEFNLLKMLEDSINIVYRNAHDRGINVIHFVEPDVPIFLIGDSHRIKQV 792

Query: 489 LTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSAT---DAVKEEKHQPKS 545
           L N +SNAIKFT +G+V +K+ +V +     EG+K       S     D  +E+  QP  
Sbjct: 793 LLNYLSNAIKFTSKGQVMVKVSLVEK---TNEGIKVMFSVEDSGVGIKDEFQEQLFQPFH 849

Query: 546 QTAS 549
           Q  S
Sbjct: 850 QVGS 853



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 19/167 (11%)

Query: 839  RISQSPSSSSAEVPETKP--KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
            R + S   S+   P   P  + + KILLV+DN +N+ +    +K  G+  D+  +G +A+
Sbjct: 1378 RFADSSDGSNNNSPNIVPIDRNQYKILLVDDNIVNIKIFSKYIKDGGYQHDIAMDGNQAI 1437

Query: 897  HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
             A +   Y +I MD  M  MDG +AT +IR F              E+++ +     H+K
Sbjct: 1438 EATKKNYYPIIFMDCHMDPMDGYQATEIIRKF--------------EKSLVNCHGKIHYK 1483

Query: 957  RIPIIAMTA---NALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            +  IIA+TA     +S   ++C   GMD F+ KP+  + + + +E++
Sbjct: 1484 KSTIIALTALDLGGMSSGKDKCLDIGMDDFLQKPIKPKTIIDTIEKH 1530



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
           S+ E     + +   V D+G+GI +     LF+ + QV +   R+Y GTGLGL+I K+L 
Sbjct: 814 SLVEKTNEGIKVMFSVEDSGVGIKDEFQEQLFQPFHQVGS--LRQYLGTGLGLSISKRLT 871

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQVSP 669
            +MGG +   S    GSTF F   +Q++P
Sbjct: 872 AMMGGEVGFRSTFGVGSTFYFTSLFQINP 900


>gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1135

 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 142/258 (55%), Gaps = 26/258 (10%)

Query: 260 LGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVE----PVFS 315
           +GK+D + FS      ++  +  V++  LP    I  E  +  S   + ++     P+ S
Sbjct: 334 IGKSDTDFFSAEHAAIARKDEEYVMQTRLPL---IGKEERVVWSDGHIRWMSTTKLPLIS 390

Query: 316 KSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-ML 374
            +G+ IG   +  D+T          KL E+ A+++AK+          E   RAK   L
Sbjct: 391 PAGDVIGTYGVSRDITPM--------KLAEQ-ALREAKDA--------AEAANRAKSDFL 433

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           A MSHEIR+PL  ++ M E++ +T L   QR  L +++ SG+ +L +INDILD SK+E+G
Sbjct: 434 ANMSHEIRTPLNAIIGMTELVMDTDLKVAQRDYLRMVLESGESLLGIINDILDFSKIEAG 493

Query: 435 VMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493
            + ++   FR R+ +   +++ +  + +K L L   ++ DVP EV GD +R+RQ++ NL+
Sbjct: 494 RLHVDEQPFRLRDSLGDTMKSLSNRAHRKKLELAFHVSPDVPDEVRGDAVRVRQVIINLL 553

Query: 494 SNAIKFTPEGKVGIKLYV 511
            NA+KFT  G+V + + V
Sbjct: 554 GNALKFTERGEVVLDVSV 571



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 25/157 (15%)

Query: 844 PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
           P +S+  VPE     + +ILL ED+  N  +A  ++++ GH + V +NG+EA+   + ++
Sbjct: 804 PMASAMAVPERSANSR-RILLAEDSLANQKLALGLLERWGHRVVVASNGIEAIERYRSES 862

Query: 904 YDLILMDVCMPVMDGLKATRLIRSFE-DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
           +DLILMDV MP +DG +AT  IR  E  TG                       + IPI+A
Sbjct: 863 FDLILMDVQMPELDGNEATMAIREIERRTG-----------------------EHIPIVA 899

Query: 963 MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
           MTA+AL    E+C   GMD ++ KP+  ++L + +EQ
Sbjct: 900 MTAHALQGDREQCLKAGMDDYLMKPIRARQLFQMIEQ 936



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 48/74 (64%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V +   V DTGIGI ++   ++F  + Q  +   R+YGGTGLGLAI  +LVELM G++ V
Sbjct: 579 VTLHFKVQDTGIGIAKDKFESIFEAFEQADSSTTRRYGGTGLGLAISARLVELMQGKIWV 638

Query: 650 TSKVHCGSTFTFIL 663
            S+V  GSTF F L
Sbjct: 639 ESEVGQGSTFHFTL 652


>gi|445497351|ref|ZP_21464206.1| signaling protein [Janthinobacterium sp. HH01]
 gi|444787346|gb|ELX08894.1| signaling protein [Janthinobacterium sp. HH01]
          Length = 1387

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 104/169 (61%), Gaps = 2/169 (1%)

Query: 350 QKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           Q+  E + ++   +    M+A Q  AT+SHE+R+PL GVV M ++L  T+L + Q++ + 
Sbjct: 253 QREAELKDSRDAAVNMAQMKA-QFAATVSHEVRTPLNGVVGMLDMLKETRLTQRQQEFVD 311

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEG 468
           V  +S   ++ LIN+ILD SK+E+G +KLE  +F    ++  V +  A  + QK + L  
Sbjct: 312 VAWNSSRTLIALINNILDFSKMEAGKLKLEETEFCLGTLLSEVTELVARPAQQKGVALNW 371

Query: 469 DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPF 517
            IA DVP  + GD LR+RQIL NLI NAIKFT  G+V I + ++P   F
Sbjct: 372 TIAPDVPARIAGDSLRLRQILINLIGNAIKFTDRGEVAIAVTLLPGAAF 420



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 82/155 (52%), Gaps = 26/155 (16%)

Query: 852  PETKPKPKP----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLI 907
            P T   P P    ++L+ EDN+ N MVA  M+   G   +   +GVEAV A Q + +DLI
Sbjct: 532  PLTPAAPAPERQFRVLVAEDNRTNQMVAAGMLAMNGCVCEFAADGVEAVRAAQRERFDLI 591

Query: 908  LMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967
            LMD  MP MDG +AT  IR                E AM         +R P++AMTAN 
Sbjct: 592  LMDCSMPEMDGYEATAHIRL--------------AELAMG--------RRTPLVAMTANT 629

Query: 968  LSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                AE+C A GMD +++KP+T  +L+  LE++ P
Sbjct: 630  QVGDAEKCLAAGMDDYLAKPITLVELRHKLEKWLP 664



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 46/67 (68%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIG+ E     LF  Y+Q      R+YGGTGLGLAICKQLVEL+GG + V S+  
Sbjct: 425 EVRDTGIGMSEEVRRHLFEAYVQPDPSTTRRYGGTGLGLAICKQLVELLGGHIAVDSEAG 484

Query: 655 CGSTFTF 661
            G+TFTF
Sbjct: 485 RGTTFTF 491



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 30/153 (19%)

Query: 849 AEVPETKPKP------KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
           AE+ +T P        +P++L+V+D++      +  +++ G  ++   +G +A+  +   
Sbjct: 801 AEISDTAPATPQTGDDRPQVLVVDDDRSTRSTLRHTLQRDGFRVEEAADGAQALAMLARF 860

Query: 903 NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
             D+ILMD  MPVMDG  A   +                  Q +P++G+      +P++ 
Sbjct: 861 QPDVILMDAMMPVMDGFTACARM------------------QELPNAGA------VPVLM 896

Query: 963 MTANALSESAEECFANGMDSFVSKPVTFQKLKE 995
           +TA   + S E  FA G   ++ KP+ +  L +
Sbjct: 897 ITALQDNSSVERAFAAGASDYIPKPIHYAVLSQ 929


>gi|410629876|ref|ZP_11340571.1| two-component system, unclassified family, sensor histidine kinase
            and response regulator [Glaciecola arctica BSs20135]
 gi|410150499|dbj|GAC17438.1| two-component system, unclassified family, sensor histidine kinase
            and response regulator [Glaciecola arctica BSs20135]
          Length = 1065

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/147 (46%), Positives = 86/147 (58%), Gaps = 21/147 (14%)

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
            P+ K +IL+VEDN IN MVA+SM++Q G   DV  NG EA+ A++   YDL+ MD  MPV
Sbjct: 934  PQFKARILVVEDNVINQMVAQSMLEQYGIQSDVAANGEEALKALENFPYDLVFMDCQMPV 993

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            MDG +ATR IRS                   P S   N  K IPIIAMTAN +    E+C
Sbjct: 994  MDGFEATRSIRS-------------------PESKVRN--KAIPIIAMTANTMQGDREKC 1032

Query: 976  FANGMDSFVSKPVTFQKLKECLEQYFP 1002
             A GM+ F+SKPV   K ++ LE + P
Sbjct: 1033 IAAGMNDFISKPVETLKFQQSLELWLP 1059



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 134/266 (50%), Gaps = 31/266 (11%)

Query: 310 VEPVF---SKSGET----IGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
           +E VF    K G T    +GV+ + +D       R  +  +R+     +AK T L K   
Sbjct: 488 IERVFIGQRKDGSTFPMELGVSELIID-----NSRHFVGIIRDITERHQAK-TALKKAKD 541

Query: 363 ITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQL 421
             E+  +AK + LA MSHEIR+P+ GV+ M  +L +T L+ EQ     ++ SS   +L +
Sbjct: 542 SAEQANQAKSEFLANMSHEIRTPMNGVIGMTSLLLDTPLNPEQHNFAKIVKSSAKSLLSI 601

Query: 422 INDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIE--- 477
           INDILD SKVE+G++++E+  F    ++    ++ A  + +K L L   I    P++   
Sbjct: 602 INDILDFSKVEAGMLEMESIDFDMDLLMNEFGRSIAVRAHEKGLEL---ICPANPVQHKC 658

Query: 478 VIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATD--- 534
              D  RIRQIL NL+ NAIKFT +G+V +   V       ++    ++K     TD   
Sbjct: 659 YSADPGRIRQILNNLVGNAIKFTEQGEVAVYYKV-------QQQTDARTKVLIEVTDTGI 711

Query: 535 AVKEEKHQPKSQTASDQNGFHDKKHG 560
            +  E+     +  S  +G   +KHG
Sbjct: 712 GLSAEQQAGLFERFSQADGSTTRKHG 737



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 46/77 (59%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           +A   +  +V DTGIG+       LF ++ Q      RK+GGTGLGLAI KQLVELMGG 
Sbjct: 697 DARTKVLIEVTDTGIGLSAEQQAGLFERFSQADGSTTRKHGGTGLGLAISKQLVELMGGE 756

Query: 647 LTVTSKVHCGSTFTFIL 663
           + + S    GSTF F L
Sbjct: 757 IGIKSTHGKGSTFWFTL 773


>gi|86137741|ref|ZP_01056317.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85825333|gb|EAQ45532.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 810

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/202 (38%), Positives = 115/202 (56%), Gaps = 8/202 (3%)

Query: 321 IGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSH 379
           +GVN   +DVT  V   EK   L E  A    +  +L       E   RAK + LA MSH
Sbjct: 392 LGVN---LDVTRDVHLHEK---LIEANATLLQRNNDLTDAKVAAESADRAKSEFLANMSH 445

Query: 380 EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
           EIR+P+ G++ MAE++S   L  E+R+ L  +  S + +L++INDILDLS++E+G + + 
Sbjct: 446 EIRTPMNGILGMAELMSEADLGAEEREYLTTIQDSSNALLKIINDILDLSRLEAGRLAIS 505

Query: 440 AAKFRPREVVKHVLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
              F  R  V   +      + +K L +  D A+++P +V GD  R+RQIL NLI NA+K
Sbjct: 506 PVDFDLRNCVAGAVNLLRPKAREKGLWMSVDFAENLPEQVYGDDGRLRQILVNLIGNAVK 565

Query: 499 FTPEGKVGIKLYVVPEPPFAKE 520
           FT EG V +K+    + P++ E
Sbjct: 566 FTSEGGVDVKVTCDEQDPYSLE 587



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 25/145 (17%)

Query: 853 ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVC 912
           +T      ++LL EDNK N ++ +  +  LG  +   +NG +AV   Q +  D+ILMD+ 
Sbjct: 676 DTAALAGCRMLLAEDNKTNRLLVQKYLSDLGIILSEAHNGRQAVAMCQQEQPDIILMDMA 735

Query: 913 MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
           MP +DGL+ATR IR+                          + K+  I+A+TANA     
Sbjct: 736 MPELDGLEATREIRAL-------------------------NIKQPVIVALTANAFESDR 770

Query: 973 EECFANGMDSFVSKPVTFQKLKECL 997
           E C A GMD F+ KP+    L + L
Sbjct: 771 EACLAAGMDYFLQKPIRKSVLLQTL 795



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI ++    +F ++ Q  A   R +GGTGLGL I   L + MGG + +      
Sbjct: 590 VEDTGIGISDSQAEYIFDRFAQADAAITRAFGGTGLGLTISSILAKRMGGGIELCRAREE 649

Query: 656 GSTF 659
           GS F
Sbjct: 650 GSCF 653


>gi|345871211|ref|ZP_08823158.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
 gi|343920621|gb|EGV31350.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
          Length = 1530

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 116/213 (54%), Gaps = 17/213 (7%)

Query: 317 SGETIGVNYMGMDVTDQVRKR---------------EKMAKLREEIAVQKAKETELNKTI 361
           SG+ IG+   G DVT+Q R                 E+  +L+ EIA +K  E  L    
Sbjct: 731 SGDVIGLLATGQDVTEQKRAETEIQALNAGLENRVAERTTELQAEIAERKRIEQVLQAAK 790

Query: 362 HITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQ 420
              E   RAK + LA MSHEIR+P+  ++ M  +   TKLDR+QR  +  +  S D +L 
Sbjct: 791 SEAEAGNRAKSEFLANMSHEIRTPMNAIIGMTHLALQTKLDRKQRNYIEKVSHSADALLG 850

Query: 421 LINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVI 479
           +INDILD+SK+E+G + +E   F   +++  +         +K L L  D+  D+P+ +I
Sbjct: 851 IINDILDVSKIEAGKLAIERIDFNLEDILGTLATVVGLKADEKGLELVFDLPQDLPLALI 910

Query: 480 GDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           GD LR+ QIL NL +NA+KFT  G++ I   V+
Sbjct: 911 GDPLRLGQILINLGNNAVKFTQHGEIVIGAEVL 943



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 26/164 (15%)

Query: 840  ISQSPSSSS--AEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
            IS+ PS+ +  A   +       K+L+VEDN +N  + ++++   G S+++ +NG EA+ 
Sbjct: 1171 ISERPSARNRIATADDLAKLSGAKVLIVEDNDVNQELVQALLCSNGLSVEIADNGEEALD 1230

Query: 898  AVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR 957
             +  + +D +LMD+ MPVMDG  ATR IR                  A P       F+ 
Sbjct: 1231 WLDREPFDGVLMDLQMPVMDGYTATRAIR------------------AQP------RFRD 1266

Query: 958  IPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            +PI+A+TAN ++   E   A GM+  ++KP+    L   L ++ 
Sbjct: 1267 LPILAITANVMTGERERAIAAGMNDQIAKPIDVPTLFATLAKWI 1310



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 40/66 (60%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIG+P     +LFR + Q      R++GGTGLGL+I K L E MGG + V S    
Sbjct: 956  VRDTGIGLPPEQQRSLFRAFSQADTSTTRQFGGTGLGLSISKHLTERMGGEIWVESTHGV 1015

Query: 656  GSTFTF 661
            GSTF F
Sbjct: 1016 GSTFHF 1021



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 26/142 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNG---VEAVHAVQCQNYDLILMDVCMPVMD 917
            ++L+V+DN        +M+K +G  +D  ++G   +E + A     Y L+L+D  MP +D
Sbjct: 1046 RVLVVDDNATARHTLSTMLKAIGPQVDEADSGEAALECLRAAGDDPYGLVLLDWKMPRID 1105

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G+   R I    DTG             +P+           +I +TA    E+      
Sbjct: 1106 GIATARAILESTDTG------------PLPT-----------LIMVTAYGREEAMNAAKD 1142

Query: 978  NGMDSFVSKPVTFQKLKECLEQ 999
             G+  F++KPVT   L + + Q
Sbjct: 1143 VGISGFLTKPVTPSSLLDAIMQ 1164


>gi|386826845|ref|ZP_10113952.1| PAS domain S-box [Beggiatoa alba B18LD]
 gi|386427729|gb|EIJ41557.1| PAS domain S-box [Beggiatoa alba B18LD]
          Length = 1129

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 12/206 (5%)

Query: 309 YVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETM 368
           Y+ P++ K G+ I +     D+T      E++ K  ++   ++AK           E+  
Sbjct: 557 YLHPIYDKQGKIIAIQGATQDITLHKEAEERLKKAIDD--AERAKSE--------AEQAN 606

Query: 369 RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
            AK   LA MSHEIR+P+ GV+ M E+L +T L+ +Q   L  + +SG+ +L +INDILD
Sbjct: 607 YAKGAFLANMSHEIRTPINGVLGMVELLRSTPLNEQQHHYLERVHTSGETLLTVINDILD 666

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIR 486
            SK+E+G + LE   F   E++    +    S+Q K L          P  + GD +R+R
Sbjct: 667 FSKIEAGKLALENIDFNFHELIADTAEFFNLSIQSKGLKFNKAFPPAFPTLLKGDPIRLR 726

Query: 487 QILTNLISNAIKFTPEGKVGIKLYVV 512
           QIL NL+SNAIKFT  G++ +K+ V+
Sbjct: 727 QILNNLLSNAIKFTETGEISLKITVL 752



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 21/145 (14%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            P  ++LL EDN+IN  VA S + +LG    VV NG EA+  +     D++ MD  MP+MD
Sbjct: 861  PVTRVLLAEDNEINQEVASSFLAKLGCQTYVVENGKEALDFLAKNPIDIVFMDCYMPIMD 920

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G  AT   R+ E +            Q  P          +PIIA+TANA+    E C +
Sbjct: 921  GFTATEQRRAAEQS------------QQKP---------HLPIIALTANAMLGDKERCLS 959

Query: 978  NGMDSFVSKPVTFQKLKECLEQYFP 1002
             GMD ++SKP   Q L+  L+++ P
Sbjct: 960  AGMDDYISKPFNMQHLRNALQRWLP 984



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 55/87 (63%)

Query: 584 EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
           ED E  + +  +V DTGIGI  +    LF+ + Q  +   RKYGGTGLGLAI ++L+++M
Sbjct: 753 EDKERHILLHLEVIDTGIGISTDVGNRLFKPFSQADSTTTRKYGGTGLGLAITRRLLQMM 812

Query: 644 GGRLTVTSKVHCGSTFTFILPYQVSPI 670
              +++TSKV  GST  F L ++ S +
Sbjct: 813 NSEISLTSKVGQGSTVWFNLRFEKSTL 839


>gi|356561130|ref|XP_003548838.1| PREDICTED: histidine kinase 1-like [Glycine max]
          Length = 1197

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 145/299 (48%), Gaps = 47/299 (15%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEIL-SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSK 430
           Q LA MSHE+R+P+  V+ + +IL S+ +L  EQ   +  +      +L+L+N+ILDLSK
Sbjct: 486 QFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSK 545

Query: 431 VESGVMKLEAAKF-RPREVVKHV----LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           VESG + LE A+F   RE+   V    +Q    +++ +L    D++DD+P  V GD  R+
Sbjct: 546 VESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVL----DLSDDMPKLVRGDSARV 601

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKS 545
            QI  NLI+N+IKFT  G + ++            G  +   +    T+   E+K    S
Sbjct: 602 VQIFANLINNSIKFTLSGHIILR------------GWCENPNSCSDNTNFPLEKKKSRCS 649

Query: 546 Q-TASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIP 604
           Q T + Q+  H K+                      + + D +  +W   D  DTG GI 
Sbjct: 650 QKTRAKQHENHAKR----------------------TSNRDNKIILWFEVD--DTGCGID 685

Query: 605 ENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
            +   ++F  + Q      R +GGTGLGL I + LV  MGG + V  K   G+     L
Sbjct: 686 PSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLCL 744



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 50/179 (27%)

Query: 841  SQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            ++  SSSS  V   K     +ILL ED  +   VA  M++++G  +  V +G +AV A+ 
Sbjct: 1027 TRRASSSSRAVIGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDALN 1086

Query: 901  ----------------------------CQNYDLILMDVCMPVMDGLKATRLIRSFEDTG 932
                                        C  YDLILMD  MP MDG +AT+ IR  E   
Sbjct: 1087 GMPGVEDCIRESLLKERNTRSSQTEILGCPPYDLILMDCQMPKMDGYEATKAIRKSE--- 1143

Query: 933  NWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
                             G+  H   IPI+A+TA+A+S    +C   GMD++++KP+ F+
Sbjct: 1144 ----------------VGTDLH---IPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFK 1183


>gi|374300147|ref|YP_005051786.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553083|gb|EGJ50127.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 938

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 118/215 (54%), Gaps = 20/215 (9%)

Query: 293 EITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKA 352
           + ++ T L G      ++ P FS  GE      +  DVT                   KA
Sbjct: 500 DCSYRTRL-GVAHLSTFIIPEFSSDGEVESALVLARDVT-----------------ALKA 541

Query: 353 KETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVM 411
            E EL +   I EE  RAK + LA MSHEIR+PL G++ M E+  +  L+   R  L + 
Sbjct: 542 LEHELRQAKEIAEEASRAKSEFLAHMSHEIRTPLNGMLGMTELAESATLEERTRHFLHLA 601

Query: 412 ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDI 470
             SG+ +L LINDILDLS++E+G +++E   F  R  V+ + ++ +  + QK L+LE  +
Sbjct: 602 RESGNHLLGLINDILDLSRIEAGELRIERYGFDLRVEVRLLAESMSVLAEQKGLLLECRL 661

Query: 471 ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
            + +P +++GD  R+RQIL NL+ NA+KFT +G V
Sbjct: 662 DELIPNDLLGDAGRLRQILVNLVGNALKFTRQGGV 696



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 82/142 (57%), Gaps = 21/142 (14%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KILL EDN+IN     ++++  GHS+ VV NG+EAV  ++ + YDLILMD  MPVMDG++
Sbjct: 815  KILLAEDNEINQFFVSTLLEDRGHSVTVVGNGLEAVQRLKSERYDLILMDARMPVMDGVE 874

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR+IR+            AG++ A             PIIA+TA  L    E   A GM
Sbjct: 875  ATRIIRN---------NPPAGVDSA------------TPIIALTAYTLQGDRERLLAEGM 913

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D++++KPV   +L   L + FP
Sbjct: 914  DAYLAKPVDSDELDRMLARLFP 935



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 2/70 (2%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI +    T+F  + ++  D++ +  GTGLGL+IC++LVE+MGGR+ + S+V  
Sbjct: 719 VSDTGIGIDKATFRTIFENFTRL--DNSAEQVGTGLGLSICRRLVEMMGGRIWLESEVGV 776

Query: 656 GSTFTFILPY 665
           GSTF   LP+
Sbjct: 777 GSTFHVSLPF 786


>gi|407778474|ref|ZP_11125738.1| hybrid sensory histidine kinase [Nitratireductor pacificus pht-3B]
 gi|407299845|gb|EKF18973.1| hybrid sensory histidine kinase [Nitratireductor pacificus pht-3B]
          Length = 824

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 8/167 (4%)

Query: 349 VQKAKETELNKTIHITEETMRAK-------QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           V KA +   +  I +  E ++A+       + LA MSHEIR+P+ GV+ MAE+L+ T LD
Sbjct: 260 VSKAHQDLHDANISLASEKIKAQSADRTKSEFLANMSHEIRTPMNGVMGMAELLARTNLD 319

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL- 460
           + Q   + V++ SG  +L +INDILD SK+++G +KL+ A F+  E ++ V    +  + 
Sbjct: 320 QRQAMFVDVIVKSGTALLTIINDILDFSKIDAGQLKLDTAPFKLGEAIEDVAALVSTRVA 379

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           +K L L   +  D+P+  IGDV R RQ+ TNL+ NA+KFT  G V I
Sbjct: 380 EKDLELIVRVDPDLPLSFIGDVGRFRQVATNLVGNAVKFTERGHVLI 426



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 53/81 (65%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           + +  +   V DTGIGIP++ L  +F K+ QV +   R++ GTGLGLAI  +LVELMGG 
Sbjct: 434 DGSALVTISVEDTGIGIPQDKLDVVFEKFAQVDSSSTRRHEGTGLGLAIASRLVELMGGS 493

Query: 647 LTVTSKVHCGSTFTFILPYQV 667
           +   S++  GSTF F +P +V
Sbjct: 494 MQAKSEIGKGSTFAFTIPLEV 514



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 22/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN++N +V   ++  LG    +  NG  AV   +     ++LMDV MP M+G +A
Sbjct: 698  VLVAEDNEVNQLVFSQVLDGLGLRYRIAGNGKTAVEMHRAFRPKIMLMDVSMPEMNGYEA 757

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T  IR  E                   + + +H    PII +TA+AL    E+C   GMD
Sbjct: 758  TGAIRQTE-------------------AATGDH---TPIIGITAHALKGDREKCLDAGMD 795

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP++ QKL + +E++ 
Sbjct: 796  DYLSKPISPQKLADMIERWM 815


>gi|242783972|ref|XP_002480293.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218720440|gb|EED19859.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1900

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)

Query: 346  EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
            +I  +K  E ELNK +      M +K +  + MSHEIR+PL G++     + +T LD EQ
Sbjct: 1192 DINDRKLLERELNKAMQKLNREMESKTKFFSNMSHEIRTPLNGILGTIPFILDTTLDHEQ 1251

Query: 405  RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKI 463
            R++L  + +S   + +L+++ILD+S+VE+G M +  + F  R V++ V+ T A  ++ K 
Sbjct: 1252 RRMLDTIQNSSTNLRELVDNILDVSRVEAGKMNMVKSWFHLRSVLEDVIDTVAPRAIDKG 1311

Query: 464  LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
            L +   +  DVP  VIGD  RIRQ+L NL+ NA+KFTP G++  +  V  EP
Sbjct: 1312 LEINYLMDTDVPDMVIGDRFRIRQVLINLMGNAVKFTPHGEIYTRCSVYREP 1363



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 24/140 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMPVMD 917
            +ILLVED++ N MV    + ++    +  +NG E +  V       Y LI+ D+ MP+ +
Sbjct: 1758 RILLVEDDETNRMVMLKYLDKVKVVSETASNGQECLDMVLSHEPGYYSLIICDIQMPIKN 1817

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +  R IR +E                     + NHF +IPI+A++ANA+++  ++   
Sbjct: 1818 GYETCREIREWE---------------------AKNHFHQIPIMALSANAMTDQIDDAAR 1856

Query: 978  NGMDSFVSKPVTFQKLKECL 997
             G + +V+KP+   +L + +
Sbjct: 1857 AGFNDYVTKPIKHNELGKMM 1876


>gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 954

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/243 (37%), Positives = 128/243 (52%), Gaps = 27/243 (11%)

Query: 289 PAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKL----- 343
           P+ R +    ELFG             KSG+   V  +G++  D    +  +A +     
Sbjct: 336 PSSRAMGAGRELFG-----------LHKSGQEFPVE-LGLNPIDTPNGKLALASIVDITM 383

Query: 344 --REEIAVQKAKETELNKTIHITE---ETMRAKQ----MLATMSHEIRSPLTGVVSMAEI 394
             R E A+ KA +    K   I+E   + ++A Q     LATMSHEIR+P+ GV+ M  +
Sbjct: 384 RKRTESALSKAAQDLEWKNWEISEARDQAVKAGQAKTDFLATMSHEIRTPMNGVLGMTTL 443

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL- 453
           L +T L  EQR  L  +  S + +L++INDILD SK+E+G   +E   F  R  ++  L 
Sbjct: 444 LLDTALSTEQRDYLQTLRHSSESLLRIINDILDFSKIEAGKFTIEQIPFDLRMTIEDTLD 503

Query: 454 QTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
             A AS  + L L G I    P  VIGD  RIRQ+LTNL+ NAIKFT +G+V I++  + 
Sbjct: 504 MLAPASQDRHLELVGLIDAQTPRTVIGDPGRIRQVLTNLLGNAIKFTEQGEVLIQVLPLD 563

Query: 514 EPP 516
           E P
Sbjct: 564 EDP 566



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/162 (36%), Positives = 89/162 (54%), Gaps = 23/162 (14%)

Query: 841  SQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            + +P  +   + E + +   ++L+V+DN +N  VA  M+++LG+ +DV  NG+EA+ AV 
Sbjct: 796  TSTPLITRHTMSEAQAQAAQRLLVVDDNPVNQKVALKMLEKLGYRVDVAGNGMEALAAVC 855

Query: 901  CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
               Y L+ MD  MP +DGL+ TRLIRS E  G                         +PI
Sbjct: 856  RHQYPLVFMDCQMPELDGLETTRLIRSQEQAGT-----------------------HLPI 892

Query: 961  IAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            IAMTANA++   E C   GMD F+SKP+   +L+E L ++ P
Sbjct: 893  IAMTANAMAGDRENCLKAGMDDFISKPIVPDQLREILSRWLP 934



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 1/86 (1%)

Query: 582 MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
           +DED    V +R +V DTGIG+   A   +F+ + Q  +  ARKYGGTGLGL ICK+LVE
Sbjct: 562 LDED-PTFVMLRFEVIDTGIGLSPEAQAKMFQAFTQADSSTARKYGGTGLGLTICKRLVE 620

Query: 642 LMGGRLTVTSKVHCGSTFTFILPYQV 667
           LMGG + + S    G+   F + + +
Sbjct: 621 LMGGEIGLQSMPGLGTRIWFTVRFAL 646


>gi|39726361|gb|AAR30123.1| putative histidine kinase HHK6p [Gibberella moniliformis]
          Length = 1369

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 115/191 (60%), Gaps = 17/191 (8%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETE-LNKTIHITEETMRAK-QMLATMSH 379
           GV  + MDVT+         K+REE   +++KE           +E  R K Q LA MSH
Sbjct: 757 GVIGVIMDVTE--------LKVREEALEKQSKEKRRAMANEAAAKEANRLKSQFLANMSH 808

Query: 380 EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
           EIR+P+TGV+ MAE+LS  +LD EQ++ +  + SS   +L +INDILD SKVESG + +E
Sbjct: 809 EIRTPITGVLGMAELLSGMQLDAEQQEYVENIQSSATSLLTVINDILDFSKVESGRLDIE 868

Query: 440 AAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDV--PIEVIGDVLRIRQILTNLIS 494
             +F    +VK V   LQ A    +K L  + DI D +   + VIGD  R+RQILTNL++
Sbjct: 869 EVQFSLSHIVKEVGRMLQFAVE--RKNLDFQSDIGDGIENDLVVIGDPGRVRQILTNLLT 926

Query: 495 NAIKFTPEGKV 505
           N+IKFT +G V
Sbjct: 927 NSIKFTNQGYV 937



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 27/164 (16%)

Query: 843  SPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA------V 896
            S SS   E+P ++ + K  +L+VEDN IN  +A   + +LG  +    NG EA      V
Sbjct: 1089 STSSPDQELPASE-RAKIHVLVVEDNPINQKIATKTIGKLGFQVTAAWNGKEALEYLAGV 1147

Query: 897  HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
            H    Q  D+ILMDV MP++DG K T L+R                   MP        +
Sbjct: 1148 HKGIKQKPDIILMDVQMPIIDGYKCTHLLR-----------------HHMPYK---PLVE 1187

Query: 957  RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             +PI+AMTA+A+    E+C   GMD +++KPV    L++ L ++
Sbjct: 1188 DVPIVAMTASAIQGDREKCTKAGMDDYLAKPVRGVILEKMLLRW 1231



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 50/74 (67%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  V D+GIGI ++    LF+ + Q  A  AR++GGTGLGL ICK L++LM GR+++ S
Sbjct: 953  VRFTVEDSGIGIQDDVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLES 1012

Query: 652  KVHCGSTFTFILPY 665
             V  G+  TF +P+
Sbjct: 1013 NVGVGTRATFWIPF 1026


>gi|400594468|gb|EJP62310.1| putative histidine kinase HHK2p [Beauveria bassiana ARSEF 2860]
          Length = 2226

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/143 (44%), Positives = 94/143 (65%), Gaps = 2/143 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  MA  L +T LD EQR     + +S + ++ +IN
Sbjct: 1546 KEAMESKGRFLSNMSHEIRTPLIGISGMASFLQDTTLDEEQRDYTTTIQTSANSLIMIIN 1605

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSK ++G+MKL    FRPR +++ V +  +  ++ K L L   +  DVP+ + GD 
Sbjct: 1606 DILDLSKADAGMMKLNFEWFRPRSIMEDVNELVSTMAIGKGLELNYLVEADVPLWIKGDK 1665

Query: 483  LRIRQILTNLISNAIKFTPEGKV 505
            +RIRQ+L N++ NAIKFT  G+V
Sbjct: 1666 IRIRQVLLNVVGNAIKFTDTGEV 1688



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 24/144 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV--QCQNY-DLILMDVCMPVMD 917
            K+L+VEDNKIN  V    ++++G  +++  +G+E    V  +  NY  LIL D+ MP  D
Sbjct: 2103 KVLVVEDNKINQKVLTKYLEKIGVEVEIAEDGIECTDLVFNKPHNYYSLILCDIQMPHKD 2162

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +  R IR +E                     + N F R+P+IA++AN +S   ++C A
Sbjct: 2163 GYETCRDIREWE---------------------AKNGFDRLPVIALSANVMSVVYDKCTA 2201

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             G   +++KPV F  L + + +YF
Sbjct: 2202 AGFSDYLTKPVDFISLSKAMVKYF 2225



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            + +   + DTG G  +     +F+ + Q+     R++GG+GLGL I +QLVEL GG+L  
Sbjct: 1706 IILEFSITDTGRGFSKKEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKLEG 1765

Query: 650  TSKVHCGSTFTF 661
            ++    GSTFTF
Sbjct: 1766 SAVPGQGSTFTF 1777


>gi|171687465|ref|XP_001908673.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943694|emb|CAP69346.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1417

 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 118/193 (61%), Gaps = 11/193 (5%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
           GV  + MDVT +++ RE      ++I  Q  ++ +L       +E  R K Q LA MSHE
Sbjct: 790 GVIGLIMDVT-ELKARE------QDIQAQAQEKRQLVANEAAAKEASRLKSQFLANMSHE 842

Query: 381 IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
           IR+P+TGV+ M+E+L + +L  EQR +   +  S + +L +INDILD SKVESG + +E 
Sbjct: 843 IRTPITGVIGMSELLLDVELTEEQRDITENIYRSANALLTVINDILDFSKVESGRLDIEE 902

Query: 441 AKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIE--VIGDVLRIRQILTNLISNAI 497
            +F    +V+ V +  + A+ +K L    DI++D+  +  V+GD  R+RQI+TNL++N+I
Sbjct: 903 VQFSLSVIVRDVSKMLSFAAERKDLAFHSDISEDIETDMVVMGDPGRVRQIITNLVTNSI 962

Query: 498 KFTPEGKVGIKLY 510
           KFT  G V   ++
Sbjct: 963 KFTNHGHVKFSVF 975



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 49/74 (66%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            I+  + DTGIGI E     LF+ + Q  A  ARK+GGTGLGL ICK L++LM GR+ + S
Sbjct: 986  IKFVIEDTGIGIEEEVRKRLFQPFSQGDASTARKFGGTGLGLTICKHLLDLMKGRMVLES 1045

Query: 652  KVHCGSTFTFILPY 665
             +  G+T TF +P+
Sbjct: 1046 TLGTGTTATFWIPF 1059



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 26/150 (17%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV-HAVQCQNY-----DLILMD 910
            + K  IL+VEDN IN  +A   +++LG ++    NG EA+ + +  +N      D+ILMD
Sbjct: 1139 RSKIHILVVEDNAINQQIAIKTIRKLGFNVVAAWNGKEALDYLIAAENGEKKKPDIILMD 1198

Query: 911  VCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970
            V MP++DG K T L+R                   +P          +PI+AMTA+A+  
Sbjct: 1199 VQMPLIDGYKCTHLLR-----------------HHLPYKA---FVGDVPIVAMTASAIQG 1238

Query: 971  SAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
              E+C   GMD ++SKPV  + L+  L ++
Sbjct: 1239 DREKCKRAGMDDYLSKPVKSRVLERMLVRW 1268


>gi|390958996|ref|YP_006422753.1| PAS domain-containing protein [Terriglobus roseus DSM 18391]
 gi|390413914|gb|AFL89418.1| PAS domain S-box [Terriglobus roseus DSM 18391]
          Length = 1042

 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 111/185 (60%), Gaps = 3/185 (1%)

Query: 328 MDVTDQVRKREKM-AKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPL 385
           M V+  V   +KM A    ++  +K  E  + +     E   RAK + LA MSHEIR+PL
Sbjct: 351 MAVSAIVVGEKKMFAAFVHDVTQRKLAERSMEEARITAEAANRAKSEFLANMSHEIRTPL 410

Query: 386 TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445
            GV+ M ++   T++ REQR+ +  +  S D +L +INDILD SK+E+G + LE   F  
Sbjct: 411 NGVIGMTDLALETEMSREQREYMTTVKFSADSLLTVINDILDFSKIEAGKVDLETISFDI 470

Query: 446 REVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK 504
           RE V+  L+T A    +K L L  D++ D+P  V+GD  R+RQI+ NL+ NAIKFT  G+
Sbjct: 471 RECVETTLKTLALRADEKGLELLCDVSADLPEVVLGDPGRLRQIVVNLVGNAIKFTGSGE 530

Query: 505 VGIKL 509
           V +++
Sbjct: 531 VSLRV 535



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 101/202 (50%), Gaps = 35/202 (17%)

Query: 811  HSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSS------------SAEVPETKPKP 858
            H +ANR   Q   +    K    QE  D I+++  SS            S  V +     
Sbjct: 732  HGDANR-CEQLGISAYLLKPVRRQELQDAIARALGSSMDGIKDKSLITQSTLVADLPAVR 790

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
               ILL EDN++N  +A  ++++ GHS+ V NNG EAV A + + YDL+LMDV MP MDG
Sbjct: 791  SLHILLAEDNEVNQKLAVRLLQKRGHSVVVANNGREAVEASESRKYDLVLMDVQMPEMDG 850

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            ++AT  IR          A EAG       SG+     R+ I+AMTA  +    E C A 
Sbjct: 851  IQATIAIR----------AREAG-------SGA-----RLAIVAMTALVMKGDRERCMAA 888

Query: 979  GMDSFVSKPVTFQKLKECLEQY 1000
             MD ++SKP+  Q+L   LE Y
Sbjct: 889  DMDGYLSKPIRPQELDAVLETY 910



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 41/67 (61%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIGI    L ++F  + Q      R+YGGTGLGL I ++LVELMGGR+   S   
Sbjct: 550 NVSDTGIGISPEKLESVFASFSQADTSTTRQYGGTGLGLTISRRLVELMGGRIWCESTPG 609

Query: 655 CGSTFTF 661
            GS F F
Sbjct: 610 KGSQFHF 616



 Score = 48.5 bits (114), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 34/166 (20%)

Query: 844 PSSSSAEVPETKPKPKP-----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNG---VEA 895
           P  + A  P   PKP P     K+L+V+DNK N  + + +++  G  +     G   +  
Sbjct: 621 PPVTDATAPVVVPKPLPLLAGVKVLIVDDNKTNRRILEGLLRIWGMEVASAPEGDTALAM 680

Query: 896 VHAVQCQN--YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
           +HA   +   Y L+L D+ MP MDG    + ++  +DT             A+P+     
Sbjct: 681 LHAAGLEGSPYRLLLTDMHMPKMDGFMVVQQMK--QDT-----------SLALPT----- 722

Query: 954 HFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
                 ++ +++      A  C   G+ +++ KPV  Q+L++ + +
Sbjct: 723 ------VMMLSSGGHHGDANRCEQLGISAYLLKPVRRQELQDAIAR 762


>gi|384263146|ref|YP_005418334.1| Sensor protein [Rhodospirillum photometricum DSM 122]
 gi|378404248|emb|CCG09364.1| Sensor protein [Rhodospirillum photometricum DSM 122]
          Length = 1388

 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 106/168 (63%), Gaps = 4/168 (2%)

Query: 345  EEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
            ++I  +K  E +L  +    E   RAK + LA MSHEIR+PL  ++ +  +L+ T L  +
Sbjct: 869  QDIGARKQAEGQLMLSKQAAEAANRAKTEFLANMSHEIRTPLNAILGLGHVLAQTPLTPQ 928

Query: 404  QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA--ASLQ 461
            QR+LLG    +G  +L ++NDILD S+VE+G++ L+   FR  +++  V    +  AS +
Sbjct: 929  QRELLGKTQVAGQGLLAILNDILDFSRVEAGLLLLDPHPFRLADLINTVFTIVSVPASAR 988

Query: 462  KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            KIL+   D+A D+P  + GD  R++Q+L NL+ NA+KFTP+G V +++
Sbjct: 989  KILV-SLDMALDIPEVITGDRTRVQQVLINLLGNAVKFTPQGSVRLRI 1035



 Score = 90.1 bits (222), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 29/162 (17%)

Query: 844  PSSSSAEVPETKPK---PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            PS    + P++ P       ++L+VEDN +N  VA+ ++   G  +  V NG EA+ A+Q
Sbjct: 1125 PSPPVPDAPQSAPSRTLAGVRVLIVEDNPVNQDVARRILDLEGARVTQVTNGAEALDALQ 1184

Query: 901  CQ--NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
             +   +D++LMD  MPVMDG +ATR IR     G                        R+
Sbjct: 1185 AEPTAFDVVLMDAQMPVMDGYEATRRIRHTLKLG------------------------RL 1220

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            PIIA+TA AL    +  FA GMD F++KP    ++   + ++
Sbjct: 1221 PIIALTAGALEVERDRAFAAGMDDFIAKPFDIDQMVAIVRRH 1262



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 50/75 (66%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R +V+DTG+GI   ALP+LF  + Q      R++GG+GLGLAICK+LV LM G +   S
Sbjct: 1044 LRFEVHDTGVGIEPAALPSLFEAFTQADGSTTRRFGGSGLGLAICKRLVHLMEGNIGAES 1103

Query: 652  KVHCGSTFTFILPYQ 666
            + + GS F F LP Q
Sbjct: 1104 EPNRGSVFWFTLPTQ 1118


>gi|149276653|ref|ZP_01882796.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149232322|gb|EDM37698.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 828

 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/246 (34%), Positives = 134/246 (54%), Gaps = 19/246 (7%)

Query: 273 VKESQDFKREVLEKGL----PAKREITFETELFGS-KTFLIYVEPVFSKSGETIGVNYMG 327
           ++   D K E+  +G+     A + +     +F + +T+++ V    + S    G+ +  
Sbjct: 223 LRSRADNKEEIFRRGMEIFTSADKRVKNWQWIFSTPETYVLNVCCTPTISEHISGMLWTF 282

Query: 328 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLT 386
            D+T Q    E + +L            +L +   I +E  +AK + LA MSHEIR+P+ 
Sbjct: 283 DDITQQYLYDEHLKELN----------VQLEEKSRIADEQNKAKSEFLANMSHEIRTPMN 332

Query: 387 GVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446
           GV+ M  +L NT+LD +Q   +  +  S D +L++IN+ILD SK+ESG ++LE   F   
Sbjct: 333 GVIGMTSLLRNTRLDEDQFDFVESIRISADALLEIINEILDFSKIESGKLELEEHPFVLS 392

Query: 447 EVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           ++V+      +   Q K L L   I  DVP EVIGD+ R+RQI+ NL+ NAIKFT EG++
Sbjct: 393 KIVEETYDLLSFKAQEKDLDLLYIIDPDVPYEVIGDMTRLRQIIVNLVGNAIKFTDEGEI 452

Query: 506 --GIKL 509
              IKL
Sbjct: 453 LTSIKL 458



 Score = 89.7 bits (221), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 24/129 (18%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           IL+ EDN IN  +  +  K +G+S D+V+NG+E + ++Q Q+YD++ MDV MP MDGL+A
Sbjct: 706 ILVAEDNFINQKIVANAFKNIGYSCDIVSNGIEVISSLQRQHYDMVFMDVHMPEMDGLQA 765

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
           TR I S             G E             R  IIAMTA A  +   +C   GMD
Sbjct: 766 TREIIS-----------RYGAE-------------RPVIIAMTAGAYEQDKVDCLNAGMD 801

Query: 982 SFVSKPVTF 990
            +++KP  F
Sbjct: 802 DYLTKPFDF 810



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 50/76 (65%)

Query: 588 ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
           +T  +   V D+GIGIP++ +  LF  + QV +   RKYGGTGLGL I  +L++ M GR+
Sbjct: 464 STYELEFSVQDSGIGIPQDKMHKLFNSFSQVDSSTTRKYGGTGLGLVISARLIQKMNGRI 523

Query: 648 TVTSKVHCGSTFTFIL 663
            V S+V+ G+TF F +
Sbjct: 524 WVESEVNVGTTFKFTI 539



 Score = 44.7 bits (104), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 40/65 (61%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           +L+++DN  N+ + K   +  G   D  ++G + + A++ ++YD+ ++D+ MP M+G+  
Sbjct: 564 VLIIDDNHTNLRILKGHCEIWGMYADAFDSGRKGIEALEKRDYDIAVIDMLMPEMNGIDV 623

Query: 922 TRLIR 926
            + IR
Sbjct: 624 AQEIR 628


>gi|433772826|ref|YP_007303293.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
 gi|433664841|gb|AGB43917.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
          Length = 1516

 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 158/320 (49%), Gaps = 46/320 (14%)

Query: 200  VTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHE 256
            +T+++ +   +EE      R +     ++ N PV +  +  +LR  ++   +       +
Sbjct: 815  ITDVKAREQALEES----MRENEVFRSLIDNVPVSIYAKRSDLRQFYVNKGWCDLTGFSK 870

Query: 257  EDILGKTDVEIFSGAG-VKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFS 315
            ++ +GKTDVEIF   G    + D    VL  G   + E T      GS      V   F+
Sbjct: 871  QEAIGKTDVEIFGPDGEAFVASDLA--VLRTGETQEIEETVRLP-DGS------VRHQFA 921

Query: 316  KSGETI---GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK- 371
            + G  I   G  Y+    TD              I   K +E EL++         RAK 
Sbjct: 922  RKGAMIASDGSLYLIGSTTD--------------ITELKQREAELSEARRRAVLADRAKS 967

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            + LA MSHEIR+P+ GV+ MAE+L+ + LD +Q+    +++ SG+ +L +INDILD SK+
Sbjct: 968  EFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTDIIVKSGNALLTIINDILDFSKI 1027

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIE------VIGDVLRI 485
            ++G + L+ A F   E ++ V     A+L      E D+   V IE       IGDV RI
Sbjct: 1028 DAGQLVLDPAPFNLAEAIEDV-----ATLVSTRAKEKDLELIVRIEPRLESLFIGDVGRI 1082

Query: 486  RQILTNLISNAIKFTPEGKV 505
            RQI+TNL+ NA+KFT EG V
Sbjct: 1083 RQIVTNLLGNAVKFTDEGHV 1102



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 24/163 (14%)

Query: 839  RISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
            R    P      +P T    +  IL+ EDN++N MV   ++ + G+  ++V NG +A+ A
Sbjct: 1365 RAQLQPPQVRPRLPATAGGHRLDILVAEDNEVNQMVFTQILGETGYGFEIVGNGRKALDA 1424

Query: 899  VQCQNYDLILMDVCMPVMDGLKATRLIRSFE-DTGNWDAAAEAGIEQAMPSSGSSNHFKR 957
                N  +ILMDV MP M GL+AT  IR  E +TG                         
Sbjct: 1425 FGTLNPCMILMDVSMPEMSGLEATAAIRLLEQETGT-----------------------H 1461

Query: 958  IPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            +PI+ +TA+AL    E C   GMD ++ KP++ + L E +E++
Sbjct: 1462 VPIVGVTAHALKGDRERCLEAGMDDYLPKPISPRALLEKVERW 1504



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 44/68 (64%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIPE  L  +F K+ QV     R++ GTGLGLAI  +LV+LMGG + V S    
Sbjct: 1121 VTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVDLMGGDIGVESAEGK 1180

Query: 656  GSTFTFIL 663
            GSTF F +
Sbjct: 1181 GSTFWFTV 1188


>gi|344924220|ref|ZP_08777681.1| Signal transduction histidine kinase [Candidatus Odyssella
           thessalonicensis L13]
          Length = 652

 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 108/161 (67%), Gaps = 6/161 (3%)

Query: 351 KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
           +  + +L +TI   E+  + K + +A+++HE+R+PL+G++ +A +L  T LD  Q++ + 
Sbjct: 135 RVLQDQLERTIQDAEKASQTKTKFIASLNHELRTPLSGIMGVATLLRETPLDETQQKYIN 194

Query: 410 VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK---HVLQTAAASLQKILML 466
            ++SS  ++L L+NDILD+SK+ SG ++LE  +FR   V+    ++L   AA+ Q  L  
Sbjct: 195 TILSSTQMLLTLVNDILDVSKIASGKLELEKVEFRLHNVIDDIYNILHPLAAAKQ--LAF 252

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           + +I  DVP  +IGD +R++Q+L NLISNAIKFT +GK+ +
Sbjct: 253 DCEIDQDVPQYLIGDQVRLQQVLVNLISNAIKFTSQGKISV 293



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 47/70 (67%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP + +  LF+ + Q S    R +GGTGLGL+ICK+LV LMGG + V S +  
Sbjct: 311 VVDTGIGIPADVILNLFQDFTQASPSTVRTHGGTGLGLSICKKLVTLMGGDIGVQSSLGK 370

Query: 656 GSTFTFILPY 665
           GSTF F + +
Sbjct: 371 GSTFWFTVIF 380



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 24/148 (16%)

Query: 853  ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVC 912
            E++  P   IL+ ED+ IN    K ++  LG  + + NNG EA+      ++D++ +D+ 
Sbjct: 395  ESENLPTLNILVAEDHPINQQAIKGILTNLGQKVTIANNGQEALQLFDKDSFDMVFLDIN 454

Query: 913  MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            MP MDGL+  + +R+           E G              + +PIIA TA+ ++ S 
Sbjct: 455  MPEMDGLQTNKRLRN----------KEIG--------------RNLPIIAFTADTITTSP 490

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQY 1000
            EE  + G D   SKP+   +L + + +Y
Sbjct: 491  EEFKSLGFDDIASKPINKAQLIQLITKY 518


>gi|358390559|gb|EHK39964.1| hypothetical protein TRIATDRAFT_152868 [Trichoderma atroviride IMI
           206040]
          Length = 1377

 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 116/196 (59%), Gaps = 11/196 (5%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEI 381
           GV  + MDVT+    +E+   LRE+    K K   +       E T    Q LA MSHEI
Sbjct: 766 GVIGVIMDVTEL---KERGEALREQ---DKEKRRAMANEAAAKEATRLKSQFLANMSHEI 819

Query: 382 RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
           R+P+TGV+ MAE+L + +L +EQR+ +  + SS   +L +INDILD SKVESG + +E  
Sbjct: 820 RTPITGVLGMAELLGDMELTQEQREYIDNIQSSATSLLTVINDILDFSKVESGRLDIEEV 879

Query: 442 KFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIE--VIGDVLRIRQILTNLISNAIK 498
           +F    +V+ V +    +++ K L    D+  D+  E  VIGD  R+RQI+TNL++N+IK
Sbjct: 880 QFSLSHIVQEVRKMLKFAVERKNLDFLSDVGKDIANERVVIGDPGRLRQIITNLLTNSIK 939

Query: 499 FTPEGKVGIKLYVVPE 514
           FT +G V  K  VV E
Sbjct: 940 FTNQGYV--KFSVVKE 953



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 28/169 (16%)

Query: 839  RIS-QSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA-- 895
            R+S ++P  +  E+P ++ + +  IL+VEDN +N  +A   + +LG  +    NG EA  
Sbjct: 1093 RVSVKTPPPTEQELPRSE-RARLHILVVEDNPVNQKIATRTIGKLGFQVSATWNGKEALD 1151

Query: 896  --VHAVQCQNY--DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951
              + A + QN   D+ILMDV MP++DG K T L+R                   +P    
Sbjct: 1152 YMIGASKGQNKKPDIILMDVQMPIIDGYKCTHLLR-----------------HHLP---Y 1191

Query: 952  SNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                + +PI+AMTA+A+    E+C   GMD ++ KPVT + L++ L ++
Sbjct: 1192 KKLVQDVPIVAMTASAIQGDREKCTRAGMDDYLPKPVTMKVLEKMLIRW 1240



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 48/74 (64%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  + D+GIGI E+    LF+ + Q     ARK+GGTGLGL ICK L++LM GR+ + S
Sbjct: 962  VRFVIEDSGIGIEESVRKKLFKPFSQGDPSTARKFGGTGLGLTICKNLLDLMNGRIKLES 1021

Query: 652  KVHCGSTFTFILPY 665
             V  G+  TF +P+
Sbjct: 1022 NVGSGTKATFWIPF 1035


>gi|389783845|ref|ZP_10195095.1| histidine kinase [Rhodanobacter spathiphylli B39]
 gi|388434277|gb|EIL91225.1| histidine kinase [Rhodanobacter spathiphylli B39]
          Length = 1185

 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 110/175 (62%), Gaps = 18/175 (10%)

Query: 337 REKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEIL 395
           R ++A+      V++ ++        + E    AK Q LAT+SHEIR+P+TGV+ MAE+L
Sbjct: 794 RRRLARRHHVAMVEQQRQ--------MAEAASAAKSQFLATLSHEIRTPMTGVMGMAELL 845

Query: 396 SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ- 454
            +T L+  Q      M  SG ++L+L+ND LDL+++E+G ++LE + F PR++++ V Q 
Sbjct: 846 LSTPLNPLQHDYTQAMQRSGSMLLKLLNDALDLARIEAGRLELEPSPFDPRQLLEEVAQL 905

Query: 455 ----TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
                 A  L+ IL    +++DD+P + +GD LRI+Q+L NL +NA+KFT  G+V
Sbjct: 906 EQGLAHAKGLRFIL----EMSDDLPPQWVGDALRIKQVLLNLANNALKFTEHGEV 956



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 23/155 (14%)

Query: 848  SAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLI 907
            +A V E       ++LLVED+ I   V   ++++ GH +  V NG+ A+  +    +D  
Sbjct: 1044 AAPVDEFASGRHYRLLLVEDDPIVATVICGLLEREGHRVKHVGNGLAALGELAHAPFDAA 1103

Query: 908  LMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967
            L+D+ +P +DG +  RLIR  E  G                       + +P++A+TA +
Sbjct: 1104 LLDLDLPGVDGFQIARLIRQREHAG-----------------------QHLPLLAVTARS 1140

Query: 968  LSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             +    +   +GMD F+ KPV+ ++L   L +  P
Sbjct: 1141 GTGDEAKARESGMDGFLRKPVSGEQLITALARVVP 1175



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 6/83 (7%)

Query: 594  CDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKV 653
            C V DTG GI E +   LF+++ Q  A+  ++  G+GLGLAIC++LV++MGG + + S++
Sbjct: 969  CSVSDTGPGISEASQARLFQRFAQ--AESPQRRAGSGLGLAICRELVDMMGGSIELESQL 1026

Query: 654  HCGSTFTFILPYQ----VSPIEE 672
              GSTF   +P       +P++E
Sbjct: 1027 GHGSTFRVYMPLAEPAVAAPVDE 1049


>gi|334134925|ref|ZP_08508426.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
 gi|333607427|gb|EGL18740.1| PAS domain S-box protein [Paenibacillus sp. HGF7]
          Length = 1154

 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 111/208 (53%), Gaps = 24/208 (11%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           V P+F K GE  GV  +  DVT+                     E E+ +     E+  R
Sbjct: 731 VTPLFDK-GERKGVVVVFRDVTN---------------------EKEIIRAKEFAEQADR 768

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHE+R+P+ G++ M  +L  T LD EQR    ++  S D +L ++N+ILD 
Sbjct: 769 AKSEFLAIMSHELRTPMNGIIGMTGLLQETMLDEEQRSYADIIRESSDALLHILNEILDF 828

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
           S++E+G M+L       RE +  VL+     + +K L L  DI   VP  V+GD  R+RQ
Sbjct: 829 SRIEAGKMELNLGAVDLRETLAGVLELFRVKAEEKNLKLSYDIPAGVPRYVLGDEARVRQ 888

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVVPEP 515
           +L NLISNAIKFT +G V + + +   P
Sbjct: 889 VLINLISNAIKFTEQGSVSVAVEMTNSP 916



 Score =  112 bits (281), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 26/169 (15%)

Query: 835  EKPDRISQSPSSSSAEVP---ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNN 891
            E PD     P + +A VP   E KP P  ++L+ +D+ +N  +  ++  +LG+S DVVN+
Sbjct: 1002 EAPDTAPAIPPAETAPVPSLPEAKPAPL-RVLIADDHPMNRKLLHTLTGKLGYSADVVNS 1060

Query: 892  GVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951
            G EAVHA   + YDLI MDV MPVMDGL+ATRLIR  E  G          E+A+     
Sbjct: 1061 GAEAVHAAGERAYDLIFMDVQMPVMDGLEATRLIR--EQHG----------EKAISPV-- 1106

Query: 952  SNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                    IIA+TA A  E  E+C A+GM+ ++SKP+   +LK  + ++
Sbjct: 1107 --------IIAVTAFAREEDKEQCLASGMNDYISKPILADELKRLIAEW 1147



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 50/75 (66%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           +V +   + DTGIGIP   +  LF+ + Q+     RKYGGTGLGL+I K+LVELMGG + 
Sbjct: 920 SVLLEFKIRDTGIGIPAGKIHQLFQSFSQLHPAINRKYGGTGLGLSISKKLVELMGGEIG 979

Query: 649 VTSKVHCGSTFTFIL 663
           V S+ + GSTF F L
Sbjct: 980 VESEENAGSTFFFTL 994


>gi|359788967|ref|ZP_09291930.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium alhagi
           CCNWXJ12-2]
 gi|359255194|gb|EHK58127.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium alhagi
           CCNWXJ12-2]
          Length = 1258

 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 156/308 (50%), Gaps = 41/308 (13%)

Query: 211 EELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVEI 267
           E L   +++ D F H VL   PV    ++ +L + F+   + +   + +E  LG TD + 
Sbjct: 576 EALRDSMRQIDLFRH-VLDELPVSTYVKNADLAFEFVNKAWANMTGVAQEAALGLTDRDF 634

Query: 268 FS--GAGVKESQDFKREVLEKGLPAKREITFE------TELFGSKTFLIYVEPVFSKSGE 319
           F   G G  E +D   EVL  G   + E +         +L   K+ LI ++      G 
Sbjct: 635 FGEEGEGFAE-RDL--EVLRTGELNEFEESLTHPDGTVRQLIAKKSRLISIDGTVHLIGS 691

Query: 320 TIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMS 378
           +        D+T+                  K +E+EL +         RAK + LA MS
Sbjct: 692 S-------TDITEL-----------------KQRESELQEAQRRAVLADRAKSEFLANMS 727

Query: 379 HEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKL 438
           HEIR+P+ GV+ MAE+L+ ++LD +Q+    +++ SG+ +L +INDILD SK+++G + L
Sbjct: 728 HEIRTPMNGVLGMAELLAKSELDSKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVL 787

Query: 439 EAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAI 497
           + A F   E ++ V    +  + +K L L   +A  +   VIGDV RIRQI+TNL+ NA+
Sbjct: 788 DPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVAPHLHDLVIGDVGRIRQIVTNLLGNAV 847

Query: 498 KFTPEGKV 505
           KFT  G V
Sbjct: 848 KFTDSGHV 855



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 30/158 (18%)

Query: 851  VPETKPKPKPK--------ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
            +   +P+ +P         IL+ EDN++N +V   ++ +   +  +V NG  AV A Q  
Sbjct: 1111 IESVRPRSRPAKSNGERLDILVAEDNEVNQLVFTQILGETDCTFQIVGNGRLAVAAFQEM 1170

Query: 903  NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
            N  +ILMDV MP M+GL+AT  IR  E                    G++ +  R+PI+ 
Sbjct: 1171 NPGMILMDVSMPEMNGLEATAAIRELE--------------------GATQN--RVPIVG 1208

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            +TA+AL    E C   GMD ++ KP++ + L + +E++
Sbjct: 1209 VTAHALKGDRERCIEAGMDDYLPKPISPKALLDKIERW 1246



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 46/72 (63%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTGIGIP   L  +F K+ QV A   R++ GTGLGLAI  +LV+LMGG + V S
Sbjct: 870 LRISVTDTGIGIPREKLRQVFEKFSQVDASSTRRHEGTGLGLAITSRLVDLMGGEIGVES 929

Query: 652 KVHCGSTFTFIL 663
               GSTF F L
Sbjct: 930 TEGKGSTFWFTL 941


>gi|452853587|ref|YP_007495271.1| Histidine kinase [Desulfovibrio piezophilus]
 gi|451897241|emb|CCH50120.1| Histidine kinase [Desulfovibrio piezophilus]
          Length = 765

 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 98/151 (64%), Gaps = 2/151 (1%)

Query: 364 TEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
            EE  RAK Q LA MSHEIR+P+  V+ MAE L+ T L  EQ+  L V+  SG  +L LI
Sbjct: 259 AEEGTRAKSQFLAAMSHEIRTPMNSVLGMAEALAETALTGEQKSYLNVIQGSGTTLLGLI 318

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGD 481
           +DILDLSK+ESG + +E+  F+  +V+ HV    + A   K L L+  IA ++P  V+GD
Sbjct: 319 DDILDLSKIESGDVVVESIPFQIEDVLAHVFSVMSYAGHAKALDLDYMIAPEIPGMVLGD 378

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
             R++QIL NL+SN IKFT  G V +++ V+
Sbjct: 379 SYRLQQILMNLVSNGIKFTHAGAVHVEVDVL 409



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 54/81 (66%)

Query: 588 ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
           ++V ++  V D+GIGI   AL ++F K+ Q  +   R YGG+GLGLAICK L E+MGG++
Sbjct: 418 SSVVLQFLVRDSGIGIVPEALDSIFDKFTQADSSTTRNYGGSGLGLAICKSLCEMMGGKI 477

Query: 648 TVTSKVHCGSTFTFILPYQVS 668
            + S+V  G+   F LP+ V+
Sbjct: 478 AIESEVGVGTNVLFNLPFDVA 498



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 21/129 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +ILLVEDN+ NVM+ +  +K   H++ V ++G E     + + +D++ MD+ MPV+DG  
Sbjct: 642 EILLVEDNEANVMLIEVYLKDTAHTLSVAHDGQEGFSLYREKRFDIVFMDIEMPVLDGYG 701

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           +TR+IR +E                       N    + IIA+TA+AL+E  E+    G 
Sbjct: 702 STRMIRQWE---------------------RENRKSPVRIIALTAHALNEVREKALDAGC 740

Query: 981 DSFVSKPVT 989
           +S ++KPV+
Sbjct: 741 NSHLTKPVS 749


>gi|406998814|gb|EKE16674.1| hypothetical protein ACD_10C00859G0003 [uncultured bacterium]
          Length = 996

 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 102/165 (61%), Gaps = 2/165 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I  +K  E E+ +   + E   +AK   LA MSHEIR+P+ GV+ M E+  +T L  EQ
Sbjct: 340 DITARKQAEVEILQARDVAEAASQAKSDFLANMSHEIRTPMNGVIGMTELALDTALTEEQ 399

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKI 463
           R+ L ++ SS + +L +INDILD SK+E+G +++E   F    V+   L+T A  + +K 
Sbjct: 400 REYLDIVKSSAESLLAIINDILDFSKIEAGKLQVEEISFDLHRVIADTLKTLALRAHEKN 459

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
           L L  ++   VP  V GD  RIRQ+L NL+ NAIKFT +G++ ++
Sbjct: 460 LELISEVMPKVPCHVFGDPSRIRQVLVNLLGNAIKFTEQGEISLR 504



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 20/139 (14%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILLVED+ +N  +A  ++++ GH   + NNG EA+       +DLILMD+ MPVM GL+A
Sbjct: 755  ILLVEDHPVNQKLALGLLEKWGHQATLANNGQEALAIFSESAFDLILMDMQMPVMGGLEA 814

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T  IR  E                     +    +R PIIAMTA+A+    E C   GMD
Sbjct: 815  TLRIRQMEL--------------------ADESRRRTPIIAMTASAMQGDREACLGVGMD 854

Query: 982  SFVSKPVTFQKLKECLEQY 1000
             ++SKP+  ++L E L  +
Sbjct: 855  EYLSKPIKARELLEKLLSF 873



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 586 LEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
           ++   +I   V DTG+GI  +    +F  + Q      R++GGTGLGL+I + LV LMGG
Sbjct: 511 VDGNAYIHFAVSDTGVGIAPDKQELIFEAFSQEDTSTTRRFGGTGLGLSISRHLVALMGG 570

Query: 646 RLTVTSKVHCGSTFTFILPYQV--SPIE 671
            + + S++  GSTF F L   +   P+E
Sbjct: 571 EIWLESQLGRGSTFHFSLKLAIDTQPLE 598



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 27/142 (19%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ--NYDLILMDVCMPVMDGL 919
            IL+V+DN  N  V   ++        +  +G  A+  ++C   ++D I++D  MP MDG 
Sbjct: 611  ILVVDDNATNRRVLSGLLAAWDVKTQLAESGAMALDIMRCAETSFDCIILDAQMPAMDGY 670

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            +  R +R+                          H +  P++ ++++A+    + C A G
Sbjct: 671  ELARQLRA-------------------------EHPQLPPMLMLSSSAMRGDEQRCQAAG 705

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            +D++ SKP++ + L   L ++F
Sbjct: 706  IDAYFSKPISSEDLLSALRRFF 727


>gi|152996044|ref|YP_001340879.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836968|gb|ABR70944.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1258

 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 115/209 (55%), Gaps = 47/209 (22%)

Query: 313 VFSKSGET---IGVNYMGMDVTDQVRKREKMAKLR----EEIAVQKAKETELNKTIHITE 365
           VF+K G+    +GVN   MD+T    ++E    LR    + +A  KAK            
Sbjct: 561 VFNKKGQASHLVGVN---MDIT---SRKETEVLLRNASDQAVAASKAK------------ 602

Query: 366 ETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDI 425
                   LATMSHEIR+PL GV+ MAE+LS TKL+ EQ   L V+  SG+ +L LIND+
Sbjct: 603 -----SDFLATMSHEIRTPLNGVLGMAELLSGTKLNPEQTTQLNVLKESGEGLLGLINDL 657

Query: 426 LDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIA--------DDV-PI 476
           LD SK+E+G + +E   F   + +  V+        ++LM+  D          D+V P 
Sbjct: 658 LDFSKIEAGHISIERVDFNLEKAIYDVI--------RLLMMRADEKGIDLLVEYDEVCPR 709

Query: 477 EVIGDVLRIRQILTNLISNAIKFTPEGKV 505
            ++GDV RI+QILTNLISNAIKFT  G V
Sbjct: 710 FLVGDVFRIKQILTNLISNAIKFTSIGHV 738



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 4/96 (4%)

Query: 585 DLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMG 644
           D    V I   V DTG+GI +   P LF  ++Q  +   RK+GGTGLGLAI KQL+ LM 
Sbjct: 747 DKHGMVSITISVADTGVGIADKVQPHLFTAFVQADSSTTRKFGGTGLGLAITKQLIGLMN 806

Query: 645 GRLTVTSKVHCGSTF--TFILP--YQVSPIEENSDD 676
           G ++++SK++ GSTF  TF LP  + +S IE   D+
Sbjct: 807 GNISLSSKLNVGSTFTVTFALPESHAMSYIETIVDE 842



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 21/144 (14%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            K  +L+VED K N+ VA+ ++ ++G  +    NG   V        DLI MD+ MPVMDG
Sbjct: 999  KGLVLVVEDMKANLAVAQGILTRMGFDVIAAENGKVGVEMWGTHQPDLIFMDLHMPVMDG 1058

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            + A R IR                 QA  +SG+    +R+PIIA+TA+ + E+  E F  
Sbjct: 1059 MSAMRAIR-----------------QAEKNSGN----RRVPIIALTADIMPETLAEVFRA 1097

Query: 979  GMDSFVSKPVTFQKLKECLEQYFP 1002
            G D  V KP   ++    L+++ P
Sbjct: 1098 GGDGLVPKPFKQKEFISMLDEWLP 1121



 Score = 42.7 bits (99), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 29/142 (20%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV-QCQN----YDLILMDVCMPV 915
           K L+++DN+ N+ + K+ ++      D   + V+A+  + Q  N    Y +I++D  MP 
Sbjct: 849 KTLVIDDNETNLTILKNQLRSCDIYADAEISPVDALSRIEQSINDDSPYQIIVLDYLMPE 908

Query: 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
           +DGL  ++LIR                      SGS       PII MT++    S +E 
Sbjct: 909 LDGLMLSKLIREV--------------------SGSLYQ----PIILMTSSVGRLSQDEL 944

Query: 976 FANGMDSFVSKPVTFQKLKECL 997
              G++  + KP++   LK+ L
Sbjct: 945 STAGVNMSIVKPMSALTLKKGL 966


>gi|385258617|gb|AFI55137.1| multi-sensor hybrid histidine kinase [Halomonas anticariensis]
          Length = 914

 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 105/171 (61%), Gaps = 2/171 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L+E +   + K  EL+       E  R K + LA MSHEIR+PL G++   ++L  + LD
Sbjct: 242 LQESMETIEIKNIELDMAHRRALEANRIKTEFLANMSHEIRTPLNGIIGFCQLLGRSSLD 301

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASL 460
             QR+ L  +  + D +L LINDILD SK+E+G ++LEA       +V  VL   A  + 
Sbjct: 302 TRQREWLQHVHKASDSLLSLINDILDFSKMEAGKLELEAVDLDMVALVDEVLGLQAPQAH 361

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
           QK L L   + DDVP+++ GD LRI+Q+LTNL+ NA+KFT +G+V +++ V
Sbjct: 362 QKRLHLLALVYDDVPVQLQGDPLRIKQVLTNLVHNAVKFTEQGEVIVRVMV 412



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 3/95 (3%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           +  V ++  V DTGIG+       LF+ + Q S    R+YGGTGLGL IC+QLVE MGG 
Sbjct: 417 QGLVTLKVSVSDTGIGLDPEYRDRLFKAFSQASVSDTRQYGGTGLGLMICRQLVEQMGGE 476

Query: 647 LTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLS 681
           + V S+   G+TF F L       EE    P +LS
Sbjct: 477 IGVESQPGKGTTFAFTLSLLARSFEER---PPELS 508



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 26/149 (17%)

Query: 856  PKPK---PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVC 912
            P P+    K+L+V+D   N ++ K ++  LG +  +  +G EA+   Q ++ DL+LMD+ 
Sbjct: 635  PAPRHSSAKVLVVDDTASNRLLIKELLADLGLTTLLATSGEEALALAQSESADLVLMDIR 694

Query: 913  MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            +P MDG+  T  +R     G+W                     +  PIIA+TA+AL E  
Sbjct: 695  LPGMDGVATTHSLRKL--GGSW---------------------RSCPIIAVTAHALEEER 731

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                 +G+   + KP+  Q L   L Q+ 
Sbjct: 732  HRLLQHGLHDVLIKPLDSQALTRLLSQHL 760


>gi|409911822|ref|YP_006890287.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing [Geobacter sulfurreducens KN400]
 gi|298505397|gb|ADI84120.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 772

 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 150/315 (47%), Gaps = 23/315 (7%)

Query: 200 VTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHE 256
           +  + +  S  + + + L+    FL  +L  AP+ +     +   R   N +     +  
Sbjct: 137 ILGIARDVSERKRMEESLRSTSEFLDTILDEAPLPIYITSVDGTLRLANNAWERETGIPR 196

Query: 257 EDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSK 316
              +G+   E+F  A   +  +  R V+E    A ++  F     G + F     P+   
Sbjct: 197 NAAVGRRLNELFPAAMCDQFSEINRRVVESNATAVQD-EFLDFGAGVRVFHTIKFPLRDA 255

Query: 317 SGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLA 375
           +G  + V  + +D+TD    R KM             E EL        ++ RAK   LA
Sbjct: 256 AGGVVDVGGISIDITD----RSKM-------------EGELRAAHAAAVDSSRAKIDFLA 298

Query: 376 TMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGV 435
            MSHEIR+P+ GV+   E+L  T LD  QR+   +   S + +L +IN +LD SK+ES  
Sbjct: 299 NMSHEIRTPMNGVIGTLELLRETDLDPRQREYAEIARESAESMLAVINMVLDYSKIESHQ 358

Query: 436 MKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLIS 494
           + LEA  F  RE V+  ++   A + +K +M+  D+   VP  V+GD +R  QI+ NL+ 
Sbjct: 359 LVLEAVPFAIREAVERAVKPFRAVAARKGVMVAADVPPHVPETVVGDPVRFSQIVANLVG 418

Query: 495 NAIKFTPEGKVGIKL 509
           NA+KFT +G + ++L
Sbjct: 419 NAVKFTEQGAITVQL 433



 Score =  103 bits (256), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 23/169 (13%)

Query: 833  MQEKPDRISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNN 891
            ++  PD I+  P ++   V E     +P  +LLV+D+ ++  V   +++  GH +    +
Sbjct: 518  LRGAPDDIASPPPATGWAVAEKSVAVRPLSVLLVDDSAVSRKVVSLLLESDGHRVTFAGD 577

Query: 892  GVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951
            GVEA+ A+  + +DL+LMDV MPVMDG +A R IR+ E  G                   
Sbjct: 578  GVEALAAIGREAFDLVLMDVQMPVMDGFEAMRAIRAGEAAGG------------------ 619

Query: 952  SNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                 R+PIIA+TA AL+   E C   G D +++KPV F +L+  + ++
Sbjct: 620  ----ARLPIIALTARALAGDRELCLEAGADDYLAKPVNFSELRRVISRH 664



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 50/86 (58%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           + C V DTG GI      T+F  ++Q      R +GGTGLGLAI ++LVE M G ++V S
Sbjct: 445 VSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGVISVAS 504

Query: 652 KVHCGSTFTFILPYQVSPIEENSDDP 677
           +   GSTF+F +  + +P +  S  P
Sbjct: 505 EPGMGSTFSFRVRLRGAPDDIASPPP 530


>gi|411117040|ref|ZP_11389527.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
 gi|410713143|gb|EKQ70644.1| PAS domain S-box [Oscillatoriales cyanobacterium JSC-12]
          Length = 1270

 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 108/170 (63%), Gaps = 11/170 (6%)

Query: 344 REEIAVQKAKETELNKTIHITEETMRAKQM----LATMSHEIRSPLTGVVSMAEILSNTK 399
           RE++A Q+ +E E  +     ++  RA QM    LATMSHEIR+P+ GV+ M  +L +T+
Sbjct: 565 REQLA-QRNQELERAR-----QQAERASQMKSTFLATMSHEIRTPMNGVLGMTSLLLDTQ 618

Query: 400 LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAAS 459
           L+ EQR  +  +  SG+ +L LIN ILD SK+E+G M+LE  +F     ++ V    AA+
Sbjct: 619 LNAEQRDFVETIRCSGETLLTLINQILDFSKLEAGEMELETLEFDLNTCIEEVADLVAAT 678

Query: 460 LQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
              K L L   +  ++P  + GDV R+RQ+LTNL+SNA+KFT +G+V I+
Sbjct: 679 AHAKGLELATLVYRNLPTRLKGDVSRLRQVLTNLVSNAVKFTAQGEVVIQ 728



 Score = 92.8 bits (229), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 74/144 (51%), Gaps = 23/144 (15%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            +P+ K+LLVEDN IN  V  + +K LG+  DV  NG EA+  ++   YDLILMD  MPV+
Sbjct: 1004 QPRLKLLLVEDNVINQKVTLNQLKNLGYKADVAANGKEALQMLEQIPYDLILMDCQMPVL 1063

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG   T+ IR  E                    G+  H     ++A+TANAL E    C 
Sbjct: 1064 DGYSTTQEIRRIE--------------------GTDRH---TIVVALTANALREDRARCI 1100

Query: 977  ANGMDSFVSKPVTFQKLKECLEQY 1000
              GMD ++SKP+   KL   L  +
Sbjct: 1101 QAGMDDYLSKPILKDKLAAKLRYW 1124



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 52/86 (60%)

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
           ++  + + T  I   V DTGIGIP  A   LF+ + QV A   R+YGGTGLGLAI KQLV
Sbjct: 730 ALKAETDTTATIMFSVTDTGIGIPLEAQRKLFKPFSQVDASTTRRYGGTGLGLAISKQLV 789

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQ 666
           ELMGG + V S     + F F L ++
Sbjct: 790 ELMGGEIGVDSTEGKEARFWFTLTFE 815


>gi|346318465|gb|EGX88068.1| autoinducer 2 sensor kinase/phosphatase luxQ [Cordyceps militaris
            CM01]
          Length = 2133

 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 94/143 (65%), Gaps = 2/143 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  MA  L +T LD EQR     + +S + ++ +IN
Sbjct: 1471 KEAMESKGRFLSNMSHEIRTPLIGISGMASFLQDTTLDEEQRDYTTTIQTSANSLIMIIN 1530

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSK ++G+MKL    FRPR +++ V +  +  ++ K L L   +  DVP+ V GD 
Sbjct: 1531 DILDLSKADAGMMKLNFEWFRPRSIMEDVNELVSTMAIGKGLELNYLVEADVPLWVKGDK 1590

Query: 483  LRIRQILTNLISNAIKFTPEGKV 505
            +RIRQ+L N++ NAIKFT  G+V
Sbjct: 1591 IRIRQVLLNVVGNAIKFTEIGEV 1613



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 26/141 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            K+L+VEDNKIN  V    ++++G  +++  +G+E    V  + ++   +     ++DG +
Sbjct: 2018 KVLVVEDNKINQKVLTKYLEKIGVEVEIAEDGIECTELVFSKPHNYYSL-----ILDGYE 2072

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
                IR++ED                      N F+R+P+IA++AN +S  A++C A G 
Sbjct: 2073 TCLDIRAWED---------------------KNGFERLPVIALSANVMSVVADKCTAAGF 2111

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
              +V+KPV F  L + + +YF
Sbjct: 2112 SDYVTKPVDFISLSKAMVKYF 2132



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 41/66 (62%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            + DTG G  +     +F+ + Q+     R++GG+GLGL I +QLVEL GGRL  T+    
Sbjct: 1638 ITDTGRGFSQQEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGRLEGTAIPGE 1697

Query: 656  GSTFTF 661
            GSTFTF
Sbjct: 1698 GSTFTF 1703


>gi|384218641|ref|YP_005609807.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 6]
 gi|354957540|dbj|BAL10219.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 6]
          Length = 776

 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 115/207 (55%), Gaps = 25/207 (12%)

Query: 303 SKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
           ++ + +  +P + + G+ +G    G DVT++ R  +  A+ R +                
Sbjct: 327 ARLWSLTAKPAYDRDGQFLGYRGFGRDVTERWRAEKAEAESRAK---------------- 370

Query: 363 ITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
                      LA MSHEIR+P+ GV+ +A +L  TKLD EQ + +  +  SGD + +++
Sbjct: 371 --------SDFLAVMSHEIRTPMNGVLGLASMLLETKLDPEQHEAVTSIRESGDNLQRIL 422

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA-AASLQKILMLEGDIADDVPIEVIGD 481
           NDILDLSK+E+G    EA  F P+ +V+ V     A +  K L ++ ++  ++P  + GD
Sbjct: 423 NDILDLSKLEAGRFAFEAIDFAPQALVETVATVVRAGAKSKGLAVKVELDPNLPPTLRGD 482

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGIK 508
           V RIRQ+L NL SNA+KFT EG+V IK
Sbjct: 483 VARIRQVLLNLASNAVKFTDEGEVTIK 509



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 23/128 (17%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           K+L+ ED+ +N MV   M+      + VV +GV+AV A    +YD++LMDV MP MDGL 
Sbjct: 627 KVLVAEDDAVNRMVVTKMLGAFEVELRVVTDGVQAVEAASQSDYDVVLMDVRMPDMDGLA 686

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR IR+                           F+ +PI+A+TANA  E  + C   GM
Sbjct: 687 ATRAIRA-----------------------QGGRFEALPIVALTANAFPEDVKICREAGM 723

Query: 981 DSFVSKPV 988
             F++KP+
Sbjct: 724 SDFLAKPL 731



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/102 (46%), Positives = 61/102 (59%), Gaps = 9/102 (8%)

Query: 585 DLEATV-WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
           DL ATV W    V D+GIGI    L  LF  + Q  A  +R++GGTGLGLAI ++++E M
Sbjct: 517 DLLATVEWT---VTDSGIGIAPEKLGELFSDFAQADASISRRFGGTGLGLAISRRIIEQM 573

Query: 644 GGRLTVTSKVHCGSTFTF--ILPY---QVSPIEENSDDPDDL 680
           GG + VTS    GSTF F  +LP+   Q S     SD+ D+L
Sbjct: 574 GGTIGVTSTPGEGSTFRFTLVLPWSQAQASDQAAGSDEADEL 615


>gi|409198430|ref|ZP_11227093.1| PAS/PAC sensor hybrid histidine kinase [Marinilabilia salmonicolor
           JCM 21150]
          Length = 1033

 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 98/150 (65%), Gaps = 2/150 (1%)

Query: 362 HITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQ 420
           H   E  +AK + LA MSHEIR+P+ G++   E+L  T+L+REQ+ ++ ++  S D +L 
Sbjct: 525 HREAEANKAKSEFLANMSHEIRTPMNGIIGATELLGQTRLNREQQNIITIISRSCDNLLN 584

Query: 421 LINDILDLSKVESGVMKLEAAKFRPREVVKHVL-QTAAASLQKILMLEGDIADDVPIEVI 479
           +INDILD SK+E+G MK+E+  F  R  V ++L Q A  S  K L L   + + +P  ++
Sbjct: 585 IINDILDFSKIEAGKMKIESYSFNIRSTVDYLLDQMAFRSHDKNLELIASVEETIPSNLL 644

Query: 480 GDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           GD  R+ QI+ NL+ NA+KFT EG+V +K+
Sbjct: 645 GDEGRLIQIIINLMGNAVKFTQEGEVVLKV 674



 Score = 97.1 bits (240), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 82/159 (51%), Gaps = 28/159 (17%)

Query: 845  SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV--QCQ 902
            +  S++   +KPK   KILLVEDN IN  + + M+ ++G    + NNG EAV  +    +
Sbjct: 901  TDKSSDNYNSKPKENKKILLVEDNPINQKITEKMLSRIGMVTTITNNGAEAVDLLIKNQE 960

Query: 903  NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
             +D ILMD+ MPV++GL ATR +R            +AGI                PIIA
Sbjct: 961  TFDAILMDIQMPVLNGLDATRELR------------KAGIST--------------PIIA 994

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            MTAN L    E C   GM+ ++ KPV    L+  ++++ 
Sbjct: 995  MTANVLKGDREACLEAGMNDYIGKPVKLNDLQHTIQKWM 1033



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 8/79 (10%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT----- 650
           + D+GIGIP +    +F  + Q      RKYGGTGLG +I K LVELMGG++ V      
Sbjct: 690 IEDSGIGIPPDKREKIFESFTQADGSTTRKYGGTGLGTSISKMLVELMGGKIWVESPNPN 749

Query: 651 ---SKVHCGSTFTFILPYQ 666
              S  + GS F FILP++
Sbjct: 750 FAWSAENPGSVFHFILPFK 768


>gi|116052653|ref|YP_792968.1| kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|421176766|ref|ZP_15634425.1| kinase sensor protein [Pseudomonas aeruginosa CI27]
 gi|237651845|gb|AAM15532.2|AF482691_1 probable sensor kinase [Pseudomonas aeruginosa]
 gi|115587874|gb|ABJ13889.1| kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|404530403|gb|EKA40403.1| kinase sensor protein [Pseudomonas aeruginosa CI27]
          Length = 931

 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           EI+ +K  E EL +   + +    AK + LATMSHEIR+PL G++   E+L  T+L R+Q
Sbjct: 429 EISARKRMEAELARAKSLADAANEAKTLFLATMSHEIRTPLYGMLGTLELLGRTELSRQQ 488

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
              L  +  S   +LQLI+D+LD+SK+E+G + LE  +F P E+ + V+Q+   + Q K 
Sbjct: 489 AGYLKAIQHSSSTLLQLISDVLDVSKIEAGQLDLECVEFSPLELTEEVVQSFTGAAQAKG 548

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L L   ++ ++P+ + G    IRQIL NL+SNA+KFT  G V + L
Sbjct: 549 LQLYTCLSAELPLRMRGAAASIRQILNNLLSNAVKFTDNGYVNVHL 594



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 26/137 (18%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           ++L+VEDN IN ++ +  M+ LG S++++ +G EA+   Q   +D++L D+ MP M+G +
Sbjct: 813 RVLVVEDNAINQLILRDQMEALGCSVELLFDGREALLHCQTACFDVVLTDINMPNMNGYE 872

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            T  +R              G  Q              PII  TANA+ E  E C + GM
Sbjct: 873 LTAELR------------RQGFRQ--------------PIIGATANAMREERERCMSAGM 906

Query: 981 DSFVSKPVTFQKLKECL 997
           +  + KPV    L+ CL
Sbjct: 907 NDCLVKPVDLNALQNCL 923



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVS-ADHARKYGGTGLGLAICKQLVELMGGRL 647
            V +   V DTG+GI     P LF  + Q+  ++H     GTGLGL+I ++L +LM G L
Sbjct: 603 CVMLTWQVNDTGMGINVEDQPRLFEPFYQIRRSEH--PVAGTGLGLSISQRLAQLMNGSL 660

Query: 648 TVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQ 686
            + S++  GS+F+  LP +   ++    +P DL+  A Q
Sbjct: 661 KLVSELGLGSSFSLRLPLERIAMQA---EPQDLAGCAVQ 696


>gi|336276167|ref|XP_003352837.1| histidine kinase group protein [Sordaria macrospora k-hell]
          Length = 1333

 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 99/316 (31%), Positives = 161/316 (50%), Gaps = 31/316 (9%)

Query: 218 KRADNFLHFVLQNAPVVMGHQDKE-----LRYRFIYNHF-PSLHEEDILGKTDVEIFSGA 271
           KR    L  V+ ++ + M   D +     L    I++   P L     +GK   E+F+  
Sbjct: 565 KRTRQQLRSVIAHSRMTMFAVDPDRKVTLLEGSLIWDALSPELSASWFIGKDVYEVFNSL 624

Query: 272 GVK----ESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSK---SGETI--- 321
             +    ++  F  + LE  L  K  +  +   FG + +    +P+  +   +G +I   
Sbjct: 625 NQQLPDGQTPAF-LQPLESILGGKSPVELQDHKFG-RWYRTGFQPILRRDPITGNSIENF 682

Query: 322 --GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMS 378
             GV    MDVT +++ RE+      +I  Q  ++ +L       +E  R K Q LA MS
Sbjct: 683 VEGVMGFIMDVT-ELKDRER------DIEAQVLEKRQLLANEAAAKEASRLKSQFLANMS 735

Query: 379 HEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKL 438
           HEIR+P+TGV+ MAE+L +  LD EQR+L   +  S + +L +INDILD SK+ESG + +
Sbjct: 736 HEIRTPITGVIGMAELLLDVGLDAEQRELTENIFRSANALLTVINDILDFSKIESGRLDI 795

Query: 439 EAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIE--VIGDVLRIRQILTNLISN 495
           E  +F    V++ V +  + + + K L    +I  D+ ++  V+GD  R+RQ+L NL  N
Sbjct: 796 EEVQFSLAVVIQEVSKMLSFTAERKGLTFNYEICSDIALDLVVMGDPGRLRQVLCNLAQN 855

Query: 496 AIKFTPEGKVGIKLYV 511
            IKF  EG V + ++V
Sbjct: 856 GIKFCHEGHVKLNVFV 871



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 26/145 (17%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH------AVQCQNYDLILMDVCMPV 915
            IL+VEDN+IN  +A   +K+LG  +    NG EA+       A + +  D+ILMDV MP+
Sbjct: 1026 ILVVEDNEINQQIAIKTIKKLGFEVAAAWNGKEALEYLSEASAGKKRKPDIILMDVQMPL 1085

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            +DG   T L+R                   +P      + K +PI+AMTA+A+    E+C
Sbjct: 1086 IDGYLCTHLLR-----------------HHIPYR---TYVKDVPIVAMTASAIQGDKEKC 1125

Query: 976  FANGMDSFVSKPVTFQKLKECLEQY 1000
               GMD ++SKPV  + L++ L ++
Sbjct: 1126 KRAGMDDYLSKPVKSKTLEKMLLRW 1150



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           T+ ++  + DTGIGI E  L  LF+ + Q  A  ARK+GGTGLGL I K L+ELM GR+ 
Sbjct: 878 TIEVKFVIQDTGIGIEEEVLKGLFQPFSQGDASTARKFGGTGLGLTISKNLLELMNGRMA 937

Query: 649 VTSKVHCGSTFTFILPYQVSPIEENS 674
           + SK   G+T TF +P++  P + NS
Sbjct: 938 LASKRGEGTTATFWIPFK-KPQKANS 962


>gi|398821852|ref|ZP_10580260.1| signal transduction histidine kinase [Bradyrhizobium sp. YR681]
 gi|398227484|gb|EJN13698.1| signal transduction histidine kinase [Bradyrhizobium sp. YR681]
          Length = 776

 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 116/208 (55%), Gaps = 25/208 (12%)

Query: 303 SKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
           ++ + +  +P + + G+ +G    G DVT++ R  +  A+ R +                
Sbjct: 327 ARLWSLTAKPAYDRDGQFLGYRGFGRDVTERWRAEKAEAESRAK---------------- 370

Query: 363 ITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
                      LA MSHEIR+P+ GV+ +A +L  T+LD EQR+ +  +  SGD + +++
Sbjct: 371 --------SDFLAVMSHEIRTPMNGVLGLASMLLETELDPEQREAVTTIRESGDNLQRIL 422

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGD 481
           NDILDLSK+E+G    EA  F P+ +V+ V     AS + K L ++ ++   +P  + GD
Sbjct: 423 NDILDLSKLEAGRFAFEAIDFAPQTLVETVATVVRASAKGKGLTVKVELDPSLPPTLRGD 482

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGIKL 509
           V RIRQ+L NL SNA+KFT EG+V I +
Sbjct: 483 VARIRQVLLNLASNAVKFTDEGEVTIAV 510



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 23/128 (17%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           K+L+ ED+ +N MV   M+      + VV +GV+AV A    +YD++LMDV MP MDGL 
Sbjct: 627 KVLVAEDDAVNRMVVSKMLGAFDVELRVVTDGVQAVEAASEGDYDVVLMDVRMPDMDGLA 686

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR IR+                           F+ +PIIA+TANA  E  + C   GM
Sbjct: 687 ATRAIRA-----------------------QGGRFEALPIIALTANAFQEDVKICREAGM 723

Query: 981 DSFVSKPV 988
             F+ KP+
Sbjct: 724 SDFLPKPL 731



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 9/102 (8%)

Query: 585 DLEATV-WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
           DL ATV W    V D+GIGI    +  LF  + Q  A  +R++GGTGLGLAI ++++E M
Sbjct: 517 DLLATVEWT---VTDSGIGIAPEKVGQLFSDFAQADASISRRFGGTGLGLAISRRIIEQM 573

Query: 644 GGRLTVTSKVHCGSTFTF--ILPY---QVSPIEENSDDPDDL 680
           GG + VTS    GSTF F  +LP+   Q S      D+ D+L
Sbjct: 574 GGTIGVTSTPGEGSTFRFTLVLPWSQAQASDQAAGRDEADEL 615


>gi|333983217|ref|YP_004512427.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
 gi|333807258|gb|AEF99927.1| multi-sensor hybrid histidine kinase [Methylomonas methanica MC09]
          Length = 926

 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 95/145 (65%), Gaps = 1/145 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LA MSHEIR+P+ GV+ M E+L +T L  EQ++    +  SG+ +L +INDILD SK+
Sbjct: 277 QFLANMSHEIRTPMNGVLGMTELLLSTSLTPEQKRFAENVHKSGESLLSIINDILDFSKI 336

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G +KLE+  F   + V+ V++  +  +  K L L   IA DVP  VIGD  R+RQIL+
Sbjct: 337 EAGHLKLESVDFCLYQTVEDVIELFSERAYNKHLELNYRIAGDVPENVIGDPTRLRQILS 396

Query: 491 NLISNAIKFTPEGKVGIKLYVVPEP 515
           NL+SNAIKFT +G + + + +   P
Sbjct: 397 NLLSNAIKFTSQGNITVDVGLTDTP 421



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 28/157 (17%)

Query: 844  PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
            P++++A++          ILLVEDN+IN  VA++M+   G ++D+  NG+EA+ A+  + 
Sbjct: 666  PATAAAQL-------SAHILLVEDNRINQAVAQAMLNSFGCTVDIAENGLEALQAIDRKA 718

Query: 904  YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
            YDL+LMD  MP MDG + T  IR  ++  N                       R PIIA+
Sbjct: 719  YDLVLMDCMMPKMDGYETTAEIRRRQNCDN---------------------LSRFPIIAL 757

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            TANA+    E+C   GMD +++KP     L + + ++
Sbjct: 758  TANAIEGDREKCLLAGMDDYLTKPFESAALYKMISRW 794



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 52/80 (65%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTGIGI +  +P LF+ + Q  +   RKYGGTGLGL+ICKQLV +M G + V +
Sbjct: 435 VRFTVSDTGIGISKGVIPNLFQPFSQADSSTTRKYGGTGLGLSICKQLVNMMSGDIEVHA 494

Query: 652 KVHCGSTFTFILPYQVSPIE 671
           ++  G+TFT  LP   S  E
Sbjct: 495 RIGEGTTFTVNLPLFASSKE 514


>gi|410672020|ref|YP_006924391.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
 gi|409171148|gb|AFV25023.1| multi-sensor hybrid histidine kinase [Methanolobus psychrophilus R15]
          Length = 1771

 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 123/209 (58%), Gaps = 13/209 (6%)

Query: 307  LIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEE 366
            L  V+ V   +G   G+  M +D+T++    EK+    +E+ +   K  EL++ +   EE
Sbjct: 1067 LYSVDGVRLANGRQGGLIGMLVDITERKLAEEKLQTYADEVEI---KNKELDRALARAEE 1123

Query: 367  TMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDI 425
              +AK + LA MSHEIR+P+ GV+ M  +L +T+L+ EQR  +  + +SG+ +L++INDI
Sbjct: 1124 ATKAKSEFLANMSHEIRTPMNGVIGMTGLLLDTELNEEQRHYVETVQASGEALLEIINDI 1183

Query: 426  LDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-----KILMLEGDIADDVPIEVIG 480
            LD SK+E+G ++LE   F     + +VL + AA L      K L        DVP  + G
Sbjct: 1184 LDFSKIEAGKLELEMLDFD----LHNVLDSFAAMLSIKAHDKGLEFICAADPDVPAYISG 1239

Query: 481  DVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            D  R++QILTNL  NA+KFT  G+V +++
Sbjct: 1240 DPGRLQQILTNLAGNAVKFTHLGEVVVRV 1268



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 95/166 (57%), Gaps = 24/166 (14%)

Query: 838  DRISQSPSSSSAE--VPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA 895
            DR  Q  SS+  E  VP+ +     +ILL EDN +N  VA+SM+K+LG   D V NG EA
Sbjct: 1497 DRKIQEQSSNVNENVVPQ-RHTNNVRILLAEDNIVNQKVAQSMLKKLGFRTDTVANGAEA 1555

Query: 896  VHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955
            + A++   YDL+LMDV MP MDGL ATRLIR                      SGS+   
Sbjct: 1556 LKALEMIPYDLVLMDVQMPEMDGLAATRLIR---------------------YSGSAVLN 1594

Query: 956  KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            K +PIIAMTA+A+    E    +GMD ++SKPV+ + LK  L+++ 
Sbjct: 1595 KDVPIIAMTAHAMKGDRERFIESGMDDYISKPVSMEALKRVLDKWL 1640



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 50/80 (62%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            V +R  V DTGIGI E+ +  LF ++ Q+ A   R+Y GTGLGLAI KQLV++MGG + V
Sbjct: 1278 VLLRFSVKDTGIGIAEDKIGLLFNQFYQIDASTTRQYSGTGLGLAISKQLVKMMGGNIGV 1337

Query: 650  TSKVHCGSTFTFILPYQVSP 669
             S    GS F F L +   P
Sbjct: 1338 KSNEGKGSEFWFTLRFAKRP 1357


>gi|359452259|ref|ZP_09241612.1| hypothetical protein P20495_0351 [Pseudoalteromonas sp. BSi20495]
 gi|358050687|dbj|GAA77861.1| hypothetical protein P20495_0351 [Pseudoalteromonas sp. BSi20495]
          Length = 924

 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 154/329 (46%), Gaps = 75/329 (22%)

Query: 349 VQKAKETEL-NKTIHITEETMRAKQ-------MLATMSHEIRSPLTGVVSMAEILSNTKL 400
           +Q + ETE+ N+T+ + + T++A++        LATMSHEIR+P+ GV+   ++L  T+L
Sbjct: 249 LQNSLETEVHNRTLALEQATLKAERASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTEL 308

Query: 401 DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL 460
           D  Q +L  ++  S   +L +++DILD SK+E+G + ++   F   + ++ V +  ++  
Sbjct: 309 DGAQHRLSTIIRESAFSLLSILDDILDFSKIEAGKLNIDPIPFSVTDTIEEVARVLSSVA 368

Query: 461 QKI-LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAK 519
           +K  L LE  IA D+PI              NLI + I+                     
Sbjct: 369 KKRELDLELSIAPDIPI--------------NLIGDTIRV-------------------- 394

Query: 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHG 579
                +   Y   ++A+K      K+Q        H K   E              V+H 
Sbjct: 395 -----RQVLYNLCSNAIKFTSTDEKTQG-------HVKISVE--------------VAH- 427

Query: 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
           N+ D        +R  V D G G+ +  L  +F  ++Q      R+YGGTGLGL+ICK L
Sbjct: 428 NTADH-----FTLRFCVTDNGKGMTQAQLREIFNPFIQAENSITREYGGTGLGLSICKSL 482

Query: 640 VELMGGRLTVTSKVHCGSTFTFILPYQVS 668
            ELM G + V S +  GS FT  LP+  S
Sbjct: 483 TELMLGTIHVNSHIGIGSEFTVELPFSTS 511



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 19/165 (11%)

Query: 836  KPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA 895
            +P +I ++ + ++    E   K    ILLVEDN +N  V    +  LG+ ++V N+GVE 
Sbjct: 641  QPKQIKKTKTLNNYLNVEQARKANKLILLVEDNLLNQQVLTDQLHILGYGVEVANDGVEG 700

Query: 896  VHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955
            ++  +  NY LIL D+ MP M G      IR            EA + +A+ +       
Sbjct: 701  LNMWRKGNYSLILTDLHMPKMSGYDMVEKIR-----------GEAELLEAIDAQPY---- 745

Query: 956  KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                I+A+TANAL    E C A G++ F++KP+    L+  L+++
Sbjct: 746  ----IVAVTANALKGEKERCLAVGINDFITKPIELNALESTLKRW 786


>gi|390448937|ref|ZP_10234551.1| hybrid sensory histidine kinase [Nitratireductor aquibiodomus RA22]
 gi|389665252|gb|EIM76726.1| hybrid sensory histidine kinase [Nitratireductor aquibiodomus RA22]
          Length = 945

 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 189/431 (43%), Gaps = 71/431 (16%)

Query: 589  TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            T  +   V DTGIGIP + L  +F K+ QV +   R++ GTGLGLAI  +L ELMGG + 
Sbjct: 421  TAQVTVRVEDTGIGIPPDKLEAVFDKFAQVDSSSTRRHEGTGLGLAIAVKLAELMGGSIE 480

Query: 649  VTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSL 708
             TS+V  GSTF F LP+ +           D ++     +  D   A  F         +
Sbjct: 481  ATSEVGKGSTFVFTLPFAI-----------DTANAIQATAPVDVSGARVF---------V 520

Query: 709  FSSNGTSRSKKL-LPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSV------ 761
               N  +R   L   NS GF  A   +G      +F   + Q +       C +      
Sbjct: 521  IDDNAINREILLEQLNSWGFECAAAESG--AVGLAFLQRSAQLDA---RVDCVILDYQMP 575

Query: 762  ----AEVAETLSEPESSFSHSP----EPENETEVSR-GKQCHVETTSWFQNPATESTSHS 812
                A+VA+ + + + + +  P       ++T+ +R   +C +   +   N  T S+   
Sbjct: 576  DMNGADVAKKI-KADPALAGIPLVLLTSVDQTDTARLVSECGI---AAHLNKPTRSSMLL 631

Query: 813  EANREMIQTSKT--NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDN-K 869
            E    ++Q S+   ++P        KP +I  S       +  ++    P  +LV ++ +
Sbjct: 632  ETLVSVMQVSRALPDQPLGDAHAPAKPIQIHASTPLERG-LSGSRGANGPLDVLVAEDNE 690

Query: 870  INVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFE 929
            +N +V   ++  +G    +  NG  AV  ++     L+LMDV MP M+G +AT  IR  E
Sbjct: 691  VNQLVFSQILDGMGLKYRIAGNGKTAVEMLRTLKPRLVLMDVSMPEMNGFEATAAIREHE 750

Query: 930  DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVT 989
                              +SG+       PII +TA+AL    E+C   GMD ++ KP++
Sbjct: 751  -----------------AASGTYT-----PIIGITAHALRGDREKCLGAGMDDYLPKPIS 788

Query: 990  FQKLKECLEQY 1000
             QKL E +  +
Sbjct: 789  PQKLAEKITHW 799



 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 102/167 (61%), Gaps = 8/167 (4%)

Query: 349 VQKAKETELNKTIHITEETMRAK-------QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           + KA +   +  I +  E ++A+       + LA MSHEIR+P+ GV+ MAE+L+ T LD
Sbjct: 245 ISKAHQELHSANISLAAEKIKAQSADRTKSEFLANMSHEIRTPMNGVMGMAELLARTNLD 304

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL- 460
           + Q   + V++ SG  +L +INDILD SK+++G +KL+ A FR RE ++ V    ++ + 
Sbjct: 305 QRQAMFVDVIVKSGTALLTIINDILDFSKIDAGQLKLDEAPFRIREAIEDVAALVSSRVA 364

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           +K L L   +  ++    IGDV R RQI TNL+ NA+KFT  G V I
Sbjct: 365 EKNLELIVRVDPELSASFIGDVGRFRQIATNLVGNAVKFTERGHVLI 411


>gi|152989138|ref|YP_001348375.1| kinase sensor protein [Pseudomonas aeruginosa PA7]
 gi|150964296|gb|ABR86321.1| kinase sensor protein [Pseudomonas aeruginosa PA7]
          Length = 936

 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 123/212 (58%), Gaps = 12/212 (5%)

Query: 309 YVEPVFSKSGETIGVN---------YMGMDVTDQVRKREKMAKLREEIAVQKAKETELNK 359
           ++   F++ GE +G           Y+   +T + +  + +     +I+ +K  E EL +
Sbjct: 389 WIARAFAEGGEPVGEELETEAGLHLYLSYTIT-RYKGEDVLFCAFSDISARKQIEAELAR 447

Query: 360 TIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLV 418
              + +    AK + LATMSHEIR+PL GV+   E+L  T+L R+Q   L  +  S   +
Sbjct: 448 AKLLADAANEAKTLFLATMSHEIRTPLYGVLGTLELLGRTELSRQQAGYLQAIQRSSATL 507

Query: 419 LQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIE 477
           LQLI+D+LD+SK+E+G + LE+ +F P E+ + V+Q+ AAA+  K L L   ++ ++P  
Sbjct: 508 LQLISDVLDVSKIEAGQLDLESMEFAPVELTEEVVQSFAAAAHAKGLQLYACLSPELPER 567

Query: 478 VIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           + G    IRQIL NL+SNA+KFT  G + ++L
Sbjct: 568 MRGAAASIRQILNNLLSNAVKFTDNGHISVRL 599



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 28/138 (20%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +IL+ EDN IN ++ +  ++ LG  +++  +G +A+      ++D++L D+ MP M+G +
Sbjct: 818 RILVAEDNAINQLILRDQLEALGCVVELAFDGRQALQRCLSGDFDVVLTDINMPNMNGYQ 877

Query: 921 -ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            AT L R                            ++R PI+  TANA+ E  E C A G
Sbjct: 878 LATELRR--------------------------RGYRR-PIVGATANAMREERERCLAAG 910

Query: 980 MDSFVSKPVTFQKLKECL 997
           M   + KPV    L+ CL
Sbjct: 911 MSDCLVKPVDLDSLQNCL 928



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            V +   V DTG G+       LF  + QV     +   GTGLGL+I ++L +LM G L 
Sbjct: 608 CVMLTWQVNDTGTGVAAEDQHRLFDPFYQVRRSE-QLLAGTGLGLSISQRLAQLMNGNLR 666

Query: 649 VTSKVHCGSTFTFILPYQ 666
           + S++  GS+F+  LP +
Sbjct: 667 LVSELGLGSSFSLRLPLE 684


>gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 833

 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 100/165 (60%), Gaps = 2/165 (1%)

Query: 350 QKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
           +K +E EL +     E   RAK   LA MSHEIR+P+ G++ M ++L ++ +  EQR+ L
Sbjct: 154 RKLREIELLQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTDLLLDSTIAGEQREYL 213

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLE 467
             + SS + +L +INDILD S++E+G + +E   F    VV    +  A  + QK L L 
Sbjct: 214 QTVKSSAEALLTIINDILDFSRIEAGRLSVEQIDFSLHSVVSETCRALALRASQKGLELY 273

Query: 468 GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            D+A DVP  + GD  R+RQIL NLI NAIKFT  G+V +++  V
Sbjct: 274 YDVAPDVPSVLRGDPTRLRQILVNLIGNAIKFTEHGEVEVRVRCV 318



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 88/146 (60%), Gaps = 15/146 (10%)

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
            P    ++L+VEDN +N  VAK M++ +GHS+ V NNG EA+ A+  +++D++LMDV MPV
Sbjct: 567  PARVLEVLVVEDNPVNQTVAKRMLEHVGHSVTVANNGEEALEAIDNRHFDVVLMDVQMPV 626

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            M G++AT+ IR+ E   +W  A +               +K +PIIAMTA+A+    E C
Sbjct: 627  MGGIEATQAIRAREARRSWVLAGD---------------WKPVPIIAMTAHAMEGDRERC 671

Query: 976  FANGMDSFVSKPVTFQKLKECLEQYF 1001
               GMD +V+KPV  + L   +E+  
Sbjct: 672  LQAGMDDYVAKPVRPEALFAAIERVL 697



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 43/72 (59%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG GI  + L  +F  + Q      RKYGGTGLGLAIC+QL ELMGGR+ V S    
Sbjct: 331 VRDTGCGIAPDKLEAIFGAFSQADNSTTRKYGGTGLGLAICRQLTELMGGRIGVDSVPGA 390

Query: 656 GSTFTFILPYQV 667
           GS F   LP + 
Sbjct: 391 GSRFEVTLPLRA 402


>gi|99080183|ref|YP_612337.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99036463|gb|ABF63075.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 827

 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 168/337 (49%), Gaps = 40/337 (11%)

Query: 190 QALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYN 249
           +A +  L +  T LE+  + +E+LS + + A + +        V+ G   +       ++
Sbjct: 294 RATINTLRKRETELERNQAELEQLSTVAQNASDSI--------VLSGPDQRIFWVNEAFS 345

Query: 250 HFPSLHEEDILGKTDVEIFSG-----AGVKESQDFKREVLEKGLPAKREITFETELFGSK 304
                  ++ +GK   E+ +G     A ++E  ++    + +G    REI          
Sbjct: 346 RMTGYTVDEAVGKRPGELLNGPETDPATIREISEY----ISRGERLHREILN-------- 393

Query: 305 TFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT 364
                    ++KSG+TI V+   + V D+  +   +  +  ++  QK    EL       
Sbjct: 394 ---------YTKSGKTIWVDTNLVPVLDEDGEINMVIGIERDVTSQKQNAAELAVAKVAA 444

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           E+  R K + LA MSHEIR+P+ G++ MA++LS T+L  +Q Q + ++ +S   +L++IN
Sbjct: 445 EQADRTKTEFLANMSHEIRTPMNGIIGMADLLSETELHEDQEQYVQIIRTSSKALLKIIN 504

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKH---VLQTAAASLQKILMLEGDIADDVPIEVIG 480
           DILDL+++ESG + LE   F     +++   +L+  A+  +K L L  + A  +P  V  
Sbjct: 505 DILDLTRMESGKLSLEPVDFDLESCIENAVDILRPVAS--EKGLDLTVNYASGLPRTVRA 562

Query: 481 DVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPF 517
           D  R+RQIL NL+ NA+KFT  G+V +++      P+
Sbjct: 563 DDGRLRQILVNLVGNAVKFTASGRVDVRVLCASTNPY 599



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 28/146 (19%)

Query: 850 EVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVV--NNGVEAVHAVQCQNYDLI 907
           E P+       K+LL EDN+ N ++ +  +  L  S+D++  +NG EAV        DLI
Sbjct: 688 EAPDLDLIYGCKVLLAEDNRTNRLLIRKYLSDL--SVDLIEASNGQEAVELCAHHRPDLI 745

Query: 908 LMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967
           LMD+ MP MDGL ATRLIR                   MP +       + PI+A+TANA
Sbjct: 746 LMDMSMPEMDGLTATRLIR-------------------MPQNP-----HQPPIVALTANA 781

Query: 968 LSESAEECFANGMDSFVSKPVTFQKL 993
            +   E C A GM+ F+SKP+  ++L
Sbjct: 782 FASDREACLAAGMNGFLSKPINKREL 807



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +  DV DTGIG+    L  +F ++ Q  A   R +GGTGLGL I + L + M G +TV S
Sbjct: 601 LTIDVQDTGIGMTSAQLHNIFDRFSQADAATTRSFGGTGLGLTISRLLAKQMDGDITVYS 660

Query: 652 KVHCGSTFTFILPYQVS---PIEENSDDPDDL 680
               GS F+  +  Q     P   ++D+  DL
Sbjct: 661 DPGRGSCFSLHIQCQAPLGLPGHIDADEAPDL 692


>gi|262195026|ref|YP_003266235.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078373|gb|ACY14342.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 965

 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 164/303 (54%), Gaps = 20/303 (6%)

Query: 211 EELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFP---SLHEEDILGKTDVEI 267
           ++L Q L+ A   +  V+  +P  +  +D E R  ++   F    S+    ++G +  ++
Sbjct: 325 KQLEQQLEDAAFMMQTVIDASPDCVIVKDLEGRVLYVNEAFAREVSVPRAKLVGLSAFDV 384

Query: 268 FSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMG 327
              A      + +R V+E G+  + E+    +  G   + ++  P+  +SG   G+  +G
Sbjct: 385 LPRARAAAQVERERMVVEGGVQVRTEVARPRDARGKVIYELFELPMRDRSGALSGLISIG 444

Query: 328 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTG 387
            D+TD  +    ++     +A Q+A+   L KT           + LA +SHE+R+PL+G
Sbjct: 445 RDITDWKQSERALS-----LAHQQAEAARLAKT-----------EFLANISHEVRTPLSG 488

Query: 388 VVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447
           ++ M  +L  T+LD EQ   +  + +SG  +L LIND+LD+S++E+G + L+   F    
Sbjct: 489 IIGMTSLLRTTELDAEQADYVATVEASGSTLLNLINDLLDISRLEAGRIALDEQMFELMP 548

Query: 448 VVKHVLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVG 506
            V H +  A   + +K L L+ DIA+ VP  V+GD LR+ Q+L+NL++NA+KFT +G+V 
Sbjct: 549 CVTHTVNLARPMAREKGLALDLDIAEGVPAFVLGDELRLSQVLSNLVTNALKFTEQGRVL 608

Query: 507 IKL 509
           +K+
Sbjct: 609 VKV 611



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 80/143 (55%), Gaps = 23/143 (16%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            P  +IL+ EDN +N  VA  ++ +LGH  DVV NG +AV A++  NYD+I MDV MPV+D
Sbjct: 724  PALRILVAEDNAVNREVALGLLAKLGHRADVVGNGADAVAALEQHNYDMIFMDVHMPVLD 783

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            GL ATR I S      W            P        +R  IIAMTA+A++   E C +
Sbjct: 784  GLMATREILS-----RW------------PQG------RRPVIIAMTADAMNGDRERCLS 820

Query: 978  NGMDSFVSKPVTFQKLKECLEQY 1000
             GM  +VSKPV+ + L   L ++
Sbjct: 821  AGMQDYVSKPVSMKNLSAMLSRW 843



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 49/77 (63%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           + +R  V+DTGIGIPE+    LF ++ QV     R+YGG GLGLAI + LV  MGGR+ +
Sbjct: 621 IRLRFAVHDTGIGIPEDKREVLFERFTQVDTSTTRRYGGAGLGLAISQHLVNAMGGRIEL 680

Query: 650 TSKVHCGSTFTFILPYQ 666
            S+   GS F+F L  +
Sbjct: 681 QSREGEGSCFSFALSLR 697


>gi|90423379|ref|YP_531749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90105393|gb|ABD87430.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 923

 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/169 (40%), Positives = 107/169 (63%), Gaps = 9/169 (5%)

Query: 349 VQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQL 407
           ++KA+E E+ +      E  RAK   LATMSHEIR+PL G++ MA++L ++ L  +QRQ 
Sbjct: 400 LEKAQEVEIERA----NEVSRAKTDFLATMSHEIRTPLNGILGMAQLLDDSPLSAQQRQW 455

Query: 408 LGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILM 465
           L  +  SG L+L ++NDILDLSK+E+G M+LE+  F P E+++ +    T  A+ + +  
Sbjct: 456 LDAVAQSGSLLLAILNDILDLSKIEAGRMELESIAFSPDELLRTIAAAMTPQAAGKGLAF 515

Query: 466 LEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
           L    A  +P  +IGD  +I Q+L NL+ NA+KFT  G+V + +   P+
Sbjct: 516 LTEYPA--LPARLIGDPAKISQVLLNLVGNAVKFTHSGEVVLSVNWAPD 562



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 22/158 (13%)

Query: 840 ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
           I++     +A     +  P+  ILL EDN++N  VA++M++++GH++D  ++G+ A    
Sbjct: 646 IARPSLRGAATTAAFEAMPQLSILLAEDNEVNAAVARAMLEKMGHTVDHASHGLTAAALA 705

Query: 900 QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
              +YD++L D+ MP +DG+   + IR                             + +P
Sbjct: 706 GQHDYDIVLTDLAMPGLDGIGLAKAIRGLPHATR----------------------REVP 743

Query: 960 IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
           IIA+TAN  +   E+CFA GM  ++ KP   + L++ L
Sbjct: 744 IIAITANVSAGRIEQCFAAGMTGYIEKPFRQETLRQAL 781



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 52/73 (71%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI   A+P +F  + Q  +   R++GG+GLGLAICK++++ MGG++TV S + C
Sbjct: 575 VTDTGIGIARQAVPHVFDPFSQSDSSITRRFGGSGLGLAICKRIIDAMGGKITVESTLGC 634

Query: 656 GSTFTFILPYQVS 668
           GS FT +L + ++
Sbjct: 635 GSVFTVVLDFAIA 647


>gi|322711971|gb|EFZ03544.1| putative histidine kinase HHK6p [Metarhizium anisopliae ARSEF 23]
          Length = 1403

 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 115/188 (61%), Gaps = 11/188 (5%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
           GV  + MDVT ++R RE      E +  Q  ++ +        +E  R K Q LA MSHE
Sbjct: 780 GVIGVIMDVT-ELRDRE------EALLKQSREKRKAVANEAAAKEANRLKSQFLANMSHE 832

Query: 381 IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
           IR+P+TGV+ MAE+LS+  LD EQR  +  + SS   +L +INDILD SKVESG + +E 
Sbjct: 833 IRTPITGVLGMAELLSHMDLDEEQRDYIDNIQSSATSLLTVINDILDFSKVESGRLDVEE 892

Query: 441 AKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVP--IEVIGDVLRIRQILTNLISNAI 497
            +F    VVK V++    +++ K L  + DI  D+   + VIGD  R+RQI+TNL++N+I
Sbjct: 893 VQFSLSLVVKEVVRMLRFAVERKNLDFQSDIGSDIENDMVVIGDPGRVRQIITNLLTNSI 952

Query: 498 KFTPEGKV 505
           KFT +G V
Sbjct: 953 KFTNQGYV 960



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 35/173 (20%)

Query: 842  QSPSSSSAEVPETKPKPKPKILLVED--------NKINVMVAKSMMKQLGHSIDVVNNGV 893
            ++P     ++P T+ + K  IL+VED        + +N M+A   +++LG  +    NG 
Sbjct: 1110 RTPPCVDQDMPRTE-RAKTHILVVEDKNLLTKPISPVNQMIAIKTIQKLGFQVTAAWNGK 1168

Query: 894  EAVHAVQC----QNY--DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMP 947
            EA+  +      QN   D+ILMDV MP++DG K T L+R                     
Sbjct: 1169 EALEYLMATSRGQNMKPDMILMDVQMPIIDGYKCTHLLRHH------------------- 1209

Query: 948  SSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             S      + +PI+AMTA+A+    E+C   GMD +++KPVT   L+  L ++
Sbjct: 1210 -SPYKTLLQDVPIVAMTASAIHGDREKCNKAGMDDYLAKPVTMNILERMLIRW 1261



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 49/74 (66%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            I+  V DTGIGI E+    LF+ + Q  A  AR++GGTGLGL ICK L++LM GR+ + S
Sbjct: 976  IKFVVEDTGIGIQEDVRKRLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILES 1035

Query: 652  KVHCGSTFTFILPY 665
             V  G+  +F +P+
Sbjct: 1036 TVDSGTKASFWIPF 1049


>gi|345870773|ref|ZP_08822723.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
 gi|343921242|gb|EGV31963.1| multi-sensor hybrid histidine kinase [Thiorhodococcus drewsii AZ1]
          Length = 1050

 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/171 (39%), Positives = 109/171 (63%), Gaps = 2/171 (1%)

Query: 341 AKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTK 399
           A+LREEI  +K  E  L +  H  E    AK + L++MSHE+R+P+  ++ + E+L++T+
Sbjct: 375 AELREEIGHRKQVEEALIEAKHRAEAATEAKSRFLSSMSHELRTPMNAIIGVGEVLADTE 434

Query: 400 LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAAS 459
           L R+Q   + ++ S+GD +L +INDILD+SK+ESG + LE+  F   ++V+ +    A  
Sbjct: 435 LGRDQVHFIRILQSAGDDLLNVINDILDISKIESGELTLESIDFDLSQLVEEICDMLAIR 494

Query: 460 LQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            + K L L   +   +P  ++GD  R+RQIL NLI NA+KFT +G V +++
Sbjct: 495 ARTKGLDLALRLGRYLPKRIVGDPHRLRQILINLIGNAVKFTEQGYVSVEV 545



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 26/155 (16%)

Query: 839 RISQSPSSSSAEVPET-----KPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV 893
           +I+  P +SS E   T     +  P  +IL+VED+  N  + ++ + +    +D   NG 
Sbjct: 783 QIATGPGTSSGEQGATTEDDGRSLPAARILVVEDSPHNRTLIQAFLARTPLRVDYAENGA 842

Query: 894 EAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSN 953
           EA+       Y L+LMD+ MPVMDG +AT  IR  E T           E   P+     
Sbjct: 843 EAIEKWNANAYTLVLMDMQMPVMDGYEATTAIREQERT-----------EGRAPT----- 886

Query: 954 HFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
                PI+A+TA AL+   + C A G D+ ++KP+
Sbjct: 887 -----PIVALTAFALTADVDTCLAAGCDAHLAKPI 916



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 48/87 (55%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIPE+    +F  + QV +   R+YGGTGLGL I ++L  LMGG + V S    
Sbjct: 570 IRDTGIGIPEDKQEQIFESFTQVDSSTTRQYGGTGLGLGISRRLATLMGGTIEVHSTPGL 629

Query: 656 GSTFTFILPYQVSPIEENSDDPDDLSD 682
           GS F   L  Q    E  S  P ++ D
Sbjct: 630 GSLFAVHLTVQTGKDETVSAPPAEIPD 656



 Score = 42.0 bits (97), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 8/99 (8%)

Query: 842 QSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
           ++ S+  AE+P+    P+ +IL+V+D ++N ++   M+ + G       +  +A+  +  
Sbjct: 645 ETVSAPPAEIPD---PPEKRILIVDDIEVNRLILGEMLLEWGMDFAEAESAEQALTLLNA 701

Query: 902 QN-----YDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
                  +D++L+D  MP MDGL    +I    D  + D
Sbjct: 702 ARNAGRPFDILLLDYWMPGMDGLDLANVITQDLDFADLD 740


>gi|414072207|ref|ZP_11408157.1| Signal transduction histidine kinase [Pseudoalteromonas sp.
           Bsw20308]
 gi|410805365|gb|EKS11381.1| Signal transduction histidine kinase [Pseudoalteromonas sp.
           Bsw20308]
          Length = 924

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 154/329 (46%), Gaps = 75/329 (22%)

Query: 349 VQKAKETEL-NKTIHITEETMRAKQ-------MLATMSHEIRSPLTGVVSMAEILSNTKL 400
           +Q + ETE+ N+T+ + + T++A++        LATMSHEIR+P+ GV+   ++L  T+L
Sbjct: 249 LQNSLETEVHNRTLALEQATLKAERASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTEL 308

Query: 401 DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL 460
           D  Q +L  ++  S   +L +++DILD SK+E+G + ++   F   + ++ V +  ++  
Sbjct: 309 DGAQHRLSTIIRESAFSLLSILDDILDFSKIEAGKLNIDPIPFSVTDTIEEVARVLSSVA 368

Query: 461 QKI-LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAK 519
           +K  L LE  IA D+PI              NLI + I+                     
Sbjct: 369 KKRELDLELSIAPDIPI--------------NLIGDTIRV-------------------- 394

Query: 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHG 579
                +   Y   ++A+K      K+Q        H K   E              V+H 
Sbjct: 395 -----RQVLYNLCSNAIKFTSTDEKTQG-------HVKISVE--------------VAH- 427

Query: 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
           N+ D        +R  V D G G+ +  L  +F  ++Q      R+YGGTGLGL+ICK L
Sbjct: 428 NTADH-----FTLRFCVTDNGKGMTQAQLREIFNPFIQAENSITREYGGTGLGLSICKSL 482

Query: 640 VELMGGRLTVTSKVHCGSTFTFILPYQVS 668
            ELM G + V S +  GS FT  LP+  S
Sbjct: 483 TELMLGTIHVNSHIGIGSEFTVELPFSTS 511



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 19/165 (11%)

Query: 836  KPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA 895
            +P +I ++ + ++    E   K    ILLVEDN +N  V    +  LG+ ++V N+GVE 
Sbjct: 641  QPKQIKKTKTLNNYLNVEQARKANKLILLVEDNLLNQQVLTDQLHILGYGVEVANDGVEG 700

Query: 896  VHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955
            ++  +  NY LIL D+ MP M G      IR            EA + +A+ +       
Sbjct: 701  LNMWRKGNYSLILTDLHMPKMSGYDMVEKIR-----------GEAELLEAIDAQPY---- 745

Query: 956  KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                I+A+TANAL    E C A G++ F++KP+    L+  L+++
Sbjct: 746  ----IVAVTANALKGEKERCLAVGINDFITKPIELNALESTLKRW 786


>gi|170728964|ref|YP_001762990.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169814311|gb|ACA88895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 948

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/143 (47%), Positives = 92/143 (64%), Gaps = 2/143 (1%)

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           E T RAK + LA MSHEIR+P+ GV+ M  +LS T+LD++Q+  L +   S   +L LIN
Sbjct: 411 EATGRAKSEFLACMSHEIRTPMNGVLGMLSLLSRTELDQDQQHHLEIAQGSAKSLLTLIN 470

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDV 482
           DILD SK+ESG + LE+ +F   + +  ++Q  A   Q K L L  DI+   P  + GD 
Sbjct: 471 DILDFSKIESGKLNLESIEFNLHQTLDELIQPLAIRAQEKSLELTLDISQIKPANITGDP 530

Query: 483 LRIRQILTNLISNAIKFTPEGKV 505
            RI Q+LTNLI NAIKFTP+G +
Sbjct: 531 GRITQVLTNLIGNAIKFTPKGSI 553



 Score = 99.8 bits (247), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 83/147 (56%), Gaps = 25/147 (17%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV----QCQNYDLILMDVCMP 914
            +P++LL EDN +N +VA+ ++K+ G  I++VN+G++A+ A+    Q   Y LI MD  MP
Sbjct: 810  QPRLLLAEDNMVNQLVAEGIIKEFGLEIEIVNDGIQALKALSDSSQDNPYHLIFMDCQMP 869

Query: 915  VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE 974
             +DG + T  IR            EAG            H+K +PIIAMTANA+    E+
Sbjct: 870  KLDGYQTTAKIRD----------GEAG-----------EHYKNLPIIAMTANAMVGDKEK 908

Query: 975  CFANGMDSFVSKPVTFQKLKECLEQYF 1001
            C A GM+ ++SKP+  + +K  L  Y 
Sbjct: 909  CLAIGMNDYISKPLEPEHIKTALLTYL 935



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIG+ ++ L  +F+ + Q      R YGGTGLGL+I K L  LM G ++VTSK + 
Sbjct: 572 IQDTGIGMKQDKLENIFQAFSQADNSTTRHYGGTGLGLSIAKHLSHLMNGDISVTSKENI 631

Query: 656 GSTFTFILPYQV 667
           GS F   L  Q+
Sbjct: 632 GSHFVVDLEIQL 643


>gi|189424608|ref|YP_001951785.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420867|gb|ACD95265.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1199

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/212 (38%), Positives = 116/212 (54%), Gaps = 24/212 (11%)

Query: 303 SKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
           S TF +   PVF   G    +  +G D+T +        KL E+ A+Q A E ++     
Sbjct: 649 SITFDVIKLPVFEPDGSRKALVVVGRDITAR--------KLTEQ-ALQDATEAKM----- 694

Query: 363 ITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
                    Q LA MSHEIR+P+ GV+ M  +L  + L+ EQ+Q + V+ +SGDL+L +I
Sbjct: 695 ---------QFLANMSHEIRTPMNGVIGMTGLLQESGLNPEQQQYVEVIRASGDLLLSII 745

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGD 481
           NDILD SK+E+G ++LE   F    ++  V+   +   Q K L LE  +    P  + GD
Sbjct: 746 NDILDFSKMEAGRLELEQTPFDVSMILNEVIDLVSTQAQSKGLALERHLELAQPCYLKGD 805

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
           V R+RQIL NL+ NAIKFT  G V ++  V P
Sbjct: 806 VTRLRQILLNLLVNAIKFTESGSVTLQARVEP 837



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 21/140 (15%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++LLVEDN  N +VA++++++LGH++ +  NG EA+  +     DL+LMD  MPVMDG +
Sbjct: 945  RLLLVEDNATNQLVARTILEKLGHTVVLAGNGKEALELLHMIPVDLVLMDCQMPVMDGFE 1004

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR IR          A EAG EQ           + +P++AMTA+A +E  E   A GM
Sbjct: 1005 ATRRIR----------AGEAG-EQN----------RLLPVLAMTAHAFAEDRERSRAAGM 1043

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D +++KPV    L + +  +
Sbjct: 1044 DDYLTKPVQLTTLSKAVTTW 1063



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 45/74 (60%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           + C V DTGIGI E  L TLF  + Q  A   RKYGGTGLGLAI + L +LM G + V S
Sbjct: 845 LLCQVRDTGIGISEQQLETLFDPFTQADASITRKYGGTGLGLAISRHLTQLMEGEIGVDS 904

Query: 652 KVHCGSTFTFILPY 665
               G+TF   +P+
Sbjct: 905 HQGQGTTFRLSIPF 918


>gi|189425738|ref|YP_001952915.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421997|gb|ACD96395.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 827

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 96/139 (69%), Gaps = 3/139 (2%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ GV+ M ++L  T+L  EQ+  L  + +S D +L +INDILDLSK+
Sbjct: 448 EFLANMSHEIRNPMNGVIGMLQLLRFTELTDEQKDYLSAIETSADDLLAIINDILDLSKI 507

Query: 432 ESGVMKLEAAKFRPREVVKHVL--QTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           E+G ++LE ++F  R  +  VL  QT+ A  +K + +E  + + +P+EV GD LR++Q+L
Sbjct: 508 EAGKIELEISRFSLRRCINDVLLMQTSRA-FEKGVQVEARLDEQLPLEVYGDQLRVKQVL 566

Query: 490 TNLISNAIKFTPEGKVGIK 508
            NL+ NA+KFT EG + I+
Sbjct: 567 LNLLGNAVKFTEEGTISIE 585



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 50/77 (64%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           ++  V DTGIG+    L  +F  ++Q      R++GGTGLGL IC+QL ELMGGR++ TS
Sbjct: 598 VQITVSDTGIGMSPEVLGKVFDPFIQADVCTTRRFGGTGLGLTICRQLAELMGGRISATS 657

Query: 652 KVHCGSTFTFILPYQVS 668
           +   GS F   LP+++S
Sbjct: 658 EEGKGSQFYLELPFRLS 674



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 33/155 (21%)

Query: 844 PSSSSAEVPETKPK-----PKP------KILLVEDNKINVMVAKSMMKQLGHSIDVVNNG 892
           P   S +V E +P      P P       +L+VEDN +N   A  +++ +G+   +  NG
Sbjct: 670 PFRLSTQVVEAEPAASVFGPTPVTSKSQTVLIVEDNLLNQRTAVLLLQNMGYHTKLAGNG 729

Query: 893 VEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
            EAV   +    D+ILMD+ MPV  G +A +LIR+ E         + G+          
Sbjct: 730 EEAVAVWRQGGIDVILMDIHMPVCSGCEALQLIRAEE--------TKTGVHT-------- 773

Query: 953 NHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987
                 PIIA+TA+AL  + ++    G D ++SKP
Sbjct: 774 ------PIIALTADALKGTDKKLLEAGFDGYLSKP 802


>gi|385809737|ref|YP_005846133.1| Signal transduction histidine kinase [Ignavibacterium album JCM
           16511]
 gi|383801785|gb|AFH48865.1| Signal transduction histidine kinase [Ignavibacterium album JCM
           16511]
          Length = 1115

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/163 (42%), Positives = 105/163 (64%), Gaps = 3/163 (1%)

Query: 344 REEIAVQKA-KETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           R +IA Q   K  EL+K I  TE+  +AK + LA MSHEIR+P+ GV+ M  +L +T L 
Sbjct: 435 RNQIAEQLLRKNIELDKAIKETEQAAKAKSEFLALMSHEIRTPMNGVIGMTGLLLDTMLT 494

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASL 460
             QR+ +  +  SG+ +L +INDILD +K+ES  ++LE+  F   E ++  L+  ++ + 
Sbjct: 495 DAQREYVNTIRLSGEQLLVIINDILDFTKIESEKLELESIPFLLNECIEDSLELISSKAA 554

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
           +K + +   + DDVP  + GDV R+RQILTNLI NA+KFT +G
Sbjct: 555 EKDIEIYYRMTDDVPAVITGDVTRLRQILTNLIGNAVKFTSKG 597



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 24/172 (13%)

Query: 830  ICEMQEKPDRISQSPSSSSAEVPETKPKP-KPKILLVEDNKINVMVAKSMMKQLGHSIDV 888
            + ++   P    +S    S EV E+  +P + KILL EDN IN MVA  M+++LG+  D+
Sbjct: 822  VIDLTITPRTEDKSLKQISPEVAESLSEPTRLKILLAEDNNINQMVASRMIERLGYKADI 881

Query: 889  VNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948
            V+NG EAV A    +YD+I MD+ MP MDG++A  +I+                      
Sbjct: 882  VSNGKEAVEAAANIDYDIIFMDILMPEMDGIEACNVIKD--------------------- 920

Query: 949  SGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                N   +  I+AMTANA++   E     GMD ++SKPV  + L+  L+++
Sbjct: 921  --QLNKEHKPVIVAMTANAMAGDEENYIKAGMDDYLSKPVNLEDLRRVLDKW 970



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP++ +  LF+ + QV +   R YGGTGLGL I K+LVE+MGG + V S+   
Sbjct: 619 VRDTGIGIPKDKMDRLFKPFSQVDSSTTRSYGGTGLGLVISKKLVEMMGGEIKVESEEGQ 678

Query: 656 GSTFTFILPYQVSPIE 671
           GS F F +   +  ++
Sbjct: 679 GSKFIFTINTTIPTVD 694


>gi|67525287|ref|XP_660705.1| hypothetical protein AN3101.2 [Aspergillus nidulans FGSC A4]
 gi|40744496|gb|EAA63672.1| hypothetical protein AN3101.2 [Aspergillus nidulans FGSC A4]
 gi|259485951|tpe|CBF83407.1| TPA: Histidine kinase D5 [Source:UniProtKB/TrEMBL;Acc:Q6WJ27]
            [Aspergillus nidulans FGSC A4]
          Length = 1879

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 107/172 (62%), Gaps = 2/172 (1%)

Query: 346  EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
            +I  +K  E ELNK +      M +K +  + MSHEIR+PL G++     + +T LD +Q
Sbjct: 1178 DINDRKNLERELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTSLDTDQ 1237

Query: 405  RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKI 463
            R++L  + +S   + +L+++ILD+S+VE+G M L  + F  R V++ V+ T ++ ++ K 
Sbjct: 1238 RRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSLVGSWFHVRSVIEDVIDTVSSRAIDKG 1297

Query: 464  LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
            L +   +  DVP  VIGD  RIRQIL NL+ NA+KFT +G++ I+  +  +P
Sbjct: 1298 LEMNYLMDVDVPPMVIGDRFRIRQILINLVGNAVKFTAQGEIHIRCSIYHDP 1349



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 24/140 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNG---VEAVHAVQCQNYDLILMDVCMPVMD 917
            ++LLVED++ N MV    + ++    +   +G    + V + +   Y LI+ D+ MP+ +
Sbjct: 1733 RVLLVEDDETNRMVMMKYLDKIKVMAETAGDGQQCTDMVFSKEPGYYSLIICDIQMPIKN 1792

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +  R IR +E                       NH+ +IPI+A++ANA+++  E+   
Sbjct: 1793 GYETCREIRKWE---------------------MKNHYPQIPIMALSANAMTDQIEDAAR 1831

Query: 978  NGMDSFVSKPVTFQKLKECL 997
             G + +V+KP+   +L + +
Sbjct: 1832 AGFNDYVTKPIKHNELGKMM 1851



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 19/104 (18%)

Query: 579  GNSMDEDLEATVWIRCDVY-------------------DTGIGIPENALPTLFRKYMQVS 619
            GN++    +  + IRC +Y                   DTG G        L +++ Q+ 
Sbjct: 1328 GNAVKFTAQGEIHIRCSIYHDPNAIHKPTEILMNFDVVDTGKGFSAQDAERLMQRFSQLG 1387

Query: 620  ADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
             + +++  G+GLGL + KQLVE+ GGRLT +SK   G+ F+F +
Sbjct: 1388 TNASQQNAGSGLGLFLSKQLVEMHGGRLTPSSKEGQGAKFSFFV 1431


>gi|379011612|ref|YP_005269424.1| multi-sensor hybrid histidine kinase [Acetobacterium woodii DSM
           1030]
 gi|375302401|gb|AFA48535.1| multi-sensor hybrid histidine kinase [Acetobacterium woodii DSM
           1030]
          Length = 1028

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 157/306 (51%), Gaps = 29/306 (9%)

Query: 212 ELSQI-LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSL---HEEDILGKTDVEI 267
           EL  I L  +  F+  VL N    +  +D + RY ++  H+  +   + ED +GK   EI
Sbjct: 145 ELKNIELANSRQFMESVLDNLQAAVYVKDLDGRYTYLNKHWEDMTGFNREDCIGKRAKEI 204

Query: 268 FSG--AGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNY 325
           ++       +  D +   L+K      EI+    +   +T+L    P+  ++G  +G   
Sbjct: 205 YNNELGSTYDQNDLEVIRLQKT-QISEEISVNQAV--KRTYLSTKVPM-EQNGNIVG--- 257

Query: 326 MGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSP 384
                         +  +  +I+++K  E  L +   + EE  ++K   LA MSHEIR+P
Sbjct: 258 --------------LCSISTDISLRKQMEEALFEAKMVAEEAAKSKSDFLANMSHEIRTP 303

Query: 385 LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
           +  ++ M  ++  T L  +Q+  +  +  SG  +L +INDILD SK+E+G + +EA  F+
Sbjct: 304 MNAILGMGYLIEKTDLSEKQKDYIDKIKQSGQHLLGIINDILDFSKIEAGKLNIEAINFK 363

Query: 445 PREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
             EV+ ++   ++   L+K L L  DI  +VP E+ GD LRI QIL N ++NAIKFT  G
Sbjct: 364 LDEVLDNLTNCSSEKCLEKGLELVFDIGPEVPNELCGDPLRIGQILINYVNNAIKFTDSG 423

Query: 504 KVGIKL 509
           ++ +K+
Sbjct: 424 EIIVKI 429



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 101/187 (54%), Gaps = 34/187 (18%)

Query: 826  EPQKICEMQEKPDRISQSPS-------SSSAEVPETKPKP---KPKILLVEDNKINVMVA 875
            +P  +  + E   RI  +P        S++A   + K +P   K KILLVEDN+IN  VA
Sbjct: 640  KPVNLWILYETTLRILSNPPQNGANEISTAAVSTQNKNQPELFKSKILLVEDNEINQQVA 699

Query: 876  KSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935
              ++++ G ++DV +NG +A+  V   NYDL+LMD+ MP++DGL+AT+ IR         
Sbjct: 700  IEILEEGGFAVDVADNGQKAIAMVSADNYDLVLMDMQMPILDGLEATKQIR--------- 750

Query: 936  AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKE 995
                            +  FK + IIAMTANA++   E C A GM+ ++ KP+   +L +
Sbjct: 751  ---------------MNRQFKDLVIIAMTANAMTGDRERCIAGGMNDYLPKPIDPSELFK 795

Query: 996  CLEQYFP 1002
             + Q+ P
Sbjct: 796  MMAQWIP 802



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           +++L     ++ +V+DTGIG+  +    LF+ + Q      RKYGGTGLGLAI K L +L
Sbjct: 432 EQELTNEFILKFEVHDTGIGLTNDQRSKLFQSFHQGDTSTTRKYGGTGLGLAISKNLADL 491

Query: 643 MGGRLTVTSKVHCGSTFTFILPYQVS-PIEE 672
           MGG + V S +  GS F F   +  S  IEE
Sbjct: 492 MGGEVGVESIIGKGSNFWFTTRFTTSQQIEE 522


>gi|430748007|ref|YP_007207136.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
           18658]
 gi|430019727|gb|AGA31441.1| signal transduction histidine kinase [Singulisphaera acidiphila DSM
           18658]
          Length = 1098

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/173 (42%), Positives = 105/173 (60%), Gaps = 2/173 (1%)

Query: 335 RKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAE 393
           R R +  + REE    +A E E+       E+  +AK   LATMSHEIR+P+  ++ M E
Sbjct: 404 RLRAEWVQAREESTRARAAEAEVRVAKDAAEQATQAKSTFLATMSHEIRTPMNAIIGMTE 463

Query: 394 ILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL 453
           +  +T L  EQRQ L ++  S + +L LINDILDLSK+E+G + LE+  F   E + + +
Sbjct: 464 LTLDTDLTPEQRQYLELVKESSESLLTLINDILDLSKIEAGKLDLESIDFSLHESLGNTM 523

Query: 454 QTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           +  A  + +K L L   IA DVP  ++GD  R+RQI+ NL+ NAIKFT  G+V
Sbjct: 524 KALALRAHKKRLELAYHIAPDVPETLVGDPGRLRQIVVNLVGNAIKFTEHGEV 576



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 24/153 (15%)

Query: 852  PETKPKPKP--KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909
            P   P P    +ILLVEDN +N  +A  ++++ GH + V  NG E + A + Q +DLILM
Sbjct: 829  PGDLPAPSRGLRILLVEDNPVNQTLATILLEKRGHKVIVACNGKEGLAAWEKQEFDLILM 888

Query: 910  DVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALS 969
            DV MP MDGL+ T  IR+ E                    G+  H   IPI+AMTA+A+ 
Sbjct: 889  DVQMPEMDGLEVTACIRARE-------------------RGTGRH---IPIVAMTAHAIK 926

Query: 970  ESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
               E C   GMD +VSKP+    L   +    P
Sbjct: 927  GDREHCLQAGMDGYVSKPIEVGDLFRAIADVVP 959



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 45/78 (57%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V +   V DTG+GIP      +F  ++Q  +   R+YGGTGLGL I  +L+ LM GR+ V
Sbjct: 590 VCLHFRVTDTGVGIPRERQDLIFDAFIQADSSTTRQYGGTGLGLTISSRLIALMRGRVWV 649

Query: 650 TSKVHCGSTFTFILPYQV 667
            S+   GSTF F +   V
Sbjct: 650 ESEAGQGSTFHFTMRLGV 667


>gi|392373817|ref|YP_003205650.1| Sensor protein [Candidatus Methylomirabilis oxyfera]
 gi|258591510|emb|CBE67811.1| putative Sensor protein [Candidatus Methylomirabilis oxyfera]
          Length = 1049

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/164 (43%), Positives = 102/164 (62%), Gaps = 10/164 (6%)

Query: 348 AVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQ 406
           A+Q+AK         + E   RAK + LA MSHEIR+PL  ++ M E+  +T L  EQR+
Sbjct: 505 AMQQAKS--------VAEAASRAKGEFLAKMSHEIRTPLNAIIGMTELTLDTALTTEQRE 556

Query: 407 LLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKI-LM 465
            L V+ SS + +L +INDILDLS++E+G M +E   F  REVV+ V +  +   QK  L 
Sbjct: 557 FLQVVQSSSEALLTVINDILDLSRIEAGQMAIEETAFHLREVVEGVAEVLSIRAQKKGLE 616

Query: 466 LEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L   +   +P  V+GD +R+RQ+L NL+ NAIKFT  G+V I++
Sbjct: 617 LTCYVDPALPSRVLGDPMRLRQVLVNLVGNAIKFTERGEVTIQV 660



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 89/152 (58%), Gaps = 22/152 (14%)

Query: 851  VPETK-PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909
            +PE + P  +  ILLVEDN  N  + + +++++G+ + +  NG  AV+AV+   YDLILM
Sbjct: 901  IPEARRPTLQRHILLVEDNVDNQNLVRRILEKVGYWVVIAGNGAAAVNAVRQARYDLILM 960

Query: 910  DVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALS 969
            DV MP MDG +ATR IRS+E         E G+              R+PIIAMTA+A++
Sbjct: 961  DVQMPEMDGFEATRAIRSWER--------EHGV-------------GRVPIIAMTAHAIA 999

Query: 970  ESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
               E+C   GMD ++SKP+  Q L + + +Y 
Sbjct: 1000 GYREQCLEQGMDDYLSKPLKKQVLLDTVGRYL 1031



 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 47/70 (67%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           + +   V DTGIGIP +    +F  + Q  A  AR++GG+GLGL+I K L+ELMGGR+ V
Sbjct: 671 IGVHISVADTGIGIPTHQQARIFDPFAQADATTARRFGGSGLGLSISKALMELMGGRIWV 730

Query: 650 TSKVHCGSTF 659
            S+V  GSTF
Sbjct: 731 ESEVGKGSTF 740


>gi|182414033|ref|YP_001819099.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177841247|gb|ACB75499.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 812

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 151/300 (50%), Gaps = 35/300 (11%)

Query: 213 LSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFI----YNHFPSLHEEDILGKTDVEIF 268
           LS +L+  D+ ++F           +D+  R+R I       F       ++GKTD + F
Sbjct: 148 LSGLLEHIDDHVYF-----------KDRASRFRRISTSLARKFGLRDPAAVVGKTDFDFF 196

Query: 269 SGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVE-PVFSKSGETIGVNYMG 327
           +    + +   ++ ++  G P   +I  E+    ++T+ +  + P+ +++GE IG   + 
Sbjct: 197 TREHAEPAFADEQAIIRTGEPIVGKIERESWSGNTETWGLTTKVPLRNRAGEIIGTCGIT 256

Query: 328 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTG 387
            DVT   R  +++   +         ++E                 LA MSHEIR+P+ G
Sbjct: 257 KDVTALKRTEQQLQAAKLAAEAAARAKSEF----------------LANMSHEIRTPMNG 300

Query: 388 VVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447
           V+ M  +L +TKLD EQRQ    + +S + ++ +INDILD SK+E+G +  E   F   E
Sbjct: 301 VIGMTGLLLDTKLDPEQRQFAESVRNSAENLMTVINDILDFSKIEAGKLLFEELDFDLVE 360

Query: 448 VVKHVLQTAAASLQ--KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
            ++  L   A   Q   I +++G IA  VP  + GD  R+RQILTNL+ NAIKFT  G+V
Sbjct: 361 TIEGTLDMLAERAQGKGIELIDG-IAPQVPRYLRGDPGRLRQILTNLLGNAIKFTEHGEV 419



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 24/166 (14%)

Query: 839  RISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
            R  ++P+ S     +T   P  + L+ EDN++N  VA + +K+L  S+DVV NG+E + A
Sbjct: 658  RSYETPARSKPNAADTPEPPILRALVAEDNQVNQTVAAAQLKKLRCSVDVVANGLEVLEA 717

Query: 899  VQCQNYDLILMDVCMPVMDGLKATRLIRSFED----TGNWDAAAEAGIEQAMPSSGSSNH 954
            +    YD+I MD  MP MDG +ATR IR  E       +W A A                
Sbjct: 718  LSRAPYDVIFMDCQMPEMDGYEATRAIRQREQDRIHPCHWKAPAY--------------- 762

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                 IIAMTA+A+    E+C A GMD +VSKP+   +L+  +E++
Sbjct: 763  -----IIAMTAHAMHGDREKCLAVGMDDYVSKPMRTAELQAAIERW 803



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 48/75 (64%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R DV DTGIGI  +    LF+ + Q  +   R+YGGTGLGLAI KQLV +M G + V S
Sbjct: 435 VRFDVTDTGIGISRDVQARLFQSFEQADSSTTRRYGGTGLGLAISKQLVAMMHGEIGVQS 494

Query: 652 KVHCGSTFTFILPYQ 666
           +   GSTF F + +Q
Sbjct: 495 EAGVGSTFWFTVEFQ 509


>gi|357517985|ref|XP_003629281.1| Histidine kinase [Medicago truncatula]
 gi|355523303|gb|AET03757.1| Histidine kinase [Medicago truncatula]
          Length = 1173

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 137/284 (48%), Gaps = 39/284 (13%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEIL-SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSK 430
           Q LA MSHE+R+P+  V+ + +IL S+ +L  EQ   +  +      +L L+N+ILD+SK
Sbjct: 474 QFLANMSHELRTPMAAVIGLLDILLSDDRLTNEQCATVTQIRKCSTALLHLLNNILDISK 533

Query: 431 VESGVMKLEAAKFR-PREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           VESG + LE A+F   RE+   V   +   +   + +  D++DD+P  V GD  R+ QI 
Sbjct: 534 VESGKLVLEEAEFDFGRELEGLVDMFSVQCINHNVEIILDLSDDMPKLVRGDSARVVQIF 593

Query: 490 TNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEK-HQPKSQTA 548
            NLI+N+IKFT  G + ++            G  +   +Y  + +   E+K      +T 
Sbjct: 594 ANLINNSIKFTLSGHIILR------------GWCENPNSYGDSENFTLEQKPFGCSRKTK 641

Query: 549 SDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608
             Q+  H KK                      + + D +  +W   D  DTG GI  +  
Sbjct: 642 MKQHENHSKK----------------------ASNIDNKMILWFEVD--DTGCGIDPSKW 677

Query: 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
            ++F  + Q      R +GGTGLGL I + LV  MGG + +  K
Sbjct: 678 DSVFESFEQADLSTTRLHGGTGLGLCIVRSLVNKMGGEIKIVKK 721



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 40/165 (24%)

Query: 845  SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ-- 902
            S SS  +   K     +ILL ED  +   VA  M++++G ++  V +G +AV A+     
Sbjct: 1014 SGSSKAMNGKKSLEGLRILLAEDTAVIQRVATIMLEKMGATVVAVGDGQQAVDALNGMPG 1073

Query: 903  ----------------NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAM 946
                            +YDLILMD  MP MDG +AT+ IR  E                 
Sbjct: 1074 VERNTITSQTEILSFPSYDLILMDCQMPKMDGYEATKEIRKSE----------------- 1116

Query: 947  PSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
               G+S H   IPI+A+TA+A+S    +C   GMD++++KP+ F+
Sbjct: 1117 --IGTSFH---IPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFK 1156


>gi|94267582|ref|ZP_01290931.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451940|gb|EAT02659.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 115/185 (62%), Gaps = 17/185 (9%)

Query: 328 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTG 387
           M++ +  R+ E+ A   EE+A ++A+   + K+           + LA MSHEIR+P+ G
Sbjct: 136 MELRESNRRLEEAAVQAEELA-RQAQAANIAKS-----------EFLANMSHEIRTPMNG 183

Query: 388 VVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447
           V+ MA +L +  L  EQ   + V+I+SG+ +L+LIN ILD SK+E+G ++L+   F PRE
Sbjct: 184 VIGMASLLLSEDLTAEQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRE 243

Query: 448 VVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK 504
           +V+ V   LQ  AA+  + L L  +I+  +P  V GD +R+RQ+L NL+ NAIKFT  G 
Sbjct: 244 LVQEVVLLLQPQAAA--QNLALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGG 301

Query: 505 VGIKL 509
           V I+L
Sbjct: 302 VAIEL 306



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 51/70 (72%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGIP   +  LF+++ Q+     RKYGGTGLGLAIC++LVELMGG + V S+V  
Sbjct: 324 VKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVESEVGK 383

Query: 656 GSTFTFILPY 665
           GSTF F +P+
Sbjct: 384 GSTFWFTVPF 393


>gi|440749012|ref|ZP_20928262.1| PAS/PAC domain protein [Mariniradius saccharolyticus AK6]
 gi|436482714|gb|ELP38812.1| PAS/PAC domain protein [Mariniradius saccharolyticus AK6]
          Length = 1049

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 96/148 (64%), Gaps = 1/148 (0%)

Query: 365 EETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIND 424
           E ++   + LA MSHEIR+PL GV+  +++L  T L+  Q+  L  +I SG+L+L LIND
Sbjct: 549 EASVAKSEFLANMSHEIRTPLNGVIGFSDLLMKTNLEDNQKGYLKSIIQSGNLLLGLIND 608

Query: 425 ILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVL 483
           ILD SK+E+G ++L    F  R+V    L+     + +K L L+ ++  DVP  V GD+ 
Sbjct: 609 ILDFSKIEAGKLELSQEWFNVRDVAAETLKIIQPVVDEKKLQLQLNVNTDVPKFVQGDLT 668

Query: 484 RIRQILTNLISNAIKFTPEGKVGIKLYV 511
           RI+QIL NL+SNA KFT EGK+ +++ V
Sbjct: 669 RIKQILINLLSNAGKFTHEGKIAMEISV 696



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 41/176 (23%)

Query: 827  PQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSI 886
            P  I E +EK     ++P+S          K   K+LLV+DN +N+++AKS++K+L  S 
Sbjct: 796  PAIIVEREEK-----ETPAS----------KGTYKVLLVDDNPVNMLLAKSIVKKLLPSS 840

Query: 887  DV--VNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQ 944
            ++    NG EAV   + +  D+I MD+ MP + G +AT+ IR  E               
Sbjct: 841  EISEAYNGAEAVTQYKREVPDIIFMDIQMPEVSGYEATKQIRVLEQD------------- 887

Query: 945  AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                       +  PI+A+TA  +    + C   GMD ++SKPV    +   +E+Y
Sbjct: 888  -----------RHTPIVALTAGTVKGEYDRCIEAGMDDYLSKPVLVSDIAGMIEKY 932



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI +    T+F  + Q      RKYGGTGLGL IC +L+ELM  +L + ++V  
Sbjct: 712 VIDTGIGISKEKQQTIFEAFAQEDTSTTRKYGGTGLGLTICSKLLELMKSKLELETEVGQ 771

Query: 656 GSTFTFILPYQVSPIEENSDDP 677
           GSTF F L     P  E  ++P
Sbjct: 772 GSTFFFTLEL---PFAEQIEEP 790


>gi|404496568|ref|YP_006720674.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing [Geobacter metallireducens GS-15]
 gi|418067530|ref|ZP_12704870.1| multi-sensor hybrid histidine kinase [Geobacter metallireducens
           RCH3]
 gi|78194171|gb|ABB31938.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing [Geobacter metallireducens GS-15]
 gi|373558628|gb|EHP84960.1| multi-sensor hybrid histidine kinase [Geobacter metallireducens
           RCH3]
          Length = 1313

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 124/197 (62%), Gaps = 14/197 (7%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIA-VQKAKETELNKTIHITEETM 368
           + P++ + GE    +++G  V +++   EK  KL+EE+A + + ++   ++     E+  
Sbjct: 775 ISPIYDEKGEI--THFVG--VREEI---EKQKKLQEELANIAQLEKVARDRA----EQAN 823

Query: 369 RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           RAK + LA MSHEIR+PL  ++ M+++L+ T+LD EQ   L V+ S+G+ +  LINDILD
Sbjct: 824 RAKSEFLAGMSHEIRTPLNAIIGMSDLLAETRLDGEQSGYLSVVHSAGETLQGLINDILD 883

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           LSK+E+G+++L++  F  R+ ++ +   T+  +  K +     +   VP  ++GD LR+R
Sbjct: 884 LSKIEAGMLQLDSVPFSLRDCIRQLTDITSVKASSKGVTYSFSVKSAVPDWLMGDSLRLR 943

Query: 487 QILTNLISNAIKFTPEG 503
           Q+L NL+ NA+KFT  G
Sbjct: 944 QVLINLVGNAVKFTDSG 960



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 50/82 (60%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            +A V IR  V DTGIGI    L T+F  + Q  +   R+YGGTGLGLAI + L  +MGG 
Sbjct: 974  DAEVLIRFSVADTGIGIAPEKLDTIFESFSQADSSTTRRYGGTGLGLAISRHLAGMMGGE 1033

Query: 647  LTVTSKVHCGSTFTFILPYQVS 668
            + V S V  GS F F +P+ +S
Sbjct: 1034 IGVESTVGKGSCFRFTVPFAIS 1055



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 23/152 (15%)

Query: 850  EVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909
            ++P  K      IL+V+DN  N  V  +  ++  H+++   NG EA+  ++   YD++ M
Sbjct: 1066 QLPGDKLGRPLSILVVDDNLANRTVLTAYFRRTEHTVECAVNGEEALAKIKGGGYDVVFM 1125

Query: 910  DVCMPVMDGLKATRLIRSFE-DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANAL 968
            D+ MPVMDG  A RL+R +E +TG                         +P+IA+TANAL
Sbjct: 1126 DMEMPVMDGYTAVRLVREWERETGR----------------------APLPVIALTANAL 1163

Query: 969  SESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             E        G  + ++KP+   KL E + +Y
Sbjct: 1164 KEDQLRSLDAGCTAHLTKPIKKDKLLEIVGEY 1195


>gi|39937477|ref|NP_949753.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|192293263|ref|YP_001993868.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|39651336|emb|CAE29858.1| sensor histidine kinase with PAS/PAC and response regulator
           receiver domains [Rhodopseudomonas palustris CGA009]
 gi|192287012|gb|ACF03393.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 873

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 117/210 (55%), Gaps = 25/210 (11%)

Query: 304 KTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHI 363
           + + +  +P+F  +GE  G   +G DVT++ R  +  A+        +AK +        
Sbjct: 330 RLWSLTAKPMFDAAGEFAGYRGVGRDVTERWRAEQAEAE-------NRAKSS-------- 374

Query: 364 TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
                     LA MSHEIR+P+ GV+ +A  L  TKLD EQ+Q +  +  SGD +L+++N
Sbjct: 375 ---------FLAMMSHEIRTPMNGVLGLANSLLETKLDPEQQQAVTTIRDSGDDLLRILN 425

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDV 482
           DILDLSK+E+G ++ E A F P  +V+ V       ++ K + L+ DI   +P  + GD 
Sbjct: 426 DILDLSKLEAGRLEFEQADFSPTTLVESVRAIIEPEVRGKGIELKVDIDPRLPPSLNGDA 485

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            RIRQ+L NL +NA+KFT +G + I L  V
Sbjct: 486 ARIRQVLLNLAANAVKFTEQGSIAIVLTCV 515



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 23/128 (17%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           ++L+ ED+  N MV   M+++    I VV++G +AV A     +D++LMDV MP MDGL 
Sbjct: 629 RVLIAEDDSTNQMVVMKMLQEFAAEITVVSDGTDAVQAAGEGEFDVVLMDVRMPNMDGLA 688

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR IR                       G      ++PIIA+TANA  +  + C   GM
Sbjct: 689 ATRAIR-----------------------GKGGALAKLPIIALTANAFPDDVKVCRDAGM 725

Query: 981 DSFVSKPV 988
           + F++KP+
Sbjct: 726 NDFLAKPL 733



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +   V DTGIGI  + + +LF  + Q      R++GGTGLGLAI +++VE MGG + VTS
Sbjct: 524 VEWQVTDTGIGISPDRVGSLFTDFAQADVSINRRFGGTGLGLAISRRIVEQMGGDIAVTS 583

Query: 652 KVHCGSTFTFI--LPYQVSPIEENSDD---PDDL 680
           +   GSTF F   LP+  + I ++  D    DDL
Sbjct: 584 REGEGSTFRFSLDLPWSNAWIADHRLDRLGSDDL 617


>gi|408672337|ref|YP_006872085.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
           17448]
 gi|387853961|gb|AFK02058.1| multi-sensor hybrid histidine kinase [Emticicia oligotrophica DSM
           17448]
          Length = 898

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 116/204 (56%), Gaps = 29/204 (14%)

Query: 318 GETIGVNYMGM--DVTDQVRKREKMAKLRE--EIAVQKAKETELNKTIHITEETMRAKQM 373
           GE IG  Y+G+  D T++ + +E++ K +   E+AV  AK++                  
Sbjct: 354 GEIIG--YLGVAEDYTEKKQAKEELIKAKNDAEMAVH-AKDS-----------------F 393

Query: 374 LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433
           LA MSHEIR+PL  ++   E+LS +KLD  Q + +  +  +GD +L +INDILDLSK+ES
Sbjct: 394 LANMSHEIRTPLNAIIGFTELLSQSKLDASQHEYINHIQVAGDNLLLIINDILDLSKIES 453

Query: 434 GVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           G + +E   F   + + HV   L+  AA  Q  +     +ADD+P  ++GD  RI QIL 
Sbjct: 454 GQLVIETYPFNITDTLNHVYSLLKIKAA--QNNIDFSLSLADDLPEYILGDKGRINQILV 511

Query: 491 NLISNAIKFTPEGKVGIKLYVVPE 514
           NL  NAIKFT +GKV I +  V E
Sbjct: 512 NLAGNAIKFTKDGKVTISVKKVNE 535



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 78/137 (56%), Gaps = 25/137 (18%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           ILL EDN++N ++AK+++   G S+D+ NNG EA+ A+    Y LILMD+ MP+MDG +A
Sbjct: 641 ILLCEDNQLNQILAKNVLHNFGFSVDIANNGQEAIEALAQNKYQLILMDLQMPIMDGYQA 700

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
           T  IR+  ++                          IPIIAMTA++L    ++CF  GM+
Sbjct: 701 TIYIRNVLNS-------------------------NIPIIAMTAHSLVGEQQKCFDIGMN 735

Query: 982 SFVSKPVTFQKLKECLE 998
            +++KP    +L E ++
Sbjct: 736 GYLAKPFKQHELLEKIQ 752



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 52/78 (66%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           ++ ++  V DTGIGIP+  L ++F ++ Q  A   R++GG+GLGL I KQLV L  G+L 
Sbjct: 539 SITLQFSVKDTGIGIPQEKLNSIFDRFTQAEASTTRRFGGSGLGLNIVKQLVSLQKGKLF 598

Query: 649 VTSKVHCGSTFTFILPYQ 666
           V SK+  GS F FI+ +Q
Sbjct: 599 VESKLGEGSEFYFIVTFQ 616


>gi|32481649|gb|AAP84163.1| kinase sensor protein of two component regulatory system
           [Pseudomonas aeruginosa PA14]
          Length = 931

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           EI+ +K  E EL +   + +    AK + LATMSHEIR+PL G++   E+L  T+L R+Q
Sbjct: 429 EISARKRMEAELARAKSLADAANEAKTLFLATMSHEIRTPLYGMLGTLELLGRTELSRQQ 488

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
              L  +  S   +LQLI+D+LD+SK+E+G + LE  +F P E+ + V+Q+   + Q K 
Sbjct: 489 AGYLKAIQHSSSTLLQLISDVLDVSKIEAGQLDLECVEFSPLELTEEVVQSFTGAAQAKG 548

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L L   ++ ++P+ + G    IRQIL NL+SNA+KFT  G V + L
Sbjct: 549 LQLYTCLSAELPLRMRGAAASIRQILNNLLSNAVKFTDNGYVNVHL 594



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVS-ADHARKYGGTGLGLAICKQLVELMGGRL 647
            V +   V DTG+GI     P LF  + Q+  ++H     GTGLGL+I ++L +LM G L
Sbjct: 603 CVMLTWQVNDTGMGINVEDQPRLFEPFYQIRRSEH--PVAGTGLGLSISQRLAQLMNGSL 660

Query: 648 TVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQ 686
            + S++  GS+F+  LP +   ++    +P DL+  A Q
Sbjct: 661 KLVSELGLGSSFSLRLPLERIAMQA---EPQDLAGCAVQ 696


>gi|445499437|ref|ZP_21466292.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
 gi|444789432|gb|ELX10980.1| multi-sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
          Length = 752

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 121/217 (55%), Gaps = 6/217 (2%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ Q+A    +   +   E   RAK + LA MSHEIR+P+ G++ M E++  + +D  Q
Sbjct: 206 DISEQRAARAAMQHAVESAEAASRAKSEFLANMSHEIRTPMNGILGMTELVLESDIDAHQ 265

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKI 463
           R  L ++ +S D +LQ+++DILD SK+E+G + +E   F  R++V   L+  +  + QK 
Sbjct: 266 RADLTLVKASADALLQIVDDILDFSKIEAGKLDIEEVPFDLRQLVGDTLRAMSLRARQKG 325

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLK 523
           L L  +I  DVP  + GD  R+RQ+L NL+ NAIKFT  G V ++L +  E     +G  
Sbjct: 326 LALASEIPPDVPRIMKGDPGRLRQVLLNLVGNAIKFTDAGSVTVQLSIGAE----HDGRS 381

Query: 524 QKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHG 560
           +   A +     V EEK     +  +  +G   +++G
Sbjct: 382 EIEFAVRDTGIGVPEEKQHLIFEAFAQVDGSTTRQYG 418



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 25/159 (15%)

Query: 844  PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
            PS+ S + P    +   ++LL EDN +N  +A  ++++LGH + +V++G+  +       
Sbjct: 498  PSADSQQAPA---RGGLRVLLAEDNPVNQRLAVRLLEKLGHRVTLVDSGLAVLERAARGE 554

Query: 904  YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
            +D+ILMDV MP +DGL ATR IR  E       A + G                +PIIAM
Sbjct: 555  HDVILMDVQMPGLDGLAATRQIRQRE-------AMQGG---------------HVPIIAM 592

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            TA A++   E C   GMD +++KPV  Q+L++ L +Y P
Sbjct: 593  TARAMAGDRERCLEAGMDDYLAKPVDSQQLRDMLLRYQP 631



 Score = 82.8 bits (203), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 53/86 (61%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTGIG+PE     +F  + QV     R+YGGTGLGLAIC++LV LM GR+ V S
Sbjct: 383 IEFAVRDTGIGVPEEKQHLIFEAFAQVDGSTTRQYGGTGLGLAICRRLVILMQGRIEVHS 442

Query: 652 KVHCGSTFTFILPYQVSPIEENSDDP 677
               GS F+FI+P Q + + + +  P
Sbjct: 443 TPGQGSVFSFIVPLQHTGVAQAAPLP 468


>gi|441505192|ref|ZP_20987180.1| Signal transduction histidine kinase [Photobacterium sp. AK15]
 gi|441427047|gb|ELR64521.1| Signal transduction histidine kinase [Photobacterium sp. AK15]
          Length = 695

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 139/271 (51%), Gaps = 27/271 (9%)

Query: 244 YRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREV---LEKGLPAKREITFETEL 300
           ++F Y   P+L    I  +   +IF G       + K+E+   LEK +P +       E 
Sbjct: 221 FQFTYISSPNLANHVIDNECIFDIFDG-----HSELKKELKARLEKKVPFEDLEWQLPES 275

Query: 301 FGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKT 360
            G   F     P FSK G+  G      D+T + ++  ++ + R++              
Sbjct: 276 EGGTWFSFSGTPYFSKQGKLQGFRGTAKDITHRKKQLFELQEARKQ-------------- 321

Query: 361 IHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVL 419
               E   +AK Q LA MSHEIR+PL  V+ + E L+++ L+ EQ+  +  M  S  L+L
Sbjct: 322 ---AESANKAKSQFLAMMSHEIRTPLNAVLGLMETLADSGLNSEQKGWIDYMEQSAQLLL 378

Query: 420 QLINDILDLSKVESGVMKLEAAKFRPREVVKHVL-QTAAASLQKILMLEGDIADDVPIEV 478
            +INDILDLS++ESG  +L  A+ RP + +  V+ Q    + +K + L   I+ DVP  +
Sbjct: 379 TIINDILDLSRIESGNFELFNAEMRPADSINLVVNQLKEQARKKDISLTSYISPDVPEVM 438

Query: 479 IGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           IGD  RI Q++ NLI NAIKFT +G V + +
Sbjct: 439 IGDKNRISQVMFNLIGNAIKFTNQGYVSVNV 469



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 38/176 (21%)

Query: 827  PQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSI 886
            P  I  +   P +I Q+P          + +   KILL ED+  N +VAK M+++ GH +
Sbjct: 548  PIPIQTLAAIPTQIVQTP----------RLEKSLKILLAEDSNTNQLVAKLMLEKRGHQV 597

Query: 887  DVVNNGVEAVHAVQCQ--NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQ 944
             + NNG EA+  ++ +  ++D++LMD+ MPV+DGL+ATR +R      N+D         
Sbjct: 598  KIANNGEEAIELLKLKRNSFDIVLMDISMPVLDGLEATRQLRR----SNYD--------- 644

Query: 945  AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                         IPIIA+TANA+    EE    GMD F++KP+   +L   L++Y
Sbjct: 645  -------------IPIIALTANAMQSDQEEYKRAGMDGFLAKPIQPMELNLMLDKY 687



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 46/79 (58%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTGIGI   A   LF  ++Q      R+YGGTGLGLAI + L+  M GR+T+ S
Sbjct: 476 IVIAVKDTGIGIAPEAQKNLFNPFIQADGSITRRYGGTGLGLAISQHLINKMNGRITLQS 535

Query: 652 KVHCGSTFTFILPYQVSPI 670
           ++  GS FT  +P  +  +
Sbjct: 536 ELDKGSCFTVYIPIPIQTL 554


>gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase
           [Opitutus terrae PB90-1]
 gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase
           [Opitutus terrae PB90-1]
          Length = 758

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/173 (44%), Positives = 105/173 (60%), Gaps = 2/173 (1%)

Query: 341 AKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTK 399
           A L EEI  +   E +L +     E   RAK + LA MSHEIR+P+ GV+ MA +L  T 
Sbjct: 200 ALLHEEIGRRMLVELDLKRAKDAAEAADRAKSVFLANMSHEIRTPMNGVLGMANLLLATP 259

Query: 400 LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAA 458
           L+ EQ  L   +  SG+ +L +INDILD SK+E+G M+LEA  F   + ++  L   A A
Sbjct: 260 LNPEQHDLAETLCQSGESLLTIINDILDFSKIEAGRMELEAIDFDLADNLELALDLHAEA 319

Query: 459 SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
           + +K L L  +I   VP  V GD  R+RQIL NL+ NAIKFT +G+V +K+ V
Sbjct: 320 AARKHLELVVNIDPAVPRHVRGDPGRLRQILLNLVGNAIKFTEKGEVVVKVTV 372



 Score =  103 bits (257), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 85/151 (56%), Gaps = 18/151 (11%)

Query: 852  PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
            P   P  + +IL+ EDN +N  V    ++ LG+  DVV NG E + A++ + Y L+LMD 
Sbjct: 615  PAAPPAKEARILIAEDNPVNQKVTLLQLRNLGYPADVVPNGREVLEALRRKAYALVLMDA 674

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MP MDG++ATR IR           A+A  ++ +PS         + IIAMTANA++  
Sbjct: 675  QMPEMDGVEATRKIRE----------AQAAGDRTIPSP--------LRIIAMTANAMTGD 716

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
             E C A GMD +++KPV    L++ L +Y P
Sbjct: 717  RELCLAAGMDDYLAKPVKPGDLRDMLARYLP 747



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 51/81 (62%)

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
           ++D +    V +R  V DTGIGIPE     LF+ ++Q      R++GG+GLGL ICK+L 
Sbjct: 371 TVDHNWPNRVLLRFAVTDTGIGIPEWVQEKLFQPFVQADTSTTRRFGGSGLGLVICKRLA 430

Query: 641 ELMGGRLTVTSKVHCGSTFTF 661
           ELM G + V SK + GSTF F
Sbjct: 431 ELMSGSIGVESKPNEGSTFWF 451


>gi|398340376|ref|ZP_10525079.1| histidine kinase response regulator hybrid protein [Leptospira
           kirschneri serovar Bim str. 1051]
          Length = 804

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 151/337 (44%), Gaps = 73/337 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 386 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG 445

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G               K +L+  
Sbjct: 446 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAG---------------KVILERE 490

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK  I+ YV  +P
Sbjct: 491 VFSIRSVL-------DE-----------IHDLLFPLAKQKEIDFRLEGKSEIQEYVYGDP 532

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N   D                   
Sbjct: 533 ------LRLRQILWNLAGNGIKFTNRGEVVLKVAQKNISKD------------------- 567

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
                         V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 568 -------------GVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 614

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEE 672
            KQL+EL GG L + S+   GS FTF + Y +  I E
Sbjct: 615 TKQLIELQGGVLKLESQEGEGSKFTFTIDYDIPSILE 651



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 677  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLETFDIILMDIHMPEVDGIE 736

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N   + P IIA+TA+A+  S E+  + G
Sbjct: 737  ATKWIR------------------------SKNQNSKFPIIIALTADAIESSREKYISKG 772

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 773  MNDCLTKPLDLPILKSTLDLW 793


>gi|389783844|ref|ZP_10195094.1| two component system sensor-response regulator hybrid protein
           [Rhodanobacter spathiphylli B39]
 gi|388434276|gb|EIL91224.1| two component system sensor-response regulator hybrid protein
           [Rhodanobacter spathiphylli B39]
          Length = 1184

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 96/142 (67%), Gaps = 9/142 (6%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LAT+SHEIR+P+TGV+ MAE+L +T L+  Q      M  SG ++L+L+ND LDL+++
Sbjct: 818 QFLATLSHEIRTPMTGVMGMAELLLSTPLNPLQHDYTQAMQRSGTMLLKLLNDALDLARI 877

Query: 432 ESGVMKLEAAKFRPREVVKHVLQ-----TAAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           E+G ++LE   F PR++++ V Q       A  L+ +L    DIA  +P +++GD LRI+
Sbjct: 878 EAGRLELEPVAFDPRQLLEEVAQLEQGLAHARGLRFVL----DIAAGLPPQLLGDALRIK 933

Query: 487 QILTNLISNAIKFTPEGKVGIK 508
           Q+L NL +NA+KFT +G V ++
Sbjct: 934 QVLLNLANNALKFTEQGSVTLR 955



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 29/156 (18%)

Query: 850  EVPETKPKPKP------KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
            E P + P   P      ++LLVED+ I   V + ++++  H++  V NG+ A+  +   +
Sbjct: 1036 EPPASLPTAVPSSDRCYRLLLVEDDTIVAAVIRGLLERERHAVVHVVNGLAALAELAQSS 1095

Query: 904  YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
            +D +L+D+ +P +DG +  RLIR  E                       +  + +PIIA+
Sbjct: 1096 FDAVLLDLDLPGVDGFQIARLIRQRE-----------------------HRQQHLPIIAV 1132

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            TA + ++        GMD F+ KP+T ++L + L +
Sbjct: 1133 TARSGNKDEAMARDAGMDGFLRKPLTGEQLSQALAR 1168



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 2/73 (2%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            ++  + DTG GIPE +   LF+++ QV     R   G+GLGLAIC++LV++MGG + + S
Sbjct: 963  LQFSIVDTGPGIPEASQARLFQRFEQVEGPQRRA--GSGLGLAICRELVDMMGGSIELES 1020

Query: 652  KVHCGSTFTFILP 664
            ++  GSTF   LP
Sbjct: 1021 RLAHGSTFRVRLP 1033


>gi|334129574|ref|ZP_08503378.1| Sensor protein [Methyloversatilis universalis FAM5]
 gi|333445259|gb|EGK73201.1| Sensor protein [Methyloversatilis universalis FAM5]
          Length = 870

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 101/168 (60%), Gaps = 2/168 (1%)

Query: 350 QKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
           ++  E EL +     E   RAK   LA MSHEIR+P+ G++ M+ +L +T LD EQR+ +
Sbjct: 163 RRQAEVELLRAKEKAEAASRAKSDFLANMSHEIRTPMNGIMGMSALLQDTSLDSEQREYV 222

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLE 467
             + +S D +L +INDILD SK+E+G + +E  +  P ++V    +  A  + QK + L 
Sbjct: 223 HAIKTSADALLVIINDILDFSKIEAGKLAIEEVECVPSDLVGEAARGLAIGAQQKGVELY 282

Query: 468 GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
             IA D+P  V+GD  R+RQIL NLI NA+KFT  G++ +    V  P
Sbjct: 283 CRIAPDLPRRVLGDPGRMRQILVNLIGNAVKFTERGEIEVGCEAVGMP 330



 Score =  110 bits (274), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 14/140 (10%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +LL EDN +N +VA   +++ G+ + V NNG EA+  +  +++D++LMDV MPVM G++A
Sbjct: 592  VLLAEDNPVNQLVAVRTLERAGYKVTVANNGQEALDLIDSESFDVVLMDVQMPVMGGIEA 651

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR+ E   +W                 ++H + +PIIAMTANA+    E C   GMD
Sbjct: 652  TRAIRAREQRRSWVV--------------DTDHVQHLPIIAMTANAMKGDRELCLDEGMD 697

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             +VSKPV  + L   LE+  
Sbjct: 698  DYVSKPVKAEDLLAALERVL 717


>gi|149191397|ref|ZP_01869648.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148834746|gb|EDL51732.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 836

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 167/329 (50%), Gaps = 25/329 (7%)

Query: 193 MEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFP 252
            +KL +S T L +Q+    EL    +R    L  V+++    +   DK+ R  ++   F 
Sbjct: 302 FQKLEQSRTQLAQQA----ELLMNKEREATRLANVVKHTRDAVLITDKQGRIEWVNQAFE 357

Query: 253 SL---HEEDILGKTDVEIFSGAGVKESQDFK-REVLEKGLPAKREITFETELFGSKTFLI 308
           S+   H+++I+G     +  G G  E    K R+ +++  P + EI   +    +    I
Sbjct: 358 SMTGFHKDEIIGIKPGTLLQGKGSNEKAIEKLRKAVKEQQPTRVEILNFSRTKQAYWVDI 417

Query: 309 YVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETM 368
            + PVF  +GE      +  D+T   + + K+     E AV  A    + KT        
Sbjct: 418 EISPVFGANGELDKFIAVERDITATKKLQRKL-----ENAVVAADSANIAKT-------- 464

Query: 369 RAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
              Q LATMSHEIR+P+ GV+ M +++ +   D++Q++ L +++ SG+ ++ ++NDILDL
Sbjct: 465 ---QFLATMSHEIRTPMNGVLGMVQVMLSEAKDKQQKENLSLILESGNHLISILNDILDL 521

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQ 487
           +KVE   ++LE+  F   +++  +  T  A  Q K + L  +   D  +  +GD  R+RQ
Sbjct: 522 TKVEQNKIELESCPFNIEQIIAPLRSTYQAVCQEKGIELNIECHIDANMTFLGDRNRVRQ 581

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
           ++ NL++NAIKFT  G V + +   P  P
Sbjct: 582 VMYNLLNNAIKFTERGGVTVVITNNPTTP 610



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 46/70 (65%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V D+GIGI  +AL  +F  ++Q  A   R+YGGTGLGLAI KQLVE MGG +  TS
Sbjct: 613 LRFSVQDSGIGIETSALERIFEPFVQADASTTREYGGTGLGLAIVKQLVEKMGGTIDATS 672

Query: 652 KVHCGSTFTF 661
           +   G+ F F
Sbjct: 673 EQGQGTRFEF 682



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           IL+VEDN++N +VA  ++   GH+ + V NG  A+ A+  Q+YDL+LMD  MPVMDG++A
Sbjct: 712 ILIVEDNRVNAIVACKLLGLEGHTTNTVTNGALALEALNEQHYDLVLMDNHMPVMDGVEA 771

Query: 922 TRLIRSFEDTG----NWDAAAEAGIEQAMPSSGS 951
              IR    +G     W A   A  +QA   +G+
Sbjct: 772 CTRIREQFGSGLLIFGWTADVFADSKQAFIDAGA 805


>gi|425898868|ref|ZP_18875459.1| putative sensor histidine kinase/response regulator RcsC
           [Pseudomonas chlororaphis subsp. aureofaciens 30-84]
 gi|397892375|gb|EJL08853.1| putative sensor histidine kinase/response regulator RcsC
           [Pseudomonas chlororaphis subsp. aureofaciens 30-84]
          Length = 1076

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 108/166 (65%), Gaps = 2/166 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+  K  E  L +     + +  AK + LATMSHEIR+PL GV+   E+L+ + L+  Q
Sbjct: 469 DISAYKLAERALAQAKQSADASNEAKTVFLATMSHEIRTPLYGVLGTLELLTLSPLNALQ 528

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKI 463
           R  +  M  S  ++LQ+I+DILD+SK+E+G + +E  +F P E+++ VLQ+ +AA+  K 
Sbjct: 529 RSQVQTMQRSSSILLQVISDILDVSKIEAGQLAIEHVEFTPLEMIEDVLQSYSAAAGAKG 588

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L L   +  ++P +V GD  RIRQIL NL+SNAIKFT  G++ +++
Sbjct: 589 LHLYACVEVELPRKVRGDAARIRQILNNLLSNAIKFTDVGRIALRV 634



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 26/153 (16%)

Query: 845 SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
           ++ SAE  ++  +    +L+ EDN IN  + K  ++QLG S+ + +NGVEA+       +
Sbjct: 836 ANESAEAIQSWCRFSLHVLVAEDNPINQTLIKEQLQQLGCSVALASNGVEALRLWDHDAF 895

Query: 905 DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
           D++L DV MP M+G + T  +R                         SN     PI+ +T
Sbjct: 896 DVVLTDVNMPEMNGYELTTALRR----------------------ADSN----TPIVGVT 929

Query: 965 ANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
           ANAL E  E C   GM++ V KP++ Q L   L
Sbjct: 930 ANALREEEERCIGVGMNACVVKPMSLQTLHNVL 962


>gi|422638059|ref|ZP_16701491.1| PAS protein [Pseudomonas syringae Cit 7]
 gi|330950455|gb|EGH50715.1| PAS protein [Pseudomonas syringae Cit 7]
          Length = 1350

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 141/292 (48%), Gaps = 52/292 (17%)

Query: 246 FIYNHFPSLHEEDILGKTDVEIFSGAG----------VKESQDFKREVLEKGLPAKR--E 293
           F++N    L    +LG ++ E+ SG G             S +  RE    G P +    
Sbjct: 512 FVFNRGAEL----LLGYSNAEMVSGNGPGVFHLPEEVAARSAELSREY---GTPIEGIDV 564

Query: 294 ITFETELFGSKT--------------FLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREK 339
             ++  L GS+T               L+ + P+ +  GE IG   +  D+T+++     
Sbjct: 565 FCYKASLEGSETRQWTYVRKDGTTVPVLMIITPIRTADGELIGHLGIAQDITERLHH--- 621

Query: 340 MAKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNT 398
                           EL+      E    AK + LA MSHEIR+P+  V+ ++ +L NT
Sbjct: 622 --------------SAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNT 667

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
            L+ +QRQLL  +  +G  +L +INDILD++K+E+G M+LE   F PR+++  + +    
Sbjct: 668 ALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTP 727

Query: 459 SLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             Q K L     +   +P ++IGD LR+ QIL NL+ NA+KFT  G V + +
Sbjct: 728 QAQEKGLRFSVSVVASLPGQLIGDALRVNQILMNLVGNALKFTTVGGVDVTV 779



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 55/88 (62%)

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
           S ++D   T W+R  V DTG GIP NAL  LF  + Q  A   R++GGTGLGL++ + L 
Sbjct: 780 SREDDHADTCWLRFSVQDTGCGIPANALGQLFAPFTQADASTTRRFGGTGLGLSVVRGLA 839

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           E MGGR+ V S++  GS F   LP+Q S
Sbjct: 840 EQMGGRIGVESELGTGSEFWVELPFQSS 867



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 26/126 (20%)

Query: 865  VEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN--YDLILMDVCMPVMDGLKAT 922
            V+D++IN+ VA  +++Q G  +   +NG+ A+  ++     +D +LMDV MP MDG +AT
Sbjct: 1025 VDDSEINLEVASLLLQQQGAVVQTCSNGLLALERLRQTPDVFDAVLMDVQMPEMDGYEAT 1084

Query: 923  RLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDS 982
            R +R+           E G+              R+P++A+TA AL+E   +    GMD 
Sbjct: 1085 RRLRN-----------ELGL-------------TRLPVLALTAGALAEERRQAELAGMDD 1120

Query: 983  FVSKPV 988
            F++KP+
Sbjct: 1121 FLTKPL 1126


>gi|260221812|emb|CBA30748.1| hypothetical protein Csp_C25110 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 486

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 97/164 (59%), Gaps = 2/164 (1%)

Query: 353 KETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVM 411
           +  EL   +   E    AK + LA MSHEIR+P+ G + + E+L +T L+ EQ   +  +
Sbjct: 93  RTAELQAALVQAESANVAKSRFLAMMSHEIRTPMNGALGLTELLKSTPLNNEQAGYVDNI 152

Query: 412 ISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDI 470
           + +G+ +L LINDILD SK+E+  M+LE   F PR+VV+  L       Q K L+L  D+
Sbjct: 153 LMAGNALLSLINDILDFSKIEAHQMELERIPFNPRQVVQDTLALFRTQAQAKGLVLHLDM 212

Query: 471 ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
            D VP    GD  R+RQ+  NL+ NA+KFT EG+V I L   PE
Sbjct: 213 DDHVPDHATGDPNRLRQVWMNLVGNALKFTSEGEVRIALLCTPE 256



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 27/141 (19%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDV-VNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
           +ILLV+D  +N ++A++ +KQLG        NG+ A+  ++   +D++LMD+ MP MDG+
Sbjct: 364 RILLVDDQPLNRLLARNQLKQLGCPPHKEAENGLLALERLREAEFDVVLMDMQMPEMDGI 423

Query: 920 KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFAN 978
            A + +R                  AMP         R P +IAMTANA +E    C   
Sbjct: 424 TAAKALR------------------AMP-------LTRQPLVIAMTANAYAEDRIACMEA 458

Query: 979 GMDSFVSKPVTFQKLKECLEQ 999
           GMD F+SKPV    L++ L Q
Sbjct: 459 GMDLFLSKPVQLDTLRQALNQ 479



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 44/72 (61%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +RC V DTGIG+    +  LF  + Q  +  +RK+GGTGLGL ICK L++ MG  L V S
Sbjct: 258 LRCSVKDTGIGMSAEVMSQLFEPFKQGDSSISRKFGGTGLGLVICKALIDQMGADLQVQS 317

Query: 652 KVHCGSTFTFIL 663
               G+ F+F L
Sbjct: 318 TPGVGTEFSFTL 329


>gi|94264437|ref|ZP_01288226.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455127|gb|EAT05349.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 115/185 (62%), Gaps = 17/185 (9%)

Query: 328 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTG 387
           M++ +  R+ E+ A   EE+A ++A+   + K+           + LA MSHEIR+P+ G
Sbjct: 136 MELRESNRRLEEAAVQAEELA-REAQAANIAKS-----------EFLANMSHEIRTPMNG 183

Query: 388 VVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447
           V+ MA +L +  L  EQ   + V+I+SG+ +L+LIN ILD SK+E+G ++L+   F PRE
Sbjct: 184 VIGMASLLLSEDLTAEQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRE 243

Query: 448 VVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK 504
           +V+ V   LQ  AA+  + L L  +I+  +P  V GD +R+RQ+L NL+ NAIKFT  G 
Sbjct: 244 LVQEVVLLLQPQAAA--QNLALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGG 301

Query: 505 VGIKL 509
           V I+L
Sbjct: 302 VAIEL 306



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 51/70 (72%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGIP   +  LF+++ Q+     RKYGGTGLGLAIC++LVELMGG + V S+V  
Sbjct: 324 VKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVESEVGK 383

Query: 656 GSTFTFILPY 665
           GSTF F +P+
Sbjct: 384 GSTFWFTVPF 393


>gi|381160270|ref|ZP_09869502.1| PAS domain S-box [Thiorhodovibrio sp. 970]
 gi|380878334|gb|EIC20426.1| PAS domain S-box [Thiorhodovibrio sp. 970]
          Length = 707

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 137/262 (52%), Gaps = 24/262 (9%)

Query: 259 ILGKTDVEIFSGAGVKESQDFKR----EVLEKGLPAKREITFETELF---GS-KTFLIYV 310
           ++GKTD EIF  +   ES+  +     E   + LPA   I  E  +    GS + +L   
Sbjct: 64  LIGKTDAEIFDVS--PESEPVRTYMADERAAQRLPAGEVIAREEPVIAHDGSLRFYLTKK 121

Query: 311 EPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQ-KAKETELNKTIHITEETMR 369
            P+F   G  +G   + +D+T+           R E+  Q +   T L + +   +  ++
Sbjct: 122 HPIFDAQGTLLGTGNISVDITE-----------RHELEDQLRVSNTALTEAVTQAKAAVQ 170

Query: 370 AKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
            K   LA MSHEIR+P+ G++ +AE+     LD   RQ L  +  SG+ +L ++ND+LD 
Sbjct: 171 VKSAFLARMSHEIRTPMNGILGLAELALRRSLDATTRQYLQELHQSGEQLLGILNDVLDQ 230

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQ 487
           SK+ESG + LEA  F    + ++     A   Q K L L  +    VP  ++GD LR+RQ
Sbjct: 231 SKIESGQLSLEAVPFDREALFENERSLFAPMAQNKGLRLVSECDPAVPRWLLGDALRLRQ 290

Query: 488 ILTNLISNAIKFTPEGKVGIKL 509
           +L+NL+SNAIKFT  G++ + L
Sbjct: 291 VLSNLLSNAIKFTEHGEISLCL 312



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 24/142 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ ED  IN  +   M++ LG  + +  NG EA+  +   ++DL+LMD+ MP MDGL 
Sbjct: 425  RILVAEDQPINQHIITDMLRLLGTEVTLAQNGREALEQLAKDDFDLVLMDIQMPEMDGLT 484

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT  +R+                        +  + ++P++A+TA   +   E   + G+
Sbjct: 485  ATEQLRT------------------------NPVWAKLPVVALTAGVTTAERERTRSAGL 520

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
               ++KPV  ++L+  L ++ P
Sbjct: 521  SDLLAKPVRLKELQSMLSRWLP 542



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 45/72 (62%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V +R  V DTGIG+  +    LF+ + Q     AR++GGTGLGL+I + LVE MGGRL V
Sbjct: 322 VRLRWSVSDTGIGMDSDTQARLFQPFTQGDDSIARRFGGTGLGLSISRHLVERMGGRLDV 381

Query: 650 TSKVHCGSTFTF 661
            S    GS F+F
Sbjct: 382 ESAPGVGSRFSF 393


>gi|342890260|gb|EGU89108.1| hypothetical protein FOXB_00381 [Fusarium oxysporum Fo5176]
          Length = 1369

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 115/191 (60%), Gaps = 17/191 (8%)

Query: 322 GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETE-LNKTIHITEETMRAK-QMLATMSH 379
           GV  + MDVT+         ++REE   +++KE           +E  R K Q LA MSH
Sbjct: 755 GVIGVIMDVTE--------LRVREEALEKQSKEKRRAMANEAAAKEANRLKSQFLANMSH 806

Query: 380 EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
           EIR+P+TGV+ MAE+LS  +LD EQ++ +  + SS   +L +INDILD SKVESG + +E
Sbjct: 807 EIRTPITGVLGMAELLSGMQLDAEQQEYVENIQSSATSLLTVINDILDFSKVESGRLDIE 866

Query: 440 AAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVP--IEVIGDVLRIRQILTNLIS 494
             +F    +VK V   LQ A    +K L  + DI D +   + VIGD  R+RQILTNL++
Sbjct: 867 EVQFSLSHIVKEVGRMLQFAVE--RKNLDFQSDIGDGIENDLVVIGDPGRVRQILTNLLT 924

Query: 495 NAIKFTPEGKV 505
           N+IKFT +G V
Sbjct: 925 NSIKFTNQGYV 935



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 50/74 (67%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  V D+GIGI ++    LF+ + Q  A  AR++GGTGLGL ICK L++LM GR+++ S
Sbjct: 951  VRFTVEDSGIGIQDDVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLES 1010

Query: 652  KVHCGSTFTFILPY 665
             V  G+  TF +P+
Sbjct: 1011 NVGVGTRATFWIPF 1024



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 83/166 (50%), Gaps = 29/166 (17%)

Query: 843  SPSSSSAEVPETKPKPKPKILLVEDNK--INVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            S SS   E+P ++ + K  +L+VEDN   IN  +A   + +LG  +    NG EA+  + 
Sbjct: 1087 STSSPDQELPASE-RAKIHVLVVEDNPSPINQKIATKTIGKLGFQVTAAWNGKEALEYLA 1145

Query: 901  C------QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
                   Q  D+ILMDV MP++DG K T L+R                   MP       
Sbjct: 1146 SVQKGIKQKPDIILMDVQMPIIDGYKCTHLLR-----------------HHMPYK---PL 1185

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             + +PI+AMTA+A+    E+C   GMD +++KPV    L++ L ++
Sbjct: 1186 VQDVPIVAMTASAIQGDREKCTKAGMDDYLAKPVRGVILEKMLLRW 1231


>gi|427430359|ref|ZP_18920213.1| hypothetical protein C882_1376 [Caenispirillum salinarum AK4]
 gi|425878819|gb|EKV27530.1| hypothetical protein C882_1376 [Caenispirillum salinarum AK4]
          Length = 1659

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 113/204 (55%), Gaps = 3/204 (1%)

Query: 314  FSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-Q 372
            + +SG  + V Y    + D       +   R+ I+ +K  ETEL +   + E   RAK +
Sbjct: 955  WHRSGTPLDVAYAAAPIMDDGAVSGAVIAFRD-ISARKQAETELREAKDLAEAGARAKSR 1013

Query: 373  MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
             LAT+SHEIR+P+ GV+ M  +L +T LD +QR+    +  S D +L L+ND+LD SK+E
Sbjct: 1014 FLATISHEIRTPMNGVIGMTGLLLDTDLDSQQRRFAMTIRDSADALLALLNDVLDFSKME 1073

Query: 433  SGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
            +G ++LE + F    +V+ V+   A  +L K + +   +   V    +GD  R+RQ+L N
Sbjct: 1074 AGRLELEVSPFALGPLVEGVVDILAPRALDKAVDVHAHVDPAVAGTYLGDAGRLRQVLLN 1133

Query: 492  LISNAIKFTPEGKVGIKLYVVPEP 515
            L+ NA+KFT  G + I +     P
Sbjct: 1134 LVGNAVKFTDTGAITISVESAAAP 1157



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 23/139 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN +N  VA+ M+++LGH +D+  +GVEAV AV+   YDL++MD+ MP MDGL+
Sbjct: 1400 RILVAEDNPVNQQVAQRMLERLGHHVDLAADGVEAVDAVRVLPYDLVVMDMQMPEMDGLE 1459

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT  IR+                              +PI+AMTANAL    + C   GM
Sbjct: 1460 ATHRIRAM-----------------------GPPLDTMPIVAMTANALPSDRQVCLDAGM 1496

Query: 981  DSFVSKPVTFQKLKECLEQ 999
              +++KPV    L   +++
Sbjct: 1497 TDYIAKPVDLDGLAMVIDR 1515



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 583  DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
            DED+     +R  + DTG GI  + LPTLF+++ Q   D AR+ GGTGLGLAI + L E 
Sbjct: 1159 DEDV-----VRFIIADTGCGIAADVLPTLFQEFNQGDGDAARRAGGTGLGLAISRHLAEA 1213

Query: 643  MGGRLTVTSKVHCGSTFTFILP 664
            MGG +   S +  GSTFT  LP
Sbjct: 1214 MGGVIEAESTLGAGSTFTVTLP 1235


>gi|406836202|ref|ZP_11095796.1| sensor protein [Schlesneria paludicola DSM 18645]
          Length = 1992

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 177/408 (43%), Gaps = 64/408 (15%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            + DTGIGI E     +F  + Q      R++GGTGLGL+I  +LVELMGG++ V S++  
Sbjct: 1632 IRDTGIGISEEQKDRIFASFSQADNSITRRFGGTGLGLSISSELVELMGGKIWVESELGH 1691

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTS 715
            GSTF F     + P+E  + +   +        + DD         P +   L     T 
Sbjct: 1692 GSTFHFTARLTL-PVEAAASEKSRIVFPPVPVLIVDD--------HPTSRSVL---TDTL 1739

Query: 716  RSKKLLPNSIGFA-SAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEPESS 774
                L P ++  A +A+ +  ++  S +           P +D  ++AE  +   +P+  
Sbjct: 1740 EQMGLQPQAVHNAETAYLMMRYAVMSQTPTQLVLIDAMMPGQDGWALAE--QIRRDPD-- 1795

Query: 775  FSHSP----EPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKI 830
             S  P     P +     +  +     T +F  PA  S   ++A +E +  S  N+    
Sbjct: 1796 LSGCPILMLVPASHVYTEQQNEALRSNTWYFTKPAKVS-ELADAIQEALSVSSGND---- 1850

Query: 831  CEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVN 890
                            S  E   T  +P  +ILLV+D  +N  VA  +++  GH +    
Sbjct: 1851 ---------------GSLREEAVTTQQPM-RILLVDDAPVNREVATGLLEMFGHHVQTAT 1894

Query: 891  NGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950
            NG EAV  ++ Q +D++LMD+ MP MDG+ A   IR  E + +                 
Sbjct: 1895 NGREAVELLESQAFDVVLMDLEMPEMDGMSAAIEIRKREQSKSVST-------------- 1940

Query: 951  SSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
                    PI AMTA+A ++  + C   GMD +++KP+   +L   LE
Sbjct: 1941 --------PIFAMTAHATNDIRDRCLEAGMDGYLTKPIQPDELMATLE 1980



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 100/162 (61%), Gaps = 2/162 (1%)

Query: 351  KAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
            +  E +L +     E   +AK Q LATMSHEIR+P+ G++ M ++   T+   +Q   L 
Sbjct: 1456 RRTEEKLREAKEAAENASQAKSQFLATMSHEIRTPMNGIIGMTDLTLMTRPTAQQTSYLR 1515

Query: 410  VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEG 468
            V+  S D +++L+NDILD SK+E+G ++LE+  F  RE V   ++  +  S Q  L L  
Sbjct: 1516 VVKQSADSLMRLLNDILDFSKIEAGRLELESIPFDLRETVSDAVRILSVKSAQTGLELNY 1575

Query: 469  DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
             IA DVP+ V GD  R+RQIL NL+ NAIKFT EG+V + ++
Sbjct: 1576 QIAPDVPLLVGGDAGRLRQILVNLVGNAIKFTAEGEVFVDVW 1617


>gi|346320308|gb|EGX89909.1| autoinducer 2 sensor kinase/phosphatase luxQ [Cordyceps militaris
           CM01]
          Length = 1379

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/137 (46%), Positives = 94/137 (68%), Gaps = 3/137 (2%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LA MSHEIR+P+TGV+ MAE+L +  LD EQR  +  + SS   +L +INDILD SKV
Sbjct: 801 QFLANMSHEIRTPITGVLGMAELLGDMSLDEEQRDYVDNIQSSATSLLTVINDILDFSKV 860

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVP--IEVIGDVLRIRQI 488
           ESG + +E  +F    ++K V++    +++ K L  + +I+DD+   + VIGD  R+RQI
Sbjct: 861 ESGRLDIEEVQFSLSIILKEVVRMLKFAVERKNLDFQSNISDDIENDLAVIGDPGRVRQI 920

Query: 489 LTNLISNAIKFTPEGKV 505
           +TNL++N+IKFT +G V
Sbjct: 921 ITNLLTNSIKFTSQGYV 937



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 26/145 (17%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV------QCQNYDLILMDVCMPV 915
            IL+VEDN +N  +A   +++LG  +    NG EA+  V      +    D+ILMDV MP+
Sbjct: 1105 ILVVEDNAVNQKIATRTIRKLGFQVTATWNGREALEYVLGASEGRNAKPDIILMDVQMPI 1164

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            +DG K T L+R                    P  G       +PI+AMTA+A+    E+C
Sbjct: 1165 IDGYKCTHLMRHHR-----------------PYKG---LIHDVPIVAMTASAIQGDREKC 1204

Query: 976  FANGMDSFVSKPVTFQKLKECLEQY 1000
               GMD +++KPVT   L+  L ++
Sbjct: 1205 KKAGMDDYLAKPVTMSILERMLIRW 1229



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 53/78 (67%)

Query: 589  TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            ++ I+  + DTGIGI ++    LF+ + Q  A  AR++GGTGLGL ICK L++LM G++T
Sbjct: 950  SIIIKFIIEDTGIGIQDDVRQKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGQIT 1009

Query: 649  VTSKVHCGSTFTFILPYQ 666
            + S V  G+T TF +P+ 
Sbjct: 1010 LQSTVGSGTTATFWIPFH 1027


>gi|440745788|ref|ZP_20925077.1| PAS protein [Pseudomonas syringae BRIP39023]
 gi|440372051|gb|ELQ08865.1| PAS protein [Pseudomonas syringae BRIP39023]
          Length = 1350

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 141/292 (48%), Gaps = 52/292 (17%)

Query: 246 FIYNHFPSLHEEDILGKTDVEIFSGAG----------VKESQDFKREVLEKGLPAKR--E 293
           F++N    L    +LG ++ E+ SG G             S +  RE    G P +    
Sbjct: 512 FVFNRGAEL----LLGYSNAEMVSGNGPGVFHLPEEVAARSAELSREY---GTPIEGIDV 564

Query: 294 ITFETELFGSKT--------------FLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREK 339
             ++  L GS+T               L+ + P+ +  GE IG   +  D+T+++     
Sbjct: 565 FCYKASLEGSETRQWTYVRKDGTTVPVLMIITPIRTADGELIGHLGIAQDITERLHH--- 621

Query: 340 MAKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNT 398
                           EL+      E    AK + LA MSHEIR+P+  V+ ++ +L NT
Sbjct: 622 --------------SAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNT 667

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
            L+ +QRQLL  +  +G  +L +INDILD++K+E+G M+LE   F PR+++  + +    
Sbjct: 668 ALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTP 727

Query: 459 SLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             Q K L     +   +P ++IGD LR+ QIL NL+ NA+KFT  G V + +
Sbjct: 728 QAQEKGLRFSVSVVASLPGQLIGDALRVNQILMNLVGNALKFTTVGGVDVTV 779



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 54/88 (61%)

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
           S ++D   T W+R  V DTG GIP N L  LF  + Q  A   R++GGTGLGL++ + L 
Sbjct: 780 SREDDHADTCWLRFSVQDTGCGIPANVLGQLFAPFTQADASTTRRFGGTGLGLSVVRGLA 839

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           E MGGR+ V S++  GS F   LP+Q S
Sbjct: 840 EQMGGRIGVESELGTGSEFWVELPFQSS 867



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 26/126 (20%)

Query: 865  VEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN--YDLILMDVCMPVMDGLKAT 922
            V+D++IN+ VA  +++Q G  +   +NG+ A+  ++     +D +LMDV MP MDG +AT
Sbjct: 1025 VDDSEINLEVASLLLQQQGAVVQTCSNGLLALERLRQTPDVFDAVLMDVQMPEMDGYEAT 1084

Query: 923  RLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDS 982
            R +R+           E G+              R+P++A+TA AL+E   +    GMD 
Sbjct: 1085 RRLRN-----------ELGL-------------TRLPVLALTAGALAEERRQAELAGMDD 1120

Query: 983  FVSKPV 988
            F++KP+
Sbjct: 1121 FLTKPL 1126


>gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 1407

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 104/168 (61%), Gaps = 3/168 (1%)

Query: 352  AKETELNKTIHITEETM-RAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLG 409
            A+++ L +   +  ET  +AK + LATMSHEIR+PL GV+ M  +L +T L  EQR+   
Sbjct: 874  AQQSVLEQQARLEAETANKAKSVFLATMSHEIRTPLNGVIGMTALLEDTPLSEEQREYAH 933

Query: 410  VMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEG 468
             + S G+ +L +INDILD SK+ESG M+LE      R  ++ VL   A  + Q  L L  
Sbjct: 934  TIRSCGESLLGVINDILDFSKIESGKMELEQQPIELRSCLEEVLDMFAGKAGQTGLDLIY 993

Query: 469  DIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
             I   VP +++GD LR+RQIL NL+ NA+KFT +G+V + + +V   P
Sbjct: 994  QIDPLVPPQILGDSLRLRQILINLVGNAVKFTHQGEVMVGVQLVAVRP 1041



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 87/156 (55%), Gaps = 29/156 (18%)

Query: 845  SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
            S S+ +V   +  P  +IL+ EDN INV +   ++ +LG+S  V NNG E +  +  + +
Sbjct: 1268 SKSAYKVDFARQYPL-QILIAEDNPINVKLLVRVLNKLGYSPTVANNGQEVLSRLH-EGF 1325

Query: 905  DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAM 963
            DLILMD+ MP MDGL+ATRLIR                +QA+          R P IIA+
Sbjct: 1326 DLILMDIQMPEMDGLEATRLIR----------------QQAI----------RQPWIIAL 1359

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            TA+A+ E  E C A GM+ ++SKP    +L + L+Q
Sbjct: 1360 TADAMLEDRELCLAVGMNDYMSKPPVLSQLTKALQQ 1395



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 50/73 (68%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGIP + +  LF+ + QV + H+R+YGGTGLGL I ++L+ELMGG + V S+V  
Sbjct: 1051 VRDTGIGIPGSKIGQLFKAFSQVDSSHSRQYGGTGLGLIISQRLIELMGGVIRVESEVGK 1110

Query: 656  GSTFTFILPYQVS 668
            G+ F F L  Q  
Sbjct: 1111 GTAFRFTLVCQTG 1123


>gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 1038

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 100/163 (61%), Gaps = 4/163 (2%)

Query: 355 TELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
           +EL    H  E   +AK Q LA MSHEIR+P+  V+ M  +L NT L+ +Q+  +  + S
Sbjct: 274 SELQAAKHEAEAANQAKSQFLANMSHEIRTPMNAVIGMTGLLLNTPLEAQQQDFVETIRS 333

Query: 414 SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIAD 472
           SGD +L LINDILD SK+E+G + LE   F  R  ++  L   A+ + +K L L   I  
Sbjct: 334 SGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASKASEKNLELAYLINP 393

Query: 473 DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
             P  ++GD+ R+RQ+L NL++NA+KFT EG+V +  YV  +P
Sbjct: 394 PTPTAILGDITRLRQVLVNLLNNALKFTGEGEVVV--YVSSKP 434



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 30/182 (16%)

Query: 825 NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP-------KILLVEDNKINVMVAKS 877
           N+P +  ++Q    ++  +P     + P+ +  P         +ILL ED  +N  VA  
Sbjct: 652 NKPVQQAQLQSVLAQVLGNPLIKVEQAPDVQENPTNLGDQHPLRILLAEDMVVNQKVALL 711

Query: 878 MMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937
            +KQLG+  DV NNG+E + A++ Q YD++LMDV MP MDGL ATR     E    W   
Sbjct: 712 TLKQLGYRADVANNGLEVIEALERQAYDVVLMDVQMPEMDGLTATR-----EVCQRWSPE 766

Query: 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
                              R  IIAMTANA+    E C   GMD++++KPV   +L++ L
Sbjct: 767 ------------------DRPHIIAMTANAMQGDREMCLDAGMDAYITKPVRIHELRDVL 808

Query: 998 EQ 999
            +
Sbjct: 809 SR 810



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 62/89 (69%), Gaps = 6/89 (6%)

Query: 587 EATVW-IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
           EAT + I+ DV DTGIGIP + L  LF+ + QV A   RK+GGTGLGLAI KQL ELMGG
Sbjct: 451 EATPYEIQFDVKDTGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLAISKQLSELMGG 510

Query: 646 RLTVTSKVHCGSTFTFI-----LPYQVSP 669
           ++ V+S+V  GSTF+F      +P  VSP
Sbjct: 511 KIWVSSEVSVGSTFSFTITASEIPNYVSP 539


>gi|418685436|ref|ZP_13246612.1| GHKL domain protein [Leptospira kirschneri serovar Grippotyphosa
           str. Moskva]
 gi|410740044|gb|EKQ84766.1| GHKL domain protein [Leptospira kirschneri serovar Grippotyphosa
           str. Moskva]
          Length = 541

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 149/332 (44%), Gaps = 73/332 (21%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L  TKL+
Sbjct: 128 LKKEIQQRRETEWELIQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGTTKLN 187

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQ++ + V+  S   +LQ+INDILD SK+E+G               K +L+    S++
Sbjct: 188 DEQKEYVEVLSVSAKSLLQIINDILDFSKIEAG---------------KVILEREVFSIR 232

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEPPFAKE 520
            +L       D+           I  +L  L     I F  EGK  I+ YV  +P     
Sbjct: 233 SVL-------DE-----------IHDLLFPLAKQKEIDFRLEGKSEIQEYVYGDP----- 269

Query: 521 GLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGN 580
            L+ +   +  A + +K           + +N   D                        
Sbjct: 270 -LRLRQILWNLAGNGIKFTNRGEVVLKVAQKNISKD------------------------ 304

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
                    V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I KQL+
Sbjct: 305 --------GVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSITKQLI 356

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQVSPIEE 672
           EL GG L + S+   GS FTF + Y +  I E
Sbjct: 357 ELQGGVLKLESQEGEGSKFTFTIDYDIPSILE 388



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 414  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLETFDIILMDIHMPEVDGIE 473

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N   + P IIA+TA+A+  S E+  + G
Sbjct: 474  ATKWIR------------------------SKNQNSKFPIIIALTADAIESSREKYISKG 509

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 510  MNDCLTKPLDLPILKSTLDLW 530


>gi|388854390|emb|CCF51974.1| related to histidine kinase [Ustilago hordei]
          Length = 1559

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 135/271 (49%), Gaps = 23/271 (8%)

Query: 247  IYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTF 306
            +  H    ++  ++G++  E++   G+       RE + + L  +  +  E E+ G + F
Sbjct: 804  VSGHGKRSNQRTMIGRSIYEVWDSPGI-------REAISRALNGE-SVVQEMEIEG-RWF 854

Query: 307  LIYVEPVFSKS-------GETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNK 359
                 P   +S       G  IGV    MD+TD+ R   K+ +   E +   A ET   +
Sbjct: 855  RTQYTPQREESYEHDANEGPIIGVVGASMDITDRRRAELKLEESMHERSRALAAETAAKE 914

Query: 360  TIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVL 419
               I  E       LA MSHEIR+P+ GV+ ++E+L +T L +EQR     +  S D +L
Sbjct: 915  ASRIKSE------FLANMSHEIRTPIAGVIGLSELLCDTPLSKEQRDFAENIQRSADALL 968

Query: 420  QLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEV 478
             +INDILD  K+E G M LE A F    V+    +    A+ +K L    +   +   ++
Sbjct: 969  TVINDILDFEKLELGKMDLEKAAFNLNVVIMDTQKMLTFATQKKGLEFRNECQLNYTGQI 1028

Query: 479  IGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             GD  R+RQ+LTNL++NAIKFT  G + +++
Sbjct: 1029 TGDAGRLRQVLTNLLTNAIKFTAVGSITLRV 1059



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 22/153 (14%)

Query: 849  AEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLIL 908
            +E P  +P+    IL+ EDN IN  +A   +K++G S  V  +G+EA+  V    YDLIL
Sbjct: 1178 SENPLQRPRKDIWILVAEDNLINAQIALKTLKKMGFSCKVAKDGLEAIEEVGKHPYDLIL 1237

Query: 909  MDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANAL 968
            MD  MP  DG +AT+ +R                        +S   +  PIIAMTA+A+
Sbjct: 1238 MDCHMPNCDGYEATKRLR----------------------KSNSVDVRTTPIIAMTASAI 1275

Query: 969  SESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                E+C A GM  ++SKPV    L+  L ++ 
Sbjct: 1276 RGDREKCLAAGMSDYLSKPVKSVALETTLVKWL 1308



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 51/80 (63%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            E ++ +  +V DTG GI +  L  LF+ + Q     AR++GGTGLGL+ICK LV+LMGG 
Sbjct: 1066 EKSLHVHFEVRDTGCGISQMTLKKLFQPFSQADPSFARRFGGTGLGLSICKNLVDLMGGT 1125

Query: 647  LTVTSKVHCGSTFTFILPYQ 666
            + + S  + GS   F +P++
Sbjct: 1126 IGLESVENKGSNAWFSIPFE 1145


>gi|163792880|ref|ZP_02186856.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181526|gb|EDP66038.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 743

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 108/177 (61%), Gaps = 4/177 (2%)

Query: 336 KREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEI 394
           +R+++  +   +AV K    E+       E   RAK + LA MSHEIR+P+ GV+ M  +
Sbjct: 206 RRDEVGAMAAALAVFKDAMAEVRDAKERAEAATRAKSEFLAMMSHEIRTPMNGVIGMTRL 265

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH--V 452
           L +  L    R+  GV++ SG+ ++ ++NDILDLSK+E+G ++LE   F  R +V+    
Sbjct: 266 LLDGDLAARDRETAGVVLESGEALMTILNDILDLSKLEAGRLELEVIDFDVRRLVEGTVT 325

Query: 453 LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L +  AS +K L L+  +ADD+P  + GD  R+RQ++ NL+ NA+KFT  G V +++
Sbjct: 326 LMSGRAS-EKGLALQARVADDMPQYLRGDAGRLRQVVLNLVGNAVKFTDAGSVTVRV 381



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 2/92 (2%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           + TV +  +V DTGIG+ E A   LF+++ Q  A  AR+YGGTGLGL+I K++V+ MGG 
Sbjct: 388 QTTVPLVLEVIDTGIGMDETARSRLFQEFAQADASIARRYGGTGLGLSISKRVVDRMGGA 447

Query: 647 LTVTSKVHCGSTFTFIL--PYQVSPIEENSDD 676
           + V S    GSTF   L  P  V+P  ++ D+
Sbjct: 448 IEVDSASGRGSTFRVHLSIPEGVAPTADSDDE 479



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 23/140 (16%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +L+ EDN +N  VA+ ++++ GH + VV +G +AV AV     D++LMD+ MP +DG+ A
Sbjct: 488  VLVAEDNIVNQRVARGLLEKRGHRVTVVPDGAQAVAAVAAGGVDVVLMDLHMPELDGIGA 547

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T+ IR+ +                            +PI+A TA A+      C   GMD
Sbjct: 548  TKAIRALD-----------------------GALASVPIVAATAGAMEHEVRACLNAGMD 584

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
            + V+KP+  + L   L +  
Sbjct: 585  ATVAKPIDPRALFRTLARVV 604


>gi|308067783|ref|YP_003869388.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305857062|gb|ADM68850.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 891

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 103/163 (63%), Gaps = 2/163 (1%)

Query: 347 IAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQR 405
           + V +  E E+ +     E   RAK + L+ MSHE+R+P+ G++ MA +L++T+LD EQR
Sbjct: 618 VFVDRTNEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTELDEEQR 677

Query: 406 QLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKIL 464
             + ++ SS   ++Q++N+ILDLSK+E+G M L    F    VV  V       +++K +
Sbjct: 678 SYIDIITSSSGALMQILNEILDLSKIEAGKMSLLHESFVLDNVVGSVADLFMMQAMEKGI 737

Query: 465 MLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
            L+  +  ++P  ++GD +RIRQ+L NL+SNAIKFT  G+V I
Sbjct: 738 ELKWHVDQEMPGMLVGDHVRIRQVLVNLVSNAIKFTERGRVNI 780



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 46/72 (63%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTGIGIP +    LF+ + Q+     RKYGGTGLGL+ICK LV+LMGG + V S
Sbjct: 796 IEFSVTDTGIGIPADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGGSIGVDS 855

Query: 652 KVHCGSTFTFIL 663
               G+TF F L
Sbjct: 856 DEARGATFRFQL 867


>gi|197104629|ref|YP_002130006.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196478049|gb|ACG77577.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 802

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 345 EEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDRE 403
           + + V+KA+E  L +     E   RAK   LATMSHEIR+PL GV+ MA+ ++  +L   
Sbjct: 399 QNVTVRKAQERALVRAKEEAEAANRAKSAFLATMSHEIRTPLNGVLGMAQAMAMDELSPA 458

Query: 404 QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQK 462
           QR+ L V+  SG+ +L ++ND+LDLSK+E+G + LE A+F   E+V+ V  T AA +  K
Sbjct: 459 QRERLDVIRQSGESLLAILNDVLDLSKIEAGKLDLEEAEFDVEELVRTVHATFAAVAEAK 518

Query: 463 ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            L  E  +A +      GD +R+RQIL NL+SN +KFT  G V +++
Sbjct: 519 GLGFEIAVARNARGLYRGDPIRVRQILWNLVSNGLKFTDRGAVEVRV 565



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 86/164 (52%), Gaps = 21/164 (12%)

Query: 835 EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
           EK  R +     + AE    +P    +IL  EDN +N +V K+++ Q+G    +V +G E
Sbjct: 646 EKVRRRAVKAKRAPAERTPAEPDRPLRILAAEDNAMNQLVLKTLLAQVGVDPVIVPDGRE 705

Query: 895 AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
           AV A +  ++D+ILMDV MPVMDG  AT +IR+ E            +    P       
Sbjct: 706 AVAAWEQGDWDVILMDVQMPVMDGPTATAMIRTRE------------LSLGRP------- 746

Query: 955 FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
             R PI+A+TANA++    E    GMD +V+KP+   +L E L+
Sbjct: 747 --RTPIVALTANAMAHQVAEYLDVGMDGYVAKPIEAARLYEALQ 788



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 11/111 (9%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIGI    L  LFRK+ Q  A   R++GGTGLGLAIC++L  LMGG +   S   
Sbjct: 575 EVRDTGIGIAPEQLANLFRKFEQADASTTRRFGGTGLGLAICRELAGLMGGEIAAESARG 634

Query: 655 CGSTFTFILPYQ----------VSPIEENSDDPDD-LSDMADQDSVTDDVT 694
            G+ FT  LP +           +P E    +PD  L  +A +D+  + + 
Sbjct: 635 QGARFTVSLPLEKVRRRAVKAKRAPAERTPAEPDRPLRILAAEDNAMNQLV 685


>gi|429213057|ref|ZP_19204222.1| kinase sensor protein [Pseudomonas sp. M1]
 gi|428157539|gb|EKX04087.1| kinase sensor protein [Pseudomonas sp. M1]
          Length = 937

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 120/211 (56%), Gaps = 10/211 (4%)

Query: 309 YVEPVFSKSGETIG--------VNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKT 360
           ++   F+ SGE  G        ++      T + +  + +     +I+ +K  E EL + 
Sbjct: 389 WISRAFAGSGEATGEEIETEAGLHLYLCYATTRYKGEDVLFCAFSDISARKQTEAELARA 448

Query: 361 IHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVL 419
             + +    AK + LATMSHEIR+PL GV+   E+L  T+LD +Q   L  +  S   +L
Sbjct: 449 KQLADAANEAKTLFLATMSHEIRTPLYGVLGTLELLGRTELDLQQTGYLQAIQRSSSTLL 508

Query: 420 QLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEV 478
           QLI+D+LD+SK+E+G + LE  +F P E+ +  +Q+ AA+ Q K L +   +  ++P  +
Sbjct: 509 QLISDVLDVSKIEAGQLDLEPVEFSPVELTEDAVQSFAAAAQAKGLQIYACLDPELPARM 568

Query: 479 IGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            GD   IRQ+L NL+SNA+KFT  G++ +++
Sbjct: 569 RGDAACIRQVLNNLLSNAVKFTDSGRIVVRV 599



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 30/155 (19%)

Query: 847 SSAEVPETKPKP----KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
           SSA   +   KP      ++L+ EDN IN ++ K  ++ LG  +++ ++G EA+   + +
Sbjct: 801 SSAVACQGPAKPVRDLGIRVLVAEDNVINQLILKDQLEALGCVVELASDGQEALQRWRPE 860

Query: 903 NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
            +D +L D+ MP ++G +    +R              G +Q              PII 
Sbjct: 861 RFDAVLTDINMPRLNGYQLAAELR------------RRGCQQ--------------PIIG 894

Query: 963 MTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
            TANA+ E  E C A GM   + KPV    L+ CL
Sbjct: 895 ATANAMREERERCMAAGMSDCLLKPVDLDSLQRCL 929



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG GI       LF  + QV      + GGTGLGL+IC++L +LM G L + S+   
Sbjct: 615 VTDTGSGIGTEEQARLFEPFYQVR-RSVHQVGGTGLGLSICQRLTQLMNGSLKLVSEPGL 673

Query: 656 GSTFTFILPYQ 666
           GS+F+  LP +
Sbjct: 674 GSSFSLGLPLE 684


>gi|374298840|ref|YP_005050479.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551776|gb|EGJ48820.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 847

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 9/223 (4%)

Query: 296 FETELFGSKTFLIYVEPVFS-------KSGETIGVNYMGMDVTDQVRKREKMAKLREEIA 348
           F+  +   + F    +PVF        K G    +   G  + DQ  K  +MA    ++ 
Sbjct: 392 FDNVMATHERFFRAEDPVFEVEYRLRHKDGSYRWILGRGACLRDQSGKPYRMAGSHTDMT 451

Query: 349 VQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQL 407
            +K  E EL+K     E   +AK + LA MSHEIR+PL+G++ M E+    +L  E R+ 
Sbjct: 452 RRKQIEAELSKAKEDAERASKAKSEFLANMSHEIRTPLSGMLGMTELAMMNELTPEVREH 511

Query: 408 LGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILML 466
           L +   SG  +L +IND+LDLSK+E+G   LE  KF  RE+    +++ A S + K L +
Sbjct: 512 LQMARDSGKSLLAIINDVLDLSKIEAGRSNLEQKKFSLRELADSTIKSLAVSAKAKGLRI 571

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
              +  + P  ++GD  R+RQILTNLI NA+KFT  G V + +
Sbjct: 572 FHAVDTEAPDSLLGDPGRLRQILTNLIGNALKFTERGTVTVSM 614



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 84/146 (57%), Gaps = 23/146 (15%)

Query: 854 TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCM 913
           T+     +ILL EDN+IN + A  ++++LGHS+  V +GV+A+ A++   +DL+LMDV M
Sbjct: 720 TRSTGHLRILLAEDNRINSLFAAYLLEKLGHSVRAVASGVQALTALREDRFDLVLMDVRM 779

Query: 914 PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE 973
           P MDG +ATR IR          A EAG               +IPI+A+TA AL    E
Sbjct: 780 PEMDGAEATRRIR----------AGEAGD-------------PKIPIVALTAYALQGDRE 816

Query: 974 ECFANGMDSFVSKPVTFQKLKECLEQ 999
              A GMD +VSKP+   +L+  +E+
Sbjct: 817 RFLAVGMDDYVSKPLDTAELERVIER 842



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 2/75 (2%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQ-VSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           + +R  V DTGIGIPE+ L  +F+ + Q V++ HA  YGGTGLGL I K+LVE+MGGR+ 
Sbjct: 626 ITLRTVVKDTGIGIPESMLEDIFKSFNQGVTSAHA-TYGGTGLGLTISKELVEMMGGRIW 684

Query: 649 VTSKVHCGSTFTFIL 663
             S++  GS F F +
Sbjct: 685 AESRMGHGSAFHFTV 699


>gi|378949415|ref|YP_005206903.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens F113]
 gi|359759429|gb|AEV61508.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens F113]
          Length = 622

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 106/170 (62%), Gaps = 2/170 (1%)

Query: 340 MAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNT 398
           + ++R  +   +  E  LN+  +  E+  R+K   LATMSHEIR+P+ GV+   E+L+ +
Sbjct: 203 LLRMRAHLQQLRVNEQVLNQAKNAAEDADRSKTSFLATMSHEIRTPMYGVIGATELLARS 262

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
            LD EQR+LL  + SSG  +L LI++ILDL+K+E+G ++L+   F  R +V   ++    
Sbjct: 263 ALDPEQRRLLTTIHSSGRTLLSLIDNILDLAKIEAGKLELKPRVFEVRALVSSCMEIIRQ 322

Query: 459 SLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           ++Q K + LE   + DVP  V  D+  +RQIL NL+ NA+KFT  GKV +
Sbjct: 323 NIQDKPIELEAQFSPDVPPLVKTDMDCLRQILINLLGNAVKFTEAGKVSL 372



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 49/82 (59%)

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
           W+   + DTGIGIP      LF+ + Q     ++++ G+GLGL+ICK L+E   G L+ T
Sbjct: 384 WLDFSIRDTGIGIPAERQDNLFKPFAQFKGPASQRFTGSGLGLSICKNLLEAQQGTLSFT 443

Query: 651 SKVHCGSTFTFILPYQVSPIEE 672
           S+   GSTF+F LP  +  + E
Sbjct: 444 SESGVGSTFSFSLPLALFSVSE 465



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 24/138 (17%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           ILLVE++ ++  VA +M+ +LG++  + ++G+EA++       ++ILMD+ MPVMDGL+A
Sbjct: 489 ILLVENHPVSQKVAMAMLHELGYAPGLASDGLEALNRCTASMPEVILMDINMPVMDGLEA 548

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            R IR                   +P   +        I+A TA+  S   E   A G D
Sbjct: 549 VRRIRE------------------LPKGNTCY------IVAFTASVFSSEIERFRAAGAD 584

Query: 982 SFVSKPVTFQKLKECLEQ 999
             ++KP  FQ L   L++
Sbjct: 585 DILTKPANFQALTRVLQR 602


>gi|434393415|ref|YP_007128362.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
 gi|428265256|gb|AFZ31202.1| multi-sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
          Length = 1079

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 116/183 (63%), Gaps = 5/183 (2%)

Query: 329 DVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTG 387
           D+T+Q   ++ + +  +E++ Q  +E E  KT    E   R K Q LA MSHEIR+P+  
Sbjct: 395 DITEQYLNQKMLVRRTQELS-QANQELEKAKTD--AEAATRVKSQFLANMSHEIRTPMNA 451

Query: 388 VVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447
           +V MA +L +T L ++Q++ L  + +S +++L L+ND+L+LSK+ESG ++LE   F  R 
Sbjct: 452 IVGMANLLLSTPLSQQQKEFLETIRTSSNVLLILLNDVLELSKIESGKLELEQRAFNLRT 511

Query: 448 VVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVG 506
            V+  ++  A  + +K + L   I  D P  ++GDV R+RQIL NL+SN++KFT +G+V 
Sbjct: 512 CVEEAVEILAFKAAEKNIELAYIIHPDTPSNIVGDVTRLRQILVNLLSNSVKFTHQGEVV 571

Query: 507 IKL 509
           + +
Sbjct: 572 VSV 574



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 23/137 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +ILL EDN +N  +A  +++ LG+  DV +NG+E +  ++ QNYD++LMDV MP MDGL 
Sbjct: 816 RILLAEDNIVNQKIALHILQSLGYHADVASNGLEVLDTLRRQNYDVVLMDVQMPKMDGLT 875

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR I             E G E             R  IIAMTANA+ E  EEC A GM
Sbjct: 876 ATRQI-----------VQEFGAE------------IRPRIIAMTANAMQEDKEECLAAGM 912

Query: 981 DSFVSKPVTFQKLKECL 997
           + ++SKP+  ++L + L
Sbjct: 913 NDYISKPIQVEELTQAL 929



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 47/72 (65%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I+  V DTGIGIP   +  LF+ + Q  A   R+YGGTGLGLAI KQL E+M GR+ V +
Sbjct: 591 IQFAVKDTGIGIPIETIEHLFQAFSQGDASITREYGGTGLGLAIAKQLCEMMQGRIWVET 650

Query: 652 KVHCGSTFTFIL 663
           +   GSTF F +
Sbjct: 651 QADQGSTFYFTI 662


>gi|400595315|gb|EJP63120.1| putative histidine kinase HHK6p [Beauveria bassiana ARSEF 2860]
          Length = 1379

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 117/206 (56%), Gaps = 11/206 (5%)

Query: 312 PVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK 371
           P   K     GV  + MDVT+     E    LRE+    +AK   +       E      
Sbjct: 749 PQNGKRANVEGVIGVVMDVTELKDSEEA---LREQ---SRAKHRAIANEAAANEANRLKS 802

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LA MSHEIR+P+TGV+ MAE+L +  LD EQR  +  + SS   +L +INDILD SKV
Sbjct: 803 QFLANMSHEIRTPITGVLGMAELLGDMCLDEEQRDYVDNIQSSATSLLTVINDILDFSKV 862

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVP--IEVIGDVLRIRQI 488
           ESG + +E  +F    ++K V++    +++ K L  + +I DD+   + VIGD  R+RQI
Sbjct: 863 ESGRLDIEEVQFSLSIILKEVVRMLKFAVERKNLDFQSNIGDDIENDLAVIGDPGRVRQI 922

Query: 489 LTNLISNAIKFTPEGKVGIKLYVVPE 514
           +TNL++N+IKFT +G V  +  VV E
Sbjct: 923 ITNLLTNSIKFTSQGYV--RFSVVKE 946



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 34/230 (14%)

Query: 777  HSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEK 836
            H P+  N   V+ G           Q+  + S + SE    M  T   ++   + E++ +
Sbjct: 1029 HKPQRRNAQNVAAGS-----IPDRLQSDLSISCNSSEFENAMAATPAASDGSGLSELRRR 1083

Query: 837  PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
                 +S  S   ++P ++ +    IL+VEDN +N  +A   +++LG  +    NG EA+
Sbjct: 1084 YS--VRSSQSVEQDLPRSE-RAAFHILVVEDNAVNQKIATRTIRKLGFQVTAAWNGREAL 1140

Query: 897  HAV----QCQNY--DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950
              V    + +N   D+ILMDV MP++DG K T L+R                    P  G
Sbjct: 1141 EYVLGASEGRNVKPDIILMDVQMPIIDGYKCTHLMRHHR-----------------PYKG 1183

Query: 951  SSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                   +PI+AMTA+A+    E+C   GMD +++KPVT   L+  L ++
Sbjct: 1184 ---LIHNVPIVAMTASAIQGDREKCKRAGMDDYLAKPVTMSILERMLIRW 1230



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%)

Query: 589  TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            ++ ++  + DTGIGI E+    LF+ + Q  A  AR++GGTGLGL ICK L++LM G +T
Sbjct: 952  SIIVKFVIEDTGIGIQEDVRRKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMRGEIT 1011

Query: 649  VTSKVHCGSTFTFILPYQ 666
            + S V  G+T TF +P+ 
Sbjct: 1012 LESTVGSGTTATFWIPFH 1029


>gi|359459603|ref|ZP_09248166.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
           5410]
          Length = 1038

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 100/163 (61%), Gaps = 4/163 (2%)

Query: 355 TELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
           +EL    H  E   +AK Q LA MSHEIR+P+  V+ M  +L NT L+ +Q+  +  + S
Sbjct: 274 SELQSAKHEAEAANQAKSQFLANMSHEIRTPMNAVIGMTGLLLNTPLEAQQQDFVETIRS 333

Query: 414 SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIAD 472
           SGD +L LINDILD SK+E+G + LE   F  R  ++  L   A+ + +K L L   I  
Sbjct: 334 SGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASKASEKNLELAYLINP 393

Query: 473 DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
             P  ++GD+ R+RQ+L NL++NA+KFT EG+V +  YV  +P
Sbjct: 394 PTPTAILGDITRLRQVLVNLLNNALKFTGEGEVVV--YVSSKP 434



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 30/182 (16%)

Query: 825 NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP-------KILLVEDNKINVMVAKS 877
           N+P +  ++Q    ++  +P     + P+ +  P         +ILL ED  +N  VA  
Sbjct: 652 NKPVQQAQLQSVLAQVLGNPLIKVEQAPDVQENPTNLGDQHPLRILLAEDMVVNQKVALL 711

Query: 878 MMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937
            +KQLG+  DV NNG+E + A++ Q YD++LMDV MP MDGL ATR     E    W   
Sbjct: 712 TLKQLGYRADVANNGLEVIEALERQAYDVVLMDVQMPEMDGLTATR-----EVCQRWSPE 766

Query: 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
                              R  IIAMTANA+    E C   GMD++++KPV   +L++ L
Sbjct: 767 ------------------DRPHIIAMTANAMQGDREMCLDAGMDAYITKPVRIHELRDVL 808

Query: 998 EQ 999
            +
Sbjct: 809 SR 810



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 62/89 (69%), Gaps = 6/89 (6%)

Query: 587 EATVW-IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
           EAT + I+ DV DTGIGIP + L  LF+ + QV A   RK+GGTGLGLAI KQL ELMGG
Sbjct: 451 EATPYEIQFDVKDTGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLAISKQLSELMGG 510

Query: 646 RLTVTSKVHCGSTFTFI-----LPYQVSP 669
           ++ V+S+V  GSTF+F      +P  VSP
Sbjct: 511 KIWVSSEVSVGSTFSFTITASEIPNYVSP 539


>gi|220922969|ref|YP_002498271.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219947576|gb|ACL57968.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 969

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 121/208 (58%), Gaps = 24/208 (11%)

Query: 308 IYVEPVFSK---SGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT 364
           ++ E VF +   +GE   +  +  DVT++VR+  ++         ++AK           
Sbjct: 539 VWAEAVFQRVEDAGEVTIITAI-RDVTERVRQERRL---------EQAKVA--------A 580

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILS-NTKLDREQRQLLGVMISSGDLVLQLI 422
           E   R K + LA MSHE+R+PLTG++ + ++L+ +T L   QR L+G+   +G  +L ++
Sbjct: 581 EAGARVKAEFLANMSHELRTPLTGMLGVHDLLAGDTSLSAAQRHLIGLAQEAGRSLLAIV 640

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGD 481
           NDILD SK+E+G M +E   F  R +V+   +  A S + K L L  +I  DVP   +GD
Sbjct: 641 NDILDFSKIEAGQMAIERVPFSLRALVESCRELVAESAKGKPLRLVAEIEGDVPDWYVGD 700

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGIKL 509
             R+RQIL NL SNA+KFTP+G++ +++
Sbjct: 701 PTRLRQILLNLASNAVKFTPQGEIALRV 728



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 80/140 (57%), Gaps = 22/140 (15%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ-NYDLILMDVCMPVMDGL 919
           +IL+ EDN+IN  + + ++ + GH + +V++G +A+ AV+    +D++LMDV MPV+DG+
Sbjct: 836 RILVAEDNEINQEIIRIVLSRRGHDVVLVSDGAQAIEAVKAGPAFDIVLMDVQMPVLDGI 895

Query: 920 KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            AT  +R++E                      +   +  PI+A+TANA+    E C A G
Sbjct: 896 SATAAVRTWE---------------------RAQGRRPTPIVALTANAMDADVERCRAGG 934

Query: 980 MDSFVSKPVTFQKLKECLEQ 999
           MD+ V KP+ + +L   +E+
Sbjct: 935 MDAHVGKPINWTELFGVVER 954



 Score = 89.7 bits (221), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 50/73 (68%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R +V DTGIGIP + LP LF ++ Q      R+YGGTGLGL ICK+LVELMGG + V S
Sbjct: 737 VRVEVTDTGIGIPADKLPLLFERFSQADTSTTRQYGGTGLGLVICKRLVELMGGAIGVES 796

Query: 652 KVHCGSTFTFILP 664
               GSTF F LP
Sbjct: 797 IPGQGSTFWFELP 809


>gi|197116777|ref|YP_002137204.1| PAS/PAC domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197086137|gb|ACH37408.1| sensor histidine kinase response regulator, PAS domain-containing
           [Geobacter bemidjiensis Bem]
          Length = 647

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 98/139 (70%), Gaps = 1/139 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+  ++ M ++L+ T+L  EQ++ +  +++S + +L +INDILDLSKV
Sbjct: 180 EFLANMSHEIRTPMNSIIGMTQLLAYTELSAEQKEYVEGILTSSEGLLAIINDILDLSKV 239

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G ++LE+  F  R+ +  +++T  AA+ +K L L+  I +++P  V+GD LR++Q+L 
Sbjct: 240 EAGKIELESRNFSLRQSINEIIRTQTAAAHEKGLQLKVSIPEEIPDAVVGDRLRLKQVLL 299

Query: 491 NLISNAIKFTPEGKVGIKL 509
           N+I NAIKFT  G + + +
Sbjct: 300 NIIGNAIKFTASGSIAVTV 318



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 32/175 (18%)

Query: 827 PQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSI 886
           P ++C  + +P       +S +          K +ILL +D ++N  + + ++ +LGH +
Sbjct: 402 PFRLCAKKARP------KASLNTAKKAVWDGAKLRILLADDQEMNRNIMEKLLGRLGHDL 455

Query: 887 DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAM 946
           +   +G EA+   +  N+DLILMDV MP +DG +ATR+IR                E   
Sbjct: 456 ESAADGGEALGKWEKGNFDLILMDVEMPGIDGTEATRVIR----------------ETET 499

Query: 947 PSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV----TFQKLKECL 997
           P        KR PIIA+TA+AL    E     G D +V KPV      Q++K CL
Sbjct: 500 PLG------KRTPIIALTAHALKSHQEMLLGLGYDGYVPKPVEIPTLLQEMKRCL 548



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%)

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
           ++ E  E    I   V DTGIGI   +L  +F  + Q      R+YGGTGLGL+I  +LV
Sbjct: 319 ALAEKKEEAARITFSVTDTGIGIAPESLDRIFAPFAQEDTSTTRRYGGTGLGLSISTKLV 378

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQV 667
            LMGGR+   S+ + GSTF F +P+++
Sbjct: 379 RLMGGRIWAESRKNAGSTFHFEIPFRL 405


>gi|398879116|ref|ZP_10634218.1| signal transduction histidine kinase [Pseudomonas sp. GM67]
 gi|398197477|gb|EJM84456.1| signal transduction histidine kinase [Pseudomonas sp. GM67]
          Length = 940

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 155/336 (46%), Gaps = 76/336 (22%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +   E  L++   + +    AK + LATMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 432 DISTRTQIEDALDQARQLADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTELDAQQ 491

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
              L  +  S   +LQLI D+LD+SK+E+G + LE  +F   E++  V+Q  AAA+  K 
Sbjct: 492 TNYLRTIEGSSATLLQLICDVLDVSKIEAGQLALELTEFSVLELIHEVIQGYAAAAHGKG 551

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLK 523
           L L   I   +P  +IGDV RIRQIL NL+SNA+KFT  G + +++ ++      ++G  
Sbjct: 552 LDLYTVIDPKLPERMIGDVSRIRQILYNLLSNAVKFTDAGHIVLRVSLI-----GRDG-- 604

Query: 524 QKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMD 583
           +++  +   +D         K  T  DQ    +      YQ   H +             
Sbjct: 605 ERANLFWQVSDT-------GKGITQEDQTRIFEPF----YQTRGHAN------------- 640

Query: 584 EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
                       +  TG+G+P                              IC++L  LM
Sbjct: 641 -----------VIAGTGLGLP------------------------------ICQRLTHLM 659

Query: 644 GGRLTVTSKVHCGSTFTFILPYQ--VSPIEENSDDP 677
            G + V S+   GS+F+  L  +   SP   +S  P
Sbjct: 660 NGSIRVVSEPGLGSSFSLTLSLEQPSSPALNDSFTP 695



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 26/139 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            IL+ EDN IN ++    +++LG + ++  NG EA+   +   +D+IL DV MP  +G + 
Sbjct: 820  ILVAEDNVINRLILHDQLQELGCTAELAGNGEEALTMWRRGRFDMILSDVNMPRKNGYEL 879

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
             R +R                       G +     +PII  TANA+      C A GM+
Sbjct: 880  ARELRRM---------------------GCN-----VPIIGATANAMRGEEALCLAAGMN 913

Query: 982  SFVSKPVTFQKLKECLEQY 1000
              + KP T Q L   L  Y
Sbjct: 914  HCLVKPFTLQALHNQLAPY 932


>gi|395003779|ref|ZP_10387887.1| signal transduction histidine kinase [Acidovorax sp. CF316]
 gi|394318262|gb|EJE54711.1| signal transduction histidine kinase [Acidovorax sp. CF316]
          Length = 745

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/173 (39%), Positives = 106/173 (61%), Gaps = 5/173 (2%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDR 402
           +R++ A Q A E      +   +  +   + LAT+SHEIR+PL GV+ M E+L  + L R
Sbjct: 210 VRKDYAAQWALE---RARLAAEQLALVKSEFLATISHEIRTPLNGVLGMNELLLGSGLSR 266

Query: 403 EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF-RPREVVKHVLQTAAASLQ 461
           EQR+  G + +SG  +L LI+D+LD+SK+E+G ++LE A     RE+          +L 
Sbjct: 267 EQREWAGAVQASGRHLLALIDDVLDVSKIEAGQLQLEQAGVDLRREIGAAQAMFVQPALA 326

Query: 462 KILMLEGDIADDVP-IEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
           K L L+  +   +P  +++GD LR+RQI+ NLI NAIKFT +G V ++++V P
Sbjct: 327 KGLNLQAQVKWQMPECQLVGDALRLRQIVANLIGNAIKFTEQGSVNVQVWVAP 379



 Score = 96.3 bits (238), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 22/146 (15%)

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
            P+ +  +LLVED+ +N  VA  M+++LG +    ++G +A+  V+  ++D +LMD  MPV
Sbjct: 487  PRLQGTVLLVEDHPVNRAVAAGMLRKLGLAWREAHDGAQAIEHVRAHDFDAVLMDCQMPV 546

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            +DG  A+R IR   D                   G+S     +PIIA+TANA ++ A  C
Sbjct: 547  VDGYAASRAIRGLPD-----------------GRGAS-----LPIIALTANAGADDAARC 584

Query: 976  FANGMDSFVSKPVTFQKLKECLEQYF 1001
             A+GMD F++KP     L   L  + 
Sbjct: 585  RASGMDGFIAKPYGIGTLAAALAPWL 610



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 43/73 (58%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP  A   +F ++ Q      R++GGTGLGLAIC+ L   MGG + V S+   
Sbjct: 392 VQDTGIGIPAEAQERIFERFAQADGSTTRRFGGTGLGLAICRDLARAMGGDVAVQSQPGA 451

Query: 656 GSTFTFILPYQVS 668
           GS FT  L   V+
Sbjct: 452 GSRFTVQLELPVA 464


>gi|226939943|ref|YP_002795016.1| Sensor protein [Laribacter hongkongensis HLHK9]
 gi|226714869|gb|ACO74007.1| Sensor protein [Laribacter hongkongensis HLHK9]
          Length = 1205

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/246 (34%), Positives = 128/246 (52%), Gaps = 21/246 (8%)

Query: 312 PVFS-------KSGETIGVNYMGMDVTDQVRKRE-KMAKLREEIAVQKAKETELNKTIHI 363
           PVF        +SG+   V   G  VT Q   R  +M     +I  +KA E  +      
Sbjct: 497 PVFDSEIRIRDQSGQYRWVRVCGRVVTRQASGRALRMIGTLADIEARKASEAAILSAKEA 556

Query: 364 TEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
            EE  RAK   LA MSHEIR+P+ G++ M  +   T+L  EQR+ L ++ SS  L+L +I
Sbjct: 557 AEEASRAKSDFLANMSHEIRTPMNGILGMTRLCLATELSEEQREYLDMVDSSAQLLLTVI 616

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGD 481
           NDILD SK+E+G ++L A  F  RE+V+  LQ  A  + +K L +  DI   +      D
Sbjct: 617 NDILDFSKIEAGKLELSATDFSLRELVRDTLQPLALKAGEKGLEILCDIPPSLADSRHAD 676

Query: 482 VLRIRQILTNLISNAIKFTPEGKV---------GIKLYVVPEP--PFAKEGLKQKSKAYQ 530
             R+RQ+L NL+ NA+KFT  G+V         G+  + V +     ++EGL Q  +++ 
Sbjct: 677 ATRLRQVLGNLLGNAVKFTEVGEVELQVREQADGLLRFSVRDTGIGISREGLAQVFESFS 736

Query: 531 SATDAV 536
            A  ++
Sbjct: 737 QADSSI 742



 Score = 99.4 bits (246), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 22/136 (16%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            P  ++LLVEDN +N  +A  ++++LGH + + +NG EAV     + +D+I+MDV MP MD
Sbjct: 952  PPLRVLLVEDNPVNQRLASRLLEKLGHGVTLASNGQEAVDWYGREQFDMIMMDVQMPFMD 1011

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +AT  IR+ E  G+                      +R PIIAMTA+A+    E C  
Sbjct: 1012 GFEATSAIRALELGGS----------------------RRQPIIAMTAHAMRGDRERCLE 1049

Query: 978  NGMDSFVSKPVTFQKL 993
             GMD +V KP+   +L
Sbjct: 1050 AGMDGYVPKPIMLDEL 1065



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 44/73 (60%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTGIGI    L  +F  + Q  +  +R+YGGTGLGL I  +LV +MGG L V S
Sbjct: 712 LRFSVRDTGIGISREGLAQVFESFSQADSSISRRYGGTGLGLTISSRLVGMMGGTLQVES 771

Query: 652 KVHCGSTFTFILP 664
           +   GS F F +P
Sbjct: 772 EAGLGSCFHFAVP 784


>gi|70730998|ref|YP_260739.1| sensor histidine kinase/response regulator [Pseudomonas protegens
           Pf-5]
 gi|68345297|gb|AAY92903.1| sensor histidine kinase/response regulator [Pseudomonas protegens
           Pf-5]
          Length = 1039

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 120/215 (55%), Gaps = 21/215 (9%)

Query: 301 FGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKT 360
           F  ++F I   P   ++ + +   +  +    Q+ ++   AK       Q A +    K+
Sbjct: 404 FDGRSFYIAFAPTRYRNQDVLICAFADLSARAQMEQQLTQAK-------QAADKANGAKS 456

Query: 361 IHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL-GVMISSGDLVL 419
           +            LATMSHEIR+PL GV+   E++  T LDREQRQLL  + +SSG L+L
Sbjct: 457 V-----------FLATMSHEIRTPLYGVLGSLELMGLTDLDREQRQLLERIQVSSG-LLL 504

Query: 420 QLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEV 478
           Q+I+DILD++++ESG + L    F PR +V+    +   S + K L+L   +  ++P  +
Sbjct: 505 QIISDILDITRIESGQLSLGDQLFDPRALVQRCTASFVDSARNKGLLLFSWVDPELPPAL 564

Query: 479 IGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
           +GD  RI QILTNLISNA+KFT  G+V ++    P
Sbjct: 565 LGDPGRISQILTNLISNAVKFTHSGQVIVRARAEP 599



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 26/139 (18%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +L+ EDN IN       ++QLG    +  +G EA+   +  +YDL+L DV MP M+G +
Sbjct: 815 NVLVAEDNPINQATLSHQLQQLGCRNTLAADGAEALDLWRIGDYDLLLTDVNMPRMNGYE 874

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            T ++R+  D                            PII +TANA+ +    C A GM
Sbjct: 875 LTCILRAAGDDR--------------------------PIIGITANAMCDEEARCQACGM 908

Query: 981 DSFVSKPVTFQKLKECLEQ 999
           D+++ KPV  Q L+  L +
Sbjct: 909 DAWLVKPVPLQTLRASLAR 927



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           +  V +   V DTGIGI +     LF  + Q+ A H+    G GLGL+IC +L  LMG +
Sbjct: 602 QGRVLLSLQVADTGIGIGKEEQQQLFIPFYQIDA-HSHTVHGAGLGLSICAKLAALMGSQ 660

Query: 647 LTVTSKVHCGSTFTFILPYQVSPIEENSDDPD 678
           + +TS++  GS+F+  L   V+        PD
Sbjct: 661 IHLTSELGLGSSFSMQLELPVASDPNAERQPD 692


>gi|390455175|ref|ZP_10240703.1| phytochromeB [Paenibacillus peoriae KCTC 3763]
          Length = 884

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/163 (39%), Positives = 101/163 (61%), Gaps = 2/163 (1%)

Query: 347 IAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQR 405
           + V    E E+ +     E   RAK + L+ MSHE+R+P+ G++ MA +L++T+LD EQR
Sbjct: 618 VFVDITNEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTELDEEQR 677

Query: 406 QLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKIL 464
             + ++ SS   ++Q++N+ILDLSK+E+G M L    F    V+  V       +++K +
Sbjct: 678 SYIDIITSSSSALMQILNEILDLSKIEAGKMALLHEPFELENVMGSVADLFLRQAMEKGI 737

Query: 465 MLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
            LE  +  ++P   IGD +RIRQ+L NL+SNAIKFT  G++ I
Sbjct: 738 QLEWHVDQELPGVFIGDQVRIRQVLVNLVSNAIKFTERGRINI 780



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 46/72 (63%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTGIGIP +    LF+ + Q+     RKYGGTGLGL+IC+ LV LMGG + V S
Sbjct: 796 IEFSVTDTGIGIPADRQHLLFQPFSQIHPALNRKYGGTGLGLSICENLVGLMGGSIGVDS 855

Query: 652 KVHCGSTFTFIL 663
           +   GSTF F L
Sbjct: 856 EDAQGSTFRFQL 867


>gi|428775680|ref|YP_007167467.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
 gi|428689959|gb|AFZ43253.1| multi-sensor hybrid histidine kinase [Halothece sp. PCC 7418]
          Length = 1554

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 133/232 (57%), Gaps = 17/232 (7%)

Query: 288  LPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVR--KREKMAKLRE 345
            LP    +  E++    K+ +IY  P++ + G+  G  ++G D   ++R  K+ ++  LR 
Sbjct: 802  LPWDLRVILESQ--AIKSIIIY--PLYVQ-GKFFG--FIGFDECVEIRQWKQSELELLRT 854

Query: 346  EIA-VQKAKETEL--NKTIHITEETMRAKQ----MLATMSHEIRSPLTGVVSMAEILSNT 398
              + +  A E  L     I   ++  +A Q     LA MSHEIR+P+  ++ M  +L +T
Sbjct: 855  VASMIGNAYERRLMEQSVIDQRDKANKANQAKSEFLANMSHEIRTPMNAIIGMTGLLLDT 914

Query: 399  KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA- 457
             L+ EQ++   ++ +SGD +L LINDILD SK+ESG + LE  +F  R  V+  L     
Sbjct: 915  PLNNEQKEFTEIIRNSGDTLLTLINDILDFSKIESGKLALEPTRFSLRHCVESALDLVTQ 974

Query: 458  ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             +L+K L L   +  ++P E++ D  R+RQIL NL+SNA+KFT EG+V +++
Sbjct: 975  KALEKNLELAYFVDPNLPSEILADEARLRQILVNLLSNAVKFTEEGEVLVQV 1026



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 87/160 (54%), Gaps = 23/160 (14%)

Query: 840  ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
            ++ S  S +   P+   +   KILL EDN +N  VA  M+++LG+  DVV NG+E + A+
Sbjct: 1281 LTSSNLSDTNMSPQLADQYPFKILLAEDNVVNQKVALRMLERLGYRADVVANGLEVLEAL 1340

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
            + Q+YD+ILMDV MP +DG+  TRLIR   D  ++                         
Sbjct: 1341 RRQSYDVILMDVQMPELDGISTTRLIREHNDNSDYPW----------------------- 1377

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            IIAMTANA+ E+ +     GM+ +++KPV   +L   L+Q
Sbjct: 1378 IIAMTANAVGEAKQAGLEAGMNEYLTKPVKLDQLSRVLQQ 1417



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 27/122 (22%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK--- 652
            V+DTG+GIP + +  LFR + QV + + R+  G+GLGL I ++L ELMGG++ VTS    
Sbjct: 1042 VHDTGVGIPPDKMNRLFRPFSQVDSSYTRRMMGSGLGLVISRRLSELMGGQMWVTSHGAI 1101

Query: 653  ----------------------VHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVT 690
                                  V+ GSTF F +   V+    N D    L+    Q  V 
Sbjct: 1102 AGSNPNDWQPEENCLPLSPSFDVNKGSTFYFTMTSDVATARRNFDTLQPLT--GKQVLVV 1159

Query: 691  DD 692
            DD
Sbjct: 1160 DD 1161


>gi|183222624|ref|YP_001840620.1| putative two-component sensor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912658|ref|YP_001964213.1| signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167777334|gb|ABZ95635.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781046|gb|ABZ99344.1| Putative two-component sensor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 536

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 110/180 (61%), Gaps = 10/180 (5%)

Query: 329 DVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGV 388
           DV+ QV  REK+  LRE++ V K +E E  K       +      LA+MSHEIR+PL  +
Sbjct: 129 DVSQQV-TREKL--LREQMVVAKEREVEAKKA------SQAKTDFLASMSHEIRTPLNAI 179

Query: 389 VSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448
           + MA+ L+ T L  EQ + L V+ +SG  +  +INDILDLS++ESG +++E  +F  R++
Sbjct: 180 LGMADTLTETNLTNEQMEYLTVLRNSGKALYNIINDILDLSRIESGKLEIEHIEFSIRDL 239

Query: 449 VKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           +K  +       + K + +   ++DD+  ++ GD  RI+QIL NLI NA+KFT  GK+ +
Sbjct: 240 LKETISLFLMKAKSKGIQISYSVSDDIAEQIKGDSTRIQQILINLIGNAMKFTEIGKIYV 299



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 18/139 (12%)

Query: 850 EVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909
           E+P+ +  PK +ILL ED++ NV + K+ +++    + +  NG  A+   Q + +D++LM
Sbjct: 401 ELPDAENFPKCRILLAEDSEENVFIIKTFLRKYPIELVIAKNGKIALQMFQSEKFDIVLM 460

Query: 910 DVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALS 969
           D+ MP MDGL+AT+ IR +E   N D                      IPIIA++AN   
Sbjct: 461 DMQMPEMDGLEATKQIRLYEHNQNIDPLFA------------------IPIIAISANVQK 502

Query: 970 ESAEECFANGMDSFVSKPV 988
           E   + F  G+ S++SKPV
Sbjct: 503 EDISKSFMAGITSYISKPV 521



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 47/71 (66%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP   L ++F  + QV +   R+YGGTGLGL I K+L+ +M G ++V S++  
Sbjct: 314 VEDTGIGIPNEKLNSIFESFTQVDSSTTRRYGGTGLGLTITKKLILMMNGEISVQSQLGK 373

Query: 656 GSTFTFILPYQ 666
           GS F   +PY+
Sbjct: 374 GSKFVLNIPYE 384


>gi|390950252|ref|YP_006414011.1| signal transduction histidine kinase [Thiocystis violascens DSM
           198]
 gi|390426821|gb|AFL73886.1| signal transduction histidine kinase [Thiocystis violascens DSM
           198]
          Length = 712

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 95/150 (63%), Gaps = 5/150 (3%)

Query: 365 EETMRAKQ----MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQ 420
           E+ +RA Q     LA M+HE+R+PLTGV+ MA +L  T+LD EQR  +  + SS   +  
Sbjct: 184 EDAVRANQAKGDFLAFMTHELRTPLTGVIGMATLLKGTQLDLEQRDYVDSITSSAQALNS 243

Query: 421 LINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVI 479
           LI DILD SK+++  + LE   F PR ++++V +     +L K L L   +  DVP +  
Sbjct: 244 LIGDILDFSKIDARKLTLECIPFDPRAMLRNVCEILVGLALSKNLELICQVDPDVPGQAT 303

Query: 480 GDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           GD LR+RQIL NLI NAIKFT +G+V +++
Sbjct: 304 GDPLRVRQILFNLIGNAIKFTEQGQVSLRV 333



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 47/74 (63%)

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
           ++  ++ DTGIGIP++ LPTLF  + Q      R++GG+GLG  I ++L  LMGG +TV 
Sbjct: 346 YLLLEIADTGIGIPQDKLPTLFESFRQADDSTTRRFGGSGLGTTIARELTLLMGGTITVE 405

Query: 651 SKVHCGSTFTFILP 664
           S+   GS F   LP
Sbjct: 406 SEEGRGSCFRVSLP 419



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 25/148 (16%)

Query: 853 ETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
           E  P  +P ++L+ EDN+I   V  + + ++G +     +G  A+ A     Y + ++D 
Sbjct: 579 ENPPSARPIRVLVAEDNEIAAKVITTFLTKMGFANQRFRDGEAALTAALNGGYQIAIVDF 638

Query: 912 CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
            MP +DG+   +  R+         A E                  +PI+A+TA A ++ 
Sbjct: 639 HMPKLDGIGFAKRYRTL--------APE----------------YPLPIVALTATAAADV 674

Query: 972 AEECFANGMDSFVSKPVTFQKLKECLEQ 999
            + CF  GMD F++KPV   +L++ +E+
Sbjct: 675 RQACFDAGMDGFLAKPVNPDELRQTVER 702


>gi|291287080|ref|YP_003503896.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884240|gb|ADD67940.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1322

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 114/201 (56%), Gaps = 32/201 (15%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           + P+ +  GE   VNY+GM               +E I       TEL +     EE+ R
Sbjct: 677 IAPIMNDRGEI--VNYLGM---------------KENI-------TELKQARAKAEESNR 712

Query: 370 AKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK M LA MSHEIR+PL G++   E+L +T LD EQ + L  +  S D +L+++NDILDL
Sbjct: 713 AKSMFLANMSHEIRTPLNGLMGFLELLKHTPLDSEQAEYLSTIKFSADTLLKILNDILDL 772

Query: 429 SKVESGVMKLEAAK----FRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLR 484
           SK+ESG+M +E+++    F+    VK     A+A   K + L   I   VP  ++GD LR
Sbjct: 773 SKIESGMMDIESSEMNLGFQILSTVKAFYAKASA---KGVRLYSYIDPQVPSSLLGDALR 829

Query: 485 IRQILTNLISNAIKFTPEGKV 505
           I Q+++NL++NA+KFT  G V
Sbjct: 830 ISQVVSNLLNNAVKFTHAGGV 850



 Score = 85.9 bits (211), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 21/140 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +LL EDN +N+ + ++++++LG   DV  NG  AV   + + YDLILMD+ MPVMDG++A
Sbjct: 1082 VLLAEDNSVNIRLMEALLRRLGVDADVAENGQIAVDLCETKKYDLILMDINMPVMDGIEA 1141

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
             R IR  E+              A+  S       R PI A+TA++L++       +  +
Sbjct: 1142 VRTIREHEN--------------ALYRS-------RTPIYALTAHSLTDLGGRINKSDFE 1180

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             ++SKP+  + L++ L+++ 
Sbjct: 1181 GYLSKPINLEALEKILKKHL 1200



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 588 ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
           ATV I  +  DTG+GIP+  + ++F  + QV +   RKYGGTGLGL I + L++LM   +
Sbjct: 865 ATVLIAVE--DTGVGIPDGKIKSVFEPFAQVDSSVTRKYGGTGLGLTISRNLLKLMKSDI 922

Query: 648 TVTSKVHCGSTFTFILPYQVSPIEENSD 675
            + S+   GS F F L  +   I  NSD
Sbjct: 923 ELKSEKGKGSKFYFELVLK-KTISVNSD 949


>gi|115391627|ref|XP_001213318.1| hypothetical protein ATEG_04140 [Aspergillus terreus NIH2624]
 gi|114194242|gb|EAU35942.1| hypothetical protein ATEG_04140 [Aspergillus terreus NIH2624]
          Length = 1891

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/172 (38%), Positives = 107/172 (62%), Gaps = 2/172 (1%)

Query: 346  EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
            +I  +K  E ELNK +      M +K +  + MSHEIR+PL G++     + +T+LD +Q
Sbjct: 1183 DINDRKNLERELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQLDTDQ 1242

Query: 405  RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKI 463
            R++L  + +S   + +L+++ILD+S+VE+G M L  + F  R V++ V+ T A+ ++ K 
Sbjct: 1243 RRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSLVNSWFHVRSVIEDVIDTVASRAIDKG 1302

Query: 464  LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
            L +   +  DVP  VIGD  RIRQ+L NL+ NA+KFT +G++ I   +  EP
Sbjct: 1303 LEINYLMDVDVPPMVIGDRFRIRQVLINLVGNAVKFTAQGEIHICCSIYHEP 1354



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 24/140 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMPVMD 917
            +ILLVED++ N MV    + ++    +   NG E    V  +    Y LI+ D+ MPV +
Sbjct: 1745 RILLVEDDETNRMVMMKYLDKIKVMAETAANGEECTGMVFSKEPGYYSLIICDIQMPVKN 1804

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G    R IR++E                       NH+ +IPI+A++ANA+++  E+   
Sbjct: 1805 GYDTCREIRAWE---------------------LRNHYPQIPIMALSANAMTDQIEDAAR 1843

Query: 978  NGMDSFVSKPVTFQKLKECL 997
             G + +V+KP+   +L + +
Sbjct: 1844 AGFNDYVTKPIKHNELGKMM 1863



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 47/77 (61%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            E  + +  DV DTG G        L +++ Q+  + ++++ G+GLGL + KQLVE+ GG+
Sbjct: 1360 ETELLLNFDVVDTGKGFSARDAERLMQRFSQLGQNGSQQHAGSGLGLFLSKQLVEMHGGK 1419

Query: 647  LTVTSKVHCGSTFTFIL 663
            LT +SK   G+ F+F +
Sbjct: 1420 LTPSSKEGQGAKFSFYV 1436


>gi|451965544|ref|ZP_21918802.1| colanic acid biosynthesis two-component histidine kinase RcsC
           [Edwardsiella tarda NBRC 105688]
 gi|451315664|dbj|GAC64164.1| colanic acid biosynthesis two-component histidine kinase RcsC
           [Edwardsiella tarda NBRC 105688]
          Length = 959

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/134 (45%), Positives = 91/134 (67%), Gaps = 1/134 (0%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LAT+SHE+R+PL G++   ++L    L  E ++LLG M +S  L+L++INDILD SK+E
Sbjct: 475 FLATVSHELRTPLYGIIGNLDLLRTKTLPEEVQRLLGAMSNSSGLLLKIINDILDFSKIE 534

Query: 433 SGVMKLEAAKFRPREVVKHVL-QTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           S  +K+E  +F  REV+ H++       ++K L L   I  DVP E+ GD++RI+Q+L+N
Sbjct: 535 SEQLKIEPGRFVAREVIPHIIGNYLPLVVRKRLTLYCFIEPDVPAEISGDIMRIQQVLSN 594

Query: 492 LISNAIKFTPEGKV 505
           L+SNAIKFT  G +
Sbjct: 595 LLSNAIKFTDTGCI 608



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 27/140 (19%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            IL+V+D+ IN  +    +  LG + + V  +GV+A+  +Q Q  D++L DV MP MDG +
Sbjct: 832  ILIVDDHPINRRLLADQLNSLGFTQVSVACDGVDALGMLQQQPADIVLTDVNMPNMDGYQ 891

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
             T  +R            + G  Q              PI+ +TANAL+E  + C   GM
Sbjct: 892  LTARLR------------QQGRTQ--------------PIVGVTANALAEERQRCIEVGM 925

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            DS +SKPV  + L   L  Y
Sbjct: 926  DSCLSKPVMREDLLASLSGY 945


>gi|392544981|ref|ZP_10292118.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas rubra ATCC
           29570]
          Length = 1333

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 150/289 (51%), Gaps = 24/289 (8%)

Query: 227 VLQNAPVVMGHQDKELRY---RFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREV 283
           +L   P  M +++ E +Y     ++N +    + D+L  T  +IF     +  +   +++
Sbjct: 478 ILDAIPSPMYYKNSEGQYLGVNSVFNQYFGTFDADVLDATAEDIFDYEIAQVFEQSHQDL 537

Query: 284 LEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETI-GVNYMGMDVTDQVRKREKMAK 342
           +++      EIT E      + F++Y E +F+ +   + GV  + +DVT++         
Sbjct: 538 IDRESNHHYEITIENAEGDPRNFIVY-EALFTNAENRLAGVVGLLLDVTER--------- 587

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
                   K  E EL +     +E   AK + LA MSHEIR+P+  ++ M+ +   T L 
Sbjct: 588 --------KQMEQELRQAKDKADEMSTAKGEFLANMSHEIRTPMNAIIGMSHLALRTDLT 639

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            +Q   +  +  +   +L +INDILD SK+ESG +++E   F  +EV+ +V+      +Q
Sbjct: 640 PQQMGYINKIDQAAKSLLGIINDILDFSKIESGKLEIEHIDFSLQEVLDNVVNINVIRVQ 699

Query: 462 -KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            K L +  DIA DVPI ++GD LR+ QIL NL  NAIKFT +G++ I +
Sbjct: 700 EKGLEMLLDIAPDVPISLVGDPLRLGQILINLCGNAIKFTEQGEITISV 748



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 24/136 (17%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            +LLVEDN  N  +AK M+  L   + +  NG  AV  ++ Q +D++LMD+ MPVMDG  A
Sbjct: 997  VLLVEDNSTNQEIAKEMLSSLNLQVSIAENGQVAVEMIKAQAFDIVLMDIQMPVMDGYSA 1056

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T+ IR                          + F  +PIIAMTAN + E  ++C + GM+
Sbjct: 1057 TKYIRKL------------------------SQFNALPIIAMTANVMKEDLQKCQSAGMN 1092

Query: 982  SFVSKPVTFQKLKECL 997
              + KP+ F ++ E +
Sbjct: 1093 GHIGKPINFNQMAETI 1108



 Score = 45.1 bits (105), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 842 QSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
           QS   ++   P+++   K + L+V+DN+    +  +++K +   +    +G  AV   Q 
Sbjct: 836 QSAKLTNVICPDSQLAGK-QALVVDDNESARAILTNLLKAMKFQVTCSASGSGAVELAQA 894

Query: 902 QNYDLILMDVCMPVMDGLKATRLIRSFE 929
             YD+I MD  MP M G+ A + IR+ E
Sbjct: 895 GGYDIIFMDWKMPHMSGIDAIKHIRALE 922


>gi|315645559|ref|ZP_07898683.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315279037|gb|EFU42347.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 639

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 95/147 (64%), Gaps = 2/147 (1%)

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           E+T +AK + LA MSHEIR+P+ GV+ M +++  T+LD EQR  + ++  SG  +L +IN
Sbjct: 259 EKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETELDEEQRDYVQIIKKSGTTLLNIIN 318

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDV 482
           DILD SK+ESG  +L    F  R  +   +      +L+K + +   +A +VP +V GDV
Sbjct: 319 DILDFSKIESGRTELVEETFSLRIALSETMNMILPKALEKNIEVTTSVASEVPDQVHGDV 378

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKL 509
            ++RQ+L NL+SNAIKFTP G V I +
Sbjct: 379 TKLRQVLMNLLSNAIKFTPNGAVSISV 405



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 25/142 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN++N +V K M+++LG++   V NG+EAV A +   YD++ MD+ MP MDG+ 
Sbjct: 517  RILIAEDNEVNQLVLKKMLEKLGYNSTTVQNGLEAVEAFKRHPYDIVFMDIQMPFMDGMD 576

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            A +                     A+  S SS   +R P I+A+TA+A+    E     G
Sbjct: 577  AVK---------------------AIKESISS---ERDPYIVAVTAHAIKGDRERYLEMG 612

Query: 980  MDSFVSKPVTFQKLKECLEQYF 1001
            MD +VSKPV+   +   ++++ 
Sbjct: 613  MDEYVSKPVSMHMISGIIDKFL 634



 Score = 70.1 bits (170), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I+  V DTGIG+PE  +  LF  + QV     RK  GTGLGLAICK+LV+LMGG +    
Sbjct: 417 IQFSVVDTGIGVPEEKVAHLFEPFYQVDHYMTRKVEGTGLGLAICKKLVKLMGGDIWYER 476

Query: 652 KVH-CGSTFTFILPY 665
            ++  GS F F + +
Sbjct: 477 NLNGSGSVFAFTVDF 491


>gi|239904801|ref|YP_002951539.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794664|dbj|BAH73653.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1027

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 114/189 (60%), Gaps = 7/189 (3%)

Query: 330 VTDQVRKREKM-AKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTG 387
           + D  ++R K  A+L  E+  +   E +L K  H+ E   RAK + LA MSHEIR+PL G
Sbjct: 608 IIDTAKQRLKTTARLIGEMVSRSMVEQDLQKATHLAETANRAKSEFLANMSHEIRTPLNG 667

Query: 388 VVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF---R 444
           V+ M ++L  T    EQ++ L   ISS   + +L++DILD+S++E+G M++   +F   +
Sbjct: 668 VLGMLQLLETTDQTDEQKEYLFGAISSTKRLTRLLSDILDISRIEAGRMEIVEVEFNIKK 727

Query: 445 PREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK 504
            R+ +K +    A    K L LE    +D+P+ ++GD  R+RQIL NL+ NAIKFT +G+
Sbjct: 728 TRDSIKELFNPEAKG--KGLRLEFGRDEDLPLVLVGDEARLRQILFNLVGNAIKFTEKGE 785

Query: 505 VGIKLYVVP 513
           + I   ++P
Sbjct: 786 IRIDASLLP 794



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 24/155 (15%)

Query: 848  SAEVPETKPKP---KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
            S E+    P P     +IL+ ED+ I+++ AK M+++ G+S+    NG EA+  +  +++
Sbjct: 885  SVEIASDDPSPVHVSSRILVAEDDTISLITAKRMLEKSGYSVSAAKNGQEALQRLTEESF 944

Query: 905  DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
            DLILMDV MP+MDG++AT+ IR   + G                + SS     +PI+AMT
Sbjct: 945  DLILMDVQMPIMDGVEATKAIRGASNLG----------------AKSS-----VPIVAMT 983

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            A A++   E   A GMD ++SKPV    L E +E+
Sbjct: 984  AYAMTGDKETFLAAGMDDYISKPVDKAALAEVIER 1018



 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 5/87 (5%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIPE  L  +F  ++Q  A + R++ G GLGL+I ++LV+LMGG +++ S V  
Sbjct: 807 VRDTGIGIPEEHLKGIFEPFVQAEASYTRRFQGAGLGLSIVRRLVKLMGGDISIDSTVGE 866

Query: 656 GSTFTFILPYQVSPIEEN-----SDDP 677
           G+T    LP+++   E+      SDDP
Sbjct: 867 GTTVYLSLPFKLPKTEQKSVEIASDDP 893


>gi|66046171|ref|YP_236012.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63256878|gb|AAY37974.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 1353

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 142/289 (49%), Gaps = 46/289 (15%)

Query: 246 FIYNHFPSLHEEDILGKTDVEIFSGAG----------VKESQDFKRE--VLEKGLPA--- 290
           F++N    L    +LG ++ E+ SG G             S +  RE   L +G+     
Sbjct: 515 FVFNRGAEL----LLGYSNSEMLSGNGPGVFHLPEEVAARSAELSREYGTLIEGIDVFCY 570

Query: 291 --------KREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAK 342
                    R+ T+  +   +   L+ + P+ +  GE IG   +  D+T+++        
Sbjct: 571 KASREGSETRQWTYVRKDGTTVPVLMIITPIRTADGELIGHLGIAQDITERLHH------ 624

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLD 401
                        EL+      E    AK + LA MSHEIR+P+  V+ ++ +L NT L+
Sbjct: 625 -----------SAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTALN 673

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            +QRQLL  +  +G  +L +INDILD++K+E+G M+LE   F PR+++  + +      Q
Sbjct: 674 DQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQ 733

Query: 462 -KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            K L    ++   +P ++IGD LR+ QIL NL+ NA+KFT  G V + +
Sbjct: 734 EKGLRFSVNVVASLPGQLIGDALRVNQILMNLVGNALKFTSVGGVDVTV 782



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 54/88 (61%)

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
           S ++D   T  +R  V DTG GIP + L  LF  + Q  A   R++GGTGLGL++ + L 
Sbjct: 783 SREDDHADTCCLRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLA 842

Query: 641 ELMGGRLTVTSKVHCGSTFTFILPYQVS 668
           E MGGR+ V S++  GS F   LP+Q+S
Sbjct: 843 EQMGGRIGVESELGTGSEFWVELPFQIS 870



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 26/126 (20%)

Query: 865  VEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN--YDLILMDVCMPVMDGLKAT 922
            V+D++IN+ VA  +++Q G  +   +NG+ A+  ++     +D +LMDV MP MDG +AT
Sbjct: 1028 VDDSEINLEVASLLLQQQGAVVQTCSNGLLALERLRQTPDFFDAVLMDVQMPEMDGYEAT 1087

Query: 923  RLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDS 982
            R +RS           E G+              R+P++A+TA AL+E   +    GMD 
Sbjct: 1088 RRLRS-----------ELGL-------------TRLPVLALTAGALAEERRQAELAGMDD 1123

Query: 983  FVSKPV 988
            F++KP+
Sbjct: 1124 FLTKPL 1129


>gi|254457181|ref|ZP_05070609.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
 gi|373867992|ref|ZP_09604390.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
 gi|207085973|gb|EDZ63257.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
 gi|372470093|gb|EHP30297.1| multi-sensor hybrid histidine kinase [Sulfurimonas gotlandica GD1]
          Length = 1127

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 105/171 (61%), Gaps = 8/171 (4%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           +R +I  +KA E EL +   I EE+++AK + LATMSHEIR+P+ GV+ M  +L NTKLD
Sbjct: 524 IRTDITDKKAAELELIEANEIAEESVKAKSEFLATMSHEIRTPMNGVIGMLGLLMNTKLD 583

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
             QR+   +   S   +L LINDILD SK+E+  M+L+   F  R+ ++    T A   Q
Sbjct: 584 ETQRRQASLAEGSAKALLTLINDILDFSKLEAEKMELDNIDFNLRDELETFRDTIAIKAQ 643

Query: 462 ----KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
               ++++   DI  D+   +  D+ RIRQIL N++ NA+KFT +G V IK
Sbjct: 644 EKGIEVILDTSDIKTDI---INADLGRIRQILFNIVGNAVKFTSKGHVLIK 691



 Score = 97.8 bits (242), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 26/167 (15%)

Query: 840  ISQSPSSSSAEVP---ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
            +  S SSS  + P     +     K+LLVEDN+ N +VA+ ++   G + DV NNG+EA+
Sbjct: 777  VKLSKSSSLVKTPIADNIEFDKNTKVLLVEDNQTNQIVAQGILNSFGLNADVANNGIEAL 836

Query: 897  HAVQ--CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
              ++   + YD++LMD  MP +DG   TR IR           A+AG             
Sbjct: 837  ELLKDSAKKYDVVLMDCQMPELDGYDTTRAIRD----------AKAG-----------KA 875

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            +  IPIIAMTANA++   E+C   GMD ++SKP+  + L+  L ++ 
Sbjct: 876  YISIPIIAMTANAMAGDKEKCSIAGMDDYLSKPLDPELLRSTLAKWL 922



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 62/106 (58%), Gaps = 8/106 (7%)

Query: 598 DTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGS 657
           DTGIGIP + L  LF  + QV A   RKYGGTGLGLAI ++L  LMGG++ V S +  GS
Sbjct: 710 DTGIGIPNDKLDRLFESFSQVDASTTRKYGGTGLGLAIVQKLCSLMGGKIDVKSDLGHGS 769

Query: 658 TFTFILPYQVS--------PIEENSDDPDDLSDMADQDSVTDDVTA 695
           TFT  +  ++S        PI +N +   +   +  +D+ T+ + A
Sbjct: 770 TFTVDIGVKLSKSSSLVKTPIADNIEFDKNTKVLLVEDNQTNQIVA 815


>gi|387813408|ref|YP_005428890.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Marinobacter hydrocarbonoclasticus ATCC
           49840]
 gi|381338420|emb|CCG94467.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Marinobacter hydrocarbonoclasticus ATCC
           49840]
          Length = 984

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           LRE +   + +  EL+       E  R K + LA MSHEIR+PL G++   E+L  + L 
Sbjct: 292 LRETLETIEIQNIELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLP 351

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL-QTAAASL 460
           R+QR  L  +  S +++L +INDILD SK+E+G + L+   F+ R++V+ V+   A A+ 
Sbjct: 352 RQQRDHLNTIRKSSEILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAH 411

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            K L L   + +DVP  ++GD LR++Q++TNL++NAIKFT  G+V ++
Sbjct: 412 AKNLDLVPLVYNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTGEVVLR 459



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 573 GTPVSHGNSMDEDLEAT-VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGL 631
           G  V   +  DED E   V +R  + D+G+G+      +LF  + Q  A  AR+YGGTGL
Sbjct: 454 GEVVLRASLEDEDTEHNRVTLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQYGGTGL 513

Query: 632 GLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENS 674
           GLAI K+LVE MGG++ + S++  GSTF F L  ++S   ++S
Sbjct: 514 GLAISKRLVEEMGGKIGLESELGKGSTFWFTLTPELSSTGDSS 556



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 23/141 (16%)

Query: 860  PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
            P+IL V+DN+ N+ +  +++       +  ++G EA+  V+ + +DL+ MD+ MP MDG+
Sbjct: 711  PRILAVDDNEANLKLVMTLLNDCRLEAEGASSGFEALTKVRQKAFDLVFMDLQMPGMDGV 770

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            + T  IR   D+G                   S+H    PIIA+TA+AL++  E     G
Sbjct: 771  ETTARIRDL-DSG-------------------SHH---TPIIALTAHALADEQERLAQQG 807

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
             D ++ KP++  +L E + +Y
Sbjct: 808  FDGYMPKPISSSQLVELIREY 828


>gi|443311633|ref|ZP_21041259.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
 gi|442778362|gb|ELR88629.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
          Length = 1049

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 120/206 (58%), Gaps = 12/206 (5%)

Query: 302 GSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTI 361
           G K  ++ V    +++G+  G  ++  D+++Q     ++A +    A++KAK        
Sbjct: 353 GEKPKVLSVSSTSTRTGDVPGRLWLFDDISEQYFG--QLALIASTKALEKAKVA------ 404

Query: 362 HITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQ 420
              E   R K Q LA MSHEIR+P+  +V + +IL   +L  +Q+  +  + SS D +L 
Sbjct: 405 --AESATRLKSQFLANMSHEIRTPMNAIVGLTDILLTMQLTPQQQDFVNTIQSSSDTLLM 462

Query: 421 LINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVI 479
           LINDILDLSK+ESG ++LE   F  R+ V+  L   A  + +K + L   IA +VP  ++
Sbjct: 463 LINDILDLSKIESGKLELEQYSFNLRDFVEESLDLLAFKAAEKNIELAYLIAPEVPNLLV 522

Query: 480 GDVLRIRQILTNLISNAIKFTPEGKV 505
            DV+R+RQIL NL+SNA+KFT  G+V
Sbjct: 523 ADVIRLRQILVNLLSNAVKFTSTGEV 548



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 76/138 (55%), Gaps = 25/138 (18%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           ILL EDN +N  VA  +++QLG++ DV  +G+E + A+  Q+YD+ILMDV MP MDGL A
Sbjct: 809 ILLAEDNIVNQKVALHLLQQLGYAADVAKDGLEVLAALNHQHYDVILMDVQMPKMDGLAA 868

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
           TR I                          ++H  R  IIAMTANA+    EEC   GMD
Sbjct: 869 TRQI-------------------------IASHRVRPRIIAMTANAMQGDREECLNAGMD 903

Query: 982 SFVSKPVTFQKLKECLEQ 999
            ++SKP+   +L   L +
Sbjct: 904 DYLSKPIRLDQLAAALSK 921



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 65/116 (56%), Gaps = 10/116 (8%)

Query: 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
           N++D   E     +  V DTG+GIP      LF+ + QV +   R+YGGTGLGLAI KQL
Sbjct: 563 NTIDTHYE----FKFAVKDTGVGIPLERQHRLFKSFSQVDSSTTRQYGGTGLGLAIGKQL 618

Query: 640 VELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSD---DPDDLSDMADQDSVTDD 692
            E MGG++   S+ +CGSTF F +   ++P   NS    + D+L     +  + DD
Sbjct: 619 SEKMGGQMWCESQANCGSTFYFTI---IAPAAANSQILVEQDELQLQGKKVLIVDD 671



 Score = 43.1 bits (100), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           K+L+V+DN  N  +     +  G     V +G EA+  +Q Q++DL ++D+ MP MDGL 
Sbjct: 665 KVLIVDDNGTNRQILILQTQFWGMMPQAVESGNEALKLLQKQSFDLAILDMQMPHMDGLT 724

Query: 921 ATRLIRSFEDTGN 933
               I  +  T N
Sbjct: 725 LAIKIHEYLPTKN 737


>gi|403380249|ref|ZP_10922306.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JC66]
          Length = 669

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 10/186 (5%)

Query: 321 IGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSH 379
           IG  ++GMD           A    +I+ +K  E EL +     E   R K   LATMSH
Sbjct: 257 IGEAFIGMD--------HLFACTVSDISERKKAEQELVRAKEAAEIASRVKSDFLATMSH 308

Query: 380 EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
           EIR+PL GV+ M ++L  T+L+ EQ++L  ++ +SGD +L +INDILD SK+ESG M+LE
Sbjct: 309 EIRTPLNGVIGMTDLLLQTELNPEQKELAEIIRTSGDALLAVINDILDFSKIESGKMELE 368

Query: 440 AAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKF 499
              F     +        A  ++ L ++  I   +P  ++GD+ R+RQIL NLI NAIKF
Sbjct: 369 EEPFSLVGCISETFDLFTAQ-KRDLEMKYYIDPQLPAYLLGDITRLRQILINLIGNAIKF 427

Query: 500 TPEGKV 505
           T  G V
Sbjct: 428 TNTGGV 433



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 44/68 (64%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI E     LF+ + Q+ +  +RKYGGTGLGLAICK LVELM G + +      
Sbjct: 453 VKDTGIGIAEAKREQLFKPFSQLDSSMSRKYGGTGLGLAICKTLVELMEGSIELVDTEES 512

Query: 656 GSTFTFIL 663
           G+TF F +
Sbjct: 513 GATFRFTI 520



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 29/142 (20%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILLV+D+  N++  ++++ +  +++   N+G EA+  +   ++ +I+MDV MP MDG + 
Sbjct: 9    ILLVDDHPENLLALEAVLSEENYNLVRANSGEEALRCLLKDDFAVIVMDVQMPGMDGFET 68

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN--- 978
             R I++ E T                        K IPII +TA   S+ AE  F     
Sbjct: 69   ARFIKARERT------------------------KDIPIIFITAT--SKEAEHYFTGYSV 102

Query: 979  GMDSFVSKPVTFQKLKECLEQY 1000
            G   ++ KP   Q LK  +E +
Sbjct: 103  GAIDYMVKPFVPQTLKSKIEGF 124


>gi|120555156|ref|YP_959507.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120325005|gb|ABM19320.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 956

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           LRE +   + +  EL+       E  R K + LA MSHEIR+PL G++   E+L  + L 
Sbjct: 264 LRETLETIEIQNIELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLP 323

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL-QTAAASL 460
           R+QR  L  +  S +++L +INDILD SK+E+G + L+   F+ R++V+ V+   A A+ 
Sbjct: 324 RQQRDHLNTIRKSSEILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAH 383

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            K L L   + +DVP  ++GD LR++Q++TNL++NAIKFT  G+V ++
Sbjct: 384 AKNLDLVPLVYNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTGEVVLR 431



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 573 GTPVSHGNSMDEDLEAT-VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGL 631
           G  V   +  DED E   V +R  + D+G+G+      +LF  + Q  A  AR+YGGTGL
Sbjct: 426 GEVVLRASLEDEDTEHNRVTLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQYGGTGL 485

Query: 632 GLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENS 674
           GLAI K+LVE MGG++ + S++  GSTF F L  ++S   ++S
Sbjct: 486 GLAISKRLVEEMGGKIGLESELGKGSTFWFTLTPELSSTGDSS 528



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 23/141 (16%)

Query: 860  PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
            P+IL V+DN+ N+ +  +++       +  ++G EA+  V+ + +DL+ MD+ MP MDG+
Sbjct: 683  PRILAVDDNEANLKLVMTLLNDCRLEAEGASSGFEALTKVRQKAFDLVFMDLQMPGMDGV 742

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            + T  IR   D+G                   S+H    PIIA+TA+AL++  E     G
Sbjct: 743  ETTARIRDL-DSG-------------------SHH---TPIIALTAHALADEQERLAQQG 779

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
             D ++ KP++  +L E + +Y
Sbjct: 780  FDGYMPKPISSSQLVELIREY 800


>gi|294637120|ref|ZP_06715431.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685]
 gi|291089691|gb|EFE22252.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685]
          Length = 999

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/134 (45%), Positives = 91/134 (67%), Gaps = 1/134 (0%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LAT+SHE+R+PL G++   ++L    L  E ++LLG M +S  L+L++INDILD SK+E
Sbjct: 515 FLATVSHELRTPLYGIIGNLDLLRTKTLPEEVQRLLGAMSNSSGLLLKIINDILDFSKIE 574

Query: 433 SGVMKLEAAKFRPREVVKHVL-QTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           S  +K+E  +F  REV+ H++       ++K L L   I  DVP E+ GD++RI+Q+L+N
Sbjct: 575 SEQLKIEPGRFVAREVIPHIIGNYLPLVVRKRLTLYCFIEPDVPAEISGDIMRIQQVLSN 634

Query: 492 LISNAIKFTPEGKV 505
           L+SNAIKFT  G +
Sbjct: 635 LLSNAIKFTDTGCI 648



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 27/140 (19%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            IL+V+D+ IN  +    +  LG + + V  +GV+A+  +Q Q  D++L DV MP MDG +
Sbjct: 872  ILIVDDHPINRRLLADQLNSLGFTQVSVACDGVDALGMLQQQPADIVLTDVNMPNMDGYQ 931

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
             T  +R            + G  Q              PI+ +TANAL+E  + C   GM
Sbjct: 932  LTARLR------------QQGRTQ--------------PIVGVTANALAEERQRCIEVGM 965

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            DS +SKPV  + L   L  Y
Sbjct: 966  DSCLSKPVMREDLLASLSGY 985


>gi|239905593|ref|YP_002952332.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795457|dbj|BAH74446.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1248

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 153/309 (49%), Gaps = 8/309 (2%)

Query: 211 EELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVEI 267
           +E  Q L R       +L   P  + +Q  E  Y  +   +  F  + E+ +  K   E+
Sbjct: 435 KESEQALAREAEDRRILLDTIPTQVWYQPDEYSYGVVNKAHASFVGIQEDQLAFKKLSEV 494

Query: 268 FSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMG 327
           +    V        EV   G     E         ++  LI   P   ++G    + +  
Sbjct: 495 YPPDVVSVCIQSSSEVFRNGKTIVTEEWVPNASGEARLLLITKSPKKRENGTVEYIVFAA 554

Query: 328 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLT 386
            D+T+Q R  + +A     + +      +LN  +   +E  +AK   LA MSHEIR+P+ 
Sbjct: 555 EDITEQRRSVDSLADYANRMELTN---KQLNIALARADEAAKAKGDFLANMSHEIRTPMN 611

Query: 387 GVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446
           GV+ MA +L +T L  EQ++    + SSG+L+L L+NDILD SK+E+G ++LE   F   
Sbjct: 612 GVIGMAGLLLDTSLTDEQQRFAETIRSSGELLLLLVNDILDFSKIEAGKLELEIVDFDLV 671

Query: 447 EVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           +++  V+ + A  S  K L L       VP ++ GD  R+RQIL+NL+ NAIKFT +G+V
Sbjct: 672 QILDDVMDSMAVGSHSKGLELLCATDPSVPYQLQGDPARLRQILSNLVGNAIKFTVQGQV 731

Query: 506 GIKLYVVPE 514
            +++ +V E
Sbjct: 732 SVRVSIVNE 740



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/143 (43%), Positives = 83/143 (58%), Gaps = 23/143 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL EDN  N  VAK ++ + G ++DVV+NG+EAV A++ + YDL+LMD+ MP +DG+ 
Sbjct: 990  RILLAEDNITNQQVAKGILNKFGLNVDVVSNGLEAVVALESEAYDLVLMDMHMPTLDGVA 1049

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR-IPIIAMTANALSESAEECFANG 979
            ATR I                        GSS    R IPIIAMTAN L    E+CFA G
Sbjct: 1050 ATRRIL----------------------DGSSKVINRNIPIIAMTANVLEADREKCFAAG 1087

Query: 980  MDSFVSKPVTFQKLKECLEQYFP 1002
            M  +VSKPV  Q L + + ++ P
Sbjct: 1088 MVDYVSKPVVPQVLADKIAKWLP 1110


>gi|399072068|ref|ZP_10750162.1| signal transduction histidine kinase [Caulobacter sp. AP07]
 gi|398042839|gb|EJL35799.1| signal transduction histidine kinase [Caulobacter sp. AP07]
          Length = 574

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 98/150 (65%), Gaps = 6/150 (4%)

Query: 369 RAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           RAK   LA MSHE+R+P+ GV+ MA  L++T+LDR Q   L  +I SGD ++ ++NDILD
Sbjct: 198 RAKSAFLAMMSHELRTPMNGVMGMAHALASTRLDRRQTDYLDTIIQSGDGLMAILNDILD 257

Query: 428 LSKVESGVMKLEAAKFRPREVVK--HVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           LSK+E+G ++LE   F   E+ +  H L T  A  + + ++   IA   P  + GD +R+
Sbjct: 258 LSKIEAGKLELEVVSFDVAELGRQLHNLWTETARAKDVALVL-QIAPGTPAWLAGDPMRV 316

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
           RQIL NL+SNA+KFT +G  G+++ + P P
Sbjct: 317 RQILLNLVSNAVKFTLDG--GVRVAIGPGP 344



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 27/139 (19%)

Query: 854 TKPKPKP----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909
           + P+P      +IL+V+DN++N  VA+++++ +G  + V ++G++ +  +    +DL+LM
Sbjct: 432 SSPRPAGLEGRRILVVDDNQVNQTVARALLEAVGAEVVVADDGLQGLARLATDPFDLVLM 491

Query: 910 DVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALS 969
           DV MP MDG++A   IR+                Q  P+         IP+IA+TA+ +S
Sbjct: 492 DVHMPTMDGIEALARIRA---------------GQGGPAD--------IPVIALTADGMS 528

Query: 970 ESAEECFANGMDSFVSKPV 988
             AE     G D   SKP+
Sbjct: 529 GEAERLMTLGFDGVQSKPI 547



 Score = 70.1 bits (170), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIG+       LF+ + Q      R++GG+GLGL+IC  LV LMGGR++VTS+   
Sbjct: 352 VADTGIGMSAEQQTRLFQPFSQGEVSTTRRFGGSGLGLSICHHLVTLMGGRISVTSRPDA 411

Query: 656 GSTFT 660
           GSTFT
Sbjct: 412 GSTFT 416


>gi|212710083|ref|ZP_03318211.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM
           30120]
 gi|212687290|gb|EEB46818.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM
           30120]
          Length = 1042

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 113/196 (57%), Gaps = 5/196 (2%)

Query: 316 KSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QML 374
           KSGE   V Y+ +      ++R  +     +I +Q   E +LN    + EE  +AK   L
Sbjct: 424 KSGE--HVLYI-VSTATHYQQRPVILCAFTDITIQAETEKQLNHAKRLAEEANQAKSNFL 480

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           ATMSHEIR+PL G++   E+L NT L  +Q+  +  M ++  L++ LI DILD+SK+E+ 
Sbjct: 481 ATMSHEIRTPLYGIIGTLELLENTALSPKQKHFIDRMSTTSQLLMHLIGDILDISKIEAN 540

Query: 435 VMKLEAAKFRPREVVKHVLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493
            + ++   F   ++++H +Q     + QK L+L   I  ++    IGD  R++QI  NL+
Sbjct: 541 QIHIQHISFDLLDLIQHTVQLYQGLAQQKKLLLFAIIDPNIYAVRIGDAARLQQIFGNLL 600

Query: 494 SNAIKFTPEGKVGIKL 509
           SNAIKFT  GKV ++L
Sbjct: 601 SNAIKFTHNGKVTVEL 616



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 26/153 (16%)

Query: 850  EVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909
            + P    +   ++L+ EDN IN +  +  ++ LG  + + ++G EA+     Q  D+IL 
Sbjct: 807  QTPSYANEYSLRVLVAEDNPINQVTLQEQLELLGCEVFMASDGEEALVVWDNQVVDIILT 866

Query: 910  DVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALS 969
            DV MP  DG + T+ +RS  +T                           PII +TAN L 
Sbjct: 867  DVNMPYRDGYELTKQLRSEGET--------------------------CPIIGVTANGLK 900

Query: 970  ESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            +  E C A GMD+++ KP+  + L +   ++FP
Sbjct: 901  DEEERCLAAGMDTWLVKPIELETLVKLFNRFFP 933


>gi|384485405|gb|EIE77585.1| hypothetical protein RO3G_02289 [Rhizopus delemar RA 99-880]
          Length = 2007

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 128/220 (58%), Gaps = 27/220 (12%)

Query: 320  TIGVNYMGMDVTDQVRKREKMAKLREE------IAVQKAKE-----TELNKTIHITEETM 368
            T  VN M  ++T QVR   +++    E      I V+ + E     T++N+ ++   + +
Sbjct: 1415 TSNVNTMASNLTTQVRAFAQISAAATENDFSRLITVEASGEMDSLKTKINQMVNSLRDAI 1474

Query: 369  --------------RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMIS 413
                          R+K + LA MSHEIR+P+ G++ M  +   T+L+R+QR+ L ++ S
Sbjct: 1475 QKNRSAREAAELANRSKSEFLANMSHEIRTPMNGIIGMTSLTLETELNRQQRENLMIVSS 1534

Query: 414  SGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIAD 472
              + +L +I+DILD+SK+E+G M  E   F  R  +  VL+T A    QK L L  ++  
Sbjct: 1535 LANSLLSIIDDILDISKIEAGRMTFETIPFSLRSAIFSVLKTLAVKANQKKLDLIYNVDC 1594

Query: 473  DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
             +P +++GD LR+RQ++TNLI NAIKFT +G+V +++++V
Sbjct: 1595 AIPDQLVGDPLRLRQVITNLIGNAIKFTTKGEVSLEVHIV 1634



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 21/157 (13%)

Query: 847  SSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYD 905
            S A  P     P P  ILL EDN +N  +A  ++++ GH +++V+NG  AV A + +NYD
Sbjct: 1851 SHAAAPNDSSIPMPLDILLAEDNIVNQKLAVRILEKFGHKVEIVSNGKMAVEAFENRNYD 1910

Query: 906  LILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965
            +ILMDV MP+M G +AT+ IR  E+                     S    R+PIIA+TA
Sbjct: 1911 MILMDVQMPIMGGFEATQKIREIENI--------------------SGCHTRVPIIALTA 1950

Query: 966  NALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            +A+    E+C  +GMD +V+KP+ F +L   ++++ P
Sbjct: 1951 HAMIGDREKCLQSGMDEYVTKPLRFPELIAAIKKFAP 1987



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 43/71 (60%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGI E  L  +F  + Q      R+YGGTGLGL+I K LV+LMGG L V S    
Sbjct: 1647 VKDTGIGIQEEKLNLIFETFCQADGSTTREYGGTGLGLSISKSLVKLMGGDLWVKSTYGK 1706

Query: 656  GSTFTFILPYQ 666
            GS F F L ++
Sbjct: 1707 GSQFYFTLNFK 1717


>gi|429848625|gb|ELA24086.1| histidine kinase hhk2p [Colletotrichum gloeosporioides Nara gc5]
          Length = 2062

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 94/143 (65%), Gaps = 2/143 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + +L +IN
Sbjct: 1394 KEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTTLNEEQRDYTNTIQTSANSLLMIIN 1453

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSKV++G+MKL+   F  R +++ V +  +  ++ K L L   + +DVP  V GD 
Sbjct: 1454 DILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIVEEDVPAWVKGDK 1513

Query: 483  LRIRQILTNLISNAIKFTPEGKV 505
            +RIRQ+L N+I NAIKFT EG+V
Sbjct: 1514 VRIRQVLLNVIGNAIKFTAEGEV 1536



 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 24/144 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMPVMD 917
            K+LLVEDN +N  V K  +K++G  ++VV +G E    V  ++   + LIL D+ MP  D
Sbjct: 1940 KVLLVEDNPVNQKVLKKYLKKVGVEVEVVADGAECTETVFSRSHSYFSLILCDLHMPRKD 1999

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +A R IR +E         E G             FK +PIIA++AN +S+  ++C A
Sbjct: 2000 GYQACREIRQWEK--------ERG-------------FKTLPIIALSANVMSDVQDKCVA 2038

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             G   +V+KPV F  L   + ++F
Sbjct: 2039 AGFSDYVTKPVDFIDLSRAMSKFF 2062



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 19/118 (16%)

Query: 579  GNSMDEDLEATVWIRCDVY-------------------DTGIGIPENALPTLFRKYMQVS 619
            GN++    E  V+ RC ++                   DTG G  +     +F+ + Q+ 
Sbjct: 1525 GNAIKFTAEGEVFSRCRIFTNTKSAPANDEIMLEFAVIDTGRGFTKEEADLIFKPFSQID 1584

Query: 620  ADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
                R++GG+GLGL I +QLVEL GG++  T+    GSTFTF   + +    ++ D P
Sbjct: 1585 GSSTRQHGGSGLGLVISRQLVELHGGKMEGTAVPGKGSTFTFTAKFALPTSVDHPDGP 1642


>gi|288962258|ref|YP_003452553.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288914524|dbj|BAI76009.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1135

 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 107/178 (60%), Gaps = 7/178 (3%)

Query: 336 KREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEI 394
           +R     LR+ + VQ+  E  L +     ++  RAK + LATMSHEIR+P+ GV+    +
Sbjct: 556 RRYVTGALRD-VTVQREIEASLRRAKEAADQANRAKGEFLATMSHEIRTPMNGVLGALAL 614

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK---H 451
           +    L+ EQRQLL V   SG+ +LQ+I+DILDLSK+E+G  ++E   F  R V++    
Sbjct: 615 VEGPNLNDEQRQLLDVANRSGNALLQIIDDILDLSKLEAGKAEVEPVDFELRAVLRDSID 674

Query: 452 VLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           +L+ AA    + L L  ++   VP  V  D+ RIRQ+L NL+ NA+KFT  G V +++
Sbjct: 675 LLEPAACG--RGLFLTQEVEPAVPDHVRADLRRIRQVLVNLVGNALKFTNRGGVAVRV 730



 Score = 96.7 bits (239), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 23/155 (14%)

Query: 843 SPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ 902
           +P  ++A  P  +P     +L+ EDN+IN  +  +M+ + GH +  V +G++AV   +  
Sbjct: 833 APEPAAAGRPVAEPAAGLHVLVAEDNEINRDIVVTMLCRAGHRVTAVEDGLQAVRLAEEG 892

Query: 903 NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
            +DL+LMDV MPVMDG+ ATR IR                  AMP    S     +PI+A
Sbjct: 893 GFDLVLMDVQMPVMDGVTATRHIR------------------AMPGKAGS-----LPIVA 929

Query: 963 MTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
           +T N +     E  A GM ++++KP+    L+E L
Sbjct: 930 LTGNVMPAHRAEYLAAGMTAYLTKPIVPADLREVL 964



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 58/97 (59%)

Query: 567 KHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKY 626
           K  +  G  V  G   D   + +  +R +V DTGIGIPE   PTLFR++ Q  +   R++
Sbjct: 719 KFTNRGGVAVRVGLEGDAVADGSFLLRFEVADTGIGIPEEVQPTLFRRFTQADSSTTRRF 778

Query: 627 GGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
           GGTGLGLAI ++LV LMGG + V S    GSTF F +
Sbjct: 779 GGTGLGLAISRELVTLMGGTIGVASAEGKGSTFWFTV 815


>gi|427702994|ref|YP_007046216.1| signal transduction histidine kinase [Cyanobium gracile PCC 6307]
 gi|427346162|gb|AFY28875.1| signal transduction histidine kinase [Cyanobium gracile PCC 6307]
          Length = 652

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 22/229 (9%)

Query: 298 TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT-DQVRKREKMAKLREEIA-VQKAKET 355
           T+ FG  TF+    P+  + G  +G  ++G+D++  Q+R++E   +    +  V  A  +
Sbjct: 172 TDHFG--TFMSGFAPIRDRDGALVG--FVGIDISLAQLRRKELPLQFTYLLGLVGSAGFS 227

Query: 356 ELNKTIHITEETMRAKQM-------------LATMSHEIRSPLTGVVSMAEILSNTKLDR 402
            L    H      RA+               LAT+SHEIR+PL GV+ M  ++  T+L  
Sbjct: 228 VLAANFHRRSLKARARAFQAMASAERAKSTFLATLSHEIRTPLNGVIGMTGLVLATELSP 287

Query: 403 EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQK 462
           +QR+ L ++ SSG+ +L L+N ILD +K+ESG ++LE A  R R +++  +  A ASL +
Sbjct: 288 QQRECLDIVHSSGESLLTLLNGILDFTKIESGHLELELAPCRLRPLLEETI-AACASLAR 346

Query: 463 ILMLEGDIA--DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           +  ++  +    ++P  ++ D +R+RQIL NLI NAIKFT  G V + L
Sbjct: 347 VKAIDLTLVMPPELPEAIVTDAIRLRQILLNLIGNAIKFTDAGSVAVSL 395



 Score = 67.0 bits (162), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 46/80 (57%)

Query: 588 ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
           AT+ +   V DTG+GI  + L  LF+ + Q+         GTGLGLAI +QLVE +GG +
Sbjct: 411 ATILLAFAVADTGVGIAADQLERLFQPFSQLGTSANTPKAGTGLGLAISRQLVEALGGTI 470

Query: 648 TVTSKVHCGSTFTFILPYQV 667
            V S    GS F F LP QV
Sbjct: 471 EVESAPGRGSVFRFRLPVQV 490



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 23/137 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +ILLV+D+ +N  + + M++ LG+  +   +G EA+   +    DLILMDV MP +DGL+
Sbjct: 525 RILLVDDSAVNRRLCELMLRSLGYEPESAVDGQEALERQRHLEPDLILMDVQMPRLDGLE 584

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR IRS                             R  I+A+TA   +E  E     GM
Sbjct: 585 ATRRIRS-----------------------CGGRADRPWIVALTAFTTAEDREAALQAGM 621

Query: 981 DSFVSKPVTFQKLKECL 997
           +  ++KP+  + L   L
Sbjct: 622 NDVLAKPLRSEALLASL 638


>gi|380478404|emb|CCF43618.1| hsp90-like protein [Colletotrichum higginsianum]
          Length = 1984

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 94/143 (65%), Gaps = 2/143 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + +L +IN
Sbjct: 1315 KEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTTLNEEQRDYTNTIQTSANSLLMIIN 1374

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSKV++G+MKL+   F  R +++ V +  +  ++ K L L   + +DVP  V GD 
Sbjct: 1375 DILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIVEEDVPAWVKGDK 1434

Query: 483  LRIRQILTNLISNAIKFTPEGKV 505
            +RIRQ+L N+I NAIKFT EG+V
Sbjct: 1435 VRIRQVLLNVIGNAIKFTAEGEV 1457



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 26/145 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYD---LILMDVCMPVMD 917
            K+LLVEDN +N  V +  +K++G  ++V  +G E    V  +++D   LIL D+ MP  D
Sbjct: 1862 KVLLVEDNPVNQKVLQKYLKKVGVDVEVAADGAECTDMVLARSHDYYSLILCDLHMPRKD 1921

Query: 918  GLKATRLIRSFE-DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            G +A R IR +E D G                       K +PIIA++AN +S+  ++C 
Sbjct: 1922 GYQACREIRQWERDKG----------------------LKTLPIIALSANVMSDVQDKCV 1959

Query: 977  ANGMDSFVSKPVTFQKLKECLEQYF 1001
            A G   +V+KPV F  L   + ++F
Sbjct: 1960 AAGFSDYVTKPVDFIDLSRAMSKFF 1984



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 19/118 (16%)

Query: 579  GNSMDEDLEATVWIRCDVY-------------------DTGIGIPENALPTLFRKYMQVS 619
            GN++    E  V+ RC VY                   DTG G  +     +F+ + Q+ 
Sbjct: 1446 GNAIKFTAEGEVFSRCRVYKGGKSDNDKKEIMLEFAIIDTGRGFTKEEADLIFKPFSQID 1505

Query: 620  ADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
                R++GG+GLGL I +QLVEL GG++  ++    GSTFTF   + +   E++ D P
Sbjct: 1506 GSSTRQHGGSGLGLVISRQLVELHGGKMEGSAIPGKGSTFTFTAKFALPTNEDHPDAP 1563


>gi|421089680|ref|ZP_15550484.1| 7TM diverse intracellular signaling [Leptospira kirschneri str.
           200802841]
 gi|410001504|gb|EKO52100.1| 7TM diverse intracellular signaling [Leptospira kirschneri str.
           200802841]
          Length = 820

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 151/337 (44%), Gaps = 73/337 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 402 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG 461

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G               K +L+  
Sbjct: 462 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAG---------------KVILERE 506

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK  I+ YV  +P
Sbjct: 507 VFSIRSVL-------DE-----------IHDLLFPLAKQKEIDFRLEGKSEIQEYVYGDP 548

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N   D                   
Sbjct: 549 ------LRLRQILWNLAGNGIKFTNRGEVVLKVAQKNISKDG------------------ 584

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
                         V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 585 --------------VSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 630

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEE 672
            KQL+EL GG L + S+   GS FTF + Y +  I E
Sbjct: 631 TKQLIELQGGVLKLESQEGEGSKFTFTIDYDIPSILE 667



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 693  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLETFDIILMDIHMPEVDGIE 752

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N   + P IIA+TA+A+  S E+  + G
Sbjct: 753  ATKWIR------------------------SKNQNSKFPIIIALTADAIESSREKYISKG 788

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 789  MNDCLTKPLDLPILKSTLDLW 809


>gi|359684109|ref|ZP_09254110.1| histidine kinase response regulator hybrid protein [Leptospira
           santarosai str. 2000030832]
          Length = 821

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 144/328 (43%), Gaps = 75/328 (22%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L++EI  ++  E EL +   I E+  + K   LA MSHEIR+P+ GV+ M ++L  TKL+
Sbjct: 409 LKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGTTKLN 468

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQ++ + ++  S   +LQ+INDILD SK+E+                            
Sbjct: 469 DEQKEYVKILSVSAKSLLQIINDILDFSKIEA---------------------------- 500

Query: 462 KILMLEGDIADDVPIEVIGDVL-RIRQILTNLISNA-IKFTPEGKVGIKLYVVPEPPFAK 519
                 G I+ D  +  I  VL  I  +L  L     I    EGK  I+ YV  +     
Sbjct: 501 ------GKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRLEGKFDIQEYVYGDQ---- 550

Query: 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHG 579
             L+ +   +    + +K   H     + S +N                       +S  
Sbjct: 551 --LRLRQILWNLTGNGIKFTNHGEVVLSVSQEN-----------------------ISKN 585

Query: 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
           N         + I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I KQL
Sbjct: 586 N---------ISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQL 636

Query: 640 VELMGGRLTVTSKVHCGSTFTFILPYQV 667
           VEL GG L + SK   GS FTF + Y +
Sbjct: 637 VELQGGTLNLESKEGFGSKFTFAITYDI 664



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 32/176 (18%)

Query: 825  NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
            +E +KI E ++  D  S   +++S  +         KIL+ EDN+ N ++ +  +K+LG+
Sbjct: 668  SEIEKILEAEKTKDLESAYSNATSNGM---------KILVAEDNETNCLLIERALKKLGY 718

Query: 885  SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQ 944
               VV NG E +  +Q   +DLILMD+ MP +DG++AT+ IRS +    +          
Sbjct: 719  DPVVVRNGREVIEKMQLDFFDLILMDIHMPEVDGIEATKWIRSQKQNAEFPI-------- 770

Query: 945  AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                           IIA+TA+ +  + E   + GM+  ++KP+    LK+ L+ +
Sbjct: 771  ---------------IIALTADVIESNKEIYISKGMNDCLTKPLDLPLLKKSLDFW 811


>gi|149374705|ref|ZP_01892479.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149361408|gb|EDM49858.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 962

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           LRE +   + +  EL+       E  R K + LA MSHEIR+PL G++   E+L  + L 
Sbjct: 264 LRETLETIEIQNIELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLP 323

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL-QTAAASL 460
           R+QR  L  +  S +++L +INDILD SK+E+G + L+   F+ R++V+ V+   A A+ 
Sbjct: 324 RQQRDHLSTIRKSSEILLTIINDILDFSKIEAGKLILDRIPFQLRDIVEEVMVMLAPAAH 383

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            K L L   + +DVP  ++GD LR++Q++TNL++NAIKFT  G+V ++
Sbjct: 384 SKNLDLVPLVYNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTGEVVLR 431



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 27/166 (16%)

Query: 838  DRISQSPSSS---SAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            +R  Q P  S   S E+P    +  P++L V+DN  N+ +  +++   G   +   +G E
Sbjct: 662  NRRRQLPDHSPTISRELPAQSTR-VPRVLAVDDNDANLKLVMTLLNDCGVVAEGATSGFE 720

Query: 895  AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
            A+   +  ++DL+ MD+ MP MDG++ T  +RS +                    G+S+ 
Sbjct: 721  ALSKARQHSFDLVFMDLQMPGMDGVETTERLRSLD--------------------GASH- 759

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
              R PIIA+TA+AL+E  +     G D +++KP++  +L + +  Y
Sbjct: 760  --RTPIIALTAHALAEEQDRLIQQGFDGYLAKPISNSQLIDIIHDY 803



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 60/99 (60%), Gaps = 1/99 (1%)

Query: 583 DEDLEAT-VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
           +ED E+  + +R  + D+G+G+      +LF  + Q  A  AR+YGGTGLGLAI K+LVE
Sbjct: 436 EEDKESNRITLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVE 495

Query: 642 LMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDL 680
            MGG++ + S++  GSTF F L  ++S   E     D L
Sbjct: 496 EMGGKIGLESELGKGSTFWFTLTSELSSTGEAIAPKDSL 534


>gi|358451271|ref|ZP_09161705.1| multi-sensor hybrid histidine kinase [Marinobacter manganoxydans
           MnI7-9]
 gi|357224504|gb|EHJ03035.1| multi-sensor hybrid histidine kinase [Marinobacter manganoxydans
           MnI7-9]
          Length = 957

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           LRE +   + +  EL+       E  R K + LA MSHEIR+PL G++   E+L  + L 
Sbjct: 264 LRETLETIEIQNIELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLP 323

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL-QTAAASL 460
           R+QR  L  +  S +++L +INDILD SK+E+G + L+   F+ R++V+ V+   A A+ 
Sbjct: 324 RQQRDHLSTIRKSSEILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAH 383

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            K L L   + +DVP  ++GD LR++Q++TNL++NAIKFT  G+V ++
Sbjct: 384 AKNLDLVPLVYNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTGEVVLR 431



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 182/417 (43%), Gaps = 67/417 (16%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            V +R  + D+G+G+      +LF  + Q  A  AR+YGGTGLGLAI K+LVE MGG++ +
Sbjct: 444  VTLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGL 503

Query: 650  TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLG--- 706
             S++  GSTF F L  +++   E          +A +D++  +     +  Q +T G   
Sbjct: 504  ESELGKGSTFWFTLTSELATSGEA---------IAPRDALRGERV--IYLEQQKTTGLAV 552

Query: 707  -SLFSSNGTSRSKKLLPNSI--GFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAE 763
              L    G    +   P ++      A K    S+  Y+       +        CS+  
Sbjct: 553  EHLLRDWGMVVDRVASPGALQEHIEEAQK----SQAGYAVAIVGITRHLLNSSQYCSLVR 608

Query: 764  VAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSK 823
              E   +  +         ++T +S     H+        P    + + E    ++    
Sbjct: 609  TLEIERDCRTLLLTPTLETHDTPLSGLASGHL------TKPVCRDSLYDEL---LLLVHG 659

Query: 824  TNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLG 883
             N   ++ E +   +R+      ++A VP        ++L V+DN  N+ +  ++++   
Sbjct: 660  INSSGRVPEYEISANRV------TTANVP--------RVLAVDDNDANLKLVMTLLEDCQ 705

Query: 884  HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIE 943
               +  ++G EA+   + + +DL+ MD+ MP MDG++ T  +R   DTGN          
Sbjct: 706  LDAEGASSGFEALSKARQKPFDLVFMDLQMPGMDGVETTARLREM-DTGN---------- 754

Query: 944  QAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                         R PIIA+TA+ALS+  E     G D ++ KP++  +L + + +Y
Sbjct: 755  ------------HRTPIIALTAHALSDEQERLTKQGFDGYMPKPISSGQLNDIIHEY 799


>gi|418741078|ref|ZP_13297454.1| 7TM diverse intracellular signaling [Leptospira kirschneri serovar
           Valbuzzi str. 200702274]
 gi|410751673|gb|EKR08650.1| 7TM diverse intracellular signaling [Leptospira kirschneri serovar
           Valbuzzi str. 200702274]
          Length = 820

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 151/337 (44%), Gaps = 73/337 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 402 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG 461

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G               K +L+  
Sbjct: 462 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAG---------------KVILERE 506

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK  I+ YV  +P
Sbjct: 507 VFSIRSVL-------DE-----------IHDLLFPLAKQKEIDFRLEGKSEIQEYVYGDP 548

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N   D                   
Sbjct: 549 ------LRLRQILWNLAGNGIKFTNRGEVVLKVAQKNISKD------------------- 583

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
                         V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 584 -------------GVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 630

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEE 672
            KQL+EL GG L + S+   GS FTF + Y +  I E
Sbjct: 631 TKQLIELQGGVLKLESQEGEGSKFTFTIDYDIPSILE 667



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 693  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLETFDIILMDIHMPEVDGIE 752

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N   + P IIA+TA+A+  S E+  + G
Sbjct: 753  ATKWIR------------------------SKNQNSKFPIIIALTADAIESSREKYISKG 788

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 789  MNDCLTKPLDLPILKSTLDLW 809


>gi|418679184|ref|ZP_13240449.1| 7TM diverse intracellular signaling [Leptospira kirschneri serovar
           Grippotyphosa str. RM52]
 gi|400320599|gb|EJO68468.1| 7TM diverse intracellular signaling [Leptospira kirschneri serovar
           Grippotyphosa str. RM52]
          Length = 820

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 151/337 (44%), Gaps = 73/337 (21%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILS 396
           + +  L++EI  ++  E EL +   + E+  + K   LA MSHEIR+P+ GV+ M ++L 
Sbjct: 402 KNIVLLKKEIQQRRETEWELIQAKEVAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLG 461

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            TKL+ EQ++ + V+  S   +LQ+INDILD SK+E+G               K +L+  
Sbjct: 462 TTKLNDEQKEYVEVLSVSAKSLLQIINDILDFSKIEAG---------------KVILERE 506

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA-IKFTPEGKVGIKLYVVPEP 515
             S++ +L       D+           I  +L  L     I F  EGK  I+ YV  +P
Sbjct: 507 VFSIRSVL-------DE-----------IHDLLFPLAKQKEIDFRLEGKSEIQEYVYGDP 548

Query: 516 PFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTP 575
                 L+ +   +  A + +K           + +N   D                   
Sbjct: 549 ------LRLRQILWNLAGNGIKFTNRGEVVLKVAQKNISKD------------------- 583

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
                         V I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I
Sbjct: 584 -------------GVSIEFTVMDSGIGIPLEKQKQVFEAFSQNDTSTARKFGGSGLGLSI 630

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEE 672
            KQL+EL GG L + S+   GS FTF + Y +  I E
Sbjct: 631 TKQLIELQGGVLKLESQEGEGSKFTFTIDYDIPSILE 667



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 25/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN+ N ++ +  +K+LG+   VV+NG E +  +Q + +D+ILMD+ MP +DG++
Sbjct: 693  RILVAEDNETNCLLIERALKKLGYDPTVVHNGREVIERMQLETFDIILMDIHMPEVDGIE 752

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP-IIAMTANALSESAEECFANG 979
            AT+ IR                        S N   + P IIA+TA+A+  S E+  + G
Sbjct: 753  ATKWIR------------------------SKNQNSKFPIIIALTADAIESSREKYISKG 788

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
            M+  ++KP+    LK  L+ +
Sbjct: 789  MNDCLTKPLDLPILKSTLDLW 809


>gi|390952483|ref|YP_006416242.1| signal transduction histidine kinase [Thiocystis violascens DSM
           198]
 gi|390429052|gb|AFL76117.1| signal transduction histidine kinase [Thiocystis violascens DSM
           198]
          Length = 556

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 109/174 (62%), Gaps = 3/174 (1%)

Query: 338 EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
           E  A+L  ++ + +A + EL +     E   RAK + LA MSHEIR+PL  ++ M+E+L+
Sbjct: 114 ELAARLNTQVRLSRA-DAELKQAKSDAESANRAKSEFLANMSHEIRTPLNAIIGMSELLT 172

Query: 397 NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            T LD  QR  +G++ +SG+ +L LI+DILD SK+E+G+++L   +F  ++ V+  L   
Sbjct: 173 TTPLDATQRDYVGIIETSGNALLFLISDILDYSKIEAGMLELHPLRFVLQDCVQGALDLV 232

Query: 457 A-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
              + +K L L  ++   +P E +GD  R+RQI+ NL+SNA+KFT  G V I L
Sbjct: 233 KNKAWEKQLRLTVELDPGLPREFVGDDHRLRQIIVNLVSNAVKFTERGSVAIAL 286



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/144 (42%), Positives = 80/144 (55%), Gaps = 23/144 (15%)

Query: 854 TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCM 913
           T P P+ +ILL EDN IN MV   ++K LG   DVVNNGVEAV A +   YD+ILMDV M
Sbjct: 435 TDPPPRLRILLAEDNPINQMVTLKLLKHLGLQADVVNNGVEAVEASKQSVYDVILMDVQM 494

Query: 914 PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE 973
           P +DG+ A+R IR                          NH ++  IIA+TANA ++  +
Sbjct: 495 PELDGIGASRQIRQL----------------------PPNH-RQPRIIALTANATADDRQ 531

Query: 974 ECFANGMDSFVSKPVTFQKLKECL 997
            C   GM+ F +KP+  +KL E L
Sbjct: 532 ACLDAGMNDFATKPIRMEKLVELL 555



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK--V 653
           V DTG+GIP  A   LF+K+ QV A   R+YGGTGLGLAIC++L ELMGG + V S    
Sbjct: 320 VQDTGVGIPREAQSRLFQKFSQVDASTTRRYGGTGLGLAICRRLSELMGGGIEVESAGVP 379

Query: 654 HCGSTF--TFILP 664
             GS F  T+++P
Sbjct: 380 GQGSIFRCTWLMP 392


>gi|381189393|ref|ZP_09896941.1| diguanylate cyclase/phosphodiesterase [Flavobacterium frigoris PS1]
 gi|379648602|gb|EIA07189.1| diguanylate cyclase/phosphodiesterase [Flavobacterium frigoris PS1]
          Length = 1120

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/203 (36%), Positives = 121/203 (59%), Gaps = 6/203 (2%)

Query: 318 GETIGVNYMGMDVTDQ-VRKREKM-AKLREEIAVQKAKETELNK--TIHITEETMRAKQ- 372
           G  +GV  +  D+TDQ V + E + AK+  E+A   A+E + N      I E  ++AKQ 
Sbjct: 561 GNVLGVVVVARDITDQKVIETELIEAKVFAELATGIAEEEKRNAEYAALIAENAVKAKQQ 620

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            L+ MSHEIR+P+  ++   +++  T L  +Q++ L  +  SGD ++ LINDILDL+KV+
Sbjct: 621 FLSNMSHEIRTPMNAIIGFTKVVLKTDLSEKQKEYLSAIKMSGDALIVLINDILDLAKVD 680

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G M  E   F+ +  +  +L      +Q K L L  +   ++P  +IGD +R+ QI+ N
Sbjct: 681 AGKMTFEKIPFKLKSSISSMLHLFETKIQEKNLKLITEYDPNIPPIIIGDPVRLHQIILN 740

Query: 492 LISNAIKFTPEGKVGIKLYVVPE 514
           L+SNA+KFT +GK+ + + +V E
Sbjct: 741 LVSNAVKFTSKGKITVAVRLVQE 763



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 584 EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
           ED E  + I   V DTGIGIPE  L T+F  + Q S+  +R YGGTGLGLAI KQLVE  
Sbjct: 763 EDAENAI-IEFAVTDTGIGIPEEKLLTIFDNFQQASSGTSRIYGGTGLGLAIVKQLVEPQ 821

Query: 644 GGRLTVTSKVHCGSTFTFILPYQVSPIEENSD 675
           GG + V S+V  G+TF+F L ++ + +E   D
Sbjct: 822 GGAIDVISEVGVGTTFSFRLKFEKTDLEAELD 853



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 25/128 (19%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           K+L+VED  +N ++ K+++   G   D+  NG  A+  ++ + YD+ILMD+ MPVM+G +
Sbjct: 867 KVLVVEDIALNQLLMKTLLDDFGFERDIAENGKIAIEKLKNKEYDVILMDLQMPVMNGFE 926

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           +T  IR   ++                         +IPIIA+TA+  +    +C A GM
Sbjct: 927 STEYIRKTLNS-------------------------QIPIIALTADVTTVDLAKCKAVGM 961

Query: 981 DSFVSKPV 988
           + +++KPV
Sbjct: 962 NDYIAKPV 969


>gi|358638317|dbj|BAL25614.1| putative hybrid sensor and regulator protein [Azoarcus sp. KH32C]
          Length = 1068

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 112/196 (57%), Gaps = 2/196 (1%)

Query: 315 SKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-M 373
           +K G +  VN   + + D   K  +   +R +I  +K  E EL       E   +AK   
Sbjct: 365 AKGGSSFWVNATIVPLADADGKLSQFIAIRTDITERKRVEQELQDAKLAAEAANQAKSDF 424

Query: 374 LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433
           LA MSHEIR+P+ G++ M E++ +T LD  QR+ L ++ SS + +L ++NDILD SK+E+
Sbjct: 425 LANMSHEIRTPMNGIIGMTELVLDTALDTGQREHLEIVRSSAESLLVILNDILDFSKIEA 484

Query: 434 GVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNL 492
           G + +E   F     +   L+  A  + +K L L  ++++D+P  V GD  R+RQ+LTNL
Sbjct: 485 GKLVVEHISFNLPLAISETLKCLAVRAGKKGLQLHCELSEDLPAYVSGDPGRLRQVLTNL 544

Query: 493 ISNAIKFTPEGKVGIK 508
             NAIKFT  G + ++
Sbjct: 545 CDNAIKFTDTGSITVR 560



 Score =  102 bits (255), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 32/194 (16%)

Query: 816  REMIQTSKTNEPQKICEMQEKPDRI--SQSPSSSSAEVPETKPKPKPK-------ILLVE 866
            RE+   +  ++P    E+++   R+  ++ P + +   P+   +   K       ILLVE
Sbjct: 765  RELGLAAYLSKPTTPLELRDTLTRVLAAREPDAVAGTEPDLVTRHTLKEHQRHLSILLVE 824

Query: 867  DNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIR 926
            D+ IN  +A  + +  GH + +  NG EAV      ++D++ MD+ MPVM G++ATRLIR
Sbjct: 825  DHPINQKLAAELFEMWGHRVTLAANGHEAVDLFPTMHWDIVFMDMQMPVMGGVEATRLIR 884

Query: 927  SFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSK 986
            + E  G                       +R PIIAMTA+A+SE  + C   GMD  ++K
Sbjct: 885  ASEPPG-----------------------RRTPIIAMTASAMSEDRKRCLEAGMDDHIAK 921

Query: 987  PVTFQKLKECLEQY 1000
            P+  Q +   LEQY
Sbjct: 922  PIDRQAVHRLLEQY 935



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 45/75 (60%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTGIGI  +    +F  + Q      RK+GG+GLGL IC +LV LMGGR+ + S
Sbjct: 573 IHVSVADTGIGIGHDQQKKVFAAFDQADTSTTRKFGGSGLGLTICSRLVGLMGGRIWLES 632

Query: 652 KVHCGSTFTFILPYQ 666
           ++  GSTF F +  Q
Sbjct: 633 EIGRGSTFHFTVDMQ 647


>gi|421113735|ref|ZP_15574174.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
           JET]
 gi|410800835|gb|EKS07014.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
           JET]
          Length = 821

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 144/328 (43%), Gaps = 75/328 (22%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L++EI  ++  E EL +   I E+  + K   LA MSHEIR+P+ GV+ M ++L  TKL+
Sbjct: 409 LKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGTTKLN 468

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQ++ + ++  S   +LQ+INDILD SK+E+                            
Sbjct: 469 DEQKEYVKILSVSAKSLLQIINDILDFSKIEA---------------------------- 500

Query: 462 KILMLEGDIADDVPIEVIGDVL-RIRQILTNLISNA-IKFTPEGKVGIKLYVVPEPPFAK 519
                 G I+ D  +  I  VL  I  +L  L     I    EGK  I+ YV  +     
Sbjct: 501 ------GKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRLEGKFDIQEYVYGDQ---- 550

Query: 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHG 579
             L+ +   +    + +K   H     + S +N                       +S  
Sbjct: 551 --LRLRQILWNLTGNGIKFTNHGEVVLSVSQEN-----------------------ISKN 585

Query: 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
           N         + I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I KQL
Sbjct: 586 N---------ISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQL 636

Query: 640 VELMGGRLTVTSKVHCGSTFTFILPYQV 667
           VEL GG L + SK   GS FTF + Y +
Sbjct: 637 VELQGGTLNLESKEGFGSKFTFAITYDI 664



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 32/176 (18%)

Query: 825  NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
            +E +KI E ++  D  S   +++S  +         KIL+ EDN+ N ++ +  +K+LG+
Sbjct: 668  SEIEKILEAEKTKDLESAYSNATSNGM---------KILVAEDNETNCLLIERALKKLGY 718

Query: 885  SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQ 944
               VV NG E +  +Q   +DLILMD+ MP +DG++AT+ IRS +    +          
Sbjct: 719  DPVVVRNGREVIEKMQLDFFDLILMDIHMPEVDGIEATKWIRSQKQNAEFPI-------- 770

Query: 945  AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                           IIA+TA+ +  + E   + GM+  ++KP+    LK+ L+ +
Sbjct: 771  ---------------IIALTADVIESNKEIYISKGMNDCLTKPLDLPLLKKSLDFW 811


>gi|386346558|ref|YP_006044807.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
 gi|339411525|gb|AEJ61090.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 785

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 115/203 (56%), Gaps = 26/203 (12%)

Query: 314 FSKSGETI-GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ 372
           FS+  E + GV     D+TDQ    E + K REE A++  +                  +
Sbjct: 103 FSRGAEVLLGV----FDITDQKVTEEHLRKEREE-AIRSVQSK---------------SR 142

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+PL  ++ M E+L +T+LD EQR  +  +  SG+ +L LINDILD SK+E
Sbjct: 143 FLANMSHEIRTPLHTILGMTELLEDTRLDEEQRDYVQQIRFSGEALLALINDILDYSKIE 202

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAASLQ---KILMLEGDIADDVPIEVIGDVLRIRQIL 489
           +G + +E   F   EVV+  +     SLQ   K L +  DI ++VP  V GD LRIRQIL
Sbjct: 203 AGKLPMEIIDFDLYEVVEQAV--GMVSLQAHKKHLEVVVDIGEEVPRRVKGDPLRIRQIL 260

Query: 490 TNLISNAIKFTPEGKVGIKLYVV 512
            NL +NA+KFT +G V  ++ +V
Sbjct: 261 VNLANNAVKFTEKGHVFCRVQLV 283



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 61/105 (58%), Gaps = 3/105 (2%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           +   W+   V DTGIGIPEN    LFR + Q+     R++GGTGLGLAI K LVE+M G 
Sbjct: 287 KGVAWVAFTVEDTGIGIPENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGE 346

Query: 647 LTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTD 691
           + V S+   GS+F F+LP    PI E+ + P  L ++     V D
Sbjct: 347 IGVRSREGEGSSFWFLLPL---PIVESYEPPVSLGEVGSLLLVED 388



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 26/140 (18%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            IL+ ED+ +N  +  +++ +LG+ +++  NG EAV        DLI MDV MP M+G  A
Sbjct: 532  ILVAEDHIVNQELFFTILSRLGYRVELAGNGKEAVEKGLALKPDLIFMDVQMPEMNGYDA 591

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
             R++R            E G E               P+IA+TA+A  E  E   A GM 
Sbjct: 592  ARVLR------------EHGYEG--------------PVIAVTASAFREDRERALAAGMS 625

Query: 982  SFVSKPVTFQKLKECLEQYF 1001
             F+ KP   + L   L+++ 
Sbjct: 626  DFLPKPFKKKDLLPVLQKWL 645


>gi|345302947|ref|YP_004824849.1| histidine kinase [Rhodothermus marinus SG0.5JP17-172]
 gi|345112180|gb|AEN73012.1| histidine kinase [Rhodothermus marinus SG0.5JP17-172]
          Length = 1346

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 104/202 (51%), Gaps = 25/202 (12%)

Query: 801  FQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP 860
            F    ++ T  S     +++  + + P    + Q + D  + +PS SSA  P + P+P  
Sbjct: 1162 FAAVLSKPTRQSYLFNTLVRVLQESRPVVAAKQQAQQDESAATPSDSSA-TPSSTPRPAG 1220

Query: 861  K--ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            +  +LL EDN +N  VA   +++LG++ DVV +G +AV A     YD ILMDV MPVMDG
Sbjct: 1221 RGHLLLAEDNPVNQKVALYHLERLGYTCDVVGDGKQAVEAALRGGYDAILMDVHMPVMDG 1280

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
             +AT  IR  E        AE G              +  PIIAMTANAL    E C   
Sbjct: 1281 FEATAQIRERE--------AELG--------------RHTPIIAMTANALRGERERCLEA 1318

Query: 979  GMDSFVSKPVTFQKLKECLEQY 1000
            GMD +++KP    +LK  LE++
Sbjct: 1319 GMDDYIAKPFKKDELKTVLERW 1340



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 112/182 (61%), Gaps = 21/182 (11%)

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM----LATMSHEIRSPLTGV 388
           Q +KR+  A L +   +++ KE EL +     EE +RA ++    LA MSHEIR+P+ GV
Sbjct: 782 QAQKRQLEATLED---LRRTKE-ELERA---NEELVRASRLKSEFLANMSHEIRTPMNGV 834

Query: 389 VSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448
           + M E+L    L +EQR+ + ++  SG+ +L ++NDILD SK+E+G ++LE   F  +E 
Sbjct: 835 LGMTELLLEMDLTKEQRECVEIIHRSGETLLTILNDILDFSKIEAGRLELENIDFNLQET 894

Query: 449 VKHVL-----QTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
           ++ V+     + AA  L+ I  +E     +  +EV GD  R+RQ+L+NLI NAIKFT  G
Sbjct: 895 IEDVITLFAPRAAAKQLELICFVE-----ERALEVQGDPHRLRQVLSNLIGNAIKFTERG 949

Query: 504 KV 505
           +V
Sbjct: 950 EV 951



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 54/76 (71%)

Query: 593  RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652
            R  V DTGIGIP + L  LF+ + Q+     R+YGGTGLGLAI KQLVE+MGG + V S+
Sbjct: 968  RISVRDTGIGIPPDRLAHLFQPFTQLDGSTTRRYGGTGLGLAISKQLVEMMGGTIGVESE 1027

Query: 653  VHCGSTFTFILPYQVS 668
            V  GSTFT  +P+++S
Sbjct: 1028 VGKGSTFTVRIPFRLS 1043


>gi|209965866|ref|YP_002298781.1| sensory box histidine kinase [Rhodospirillum centenum SW]
 gi|209959332|gb|ACI99968.1| sensory box histidine kinase [Rhodospirillum centenum SW]
          Length = 1057

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 123/210 (58%), Gaps = 15/210 (7%)

Query: 312 PVFSKSGETIGVNYMGM--DVTDQVRKREKMAKLREEIAVQKAKET----ELNKTIHITE 365
           PV+   GE   V Y+G   D+TD+ ++  ++ + R+ +  Q ++ T    EL       E
Sbjct: 618 PVYDDRGEL--VKYVGALQDITDRKQRELELEEARDRLERQASEMTALALELQTARDAAE 675

Query: 366 ETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIND 424
              RAK + LA MSHE+R+P+TGV+ M ++L  T +  +QR+ L  + SS D +L ++ND
Sbjct: 676 AASRAKSRFLAVMSHELRTPMTGVIGMIDLLLGTTVTSDQRRYLETLHSSADALLVVLND 735

Query: 425 ILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILML-----EGDIADDVPIEV 478
           ILD SK+E+G + +EA   R + ++  V+   A A+ QK + L     E    + +P E+
Sbjct: 736 ILDFSKIEAGQLVIEAIPVRLQALLDDVIDLFAPAASQKGVELRVRQPERRQKNRLPKEL 795

Query: 479 IGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            GD  R+RQ+L NL+ NA+KFTP G + ++
Sbjct: 796 TGDPTRLRQVLMNLVGNAVKFTPAGSIELR 825



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 24/138 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++LL EDN +N ++  +M++++G   D V NG EAV AVQ + YD++LMD+ MP MDG  
Sbjct: 936  RVLLAEDNPVNRLLITTMLERMGFRPDAVANGREAVEAVQREPYDVVLMDMQMPEMDG-- 993

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES-AEECFANG 979
                     DT        AG+ + +P         R+PI+A+TA+AL E+ A    A  
Sbjct: 994  ---------DTA-------AGVIRDLPEP-----LCRLPIVALTADALPENRARHLRARL 1032

Query: 980  MDSFVSKPVTFQKLKECL 997
             D +++KP+ + +L E +
Sbjct: 1033 FDEYLTKPIDWPRLGEVI 1050



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 49/74 (66%)

Query: 588 ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
            T  +R +V DTGIGIP + +P LF  + Q  A   R++GGTGLGLAICK+LV +MGG +
Sbjct: 834 GTWLLRFEVEDTGIGIPPDVVPMLFESFTQADASTTRRFGGTGLGLAICKRLVTMMGGEI 893

Query: 648 TVTSKVHCGSTFTF 661
            V S+   GS F F
Sbjct: 894 GVRSEPRRGSVFWF 907


>gi|386395092|ref|ZP_10079870.1| signal transduction histidine kinase [Bradyrhizobium sp. WSM1253]
 gi|385735718|gb|EIG55914.1| signal transduction histidine kinase [Bradyrhizobium sp. WSM1253]
          Length = 769

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 114/206 (55%), Gaps = 25/206 (12%)

Query: 303 SKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
           ++ + +  +P + + G+ +G    G DVT++ R  +  A+ R +                
Sbjct: 320 ARLWSLTAKPAYDRDGQFLGYRGFGRDVTERWRAEKAEAESRAK---------------- 363

Query: 363 ITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
                      LA MSHEIR+P+ GV+ +A +L  TKLD EQR+ +  +  SGD + +++
Sbjct: 364 --------SDFLAVMSHEIRTPMNGVLGLASVLLETKLDPEQREAVTTIRESGDNLQRIL 415

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGD 481
           NDILDLSK+E+G    E   F P+ +V+ V     AS + K L ++ ++  ++P  + GD
Sbjct: 416 NDILDLSKLEAGRFAFEVIDFAPQAMVEAVATIVRASAKSKGLAVKVELDPNLPPTLRGD 475

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGI 507
           V RIRQ+L NL SNA+KFT  G+V I
Sbjct: 476 VARIRQVLLNLASNAVKFTDGGEVTI 501



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 69/128 (53%), Gaps = 23/128 (17%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           K+L+ ED+ +N MV   M+      + VV +GVEAV AV   +YD++LMDV MP MDGL 
Sbjct: 620 KVLVAEDDAVNRMVVSKMLGAFDVELRVVTDGVEAVAAVSEDDYDIVLMDVRMPEMDGLA 679

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR IR           AE G             F  +PIIA+TANA  E  + C   GM
Sbjct: 680 ATRAIR-----------AEGGC------------FAALPIIALTANAFPEDVKICREAGM 716

Query: 981 DSFVSKPV 988
             F++KP+
Sbjct: 717 SDFLAKPL 724



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 9/102 (8%)

Query: 585 DLEATV-WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
           DL ATV W    V D+GIGI    L  LF  + Q  A  +R++GGTGLGLAI ++++E M
Sbjct: 510 DLLATVEW---SVTDSGIGIAPEKLGELFSDFAQADASISRRFGGTGLGLAISRRIIEQM 566

Query: 644 GGRLTVTSKVHCGSTFTF--ILPY---QVSPIEENSDDPDDL 680
           GG + VTS    GSTF F  +LP+   Q S  +   ++ DDL
Sbjct: 567 GGTIGVTSTPGEGSTFRFTLVLPWSQVQTSDHDAGREEADDL 608


>gi|390949113|ref|YP_006412872.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
 gi|390425682|gb|AFL72747.1| PAS domain S-box [Thiocystis violascens DSM 198]
          Length = 1524

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/194 (39%), Positives = 110/194 (56%), Gaps = 10/194 (5%)

Query: 329  DVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-------QMLATMSHEI 381
            D+T++ R  + + + +EE    +  E    +T+   E+  RA+       + LA MSHEI
Sbjct: 814  DITERKRADDALHRAKEE--ADRLNEHLAQQTVFAREQAARAEMASVAKSEFLANMSHEI 871

Query: 382  RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
            R+P+ GV+ M  +L  T LD EQR    V+ +SG+ +L+LINDILD SK+E+G + LE  
Sbjct: 872  RTPMNGVIGMTGLLLETDLDDEQRHFAEVVRASGESLLRLINDILDFSKIEAGKLDLEML 931

Query: 442  KFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFT 500
             F     ++      A   Q K L    D   +VP  + GD  R+RQILTNL  NAIKFT
Sbjct: 932  DFDLSLSLEDFATALALRAQEKGLEFLCDADPEVPAFLRGDPGRLRQILTNLAGNAIKFT 991

Query: 501  PEGKVGIKLYVVPE 514
            P G+V I++ V+ E
Sbjct: 992  PSGEVAIRVSVLEE 1005



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 80/144 (55%), Gaps = 21/144 (14%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            K +ILL EDN  N  VA  ++K++G   D V NG EAV A+    YDL+LMDV MPVMDG
Sbjct: 1257 KVRILLAEDNTTNQQVALGILKKMGLHADAVANGAEAVTALASIPYDLVLMDVQMPVMDG 1316

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            L+ATR IR                     +S S+     +PIIAMTA A+    E+C   
Sbjct: 1317 LEATRAIR---------------------ASSSAVRNPGLPIIAMTAGAMRGDQEQCLDA 1355

Query: 979  GMDSFVSKPVTFQKLKECLEQYFP 1002
            GM+ +VSKPV+   L E L ++ P
Sbjct: 1356 GMNDYVSKPVSPAILAEVLARWLP 1379



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 54/90 (60%)

Query: 572  PGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGL 631
            P   V+   S+ E+    V +R  V DTGIGIPE+ L  LF K+ QV A   R+YGGTGL
Sbjct: 992  PSGEVAIRVSVLEERTEDVLLRFAVRDTGIGIPEDKLGLLFDKFSQVDASTTRQYGGTGL 1051

Query: 632  GLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
            GLAI KQL  LM G + V S+   GS F F
Sbjct: 1052 GLAISKQLAALMDGEVGVISQAGKGSEFWF 1081


>gi|16125173|ref|NP_419737.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|221233906|ref|YP_002516342.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
 gi|13422191|gb|AAK22905.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|220963078|gb|ACL94434.1| two component sensor histidine kinase [Caulobacter crescentus
           NA1000]
          Length = 586

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 143/271 (52%), Gaps = 28/271 (10%)

Query: 254 LHEEDILGKTDVEIFSGAGVKESQDFKRE----VLEKGLPAKREITFETELFGSKTFLIY 309
           LH ED++    V I+ G  V  +Q+F+ +    +L  GL         T +     F  +
Sbjct: 102 LHGEDLMKIAAVAIWCGQ-VIYTQNFRHQSAALLLLNGL---------TPMASLLIFPFF 151

Query: 310 VEPVFSKSGETIG---VNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEE 366
             P  S + +T     V  +G  +   ++ R    ++ E   + +    E  K +    E
Sbjct: 152 FMPDASAAAQTARWGLVLLVGTTLNVMIQNRAAARRMDE---LTRGLREEREKAL----E 204

Query: 367 TMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDI 425
             RAK   +A  SHE+R+P+ G++ MA  L  + LD  QR+ + +MI SGD ++QL+ND+
Sbjct: 205 AARAKSTFIAVTSHELRTPMNGLLGMAHALQRSTLDPVQREQIALMIKSGDSLMQLLNDV 264

Query: 426 LDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLR 484
           LDLS+VE+G ++L       +++V  V+     A++ K L L  D A D+P  V  D LR
Sbjct: 265 LDLSRVETGKVELAPIDMSLQDLVGEVVDAWRDAAVFKNLSLSVDYAPDLPPGVHADPLR 324

Query: 485 IRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
           IRQ++TNL+SNAIKFT +G  G++L V   P
Sbjct: 325 IRQVVTNLVSNAIKFTVDG--GVRLEVAARP 353



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 23/128 (17%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           ++L+ EDN IN +V ++M++ LG ++ VV NG EA+ A+  + +  +LMD+ MPVMDG+ 
Sbjct: 457 QVLMAEDNAINQLVVRTMLEPLGVALTVVENGQEALEAMAERRFHCVLMDINMPVMDGIT 516

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           A   IR    TGN             P+         +P+IA+TA+A++   E     G 
Sbjct: 517 ALEAIRDGR-TGN-------------PA---------MPVIALTASAMTGDRERFLGLGF 553

Query: 981 DSFVSKPV 988
           D  + KPV
Sbjct: 554 DDHLGKPV 561



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +   V DTG G+P +A+  +F  + Q     +R++GG GLGL+I + L   MGG L +  
Sbjct: 361 VSITVADTGPGVPADAMERVFDSFTQADQTISREHGGAGLGLSIARALARQMGGDLVLVP 420

Query: 652 KVHCGSTFTF 661
               G+ F F
Sbjct: 421 SGR-GACFVF 429


>gi|269139680|ref|YP_003296381.1| integral membrane sensor hybrid histidine kinase [Edwardsiella
           tarda EIB202]
 gi|387868236|ref|YP_005699705.1| Two-component sensor protein RcsC [Edwardsiella tarda FL6-60]
 gi|267985341|gb|ACY85170.1| integral membrane sensor hybrid histidine kinase [Edwardsiella
           tarda EIB202]
 gi|304559549|gb|ADM42213.1| Two-component sensor protein RcsC [Edwardsiella tarda FL6-60]
          Length = 956

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/134 (45%), Positives = 91/134 (67%), Gaps = 1/134 (0%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LAT+SHE+R+PL G++   ++L    L  E ++LLG M +S  L+L++INDILD SK+E
Sbjct: 476 FLATVSHELRTPLYGIIGNLDLLRTKTLPEEVQRLLGAMSNSSGLLLKIINDILDFSKIE 535

Query: 433 SGVMKLEAAKFRPREVVKHVL-QTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           S  +K+E  +F PREV+ H++       ++K L L   I  DVP  + GD++RI+Q+L+N
Sbjct: 536 SEQLKIEPGRFVPREVIPHIIGNYLPLVVRKRLTLYCFIEPDVPEALSGDIMRIQQVLSN 595

Query: 492 LISNAIKFTPEGKV 505
           L+SNAIKFT  G +
Sbjct: 596 LLSNAIKFTDTGCI 609



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 36/192 (18%)

Query: 811  HSEANREMIQT-SKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNK 869
            ++ A  E++Q  ++   P+ + E    PD  S +P+    +  +        +L+V+D+ 
Sbjct: 787  NTAAPLELLQVLNRIFAPESVVEC--SPDSASAAPADRQQDFSDIA------VLIVDDHP 838

Query: 870  INVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSF 928
            IN  +    +  LG S + V  +GV+A+ A+Q Q  D++L DV MP MDG + T  +R  
Sbjct: 839  INRRLLADQLISLGFSQVAVACDGVDALGALQQQAADIVLTDVNMPNMDGYQLTERLR-- 896

Query: 929  EDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
                                       + +PI+ +TANAL+E  + C   GMDS +SKPV
Sbjct: 897  ------------------------QQGRTLPIVGVTANALAEERQRCIEVGMDSCLSKPV 932

Query: 989  TFQKLKECLEQY 1000
              + L   L  Y
Sbjct: 933  MREDLLASLSGY 944


>gi|262195449|ref|YP_003266658.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078796|gb|ACY14765.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 928

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/166 (42%), Positives = 103/166 (62%), Gaps = 2/166 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +IA +   E EL +     +   R K Q LA MSHEIR+PL GV+ MA++L +T L  EQ
Sbjct: 274 DIADRMQIEDELVQAREDAQAASRVKSQFLANMSHEIRTPLNGVLGMADLLLDTGLSPEQ 333

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KI 463
           R+LL  + SS + +  LI D+LD+SK+E+G +++EA  F   E+V    +  A   Q + 
Sbjct: 334 RELLDALQSSANALRGLIEDVLDISKIEAGKLEIEAVSFPLLELVYEAARAIAVRAQEQG 393

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L L  D    +P  V+GD +R RQI+ NL+SNA+KFTP G+V +++
Sbjct: 394 LELIVDAEPALPARVLGDPVRFRQIVLNLLSNAVKFTPAGEVVVRV 439



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 22/142 (15%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++LL ED+  N ++ + ++++ GH +  V+NG+EAV     Q +DL+LMD+ MP +DGL+
Sbjct: 684  RVLLAEDHPTNALLTRRLLERAGHEVVQVSNGLEAVATWAAQRFDLVLMDIQMPELDGLE 743

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR IRS E        A  G                 PI+A+TAN L +  + C   GM
Sbjct: 744  ATRRIRSEER-------ARGGY---------------TPIVALTANTLKDDEQRCLDAGM 781

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D+++ KP+  + L   L    P
Sbjct: 782  DAYLGKPLERRALASILRALAP 803



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTG+G+PE     +F  + Q      R++GGTGLGL IC++L E MGG+L    
Sbjct: 447 IELSVRDTGVGVPEERREAIFESFTQSDGSTTRRFGGTGLGLTICRELAERMGGKLWYEP 506

Query: 652 KVHCGSTFTFILP 664
               GS F+  LP
Sbjct: 507 GDQGGSVFSVSLP 519


>gi|418745911|ref|ZP_13302246.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
           CBC379]
 gi|410793295|gb|EKR91215.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
           CBC379]
          Length = 821

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 144/328 (43%), Gaps = 75/328 (22%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L++EI  ++  E EL +   I E+  + K   LA MSHEIR+P+ GV+ M ++L  TKL+
Sbjct: 409 LKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGTTKLN 468

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQ++ + ++  S   +LQ+INDILD SK+E+                            
Sbjct: 469 DEQKEYVKILSVSAKSLLQIINDILDFSKIEA---------------------------- 500

Query: 462 KILMLEGDIADDVPIEVIGDVL-RIRQILTNLISNA-IKFTPEGKVGIKLYVVPEPPFAK 519
                 G I+ D  +  I  VL  I  +L  L     I    EGK  I+ YV  +     
Sbjct: 501 ------GKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRLEGKFDIQEYVYGDQ---- 550

Query: 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHG 579
             L+ +   +    + +K   H     + S +N                       +S  
Sbjct: 551 --LRLRQILWNLTGNGIKFTNHGEVVLSVSQEN-----------------------ISKN 585

Query: 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
           N         + I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I KQL
Sbjct: 586 N---------ISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQL 636

Query: 640 VELMGGRLTVTSKVHCGSTFTFILPYQV 667
           VEL GG L + SK   GS FTF + Y +
Sbjct: 637 VELQGGTLNLESKEGFGSKFTFAITYDI 664



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 32/176 (18%)

Query: 825  NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
            +E +KI E ++  D  S   +++S  +         KIL+ EDN+ N ++ +  +K+LG+
Sbjct: 668  SEIEKILEAEKTKDLESAYSNATSNGM---------KILVAEDNETNCLLIERALKKLGY 718

Query: 885  SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQ 944
               VV NG E +  +Q   +DLILMD+ MP +DG++AT+ IRS +    +          
Sbjct: 719  DPVVVRNGREVIEKMQLDFFDLILMDIHMPEVDGIEATKWIRSQKQNAEFPI-------- 770

Query: 945  AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                           IIA+TA+ +  + E   + GM+  ++KP+    LK+ L+ +
Sbjct: 771  ---------------IIALTADVIESNKEIYISKGMNDCLTKPLDLPLLKKSLDFW 811


>gi|418754479|ref|ZP_13310705.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
           MOR084]
 gi|409965199|gb|EKO33070.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
           MOR084]
          Length = 821

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 144/328 (43%), Gaps = 75/328 (22%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L++EI  ++  E EL +   I E+  + K   LA MSHEIR+P+ GV+ M ++L  TKL+
Sbjct: 409 LKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGTTKLN 468

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQ++ + ++  S   +LQ+INDILD SK+E+                            
Sbjct: 469 DEQKEYVKILSVSAKSLLQIINDILDFSKIEA---------------------------- 500

Query: 462 KILMLEGDIADDVPIEVIGDVL-RIRQILTNLISNA-IKFTPEGKVGIKLYVVPEPPFAK 519
                 G I+ D  +  I  VL  I  +L  L     I    EGK  I+ YV  +     
Sbjct: 501 ------GKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRLEGKFDIQEYVYGDQ---- 550

Query: 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHG 579
             L+ +   +    + +K   H     + S +N                       +S  
Sbjct: 551 --LRLRQILWNLTGNGIKFTNHGEVVLSVSQEN-----------------------ISKN 585

Query: 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
           N         + I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I KQL
Sbjct: 586 N---------ISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQL 636

Query: 640 VELMGGRLTVTSKVHCGSTFTFILPYQV 667
           VEL GG L + SK   GS FTF + Y +
Sbjct: 637 VELQGGTLNLESKEGFGSKFTFAITYDI 664



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 32/176 (18%)

Query: 825  NEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGH 884
            +E +KI E ++  D  S   +++S  +         KIL+ EDN+ N ++ +  +K+LG+
Sbjct: 668  SEIEKILEAEKTKDLESAYSNATSNGM---------KILVAEDNETNCLLIERALKKLGY 718

Query: 885  SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQ 944
               VV NG E +  +Q   +DLILMD+ MP +DG++AT+ IRS +    +          
Sbjct: 719  DPVVVRNGREVIEKMQLDFFDLILMDIHMPEVDGIEATKWIRSQKQNAEFPI-------- 770

Query: 945  AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                           IIA+TA+ +  + E   + GM+  ++KP+    LK+ L+ +
Sbjct: 771  ---------------IIALTADVIESNKEIYISKGMNDCLTKPLDLPLLKKSLDFW 811


>gi|120601627|ref|YP_966027.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561856|gb|ABM27600.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1005

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 364 TEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
            E   RAK + LA MSHE+R+PL G++ M ++L    LDR+Q +L+ + + SG  +L+++
Sbjct: 627 AESANRAKSEFLANMSHELRTPLNGMLGMLQLLEAGDLDRDQNELVHIALDSGRTLLRVL 686

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDV 482
           +DILDLS++E+G M+L   +F P E V+ V    A   +   +      D++P EV GD 
Sbjct: 687 SDILDLSRIEAGRMELRHDRFSPEEAVRQVYDMFAQDARIRGLRLRWRCDELPCEVWGDG 746

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            R+RQIL NL+ NA+KFT EG VG+++  V
Sbjct: 747 TRLRQILFNLLGNAMKFTHEGTVGVEVCAV 776



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 23/138 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           K+L+ ED  +N M     +  LGH    V NG+EAV A++   +D +LMD+ MP +DGL+
Sbjct: 882 KVLVAEDEAVNRMTLSRCLHHLGHEAVCVTNGLEAVEALREGRFDCVLMDIQMPELDGLE 941

Query: 921 ATRLIRSFEDTGNWDAAAEAGIE-QAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
           A   IR           AEAG + +A+P           P++A+TA+A+    E   A G
Sbjct: 942 ALARIR-----------AEAGEQARALP-----------PVVALTAHAMEGDRERFLAAG 979

Query: 980 MDSFVSKPVTFQKLKECL 997
           M +++ KP+   +L+  L
Sbjct: 980 MSAYIPKPIELGELERVL 997



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 49/81 (60%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E +V +   V DTGIGIP + L ++F  + Q+     R+Y GTGLGL I ++LV LMGG 
Sbjct: 780 EESVRLLFSVSDTGIGIPHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHLMGGG 839

Query: 647 LTVTSKVHCGSTFTFILPYQV 667
           L V S +  G+     LP+++
Sbjct: 840 LNVESALGEGTAVHVCLPFRL 860


>gi|71018371|ref|XP_759416.1| hypothetical protein UM03269.1 [Ustilago maydis 521]
 gi|46098947|gb|EAK84180.1| hypothetical protein UM03269.1 [Ustilago maydis 521]
          Length = 1482

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 23/262 (8%)

Query: 256  EEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFS 315
            +  ++G++  E++   G+       RE + + L  +  +  E E+ G + F     P   
Sbjct: 824  QRSMIGRSIYEVWDSPGI-------REAIGRALNGE-SVVQEMEIEG-RWFRTQYTPQRE 874

Query: 316  KS-------GETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETM 368
            +S       G  IGV    MD+TD+ R   K+ +   E +   A ET   +   I  E  
Sbjct: 875  ESYDHEANEGTIIGVVGASMDITDRRRAELKLEESMHERSRALAAETAAKEASRIKSE-- 932

Query: 369  RAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
                 LA MSHEIR+P+ GV+ ++E+L +T+L +EQR     +  S D +L +INDILD 
Sbjct: 933  ----FLANMSHEIRTPIAGVIGLSELLCDTQLSQEQRDFAENIQRSADALLTVINDILDF 988

Query: 429  SKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
             K+E G M LE   F    V+    +    A+ +K L    +   +   +++GD  R+RQ
Sbjct: 989  EKLELGKMDLEKTAFNLNVVIMDTQKMLTFATQKKGLEFRNECQLNFTGQIVGDAGRLRQ 1048

Query: 488  ILTNLISNAIKFTPEGKVGIKL 509
            +LTNL++NAIKFT  G + +++
Sbjct: 1049 VLTNLLTNAIKFTAVGSITLRV 1070



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 22/153 (14%)

Query: 849  AEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLIL 908
            +E P  +P+    IL+ EDN IN  +A   +K++G S  V  +G+EA+  V  ++YDLIL
Sbjct: 1189 SENPLQRPRKDIWILVAEDNLINAQIALRTLKKMGFSCKVAKDGLEAIDEVGKRSYDLIL 1248

Query: 909  MDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANAL 968
            MD  MP  DG +AT+ +R  +                      S   +  PIIAMTA+A+
Sbjct: 1249 MDCHMPNCDGYEATKRLRKSD----------------------SVDIRTTPIIAMTASAI 1286

Query: 969  SESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                E+C A GM  ++SKPV    L+  L ++ 
Sbjct: 1287 RGDREKCLAAGMSDYLSKPVKSAALESTLVKWL 1319



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 54/89 (60%), Gaps = 1/89 (1%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +  +V DTG GI +  L  LF+ + Q     AR++GGTGLGL+ICK LV+LMGG + + S
Sbjct: 1082 VHFEVRDTGCGISQATLKRLFQPFSQADPSFARRFGGTGLGLSICKNLVDLMGGTIGLES 1141

Query: 652  KVHCGSTFTFILPYQ-VSPIEENSDDPDD 679
              + GS   F +P++ V  +E + D   D
Sbjct: 1142 VENKGSNAWFSIPFEKVQTLESSGDSSPD 1170


>gi|46581083|ref|YP_011891.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|387154316|ref|YP_005703252.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
 gi|46450504|gb|AAS97151.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234760|gb|ADP87614.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1005

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/150 (42%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 364 TEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
            E   RAK + LA MSHE+R+PL G++ M ++L    LDR+Q +L+ + + SG  +L+++
Sbjct: 627 AESANRAKSEFLANMSHELRTPLNGMLGMLQLLEAGDLDRDQNELVHIALDSGRTLLRVL 686

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDV 482
           +DILDLS++E+G M+L   +F P E V+ V    A   +   +      D++P EV GD 
Sbjct: 687 SDILDLSRIEAGRMELRHDRFSPEEAVRQVYDMFAQDARIRGLRLRWRCDELPCEVWGDG 746

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            R+RQIL NL+ NA+KFT EG VG+++  V
Sbjct: 747 TRLRQILFNLLGNAMKFTHEGTVGVEVCAV 776



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 23/138 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           K+L+ ED  +N M     +  LGH    V NG+EAV A++   +D +LMD+ MP +DGL+
Sbjct: 882 KVLVAEDEAVNRMTLSRCLHHLGHEAVCVTNGLEAVEALREGRFDCVLMDIQMPELDGLE 941

Query: 921 ATRLIRSFEDTGNWDAAAEAGIE-QAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
           A   IR           AEAG + +A+P           P++A+TA+A+    E   A G
Sbjct: 942 ALARIR-----------AEAGEQARALP-----------PVVALTAHAMEGDRERFLAAG 979

Query: 980 MDSFVSKPVTFQKLKECL 997
           M +++ KP+   +L+  L
Sbjct: 980 MSAYIPKPIELGELERVL 997



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 49/81 (60%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E +V +   V DTGIGIP + L ++F  + Q+     R+Y GTGLGL I ++LV LMGG 
Sbjct: 780 EESVRLLFSVSDTGIGIPHDRLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHLMGGG 839

Query: 647 LTVTSKVHCGSTFTFILPYQV 667
           L V S +  G+     LP+++
Sbjct: 840 LNVESALGEGTAVHVCLPFRL 860


>gi|389680730|ref|ZP_10172079.1| putative sensor histidine kinase/response regulator RcsC
           [Pseudomonas chlororaphis O6]
 gi|388555317|gb|EIM18561.1| putative sensor histidine kinase/response regulator RcsC
           [Pseudomonas chlororaphis O6]
          Length = 1076

 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 106/166 (63%), Gaps = 2/166 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+  K  E  L +     + +  AK + LATMSHEIR+PL GV+   E+L+ + L+  Q
Sbjct: 469 DISAYKLAERALAEAKQSADASNEAKTVFLATMSHEIRTPLYGVLGTLELLTLSPLNALQ 528

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKI 463
           R  +  M  S  ++LQ+I+DILD+SK+E+G + +E  +F P E+++ VLQ  +AA+  K 
Sbjct: 529 RSQVQTMQRSSSILLQVISDILDVSKIEAGQLAIEHVEFSPLEMIEDVLQAYSAAAGAKG 588

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L L   +  ++P  V GD  RIRQIL NL+SNAIKFT  G++ +++
Sbjct: 589 LHLYACVEVELPRRVRGDAARIRQILNNLLSNAIKFTDVGRIALRV 634



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 26/153 (16%)

Query: 845 SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
           +S SAE  ++  +    +L+ EDN IN  + K  ++QLG S+ + +NGVEA+       +
Sbjct: 836 ASESAEAVQSWCRFSLHVLVAEDNPINQTLLKEQLQQLGCSVALASNGVEALRLWDHDAF 895

Query: 905 DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
           D++L DV MP M+G + T  +R                         SN     PI+ +T
Sbjct: 896 DVVLTDVNMPEMNGYELTAALR----------------------RADSN----TPIVGVT 929

Query: 965 ANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
           ANAL E  E C   GM++ V KP++ Q L   L
Sbjct: 930 ANALREEEERCIGVGMNACVVKPMSLQTLNNVL 962


>gi|410449547|ref|ZP_11303602.1| 7TM diverse intracellular signaling [Leptospira sp. Fiocruz LV3954]
 gi|410016772|gb|EKO78849.1| 7TM diverse intracellular signaling [Leptospira sp. Fiocruz LV3954]
          Length = 821

 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 144/328 (43%), Gaps = 75/328 (22%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L++EI  ++  E EL +   I E+  + K   LA MSHEIR+P+ GV+ M ++L  TKL+
Sbjct: 409 LKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGTTKLN 468

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQ++ + ++  S   +LQ+INDILD SK+E+                            
Sbjct: 469 DEQKEYVKILSVSAKSLLQIINDILDFSKIEA---------------------------- 500

Query: 462 KILMLEGDIADDVPIEVIGDVL-RIRQILTNLISNA-IKFTPEGKVGIKLYVVPEPPFAK 519
                 G I+ D  +  I  VL  I  +L  L     I    EGK  I+ YV  +     
Sbjct: 501 ------GKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRLEGKFDIQEYVYGDQ---- 550

Query: 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHG 579
             L+ +   +    + +K   H     + S +N                       +S  
Sbjct: 551 --LRLRQILWNLTGNGIKFTNHGEVVLSVSQEN-----------------------ISKN 585

Query: 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
           N         + I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I KQL
Sbjct: 586 N---------ISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQL 636

Query: 640 VELMGGRLTVTSKVHCGSTFTFILPYQV 667
           VEL GG L + SK   GS FTF + Y +
Sbjct: 637 VELQGGTLNLESKEGFGSKFTFAITYDI 664



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 23/140 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KIL+ EDN+ N ++ +  +K+LG+   VV NG E +  +Q   +DLILMD+ MP +DG++
Sbjct: 695  KILVAEDNETNCLLIERALKKLGYDPVVVRNGREVIEKMQLDFFDLILMDIHMPEVDGIE 754

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ IRS +    +                         IIA+TA+ +  + E   + GM
Sbjct: 755  ATKWIRSQKQNAEFPI-----------------------IIALTADVIESNKEIYISKGM 791

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            +  ++KP+    LK+ L+ +
Sbjct: 792  NDCLTKPLDLPLLKKSLDFW 811


>gi|304309810|ref|YP_003809408.1| two-component sensor histdine kinase [gamma proteobacterium HdN1]
 gi|301795543|emb|CBL43741.1| Putative two-component sensor histdine kinase [gamma
           proteobacterium HdN1]
          Length = 816

 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 97/147 (65%), Gaps = 4/147 (2%)

Query: 369 RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           RAK Q LA MSHEIR+P+ GV+ MA++L  TKLD +Q+Q L ++++SG  +L +INDILD
Sbjct: 416 RAKSQFLAQMSHEIRTPMNGVIGMADLLRQTKLDVQQKQYLDIIVNSGRTLLTIINDILD 475

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
            SK+ +G M LE      +++V+  +Q     + +K + L+ D  +     + GD  R+R
Sbjct: 476 FSKIAAGKMDLEIRPIDFKQIVRECIQLFTLPAEEKAIYLKKDWKEGASPIIYGDSTRLR 535

Query: 487 QILTNLISNAIKFTPEGKVGIKLYVVP 513
           Q+LTNL+SNA+KFT +G  GI L V P
Sbjct: 536 QVLTNLLSNALKFTEKG--GITLRVKP 560



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 23/149 (15%)

Query: 855  KPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN--YDLILMDVC 912
            +P P+  +L+ EDN +N  V   M+K+LG   D+  NG EAV      N  YDL+ MD  
Sbjct: 684  EPLPERYVLVAEDNLVNQKVIGVMLKKLGMRFDIAENGKEAVLKYMEANSPYDLVFMDCE 743

Query: 913  MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            MP MDG +A + IRS+E      A                     +P++A++A+ + E  
Sbjct: 744  MPEMDGYQAAKEIRSYEHAKGMAA---------------------VPVVALSAHVMDEHL 782

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            +    +GM+  ++KP+T   L+  L +Y 
Sbjct: 783  QAVKDSGMNDALAKPLTLDTLECTLRRYL 811



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%)

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
           +++ +V DTGIGI       LF  + Q  A   R++GGTGLGLAI KQLVELMGG + V 
Sbjct: 568 YLQVEVEDTGIGISVENQQRLFSAFSQAEASTTRRFGGTGLGLAISKQLVELMGGEIGVR 627

Query: 651 SKVHCGSTFTFILPYQ 666
           S+   GS F F L  Q
Sbjct: 628 SEEGVGSIFWFTLRAQ 643


>gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii Ech703]
 gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703]
          Length = 934

 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 107/166 (64%), Gaps = 2/166 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +++ +   E  L +  +  E+  ++K M LAT+SHE+R+PL G++   ++L    L R+ 
Sbjct: 425 DVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTKSLSRDA 484

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKI 463
            +L+  M +S  L+L++I+DILD SK+ES  +K+E  +F PREV+ H++       ++K 
Sbjct: 485 NRLVEAMQNSSSLLLKIISDILDFSKIESEQLKIEPGRFAPREVINHIISNYLPLVVKKR 544

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L L   I   VP+ ++GD +R++Q+L+NL+SNAIKFT  G + +++
Sbjct: 545 LTLYCYIEPSVPVSILGDAVRLQQVLSNLLSNAIKFTDTGCIVLQV 590



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 26/140 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+V+D+ IN  +    +  LG+ +   N+G++A+  +     D++L DV MP MDG +
Sbjct: 807  RILVVDDHPINRRLLADQLGSLGYQVITANDGLDALDVLSKNPVDIVLTDVNMPNMDGYR 866

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
             T+ +R    T                           P+I +TANAL+E  + C   GM
Sbjct: 867  FTQRLRDMAQT--------------------------FPVIGVTANALAEERQRCLQAGM 900

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D+ +SKPVT + L++ L  Y
Sbjct: 901  DNCLSKPVTLETLQQSLSYY 920


>gi|456876836|gb|EMF91898.1| 7TM diverse intracellular signaling [Leptospira santarosai str.
           ST188]
          Length = 821

 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 144/328 (43%), Gaps = 75/328 (22%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L++EI  ++  E EL +   I E+  + K   LA MSHEIR+P+ GV+ M ++L  TKL+
Sbjct: 409 LKKEIQQRRETEWELIQAKEIAEKASKVKSSFLANMSHEIRTPMNGVLGMVQLLGTTKLN 468

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
            EQ++ + ++  S   +LQ+INDILD SK+E+                            
Sbjct: 469 DEQKEYVKILSVSAKSLLQIINDILDFSKIEA---------------------------- 500

Query: 462 KILMLEGDIADDVPIEVIGDVL-RIRQILTNLISNA-IKFTPEGKVGIKLYVVPEPPFAK 519
                 G I+ D  +  I  VL  I  +L  L     I    EGK  I+ YV  +     
Sbjct: 501 ------GKISLDKEVFSIRSVLDEIHDLLYPLAKQKQIGLRLEGKFDIQEYVYGDQ---- 550

Query: 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHG 579
             L+ +   +    + +K   H     + S +N                       +S  
Sbjct: 551 --LRLRQILWNLTGNGIKFTNHGEVVLSVSQEN-----------------------ISKN 585

Query: 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639
           N         + I   V D+GIGIP      +F  + Q     ARK+GG+GLGL+I KQL
Sbjct: 586 N---------ISIGFSVSDSGIGIPLEKQKQVFDAFSQSDTSTARKFGGSGLGLSITKQL 636

Query: 640 VELMGGRLTVTSKVHCGSTFTFILPYQV 667
           VEL GG L + SK   GS FTF + Y +
Sbjct: 637 VELQGGTLNLESKEGFGSKFTFAITYDI 664



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 23/140 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KIL+ EDN+ N ++ +  +K+LG+   VV NG E +  +Q   +DLILMD+ MP +DG++
Sbjct: 695  KILVAEDNETNCLLIERALKKLGYDPVVVRNGREVIEKMQLDFFDLILMDIHMPEVDGIE 754

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+ IRS +    +                         IIA+TA+ +  + E   + GM
Sbjct: 755  ATKWIRSQKQNAEFPI-----------------------IIALTADVIESNKEIYISKGM 791

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            +  ++KP+    LK+ L+ +
Sbjct: 792  NDCLTKPLDLPLLKKSLDFW 811


>gi|406891406|gb|EKD37040.1| sensory box sensor histidine kinase/response regulator, partial
           [uncultured bacterium]
          Length = 641

 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 33/303 (10%)

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFI---YNHFPSLHEEDILGKTDVEIFSGAGV 273
           L+ ++N    +  N   V+   D +L+ R++   ++H      E+ L     +I     +
Sbjct: 180 LRTSENLYRLLADNVHDVIWTTDADLKPRYVSPSFSHLTGFAREEALSTIYAKI-----I 234

Query: 274 KESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFS----KSGETIGVNYMGMD 329
             S           L  +  + +E+E+  +    I+VE + S     S    G+  +  D
Sbjct: 235 VPSPFLANHAQLPSLAEQLPLHWESEVLTAGGETIWVESIASLLPESSRRCTGIIGVTRD 294

Query: 330 VTDQVRKREKMAKLREE-IAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGV 388
           +T + R   ++   +E+  A  KAK                  + LA MSHE+R+P+ GV
Sbjct: 295 ITSRKRIMNELQAAKEQAFAANKAK-----------------SEFLANMSHEVRTPMNGV 337

Query: 389 VSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448
           + M ++L  T+LD EQ + +   + SG  +L +INDILD +K+E+G + L   +F+ REV
Sbjct: 338 LGMLQLLEMTELDDEQHEYIDTAMESGKSLLTIINDILDYAKIEAGKLPLTPEEFQIREV 397

Query: 449 VKHVLQT--AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVG 506
           ++ ++ +   A +  K+ ++  +++ DVP  ++ D +RIRQIL N++ NA+KFT  G++ 
Sbjct: 398 IRTLINSFRTAVNPHKVKLI-AEVSPDVPEFLVADHIRIRQILYNIVGNAVKFTERGEIR 456

Query: 507 IKL 509
           I L
Sbjct: 457 ISL 459



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 46/78 (58%)

Query: 586 LEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG 645
           +E  V + C + DTGIG+P+N    LF  + Q+ +   +K  GTGLGL+I KQLV LM G
Sbjct: 466 VENKVQLTCSIADTGIGVPDNIGDKLFEPFTQIESPRQKKIKGTGLGLSIVKQLVLLMNG 525

Query: 646 RLTVTSKVHCGSTFTFIL 663
            + +      G+T TF L
Sbjct: 526 TVNLQRNSAGGTTVTFTL 543



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 3/96 (3%)

Query: 838 DRISQSPSSSSAEVPE---TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
           DR S     +S   P    T P  +   L+VED +IN  + ++++ +LGH   V  NG  
Sbjct: 546 DRGSGQSVKNSLAAPTPILTSPSRRLSALIVEDEQINQQILQAILLKLGHRPTVAENGYA 605

Query: 895 AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFED 930
           A+  ++ +++D++LMDV MP +DGL+ TR+IR+  D
Sbjct: 606 ALDLLESRHFDIVLMDVQMPELDGLETTRIIRNSHD 641


>gi|373952037|ref|ZP_09611997.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|373888637|gb|EHQ24534.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 822

 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 99/157 (63%), Gaps = 4/157 (2%)

Query: 356 ELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISS 414
           EL++   I +E  +AK   LA MSHEIR+P+ GV+ M  +L +T L  EQ+  +  +  S
Sbjct: 292 ELDEKRKIADEQNQAKSAFLANMSHEIRTPMNGVIGMTSLLISTSLTDEQQDYVETIRIS 351

Query: 415 GDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIAD 472
           G+ +L LINDILD SK+ESG M+LE   F    V++    L T  A  +K L L   I  
Sbjct: 352 GETLLSLINDILDFSKIESGKMELETQPFSLTSVIEETYDLLTVKAD-EKGLDLLYLIDA 410

Query: 473 DVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           DVP E+IGDV R+RQIL NL+SN IKFT +G++ I +
Sbjct: 411 DVPSEIIGDVTRLRQILVNLVSNGIKFTEKGEILISI 447



 Score =  109 bits (272), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 22/141 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            IL+ EDN IN  + +  +++LG   D+V NG+E +HAV+ +NYDLILMDV MP MDG +A
Sbjct: 698  ILIAEDNDINQKLVRRALEKLGLLSDLVFNGLEVLHAVEQKNYDLILMDVQMPEMDGYEA 757

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TRL+R       +++A+                  R  IIAMTANAL+   E   + GMD
Sbjct: 758  TRLVRK-----KYESAS-----------------MRPVIIAMTANALTGDKERAMSEGMD 795

Query: 982  SFVSKPVTFQKLKECLEQYFP 1002
             ++SKP     LKE ++Q+FP
Sbjct: 796  DYISKPFKIHDLKEKIDQWFP 816



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           ++  V D+GIGIP++    LF+ + QV +   RK+GGTGLGLAI ++LVE M G +   S
Sbjct: 459 LQFSVKDSGIGIPQDKFHRLFQSFSQVDSSTTRKHGGTGLGLAISQRLVEAMQGSIRAES 518

Query: 652 KVHCGSTFTFILPYQVS 668
           K   GS F F +  + S
Sbjct: 519 KYGEGSCFIFTIKVEAS 535



 Score = 42.7 bits (99), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 39/67 (58%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           K L+++DN  N+ + K   +       + N+  +A  A++ +++DL ++D+ MP  DG+ 
Sbjct: 556 KALILDDNLTNLKILKKQFEYWEMDASIFNHHEQAFQAMRNEHFDLAIIDMFMPEKDGID 615

Query: 921 ATRLIRS 927
             RLI+S
Sbjct: 616 VARLIKS 622


>gi|330507655|ref|YP_004384083.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP6]
 gi|328928463|gb|AEB68265.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP6]
          Length = 1202

 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/257 (34%), Positives = 137/257 (53%), Gaps = 29/257 (11%)

Query: 285 EKGLPAKREITFETELFGSKTFLIY--VEPVFSKSGETIGVNYMGMDVTDQ-----VRKR 337
           EKG P +  +T+     GS+T  ++   + +F  SG+ + +     D+T++     VRKR
Sbjct: 716 EKGTPFR--LTYRINA-GSETKWVWEHGQGIFDASGKLLALEGFIHDITERKLAEDVRKR 772

Query: 338 ----------EKMA-------KLREEIAVQKAKETELNKTIHITEETMRA-KQMLATMSH 379
                     E+ A        L EE+   K  E +L +     +   R+  + LA MSH
Sbjct: 773 TQEELEMRVSERTAWLLRINRALNEEMLEHKETEKKLLQAQQAADAASRSMGEFLAYMSH 832

Query: 380 EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
           EIR+P+  V+ +A +L  T L  EQR  +  + SSGD +L +INDILD SK+  G MKLE
Sbjct: 833 EIRTPMNSVIGLAGLLLETNLSPEQRDYVQTIHSSGDALLSIINDILDFSKINEGKMKLE 892

Query: 440 AAKFRPREVV-KHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
              F  R+ + + +   AA + +K L +   + D VP  V+GD +R++QIL NL+ NA+K
Sbjct: 893 LEPFSLRKCIDRSINMVAAKAAEKGLEMGFYLDDLVPQTVVGDSVRLQQILVNLLGNAVK 952

Query: 499 FTPEGKVGIKLYVVPEP 515
           FT  G V +++ +  EP
Sbjct: 953 FTERGMVSLEVKMGDEP 969



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 76/138 (55%), Gaps = 24/138 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KILL EDN +N+ VA  M+ +LG+  DVV+NG EAV A+  ++YD++LMDV MP MDGL+
Sbjct: 1079 KILLAEDNPVNMKVALLMLNKLGYKADVVSNGEEAVQALSHKHYDVVLMDVQMPKMDGLE 1138

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR I                           +   R  I+AMTA AL    + C   GM
Sbjct: 1139 ATRAILDM------------------------DLVDRPRILAMTAYALEGDRKRCLDAGM 1174

Query: 981  DSFVSKPVTFQKLKECLE 998
            D ++SKPV   +L+  L+
Sbjct: 1175 DGYISKPVQIDELRAALQ 1192



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 9/142 (6%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGI ++ +  LF  + QV A  +RKYGGTGLGLAI + LVE MGGR+ V S++  
Sbjct: 976  VTDTGIGISKSDMKKLFHSFSQVDASTSRKYGGTGLGLAISRMLVEQMGGRIWVESEMGS 1035

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTS 715
            GSTF F +      +EE+S   DD S+          +  G+ +   R L  L + +   
Sbjct: 1036 GSTFHFQI-----KVEESSG--DDASNRILAGKRISAIKPGYQEVDHRDLKILLAEDNPV 1088

Query: 716  RSKK--LLPNSIGFASAHKVNG 735
              K   L+ N +G+ +    NG
Sbjct: 1089 NMKVALLMLNKLGYKADVVSNG 1110



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 4/116 (3%)

Query: 220 ADNFLHFVLQNAPVVMGHQDKELRYRFI-YNHFPSLHEEDILGKTDVEIFSGAGVKESQD 278
            +  L  ++ + P  +  QD+ LRY ++ +   P +     LGKTD +IFS A     + 
Sbjct: 58  GNTLLDDLISDNPCCLFLQDRGLRYTWLSFERPPGMDGLLALGKTDEDIFSPAEADRQRR 117

Query: 279 FKREVLEKGLPAKREITFETELFGSKTFLIYV-EPVFSKSGETIGVNYMGMDVTDQ 333
            K  V+E G PA+ E+    +  G + +L YV  P   + G T+GV     DVT++
Sbjct: 118 IKERVIETGNPARGEVHISKD--GMEQYLDYVYYPWQDEDGRTLGVAGCIKDVTER 171


>gi|374299296|ref|YP_005050935.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552232|gb|EGJ49276.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 510

 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/190 (40%), Positives = 112/190 (58%), Gaps = 14/190 (7%)

Query: 323 VNYMGMDVTDQVRKR-EKMA----KLREEIAVQKAKETELNKTIHITEETMRAKQ-MLAT 376
           +  +  ++ D+VR R + +A    +LR EI  ++  ET +       E   RAK   LA 
Sbjct: 279 LRILNTELEDRVRARTQDLAAANQQLRMEIEERRLAETRV-------EAANRAKSDFLAN 331

Query: 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
           MSHEIR+P+ G++ M E++  T  + + R  LG++  SG  +L +INDILDLSK+E+G  
Sbjct: 332 MSHEIRTPMNGILGMTELILLTTTEPKTRTHLGMIKQSGHALLDIINDILDLSKIEAGKT 391

Query: 437 KLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
           +LE   FRPR+VV   +     + + K L L   + D VP   IGD  R+RQILTN+I N
Sbjct: 392 ELENQMFRPRDVVASTVDLLGVNARGKGLRLAFRLDDRVPKHTIGDEGRLRQILTNIIGN 451

Query: 496 AIKFTPEGKV 505
           A+KFT +G V
Sbjct: 452 AVKFTEQGSV 461


>gi|86136340|ref|ZP_01054919.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85827214|gb|EAQ47410.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 536

 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 138/268 (51%), Gaps = 31/268 (11%)

Query: 251 FPSLHEEDILGKTDVEIFSGAG--------VKESQDFKREVLEKGLPAKREITFETELFG 302
           F  + +E   GK+ +EIF G+            ++  K++  E  LPA +         G
Sbjct: 43  FTKIPQEGWYGKSALEIFGGSTGERALAIHTSVARSAKKKTYEINLPAVQ---------G 93

Query: 303 SKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
           ++     + PVF  +G+   + +M     D   +RE+ A L E   + K K  E NK   
Sbjct: 94  TRHIRTTMTPVFDSTGK---LTHMVGSTEDVTSERERDAAL-ELTRIAKEKAEEANKA-- 147

Query: 363 ITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
                   ++ LA MSHEIR+P+ G++ + E+L  T+LD+EQ      + +S + +L++I
Sbjct: 148 -------KERFLANMSHEIRTPMNGILGICELLKETELDKEQSLFADTIFNSTNALLEII 200

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHV-LQTAAASLQKILMLEGDIADDVPIEVIGD 481
           ND+LD S++ +  + L    F  R +++ + +  +A +  K L    +  ++VP   IGD
Sbjct: 201 NDVLDFSQITADKISLHPEPFSLRVLIEEIAVLLSAKTAYKGLKFNVNYPENVPSLFIGD 260

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGIKL 509
           V ++RQIL NLI NAIKFT EG V I +
Sbjct: 261 VSKVRQILLNLIGNAIKFTDEGHVSITV 288



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 67/138 (48%), Gaps = 23/138 (16%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +IL+ EDNK N +V + M+   G  +    NG  A+ A     YDLILMD+ MPVM GL+
Sbjct: 417 QILVAEDNKTNQLVVEKMLNTSGADLHFAENGALALEAYLASKYDLILMDLSMPVMGGLE 476

Query: 921 ATRLIRSFE-DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
           A + IR  E DTG                        +  IIA+TANA     + C   G
Sbjct: 477 AVQRIRQHENDTGR----------------------TKCRIIALTANAQKSDMKACSEIG 514

Query: 980 MDSFVSKPVTFQKLKECL 997
           M+ F+SKP    +L  CL
Sbjct: 515 MNGFLSKPFRKSELLACL 532



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           ++ ++ DTG GI  + L T+F  + +VS        GTGLGLAI + LVE MGG ++V S
Sbjct: 299 LQFEIADTGCGIEASKLGTIFSAFERVSGTQKNLSEGTGLGLAISQALVERMGGEISVKS 358

Query: 652 KVHCGSTFTFILPYQ 666
               G+TF   L  +
Sbjct: 359 TPDLGTTFRVSLALE 373


>gi|385330529|ref|YP_005884480.1| multi-sensor hybrid histidine kinase [Marinobacter adhaerens HP15]
 gi|311693679|gb|ADP96552.1| multi-sensor hybrid histidine kinase [Marinobacter adhaerens HP15]
          Length = 957

 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           LRE +   + +  EL+       E  R K + LA MSHEIR+PL G++   E+L  + L 
Sbjct: 264 LRETLETIEIQNIELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLP 323

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL-QTAAASL 460
           R+QR  L  +  S +++L +INDILD SK+E+G + L+   F+ R++V+ V+   A A+ 
Sbjct: 324 RQQRDHLSTIRKSSEILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAH 383

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            K L L   + +DVP  ++GD LR++Q++TNL++NAIKFT  G+V ++
Sbjct: 384 AKNLDLVPLVYNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTGEVVLR 431



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 52/79 (65%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V +R  + D+G+G+      +LF  + Q  A  AR+YGGTGLGLAI K+LVE MGG++ +
Sbjct: 444 VTLRLSITDSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGL 503

Query: 650 TSKVHCGSTFTFILPYQVS 668
            S++  GSTF F L  +++
Sbjct: 504 ESELGKGSTFWFTLTSELA 522



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 23/141 (16%)

Query: 860  PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
            P++L V+DN  N+ +  ++++      +  ++G EA+   + + +DL+ MD+ MP MDG+
Sbjct: 682  PRVLAVDDNDANLKLVMTLLEDCQLDAESASSGFEALSKARQKPFDLVFMDLQMPGMDGV 741

Query: 920  KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            + T  +R   DTGN                       R PIIA+TA+AL++  E     G
Sbjct: 742  ETTARLREM-DTGN----------------------HRTPIIALTAHALADEQERLTKQG 778

Query: 980  MDSFVSKPVTFQKLKECLEQY 1000
             D ++ KP++  +L + + +Y
Sbjct: 779  FDGYMPKPISSGQLNDIIHEY 799


>gi|374298744|ref|YP_005050383.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551680|gb|EGJ48724.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 840

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 151/315 (47%), Gaps = 32/315 (10%)

Query: 206 QSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFI------YNHFPSLHEEDI 259
           Q    EEL  +L+R   + +   +N+P ++    +++RY +I          P  H   I
Sbjct: 301 QRRKAEEL--LLRREQEYRNLA-ENSPDIIARIGRDMRYLYINPAGGRIRGAPPAH---I 354

Query: 260 LGKTDVEI-FSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSG 318
           +GKT  ++ ++    K ++     +   G     E  F + L GS+ F   + P   K G
Sbjct: 355 IGKTVYQLGYTHEFSKRAEKRVARLFSTGKEETFEYEFSSSLTGSRIFQARIVPERDKHG 414

Query: 319 ETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATM 377
           +      +  D+TD                  K  E+EL       EE  R K Q LA M
Sbjct: 415 DVESALIISRDITDL-----------------KLMESELKAAKEAAEEANRTKSQFLANM 457

Query: 378 SHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMK 437
           SHEIR+P+ G++ M E+   +  + +    LG+   S   +L +INDILDL+K+ESG ++
Sbjct: 458 SHEIRTPMNGIIGMTELALASCANVDCSTYLGMARKSARNLLGIINDILDLAKIESGKVE 517

Query: 438 LEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNA 496
           +E   F  R  ++ +  T A   + K L  +  I  +VP+ + GD  R+ Q+ TNLI NA
Sbjct: 518 IEEYAFDARASLEALFATMALDAERKGLRFDARIDANVPVRLKGDERRLLQVFTNLIGNA 577

Query: 497 IKFTPEGKVGIKLYV 511
           +KFT EG + +K+ V
Sbjct: 578 VKFTLEGGIAVKVLV 592



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 22/156 (14%)

Query: 844 PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
           P      VP+   +P+ KILL ED++IN ++A S++++ GH +  V NG EA+ A+Q + 
Sbjct: 695 PEPQIQAVPQPSIEPR-KILLAEDDQINQILAMSLLERRGHKVTAVENGREAIEALQREC 753

Query: 904 YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
           +DL+LMD  MP MDG +ATR+IR          +   G++            K IPIIA+
Sbjct: 754 FDLVLMDARMPEMDGEEATRIIRE---------STPPGVD------------KNIPIIAL 792

Query: 964 TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
           TA AL    E   A GMD +++KP+  ++L + L +
Sbjct: 793 TAYALKGDRERFLAAGMDDYIAKPLDLEELDKVLAK 828



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 59/104 (56%), Gaps = 2/104 (1%)

Query: 575 PVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLA 634
           PVS G        A V +   V DTGIGIP + +  +F  + QV      K+ GTGLGL+
Sbjct: 595 PVSLGLLESCPDPAAVCLFASVSDTGIGIPADQIGRIFESFAQVGGLAHLKFDGTGLGLS 654

Query: 635 ICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPD 678
           I K+LVELMGG+L V S+   GSTFTF +   + P E    +P+
Sbjct: 655 ISKRLVELMGGKLWVESEPGKGSTFTFAV--MLKPAEAARPEPE 696


>gi|358381468|gb|EHK19143.1| hypothetical protein TRIVIDRAFT_50684 [Trichoderma virens Gv29-8]
          Length = 1309

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 109/181 (60%), Gaps = 9/181 (4%)

Query: 328 MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTG 387
           MDVT+   + E    LRE+    K K   +       E T    Q LA MSHEIR+P+TG
Sbjct: 704 MDVTELKIRGEA---LREQ---SKEKRRAMANEAAAKEATRLKSQFLANMSHEIRTPITG 757

Query: 388 VVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447
           V+ MAE+LS+ +L +EQR+ +  + SS   +L +INDILD SKVESG + +E  +F    
Sbjct: 758 VLGMAELLSDMELSKEQREYVDNIQSSATSLLTVINDILDFSKVESGRLDIEEVQFSLSH 817

Query: 448 VVKHVLQTAAASLQ-KILMLEGDIADDVPIE--VIGDVLRIRQILTNLISNAIKFTPEGK 504
           +V+ V +    +++ K L    D+  D+  E  V+GD  R+RQI+TNL++N+IKFT +G 
Sbjct: 818 IVQDVRKMLKFAVERKNLDFRSDVGKDIANERVVLGDPGRLRQIITNLLTNSIKFTNQGY 877

Query: 505 V 505
           V
Sbjct: 878 V 878



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 27/165 (16%)

Query: 842  QSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA----VH 897
            ++P  +  E+P ++ + +  IL+VEDN +N  +A   + +LG  +    NG EA    + 
Sbjct: 1029 RTPPPAEQELPLSE-RSRLHILVVEDNPVNQKIATRTIGKLGFQVSATWNGKEALDYMIG 1087

Query: 898  AVQCQNY--DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955
            A + QN   D+ILMDV MP++DG K T L+R                   +P        
Sbjct: 1088 ASKGQNKMPDIILMDVQMPIIDGYKCTHLLR-----------------HHLP---YKTLV 1127

Query: 956  KRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            + +PI+AMTA+A+    E+C   GMD ++ KPVT + L++ L ++
Sbjct: 1128 QNVPIVAMTASAIHGDREKCTRAGMDDYLPKPVTMKVLEKMLIRW 1172



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 50/77 (64%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           T+ +R  + D+GIGI ++    LF+ + Q     ARK+GGTGLGL ICK L++LM GR+ 
Sbjct: 891 TIEVRFVIEDSGIGIEDDVRKKLFKPFSQGDPSTARKFGGTGLGLTICKNLLDLMNGRIK 950

Query: 649 VTSKVHCGSTFTFILPY 665
           + S V  G+  TF +P+
Sbjct: 951 LESNVGSGTKATFWIPF 967


>gi|428769506|ref|YP_007161296.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
           10605]
 gi|428683785|gb|AFZ53252.1| multi-sensor hybrid histidine kinase [Cyanobacterium aponinum PCC
           10605]
          Length = 1390

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 107/172 (62%), Gaps = 10/172 (5%)

Query: 342 KLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKL 400
           K+R E  +Q AKE          E+  +AK + LATMSHEIR+P+  V+ M  +L +T L
Sbjct: 693 KIRAEQELQLAKEQ--------AEKANQAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPL 744

Query: 401 DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-AS 459
           + EQR+   ++ +S D +L +INDILD SK+ESG ++LE        V++  L   A  +
Sbjct: 745 NNEQREFAEIIRTSADSLLTIINDILDFSKIESGKLELEYQPLSIINVIEESLDLLAPKA 804

Query: 460 LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
           + K + L   IA D+P  ++GDV R+RQIL NL++NA+KFT EG++ + + V
Sbjct: 805 INKGIELIYFIAPDIPKTIMGDVTRLRQILVNLLNNAVKFTNEGEIVVSVGV 856



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 87/140 (62%), Gaps = 21/140 (15%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KIL+ EDN +N  V  +++K+LG+  DVV NG+E +  +  Q+YDLILMDV MP MDGL 
Sbjct: 1127 KILIAEDNIVNQKVITNILKRLGYRADVVANGLEVMETLNRQSYDLILMDVQMPEMDGLT 1186

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP--IIAMTANALSESAEECFAN 978
            ATR IR+      W++          P+S    +F+ IP  IIAMTANA+    E C A 
Sbjct: 1187 ATRQIRTL-----WNS----------PNS----NFQGIPPYIIAMTANAMEGDREICLAA 1227

Query: 979  GMDSFVSKPVTFQKLKECLE 998
            GMD ++SKPV  +KL E L+
Sbjct: 1228 GMDDYLSKPVRVEKLMEKLK 1247



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 54/99 (54%), Gaps = 17/99 (17%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK--- 652
           V DTGIGIP + +  LF+ + QV A   R YGGTGLGLAIC +LV +MGG++ V SK   
Sbjct: 874 VKDTGIGIPSSRMNKLFKPFSQVDASTTRHYGGTGLGLAICNRLVTMMGGQIWVESKGVI 933

Query: 653 --------------VHCGSTFTFILPYQVSPIEENSDDP 677
                            GS F+F +  +VS    N ++P
Sbjct: 934 AGDFPSSYQPNSSLSDLGSIFSFTINTKVSSWLVNQENP 972



 Score = 40.8 bits (94), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLK 920
            IL+V+DN+IN  V       LG    +  +G EA+ A++  Q  DL ++D+ MP MDGL 
Sbjct: 983  ILIVDDNEINRQVLMIQCHNLGMKTIITASGREALLALKNEQKPDLAVLDMQMPGMDGLT 1042

Query: 921  ATRLIR 926
              + IR
Sbjct: 1043 LAKQIR 1048


>gi|427429041|ref|ZP_18919078.1| Multi-sensor Hybrid Histidine Kinase [Caenispirillum salinarum AK4]
 gi|425881115|gb|EKV29807.1| Multi-sensor Hybrid Histidine Kinase [Caenispirillum salinarum AK4]
          Length = 1457

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 111/189 (58%), Gaps = 8/189 (4%)

Query: 328  MDVTDQVRKREKMAKLREEIAVQKAKE-TELNKTIHITEETMRA-----KQMLATMSHEI 381
            +D+TD V  R+++   R  +A ++A E  +L   + +  +   A      Q LA MSHE+
Sbjct: 882  VDITDTVTARQELEYSRA-VAEERASEMADLADALEVARQQAEAANQAKSQFLAVMSHEL 940

Query: 382  RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
            R+P+TG++ MA++L  T+L  E  + +  +  S D +L L+ND+LD SK+E+G + LE  
Sbjct: 941  RTPMTGILGMADLLMATELPGEGHRFVSTLKRSADTLLTLLNDVLDFSKIEAGQLVLEEI 1000

Query: 442  KFRPREVVKHVLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFT 500
             FRP E+++ V+Q     + +K L+L     +  P  V GD  R+RQIL NL+ NA+KFT
Sbjct: 1001 DFRPTEIMEDVVQLLNVKASEKGLLLRWQALEAAPEAVRGDPTRLRQILLNLVGNAVKFT 1060

Query: 501  PEGKVGIKL 509
              G V + L
Sbjct: 1061 ERGTVEVDL 1069



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 28/156 (17%)

Query: 849  AEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-----QN 903
            A  PE       ++L+ EDN+ N ++  + + ++GH++D   +G  A+ AV+      Q 
Sbjct: 1173 AATPERASGHPVRVLVAEDNETNRLLLTTGLGRMGHAVDAAEDGAAALAAVRDAVAADQP 1232

Query: 904  YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
            YD++LMD+ MPVMDG +ATR IR+  +                P+ G       +PI+A+
Sbjct: 1233 YDIVLMDMQMPVMDGPEATRAIRALPE----------------PACG-------LPIVAL 1269

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            TA+ LS   E   A G+D +++KP+ +Q+L + +++
Sbjct: 1270 TADLLSSDRERYLAAGLDDYLTKPIDWQRLSDTVDR 1305


>gi|374298740|ref|YP_005050379.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551676|gb|EGJ48720.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 945

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 118/210 (56%), Gaps = 19/210 (9%)

Query: 302 GSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTI 361
           GS      + P +S+ G+   V  +G D+TD +R  +++         ++AKET      
Sbjct: 514 GSLHIQYRLTPEYSEDGQVESVLAIGRDITDLLRLEQEL---------RQAKET------ 558

Query: 362 HITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQ 420
              E   RAK   L+ MSHEIR+PL  + S+ E+L +  +  E    + +   S   +L+
Sbjct: 559 --AESASRAKSTFLSNMSHEIRTPLNSIQSVIELLPSLDISEEAASYVRIAEQSASHLLR 616

Query: 421 LINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVI 479
           LIN++LDLS++ESG  +L    F PR +++ +L+  A +   K L L   +ADDVP+ ++
Sbjct: 617 LINNLLDLSRIESGKTELARKPFEPRHLLQAILRPLAVTAGTKGLDLAVAVADDVPVRLM 676

Query: 480 GDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           GD LR+ QIL NL+ NAIK+T  G++ I +
Sbjct: 677 GDELRLGQILMNLVGNAIKYTDTGRISISV 706



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 80/154 (51%), Gaps = 25/154 (16%)

Query: 845 SSSSAEVPE-TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
           S   A  P+ T P+P  +ILLVEDN IN M+   ++ + GH +   + G EA+ A+ C  
Sbjct: 804 SKQPARTPQSTAPRPL-RILLVEDNLINQMLTSEILSRRGHDVATASGGQEALDALACGR 862

Query: 904 YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
           +D++LMDV MP MDG++ TR IR    TG+             P          +PI+AM
Sbjct: 863 FDVVLMDVNMPGMDGIETTRHIREGR-TGD-------------PG---------VPIVAM 899

Query: 964 TANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
           TA  L E  E     GM+  +SKP    +L++ L
Sbjct: 900 TAFGLDEDRERFLQAGMNEHISKPFAMAELEKVL 933



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 40/73 (54%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI ++    +F  +  V           GLGL I  QLVE MGGR+ V S++  
Sbjct: 725 VKDTGIGIHQDRCEHIFEGFRHVLDLDRPSSESAGLGLQISTQLVEQMGGRIWVESELGQ 784

Query: 656 GSTFTFILPYQVS 668
           GSTF F +  +V+
Sbjct: 785 GSTFCFTVVLEVA 797


>gi|354583746|ref|ZP_09002644.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus lactis 154]
 gi|353197626|gb|EHB63107.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus lactis 154]
          Length = 648

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 95/147 (64%), Gaps = 2/147 (1%)

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           E+T +AK + LA MSHEIR+P+ GV+ M +++ +T LD EQR+ + ++  SG  +L +IN
Sbjct: 259 EKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILDTDLDEEQREYVQIIKKSGTTLLNIIN 318

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDV 482
           DILD SK+ESG  +L    F  R  +   +      +L+K + +   +A DV  +V GD+
Sbjct: 319 DILDFSKIESGRTELSEETFSLRNTLSETMNLMLPKALEKNIEVTTSVAPDVQDQVYGDM 378

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKL 509
            ++RQ+L NL+SNA+KFTP G V + +
Sbjct: 379 TKLRQVLMNLLSNAVKFTPTGSVSVSV 405



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 85/140 (60%), Gaps = 23/140 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KIL+VEDN++N +V K ++++LG+S + V NG+EAV A +   YDLI MD+ MP MDG++
Sbjct: 518  KILIVEDNEVNQLVLKKIIEKLGYSSETVPNGLEAVEAYKKYPYDLIFMDIQMPFMDGME 577

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            A R+I+                 Q+ P+       KR  ++A+TA+A+    E+  A GM
Sbjct: 578  AARIIK-----------------QSAPAD------KRPYVVAVTAHAIKGDREKYLAMGM 614

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D +VSKPV+ Q + + ++ +
Sbjct: 615  DEYVSKPVSMQAVSDVIDIF 634



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 572 PGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGL 631
           P   VS   S  + +  +  I+  V DTGIG+P   +P LF  + QV     R+  GTGL
Sbjct: 397 PTGSVSVSVSCIQSIHGSGLIQFSVTDTGIGVPSEKVPQLFEPFYQVDHYMTRQVEGTGL 456

Query: 632 GLAICKQLVELMGGRLTV-TSKVHCGSTFTFI--LPYQVSPIEENSDDPDDLSDMADQDS 688
           GLAICK+LVELMGG +    +    GS FTF   L Y +  + E  ++P    D AD ++
Sbjct: 457 GLAICKKLVELMGGEIWYEPNPKQTGSVFTFTVQLKYPLVAVNEGEENPVQELDDADGNA 516


>gi|320104436|ref|YP_004180027.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319751718|gb|ADV63478.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1011

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 154/326 (47%), Gaps = 43/326 (13%)

Query: 351 KAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDR-EQRQLL 408
           K  +  L ++   +E+ MRA+   LA +SHEIR+PLT ++   + L  + + R E  +  
Sbjct: 511 KRTQAILERSRWASEQAMRARSDHLAQLSHEIRTPLTAILGNVDRLVESDIPRDEAERAR 570

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLE 467
             +I SG  +  L+ ++LD +K+E+G + +  +   P  +V  V+  T+ A+++K + L 
Sbjct: 571 QTLIRSGRHLSHLLANVLDFAKIEAGGLDIHWSDANPHAIVADVVMLTSHAAMEKGIRLA 630

Query: 468 GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSK 527
             + + VP  +  D LR++QI+TNL++NAIK+TP G               +  L+   +
Sbjct: 631 HLVEETVPETIRTDPLRVQQIVTNLVTNAIKYTPPG--------------GEVTLRVIHR 676

Query: 528 AYQSATDAVKEEK--HQPKSQT--ASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMD 583
              S  D  + E   H P+++T  AS                      P +      S D
Sbjct: 677 VAVSDPDTTESEHLGHPPETETVFASFSTSI-----------------PSSRWETTTSED 719

Query: 584 EDLEATV---WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYG--GTGLGLAICKQ 638
              E TV   W+   V DTG+GI  + LP +F  + QV+A+        G GLGL I + 
Sbjct: 720 SGAEPTVERGWVVVQVRDTGVGIAADQLPRVFEPFSQVAAERGSGTAPVGYGLGLHIART 779

Query: 639 LVELMGGRLTVTSKVHCGSTFTFILP 664
           L   + G + V S    GS F   LP
Sbjct: 780 LAHQLDGFIQVRSAPGRGSLFELWLP 805



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 121/275 (44%), Gaps = 35/275 (12%)

Query: 741  YSFPSNNRQKETAPLEDACSVAEVAETLSEPESSF---SHSPEPENETEVSRGKQCHVET 797
            +S  +  R   TAP+     +  +A TL+     F     +P   +  E+     CH   
Sbjct: 754  FSQVAAERGSGTAPVGYGLGL-HIARTLAHQLDGFIQVRSAPGRGSLFELWLPVSCH--- 809

Query: 798  TSWFQNPATESTSHSEANREMIQTSK--TNEP-QKICEMQEKPDRISQSPSSSSAEVPET 854
                Q+P+ ++ S    +  ++ TS   T+ P Q+ C      D   +SPS++ +   E 
Sbjct: 810  ---HQSPSLQAVSSPTTDPIVLPTSSHYTDSPVQENCPNIIVNDHALKSPSATLSR--EE 864

Query: 855  KPKPKPKILLVEDNK-INVMVAKSMMKQLGH-SIDVVNNGVEAVHAVQ-----CQNYDLI 907
                 P+IL+ EDN  +  ++   + + L + +I    NG  A   ++        + L 
Sbjct: 865  DQADAPRILIAEDNDDVREILGYYVRRILPNVTITFAENGRTAWELLKRGRDGPSTFALA 924

Query: 908  LMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967
            L+D+ MP M+G +  R +R +E          A  E +      S H     +IA+TANA
Sbjct: 925  LLDLQMPEMNGDEVARHVRCWE----------ARFEDSTSDHHGSAHLA---MIALTANA 971

Query: 968  LSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
              E   +C   G D +++KP+T  +L+E +++  P
Sbjct: 972  RDEQRLQCLQAGFDDYLTKPITMTRLREAIQRVMP 1006


>gi|242783978|ref|XP_002480294.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218720441|gb|EED19860.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 2394

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 111/184 (60%), Gaps = 7/184 (3%)

Query: 336  KREKMAKLREEIAVQKAK--ETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMA 392
            ++  +A+ RE  A QKAK  E E N  + + E+  RAK + LA +SH++R+P+ GV+ ++
Sbjct: 1855 QKRALAQARE--AEQKAKIAEAEANHNVKLKEDAARAKSVFLANVSHDLRTPMNGVIGLS 1912

Query: 393  EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452
            E+L  TKLD+EQ   +  +    D +L LINDILD SK+E+G MK+       +E ++ V
Sbjct: 1913 ELLKGTKLDKEQDNYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLSLKETIREV 1972

Query: 453  LQTAAASLQKILMLEGDIADDVP--IEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
            ++    + +   +   +  D VP  + V+GD +R+ QI  NL+SN+ KFTP+G V +   
Sbjct: 1973 VRALRYTHRDRGLETIEDLDKVPEDLVVMGDPVRLHQIFMNLLSNSYKFTPKGYVKVSAM 2032

Query: 511  VVPE 514
            VV E
Sbjct: 2033 VVRE 2036



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 27/151 (17%)

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-----YDLILMD 910
            P+ K ++ + EDN IN  +A   ++ LG   +  ++G +AV A++ ++     + ++LMD
Sbjct: 2157 PREKIRVCIAEDNPINQKIAVKFVRGLGLECEAFSDGQQAVDALRQRSKEGRPFHVVLMD 2216

Query: 911  VCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970
            V MPV+DG  ATR IR   D           + QA+             +IAMTA+A+  
Sbjct: 2217 VQMPVLDGYDATREIRKETD---------PNVNQAL-------------VIAMTASAIEG 2254

Query: 971  SAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
              E+C   GM+ +++KPV    L E L+QY 
Sbjct: 2255 DREKCLEAGMNDYLAKPVRSSVLSEMLDQYL 2285



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE-LMGGRLT 648
            V + C V DTGIGIPE     LFR + Q     AR YGG+GLGL+ICK ++E ++GG + 
Sbjct: 2041 VRLECSVADTGIGIPEEHKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGLIW 2100

Query: 649  VTSKVHCGSTFTFILPYQVSP 669
            + S    G+T TF L +Q +P
Sbjct: 2101 LDSTPGVGTTVTFQLVFQRAP 2121


>gi|428212990|ref|YP_007086134.1| PAS domain-containing protein [Oscillatoria acuminata PCC 6304]
 gi|428001371|gb|AFY82214.1| PAS domain S-box [Oscillatoria acuminata PCC 6304]
          Length = 1811

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 160/311 (51%), Gaps = 35/311 (11%)

Query: 213  LSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAG 272
            + Q+ ++    L  ++ NAPV M   D ++RY    N +  L + D+ G++ +       
Sbjct: 1018 IEQVREQERQQLRQIITNAPVAMAMFDTQMRYLAYSNCW--LKDYDLEGQSLLGQSYYQR 1075

Query: 273  VKESQDFK---REVLEKGLPAKREITFETELFGSKTFLIY---VEPVFSKSGETIGVNYM 326
            + E+++ K   +  L+  + ++ E  FE    G+ T L     V+P +    +  GV  +
Sbjct: 1076 LPETENIKAIHQAALQGEVLSRPEEYFE---LGNGTHLYLRWAVQPWYRSEHQIGGVIIV 1132

Query: 327  GMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLT 386
               + + V+ RE+        A+Q ++              M++ Q LA MSHEIR+P+ 
Sbjct: 1133 TQVINELVQAREQ--------ALQASR--------------MKS-QFLANMSHEIRTPMN 1169

Query: 387  GVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446
            GV+ M ++L  T L  +Q+  + ++ +SG  +L LINDILD SK+E+G M+L+  +F   
Sbjct: 1170 GVIGMTDLLLKTPLSSQQQDFVKILKTSGQNLLILINDILDFSKLEAGEMRLDRTEFYLN 1229

Query: 447  EVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
              ++  +   A   Q K L L   +  ++P  +IGD  R+RQ+L NL  NA+KFT EG+V
Sbjct: 1230 SCIEETIDLLATQAQSKRLELLFLVDSEIPPRLIGDPTRLRQVLMNLTGNALKFTEEGEV 1289

Query: 506  GIKLYVVPEPP 516
             ++  +  + P
Sbjct: 1290 VVQASLQIQTP 1300



 Score =  106 bits (264), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 80/149 (53%), Gaps = 23/149 (15%)

Query: 852  PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
            P  +P    KILLVED  IN  V  + +K LG++ D V NG +A+  +  Q+YD++LMD 
Sbjct: 1542 PVLEPVKNLKILLVEDTPINQKVILNQLKVLGYAADCVENGQQALDCLAEQSYDIVLMDC 1601

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MPV+DG K T+++R  E                    GSS H    PIIAMTANA+   
Sbjct: 1602 LMPVLDGYKTTKVVRDRE--------------------GSSRH---TPIIAMTANAMKGD 1638

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             E+C   GMD ++SKPV   +L   L  +
Sbjct: 1639 REKCLEAGMDDYLSKPVDLDQLAAILHHW 1667



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 47/75 (62%)

Query: 595  DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
            +V DTGIGI       LF+ + QV A   RKYGGTGLGLAICKQLV LMGG L V S V 
Sbjct: 1308 EVRDTGIGINAQDQHKLFQSFSQVDASTTRKYGGTGLGLAICKQLVTLMGGELGVESSVG 1367

Query: 655  CGSTFTFILPYQVSP 669
             GS F F   ++  P
Sbjct: 1368 VGSRFWFTATFETVP 1382


>gi|239909089|ref|YP_002955831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798956|dbj|BAH77945.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 975

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 139/268 (51%), Gaps = 21/268 (7%)

Query: 248 YNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFL 307
           ++ +     E+++ +T  E+   A   +     R V   G     E++         TFL
Sbjct: 476 FSAYSGFSREEVIDRTPTELGLWAHPGDRDRIFRAVERDGQVRNLELSMRMRDGRLATFL 535

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEET 367
           +   P+     E  G + + + V   +  R+ M     E A++ AKE+         E  
Sbjct: 536 LSCTPM-----EAYGRHCL-LSVLVDISGRKTM-----EEALRLAKES--------AEAA 576

Query: 368 MRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
            +AK + L+TMSHEIR+P+  ++ M ++L  T+L   Q++ L  +  +G+ ++ L+ DIL
Sbjct: 577 NKAKSRFLSTMSHEIRTPMNTILGMVDVLRGTELSGRQQEFLRTLEVAGESLMALLTDIL 636

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRI 485
           +LSK+ESGV++L  A + P E+   V+   +   Q K L L  +   D P + +GD  RI
Sbjct: 637 ELSKIESGVLELAEAAYDPLELAGQVVALLSPQAQAKGLTLRLEAGKDAPRQAVGDPDRI 696

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVP 513
           RQIL NL+ NAIKFT  G+V +KL ++P
Sbjct: 697 RQILINLVGNAIKFTAAGEVALKLSLLP 724



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 42/69 (60%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP      +F+ + QV +   R YGGTGLGLAIC  LV+ M GRL + S+   
Sbjct: 736 VSDTGIGIPPEKREAIFKPFTQVDSSTTRAYGGTGLGLAICALLVDGMNGRLWLESEPGA 795

Query: 656 GSTFTFILP 664
           GS F   LP
Sbjct: 796 GSVFYCALP 804



 Score = 47.8 bits (112), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 21/136 (15%)

Query: 853 ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVC 912
           + +P    ++L+VED++ N  + ++ ++ L  ++   + G +A+   +   YD I+MD+ 
Sbjct: 823 QARPPAGRRLLIVEDSEPNRQIYEAFLEDLPLAVTYAHTGTQALERSERGMYDAIIMDIQ 882

Query: 913 MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
           +P +DGL   + IR  E        A AG                 PI+ +TA A  E +
Sbjct: 883 LPDIDGLTVIQEIRRRE--------AAAGRPPC-------------PILVVTAFAFREES 921

Query: 973 EECFANGMDSFVSKPV 988
                 G    ++KP+
Sbjct: 922 GRAAEAGASDLLTKPI 937


>gi|217969774|ref|YP_002355008.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507101|gb|ACK54112.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1029

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 11/211 (5%)

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEI-AVQKAKETELNKTIHITEE 366
           + + P+  +SG       +  D+T Q R  E++ +  E +  + +++  EL   +     
Sbjct: 440 VTITPIHDESGHITHYVAVKQDITAQRRMEEELLRYHEHLEGLVESRTAELQHALDAANI 499

Query: 367 TMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDI 425
             RAK + L TMSHEIR+P+ GV+ + ++LS+++L  EQ +++G+M  S + +L+LI+DI
Sbjct: 500 ASRAKSEFLTTMSHEIRTPMNGVIGLLDVLSHSQLSTEQVEMVGIMRESAETLLRLIDDI 559

Query: 426 LDLSKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDV 482
           LD S++ESG ++L+       +++  V   LQT A   +K + L   I  DVP  V  D 
Sbjct: 560 LDFSRIESGNLELDVGPASIPDLIARVVGILQTVAN--RKSVRLSTRIDPDVPAVVRTDA 617

Query: 483 LRIRQILTNLISNAIKFTP----EGKVGIKL 509
           LR++QIL NL+ NA+KF+      G+V I++
Sbjct: 618 LRLQQILGNLVGNAVKFSSGLDRPGRVEIRV 648



 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 75/170 (44%), Gaps = 38/170 (22%)

Query: 844  PSSSSAEVPETKPKPKP------------KILLVEDNKINVMVAKSMMKQLGHSIDVVNN 891
            P+ S+A     +P P P            +IL+ EDN IN  V    +  LG   D   +
Sbjct: 741  PARSTALA---RPSPTPPLATPGAGESGRRILVAEDNDINRRVIARQLALLGLQCDTAED 797

Query: 892  GVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951
            G EA+   +   Y L+L D+ MP MDG + T  IRS E  G                   
Sbjct: 798  GFEALERWRQGQYSLLLTDLHMPGMDGYELTARIRSEEAPG------------------- 838

Query: 952  SNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                +R PI+A+TANAL    E C   GMD F+ KPV    L+E L ++ 
Sbjct: 839  ----RRTPIVAVTANALRGEKERCIDAGMDDFILKPVQVAALQEVLARWL 884



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 44/77 (57%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           IR  V D GIGI   A+  +F  + Q  +   R++GG+GLGL+IC +LV +M GR+ V S
Sbjct: 656 IRFMVTDNGIGIAPEAIEKIFDPFSQAESSTTRRFGGSGLGLSICTRLVRMMKGRMEVNS 715

Query: 652 KVHCGSTFTFILPYQVS 668
               GS F   LP   +
Sbjct: 716 LPGRGSRFVVTLPLAAT 732


>gi|444376284|ref|ZP_21175531.1| transcriptional regulator [Enterovibrio sp. AK16]
 gi|443679643|gb|ELT86296.1| transcriptional regulator [Enterovibrio sp. AK16]
          Length = 998

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 109/196 (55%), Gaps = 2/196 (1%)

Query: 316 KSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QML 374
           K+G  I V      +TD+  +         ++  QK  E +L +     E   +AK   L
Sbjct: 414 KAGHNIPVFMSITSITDENSELSHYVAHFFDLTEQKRGEAKLKEMQQAAENANKAKSHFL 473

Query: 375 ATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESG 434
           A MSHEIR+P+ GV+ +  +L  T+LD  Q++L+     SG+L+L +INDILD SK+E+G
Sbjct: 474 AAMSHEIRTPMNGVLGVLGLLKETELDDLQKKLVKTARESGELLLAIINDILDFSKMEAG 533

Query: 435 VMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493
            + LE   F   ++ +H +       + K L L   IAD VP  ++GD  R+RQIL NL+
Sbjct: 534 KLSLEDNPFNMYDLFEHTVDIVYPQAENKNLQLTSRIADGVPKYLVGDGDRVRQILLNLL 593

Query: 494 SNAIKFTPEGKVGIKL 509
           SNA+K+T  G V I L
Sbjct: 594 SNAVKYTNTGTVNINL 609



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 23/158 (14%)

Query: 845  SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
            S S  ++  T      +IL+ EDN  N +V ++MM+  G S+D+V+NGVEAV AV    Y
Sbjct: 707  SKSKQDINPTNISDNLRILVAEDNPANQIVLRTMMEFSGISVDIVSNGVEAVEAVSRIPY 766

Query: 905  DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
            D++LMD+ MP MDG++AT+ IR+                            K + I+A+T
Sbjct: 767  DIVLMDISMPHMDGMEATKRIRAMNTPA-----------------------KDVVIVALT 803

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            A+AL    E     GMD FVSKP T Q + +CL ++ P
Sbjct: 804  AHALRGDREHFIELGMDDFVSKPFTRQSILDCLNRWQP 841



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 9/103 (8%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           +V ++ DV DTGIGI +  +PTLF ++    A ++R + G+GLGLAIC+QLV  M G+++
Sbjct: 618 SVQLQVDVKDTGIGIDQKHIPTLFEEFTMAQATYSRTHEGSGLGLAICRQLVSQMNGQIS 677

Query: 649 VTSKVHCGSTFTFILPYQVSPIEENSD---------DPDDLSD 682
           V S+V  GSTFTF +   ++  +E+ +         +P ++SD
Sbjct: 678 VISEVGKGSTFTFTIELAIADEQESGEVTSKSKQDINPTNISD 720


>gi|329890253|ref|ZP_08268596.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
 gi|328845554|gb|EGF95118.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
          Length = 839

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 103/161 (63%), Gaps = 2/161 (1%)

Query: 350 QKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
           Q+ +   L K     E   RAK + LA MSHEIR+PL GVV+MAE+L+   L    R+L+
Sbjct: 439 QRRQSRRLKKAQLHAEAANRAKSEFLANMSHEIRTPLNGVVAMAEVLTTRDLPERDRELV 498

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLE 467
            ++ SSG  + +L++DILD++++ESG + ++ A F   +V + V+   A  +L K + L 
Sbjct: 499 DIIRSSGVTLERLLSDILDVARIESGQVAIDPAPFDLEQVTRDVVALWAPLALGKGVELR 558

Query: 468 GDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            D    +P  VIGD +R+RQ+LTNLISNA+KFT EG V ++
Sbjct: 559 LDYDPTLPRLVIGDAVRLRQVLTNLISNALKFTQEGAVTLE 599



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 23/141 (16%)

Query: 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
           P++LL +D+  N  V + M++ LG ++  V +G +A+ A +   +DL+LMD+ MPVMDGL
Sbjct: 710 PRVLLADDHPANRKVVEVMLEPLGIALTTVEDGAQALAAFREGGFDLVLMDMQMPVMDGL 769

Query: 920 KATRLIRSFE-DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            AT  +R+ E  TG            A P+          PI+ +TANA+SE  E     
Sbjct: 770 TATAEMRAHERRTG------------AEPT----------PILMLTANAMSEHVEASRRA 807

Query: 979 GMDSFVSKPVTFQKLKECLEQ 999
           G D  ++KP++   L   + +
Sbjct: 808 GADGHLTKPLSVAGLTRAVAE 828



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTGIG        +F ++ Q      R++GG+GLGLAI   LV LMGG L   S
Sbjct: 608 VRFTVTDTGIGFDAEFKSRIFHRFQQEDGSITRQFGGSGLGLAISDDLVRLMGGELDCES 667

Query: 652 KVHCGSTFTFILPYQVSPIEENSDD 676
               G+ F F LP  + P+E   D+
Sbjct: 668 PPQGGARFWFDLP--LPPVEGAEDE 690


>gi|94264256|ref|ZP_01288050.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455301|gb|EAT05508.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 404

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/141 (47%), Positives = 93/141 (65%), Gaps = 5/141 (3%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ GV+ MA +L    L  EQR    ++ISSG  +L+LIN ILD SK+
Sbjct: 173 EFLANMSHEIRTPMNGVIGMASLLLAEDLSDEQRSYAQIIISSGQALLELINQILDFSKI 232

Query: 432 ESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQI 488
           E+G ++L+   F PRE+V+ V   LQ  AA+ Q I  L  +++  VP  V GD +R+RQ+
Sbjct: 233 EAGRLELDCRPFSPRELVQEVAVLLQPQAAA-QNI-TLTSEVSPGVPAVVEGDPVRLRQV 290

Query: 489 LTNLISNAIKFTPEGKVGIKL 509
           L NL+ NAIKFT  G V ++L
Sbjct: 291 LLNLVGNAIKFTEIGGVAMEL 311



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 50/71 (70%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGIP   L  LF+++ QV     RKYGGTGLGLAIC++L+ELMGG + V S+   
Sbjct: 329 VKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVESEEGK 388

Query: 656 GSTFTFILPYQ 666
           GSTF F +P +
Sbjct: 389 GSTFWFTVPLR 399


>gi|442610467|ref|ZP_21025189.1| putative two-component hybrid sensor and regulator
           [Pseudoalteromonas luteoviolacea B = ATCC 29581]
 gi|441747989|emb|CCQ11251.1| putative two-component hybrid sensor and regulator
           [Pseudoalteromonas luteoviolacea B = ATCC 29581]
          Length = 916

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 159/309 (51%), Gaps = 28/309 (9%)

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLH---EEDILGKTDVEIFSGAGV 273
           L+++  ++  +  +APV++ + D  LR RF    + ++    EE ++GK+  ++FS A +
Sbjct: 258 LEQSRKYIDDITLHAPVMLAYIDHTLRIRFANQRYQTMLCPVEEPVIGKSVEQVFSPALL 317

Query: 274 KESQDFKREVLEKGLPAKREITFETELFGSKTF---LIYVE----PVFSKSGETIGVNYM 326
           ++   +  + L     + +   FE  L    T    ++++     P   KS E  G    
Sbjct: 318 EQFVPYFNDAL-----SGKNAFFEVVLNADNTSEHQIVHLRVTHIPRLDKSNEVEGFFVC 372

Query: 327 GMDVTDQVRKREKMAKLREEI-----AVQKAKETELNKTIHITEETMRAKQMLATMSHEI 381
             D++   R  EK+A    E+     A+++AKE            +M     LATMSHEI
Sbjct: 373 LEDISILKRSEEKLAHFAGEMEFQNWALEEAKE-------QAEHASMAKADFLATMSHEI 425

Query: 382 RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
           R+P+ GV+ M  +L    L   Q Q + V  SS  L++++INDILD SK+ESG ++L+  
Sbjct: 426 RTPMNGVLGMLSLLGEEPLSETQAQQVEVASSSAHLLMRIINDILDFSKIESGKLELDIT 485

Query: 442 KFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFT 500
            F   +++K    + A  + +K + L  D  +     V  D +RI+QI+TNLI NAIKFT
Sbjct: 486 HFDLIKLMKETCSSQALRAHEKSVELILDTTELTIQFVNSDTVRIQQIVTNLIGNAIKFT 545

Query: 501 PEGKVGIKL 509
            +G+V + L
Sbjct: 546 KQGEVIVSL 554



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 26/179 (14%)

Query: 826  EPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHS 885
            +P   C++     +   +P+     + ++KP    KIL+V+D  +N +V   M+  L   
Sbjct: 756  KPISACDLLNTLVKSKTNPALQDESI-DSKPAAPKKILVVDDTPVNQLVVSKMLASLNTE 814

Query: 886  IDVVNNGVEAVH-AVQCQN--YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGI 942
            I    NG EA++  ++ +N  +DLILMD  MPVMDG +AT+ IR+               
Sbjct: 815  IAFAANGEEAINKLLEAENTPFDLILMDCLMPVMDGYEATKQIRA--------------- 859

Query: 943  EQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                   G     + I I+AMTANA+S   E+C A GM+ +VSKP+    L E + + +
Sbjct: 860  -------GRVPQSQDITIVAMTANAMSGDKEKCLAVGMNDYVSKPINKDVLIETVHRAY 911



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 49/71 (69%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGI  N L  +F ++ Q  +   R++GGTGLGL+I ++L +L+GG++ V S++  
Sbjct: 570 VKDSGIGIAANKLDVIFEQFSQADSSTTRQFGGTGLGLSIVRRLCDLLGGKIWVESEIGL 629

Query: 656 GSTFTFILPYQ 666
           GSTF  +LP Q
Sbjct: 630 GSTFNVLLPIQ 640


>gi|240142104|ref|YP_002966614.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens
           AM1]
 gi|240012048|gb|ACS43273.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens
           AM1]
          Length = 970

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 19/186 (10%)

Query: 334 VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMA 392
           V +RE+ A+     A++ AKE          E   RAK + +ATMSHEIR+PL GV+ MA
Sbjct: 463 VTERERTAR-----ALETAKEA--------AEAGNRAKTEFVATMSHEIRTPLNGVLGMA 509

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452
            +LS+T LD  QR  +G +   GD +L +++DILD SK+E+G + LE   F   EV + V
Sbjct: 510 SLLSDTPLDDRQRHYVGTIRRCGDALLSIVDDILDFSKLEAGRIDLEHIPFETSEVARSV 569

Query: 453 ---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
              L+  AA     +    D+  D P    GD  R+RQ+L NL+ NA+KFT EG + I+ 
Sbjct: 570 SDILEPKAAEKGLAITYSEDV--DFPKRSCGDPNRLRQVLWNLVGNALKFTDEGWISIEA 627

Query: 510 YVVPEP 515
            VV  P
Sbjct: 628 TVVKGP 633



 Score = 97.1 bits (240), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 83/157 (52%), Gaps = 27/157 (17%)

Query: 844 PSSS---SAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
           PSSS   +A+  +  P  + +IL+VEDN IN  VA +++ +LGH + + + G EA+  ++
Sbjct: 714 PSSSDQEAAQAEDALPAGR-RILVVEDNGINQEVAHALLTKLGHDVVLASGGPEALERIR 772

Query: 901 CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
              +DL+LMD+ MP+MDG +  R IR                        S+     +PI
Sbjct: 773 EGRFDLVLMDLNMPLMDGYETARAIRE-----------------------SAGENAEVPI 809

Query: 961 IAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
           +A TA+A  E+ E C A GM  FVSKP    +LK  L
Sbjct: 810 VATTADASLEARERCLAAGMQGFVSKPFDIARLKAAL 846



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 4/85 (4%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTGIGIPE A   LFR++ Q     +R++GGTGLGLAI +++VE  GG L V S
Sbjct: 638 LRYSVSDTGIGIPEEARHRLFRQFEQTDPSVSRRFGGTGLGLAIVRRIVEAFGGELGVVS 697

Query: 652 KVHCGSTFTFILPYQVSPIEENSDD 676
           +   GSTF F +P+    +E +S D
Sbjct: 698 ETGKGSTFWFEIPH----VEPSSSD 718


>gi|86750960|ref|YP_487456.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86573988|gb|ABD08545.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 879

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 92/138 (66%), Gaps = 1/138 (0%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            +A MSHEIR+P+  V+ +A  L  T+LD +QR+ +  +  +GD +L++++DILD SK+E
Sbjct: 339 FVAMMSHEIRTPMNAVLGLANNLLETRLDADQRRAVVGIHDAGDNLLEILDDILDFSKLE 398

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G + LE   F P  +V+H L      ++ K L +  DI+DD+P  +IGD  RIRQ+L N
Sbjct: 399 AGRLSLELIPFSPHNIVEHSLSMIGPRAIAKGLAIGTDISDDLPRALIGDPGRIRQVLLN 458

Query: 492 LISNAIKFTPEGKVGIKL 509
           L+SNA+KFT  GK+ + L
Sbjct: 459 LLSNAVKFTSSGKIVVAL 476



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 23/142 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+V+DN  N  VA  M+ +     D   +G EAV A    +YD ILMD+ MP MDGL+
Sbjct: 593  RLLIVDDNPTNRAVAGQMLSEFAIQCDTACDGAEAVTAATRFSYDAILMDMRMPEMDGLE 652

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR IR+                              +PIIA TANA +E  + C   GM
Sbjct: 653  ATRAIRA-----------------------KGGALATVPIIAFTANAFAEDEKACREAGM 689

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            +  ++KPV    L   + +  P
Sbjct: 690  NDHIAKPVRKNVLVGAILRALP 711



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 49/77 (63%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I+  V DTGIGI  + + +LF  ++Q      R++GG+GLGLAI ++L+E MGGR+ VTS
Sbjct: 488 IQWTVSDTGIGIDPDKIESLFSDFVQADNSIRRRFGGSGLGLAISRRLIEQMGGRINVTS 547

Query: 652 KVHCGSTFTFILPYQVS 668
               GS F F L   V+
Sbjct: 548 TPGQGSAFRFTLTLPVT 564


>gi|406877818|gb|EKD26935.1| hypothetical protein ACD_79C00965G0003 [uncultured bacterium]
          Length = 835

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 107/165 (64%), Gaps = 2/165 (1%)

Query: 354 ETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMI 412
           ETEL K     +E+ + K + LA ++HE+R+P+ G++ M E++ +  L  EQ + L +  
Sbjct: 310 ETELLKANSQIKESNKIKYEFLANITHELRTPMNGIIGMTELVLSMDLADEQMEYLNLAK 369

Query: 413 SSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV-LQTAAASLQKILMLEGDIA 471
           +S   +L +INDILD SK+++G +KLE + F  +E++ ++ L  +  + QK + +   ++
Sbjct: 370 TSAYQLLDIINDILDFSKIQAGKLKLEQSHFDIKELIYNITLPLSEKAKQKNVSINVSLS 429

Query: 472 DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
           D +P  ++GD+ R+RQI+ NLI NAIKFTP G++ I   ++P+P 
Sbjct: 430 DQIPKFLLGDISRVRQIIFNLIDNAIKFTPSGEINITCGIIPQPA 474



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 22/132 (16%)

Query: 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
           K    I++ ED+  N ++   ++KQ G +I   +NG E ++ ++    DLILMD+ MP M
Sbjct: 713 KNSVNIMIAEDDYTNKVLLIKLIKQEGFNILSADNGKEVLNTIEISKTDLILMDIRMPEM 772

Query: 917 DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
           DG+ AT +IR  E +                        K IPIIA+T+    E  EEC 
Sbjct: 773 DGIIATTIIREKEKSSK----------------------KHIPIIAITSKDKPEDKEECL 810

Query: 977 ANGMDSFVSKPV 988
           + G D ++SKP+
Sbjct: 811 SAGFDYYMSKPI 822



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI       +F  + Q      R++GGTGLGLAI   L++LMGG++   S    
Sbjct: 484 VQDTGIGISRENQTKIFEAFTQADGSLTRQFGGTGLGLAISSYLIKLMGGKIWFKSAPGI 543

Query: 656 GSTFTFILPYQ 666
           GSTF F +P Q
Sbjct: 544 GSTFEFTIPLQ 554



 Score = 40.4 bits (93), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 28/130 (21%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           KIL+++ N  N    KS++     ++   NN   A+  ++   YDLI+MD  +  M+G  
Sbjct: 575 KILIIDRNSQNAEHIKSLISGWVLTVQSANNSRTALEILKNDKYDLIIMDTILDEMNGFD 634

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK--RIPIIAMTANALSESAEECFAN 978
              LI                          +N FK  RIPI+ ++++ +   + +C   
Sbjct: 635 LAELI--------------------------NNEFKELRIPIMMISSSGVRGDSLKCSDL 668

Query: 979 GMDSFVSKPV 988
            +++++++P+
Sbjct: 669 QIEAYLTRPI 678


>gi|310796718|gb|EFQ32179.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 1990

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 94/143 (65%), Gaps = 2/143 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + +L +IN
Sbjct: 1323 KEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTVLNEEQRDYTNTIQTSANSLLMIIN 1382

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSKV++G+MKL+   F  R +++ V +  +  ++ K L L   + +DVP  V GD 
Sbjct: 1383 DILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIVEEDVPAWVKGDK 1442

Query: 483  LRIRQILTNLISNAIKFTPEGKV 505
            +RIRQ+L N+I NAIKFT EG+V
Sbjct: 1443 VRIRQVLLNVIGNAIKFTTEGEV 1465



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 24/144 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMPVMD 917
            K+LLVEDN +N  V +  +K++G  ++V  +GVE    V  ++   Y LIL D+ MP  D
Sbjct: 1868 KVLLVEDNPVNQKVLQKYLKKVGVDVEVAADGVECTDMVLARSHNYYSLILCDLHMPRKD 1927

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +A R IR +E         E G             FK++PIIA++AN +S+  ++C A
Sbjct: 1928 GYQACREIRQWER--------ERG-------------FKKLPIIALSANVMSDVHDKCVA 1966

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             G   +V+KPV F  L   + ++F
Sbjct: 1967 AGFSDYVTKPVDFIDLSRAMSKFF 1990



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 19/118 (16%)

Query: 579  GNSMDEDLEATVWIRCDVY-------------------DTGIGIPENALPTLFRKYMQVS 619
            GN++    E  V+ RC VY                   DTG G  +     +F+ + Q+ 
Sbjct: 1454 GNAIKFTTEGEVFSRCRVYKDGASSNLDNEIVLEFAIIDTGRGFTKEEADLIFKPFSQID 1513

Query: 620  ADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
                R++GG+GLGL I +QLVEL GG++  ++    GSTFTF   + +   E++ D P
Sbjct: 1514 GSSTRQHGGSGLGLVISRQLVELHGGKMEGSAVPGKGSTFTFTAKFALPTKEDHPDAP 1571


>gi|121705968|ref|XP_001271247.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
 gi|119399393|gb|EAW09821.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
          Length = 1943

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 105/165 (63%), Gaps = 2/165 (1%)

Query: 346  EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
            +I  +K  E ELN+ +      M +K +  + MSHEIR+PL G++     + +T+LD +Q
Sbjct: 1214 DINDRKNLERELNRAMQQLNHQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQLDTDQ 1273

Query: 405  RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKI 463
            R++L  + +S   + +L+++ILD+S+VE+G M L  + F  R V++ V+ T ++ +L K 
Sbjct: 1274 RRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSLVNSWFHVRSVIEDVIDTVSSRALDKG 1333

Query: 464  LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
            L L   +  DVP  VIGD  RIRQ+L NL+ NA+KFT +G+V I+
Sbjct: 1334 LELNYLMDVDVPPMVIGDRFRIRQVLINLVGNAVKFTAQGEVYIR 1378



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 24/140 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNG---VEAVHAVQCQNYDLILMDVCMPVMD 917
            +ILLVED++ N MV    + ++    +   NG    E V + +   Y LI+ D+ MPV +
Sbjct: 1793 RILLVEDDETNRMVMMKYLDKIKVMAETAANGQECTEMVFSKEPGYYSLIICDIQMPVKN 1852

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +  R IR++E                       NH+ +IPI+A++ANA+++  E    
Sbjct: 1853 GYETCREIRTWE---------------------LKNHYPQIPIMALSANAMTDQIENAAR 1891

Query: 978  NGMDSFVSKPVTFQKLKECL 997
             G + +V+KP+    L + +
Sbjct: 1892 AGFNDYVTKPIKHNDLGKMM 1911



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 27/170 (15%)

Query: 579  GNSMDEDLEATVWIRC-------------------DVYDTGIGIPENALPTLFRKYMQVS 619
            GN++    +  V+IRC                   DV DTG G        L +++ Q+ 
Sbjct: 1364 GNAVKFTAQGEVYIRCSMYCDVSVPLKETELMLNFDVVDTGKGFSARDSERLMQRFSQLG 1423

Query: 620  ADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDD 679
             + +++  G+GLGL + KQLVE+ GGRLT +SK   G+ F+F +     P   +++DP  
Sbjct: 1424 ENASQQNAGSGLGLFLSKQLVEMHGGRLTPSSKEGQGAKFSFFVKVDAPP-PPSAEDP-- 1480

Query: 680  LSDMADQDSVTDDVTAGFFQFQPRTLGS-LFSSNGTSRSKKLLPNSIGFA 728
               +  Q S T +      Q +P +L   LF S  ++  K L P  +  A
Sbjct: 1481 --RLVRQSSSTSEAFGA--QPKPDSLQRLLFYSRDSADPKVLEPADLSPA 1526


>gi|394989866|ref|ZP_10382699.1| hypothetical protein SCD_02292 [Sulfuricella denitrificans skB26]
 gi|393791366|dbj|GAB72338.1| hypothetical protein SCD_02292 [Sulfuricella denitrificans skB26]
          Length = 1650

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 116/198 (58%), Gaps = 22/198 (11%)

Query: 321  IGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSH 379
            +GV++   D+TD  RKR + A++    A + A                RAK + LA MSH
Sbjct: 1025 LGVHF---DITD--RKRNEAAQIEARQAAEAAN---------------RAKSEFLANMSH 1064

Query: 380  EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
            EIR+P+  ++ + +++ +T+L   Q+  L    +S   +L ++NDILD SK+E+G M +E
Sbjct: 1065 EIRTPMNAILGLTQLVLDTELTHHQQDFLKKTHASARSLLGILNDILDFSKIEAGHMSIE 1124

Query: 440  AAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
               F  +E ++ V    +A + +K L L  +IA DVP E++GD LR+ Q+LTNL+SNAIK
Sbjct: 1125 QVPFHLQESLEQVADLFSARIEEKKLELILEIAPDVPAEILGDPLRLSQVLTNLVSNAIK 1184

Query: 499  FTPEGKVGIKLYVVPEPP 516
            FT  G++ IK+ V    P
Sbjct: 1185 FTERGEIHIKVEVAEHTP 1202



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 28/168 (16%)

Query: 837  PDRISQSPSSSSAEVPETKPKPKP----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNG 892
            P   +  P S +    +T   P+     ++LLVEDN IN ++A   +++ G S+ +  +G
Sbjct: 1284 PSHNTVQPLSLAGAPADTVASPQGLQGVRVLLVEDNAINRLMAAEFLERRGVSLTLAEHG 1343

Query: 893  VEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952
             EAV  V+ + +D +LMD+ MP+MDGL+A RLIR                   +P     
Sbjct: 1344 GEAVERVKTETFDAVLMDLHMPIMDGLEAARLIRE------------------LPQG--- 1382

Query: 953  NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
               K +PIIAMTA  L E  ++C A GM  F++KP+  + +   L ++
Sbjct: 1383 ---KSLPIIAMTAAVLQEDRDQCAAVGMVDFIAKPIDPEDMIRVLLKW 1427



 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 588  ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
            AT  +R  V DTGIG+       LF+ + Q  +   RKYGGTGLGLAICKQLVELMGG +
Sbjct: 1203 ATQQLRFSVRDTGIGLSSGQAERLFQAFTQADSSTTRKYGGTGLGLAICKQLVELMGGEI 1262

Query: 648  TVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLS 681
            +V+S    GS F F +   V+P   N+  P  L+
Sbjct: 1263 SVSSVEGQGSAFIFTIQAGVAP-SHNTVQPLSLA 1295


>gi|336272173|ref|XP_003350844.1| histidine kinase group protein [Sordaria macrospora k-hell]
 gi|380095008|emb|CCC07510.1| putative histidine kinase group protein [Sordaria macrospora k-hell]
          Length = 2114

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 2/150 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + ++ +IN
Sbjct: 1421 KEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTTLNEEQRDYTNTIQTSANSLIMIIN 1480

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSKV++G+MKL    F  R +++ V +  +  ++ K L L   + +DVP  V GD 
Sbjct: 1481 DILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWVKGDK 1540

Query: 483  LRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            +RIRQ+L N+I NAIKFT EG+V  +  VV
Sbjct: 1541 VRIRQVLLNVIGNAIKFTNEGEVFSRCKVV 1570



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 22/144 (15%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYD---LILMDVCMPVMD 917
            K+LLVEDN +N  V +  +K++G  +++V +GVE    V  + +D   LIL D+ MP  D
Sbjct: 1990 KVLLVEDNLVNQKVLQKYLKKVGVDVELVADGVECTDVVFSRPHDYFSLILCDLHMPRKD 2049

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +A R IR +E  G +                     + +PIIA++AN +S+  ++C  
Sbjct: 2050 GYQACREIREWEAKGKFPG-------------------RPLPIIALSANVMSDVQDKCLQ 2090

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             G + +V+KPV F  L   L ++F
Sbjct: 2091 AGFNDYVTKPVDFINLSNALSKFF 2114



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            E  + +   + DTG G  +     +F+ + Q+     R++GG+GLGL I +QLVEL GG+
Sbjct: 1579 ENEIMLEFSIIDTGRGFTKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGK 1638

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENSDDPD 678
            +  T+    GSTFTF   + + P E  SD+PD
Sbjct: 1639 MDGTAVPGEGSTFTFTARFGL-PTE--SDNPD 1667


>gi|395762839|ref|ZP_10443508.1| multi-sensor hybrid histidine kinase [Janthinobacterium lividum
           PAMC 25724]
          Length = 974

 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 163/320 (50%), Gaps = 50/320 (15%)

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRF---IYNHFPS--------LHEEDILGKTDV 265
           L++++ F+  V  N P ++ +   +LR RF    YN + S        +H  ++LG+   
Sbjct: 97  LEQSERFIRTVTDNLPGMVAYWGADLRCRFANNFYNEWFSRSSAELDGIHMRELLGQKLF 156

Query: 266 EIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSK-----TFLIYVEPVFSKSGET 320
           ++++             V  +G+ A R  +FE +L  +      T+  Y+ P    SG  
Sbjct: 157 DVYA-----------HHV--QGVLAGRPQSFERDLLSATGQVCHTWTNYI-PDIDDSGGV 202

Query: 321 IGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSH 379
            G   +  DV++    + ++ +L E++   + K           E    AK + +A MSH
Sbjct: 203 RGFFVLASDVSELKHTQLRLYELNEQMVRARDK----------AEAASTAKSEFVANMSH 252

Query: 380 EIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLE 439
           EIR+P+  ++ +A +L  + L+R +R  +G +  +   +L ++ND+LD SK+E+G M LE
Sbjct: 253 EIRTPMNAIIGLARLLEESPLERRERSYVGKIQMATQSLLNIVNDVLDFSKIEAGQMMLE 312

Query: 440 AAKFRPREVVKHVLQTAAAS-----LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLIS 494
             +F+   ++  +    A+S     ++ + +L    A  VP E+IGD LR+ QIL NL+ 
Sbjct: 313 QRRFQLERMLDSIGVLLASSAWARGVEPVFVL----APGVPDELIGDALRVEQILINLVG 368

Query: 495 NAIKFTPEGKVGIKLYVVPE 514
           NA+KFT +G+V + + ++ E
Sbjct: 369 NAVKFTSQGEVVLAIAMLAE 388



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 27/184 (14%)

Query: 821  TSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMK 880
             SK   P ++            +PS+     P +      ++LLVEDN+IN  VA+ ++ 
Sbjct: 595  VSKPATPARLLAAVTAVREGRSAPSALPVSTPLSGLLEGMRVLLVEDNEINQEVAQYILL 654

Query: 881  QLGHSIDVVNNGVEAVHAVQCQ--NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938
              G  +DV  NG  AV  +      +D++LMD+ MPVM+G  AT  IR+           
Sbjct: 655  HSGARVDVAANGKLAVDLLTSTPDAWDVVLMDLQMPVMNGYDATLAIRAL---------- 704

Query: 939  EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
                   +P          +PI+AMTANA+ E      ++GM++ V+KP+    + E L 
Sbjct: 705  ------GLPD---------LPIVAMTANAMHEDRLRAISSGMNAHVAKPINVDDMIETLN 749

Query: 999  QYFP 1002
            +  P
Sbjct: 750  RLVP 753



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 588 ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
           A+  +   V DTGIGI       +F  + Q  +  +RKYGGTGLGLAIC+++VELMGG L
Sbjct: 391 ASATLEFSVRDTGIGIGAVEQERIFDAFSQGDSSTSRKYGGTGLGLAICRRMVELMGGNL 450

Query: 648 TVTSKVHCGSTFTFILPY-QVSPIEENSDDPDDLSDMADQDSVTDD 692
           +V S +  GS F F   + +V+P    S  PD  +  A    + DD
Sbjct: 451 SVKSALGEGSDFRFSCRFDKVAP---QSKPPDKSAPTALSLLIIDD 493


>gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
 gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 744

 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 100/162 (61%), Gaps = 2/162 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I  +K  ET L       E+   AK + LAT+SHEIR+P+ G++ MA +LS+T+L  EQ
Sbjct: 213 DITARKRAETALVNARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLLSDTRLSSEQ 272

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKI 463
           R  +  + +S   +L LI D+LD SK+E+G ++LE  +   RE+++ V++  A  +  K 
Sbjct: 273 RTYVAAISTSASALLALIEDLLDYSKIEAGRLELEPQRMAARELIESVIELMAVRAFTKK 332

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           + L   IA  VP  ++ D  R+RQIL NL+ NAIKFT EG V
Sbjct: 333 IGLGCHIAPTVPDTILADPGRLRQILLNLLGNAIKFTDEGGV 374



 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 25/145 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ--CQNYDLILMDVCMPVMDG 918
            K+LL EDN+IN M+A++ + + GHS+ VV+NG  AV  +    +++D++LMD+ MP+MDG
Sbjct: 621  KVLLAEDNEINAMLARATLSKAGHSVAVVSNGRAAVDVLTHPARDFDIVLMDLHMPIMDG 680

Query: 919  LKATRLIRSF-EDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            L A   IR + EDTG                         IPI+ ++A+   ++ +   A
Sbjct: 681  LDAIIQIRRYEEDTG----------------------LAPIPILVLSADGQEKTRQNALA 718

Query: 978  NGMDSFVSKPVTFQKLKECLEQYFP 1002
             G   F++KP+   +L   LE + P
Sbjct: 719  QGATGFITKPLEPGRLLSALEVHTP 743



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 45/69 (65%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG GI +++L  +F+++ Q      RK+GG GLGLAI ++L++ M G +TV S    
Sbjct: 393 VDDTGPGIEKDSLSRIFQEFEQADTSSTRKHGGAGLGLAITRRLIDAMEGTVTVDSAPGE 452

Query: 656 GSTFTFILP 664
           G+TFT  +P
Sbjct: 453 GATFTVYIP 461


>gi|375149380|ref|YP_005011821.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
 gi|361063426|gb|AEW02418.1| multi-sensor hybrid histidine kinase [Niastella koreensis GR20-10]
          Length = 1017

 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 157/307 (51%), Gaps = 26/307 (8%)

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGV 273
           LKR +     ++ N  + +   D E   R++   F       E +++G+   ++F     
Sbjct: 380 LKRQEEKYRSIIANMNLGLIEVDLEQNIRYVNQSFCFMSGYEEHELIGQNASDLFVKEEN 439

Query: 274 KESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQ 333
           KE  + K ++ + GL    E+   T+   S  +L+   P+++   + IG   + +D+T+Q
Sbjct: 440 KEMVENKNDLRQTGLSDAYEMNVNTKHSDSHWWLVSGAPLYNDKQQHIGSIGIHLDITEQ 499

Query: 334 VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMA 392
                            K  + +L +   I E+++ AK + LA MSHEIR+P+  ++ M+
Sbjct: 500 -----------------KMLQRQLEEAKKIAEKSVHAKDLFLANMSHEIRTPMNAILGMS 542

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH- 451
           + L  T L+++Q+  L ++ ++ + +L +INDILD SK+E+G + LE   F   ++V + 
Sbjct: 543 KQLQKTILNQQQQSFLEIIGTAAENLLVIINDILDFSKLEAGKVTLEEIGFNMHDLVTNT 602

Query: 452 --VLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             VL+  A   +K LM E  +   V   + GD  RI Q+L NL+SN+IKFT  G+V ++ 
Sbjct: 603 SRVLKLKAE--EKGLMFEVTVHPGVANVLKGDPYRINQVLMNLLSNSIKFTKRGRVALEC 660

Query: 510 YVVPEPP 516
            +    P
Sbjct: 661 MLYRSKP 667



 Score = 96.3 bits (238), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 32/151 (21%)

Query: 844 PSSSSAEVP-------ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
           P  S +++P       E       KIL+VEDN++N +VA++++ Q G +I    NG++A+
Sbjct: 746 PKGSESDLPKKDNSHVEAHILADKKILVVEDNEMNRIVAETILNQYGATISEAVNGMDAI 805

Query: 897 HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
            A++  ++D++LMD+ MPVMDGL+ATR +R                 Q + S+       
Sbjct: 806 DALRHNHFDIVLMDIQMPVMDGLEATRHVR-----------------QELASN------- 841

Query: 957 RIPIIAMTANALSESAEECFANGMDSFVSKP 987
            IPIIA+TANA+    E+C   GM+ ++SKP
Sbjct: 842 -IPIIALTANAVKGEMEKCIQAGMNDYLSKP 871



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTG G+ E  L  LF K+ Q     AR YGGTGLG++I KQLVELM G + V SK   
Sbjct: 676 ISDTGKGMDEAYLKNLFNKFSQEDESIARSYGGTGLGMSIVKQLVELMNGTIEVQSKKGE 735

Query: 656 GSTFTFILPYQVSPIEENSDDP 677
           G+T T  L +   P    SD P
Sbjct: 736 GTTVTIQLSF---PKGSESDLP 754


>gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
 gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
          Length = 1353

 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)

Query: 369 RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           RAK + LATMSHEIR+P+  V+    +L +T L+ +QR  L  +  +G+ +L +INDILD
Sbjct: 822 RAKSEFLATMSHEIRTPMNAVLGFTNLLLDTPLNEQQRDFLQTLHQAGEALLTIINDILD 881

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIR 486
            SK+ESG + LE   F  RE V+ VL   A+  Q K L L      + P ++ GDV R+R
Sbjct: 882 FSKIESGKLVLEQQPFDVRECVEDVLSLLASKAQEKELELLYTCTPETPAQIKGDVTRLR 941

Query: 487 QILTNLISNAIKFTPEGKVGIKLYVV 512
           QIL NL+ N IKFT EG+V + + V+
Sbjct: 942 QILVNLVGNGIKFTHEGQVAVHVGVL 967



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 78/139 (56%), Gaps = 23/139 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL EDN +N  VA  ++K++G+  DV  NG+E + A+Q + YD+ILMDV MP MDGL+
Sbjct: 1205 RILLAEDNAVNQKVALHILKRMGYRADVAANGLEVLEALQQRPYDVILMDVQMPKMDGLE 1264

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
             T  I        W            P S      +R  IIAMTANAL+   E CFA GM
Sbjct: 1265 TTERI-----CAQW------------PPS------QRPWIIAMTANALAGDRERCFAAGM 1301

Query: 981  DSFVSKPVTFQKLKECLEQ 999
            D ++SKP+  + L   L +
Sbjct: 1302 DDYISKPIKIEALAAALNR 1320



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 50/73 (68%)

Query: 591  WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
            +++  V DTGIGIP + L  LF+ + QV A   R+YGGTGLGL I K+L ELMGG ++V 
Sbjct: 974  FLQFQVQDTGIGIPRDRLDRLFKPFSQVDASTTREYGGTGLGLVISKRLCELMGGDMSVE 1033

Query: 651  SKVHCGSTFTFIL 663
            S    G+TFTF +
Sbjct: 1034 STEGQGTTFTFTI 1046


>gi|28881238|emb|CAD70476.1| related to two-component histidine kinase chk-1 [Neurospora crassa]
          Length = 2177

 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 2/150 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + ++ +IN
Sbjct: 1484 KEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTTLNEEQRDYTNTIQTSANSLIMIIN 1543

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSKV++G+MKL    F  R +++ V +  +  ++ K L L   + +DVP  V GD 
Sbjct: 1544 DILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWVKGDK 1603

Query: 483  LRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            +RIRQ+L N+I NAIKFT EG+V  +  VV
Sbjct: 1604 VRIRQVLLNVIGNAIKFTNEGEVFSRCKVV 1633



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 22/144 (15%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYD---LILMDVCMPVMD 917
            K+LLVEDN +N  V +  +K++G  +++V +GVE    V  + +D   LIL D+ MP  D
Sbjct: 2053 KVLLVEDNLVNQKVLQKYLKKVGVDVELVADGVECTDVVFSRPHDYFSLILCDLHMPRKD 2112

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +A R IR +E  GN+   A                   +PIIA++AN +S+  ++C  
Sbjct: 2113 GYQACREIREWEAKGNFPGRA-------------------LPIIALSANVMSDVQDKCLQ 2153

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             G + +V+KPV F  L   L ++F
Sbjct: 2154 AGFNDYVTKPVDFINLSNALSRFF 2177



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            E  + +   + DTG G  E     +F+ + Q+     R++GG+GLGL I +QLVEL GG+
Sbjct: 1642 ENEIMLEFSIIDTGRGFTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGK 1701

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENSDDPD 678
            +   + +  GSTFTF   + + P E  SD+PD
Sbjct: 1702 MDGKAVLGKGSTFTFTARFGL-PTE--SDNPD 1730


>gi|384920925|ref|ZP_10020922.1| histidine kinase [Citreicella sp. 357]
 gi|384465264|gb|EIE49812.1| histidine kinase [Citreicella sp. 357]
          Length = 902

 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 181/429 (42%), Gaps = 56/429 (13%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            I   V DTGIGI  + +  +F ++ Q   D  R++ GTGLGLAI K+LVE+MGG +   S
Sbjct: 485  IHITVEDTGIGIAADKIDHVFGEFNQADDDCNRQFEGTGLGLAITKRLVEMMGGEVWAQS 544

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDD--VTAGFFQFQPRTLGSLF 709
             +  GS F   +P  V+  E+ S DP  + +      + DD  +T      Q   LG   
Sbjct: 545  DLGLGSCFGLKIPLDVA--EDTSADPVPMPEGLRTVLLIDDHAMTRAILSAQLEGLGLRV 602

Query: 710  SSNGTSR--------------SKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPL 755
            ++  T                S++ LP   G   A ++          P      +   +
Sbjct: 603  TACQTGEDALDKMSEPPDLVISEQDLPELSGLDLARQLGWLVP---DLPLILLSADPQAI 659

Query: 756  EDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEAN 815
             D    A V   L +P             + ++      V   +   +P  +  SH+   
Sbjct: 660  SDDARPAGVHAVLPKPVQRRRLI------SALASLYASSVPVPASGGDPGVD--SHTGPG 711

Query: 816  REMIQTSKTNEPQKICEMQEKPDRISQSPSSSSA--EVPETKPKPKPKILLVEDNKINVM 873
                  S T+ P      + + D  S   S  SA    PET P     ILL EDN+ N +
Sbjct: 712  VAPDAESGTDAPLAFPAFRHR-DMTSGFASVRSAPPSAPETTPARPLDILLAEDNRTNQL 770

Query: 874  VAKSMMKQLGHSIDV--VNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDT 931
            V + M+++L   + +    NG+EA+ A + +  D++ MD+ MP MDG  AT  IR  E  
Sbjct: 771  VFRKMIQKLDVLVKLRFAANGIEALEAYKERRPDIVFMDISMPKMDGKAATHEIRKIESA 830

Query: 932  GNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991
            G              P          +PIIA+TA+A++   +     G+D +++KP+   
Sbjct: 831  GG-------------PC---------VPIIAVTAHAMAGDRDGILEAGLDDYLTKPLRRT 868

Query: 992  KLKECLEQY 1000
            +L   ++++
Sbjct: 869  ELAHLVDKW 877



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 167/350 (47%), Gaps = 47/350 (13%)

Query: 167 TVEYWKQRALDLEKMLEASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHF 226
           T+  W  R + ++    A G      +  L   +T+L +  S VEEL       D F+ +
Sbjct: 164 TIRLWDGRFIKVQDRHMADGG-----VVSLCVDITDLMRMWSAVEELP------DGFVIY 212

Query: 227 VLQNAPVVMGHQDKELRYRFIYNHFPSLHEEDIL--GKTDVEIFSGAGVKESQDFKREVL 284
                 ++     +E+ ++      P    EDIL  G    +     G +E    +R   
Sbjct: 213 DSDERLLMCNGTYREIYHKTAPAIVPGRSFEDILRYGLAQGQHIDAVGREEEWLEERLAS 272

Query: 285 EKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKM--AK 342
            +    ++E     +L   +   IY  P+    G  +G+    +D+TD  R ++++  AK
Sbjct: 273 HRSASTEKE----QQLDDGRWLRIYERPL--SDGGRVGLR---VDITDIKRTQQELEVAK 323

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDR 402
           LR E A  +AK                    LA MSHEIR+P+ GVV MA++L ++ L  
Sbjct: 324 LRAE-AASRAKSA-----------------FLANMSHEIRTPMNGVVGMADLLRDSDLSD 365

Query: 403 EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV---LQTAAAS 459
           EQ+  +  + SSG+ +L +INDILD SK+E+  + L+   F     V  +   LQ AA  
Sbjct: 366 EQKLYVDTIRSSGEALLVIINDILDYSKIEAEKLTLKPELFDLERTVHDIVLLLQPAARE 425

Query: 460 LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
               L+++ D+   +P  V+GD  RIRQILTNLI NA+KFT +G V ++L
Sbjct: 426 KGVELLVDYDMF--LPTSVMGDPGRIRQILTNLIGNAVKFTADGHVMVRL 473


>gi|160898521|ref|YP_001564103.1| histidine kinase [Delftia acidovorans SPH-1]
 gi|160364105|gb|ABX35718.1| histidine kinase [Delftia acidovorans SPH-1]
          Length = 1088

 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/211 (39%), Positives = 123/211 (58%), Gaps = 16/211 (7%)

Query: 310 VEPVFSKSGETIGV-----NYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT 364
           +E + +  G T+ V      Y+G DVT  V           +++ +   E+ L +     
Sbjct: 444 MEQLVTAQGRTLYVAYAPTRYLGQDVTLCVFA---------DVSARAEIESNLERARIAA 494

Query: 365 EETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           +E   AK   LATMSHEIR+PL G +   E+L  T+L + QR+ +  + +S  ++LQ+I+
Sbjct: 495 DEANEAKSTFLATMSHEIRTPLYGALGTLELLGLTELTQLQRKYVDRIEASSSILLQIIS 554

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDV 482
           DILD SK+E+  ++LE A F PRE+V++   + AA + Q  L+L   +   VP  V+GD 
Sbjct: 555 DILDTSKIEADQLQLEKAPFNPRELVQNCTSSYAAMAQQNGLLLFSCVDAQVPESVLGDA 614

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
           +RIRQIL NLISNAIKFT  G V ++L  VP
Sbjct: 615 VRIRQILGNLISNAIKFTEAGHVIVRLRSVP 645



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 26/142 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+ EDN +N +  +  ++ LG  + V ++G EA+       +DL+L DV MP ++G +
Sbjct: 849  RVLVAEDNPVNQVTLRGQLESLGCEVTVADDGEEALALWDISPHDLVLTDVNMPYLNGYE 908

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
                +R+             G+                PI+ +TANA+ +    C   GM
Sbjct: 909  LAERLRA------------EGVA--------------CPIVGVTANAMLDEENRCLDAGM 942

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            ++++ KP+  + L   LE++ P
Sbjct: 943  NAWLVKPIPLRTLVRTLEKFAP 964



 Score = 44.3 bits (103), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTG+GI ++    LF  +  V  + +R   G GLGL+IC  L  +M   + V S+  
Sbjct: 656 EVCDTGVGIEKSLHGELFTPFYLVK-NSSRTARGAGLGLSICWSLARMMSSSIEVWSEPG 714

Query: 655 CGSTFTF 661
            GS F F
Sbjct: 715 LGSRFWF 721


>gi|398840358|ref|ZP_10597594.1| signal transduction histidine kinase [Pseudomonas sp. GM102]
 gi|398110643|gb|EJM00541.1| signal transduction histidine kinase [Pseudomonas sp. GM102]
          Length = 622

 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)

Query: 340 MAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNT 398
           + ++R  +   +  E  LN+  +  E+  R+K + LATMSHEIR+P+ GV+   E+L+ +
Sbjct: 203 LIRMRAHLQQMQINEEVLNQAKNTAEDADRSKTRFLATMSHEIRTPMYGVIGATELLARS 262

Query: 399 KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458
            L+REQ  LL  + +SG  +L LI++ILDL+K+E+G ++L+   F  R +V   ++    
Sbjct: 263 ALNREQSSLLQTINTSGRTLLSLIDNILDLAKIEAGKLELKPRVFEVRALVSSSIEMIRQ 322

Query: 459 SLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           ++Q K ++LE  ++ DVP  V  D   +RQIL NL+ NA+KFT  GKV +
Sbjct: 323 NIQDKPIVLEAQVSPDVPPLVKTDTNCLRQILINLLGNAVKFTEAGKVSL 372



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 27/173 (15%)

Query: 827 PQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSI 886
           P ++  + E P R   S     +   E  P     ILLVE++ ++  VA +M+++LG++ 
Sbjct: 457 PMELFSVSELPIRDDHSSVGFDSSFAEDYPL---DILLVENHPVSQKVAMAMLQELGYAP 513

Query: 887 DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAM 946
           D+ +NG+EAV+       D+I MD+ MPVMDGL+A   IR                    
Sbjct: 514 DLASNGLEAVNQCMTSTPDIIFMDINMPVMDGLEAIHNIRKL------------------ 555

Query: 947 PSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            + G + +     I+A TA+A S   E   A G +  ++KP  FQ L   L++
Sbjct: 556 -ALGDTCY-----IVAFTASAFSSEIERFRAAGANDILTKPANFQALTRVLQR 602



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 49/77 (63%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + DTGIGIP     +LF+ + Q     ++++ G+GLGL+ICK LVE   G L+ TS+   
Sbjct: 389 IRDTGIGIPMERQDSLFKPFAQFKGPASQRFTGSGLGLSICKSLVEAQQGTLSFTSQPGV 448

Query: 656 GSTFTFILPYQVSPIEE 672
           GSTF+F LP ++  + E
Sbjct: 449 GSTFSFSLPMELFSVSE 465


>gi|386848484|ref|YP_006266497.1| two-component hybrid sensor and regulator [Actinoplanes sp.
           SE50/110]
 gi|359835988|gb|AEV84429.1| two-component hybrid sensor and regulator [Actinoplanes sp.
           SE50/110]
          Length = 902

 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 92/163 (56%), Gaps = 29/163 (17%)

Query: 840 ISQSPSSSSAEVPETKPKPKP----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA 895
           +S  P  +    P  +P  KP    +ILL EDN+IN  VA++M+ +LGH +D V +G+EA
Sbjct: 620 LSPQPDGAIPPAPTPQPAVKPVSALRILLAEDNQINQKVAQTMLAKLGHRVDAVADGLEA 679

Query: 896 VHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955
           V A+Q  +YD++LMD+ MPV+DGL ATR IRS                  +P++      
Sbjct: 680 VQAMQRADYDVVLMDMQMPVLDGLDATRRIRS-----------------EIPAT------ 716

Query: 956 KRIP-IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
            R P IIAMTANAL E    C A GMD F++KPV    L   L
Sbjct: 717 -RQPRIIAMTANALQEDRAACQAAGMDDFLAKPVRLADLAAAL 758



 Score =  112 bits (280), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 104/184 (56%), Gaps = 3/184 (1%)

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMA 392
           Q++   ++A++ +  AV  A ET L       +        LATMSHEIR+P+  V+ M 
Sbjct: 225 QIKGTAELAEMAQ--AVTIATETVLAARDEAVQAAKSKSAFLATMSHEIRTPMNAVIGMT 282

Query: 393 EILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452
            +L +T+L  EQR+ +  +  SG+ +L +INDILD SK+ESG ++LE A F  R+ +   
Sbjct: 283 GLLLDTRLTTEQREYVSTVRDSGEALLVIINDILDFSKIESGQLELEDAVFELRDCIDSA 342

Query: 453 LQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
           L      +  K L L   +    P  + GDV R+RQIL NL+SNA+KFT  G+V + +  
Sbjct: 343 LALVTLPAAAKGLELVAQVDPACPRLLRGDVTRLRQILVNLLSNAVKFTAAGEVVVTVGA 402

Query: 512 VPEP 515
             EP
Sbjct: 403 QDEP 406



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 45/74 (60%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP + L  LFR + QV     R YGGTGLGLAI ++L + MGG +TV S    
Sbjct: 418 VRDTGIGIPADRLHRLFRSFSQVDDSTTRLYGGTGLGLAISRRLAQAMGGDITVASTPGV 477

Query: 656 GSTFTFILPYQVSP 669
           GSTFT     +  P
Sbjct: 478 GSTFTTTAVVRACP 491


>gi|336468465|gb|EGO56628.1| hypothetical protein NEUTE1DRAFT_84016 [Neurospora tetrasperma FGSC
            2508]
 gi|350289274|gb|EGZ70499.1| hypothetical protein NEUTE2DRAFT_113301 [Neurospora tetrasperma FGSC
            2509]
          Length = 1951

 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 2/150 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + ++ +IN
Sbjct: 1258 KEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTTLNEEQRDYTNTIQTSANSLIMIIN 1317

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSKV++G+MKL    F  R +++ V +  +  ++ K L L   + +DVP  V GD 
Sbjct: 1318 DILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWVKGDK 1377

Query: 483  LRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            +RIRQ+L N+I NAIKFT EG+V  +  VV
Sbjct: 1378 VRIRQVLLNVIGNAIKFTNEGEVFSRCKVV 1407



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 22/144 (15%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYD---LILMDVCMPVMD 917
            K+LLVEDN +N  V +  +K++G  +++V +GVE    V  + +D   LIL D+ MP  D
Sbjct: 1827 KVLLVEDNLVNQKVLQKYLKKVGVDVELVADGVECTDVVFSRPHDYFSLILCDLHMPRKD 1886

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +A R IR +E  GN+   A                   +PIIA++AN +S+  ++C  
Sbjct: 1887 GYQACREIREWEAKGNFPGRA-------------------LPIIALSANVMSDVQDKCLQ 1927

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             G + +V+KPV F  L   L ++F
Sbjct: 1928 AGFNDYVTKPVDFINLSNALSRFF 1951



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            E  + +   + DTG G  E     +F+ + Q+     R++GG+GLGL I +QLVEL GG+
Sbjct: 1416 ENEIMLEFSIIDTGRGFTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGK 1475

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENSDDPD 678
            +   + +  GSTFTF   + + P E  SD+PD
Sbjct: 1476 MDGKAVLGKGSTFTFTARFGL-PTE--SDNPD 1504


>gi|418294264|ref|ZP_12906160.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            ATCC 14405 = CCUG 16156]
 gi|379065643|gb|EHY78386.1| sensor histidine kinase/response regulator GacS [Pseudomonas stutzeri
            ATCC 14405 = CCUG 16156]
          Length = 906

 Score =  117 bits (293), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 187/410 (45%), Gaps = 59/410 (14%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  V DTGIG+ +  L  LF+ + Q     +R+ GGTGLGL I K+L+E MGG + V S
Sbjct: 424  LRISVQDTGIGLTDQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDS 483

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSS 711
                GS F   L      + +  DD +DL   A                Q R +  L   
Sbjct: 484  IPDEGSEFWISLS-----LPKARDDIEDLPHPA---------------LQGRRIALLEQH 523

Query: 712  NGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSEP 771
                ++ +    S+G     +V+ F        + + Q++ + L D  +V  V     EP
Sbjct: 524  PLARQALQHQLESLGL----EVHTFDSLGQMQEAISAQRQGSQLID-LAVLGVTSREIEP 578

Query: 772  ESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQ-TSKTNEPQKI 830
            E+      E E     + G +C V        P TE   + +   E+   T    +P   
Sbjct: 579  EALGDRLMEIE-----ALGCKCVVLC------PTTEQAHYHDTLPEVHSYTQLQGKPACT 627

Query: 831  CEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVN 890
             ++Q     + + P+ + AE     P    ++L V+DN  N+++ K+++  +G  +  V+
Sbjct: 628  RKLQRVLLELVR-PNQAYAEPAAAAPSRAARVLCVDDNPANLLLVKTLLGDMGAEVVAVD 686

Query: 891  NGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950
            NG+ A+ A +   +DL+LMDV MP MDG + T  IR +E            +E + P   
Sbjct: 687  NGLAALEAAKQHTFDLVLMDVQMPGMDGRQTTEAIRHWEH-----------VEGSTP--- 732

Query: 951  SSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                   +PIIA+TA+AL+        +GMD +++KP++ ++L + + ++
Sbjct: 733  -------LPIIALTAHALANEKRSLLQSGMDDYLTKPISDRQLAQVVLKW 775



 Score =  112 bits (281), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 91/141 (64%), Gaps = 1/141 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+PL G++   ++L  + L   Q+  LG +  S D +L +IN+ILD SK+
Sbjct: 274 EFLANMSHEIRTPLNGILGFTQLLQKSDLTPRQQDYLGTIEQSADSLLGIINEILDFSKI 333

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + L++  F  R++++  L   A A+  K L L   +  D P+ ++GD LR++Q+LT
Sbjct: 334 EAGKLVLDSIPFNLRDLIEDTLTILAPAAHSKQLELVSLVYRDTPLSLVGDPLRLKQVLT 393

Query: 491 NLISNAIKFTPEGKVGIKLYV 511
           NLISNAIKFT EG + ++  V
Sbjct: 394 NLISNAIKFTNEGTIAVRAMV 414


>gi|428319759|ref|YP_007117641.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
            7112]
 gi|428243439|gb|AFZ09225.1| multi-sensor hybrid histidine kinase [Oscillatoria nigro-viridis PCC
            7112]
          Length = 1700

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 106/191 (55%), Gaps = 5/191 (2%)

Query: 340  MAKLREEIAVQKAKETELNKTIHITEETMRAKQM----LATMSHEIRSPLTGVVSMAEIL 395
            + +L  ++A+   + T   +     E  + A +M    LA MSHEIR+P+ GV+ M ++L
Sbjct: 988  LGRLSVQLAIAIQQSTLFEQAQQAREAALEASRMKSLFLANMSHEIRTPMNGVMGMTDLL 1047

Query: 396  SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT 455
              T L  EQ   +  +  SG  +L +INDILDLSK+E+G M+LE  +F     +  VL  
Sbjct: 1048 LKTNLTPEQLDFVQTLKLSGQNLLSIINDILDLSKLEAGEMRLEILEFNLSICMNEVLDL 1107

Query: 456  AAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
             A   Q K + +   I  DVP+++ GD  R+RQILTNLI+NAIKFT  G+V I++     
Sbjct: 1108 LATPAQEKGIEVVALIDSDVPVQIKGDAARLRQILTNLINNAIKFTEAGEVVIEVANASN 1167

Query: 515  PPFAKEGLKQK 525
            P        QK
Sbjct: 1168 PGLLAASENQK 1178



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 15/156 (9%)

Query: 845  SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY 904
            +S+ A   + +     KILLVED  IN  V  + ++ LG + DV NNG EA+  V  + Y
Sbjct: 1428 TSNRASAIDNRELASLKILLVEDTPINQKVGLNQLRVLGCTADVANNGAEALSMVALKKY 1487

Query: 905  DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964
            D++LMD  MPV+DG +ATR +R  E               A  ++G+    ++  +IAMT
Sbjct: 1488 DIVLMDCQMPVLDGYEATRELRRRE---------------AADAAGNMEPHQKTVVIAMT 1532

Query: 965  ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            ANAL    E+C A GMD ++SKP++ +KLK  LE +
Sbjct: 1533 ANALKGDREKCLAAGMDDYISKPISIEKLKSVLENW 1568



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 46/69 (66%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGI       LF+ + QV A   RKYGGTGLGLAI K+LVELMGG++ V S    
Sbjct: 1200 VTDTGIGIAPEDKKKLFQSFTQVDASTTRKYGGTGLGLAISKELVELMGGQIGVESTPGQ 1259

Query: 656  GSTFTFILP 664
            GSTF F +P
Sbjct: 1260 GSTFWFTVP 1268


>gi|254409902|ref|ZP_05023682.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
 gi|196182938|gb|EDX77922.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
          Length = 1258

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 92/139 (66%), Gaps = 2/139 (1%)

Query: 369 RAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           RAK + LATMSHEIR+P+ GV+ M  +L +T+L  +Q++ +  +  SGD +L +INDILD
Sbjct: 546 RAKSEFLATMSHEIRTPMNGVIGMTGLLLDTQLTSQQQEFVTTIRHSGDTLLTIINDILD 605

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
            SK+ESG ++LE   F  +  +++ L   AA +  K L L   I    P  +IGDV R+R
Sbjct: 606 FSKIESGKLELEEVSFDLQVCIENCLDLLAAKASDKNLELAYQITPQTPRMIIGDVTRLR 665

Query: 487 QILTNLISNAIKFTPEGKV 505
           QIL NL+SNA+KFT  G+V
Sbjct: 666 QILVNLLSNAVKFTQSGEV 684



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 82/139 (58%), Gaps = 17/139 (12%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL EDN +N  VA  +++++G+  DV  NG+E + A+Q Q YD++ MDV MP MDGL+
Sbjct: 962  RILLAEDNPVNQQVALHLLQRMGYRADVAGNGLEVLEALQRQPYDVVFMDVQMPEMDGLE 1021

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            A+R  R  ++  + D   ++               +R  IIAMTANA+    E C   GM
Sbjct: 1022 ASR--RICQEWCDLDGKTQS---------------QRPRIIAMTANAMVGDREMCIEAGM 1064

Query: 981  DSFVSKPVTFQKLKECLEQ 999
            D ++SKP+  ++L E L++
Sbjct: 1065 DDYISKPIRIEELVEALKK 1083



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 50/78 (64%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I+  V DTGIGIP   L  LF+ + QV +   RKYGGTGLGLAICKQL E+MGG + V S
Sbjct: 722 IQFAVKDTGIGIPPERLNRLFQPFSQVDSSTTRKYGGTGLGLAICKQLCEMMGGTMWVES 781

Query: 652 KVHCGSTFTFILPYQVSP 669
           +   GSTF F L     P
Sbjct: 782 QEDIGSTFYFTLVVPADP 799


>gi|429213059|ref|ZP_19204224.1| RcsC [Pseudomonas sp. M1]
 gi|428157541|gb|EKX04089.1| RcsC [Pseudomonas sp. M1]
          Length = 1078

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 152/312 (48%), Gaps = 48/312 (15%)

Query: 209 PVEELSQILKRADNFLHFVLQNAPV---VMGHQDKELRYRFIYNHFPSLH---EEDILGK 262
           PV    + L  +D F   ++Q APV   V+ H  ++L      NH  +     E DIL  
Sbjct: 366 PVHRAHRQLVESDTFSRTLIQTAPVALVVLSHDGRKL---VTCNHLAAQWLGDEADILAL 422

Query: 263 TDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIG 322
           T     +G  + ES           +P    I       G +    Y++  F+ +     
Sbjct: 423 T-----AGWNLFESHG--------QVPGGICIQV-----GGR----YLQAAFAAT----- 455

Query: 323 VNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEI 381
             Y G+         E +  +  +I V    E  L       +   +AK + LA+MSHEI
Sbjct: 456 -RYAGV---------EAVLCVFNDITVHCEAEEALASAKRAADAASQAKTLFLASMSHEI 505

Query: 382 RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
           R+PL GV+   E+L  T LD  QR  L  + +S   +LQLI+D+LD+SK+E+G M L  A
Sbjct: 506 RTPLYGVLGTLELLGLTDLDSRQRAYLRTIQNSSSTLLQLISDVLDVSKIEAGQMALNPA 565

Query: 442 KFRPREVVKHVLQTAAAS-LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFT 500
            F P E+V+ VL+  AAS   K L     I   VP +++GD  RIRQIL NL+SNA+KFT
Sbjct: 566 AFNPAELVEEVLRNYAASAAAKGLQFYACIDAGVPAQLLGDAARIRQILNNLVSNALKFT 625

Query: 501 PEGKVGIKLYVV 512
             G+V ++L ++
Sbjct: 626 DIGRVVLRLKLL 637



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 26/136 (19%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           +L+ EDN IN  +    +++LG S+ + ++G EA+     +++D++L DV MP M+G + 
Sbjct: 851 VLVAEDNPINQTLLCEQLEELGCSVSLASDGREALRLFDDRHFDVLLSDVNMPNMNGYEL 910

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
           T+ +R   +T                          +PII +TANAL E  E C A GMD
Sbjct: 911 TQALRGRGET--------------------------LPIIGVTANALREEGERCRAVGMD 944

Query: 982 SFVSKPVTFQKLKECL 997
           +++ KP++ + L + L
Sbjct: 945 AWLVKPISLRTLNDLL 960



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           ++  V DTG GI E     LF  + QV   H     GTGLGL+I  +L E+MGG L V S
Sbjct: 646 LQWQVADTGAGIAEEQQGRLFEAFYQVPGVH--HTSGTGLGLSISWRLAEMMGGSLRVVS 703

Query: 652 KVHCGSTFTFIL 663
           +V  GS+F+ +L
Sbjct: 704 EVGLGSSFSLLL 715


>gi|427701684|ref|YP_007044906.1| signal transduction histidine kinase [Cyanobium gracile PCC 6307]
 gi|427344852|gb|AFY27565.1| signal transduction histidine kinase [Cyanobium gracile PCC 6307]
          Length = 554

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 103/172 (59%), Gaps = 3/172 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDR 402
           L EE+A +  +  +         E M   + L+T+SHEIR+P+  V+ M ++L +T L+ 
Sbjct: 143 LEEEVASRTRQLQKARDEAQAATEAM--GEFLSTISHEIRTPMNAVIGMTDLLLDTPLNG 200

Query: 403 EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAAS-LQ 461
            QR+L+  + SSG+L+L LINDILDLSK+E+  M L A  F  R +V   ++    S L 
Sbjct: 201 AQRELVQTIHSSGELLLCLINDILDLSKIEAQKMTLRADSFSIRALVDECMRIMNPSILS 260

Query: 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
           K L L   I  D+P E+ GD LRIRQIL NL++NA+KFT  G V + L   P
Sbjct: 261 KGLSLGIFIPADLPEELYGDSLRIRQILLNLMNNAVKFTDNGTVQLDLTWNP 312



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 25/144 (17%)

Query: 857  KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            +P  +IL+ +DN+IN  V + M+ +L    + V +G  AV  VQ   +DL+ MD+ MP M
Sbjct: 417  EPSLRILVADDNRINQRVMELMLAKLDAQAEFVGDGHAAVERVQLAEFDLVFMDLQMPGM 476

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DGL+ATR IR                         ++   +  ++A+TA+AL E   +C 
Sbjct: 477  DGLEATRRIR-------------------------ASRVYQPYVVALTASALGEQQRDCL 511

Query: 977  ANGMDSFVSKPVTFQKLKECLEQY 1000
              GM+ F+SKPV    +++ L++Y
Sbjct: 512  TAGMNDFLSKPVRLPDIRQALQRY 535



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 596 VYDTGIGIPENALPTLFRKYMQ--VSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKV 653
           V D+G GI    LP +F  + Q   S +H  +  GTGLGLAIC +L +LMGGR+ V S+ 
Sbjct: 324 VSDSGHGISPEFLPRIFNSFAQDEGSPNHGHRNQGTGLGLAICDRLCKLMGGRIRVESEQ 383

Query: 654 HCGSTFTFILPYQVSPIEE 672
             GS F+  +P     +EE
Sbjct: 384 GKGSRFSVSIPLGFGAMEE 402


>gi|365538837|ref|ZP_09364012.1| signal transduction histidine kinase-like protein [Vibrio ordalii
           ATCC 33509]
          Length = 1273

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 116/204 (56%), Gaps = 19/204 (9%)

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEET 367
           +YV  +    G+ +G   +  D+T+Q++K +++A+ +E+                  E  
Sbjct: 496 LYVGGLIDDYGQLVGFLGIAYDLTEQLQKEKELAEAKEQ-----------------AEYA 538

Query: 368 MRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
            RAK   LA MSHEIR+P+  ++ + ++  NT L  +Q   L    S+   +L L+NDIL
Sbjct: 539 NRAKSDFLANMSHEIRTPMNAILGLLQMTLNTNLSSQQIDYLSKTQSAAKSLLVLLNDIL 598

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRI 485
           D SKVE+G ++LE   F   ++++      ++SLQ K + +  D+A DVP  +IGD LR+
Sbjct: 599 DFSKVEAGKLELEQYSFSLPDLLQETAVLLSSSLQEKDIEIIYDVAPDVPTILIGDSLRL 658

Query: 486 RQILTNLISNAIKFTPEGKVGIKL 509
           RQIL NL SNAIKFT  G++ I +
Sbjct: 659 RQILLNLASNAIKFTNSGEIKISI 682



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 24/126 (19%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILLVEDN  N +VA  +++Q G +I    +G +A+  ++ Q + L+LMD+ MP MDG + 
Sbjct: 934  ILLVEDNPTNRLVATELLRQCGATIIEAEDGFKALDILKNQQFSLVLMDIQMPGMDGYET 993

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            TR IR                 Q M        F ++PI+AMTANA  E      A GM+
Sbjct: 994  TRKIR-----------------QEMK-------FHQLPILAMTANARPEDKATSLAAGMN 1029

Query: 982  SFVSKP 987
              ++KP
Sbjct: 1030 GHIAKP 1035



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 49/75 (65%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIG+ +     +F  + Q  +  +RKYGGTGLGL+I K+LV LM G ++VTS++  
Sbjct: 698 VSDTGIGMTQEQKAIIFNGFSQAESSISRKYGGTGLGLSIVKRLVSLMQGDISVTSQLDK 757

Query: 656 GSTFTFILPYQVSPI 670
           GS FTF +    SP+
Sbjct: 758 GSEFTFTITLNFSPV 772



 Score = 42.4 bits (98), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 5/75 (6%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA---VHAVQCQN--YDLILMDVCMPV 915
           KIL+VEDN+   ++ + ++++LG  +    N  EA   +H +  QN   DL  +D  +P 
Sbjct: 785 KILVVEDNETARLILQDILQKLGCQVFAAPNADEALAQLHHLAQQNEVIDLAFVDWKLPD 844

Query: 916 MDGLKATRLIRSFED 930
           MDGL  TR I++ E+
Sbjct: 845 MDGLALTRSIKNQEN 859


>gi|374996937|ref|YP_004972436.1| signal transduction histidine kinase [Desulfosporosinus orientis
           DSM 765]
 gi|357215303|gb|AET69921.1| signal transduction histidine kinase [Desulfosporosinus orientis
           DSM 765]
          Length = 1261

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 116/190 (61%), Gaps = 8/190 (4%)

Query: 333 QVRKREKMAKLREEIAV------QKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPL 385
           QV K+++  K+R  I V      +K  E EL + +   EE  +AK Q LA MSHEIR+P+
Sbjct: 499 QVIKKDEDGKIRRFIGVLQNITERKRTEEELKRAMEAAEEASQAKSQFLANMSHEIRTPM 558

Query: 386 TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445
             ++ +A +L+ + L   Q+  +  +  +   +L++IND+LD SK+E+G +++E  KF  
Sbjct: 559 NAIMGLAHLLAQSDLKESQQNYVAKIEGASKTLLRIINDVLDFSKIEAGKLEIENIKFNL 618

Query: 446 REVVKHVLQTAAAS-LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK 504
            +V+++V    + S  +K + L  D  + VP  +IGD LR+ Q+L+NLI+NAIKFT  G+
Sbjct: 619 DKVLENVANLYSISAAEKGIDLNFDTGEGVPDVLIGDPLRLEQVLSNLITNAIKFTNRGE 678

Query: 505 VGIKLYVVPE 514
           V + + V+ E
Sbjct: 679 VNVSVKVLGE 688



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/141 (39%), Positives = 78/141 (55%), Gaps = 24/141 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+VEDN IN +VAK M++Q G  + + NNG EA+  V    +  +LMDV MPVMDG K
Sbjct: 933  RVLVVEDNDINQLVAKDMLEQAGMLVSIANNGEEAIKYVHANKFAAVLMDVQMPVMDGYK 992

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT ++R                 +   SS        +PIIAMTANAL    E   A GM
Sbjct: 993  ATEILR-----------------KTYSSS-------ELPIIAMTANALRGDRERSIAAGM 1028

Query: 981  DSFVSKPVTFQKLKECLEQYF 1001
            + ++SKP+   +L + LE++ 
Sbjct: 1029 NDYISKPIDPNRLFDTLEKWL 1049



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 45/71 (63%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGI +  +  LFR + Q      RKYGGTGLGL I KQLVELM G ++V S    
Sbjct: 699 VSDTGIGITKEHIGRLFRAFTQADGSMTRKYGGTGLGLTISKQLVELMNGEISVESVYGE 758

Query: 656 GSTFTFILPYQ 666
           G++F FI+ + 
Sbjct: 759 GTSFHFIVHFH 769


>gi|164428217|ref|XP_956617.2| hypothetical protein NCU01833 [Neurospora crassa OR74A]
 gi|157072058|gb|EAA27381.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1951

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 2/150 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + ++ +IN
Sbjct: 1258 KEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTTLNEEQRDYTNTIQTSANSLIMIIN 1317

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSKV++G+MKL    F  R +++ V +  +  ++ K L L   + +DVP  V GD 
Sbjct: 1318 DILDLSKVDAGMMKLNYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWVKGDK 1377

Query: 483  LRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            +RIRQ+L N+I NAIKFT EG+V  +  VV
Sbjct: 1378 VRIRQVLLNVIGNAIKFTNEGEVFSRCKVV 1407



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 22/144 (15%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYD---LILMDVCMPVMD 917
            K+LLVEDN +N  V +  +K++G  +++V +GVE    V  + +D   LIL D+ MP  D
Sbjct: 1827 KVLLVEDNLVNQKVLQKYLKKVGVDVELVADGVECTDVVFSRPHDYFSLILCDLHMPRKD 1886

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +A R IR +E  GN+   A                   +PIIA++AN +S+  ++C  
Sbjct: 1887 GYQACREIREWEAKGNFPGRA-------------------LPIIALSANVMSDVQDKCLQ 1927

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             G + +V+KPV F  L   L ++F
Sbjct: 1928 AGFNDYVTKPVDFINLSNALSRFF 1951



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            E  + +   + DTG G  E     +F+ + Q+     R++GG+GLGL I +QLVEL GG+
Sbjct: 1416 ENEIMLEFSIIDTGRGFTEEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGK 1475

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENSDDPD 678
            +   + +  GSTFTF   + + P E  SD+PD
Sbjct: 1476 MDGKAVLGKGSTFTFTARFGL-PTE--SDNPD 1504


>gi|189425062|ref|YP_001952239.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi
            SZ]
 gi|189421321|gb|ACD95719.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi
            SZ]
          Length = 1109

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/137 (45%), Positives = 89/137 (64%), Gaps = 1/137 (0%)

Query: 372  QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
            + LA MSHEIR+P+ GVV M  +L  T L  EQ Q L  +  S + +  LI+DILDLSK+
Sbjct: 871  EFLANMSHEIRTPMNGVVGMTHLLRTTDLTPEQEQYLANIEISANSLTTLISDILDLSKI 930

Query: 432  ESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILT 490
            ESG M LE+  F  R  ++ +L +    + QK + +  +IAD++P  +IGD LR RQIL 
Sbjct: 931  ESGKMVLESTAFSLRSCIQDILSSQQFFIQQKAIRVTTEIADELPNTLIGDQLRTRQILL 990

Query: 491  NLISNAIKFTPEGKVGI 507
            N++ NAIKFT +G++ I
Sbjct: 991  NILGNAIKFTEQGQINI 1007


>gi|94263712|ref|ZP_01287520.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455911|gb|EAT06070.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 93/141 (65%), Gaps = 5/141 (3%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ GV+ MA +L    L  EQR    ++ISSG  +L+LIN ILD SK+
Sbjct: 168 EFLANMSHEIRTPMNGVIGMASLLLAEDLSDEQRSYAQIIISSGQALLELINQILDFSKI 227

Query: 432 ESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQI 488
           E+G ++L+   F PRE+++ V   LQ  AA+ Q I  L  +++  VP  V GD +R+RQ+
Sbjct: 228 EAGRLELDCRPFSPRELIQEVAVLLQPQAAA-QNI-TLTSEVSPGVPAVVEGDPVRLRQV 285

Query: 489 LTNLISNAIKFTPEGKVGIKL 509
           L NL+ NAIKFT  G V ++L
Sbjct: 286 LLNLVGNAIKFTEVGGVAMEL 306



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 51/75 (68%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGIP   L  LF+++ QV     RKYGGTGLGLAIC++L+ELMGG + V S+   
Sbjct: 324 VKDSGIGIPVEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVKSEEGK 383

Query: 656 GSTFTFILPYQVSPI 670
           GSTF F +P +   I
Sbjct: 384 GSTFWFTVPLRTHEI 398


>gi|410669241|ref|YP_006921612.1| PAS domain protein [Methanolobus psychrophilus R15]
 gi|409168369|gb|AFV22244.1| PAS domain protein [Methanolobus psychrophilus R15]
          Length = 1200

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 129/231 (55%), Gaps = 20/231 (8%)

Query: 284 LEKGLPAKREITFETELFGSKTFLI--YVEPVFSKSGETIGVNYMGMDVTDQVRKREKMA 341
           +++G+  K E+  E E F  K  +I  Y  PV + +GE +G   +  D+T+  +K  ++ 
Sbjct: 748 IKEGITVKDEL-IEIEAFDQKRRIILNYTAPVLNDNGEMLGAIIVNNDITELKKKEWELL 806

Query: 342 KLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           + +E        ++E                 LATMSHEIR+P+  ++   ++L  T+++
Sbjct: 807 EAKESAEAANIAKSEF----------------LATMSHEIRTPMNAIIGFTDLLLETEIN 850

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461
             QR    ++  SG ++L LI D+LDLSK+++G ++LE   F  + +++ +++T +    
Sbjct: 851 DVQRHYAEIVQRSGGILLNLIEDVLDLSKIDAGKLELEKLDFDLQVLLEGLVKTMSLRAH 910

Query: 462 -KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
            K L L  +I +DVP+ + GD  R+ QILTNL  NAIKFT EG+V I + +
Sbjct: 911 SKGLELSCNIEEDVPLLLQGDPGRLTQILTNLTGNAIKFTMEGEVTIHVSI 961



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 81/139 (58%), Gaps = 21/139 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
            ILLVED+  +  VA+ M+ + G +++ VNNG+EA+ A++   YDL+ MDV MP MDGL+A
Sbjct: 1071 ILLVEDDIYSQKVAQEMLMRDGFNVNAVNNGIEAIKALEIMPYDLVFMDVQMPEMDGLEA 1130

Query: 922  TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            T+ IRS                   P S   N  K IPIIA+TA+A+    E     GMD
Sbjct: 1131 TKHIRS-------------------PDSKVLN--KNIPIIALTAHAMQGDRELFIEAGMD 1169

Query: 982  SFVSKPVTFQKLKECLEQY 1000
             ++SKP+T + L E L ++
Sbjct: 1170 DYMSKPITLKTLGELLGKW 1188



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 51/73 (69%)

Query: 589  TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            TV +R  V DTGIGIPE  +  +F K+ Q  A + R++GG+GLGLAI KQL E+MGG + 
Sbjct: 968  TVMLRFAVTDTGIGIPEEKIDLIFEKFTQADASNTRRFGGSGLGLAISKQLAEMMGGEIG 1027

Query: 649  VTSKVHCGSTFTF 661
            VTS+V  GS F F
Sbjct: 1028 VTSEVGKGSEFWF 1040


>gi|262275765|ref|ZP_06053574.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262219573|gb|EEY70889.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 730

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 195/395 (49%), Gaps = 59/395 (14%)

Query: 158 RVEVDAEYDTVEYWKQRALDLEKMLEASGQREQALMEKLNESVTN-LEKQSSPVEELSQI 216
           R E+DA Y   E  +Q      ++L A+   +  L+E   ES  N L+K++  + EL+  
Sbjct: 23  RKEIDALYAAAEAREQ------QLLAATHAMDDILLEV--ESQRNALKKKNKQLLELNAY 74

Query: 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYN-------------HFPSLHEEDIL-GK 262
           ++  ++ ++ +L    VV+G   +  +   ++              H  SL  +DIL G 
Sbjct: 75  IRSINDAMNSIL----VVVGVDGQVSQTNRVFTEDLHWTEDELPQIHIDSLFPKDILSGI 130

Query: 263 TDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIG 322
            +    S   +  S    R  LE  +P  R     TE      +L+  E  +S  G+  G
Sbjct: 131 REKNGASSGSLVVSYITHRGHLECEMPLHRSNGALTE----AVYLVKGEQFYSHQGKLQG 186

Query: 323 VNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEI 381
           +     D+++ +R+RE +A  + EIA+QKAK           +   +AK   LATMSHEI
Sbjct: 187 ILLTATDISE-LRQRE-VALRQSEIALQKAKAE--------ADAANQAKGDFLATMSHEI 236

Query: 382 RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441
           R+PL  ++   ++  +++L  +QR  L  +  +   +  LIND+LDLSK+E+G +++E  
Sbjct: 237 RTPLNAIIGFTKLCLHSELTLKQRDYLNKVDVASHSLSHLINDVLDLSKIEAGKLEMERV 296

Query: 442 KFRPREV---VKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK 498
            F   +V   V+HV+    A  ++ L     +   VP  VIGD LR++Q+L NL+ NAIK
Sbjct: 297 PFNLNQVLSNVRHVMWFDVA--KRGLTFSMGVEPSVPANVIGDPLRLQQVLVNLVGNAIK 354

Query: 499 FTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSAT 533
           FT +G+V + +             ++KS+A +S T
Sbjct: 355 FTDKGEVSVTVS------------RKKSRARKSVT 377



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 27/163 (16%)

Query: 840  ISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
            +  S   S ++V E + K   ++L+V+DN IN  + + ++  LG  I  V++G EA+ AV
Sbjct: 464  VGTSEELSLSQVSELEGK---QVLVVDDNTINREMIRELLSSLGMVISQVSSGEEAIEAV 520

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
            + Q + LILMD+ M  MDG++AT+ +R   +                   GS      +P
Sbjct: 521  KQQAFSLILMDLRMAGMDGIEATKALRKLPN-------------------GS-----HVP 556

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            +IA++AN  +  AE C   GM+ ++ KP+ F++L + +  +  
Sbjct: 557  VIALSANTSASMAETCTQAGMNDYLPKPIDFRRLIQIIANHLA 599



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIG+ ++ L  LF KY Q     +R++GGTGLGL I ++LV LM GR+ + S +  
Sbjct: 382 VCDTGIGMTDDQLSQLFSKYHQAEPSTSRRFGGTGLGLTISQKLVNLMKGRIHINSALGQ 441

Query: 656 GSTFTFILPYQV 667
           G+   F   + V
Sbjct: 442 GTECEFSAEFGV 453


>gi|126656186|ref|ZP_01727570.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
           activity [Cyanothece sp. CCY0110]
 gi|126622466|gb|EAZ93172.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
           activity [Cyanothece sp. CCY0110]
          Length = 1191

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 155/312 (49%), Gaps = 18/312 (5%)

Query: 210 VEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFP---SLHEEDILGKTDVE 266
           +E++   L +A+  L  +   +PV +   D EL++  I         L  ED LGKT  E
Sbjct: 650 LEKVQHQLHQANAILENLYATSPVGLCLYDHELKFVRINQSLVESYGLEVEDALGKTSSE 709

Query: 267 IFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETI----- 321
           +    G ++ +   R+VLE   P         EL G        E V+S S   +     
Sbjct: 710 VLPELG-RQIEPLLRQVLETNAP-----IISIELRGRTPADPAAEKVWSASYYPVDVLED 763

Query: 322 --GVNYMGMDVTDQVRKREKMAKLREEIAVQK-AKETELNKTIHITEETMRAKQMLATMS 378
             GV  + +D+T++    + + +   ++  QK A E  +              + LA MS
Sbjct: 764 QCGVGGVMIDITERTHAEDSLRESEAQLIQQKEALEDAIAIAQAADFANQAKSEFLANMS 823

Query: 379 HEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKL 438
           HEIR+P+  +   +++L  ++L+ +QR  + ++ ++ + +L LINDILD SK+E+  + L
Sbjct: 824 HEIRTPMNSICGFSDLLLRSQLNPKQRHWIEILQANSNRLLALINDILDFSKIEARKLHL 883

Query: 439 EAAKFRPREVVKHV-LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAI 497
              +F    +++ V       + +K L L  +I  DVP  +IGD  R++Q+L+NL+SNAI
Sbjct: 884 NPREFNLETLLQEVRFSFTPQAERKGLQLTHEIEPDVPRHLIGDDFRLQQVLSNLVSNAI 943

Query: 498 KFTPEGKVGIKL 509
           KFT  G+V I +
Sbjct: 944 KFTETGEVKIAV 955



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 89/171 (52%), Gaps = 32/171 (18%)

Query: 835  EKPDRISQSPSSSSAEVPETKPKP-----KPKILLVEDNKINVMVAKSMMKQLGHSIDVV 889
            ++PD  + SP++S  E PET   P       KIL+VED   N ++   M+++     D V
Sbjct: 1045 QQPDHPA-SPATS--EHPETSVSPLELQSTCKILVVEDQPDNRILLLLMLQEFDCETDWV 1101

Query: 890  NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSS 949
             NG EA+  +  ++YDL+ MD  MPVMDG +ATRL+R  E                    
Sbjct: 1102 ENGQEALERILAEDYDLVFMDCQMPVMDGYEATRLLREQETE------------------ 1143

Query: 950  GSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                   R+ II +TANA++   E+C   GMD ++SKPV  + +++ L ++
Sbjct: 1144 ------DRVIIIGLTANAMTRDREKCLNAGMDDYLSKPVLIEDIEQILNKW 1188


>gi|383789600|ref|YP_005474174.1| signal transduction histidine kinase [Spirochaeta africana DSM 8902]
 gi|383106134|gb|AFG36467.1| signal transduction histidine kinase [Spirochaeta africana DSM 8902]
          Length = 1509

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 105/177 (59%), Gaps = 2/177 (1%)

Query: 338  EKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILS 396
            E+ A+L +E+A +K  +  L       +    AK Q LA MSHEIR+P+ GV+ M  +L 
Sbjct: 830  ERTAELEQELAERKRAQEHLRIANRQVQSANAAKSQFLANMSHEIRTPMNGVIGMTGLLL 889

Query: 397  NTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456
            +T L+ EQR+    + +SG+ +L LIND+LD SK+E+G ++LE   F    +V  V +  
Sbjct: 890  DTDLNPEQRRYAEAVRTSGEALLTLINDVLDFSKIEAGKLELEQLDFNLLNIVDEVCEML 949

Query: 457  AA-SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            A  + +K L L   I    P  + GD  R RQIL NL+SNAIKFT EG+V +++  V
Sbjct: 950  AIRAHEKNLELILQIDPQTPWMLHGDPTRFRQILVNLVSNAIKFTHEGEVTLRITPV 1006



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 88/181 (48%), Gaps = 37/181 (20%)

Query: 835  EKPDRISQ---------SPSSSSAEVPETKP-----KPKP-KILLVEDNKINVMVAKSMM 879
            +KP RI Q          P   +   P   P     + KP ++L+ ED  IN  VA +M+
Sbjct: 1207 DKPIRIRQLYSALRSAMEPDFDAPRQPTATPAVRTQRGKPVRVLVAEDAPINQDVALAML 1266

Query: 880  KQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939
            ++LG   D V NG E + A++   YDL+LMD  MPVMDG +ATR IRS     N      
Sbjct: 1267 EKLGCRADAVANGAEVLTALETIPYDLVLMDCQMPVMDGYEATRRIRSSNRVLN------ 1320

Query: 940  AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
                              +PIIAMTA AL+   E+C A GMD +V KP+  Q++   +  
Sbjct: 1321 ----------------PGVPIIAMTAYALAGDREKCLACGMDDYVPKPIDAQEIARIINS 1364

Query: 1000 Y 1000
            Y
Sbjct: 1365 Y 1365



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 49/73 (67%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            ++ + +RC+V DTGIGIPE  L  LF  + Q+     R YGG+GLGL+I KQLV ++GG+
Sbjct: 1009 DSGIMLRCEVQDTGIGIPEERLGNLFSPFTQLDGSTTRTYGGSGLGLSISKQLVRMLGGK 1068

Query: 647  LTVTSKVHCGSTF 659
            + V S    GSTF
Sbjct: 1069 IGVRSTPGVGSTF 1081


>gi|116199499|ref|XP_001225561.1| hypothetical protein CHGG_07905 [Chaetomium globosum CBS 148.51]
 gi|88179184|gb|EAQ86652.1| hypothetical protein CHGG_07905 [Chaetomium globosum CBS 148.51]
          Length = 1901

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 109/186 (58%), Gaps = 12/186 (6%)

Query: 328  MDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLT 386
            +  T ++R R K A    +I   K  ET+L       +E M +K + L+ MSHEIR+PL 
Sbjct: 1199 LSYTTEIRLRSKSAT---DINDLKLLETKL-------KEAMDSKGRFLSNMSHEIRTPLI 1248

Query: 387  GVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446
            G+  M   L +T L+ EQR     + +S + +L +INDILDLSKV++G+MKL    F  R
Sbjct: 1249 GISGMVTFLQDTTLNEEQRDYTNTIQTSANSLLMIINDILDLSKVDAGMMKLNYEWFHTR 1308

Query: 447  EVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
             +++ V +  +  ++ K L L   + +DVP  V GD +RIRQ+L N+I NAIKFT  G+V
Sbjct: 1309 SLIEDVNELVSTMAIAKRLELNYVVEEDVPAWVKGDKVRIRQVLLNVIGNAIKFTSRGEV 1368

Query: 506  GIKLYV 511
              K  V
Sbjct: 1369 FSKCRV 1374



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 19/144 (13%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV---QCQNYDLILMDVCMPVMD 917
            K+LLVEDN +N  V +  ++++G ++++  +GVE    V       Y LIL D+ MP  D
Sbjct: 1774 KVLLVEDNPVNQKVLQKYLRRVGVAVELAADGVECTEMVFEKGWGYYALILCDLHMPRKD 1833

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G +A R +R+      W+A       +  P          +PIIA++AN +S+  ++C  
Sbjct: 1834 GYQACREVRA------WEAQRRRLGAEGPP----------LPIIALSANVMSDVQDKCVE 1877

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             G + +V+KPV F  L   L ++F
Sbjct: 1878 AGFNDYVTKPVDFIDLSTALAKFF 1901



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            + +   + DTG G  +     +F+ + Q+     R++GG+GLGL I +QLVEL GGR+  
Sbjct: 1387 IMLEFSIIDTGRGFSQEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGRMEG 1446

Query: 650  TSKVHCGSTFTFILPYQVSPIEENSDDPD 678
            ++  + GSTFTF   + + P E+  D PD
Sbjct: 1447 SAIPNKGSTFTFTARFGL-PTED--DHPD 1472


>gi|431929976|ref|YP_007243022.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
 gi|431828279|gb|AGA89392.1| signal transduction histidine kinase [Thioflavicoccus mobilis 8321]
          Length = 750

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 114/194 (58%), Gaps = 7/194 (3%)

Query: 323 VNYMGMD-VTDQVRKREKMAKL----REEIAVQKAKETELNKTIHITEETMRAK-QMLAT 376
           + Y   D V    R++E++  L    R EI  ++A E  L       E   +AK + +A 
Sbjct: 175 LGYANADLVASLTREKERIGALNEDLRREIGDRRAIEQALVLAKEQAEAASQAKSRFVAN 234

Query: 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVM 436
           MSHEIR+P+ G++ M E+LS T+L+REQ   L V+  S + +L +I+DILD+SK+ESG +
Sbjct: 235 MSHEIRTPMNGMLGMLEMLSQTRLNREQTAALQVVRRSAEGLLTVIDDILDVSKIESGKL 294

Query: 437 KLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495
           +LE   F  R + + V    +AS + K L L    A   P  V GD  R+RQIL NL+ N
Sbjct: 295 ELEEIPFDVRGLTEEVATLFSASARSKGLELACFFAPSAPAHVCGDPTRLRQILNNLLGN 354

Query: 496 AIKFTPEGKVGIKL 509
           AIKFT EG+V +++
Sbjct: 355 AIKFTHEGEVALRV 368



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 23/161 (14%)

Query: 841  SQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
            +Q P + SA      P  + ++LLVEDN IN  VA  ++++LG + DV   G + +    
Sbjct: 606  AQRPGAPSAG--HGAPLLRGRVLLVEDNPINQQVALGLLRRLGLTPDVAETGAQGIAQAT 663

Query: 901  CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
              +YD ILMD+ MP MDG + TR IR++E                     + +H + +PI
Sbjct: 664  SADYDAILMDIQMPDMDGYETTRAIRAWE---------------------AVHHRRSVPI 702

Query: 961  IAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            IAMTAN L    E C   GMD +++KPV      E L  + 
Sbjct: 703  IAMTANTLEGDRERCLEAGMDDYLAKPVRLAGFAEVLGHWL 743



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 47/77 (61%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           TV +R +V DTGIG+    +  LF  + Q  A   R++GGTGLGLAI K L  LMGG + 
Sbjct: 380 TVRLRFEVIDTGIGMSAEHMAHLFTPFHQADASTTRRFGGTGLGLAISKNLARLMGGDIE 439

Query: 649 VTSKVHCGSTFTFILPY 665
           V S +  GS F  ++P+
Sbjct: 440 VASGLGRGSRFALVVPF 456


>gi|423695927|ref|ZP_17670417.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Q8r1-96]
 gi|388009194|gb|EIK70445.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Q8r1-96]
          Length = 622

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 105/168 (62%), Gaps = 2/168 (1%)

Query: 342 KLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKL 400
           ++R  +   +  E  LN+  +  E+  R+K   LATMSHEIR+P+ GV+   E+L+ + L
Sbjct: 205 RMRTHLQQLRVNEQVLNQAKNAAEDADRSKTSFLATMSHEIRTPMYGVIGATELLARSAL 264

Query: 401 DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL 460
           D EQR+LL  + SSG  +L LI++ILDL+K+E+G ++L+   F  R +V   ++    ++
Sbjct: 265 DPEQRRLLTTIHSSGRTLLSLIDNILDLAKIEAGKLELKPRVFEVRALVSSCMELIRQNI 324

Query: 461 Q-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           Q K ++LE   + DVP  V  D+  +RQIL NL+ NA KFT  GK+ +
Sbjct: 325 QDKPIVLEAQFSPDVPPLVKTDMDCLRQILINLLGNAGKFTEAGKISL 372



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 24/138 (17%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           ILLVE++ ++  VA +M+++LG++ D+ ++G+EAV+        +ILMD+ MPVMDG++A
Sbjct: 489 ILLVENHPVSQKVAMAMLQELGYAPDLASDGLEAVNRCMASMPAIILMDINMPVMDGMEA 548

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            R IR              G+ Q     G + +     I+A TA+  S   E   A G D
Sbjct: 549 VRRIR--------------GLPQ-----GDTCY-----IVAFTASVFSSEIERFRAAGAD 584

Query: 982 SFVSKPVTFQKLKECLEQ 999
             ++KP  FQ L   L++
Sbjct: 585 DILTKPANFQALTRVLQR 602



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 49/82 (59%)

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
           W+   + DTGIGIP      LF+ + Q     ++++ G+GLGL+ICK L+E   G L+ T
Sbjct: 384 WLDFSIRDTGIGIPTERQDNLFKPFAQFKGPASQRFTGSGLGLSICKNLLEAQQGTLSFT 443

Query: 651 SKVHCGSTFTFILPYQVSPIEE 672
           S+   GSTF+F LP  +  + E
Sbjct: 444 SEPGVGSTFSFSLPLALFSVSE 465


>gi|330808143|ref|YP_004352605.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376251|gb|AEA67601.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 622

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 105/168 (62%), Gaps = 2/168 (1%)

Query: 342 KLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKL 400
           ++R  +   +  E  LN+  +  E+  R+K   LATMSHEIR+P+ GV+   E+L+ + L
Sbjct: 205 RMRTHLQQLRVNEQVLNQAKNAAEDADRSKTSFLATMSHEIRTPMYGVIGATELLARSAL 264

Query: 401 DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL 460
           D EQR+LL  + SSG  +L LI++ILDL+K+E+G ++L+   F  R +V   ++    ++
Sbjct: 265 DPEQRRLLTTIHSSGRTLLSLIDNILDLAKIEAGKLELKPRVFEVRALVSSCMELIRQNI 324

Query: 461 Q-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           Q K ++LE   + DVP  V  D+  +RQIL NL+ NA KFT  GK+ +
Sbjct: 325 QDKPIVLEAQFSPDVPPLVKTDMDCLRQILINLLGNAGKFTEAGKISL 372



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 24/138 (17%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           ILLVE++ ++  VA +M+++LG++ D+ ++G+EAV+        +ILMD+ MPVMDG++A
Sbjct: 489 ILLVENHPVSQKVAMAMLQELGYAPDLASDGLEAVNRCMASMPAIILMDINMPVMDGMEA 548

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            R IR              G+ Q     G + +     I+A TA+  S   E     G D
Sbjct: 549 VRRIR--------------GLPQ-----GDTCY-----IVAFTASVFSSEIERFRTAGAD 584

Query: 982 SFVSKPVTFQKLKECLEQ 999
             ++KP  FQ L   L++
Sbjct: 585 DILTKPANFQALTRVLQR 602



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 49/82 (59%)

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
           W+   + DTGIGIP      LF+ + Q     ++++ G+GLGL+ICK L+E   G L+ T
Sbjct: 384 WLDFSIRDTGIGIPTERQDNLFKPFAQFKGPASQRFTGSGLGLSICKNLLEAQQGTLSFT 443

Query: 651 SKVHCGSTFTFILPYQVSPIEE 672
           S+   GSTF+F LP  +  + E
Sbjct: 444 SEPGVGSTFSFSLPLALFSVSE 465


>gi|406961810|gb|EKD88400.1| sensory box histidine kinase/response regulator, partial
           [uncultured bacterium]
          Length = 478

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 154/301 (51%), Gaps = 32/301 (10%)

Query: 214 SQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLH---EEDILGKTDVEIFSG 270
           ++ILK+ + F   + Q  PV +   D E +   I   F  L    E +++G+    + + 
Sbjct: 132 NEILKQKE-FFESLFQYNPVAVVILDLEGKISSINPAFEVLFGYAEGEVIGQQLDPLVAP 190

Query: 271 AGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDV 330
             ++E+ D  + VL+ G  A R +                     K G  + V + G+ V
Sbjct: 191 ETLQEAADLTKTVLDGG--AVRGLANRQR----------------KDGTKVDVEFAGVPV 232

Query: 331 TDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVV 389
             + +K+  +A             +EL +   + E+  RAK + LA MSHEIR+P+ G++
Sbjct: 233 IVEGKKQGILAIYY--------NVSELVEAKRLAEQADRAKSEFLANMSHEIRTPMNGIM 284

Query: 390 SMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449
            M E+L +T L+ EQR  +     S + +L ++ND+LD SK+E+G + ++A ++  R  V
Sbjct: 285 GMLELLLDTSLNSEQRDYVSTARDSAEALLGILNDVLDFSKIEAGQLTIDAIEYDLRSTV 344

Query: 450 KHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
           + V  T  +  + K + L   I  DVP  V+GD  R+RQ+L NL+ NAIKFT EG+V I+
Sbjct: 345 EGVAHTLVSRAENKGIELACLIDKDVPSRVLGDAGRLRQVLINLVGNAIKFTSEGEVVIR 404

Query: 509 L 509
           +
Sbjct: 405 V 405



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%)

Query: 582 MDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE 641
           M    E T  +R  V DTGIGIP +    +F +++Q  +   RKYGGTGLGL I  QL +
Sbjct: 407 MQSKTEKTSTLRFLVSDTGIGIPLDRQKAVFERFVQADSSSTRKYGGTGLGLTISAQLTK 466

Query: 642 LMGGRLTVTSK 652
           +MGG + + S+
Sbjct: 467 MMGGDIGLESE 477


>gi|436841838|ref|YP_007326216.1| Cache sensor hybrid histidine kinase [Desulfovibrio hydrothermalis
           AM13 = DSM 14728]
 gi|432170744|emb|CCO24115.1| Cache sensor hybrid histidine kinase [Desulfovibrio hydrothermalis
           AM13 = DSM 14728]
          Length = 752

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 90/139 (64%), Gaps = 1/139 (0%)

Query: 368 MRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
           M   Q LA MSHEIR+P+  ++  A++L N     +Q+  + ++ ++GD +L LINDILD
Sbjct: 377 MAKNQFLAVMSHEIRTPMNVILGAADLLKNAGPREDQKDFIKLLENAGDGLLDLINDILD 436

Query: 428 LSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           +SK+E+G++ LE+  F P  V+K   +  A A+ +K +  E  +AD+ P  V GD +R++
Sbjct: 437 ISKIEAGLLDLESVSFNPCMVLKQTFKVFAIAADKKGIQFEMQVADNFPARVTGDPVRLK 496

Query: 487 QILTNLISNAIKFTPEGKV 505
           Q+L NL+ NA+KFT  G V
Sbjct: 497 QVLINLLDNAVKFTSNGGV 515



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 22/142 (15%)

Query: 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
           PK KILLVEDNK N+++    ++   HS++  +NG E V A      D++ MD+ MPVM+
Sbjct: 630 PK-KILLVEDNKSNMLLFAYFLEGSMHSMENASNGKEGVKAFIEMKPDIVFMDIEMPVMN 688

Query: 918 GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
           G +ATR IR +E                     + N   ++PIIA++AN +  +    + 
Sbjct: 689 GYEATRKIREWE---------------------AKNSTSQVPIIALSANTMKGTEAAVYE 727

Query: 978 NGMDSFVSKPVTFQKLKECLEQ 999
            G   +++KPVT  +L E +E+
Sbjct: 728 AGCTGYMTKPVTKLQLLERIER 749



 Score = 60.1 bits (144), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 578 HGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKY--GGTGLGLAI 635
           H  S+       + +   V DTGIG+PE    ++F  + Q      RK    GTGLGLAI
Sbjct: 518 HARSIVSGRNNMITLEFSVRDTGIGVPEEQHKSIFESFTQAGKPAPRKNQGKGTGLGLAI 577

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPY 665
            K L  +MGG +T+ S    GSTF F   +
Sbjct: 578 SKSLSIMMGGDITIKSSPDNGSTFIFTAAF 607


>gi|254443048|ref|ZP_05056524.1| Two component regulator three Y motif family [Verrucomicrobiae
           bacterium DG1235]
 gi|198257356|gb|EDY81664.1| Two component regulator three Y motif family [Verrucomicrobiae
           bacterium DG1235]
          Length = 1320

 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 109/182 (59%), Gaps = 8/182 (4%)

Query: 335 RKREKMAKLREEIAVQKAKET-----ELNKTIHITEETMRAK-QMLATMSHEIRSPLTGV 388
           R R   A+L E++  ++ +E      EL  ++   ++  +AK Q LA MSHEIR+P+ GV
Sbjct: 774 RARRHSAQL-EKVVSERTRELDETNDELRASVKEAKKAGQAKSQFLANMSHEIRTPMNGV 832

Query: 389 VSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448
           + M  +L++T+L   QR  +  + SS + +L +INDILD SK+E+G +++E   F   ++
Sbjct: 833 MGMCTLLNDTQLSNTQRDYVSTIRSSSETLLTIINDILDFSKIEAGKLQIETIPFDLVDL 892

Query: 449 VKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           V+ VL   +  L QK L L   IA  V  + IGD  RIRQIL NL+ NAIKFT  G + I
Sbjct: 893 VEDVLDLFSQHLEQKKLDLVHHIAASVSTQRIGDPTRIRQILVNLVGNAIKFTTSGDIYI 952

Query: 508 KL 509
            +
Sbjct: 953 SI 954



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 28/174 (16%)

Query: 828  QKICEMQEKPDRISQSPSSSSA--EVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHS 885
            + +C   +K   +  +  S+    ++P +K     +IL+VEDN +N  VA+ ++K+LG  
Sbjct: 1166 RALCFFFDKKTTVKNAKRSTRVLKKIPNSK---SLRILVVEDNPVNQKVARLLLKRLGFQ 1222

Query: 886  IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945
            ID+  NG+E V +V  Q+YD++LMDV MP MDGL+ATR IR               +   
Sbjct: 1223 IDLAGNGIEGVESVTRQHYDIVLMDVQMPEMDGLEATRQIRKLH------------LPDG 1270

Query: 946  MPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
             P+           I AM+A       +ECF  GM+ F+ KPV  + LK  LE+
Sbjct: 1271 QPA-----------IFAMSAGVSEYDKKECFDAGMNGFIPKPVKVETLKLALEE 1313



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 3/83 (3%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            I  +V D+GIGI +  L  LF+ + Q      RKYGGTGLGL+I K L E+M GRL   S
Sbjct: 963  ITIEVRDSGIGIDQRKLNDLFQPFSQEDESITRKYGGTGLGLSISKMLAEIMHGRLWAES 1022

Query: 652  KVHCGSTFTFILPYQVSPIEENS 674
            ++  GS+F F +    +P++++S
Sbjct: 1023 EIGVGSSFFFTIK---TPVDKSS 1042


>gi|380480185|emb|CCF42582.1| hsp90-like protein [Colletotrichum higginsianum]
          Length = 2494

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 120/205 (58%), Gaps = 19/205 (9%)

Query: 321  IGVNY---MGMDVTDQVR---------KREKMAKLREEIAVQKAKETELNKTIHITEETM 368
            IG++Y   + M   ++V          ++  +AK  E     K  E E  + + + EE  
Sbjct: 1891 IGISYSNALAMKAVEKVSAENVSMVALQKRALAKALEAETKAKHAEAEAKRNVKLAEEAA 1950

Query: 369  RAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
            +AK + LA +SHE+R+PL GV+  +E+L ++ LD++Q+++   +  S +L+L +INDILD
Sbjct: 1951 KAKSIFLANVSHELRTPLNGVIGNSELLKDSDLDKDQQEMADNIKVSAELLLTVINDILD 2010

Query: 428  LSKVESGVMKLEAAKFRPREVVKHVLQTAAAS-----LQKILMLEGDIADDVPIEVIGDV 482
             S++E+  MKL    F P E+V+ V++  + S      QK + +  DI D  P+ + GD 
Sbjct: 2011 FSRMEADKMKLYVIAFNPEEMVREVVRAVSYSNRQKTKQKNVKIIQDI-DLPPMLIFGDP 2069

Query: 483  LRIRQILTNLISNAIKFTPEGKVGI 507
            +R+ Q+L NLISN++KFT +G + I
Sbjct: 2070 IRLHQVLGNLISNSLKFTEDGSITI 2094



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 32/145 (22%)

Query: 856  PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
            PK + +I + EDN IN  +A    ++LG++            A   + Y ++LMDV MPV
Sbjct: 2226 PKDQIRICIAEDNPINQKIAIQYAQRLGYT----------TKARDGRPYHVVLMDVQMPV 2275

Query: 916  MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
            +DG +AT++IR                          +  ++I +IAMTA+A+    E+C
Sbjct: 2276 LDGYEATKMIR----------------------KDPIDVVRKILVIAMTASAIQGDREKC 2313

Query: 976  FANGMDSFVSKPVTFQKLKECLEQY 1000
             A GM+ +++KPV  + LK+ L+ Y
Sbjct: 2314 LAAGMNDYLAKPVRSEVLKKKLDTY 2338



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE-LMGG 645
            +AT+  R  V DTGIGIP+  L  LF+ + Q     ARKYGG+GLGL+ICK L+E +M G
Sbjct: 2105 KATLLFR--VQDTGIGIPQQQLVKLFQPFSQADTSTARKYGGSGLGLSICKSLIETMMKG 2162

Query: 646  RLTVTSKVHCGSTFTF 661
            ++ + S+   G+T  F
Sbjct: 2163 KIQLDSQEGVGTTAWF 2178


>gi|418357786|ref|ZP_12960476.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           01-B526]
 gi|356689025|gb|EHI53573.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           01-B526]
          Length = 1100

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 106/174 (60%), Gaps = 4/174 (2%)

Query: 342 KLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKL 400
           +LR+EI  ++  E  L +     E     K + LATMSHEIR+P+  +V MAE LS T L
Sbjct: 485 RLRQEILRRRQVEEALARAKESAEHAAGKKAEFLATMSHEIRTPMNSIVGMAEQLSFTSL 544

Query: 401 DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL 460
           D EQRQ++ ++    + +LQLI ++LD SK++ G M L  + F  RE++  VL   ++ +
Sbjct: 545 DLEQRQMVAIINQGAEGLLQLIGNVLDYSKLDVGKMALVPSSFLLRELIDSVLTMISSEV 604

Query: 461 Q-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG--KVGIKLYV 511
           Q K L     + D+V     GDVLR++Q+L NL+SNAIKFT  G  ++ IKL V
Sbjct: 605 QRKGLQCYLRVDDEVGARFTGDVLRLKQVLFNLVSNAIKFTERGFIELSIKLDV 658



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 25/149 (16%)

Query: 852  PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
            P ++P P  ++L+VED+ +N ++ +  +KQL    D+  NG +A+  +   +YDLIL D 
Sbjct: 855  PTSRPLPY-RLLVVEDHHLNQVLVQRQLKQLNLVCDLAENGQQALAMLAQHSYDLILCDC 913

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MPVMDG   T  +R+ E                           R+PIIAMTAN + E 
Sbjct: 914  QMPVMDGYDFTCQVRTVEG------------------------LARLPIIAMTANVMPEQ 949

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            A+ C A GM+  + KPV    L++ L ++
Sbjct: 950  AQRCLAAGMNDVLGKPVLLDGLRQILMKW 978



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIG+   A   +F  + Q      R YGGTGLGL+I   L ELMGG L + S    
Sbjct: 670 VQDTGIGMSTEAQARIFNAFEQADGATTRSYGGTGLGLSISHTLAELMGGELRLESAPGL 729

Query: 656 GS--TFTFILPYQV 667
           G+    +  LP+++
Sbjct: 730 GTFIGLSVTLPFEL 743


>gi|350554177|ref|ZP_08923307.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
            700588]
 gi|349788353|gb|EGZ42356.1| multi-sensor hybrid histidine kinase [Thiorhodospira sibirica ATCC
            700588]
          Length = 1595

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 110/173 (63%), Gaps = 12/173 (6%)

Query: 348  AVQKAKET-ELNKTIHITEETMRA--KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
            A Q+ +ET E  K + +  E   A   + LA MSHEIR+P+ GV+ M  +L +++L+ EQ
Sbjct: 902  AEQRLQETTEHAKQLAVQAERANAAKSEFLANMSHEIRTPMNGVIGMTGLLLDSELNAEQ 961

Query: 405  RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL---- 460
            R+    +++S + +L LINDILD SK+E+G + LEA  F     ++++L+  AA+L    
Sbjct: 962  RRQAETILNSAESLLSLINDILDFSKIEAGKLDLEALDFN----LQYLLEDFAAALAGRA 1017

Query: 461  -QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
             +K L L   +A D P+ + GD  R+RQIL NL+ NAIKFT +G+VGI + +V
Sbjct: 1018 YEKGLELFCVLAPDTPLYLRGDPGRVRQILNNLVGNAIKFTHQGEVGIHVSLV 1070



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 93/174 (53%), Gaps = 30/174 (17%)

Query: 837  PDRISQSP--------SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDV 888
            PDR++ +P        ++  A+V    P  K +ILLVEDN  N  VA  ++++LG   D 
Sbjct: 1299 PDRLTHTPIISPRGPRAAIHAQVIPFAPN-KVRILLVEDNSTNQQVALGILRKLGLKADA 1357

Query: 889  VNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948
            V NG EAV  V    YDLILMDV MPVMDGL+ATR IR+ +         +A I      
Sbjct: 1358 VGNGQEAVETVINIPYDLILMDVQMPVMDGLQATRAIRALD---------KAAIN----- 1403

Query: 949  SGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
                     IPI+AMTA+A+    E C A GM+ ++SKP+   ++ E L    P
Sbjct: 1404 -------TDIPIVAMTAHAMQGDKERCLAAGMNDYLSKPLVPHQVAETLALCLP 1450



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 52/83 (62%)

Query: 581  SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
            S+ E  E  V +R  V DTGIGIP + +  LF+K+ QV     R YGGTGLGLAI KQL 
Sbjct: 1068 SLVEHREDAVLLRFAVTDTGIGIPPDKVSLLFQKFSQVDGSITRTYGGTGLGLAISKQLA 1127

Query: 641  ELMGGRLTVTSKVHCGSTFTFIL 663
            E+M G + V S+   GSTF F L
Sbjct: 1128 EMMQGDIGVESQEGVGSTFWFTL 1150


>gi|87118652|ref|ZP_01074551.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121]
 gi|86166286|gb|EAQ67552.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121]
          Length = 916

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/150 (44%), Positives = 98/150 (65%), Gaps = 4/150 (2%)

Query: 364 TEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
           T E+ R K Q LA MSHE+R+PL  ++   ++L   KLD +QR  +  +  S + +L +I
Sbjct: 282 TSESNRLKTQFLANMSHEVRTPLNAILGYTQLLQKDKLDNQQRLYINTIEQSTNNLLAII 341

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL---QKILMLEGDIADDVPIEVI 479
            DILD SK+E+G + LE ++   RE++  V Q  +A+L   +K + L  ++A++VP  +I
Sbjct: 342 GDILDFSKIEAGKLNLEQSEVNIRELIDDVYQILSANLLTHKKPVDLIPEVANEVPEWLI 401

Query: 480 GDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           GD +RIRQILTNLI NAIKFT +G V  K+
Sbjct: 402 GDAIRIRQILTNLIGNAIKFTHDGFVRTKV 431



 Score = 83.2 bits (204), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 52/82 (63%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIPEN L +LF+ + QV+    R++GGTGLGL I K+LVE MGG + V S+   
Sbjct: 447 VIDTGIGIPENKLNSLFKAFSQVNTSTTRQFGGTGLGLVITKKLVEQMGGEIEVNSESGV 506

Query: 656 GSTFTFILPYQVSPIEENSDDP 677
           GS F F +    S  EE   +P
Sbjct: 507 GSNFRFRINLHSSNHEEQPLEP 528



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 28/155 (18%)

Query: 850  EVPETKP----KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYD 905
            E+P   P    + + K+L V+DN+IN+ +    +      + + ++G  A+     + +D
Sbjct: 658  EIPTNAPASFTRNQLKVLAVDDNQINLQLVSHWLTPNNIDVSLAHSGQAALDLCAREQFD 717

Query: 906  LILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965
            LILMD+ MP MDG++ TR +R  ++T                          IPIIA+TA
Sbjct: 718  LILMDIQMPEMDGMETTRRLRQHKNT------------------------TLIPIIALTA 753

Query: 966  NALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            +ALS   +E   +GM+++++KPV   KL E ++ +
Sbjct: 754  HALSSEKQEILKSGMNAYLTKPVNESKLLEVIQDW 788


>gi|254460391|ref|ZP_05073807.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083]
 gi|206676980|gb|EDZ41467.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083]
          Length = 718

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 172/398 (43%), Gaps = 57/398 (14%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  + DTGIGIP   +  +F ++ QV  + +R++ GTGLGL+I K+LVELMGG++ VTS
Sbjct: 367 LRVTIQDTGIGIPAPKIDHIFGEFNQVDDEQSREFEGTGLGLSITKRLVELMGGQIWVTS 426

Query: 652 KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLG-SLFS 710
           +   G+ F F +     P E        L +    DS   ++T    + Q   LG +  S
Sbjct: 427 ENGEGTCFGFQVKLDSRPSEGLDMVKPALKNALIVDS--SELTRTILEKQLALLGLACTS 484

Query: 711 SNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLSE 770
            +  S++   L N   FA    V     T   F    + +   P      +A  A     
Sbjct: 485 VDHESKAVDALQNGCDFAIIDDVQC---TIDGFDLAQKLRAAQPDLPILLIAANAGI--- 538

Query: 771 PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKI 830
                        E +  R    HV      Q P      +     EM  T     P++ 
Sbjct: 539 ------------AEKDPVRHTVSHV-----LQKPVPRQVLY-RILMEMNPTKTVEPPKEA 580

Query: 831 CEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVN 890
                +  R  ++P+ +      T  + + ++L  EDNK N +V   M+K+L   +   +
Sbjct: 581 VVFHARQRR--ETPALT------TDTRRRLRVLAAEDNKTNQLVFGKMLKELDVELLFAS 632

Query: 891 NGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950
           NG+EAV        D++ MD+ MP  DG  AT+ IR  E T                 +G
Sbjct: 633 NGIEAVSLYDSFTPDIVFMDISMPKKDGKAATQEIRDKEKT-----------------TG 675

Query: 951 SSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
           +     RIPI+AMTA+A+S   E     G+D F++KP+
Sbjct: 676 T-----RIPIVAMTAHAMSGDQEAILDAGLDRFLTKPL 708



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 98/160 (61%), Gaps = 6/160 (3%)

Query: 354 ETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMI 412
           E +L K  +  E   RAK   LA MSHEIR+P+ G+V MA++LS T L  EQR  +  + 
Sbjct: 199 ENQLKKARYQAETANRAKSAFLANMSHEIRTPMNGIVGMADLLSETGLGEEQRLFVDTIR 258

Query: 413 SSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGD 469
           +SG+ +L +IND+LD SK+E+  ++L    F   + +  V   LQ  A      L+++ D
Sbjct: 259 NSGEALLTIINDVLDYSKIEAERLELRPTTFDFEQCIHEVMRLLQPPARDKDIALLVDYD 318

Query: 470 IADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           +   +P +V+GD  RIRQILTN+I NA+KFTP G V I +
Sbjct: 319 LF--LPTQVVGDPGRIRQILTNIIGNAVKFTPSGHVLISV 356


>gi|220925264|ref|YP_002500566.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219949871|gb|ACL60263.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 713

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 60/137 (43%), Positives = 92/137 (67%), Gaps = 1/137 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LAT+SHE R+PL G++ MA+++ +T L  EQ   +  + +SG+ +L LI+ ILD SK+
Sbjct: 205 RFLATVSHEFRTPLNGILGMADLVLDTPLSPEQETYIRAVKTSGEALLSLIDGILDFSKI 264

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + L A  F P  +V+ V++  A   Q K L +  D+A+D+P++V+GD  R+RQIL 
Sbjct: 265 EAGRLDLAAEPFDPAGLVESVVELLAPRAQDKGLEIAADLAEDLPLQVVGDSDRVRQILL 324

Query: 491 NLISNAIKFTPEGKVGI 507
           NL  NA+KFT  G VG+
Sbjct: 325 NLAGNAVKFTESGGVGV 341



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 49/75 (65%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V DTG GIPE  LP LF ++ Q     +R++ GTGLGLAI ++LV+ MGGR+ VTS
Sbjct: 350 IALTVRDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIEVTS 409

Query: 652 KVHCGSTFTFILPYQ 666
           +   GS F  +LP +
Sbjct: 410 RPDEGSCFRVVLPLR 424



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 32/175 (18%)

Query: 830 ICEMQEKPD-RISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDV 888
           +CE    P   + ++P    A+ P    + +P++LL EDN IN ++A+  +++L   +  
Sbjct: 557 LCEEARPPGGELRRAPG---ADRPAAA-RGRPRVLLAEDNPINALLARKALERLDTVVTW 612

Query: 889 VNNGVEAVHAVQCQN------YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGI 942
           V +GVEA+  ++         +DL L+D+ MP +DGL+A R +R+FE             
Sbjct: 613 VPDGVEALRHLEAAAAGEAEGFDLALLDIRMPRLDGLEAARRLRAFERA----------- 661

Query: 943 EQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
            + +P      H     +IA+TAN  +E      A G D F+SKP+    L   L
Sbjct: 662 -RGIP----PQH-----LIAVTANVGAEDEAAARAAGFDGFLSKPLDLIALPALL 706


>gi|218781753|ref|YP_002433071.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763137|gb|ACL05603.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 949

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 15/262 (5%)

Query: 270 GAGVKE---SQDFKR------EVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGET 320
           G G+++   S+D  R       +LEKG+    E          + F   + P+    G  
Sbjct: 185 GMGIRDFMPSEDAARFTKRFHAILEKGVGGIYEDWVTLPGGQKRCFSSNIHPISRSDGHI 244

Query: 321 IGVNYMGMDVTDQVRKREKMAKLREEI-----AVQKAKETELNKTIHITEETMRAKQMLA 375
           +G   + +D+T Q    + + + +EE       ++   E      +      M   + LA
Sbjct: 245 MGFQCILLDITRQKEVEQALRRAKEETEDANRQLEMIIEDSNRLAVQADLANMAKSEFLA 304

Query: 376 TMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGV 435
            MSHEIR+P+ GVV M  +L  T+L REQ++    + +S   +L++INDILD SK+E+G 
Sbjct: 305 NMSHEIRTPMNGVVGMISLLLETELTREQKEYAETVRNSAHSLLEIINDILDFSKIEAGK 364

Query: 436 MKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLIS 494
           + LEA  F  R  ++      A   Q K L     I  DVP  + GD +R+RQI+ NL +
Sbjct: 365 LDLEAIDFDLRNTLEEASDIVALRAQEKGLEFVCIIDPDVPFRLKGDPVRLRQIVLNLAN 424

Query: 495 NAIKFTPEGKVGIKLYVVPEPP 516
           NA+KFT +G + I++ ++ + P
Sbjct: 425 NAVKFTAQGSITIRVELLKQAP 446



 Score = 89.7 bits (221), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 26/166 (15%)

Query: 839  RISQSPSSSSAEVPE--TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
            +IS+ P     E+P   T  +P   IL+ EDN +N  VA S++K+LG   + V NG EAV
Sbjct: 673  KISKPPRF---EMPSLTTLQRPDVSILVAEDNPVNQKVALSILKKLGLRAEAVANGREAV 729

Query: 897  HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
             A+  + Y ++ MD  MP MDG +ATR IRS                       S     
Sbjct: 730  KALCEKKYTMVFMDCQMPDMDGYEATRRIRSRR---------------------SCVLDP 768

Query: 957  RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            + P+IAMTA+A+    ++C   GMD ++SKPV    L E + ++ P
Sbjct: 769  KTPVIAMTAHAMEGDRKKCIEAGMDDYLSKPVEPGALIEMIHKWLP 814



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 44/70 (62%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           ++  V DTGIG+  +   +LF  + Q  A   R YGGTGLGLAI K+L ++M GR+ + S
Sbjct: 451 LKFSVTDTGIGVAPSRQQSLFDAFTQAEASTTRNYGGTGLGLAISKKLAQMMKGRIGLES 510

Query: 652 KVHCGSTFTF 661
           +   GSTF F
Sbjct: 511 EEGKGSTFWF 520


>gi|426405316|ref|YP_007024287.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           str. Tiberius]
 gi|425861984|gb|AFY03020.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           str. Tiberius]
          Length = 734

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 97/154 (62%), Gaps = 5/154 (3%)

Query: 361 IHITEETMRAKQM----LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGD 416
           +H   E ++A QM    LA MSHEIR+P+ G++ M E+L +   +   ++ + ++  S  
Sbjct: 220 VHARNEALQASQMKSSFLANMSHEIRTPMNGILGMTEVLLDQNPESGIKKKIQIIRESAL 279

Query: 417 LVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVP 475
            +L LIN ILDLSK+ESG ++LE + F PR++++ V+ T   S + K L L   +++  P
Sbjct: 280 NLLSLINGILDLSKIESGKLELEESYFEPRKLIQEVINTVDYSAKSKGLELHASVSEQTP 339

Query: 476 IEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
               GDVLR+RQIL NL+ NAIKF+ EG V + L
Sbjct: 340 AAFSGDVLRLRQILINLLGNAIKFSSEGTVSLAL 373



 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 81/159 (50%), Gaps = 29/159 (18%)

Query: 839 RISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
           R S+S + +S+E P        KIL+ EDN  N  V K M+ +LGH  D+VNNG EA+  
Sbjct: 469 RPSESQNYASSEAP-------LKILVAEDNMTNQEVVKVMLNRLGHKFDIVNNGKEALEK 521

Query: 899 VQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
                YD+ILMD  MPVMDG +A + I   E    W               G +      
Sbjct: 522 TIATTYDIILMDCHMPVMDGYEAAQKIT--ERFPQW-------------CQGPA------ 560

Query: 959 PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
            +IA+TANA+    E C A GM  ++SKP+T  +L E L
Sbjct: 561 -VIAVTANAIRGDKEACLAAGMCDYLSKPLTLAELDEKL 598



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 1/116 (0%)

Query: 573 GTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLG 632
           GT     NS   D   T+ ++  V D G+G+ E  L  +F  + Q      RK+GGTGLG
Sbjct: 367 GTVSLALNSFRSDQSRTM-LQIQVKDQGLGMDEATLAKIFSPFEQADKSTTRKFGGTGLG 425

Query: 633 LAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDS 688
           L+I KQLVELM G++ V S+   GSTF   LP +   +   +  P +  + A  ++
Sbjct: 426 LSITKQLVELMNGKIEVESRPGEGSTFWVTLPLEAINVMPENQRPSESQNYASSEA 481


>gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1349

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 6/158 (3%)

Query: 356 ELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISS 414
           ELN+     E   R K + LA MSHEIR+P+ GV+ M  +L +T+L  EQR   G +  S
Sbjct: 769 ELNRAKEQAEAASRHKTEFLANMSHEIRTPMNGVIGMTGLLLDTELTTEQRDYAGTVRRS 828

Query: 415 GDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKI---LMLEGDIA 471
           G+ +L LINDILD SKVE+G + +EA+ F  R  ++ V +  A  ++     L+L+  + 
Sbjct: 829 GESLLTLINDILDFSKVEAGKLAIEASAFDLRSTIEEVDEMLAPKIENRKLDLVLQYPVG 888

Query: 472 DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
              P   +GD  RIRQ++TNL+ NAIKFT EG + I++
Sbjct: 889 --APRHFVGDAGRIRQVVTNLVGNAIKFTGEGSIVIEV 924



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 68/142 (47%), Gaps = 23/142 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+ EDN +N  V+  M+ +LG   DV  +G EAV       YDLI MD  MP MDG  
Sbjct: 1185 RVLVAEDNVVNQKVSARMLDKLGIRADVAADGREAVALFGLVPYDLIFMDCQMPEMDGYA 1244

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR IR  E  G                       +R+PI AMTA  L    E C A GM
Sbjct: 1245 ATREIRRREGPG-----------------------RRVPIAAMTAEVLGGCRELCLAAGM 1281

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D  + KPV  + L E L ++ P
Sbjct: 1282 DDHIPKPVKMEVLFETLRRWIP 1303



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 59/88 (67%), Gaps = 3/88 (3%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            EA   +R  ++DTG GIP   + +LF K+ Q+     RKYGGTGLGLAI KQLV LMGG 
Sbjct: 931  EARAVMRVAIHDTGPGIPSEKIGSLFEKFSQLDGSTTRKYGGTGLGLAISKQLVSLMGGS 990

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENS 674
            + V+S++  GSTF+F LP    P++ NS
Sbjct: 991  MAVSSRLGEGSTFSFTLPL---PLDANS 1015


>gi|294055873|ref|YP_003549531.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293615206|gb|ADE55361.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 586

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 14/185 (7%)

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM----LATMSHEIRSPLTGV 388
           +V+K     K  + I VQ+  E   +K  +  ++ +   +M    LA MSHEIR+P+ GV
Sbjct: 143 RVQKESLALKNSQVIKVQRDLELTNDKLAYSRDKALEGVRMKDIFLANMSHEIRTPMNGV 202

Query: 389 VSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448
           + M ++L +T++D EQ QL+G   SS + ++++INDILD SK+E+G + +E   F   E+
Sbjct: 203 LGMIDLLYDTEMDAEQEQLVGTARSSAETLMRIINDILDFSKIEAGKVSVELMPFNLIEI 262

Query: 449 VKH--VLQTAAASLQKILMLEGDIA---DDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
           V+    L + AA+ ++I     D+A   DDVP  V+GD  R +Q+L NLISNA+KFT  G
Sbjct: 263 VESSAALYSEAATEKEI-----DLAVAFDDVPAWVVGDPHRYQQVLNNLISNAVKFTDSG 317

Query: 504 KVGIK 508
           +V I+
Sbjct: 318 EVEIR 322



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 51/74 (68%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I  +V DTGIGIP + +  LF  + Q    HAR++GGTGLGL+IC+ L EL+GG +   S
Sbjct: 334 ILTEVKDTGIGIPASKVTKLFEPFTQAEESHARRFGGTGLGLSICRNLCELLGGEIECDS 393

Query: 652 KVHCGSTFTFILPY 665
           ++  G+ F+F+LP+
Sbjct: 394 QLDDGTVFSFVLPF 407



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 21/137 (15%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           ILLVEDN +N  VA+ ++ +L   + + +NG  A+  ++  ++  +LMD  MP+MDG +A
Sbjct: 441 ILLVEDNLVNQEVARRILTKLDCEVAIADNGRSAIEYLKGGDFSCVLMDCQMPIMDGFEA 500

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
           T  IR            EAG+             + I I A+TA A+S   E C  +GMD
Sbjct: 501 TEAIRR----------GEAGVRN-----------QEIFICAVTAYAMSGDRERCMQSGMD 539

Query: 982 SFVSKPVTFQKLKECLE 998
            + SKP      +  LE
Sbjct: 540 HYFSKPFGVSDFRNALE 556


>gi|307545605|ref|YP_003898084.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581]
 gi|307217629|emb|CBV42899.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581]
          Length = 911

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 111/185 (60%), Gaps = 10/185 (5%)

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSM 391
           Q +  +   +L+E +   + +  EL+       +  RAK + LA MSHEIR+PL G++  
Sbjct: 226 QTQVEQATQELQESMETIEVQNIELDLAHRRALDANRAKSEFLANMSHEIRTPLNGIIGF 285

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
             +L  ++L+  QR+ L  +  + D +L L+ND+LD SK+E+G ++LE    RP ++V  
Sbjct: 286 CRLLHRSELNARQREWLDHVRRACDNLLMLVNDVLDFSKIEAGRLELE---HRPLDMVAL 342

Query: 452 V-----LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVG 506
           V     LQ   A  QK L L G + DDVP E+ GD LRIRQ+LTNL+ NA+KFT  G+V 
Sbjct: 343 VDEVLGLQAPQAQ-QKNLQLLGLVYDDVPGELFGDPLRIRQVLTNLVHNAVKFTDRGEVI 401

Query: 507 IKLYV 511
           +++ V
Sbjct: 402 VRVSV 406



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 50/87 (57%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +   V DTGIG+ +     LF  + Q    H R++GGTGLGLAIC+QLVE MGG ++V S
Sbjct: 416 LNVSVSDTGIGLSQACQRQLFDAFRQGETSHQRQFGGTGLGLAICRQLVEQMGGEISVDS 475

Query: 652 KVHCGSTFTFILPYQVSPIEENSDDPD 678
           +   GSTF F LP       E   + D
Sbjct: 476 ESGQGSTFFFTLPLDAHDTSERPSEMD 502



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 26/159 (16%)

Query: 845  SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDV--VNNGVEAVHAVQCQ 902
            ++ +A  PE   +P   IL V+D + N ++ K ++   G  ++V    +G EA+   +  
Sbjct: 626  AADTATPPEDASRPW-HILCVDDTESNRLLLKELILGAGSGVEVSLAASGEEALALARHT 684

Query: 903  NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962
             +DL+LMD+ M  MDG++ TR +R                           H++R+PIIA
Sbjct: 685  TFDLVLMDIRMQGMDGVETTRELRRL-----------------------GGHWRRLPIIA 721

Query: 963  MTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            +TA+       +   NG+D  + KP+   +L + ++ + 
Sbjct: 722  VTAHVQDNQRRDLLDNGLDGMLEKPIDTAQLSQLMQHHL 760


>gi|99078255|ref|YP_611513.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035393|gb|ABF62251.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 741

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 102/161 (63%), Gaps = 5/161 (3%)

Query: 350 QKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLL 408
           ++A E  L + + + E   RAK Q LA +SHEIR+PL GV+ MA +L  TKLD EQ++ L
Sbjct: 349 ERAAEA-LREALSLAEAANRAKTQFLANVSHEIRTPLNGVLGMASVLGETKLDEEQQEFL 407

Query: 409 GVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK--HVLQTAAASLQKILML 466
            V+  SG ++L  I D+LDLSKVE+G M LE   F  R  ++    L +A A  +K + L
Sbjct: 408 QVIEDSGQVLLTTIGDVLDLSKVEAGKMTLETKPFTLRNALEGARALFSARAK-EKGIGL 466

Query: 467 EGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
             ++ DD+P  ++GD  R RQ++ NL+SNAIKFT  G V I
Sbjct: 467 HLEMHDDLPRVILGDDHRFRQVVHNLVSNAIKFTETGAVTI 507



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 25/155 (16%)

Query: 835 EKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
           E  + +SQ P+S +  VP     P   +L+V+DN+ N ++ +  +    + +  V+NG E
Sbjct: 596 EAQELLSQ-PASGAVSVPH---GPALDVLVVDDNRTNRLILEKFLSSTPYRVKSVSNGQE 651

Query: 895 AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
           A+  V   ++D+ILMD+ MP MDG++ T+ IRS              IEQA    G    
Sbjct: 652 AIGLVHSFSFDVILMDIQMPRMDGVETTQKIRS--------------IEQA---KGREPS 694

Query: 955 FKRIPIIAMTANALSESAEECFANGMDSFVSKPVT 989
           F    I+A+T NA+ E      + GMD  ++KPV+
Sbjct: 695 F----IVAVTGNAMPEQLSHYLSVGMDDVLAKPVS 725



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 42/69 (60%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTG GIP  A   +F+ + QV    ARK+GGTGLGL+I +QL  LMGG L V      
Sbjct: 522 VSDTGPGIPAEARDMIFQPFQQVEGGDARKFGGTGLGLSISRQLCHLMGGSLQVADDEPQ 581

Query: 656 GSTFTFILP 664
           G+TF   LP
Sbjct: 582 GATFEIRLP 590


>gi|239905559|ref|YP_002952298.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239795423|dbj|BAH74412.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
          Length = 2025

 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 151/300 (50%), Gaps = 33/300 (11%)

Query: 224  LHFVLQNAPVVMGHQDKELRY-----RFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQD 278
            L   +++AP  +   D+++ Y     R+I ++   L E  +LG++  EIF     +  Q 
Sbjct: 1516 LRLFVEHAPAAIAMFDRDMTYLAVSRRWIDDY--KLDERAVLGRSHYEIFP----EIPQR 1569

Query: 279  FKR---EVLEKGLPAKREITFETELFGSKTFLIY-VEPVFSKSGETIGVNYMGMDVTDQV 334
            +KR   + L   +       F   L G+  F+ + + P  +  G   G+     DVT  +
Sbjct: 1570 WKRIHQQCLAGAIERADSDPF-VRLDGNTQFVSWEIRPWLTPEGAIGGIVCFSEDVT--L 1626

Query: 335  RKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEI 394
            RK              +A+   L              + LA MSHEIR+PL G++ M ++
Sbjct: 1627 RK--------------QAETAMLEAKNAAEAANRAKSEFLANMSHEIRTPLNGLLGMLQL 1672

Query: 395  LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
            L +T LD EQ +   + I +G+ + +L++DILDLS++E+G + + AA FR   VV+ + +
Sbjct: 1673 LHSTTLDAEQEEYAQMAIRAGNRLTRLLSDILDLSRIEAGRLPIVAAPFRLANVVQALRE 1732

Query: 455  TAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
            T A    +K L L  +    +P  ++GD LRIRQIL NL+ NA+KF+  G V + +  +P
Sbjct: 1733 TFAPFCKEKRLQLVFETEAALPEWLVGDELRIRQILFNLVGNALKFSTNGDVLVTMSRLP 1792



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 22/161 (13%)

Query: 840  ISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
            +SQS  + S    E+     P  +LLVED+ I+    + ++++ G+ + V  +G +A+  
Sbjct: 1877 LSQSDLADSGAQDESGTPAVPCHVLLVEDDSISQRSIQRLLEKAGYHVTVAGDGSQALEI 1936

Query: 899  VQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
            ++   +D +LMDV MPV+DG+ AT+ IRS                     SG+ +  + I
Sbjct: 1937 LRRAKFDCVLMDVQMPVLDGVTATKRIRS-------------------DVSGAVD--RTI 1975

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            PI+A+TA A+S   +     GMD ++SKPV+ +K+K+ ++Q
Sbjct: 1976 PIVALTAFAMSGDQDIFLKAGMDGYLSKPVSLEKMKQAIDQ 2016



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 7/92 (7%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V D GIGIP++ L ++   ++Q    + R   G GLGL I K+LV+LM G + + S+   
Sbjct: 1805 VADNGIGIPDDKLDSVCEPFIQAEGSYTRSQQGAGLGLTITKRLVDLMHGTMALESEAGV 1864

Query: 656  GSTFTFILPYQVSPIEENSDDPDDLSDMADQD 687
            G+T    LP  V  + ++     DL+D   QD
Sbjct: 1865 GTTAYVTLP--VGLLSQS-----DLADSGAQD 1889


>gi|406893933|gb|EKD38867.1| sensory box histidine kinase/response regulator [uncultured
           bacterium]
          Length = 879

 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 156/335 (46%), Gaps = 39/335 (11%)

Query: 192 LMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF 251
           L E + +    L +     EE  Q  +   +FLH +++  P  + +++ E RY      F
Sbjct: 325 LEELVQKRTAELARAKEKAEEAVQAFRLQHDFLHTLIETIPNPLFYKNSEGRYTGCNAAF 384

Query: 252 PSLH---EEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLI 308
            S        I+GKT  E+             +E+L K  P  +  T++  +F +   L 
Sbjct: 385 ESYLGKPRSAIIGKTVFEMAPADIAARYHHNDQELLAK--PGTQHYTWK--VFRADGILR 440

Query: 309 YVEPVFSKS------GETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIH 362
            V  +F K+      G+ +G+  +  D+TD       + + R+E  +  A + E      
Sbjct: 441 DV--IFDKATIHDSGGKVVGLLGVITDITD-------LVEARKEAEIANAAKGEF----- 486

Query: 363 ITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLI 422
                      LA MSHEIR+PL G++ MAE+L  T L  +Q Q    ++S G+ +L +I
Sbjct: 487 -----------LANMSHEIRTPLNGILGMAELLLTTPLTPDQHQYAQTVVSCGEALLTVI 535

Query: 423 NDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGD 481
           NDILD SK+E+G ++     F  R  +  + +     + +K L+    +   VP  + GD
Sbjct: 536 NDILDFSKIEAGKLRFNIVDFDLRHTMDELYKIVNFHAARKGLLFLVTVDPRVPTLLKGD 595

Query: 482 VLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
             R+ Q+L NL +NA+KFT  GKV I + +  E P
Sbjct: 596 PARLSQVLLNLATNAVKFTESGKVSIAVTLKSETP 630



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 84/141 (59%), Gaps = 10/141 (7%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +ILLVEDN IN  VA  ++K LG  +   +NG +A+ A++ Q++DLI MDV MP MDGL+
Sbjct: 738 RILLVEDNFINQTVAMQILKNLGCRVVAADNGRQALDAIKEQSFDLIFMDVQMPEMDGLE 797

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR IR       W+A   A     +      +  +RIPIIA+TA+A+    ++C   GM
Sbjct: 798 ATRAIR------QWEARRNANHAGRIDDPADHSRDRRIPIIALTAHAMVGDRQKCLDAGM 851

Query: 981 DSFVSKPVT----FQKLKECL 997
           D +++KPV       K+KE L
Sbjct: 852 DDYLAKPVVPAILAAKIKEWL 872



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 587 EATVW--IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMG 644
           E   W  +  +V DTGIGI       LF+ + Q+    +RKYGGTGLGLAICK+LV +MG
Sbjct: 628 ETPTWATLHFEVSDTGIGIAPEQTYRLFQSFSQIDGSFSRKYGGTGLGLAICKKLVAIMG 687

Query: 645 GRLTVTSKVHCGSTFTF 661
           G + V S+ + GSTF F
Sbjct: 688 GTIDVKSRENHGSTFRF 704


>gi|374300093|ref|YP_005051732.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553029|gb|EGJ50073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 558

 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 107/176 (60%), Gaps = 3/176 (1%)

Query: 336 KREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEI 394
           KR  +A +R+ I  +K  E EL +     E   R K + LA +SHEIR+P+ G++ M E+
Sbjct: 142 KRYAVAVVRD-ITDRKKAEDELKQAKEAAESASRTKSEFLANISHEIRTPMNGIIGMVEL 200

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
              T  D + R+ LG +  SG  +L +INDILD SK+E+G ++L+  +F PR +V+  L+
Sbjct: 201 ALLTASDVQTREYLGFIKQSGLALLNIINDILDFSKIEAGRLQLDLREFDPRHMVETTLR 260

Query: 455 -TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
             +  + +K L L   I  DVP  + GD  RIRQ+LTN++ NAIKFT  G V +++
Sbjct: 261 PLSYMAKEKDLPLRWSIDPDVPERLAGDQGRIRQVLTNVVGNAIKFTERGSVVVRV 316



 Score = 97.8 bits (242), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 78/136 (57%), Gaps = 21/136 (15%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           ILLVEDN IN ++A+S+++Q GH + V +NG EA+  +  +++D I MDV MP M G +A
Sbjct: 432 ILLVEDNLINQLLAQSLLEQRGHEVVVASNGREALEKLGGRHFDCIFMDVRMPEMSGEEA 491

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
           T +IRS          A  G++             RIPIIA+TA AL    E   A GMD
Sbjct: 492 TGIIRS---------GAVKGVD------------PRIPIIALTAYALEGDKERLIAAGMD 530

Query: 982 SFVSKPVTFQKLKECL 997
            ++SKP+  Q+L   L
Sbjct: 531 DYISKPIDMQELARVL 546



 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 11/142 (7%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           +V +   V DTGIGIP +    +F  + QV      KYGG GLGL+I +QLVE+MGGR+ 
Sbjct: 329 SVQLLFSVRDTGIGIPADKQEKIFESFSQVGTSAHMKYGGAGLGLSISRQLVEMMGGRIW 388

Query: 649 VTSKVHCGSTFTF----------ILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFF 698
           V S    GSTF F          ++  +V  +E+  +  + LS +  +D++ + + A   
Sbjct: 389 VESDPGKGSTFHFTVRLSRAAGPVVGKRVQALEKAPEASEPLSILLVEDNLINQLLAQSL 448

Query: 699 QFQPRTLGSLFSSNGTSRSKKL 720
             + R    + +SNG    +KL
Sbjct: 449 -LEQRGHEVVVASNGREALEKL 469


>gi|323499281|ref|ZP_08104258.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326]
 gi|323315669|gb|EGA68703.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326]
          Length = 872

 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 111/182 (60%), Gaps = 6/182 (3%)

Query: 337 REKMAKLREE----IAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSM 391
           R++ AK   E    IA QKA E +L K     E   +AK + LA MSHEIR+PL G++ M
Sbjct: 343 RDEFAKFATELNYTIAKQKAYEQDLVKAKEHAEAANQAKSIFLANMSHEIRTPLNGIIGM 402

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
            EIL+++ L   Q+ +L  + +S   +L LINDILDLSK+ESG + L       RE++  
Sbjct: 403 TEILADSHLSAAQKDILNDVDASSHALLVLINDILDLSKIESGNLALSPHMASVREIIFD 462

Query: 452 VLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLY 510
            +    + +L++ + L  + AD VP  +  D  R++Q+L NL+SNAIKF+P+G V +++ 
Sbjct: 463 TVNMVNSHALKQEVTLHVEFADHVPNHLELDEFRVKQVLMNLMSNAIKFSPQGNVIMRVS 522

Query: 511 VV 512
           VV
Sbjct: 523 VV 524



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 22/140 (15%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL 919
           ++L+VEDN +N  +A   + ++G    + +NG+EAV+ V+  Q Y  ILMD  MP+MDGL
Sbjct: 749 RVLIVEDNLMNQKIASFFLSKVGIDFTIASNGLEAVNLVKAEQEYCAILMDCMMPIMDGL 808

Query: 920 KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
            AT+ IR +E+            EQ  P         R+PI+A+TA+ L E  + CF  G
Sbjct: 809 TATQQIRQWEE------------EQNRP---------RVPIVALTASVLPEEIQSCFDAG 847

Query: 980 MDSFVSKPVTFQKLKECLEQ 999
           MD+++ KP   ++L +  E+
Sbjct: 848 MDAYLPKPYKSKQLFDIFER 867



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 49/73 (67%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +  +V DTG+GI E+ L  +F+ + Q      R++GGTGLGL IC QLV+LM G+++V S
Sbjct: 529 LSIEVADTGVGIAEDKLAEIFKPFTQEDGTITRRFGGTGLGLTICNQLVDLMNGQISVES 588

Query: 652 KVHCGSTFTFILP 664
            +  GS FTF LP
Sbjct: 589 GLGEGSRFTFTLP 601


>gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
 gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
          Length = 969

 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 101/176 (57%), Gaps = 2/176 (1%)

Query: 336 KREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEI 394
           K E+++ L  +I  QK  ET L       E   RAK   LA MSHEIR+P+  V+ M E+
Sbjct: 564 KAEQVSGLVFDITEQKEVETTLRLAREQAESANRAKSDFLAAMSHEIRTPMNAVIGMGEV 623

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
           L  TKLD+EQR  +  +  +G+ +L LIN ILDLSK+ESG M+L    F   ++V    Q
Sbjct: 624 LLETKLDQEQRHYIETLQHAGEALLDLINAILDLSKIESGRMELVEQDFDLHKMVVETCQ 683

Query: 455 TAAASLQKI-LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
                 +K  + L  +  +  P  + GD  RIRQIL NLI NA+KFT EG V +++
Sbjct: 684 LFQVQCRKQGIELNLNWEESNPTYIHGDQARIRQILFNLIGNAVKFTDEGSVTVEI 739



 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 1/85 (1%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           + D+GIGIP +   T+F+K+ Q  +  +R++GG+GLGL IC+ LVE M GR+ V S+   
Sbjct: 752 ITDSGIGIPADKQETIFQKFSQADSSLSRRHGGSGLGLTICRHLVEHMKGRIWVDSEEGQ 811

Query: 656 GSTFTFILPYQ-VSPIEENSDDPDD 679
           GS F+F LP +  +P  E   +P D
Sbjct: 812 GSCFSFTLPCRPTAPKAEIISNPHD 836



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 28/152 (18%)

Query: 844 PSSSSAEV------PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
           P++  AE+       + K   K +ILLVED+K N ++ ++ +K+  HS+ V  +G EA+ 
Sbjct: 823 PTAPKAEIISNPHDAQQKQSKKARILLVEDSKDNQILIRTYLKREPHSLVVAWDGEEALT 882

Query: 898 AVQCQN-YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
                  +DLI MD+ MP+MDG  AT  IR+ E                      + H  
Sbjct: 883 RFNEDGPFDLIFMDMQMPIMDGYAATAHIRALE---------------------QARHLT 921

Query: 957 RIPIIAMTANALSESAEECFANGMDSFVSKPV 988
             PI+A+TA+AL    +     G ++ ++KP+
Sbjct: 922 ATPIVALTAHALQGDEQRSLQAGCNAHLTKPI 953


>gi|319411626|emb|CBQ73670.1| related to histidine kinase (C-terminal fragment) [Sporisorium
            reilianum SRZ2]
          Length = 1516

 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 131/263 (49%), Gaps = 23/263 (8%)

Query: 255  HEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVF 314
            ++  ++G++  E++   G+       RE + + L  +  +  E E+ G + F     P  
Sbjct: 756  NQRSMIGRSIYEVWDSPGI-------REAIGRALNGE-SVVQEMEIEG-RWFRTQYTPQR 806

Query: 315  SKS-------GETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEET 367
             +S       G  IGV    MD+TD+ R   K+ +   E +   A ET   +   I  E 
Sbjct: 807  EESYEHDANEGAIIGVVGASMDITDRRRAEHKLEESMHERSRALAAETAAKEASRIKSE- 865

Query: 368  MRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILD 427
                  LA MSHEIR+P+ GV+ ++E+L +T L +EQR     +  S D +L +INDILD
Sbjct: 866  -----FLANMSHEIRTPIAGVIGLSELLCDTPLSKEQRDFAENIQRSADALLTVINDILD 920

Query: 428  LSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIR 486
              K+E G M LE   F    V+    +    A+ +K L    +       +++GD  R+R
Sbjct: 921  FEKLELGKMDLEKTAFNLNVVIMDTQKMLTFATQKKGLEFRNECQLSFTGQIVGDAGRLR 980

Query: 487  QILTNLISNAIKFTPEGKVGIKL 509
            Q+LTNL++NAIKF   G + +++
Sbjct: 981  QVLTNLLTNAIKFAAAGAITLRV 1003



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 22/153 (14%)

Query: 849  AEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLIL 908
            +E P  +P+    IL+ EDN IN  +A   +K++G S  V  +G+EA+  V    YDLIL
Sbjct: 1122 SENPLQRPRKDIWILVAEDNLINAQIALKTLKKMGFSCKVAKDGLEAIEEVGKHPYDLIL 1181

Query: 909  MDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANAL 968
            MD  MP  DG +AT+ +R  +                      S   +  PIIAMTA+A+
Sbjct: 1182 MDCHMPNCDGYEATKRLRKSD----------------------SVDVRTTPIIAMTASAI 1219

Query: 969  SESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                E+C A GM  ++SKPV    L+  L ++ 
Sbjct: 1220 RGDREKCLAAGMSDYLSKPVKSAALESTLVKWL 1252



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 2/90 (2%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +  +V DTG GI +  L  LF+ + Q     AR++GGTGLGL+ICK LV+LMGG + + S
Sbjct: 1015 VHFEVRDTGCGISQTTLKKLFQPFSQADPSFARRFGGTGLGLSICKNLVDLMGGTIGLES 1074

Query: 652  KVHCGSTFTFILPYQVSPIEENSDD--PDD 679
              + GS   F +P++   + E S D  PDD
Sbjct: 1075 VENKGSNAWFSIPFEKVGVHETSGDSSPDD 1104


>gi|239908609|ref|YP_002955351.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798476|dbj|BAH77465.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 655

 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 123/206 (59%), Gaps = 20/206 (9%)

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
           + P+ S+ GE +G+  + +D+TD         + R E  ++ AKE          E   +
Sbjct: 237 LAPIRSR-GEIVGIMGVNVDLTD---------RRRMEHDLRAAKEG--------AEAANQ 278

Query: 370 AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           AK + LA MSHE+R+PL G++S  ++L  T LD EQ++ L   I S   + QL++DILDL
Sbjct: 279 AKSEFLANMSHEVRTPLNGILSTLQLLGTTSLDAEQQECLFAAIKSSHRLTQLLSDILDL 338

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
           +K+E+G +    ++F   ++ + VL+  A A+  K + L   I+DD+P  ++GD +R+RQ
Sbjct: 339 TKIEAGKLPCRESRFEFGQLRRAVLELFAKAASDKDVGLVFTISDDMPRWLVGDEVRLRQ 398

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVVP 513
           IL NL+ NA+KFT +G+V ++   +P
Sbjct: 399 ILFNLVGNAVKFTLQGQVTVEAKALP 424



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 21/134 (15%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           +IL+ ED  +++M  + M+++ GH +   +NG EA+  +  Q  DLILMDV MPV+DG+ 
Sbjct: 530 RILMAEDEAVSLMAGRRMLEKAGHHVVPAHNGQEALKLLAEQTIDLILMDVQMPVLDGVA 589

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           A R IR            +AG E+A            +PIIA+TA A+    ++  A  +
Sbjct: 590 AARRIRQ----------GQAGPEKA-----------GVPIIAVTAYAMPGDKDKFLAARI 628

Query: 981 DSFVSKPVTFQKLK 994
           D +V+KP+   +L+
Sbjct: 629 DDYVTKPMGLVELE 642



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIP++ L  +F  + Q+   + R++ G GLGL+I ++LV ++GG L V      
Sbjct: 437 VSDTGIGIPDDQLQYVFEPFSQIEGSYTRRFQGAGLGLSIVRKLVRMLGGELAVDGTEGG 496

Query: 656 GSTFTFILPYQ 666
           G+T    +P +
Sbjct: 497 GTTMYCSIPLK 507


>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Coleofasciculus
           chthonoplastes PCC 7420]
 gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Coleofasciculus
           chthonoplastes PCC 7420]
          Length = 684

 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/141 (46%), Positives = 93/141 (65%), Gaps = 1/141 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LATMSHEIR+PL  V+ +  IL NTKLD  Q+ L+  +  SG+ +L  IND+LD +K+
Sbjct: 160 EFLATMSHEIRTPLNAVIGLTGILENTKLDAHQQDLVETIRQSGETLLITINDVLDFAKI 219

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ESG ++LE   F  R+ ++  +   A  ++QK L L   I  +VP  ++GDV R+RQIL 
Sbjct: 220 ESGKLELEFKPFNLRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTLVGDVTRLRQILI 279

Query: 491 NLISNAIKFTPEGKVGIKLYV 511
           NL+SNAIKFT  G+V + + V
Sbjct: 280 NLLSNAIKFTDVGEVSVSVKV 300



 Score = 99.8 bits (247), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 80/148 (54%), Gaps = 26/148 (17%)

Query: 841 SQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ 900
           SQ  S  S + P  +  P  +ILL EDN +N  V   ++K+LG+  D+V+NG E + A+ 
Sbjct: 543 SQPASPESGDSPLAQQLPL-RILLAEDNIVNQKVELLLLKRLGYQADLVSNGQEVLDAIS 601

Query: 901 CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
            Q+YD+ILMDV MP MDGL ATR I                           N+ +R  I
Sbjct: 602 RQSYDVILMDVQMPEMDGLTATRYI-------------------------CQNYSQRPWI 636

Query: 961 IAMTANALSESAEECFANGMDSFVSKPV 988
           IA+TANA+ E  E C   GMD ++SKP+
Sbjct: 637 IALTANAMQEDRETCLKAGMDDYISKPI 664



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 3/96 (3%)

Query: 583 DEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642
           D     TV I   V DTGIGIP++    LF+++ Q+ +   R+YGGTGLGL I KQL E+
Sbjct: 313 DSHTSPTVCILFSVKDTGIGIPKDRFNRLFQRFSQLDSSTTRQYGGTGLGLIISKQLSEM 372

Query: 643 MGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPD 678
           MGG + V S +  GSTF+F +   V  +++++ +P+
Sbjct: 373 MGGEIWVDSTLGEGSTFSFCV---VLSVDQDASEPN 405



 Score = 45.4 bits (106), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%)

Query: 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
           K  IL+V+D   N+ +  +M+   G+ +  V +G +A++AV     DLIL+D+ MP MDG
Sbjct: 10  KGDILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAVNTDPPDLILLDIKMPEMDG 69

Query: 919 LKATRLIRSFEDTG 932
            +  + +++ E T 
Sbjct: 70  YEVCQRLKADEKTA 83


>gi|94264477|ref|ZP_01288265.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
 gi|93455108|gb|EAT05332.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
          Length = 876

 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 154/314 (49%), Gaps = 38/314 (12%)

Query: 302 GSKTFLIYVEPVFSKSGETIGVNYMGMDVT------DQVRKREKMAKLREEIAVQKAKET 355
           GS+ ++ +      + GE IG+  +G D+T      DQ+R+ ++     EE+   +  E 
Sbjct: 390 GSRVWVSWTNRAIYEDGELIGLLCIGNDITRLKEAEDQLRRHQQEL---EEMVNARTDEL 446

Query: 356 ELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLD---REQRQLLGVMI 412
            L     +   +    + L+ MSHEIR+PL  ++      SN  L+   +  RQ L ++ 
Sbjct: 447 -LTANAELNRVSAYKSRFLSAMSHEIRTPLQTIIG----FSNLALEGGSQPPRQYLEMIK 501

Query: 413 SSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIA 471
           ++GD +L+LIN ILDL+K+ESG ++L    F+P E +   L+  A A+ Q+ L  +  I 
Sbjct: 502 TAGDTLLELINGILDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSID 561

Query: 472 DDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKE-------GLKQ 524
             VP EV+GD  R+ Q+L NL+ NA+KFT EG++ + +      P A +       G  +
Sbjct: 562 PAVPGEVVGDPARLTQVLVNLVGNALKFTEEGEIAVSVR-----PAADDADRRPTVGAGR 616

Query: 525 KSKAYQSATDAVKEEKH----QPKSQTASDQNG--FHDKKHGEGYQDHKHDDDPGTPVSH 578
              A  +A+DA     H       S  A++Q G  F+    GEG          G  ++ 
Sbjct: 617 AEVAPPAASDATSGLLHFTVRDSGSGIAAEQQGRIFNRFAQGEGAASPHGGHGLGLAIAA 676

Query: 579 GNSMDEDLEATVWI 592
             S+ E +   +W+
Sbjct: 677 --SLVELMGGEIWL 688



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 22/132 (16%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           IL+ EDN+ N  +   +++  GH +   NNG EAV   + +   LILMD+ MP +DG +A
Sbjct: 757 ILVAEDNEFNRQLLTDLLQNHGHRVLAANNGREAVEIYRDKPCQLILMDMMMPELDGPEA 816

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
           TR IR  E  G                        RIPII +TA    E  ++C A GMD
Sbjct: 817 TRAIRRLEAQGG----------------------SRIPIIGVTAGTQPEEIQKCLAAGMD 854

Query: 982 SFVSKPVTFQKL 993
              +KPV  + +
Sbjct: 855 CCFTKPVDIKTM 866



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+G GI       +F ++ Q     A  +GG GLGLAI   LVELMGG + + S+   
Sbjct: 636 VRDSGSGIAAEQQGRIFNRFAQ-GEGAASPHGGHGLGLAIAASLVELMGGEIWLESRPGE 694

Query: 656 GSTFTFILPYQVSPIEENS 674
           GS+F F + Y++ P  E +
Sbjct: 695 GSSFHFTIAYRLPPPRERA 713


>gi|365886090|ref|ZP_09425058.1| putative Histidine kinase [Bradyrhizobium sp. STM 3809]
 gi|365338438|emb|CCD97589.1| putative Histidine kinase [Bradyrhizobium sp. STM 3809]
          Length = 829

 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 133/272 (48%), Gaps = 23/272 (8%)

Query: 259 ILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSG 318
           + G  +  I S   + E  DF RE    G P  R     TE           + V  + G
Sbjct: 308 VFGADNRLILSNRRLAELYDFDRESFGPGTPLSRFTELSTERGIEFDLSSSTDTVRLRGG 367

Query: 319 ETIGVNYMGM----------DVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETM 368
            ++ V               D+T++VR  E + +   E+   + +  E    +  T E +
Sbjct: 368 RSVAVKRAATPDGGWVSVHEDITERVRAAEILDERLAELTQTRNRLEEQRNELIATGEAL 427

Query: 369 -----------RAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGD 416
                      RAK   LA MSHEIR+P+TG++ M  +L++T+LD+EQ+ L  +   S  
Sbjct: 428 SAAKDAAEAASRAKSDFLAIMSHEIRTPMTGMIGMIGLLADTRLDQEQKDLTDIARLSAR 487

Query: 417 LVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA-AASLQKILMLEGDIADDVP 475
            +L ++NDILD SK+E+G +  EA  F   +VV  VL      + ++ L L+G +A+++P
Sbjct: 488 NLLTVVNDILDFSKLEAGQLTPEAIDFNVEDVVGSVLALMEPRARERGLGLKGSLAEEMP 547

Query: 476 IEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
             + GD  RI QIL NL+ NA+KFT  G V I
Sbjct: 548 RRLRGDPHRISQILLNLVGNALKFTERGTVEI 579



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 81/140 (57%), Gaps = 23/140 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +IL+ EDN IN  +   ++ + G+  D+V NG +AV AV+ + YDL+LMD+ MP MDG+ 
Sbjct: 691  EILVAEDNDINQNLIARLLARRGYRADMVGNGQDAVAAVKRKRYDLVLMDMQMPEMDGVT 750

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR+IR  + +     AA+                  +P++A+TANAL      C A GM
Sbjct: 751  ATRVIRDLDGS-----AAD------------------VPVVALTANALPSQRAVCIAAGM 787

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D F++KP+  ++L + + ++
Sbjct: 788  DDFLTKPIQPERLYDAILRW 807


>gi|425767335|gb|EKV05909.1| Sensor histidine kinase/response regulator, putative [Penicillium
            digitatum PHI26]
 gi|425779808|gb|EKV17837.1| Sensor histidine kinase/response regulator, putative [Penicillium
            digitatum Pd1]
          Length = 1829

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 108/172 (62%), Gaps = 2/172 (1%)

Query: 346  EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
            +I  +K  E ELNK +      M +K +  + MSHEIR+PL G++     + +T+LD +Q
Sbjct: 1124 DINDRKNLERELNKAMQQLNHQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQLDSDQ 1183

Query: 405  RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKI 463
            R++L  + +S   + +L+++ILD+S+VE+G M +  + F  R +++ V+ T A+ ++ K 
Sbjct: 1184 RRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSIVKSWFHIRSMIEDVIDTIASRAIDKG 1243

Query: 464  LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
            L +   I +D+P  VIGD  RIRQ+L NL+ NA+KFT +G++ I   +  EP
Sbjct: 1244 LEINYLIGEDLPSMVIGDRFRIRQVLINLLGNAVKFTAQGEIHICCDMYREP 1295



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 24/140 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMPVMD 917
            +ILLVED++ N  V    + ++    +  +NG+E  + V  +    Y LI+ D+ MP+ +
Sbjct: 1682 RILLVEDDETNRDVMLKYLDKIKLMSETASNGLECTNMVLSKEPGYYSLIICDIQMPIKN 1741

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G    R IR +E                       NH+ +IPI+A++ANA+++  E    
Sbjct: 1742 GYDTCREIREWEQM---------------------NHYPQIPIMALSANAMTDQIENAAR 1780

Query: 978  NGMDSFVSKPVTFQKLKECL 997
             G + +V+KP+   +L + +
Sbjct: 1781 AGFNDYVTKPIRHNELGKMM 1800



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 19/102 (18%)

Query: 579  GNSMDEDLEATVWIRCDVY-------------------DTGIGIPENALPTLFRKYMQVS 619
            GN++    +  + I CD+Y                   DTG G        L +++ Q+ 
Sbjct: 1274 GNAVKFTAQGEIHICCDMYREPSANLNDTQAFMNFEVVDTGKGFSSQDAERLMQRFSQLG 1333

Query: 620  ADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
             +  ++  G+GLGL + KQLVE+ GG+LT +SK   G+ F+F
Sbjct: 1334 ENGTQQNAGSGLGLFLSKQLVEMHGGKLTPSSKEGQGAKFSF 1375


>gi|375006596|ref|YP_004975380.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
 gi|357427854|emb|CBS90802.1| Hybrid sensor histidine kinase [Azospirillum lipoferum 4B]
          Length = 1159

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 105/178 (58%), Gaps = 7/178 (3%)

Query: 336 KREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEI 394
           +R     LR+ +  Q+  E  L +     ++  RAK + LATMSHEIR+P+ GV+    +
Sbjct: 554 RRYVTGALRD-VTAQREIEASLRRAKEAADQANRAKGEFLATMSHEIRTPMNGVLGALAL 612

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK---H 451
           +    LD EQRQLL V   SG  +LQ+I+DILDLSK+E+G  ++E   F  R V++    
Sbjct: 613 VDGPNLDEEQRQLLDVANRSGKALLQIIDDILDLSKLEAGKAEVEPVDFELRAVMRDCID 672

Query: 452 VLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           +L+  A    + L+L  ++A  VP  V  D+ RIRQ+L NL+ NA+KFT    V +++
Sbjct: 673 LLEPTAGG--RGLILTREVAPAVPDRVRADLRRIRQVLVNLVGNALKFTQRRGVAVRV 728



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 37/180 (20%)

Query: 831 CEMQEKP-DRISQSPSSSSAEVPETKPKPKPK------------ILLVEDNKINVMVAKS 877
           CE    P D +  +P +  A  P+  P+  PK            +L+ EDN+IN  +  +
Sbjct: 815 CEPAADPCDDVPTAPCAPEA-APQGAPQGAPKGGPGTEETGGLRVLVAEDNEINRDIVVT 873

Query: 878 MMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937
           M+++ GH +  V +G++AV  V+   +DL+LMDV MPVMDG+ ATR IR           
Sbjct: 874 MLRRGGHRVTAVEDGLQAVRLVEEDRFDLVLMDVQMPVMDGVTATRHIR----------- 922

Query: 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
                  AMP   S     R+PI+A+T N +     E  A GM ++++KP+    L E L
Sbjct: 923 -------AMPGPAS-----RLPIVALTGNVMPGHRAEYLAAGMTAYLTKPIVSADLFEIL 970



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 59/88 (67%), Gaps = 2/88 (2%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           + ++R DV DTGIGIPE+  PTLFR++ Q  +   R++GGTGLGLAI ++LV LMGGR+ 
Sbjct: 739 SFFLRFDVADTGIGIPEDVQPTLFRRFTQGDSSTTRRFGGTGLGLAISRELVTLMGGRIG 798

Query: 649 VTSKVHCGSTFTFILPYQVSPIEENSDD 676
           V S    GSTF F +  +  P  +  DD
Sbjct: 799 VVSAEGKGSTFWFTVCCE--PAADPCDD 824


>gi|323499089|ref|ZP_08104069.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323315924|gb|EGA68955.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 774

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 115/203 (56%), Gaps = 13/203 (6%)

Query: 316 KSGETIGVNYMGMDVTDQV-RKREKM-AKL-REEIAVQKAK-ETELNKTIHITEETMRAK 371
           +SG    +N+ G D   QV R  + M AKL R+ I +  A+ + E+              
Sbjct: 191 QSGPGFQLNHQGTDELSQVARAFDDMSAKLERDYIDLNAARADAEMAND--------SKS 242

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA+MSHEIR+P+ GV+ +  IL  T L +EQR+L+     SG  +L +INDILD +++
Sbjct: 243 RFLASMSHEIRTPMNGVLGILNILEETNLSKEQRKLVTTATESGHFLLSVINDILDFTRM 302

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           ES  + LE+  F     V  V+      +  + L++   I  DVPI V+GD  RI+QIL 
Sbjct: 303 ESNTLILESKPFDLHRCVTSVVDGFYPTATSQDLLIHCYIEPDVPIHVMGDENRIKQILL 362

Query: 491 NLISNAIKFTPEGKVGIKLYVVP 513
           NLI NAIKFT +G V IK+ +VP
Sbjct: 363 NLIGNAIKFTHDGSVRIKMSLVP 385



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 23/167 (13%)

Query: 836  KPDRISQSPSSSSAEV-PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            K D +S+      AE+ P    +    IL+ EDNK N +V + M K+L   +D+  NG+ 
Sbjct: 465  KLDTVSELNPHVDAELKPNNLIRNDLSILVAEDNKANQLVIREMFKRLDIEVDIAENGII 524

Query: 895  AVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954
            A+  V+   YDLI MD+ MP MDG++A R IRS  D                 +S ++  
Sbjct: 525  ALERVKEYRYDLIFMDISMPKMDGMQACREIRSLAD----------------QTSATT-- 566

Query: 955  FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
                PIIA+TA++L+   E+  A+GM+ ++SKPV   +L E +  + 
Sbjct: 567  ----PIIALTAHSLAGDKEKFLASGMNDYISKPVRLSQLVEKINLFI 609



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 11/114 (9%)

Query: 584 EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
           +D +AT  I+C++ DTGIGI ++A+  LF ++  V   ++R   G+GLGLAICK+L  LM
Sbjct: 387 DDSQAT--IQCEISDTGIGISKSAIDYLFDEFTMVDQTYSRSKEGSGLGLAICKRLCNLM 444

Query: 644 GGRLTVTSKVHCGSTFTFIL---------PYQVSPIEENSDDPDDLSDMADQDS 688
            G + V S+   GSTFTF +         P+  + ++ N+   +DLS +  +D+
Sbjct: 445 DGDVKVQSEPKVGSTFTFTIKLDTVSELNPHVDAELKPNNLIRNDLSILVAEDN 498


>gi|254465258|ref|ZP_05078669.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
 gi|206686166|gb|EDZ46648.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
          Length = 985

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 118/205 (57%), Gaps = 2/205 (0%)

Query: 314 FSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-Q 372
           ++KSGE +  +   + VT    + + +  +  +I   K +E EL +     E   RAK +
Sbjct: 551 YTKSGEEVWFDTNIVPVTGADGEVDLIIGIERDITRSKQRERELAEAKLAAEHADRAKSE 610

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+P+ G++ MA++L+  +L  + +Q +  + SS   +L++INDILDLS++E
Sbjct: 611 FLANMSHEIRTPMNGIIGMADLLAEAELTADDQQNVETIRSSAQALLKIINDILDLSRLE 670

Query: 433 SGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G   +    F  R+ +          +L+K L ++   A+ +P  + GD  R+RQIL N
Sbjct: 671 AGKFAISREDFNLRDCIGGAADLFRPKALEKGLSMQVSYANGLPDRLHGDDGRLRQILVN 730

Query: 492 LISNAIKFTPEGKVGIKLYVVPEPP 516
           LI NA+KFTP+GK+ +++    E P
Sbjct: 731 LIGNAVKFTPDGKIAVRVSQAGEDP 755



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 32/160 (20%)

Query: 832 EMQEKPDRISQSPSSSSAEVPETKPK-PKPKILLVEDNKINVMVAKSMMKQLGHSIDV-- 888
           E+Q  P   SQ+  +++  +PE  P+ P  ++LL EDN+ N ++ +  ++  G  +D+  
Sbjct: 828 ELQMVP--ASQAVDATAPALPEAPPQLPPCRVLLAEDNQTNRLLVRKFLR--GQPVDLQE 883

Query: 889 VNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948
             NG  AV   +    D+ILMD+ MP +DG+ AT+ IRS              I Q +  
Sbjct: 884 AGNGRAAVEMCRELEPDVILMDMSMPELDGISATQEIRSLP------------IRQPV-- 929

Query: 949 SGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
                      I+A+TANA S   + C   GM+ F++KPV
Sbjct: 930 -----------IVALTANAFSSDRQACLDAGMNRFLAKPV 958



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 594 CDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKV 653
            +V D+GIGI E     +F ++ Q  A   + +GGTGLGL I   L + MGG +TV S+ 
Sbjct: 760 VEVEDSGIGISETQAKHIFDRFTQADAATTKAFGGTGLGLTISSMLAKRMGGGITVQSQP 819

Query: 654 HCGSTFTFILPYQVSPIEENSD 675
             GS F   L  Q+ P  +  D
Sbjct: 820 GKGSCFR--LELQMVPASQAVD 839


>gi|1679757|gb|AAB19216.1| two-component histidine kinase CHK-1 [Glomerella cingulata]
 gi|1679760|gb|AAB19217.1| two-component histidine kinase CHK-1 [Colletotrichum
           gloeosporioides]
          Length = 745

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 94/143 (65%), Gaps = 2/143 (1%)

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + +L +IN
Sbjct: 105 KEAMESKSRFLSNMSHEIRTPLIGISGMVSFLQDTTLNEEQRDYTNTIQTSANSLLMIIN 164

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
           DILDLSKV++G+MKL+   F  R +++ V +  +  ++ K L L   + +DVP  V GD 
Sbjct: 165 DILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIVEEDVPAWVKGDK 224

Query: 483 LRIRQILTNLISNAIKFTPEGKV 505
           +RIRQ+L N+I NAIKFT EG+V
Sbjct: 225 VRIRQVLLNVIGNAIKFTAEGEV 247



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 19/118 (16%)

Query: 579 GNSMDEDLEATVWIRCDVY-------------------DTGIGIPENALPTLFRKYMQVS 619
           GN++    E  V+ RC ++                   DTG G  +     +F+ + Q+ 
Sbjct: 236 GNAIKFTAEGEVFSRCRIFTNTKSALSNDEIMLEFAVIDTGRGFTKEEADLIFKPFSQID 295

Query: 620 ADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
               R++GG+GLGL I +QLVEL GG++  T+    GSTFTF   + +    ++ D P
Sbjct: 296 GSSTRQHGGSGLGLVISRQLVELHGGKMEGTAVPGKGSTFTFTAKFALPTSADHPDGP 353



 Score = 47.8 bits (112), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 24/113 (21%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMPVMD 917
           K+LLVEDN +N  V K  +K++G  ++VV +G E    V  ++   + LIL D+ MP  D
Sbjct: 651 KVLLVEDNPVNQKVLKKYLKKVGVEVEVVADGAECTETVFSRSHSYFSLILCDLHMPRKD 710

Query: 918 GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970
           G +A R IR +E         E G             FK++PIIA++AN +S+
Sbjct: 711 GYQACREIRQWEK--------ERG-------------FKKLPIIALSANVMSD 742


>gi|145300169|ref|YP_001143010.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852941|gb|ABO91262.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1142

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 106/174 (60%), Gaps = 4/174 (2%)

Query: 342 KLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKL 400
           +LR+EI  ++  E  L +     E     K + LATMSHEIR+P+  +V MAE LS T L
Sbjct: 527 RLRQEILRRRQVEEALARAKESAEHAAGKKAEFLATMSHEIRTPMNSIVGMAEQLSFTSL 586

Query: 401 DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL 460
           D EQRQ++ ++    + +LQLI ++LD SK++ G M L  + F  RE++  VL   ++ +
Sbjct: 587 DLEQRQMVAIINQGAEGLLQLIGNVLDYSKLDVGKMALVPSSFLLRELIDSVLTMISSEV 646

Query: 461 Q-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG--KVGIKLYV 511
           Q K L     + D+V     GDVLR++Q+L NL+SNAIKFT  G  ++ IKL V
Sbjct: 647 QRKGLQCYLRVDDEVGARFTGDVLRLKQVLFNLVSNAIKFTERGFIELSIKLDV 700



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 25/149 (16%)

Query: 852  PETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDV 911
            P ++P P  ++L+VED+ +N ++ +  +KQL    D+  NG +A+  +   +YDLIL D 
Sbjct: 897  PTSRPLPY-RLLVVEDHHLNQVLVQRQLKQLNLVCDLAENGQQALAMLAQHSYDLILCDC 955

Query: 912  CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971
             MPVMDG   T  +R+ E                           R+PIIAMTAN + E 
Sbjct: 956  QMPVMDGYDFTCQVRTVEG------------------------LARLPIIAMTANVMPEQ 991

Query: 972  AEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            A+ C A GM+  + KPV    L++ L ++
Sbjct: 992  AQRCLAAGMNDVLGKPVLLDGLRQILMKW 1020



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIG+   A   +F  + Q      R YGGTGLGL+I   L ELMGG L + S    
Sbjct: 712 VQDTGIGMSTEAQARIFNAFEQADGATTRSYGGTGLGLSISHTLAELMGGELRLESAPGL 771

Query: 656 GS--TFTFILPYQV 667
           G+    +  LP+++
Sbjct: 772 GTFIGLSVTLPFEL 785


>gi|384486106|gb|EIE78286.1| hypothetical protein RO3G_02990 [Rhizopus delemar RA 99-880]
          Length = 2359

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/249 (33%), Positives = 136/249 (54%), Gaps = 31/249 (12%)

Query: 292  REITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAK-------LR 344
            RE+  E +L G +  ++ VE V+ +   T  VN M  ++T QVR   ++A          
Sbjct: 1742 REVGIEGKL-GVQAQVMDVEGVWREI--TSNVNTMASNLTTQVRAFAQIATAATTENDFS 1798

Query: 345  EEIAVQKAKE-----TELNKTIHITEETMRAKQM---------------LATMSHEIRSP 384
            + I V+ + E     T++N+ +    + ++  ++               LA MSHEIR+P
Sbjct: 1799 QLITVEASGEMDSLKTKINQMVGSLRDAIQKNRLAREAAELANRSKSEFLANMSHEIRTP 1858

Query: 385  LTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444
            + G++ M  +   T+L R+QR+ L ++ S  + +L +I+DILD+SK+E+G M +E   F 
Sbjct: 1859 MNGIIGMTSLTLETELTRQQRENLMIVSSLANSLLTIIDDILDISKIEAGRMNIETIPFS 1918

Query: 445  PREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
             R  +  VL+T A    QK L L   +   +P +VIGD LR+RQ++TNLI NA+KFT  G
Sbjct: 1919 LRSAIFSVLKTLAVKANQKKLDLIYHVDQSIPDQVIGDPLRLRQVITNLIGNAVKFTTRG 1978

Query: 504  KVGIKLYVV 512
            +V ++   V
Sbjct: 1979 EVVLRTRAV 1987



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 97/183 (53%), Gaps = 25/183 (13%)

Query: 821  TSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMM 879
            T   N PQ + ++ +    +      S   +P    K  P ++LL EDN +N  +A  ++
Sbjct: 2186 TGYINAPQNMADISD----VMLPALESHVALPSDASKTVPLEVLLAEDNDVNQKLAVRIL 2241

Query: 880  KQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939
            ++ GH + VV NG  AV A + Q +DLILMDV MPVM G +AT+ IR  E          
Sbjct: 2242 EKFGHHVSVVANGKLAVEAYESQYFDLILMDVQMPVMGGFEATQKIREIE---------- 2291

Query: 940  AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
                    +S S+ H   IPIIA+TA+A+    E+C   GMD +V+KP+ F +L   +++
Sbjct: 2292 -------KASASNRH---IPIIALTAHAMIGDREKCLEAGMDEYVTKPLRFPELIAAIKK 2341

Query: 1000 YFP 1002
            + P
Sbjct: 2342 FAP 2344



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 596  VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
            V DTGIGI E+ L  +F  + Q      R+YGGTGLGL+I + LV LMGG L V S+   
Sbjct: 2000 VSDTGIGIQEDKLHVIFDTFCQADGSTTREYGGTGLGLSISRHLVRLMGGDLWVESQYGR 2059

Query: 656  GSTFTF---ILPYQVS 668
            GS F F   +L + V+
Sbjct: 2060 GSEFFFTVHLLRFNVN 2075


>gi|367054702|ref|XP_003657729.1| hypothetical protein THITE_2123697 [Thielavia terrestris NRRL 8126]
 gi|347004995|gb|AEO71393.1| hypothetical protein THITE_2123697 [Thielavia terrestris NRRL 8126]
          Length = 2063

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 2/150 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + +L +IN
Sbjct: 1328 KEAMDSKGRFLSNMSHEIRTPLIGISGMVSFLQDTTLNEEQRDYTNTIQTSANSLLMIIN 1387

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSKV++G+MKL    F  R +++ V +  +  ++ K L L   + +DVP  V GD 
Sbjct: 1388 DILDLSKVDAGMMKLSYEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWVKGDR 1447

Query: 483  LRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
            +RIRQ+L N+I NAIKFT +G+V  +  VV
Sbjct: 1448 VRIRQVLLNVIGNAIKFTSQGEVFSRCKVV 1477



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 3/89 (3%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
            + +   + DTG G  E     +F+ + Q+     R++GG+GLGL I +QLVEL GG++  
Sbjct: 1489 IMLEFSIIDTGRGFTEAEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMVG 1548

Query: 650  TSKVHCGSTFTFILPYQVSPIEENSDDPD 678
            T+    GSTFTF   + + P E  +D PD
Sbjct: 1549 TAVPGEGSTFTFTARFGL-PTE--NDHPD 1574


>gi|189423631|ref|YP_001950808.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419890|gb|ACD94288.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 940

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L  +I+ +K  E  L +     E   RAK + LA MSHEIR+P+ G++SMA +L  T+L 
Sbjct: 537 LARDISERKKTEAVLQEAKERAEAASRAKTEFLANMSHEIRTPMNGIISMAHLLRMTELT 596

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL- 460
            EQ++ L  +  S   +L LI+DILD+SK+E+G ++LE A F  R  ++ V+ +    + 
Sbjct: 597 SEQQEYLASLQISSKNLLALISDILDISKIEAGKLELEYADFSVRATIEEVVASQMPRIT 656

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           QK L +  +++D +P  ++GD LR +QIL NL+ NAIKFT +G + I
Sbjct: 657 QKRLDICTELSDGLPEILLGDSLRFKQILLNLLGNAIKFTEQGGISI 703



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 28/170 (16%)

Query: 835 EKPDRISQSPSSSSAEVPETKPKPKPK-----ILLVEDNKINVMVAKSMMKQLGHSIDVV 889
           E P  + ++P+ ++  + E +P+P P+     +LL EDN+IN     +++ + GH +  V
Sbjct: 787 ELPFVVREAPAGTALRL-ECRPEPVPEGRPLVVLLAEDNQINARSMSAILTRSGHRVVTV 845

Query: 890 NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSS 949
           ++G +A        +D ILMDV MPVMDG++ATRLIR                 QA  +S
Sbjct: 846 DDGQKAFEQWHSNRWDCILMDVQMPVMDGVEATRLIR-----------------QAEQAS 888

Query: 950 GSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
           GS       P+IA+TA+A+    E   A G D +V+KPV  ++L   +EQ
Sbjct: 889 GSHT-----PVIALTAHAMQGDREWLMAEGFDGYVAKPVDVEQLFREIEQ 933



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 49/76 (64%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  + DTGIG+    L  +F  + Q  +   RKYGGTGLGL+IC++LVELMGGR+   S
Sbjct: 717 MRIMIADTGIGMSPEVLERVFSPFEQADSSTTRKYGGTGLGLSICRRLVELMGGRIWAAS 776

Query: 652 KVHCGSTFTFILPYQV 667
           +   GSTF   LP+ V
Sbjct: 777 RPGSGSTFFVELPFVV 792


>gi|258516891|ref|YP_003193113.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780596|gb|ACV64490.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 544

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 90/134 (67%), Gaps = 1/134 (0%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+P+  ++ MA++L  T L +EQR+ +G+  ++G  +L LINDILDLSKVE
Sbjct: 165 FLANMSHEIRTPMNAIIGMADLLWETSLTKEQREYVGIFRTAGQNLLNLINDILDLSKVE 224

Query: 433 SGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +G +KLE   F  +++V+  ++  +     K L L   I  DVP  V+GD  R++QIL N
Sbjct: 225 AGHLKLEQQDFNIKKLVEKTVEFMSVQANIKFLSLSYQIKPDVPGFVVGDQNRLQQILVN 284

Query: 492 LISNAIKFTPEGKV 505
           L+ NAIKFT +G+V
Sbjct: 285 LLGNAIKFTEKGEV 298



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 21/143 (14%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            + +ILLV+D+  N M+  + +K+  + ID+  NG  AV   +   YDL+LMD+ MPVMDG
Sbjct: 421  RRRILLVDDSGDNRMLIMAYLKRTCYEIDIAENGQLAVEKFRAGKYDLVLMDMQMPVMDG 480

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
              AT +IR  E                      +N+  R PIIA+TA AL E   + +  
Sbjct: 481  YTATSIIRENE---------------------KANNLTRTPIIALTAYALKEDVLKSYDA 519

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            G    ++KP+    L E + +Y 
Sbjct: 520  GCTDHLTKPIKKSVLLEAIHKYI 542



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 11/106 (10%)

Query: 587 EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
           E  V+++  V DTGIGI +     +F  + Q  A    K+GGTGLGL ICK+LVE MGG 
Sbjct: 309 EENVFLKFSVSDTGIGIEKEKSEIIFESFTQADASTTSKFGGTGLGLTICKRLVEAMGGH 368

Query: 647 LTVTSKVHCGSTFTFILPYQVS--PIEEN---------SDDPDDLS 681
           + V S++  GSTF F +  ++   P  EN         ++D  DLS
Sbjct: 369 IGVESEIEQGSTFFFSIQLKIGKEPALENGERDLQQQFTEDRSDLS 414



 Score = 47.0 bits (110), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%)

Query: 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
            K+LLV+D   N++V ++++         VN+G EA+  +   ++ L+L+DV MP MDG 
Sbjct: 7   AKVLLVDDRPQNLLVLENILVDQEVEFYKVNSGNEALALLLSHDFALVLLDVQMPGMDGF 66

Query: 920 KATRLIRSFEDT 931
           +   L+R  E T
Sbjct: 67  EIAELMRGIEKT 78


>gi|242280477|ref|YP_002992606.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123371|gb|ACS81067.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 791

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 110/184 (59%), Gaps = 16/184 (8%)

Query: 342 KLREEIAVQKAKETELNKTIHITEETMR---------------AKQMLATMSHEIRSPLT 386
           KL++E+ +++  E +LN  +     T+R                 Q LA +SHEIR+P+ 
Sbjct: 239 KLKDEVEIRRRAEKDLNAALENLSFTVRELEKSKDKSEKASQFKSQFLAMISHEIRTPMN 298

Query: 387 GVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446
            ++ M ++L  T+LD EQ   + +   SG+L+L++INDILD  ++ESG ++L    F P 
Sbjct: 299 AILGMGDLLLGTELDPEQMGYVEIFRGSGELLLKIINDILDFVQIESGQIELVPVPFDPS 358

Query: 447 EVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           + V+ V ++ A S   + + +  D+A  VP +V+GD +R+RQ+L N++SNA+K+T  G+V
Sbjct: 359 QDVQSVCKSVAHSAHARDIEVICDVAQGVPAQVVGDPVRVRQVLMNIVSNAVKYTSSGEV 418

Query: 506 GIKL 509
            + L
Sbjct: 419 EVCL 422



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 8/133 (6%)

Query: 584 EDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELM 643
           ED E  ++    V DTGIGIPE    +LF  ++Q     +R+YGG GLGLA   +L  LM
Sbjct: 429 EDFERLLFT---VRDTGIGIPEGQRESLFEGFVQADGLASREYGGVGLGLAAASRLAVLM 485

Query: 644 GGRLTVTSKVHCGSTFTFILPYQVS---PIEENSDDPDDLSDMADQDSVTDDVTAGFFQF 700
            G +   S+   GS F F +P++ S   P+   +D       + D +    +V A   + 
Sbjct: 486 DGEIRFESESGKGSIFYFSIPFKKSLYEPLRSVADFSGTRVLLVDDNYTVREVLAR--RL 543

Query: 701 QPRTLGSLFSSNG 713
           Q   + ++ +SNG
Sbjct: 544 QSFGIDAVMASNG 556



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 21/133 (15%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
           ILLVEDN  +  + +  +   G  I V  +G++A+   +  +YDL+ MD+ +PVMDG+ A
Sbjct: 661 ILLVEDNDNHRKILELFILDTGADITVAVDGLQALELFKDNSYDLVFMDLELPVMDGISA 720

Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
            + +R  E                     +S   K I I+A+ A A S +  +    G D
Sbjct: 721 VKRMREVEL--------------------NSERQKSI-IVAIAARAYSSNRTDSAQAGCD 759

Query: 982 SFVSKPVTFQKLK 994
            F+SKPV +  ++
Sbjct: 760 GFISKPVKWDTIR 772


>gi|171689512|ref|XP_001909696.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944718|emb|CAP70829.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2091

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 98/153 (64%), Gaps = 3/153 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + +L +IN
Sbjct: 1406 KEAMDSKSRFLSNMSHEIRTPLIGISGMVSFLQDTTLNEEQRDYTNTIQTSANSLLMIIN 1465

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSKV++G+MKL    F  R +++ V +  +  ++ K L L   + +DVP  V GD 
Sbjct: 1466 DILDLSKVDAGMMKLNFEWFHTRSLIEDVNELVSTMAIAKRLELNYVVEEDVPAWVKGDK 1525

Query: 483  LRIRQILTNLISNAIKFTPEGKVGIKLYV-VPE 514
            +RIRQ+L N+I NAIKFT +G+V  +  V VPE
Sbjct: 1526 VRIRQVLLNVIGNAIKFTSQGEVFSRCKVIVPE 1558



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 82/146 (56%), Gaps = 9/146 (6%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMPVM- 916
            K+LLVEDN +N  V    +K++G  +++  +GVE    V  +    Y LIL  VC+ V  
Sbjct: 1950 KVLLVEDNPVNQKVLSKYLKRVGVEVELAADGVECTDMVFGRGRGYYSLIL--VCLLVSK 2007

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR-IPIIAMTANALSESAEEC 975
            DG +A R IR++E     +   E      +P++ + N+  R +PIIA++AN +S+  E+C
Sbjct: 2008 DGYQACREIRAWEIQHLMED--ERTGRSFVPTNQNPNNKNRALPIIALSANVMSDVQEKC 2065

Query: 976  FANGMDSFVSKPVTFQKLKECLEQYF 1001
               G   +V+KPV F  L + L ++F
Sbjct: 2066 VEAGFSDYVAKPVDFINLSQALSKFF 2091



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 587  EATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646
            +A + +   V DTG G  E     +F+ + Q+     R++GG+GLGL I +QL EL GG 
Sbjct: 1564 KAEIMLEFSVIDTGRGFTEQEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLAELHGGT 1623

Query: 647  LTVTSKVHCGSTFTFILPYQVSPIEENSDDPD 678
            +  T+    GSTFTF   +    +  ++D PD
Sbjct: 1624 MNGTAVPGKGSTFTFTARFG---LPTDTDHPD 1652


>gi|451971012|ref|ZP_21924235.1| Signal transduction histidine kinase [Vibrio alginolyticus E0666]
 gi|451933117|gb|EMD80788.1| Signal transduction histidine kinase [Vibrio alginolyticus E0666]
          Length = 631

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 106/165 (64%), Gaps = 6/165 (3%)

Query: 348 AVQKAKE--TELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +V+K +E  TEL +     E   R K + LATMSHEIR+P+ G++ +A +L +TKLD +Q
Sbjct: 219 SVEKVREHQTELEEERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLGDTKLDPQQ 278

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQK 462
           ++ + ++ SS   ++ +I+DILD SKVE+G ++LE A +  R ++  V  L T  A  QK
Sbjct: 279 KEFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELENASYDLRRILDDVISLHTVKAK-QK 337

Query: 463 ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
            L L  DI   +P EV GD  R++Q+L NL+SNAIKFT  G V +
Sbjct: 338 NLQLLSDIDPHLPAEVQGDAARLKQVLNNLLSNAIKFTDRGHVKL 382



 Score =  103 bits (256), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 23/144 (15%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            +P +L+VED  +N  V + M+++LG  + V N+G EA+   + Q +DL+ MD  MPVMDG
Sbjct: 501  QPWVLIVEDTIVNQKVVRIMLEKLGVRVSVANHGEEALQLCEKQAFDLVFMDCQMPVMDG 560

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
               T  IR     G W                     K +PIIA++AN + E  + CF  
Sbjct: 561  FITTERIRQM---GEWG--------------------KHVPIIALSANVIKEDQQHCFDV 597

Query: 979  GMDSFVSKPVTFQKLKECLEQYFP 1002
            GM+ FV+KPVT  +L +  EQ+ P
Sbjct: 598  GMNEFVAKPVTKDRLHQIFEQFLP 621



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 53/90 (58%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           IR  V D+GIGI +     +F ++ Q      RKYGGTGLGLAI  QLV LMGG + +TS
Sbjct: 396 IRFRVVDSGIGIAKENQQAIFERFQQADGSTTRKYGGTGLGLAIGAQLVNLMGGEIQLTS 455

Query: 652 KVHCGSTFTFILPYQVSPIEENSDDPDDLS 681
           ++  GS F F +P  V      S+ P+ L+
Sbjct: 456 ELGLGSCFEFSIPVVVKARSTYSERPNVLT 485


>gi|110677757|ref|YP_680764.1| hybrid sensory histidine kinase [Roseobacter denitrificans OCh 114]
 gi|109453873|gb|ABG30078.1| hybrid sensory histidine kinase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 733

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 180/422 (42%), Gaps = 81/422 (19%)

Query: 587 EAT--VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMG 644
           EAT  V ++  V DTGIGIPE+ +  +F ++ QV ++  R++ GTGLGLAI K+L+++M 
Sbjct: 343 EATGKVILQIRVEDTGIGIPEDMIDHVFGEFNQVESERNRQFDGTGLGLAITKKLIKMMN 402

Query: 645 GRLTVTSKVHCGSTFTF---ILPYQVSPIEENSDDP--------DDLSDMAD-----QDS 688
           G++ +TS+   GS F F   + P     +   + DP        DD     D      + 
Sbjct: 403 GQIWLTSEEGVGSCFGFEIALEPTGPVTLAHPALDPGLRHVMVVDDFPLNRDILQRQLEE 462

Query: 689 VTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLP--NSIGFASAHKVNGFSETSYSFPSN 746
           +   VTA   Q     L  L SS        ++   N + FA   +  G ++      SN
Sbjct: 463 IGLKVTA--CQDAATALAMLDSSVDLVMVDHIMADVNGLQFAQTARKAGHTQQIILLSSN 520

Query: 747 NRQKETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPAT 806
           +      PL D+  +      L      +  + +P +    +  K     + + F +  T
Sbjct: 521 HGYASKDPLSDSVDIIAQRPYLRSDLFGWLETVKPVSNNNAAPDKADGAASPAVFSHRKT 580

Query: 807 ESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVE 866
            S S +       Q  +   P+K+                              +IL  E
Sbjct: 581 VSPSDA-------QPVEPTAPRKM------------------------------RILAAE 603

Query: 867 DNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIR 926
           DNK N +V   M+K L   +   N+G EAV A      DLI MD+ MP +DG +ATR IR
Sbjct: 604 DNKTNRLVFGKMIKALDIELQFANDGQEAVDAYPEFQPDLIFMDISMPRLDGKQATRAIR 663

Query: 927 SFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSK 986
             E +                   +S H   +PIIA+TA+A+S   ++    G+D +++K
Sbjct: 664 EIEKS-------------------TSAH---VPIIALTAHAMSGDDKDILEAGLDHYMTK 701

Query: 987 PV 988
           P+
Sbjct: 702 PL 703



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/143 (41%), Positives = 91/143 (63%), Gaps = 1/143 (0%)

Query: 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVE 432
            LA MSHEIR+P+ GVV MA++L+ T L  EQR  +  + +SG+ +L +IND+LD SK+E
Sbjct: 200 FLANMSHEIRTPMNGVVGMADVLTETPLSEEQRLYVDTIKNSGEALLVIINDVLDYSKIE 259

Query: 433 SGVMKLEAAKFRPREVVKHVLQTA-AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTN 491
           +  ++L    F   + +  VL+   + +  K ++L  D A  +  + IGD  R+RQILTN
Sbjct: 260 AEKLQLHPEPFNLEKSIHEVLRLLQSIARDKGILLSVDYALFLSSDFIGDPGRLRQILTN 319

Query: 492 LISNAIKFTPEGKVGIKLYVVPE 514
           L+ NA+KFT EG V +++   P+
Sbjct: 320 LLGNAVKFTTEGSVTVRVSGKPD 342


>gi|408481218|ref|ZP_11187437.1| periplasmic sensor hybrid histidine kinase [Pseudomonas sp. R81]
          Length = 928

 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 104/166 (62%), Gaps = 2/166 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+ +   E  L +     +    AK + LATMSHEIR+PL GV+   E+L+ T+LD +Q
Sbjct: 425 DISARTQIEAALEQARQSADAANEAKTLFLATMSHEIRTPLYGVLGTLELLARTRLDAQQ 484

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKI 463
           +  L  +  S   +LQLI D+LD+SK+E+G + LE ++F    +V+ V+Q  AAA+  K 
Sbjct: 485 KSYLHAIEGSSATLLQLICDVLDVSKIEAGQLALELSEFCVPTLVQEVVQGYAAAAHSKG 544

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L L   +   +P  +IGD  R+RQIL NL+SNA+KFT  G+V +++
Sbjct: 545 LQLYACLDPQLPRRLIGDASRVRQILNNLLSNAVKFTDSGRVVLRV 590



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 27/157 (17%)

Query: 844  PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
            P  +  E  + +P     IL+ EDN IN ++ +  +++LG S+++  +G +A+       
Sbjct: 791  PPQTRCEARDLRPL-HLHILVAEDNVINQLILRDQLEELGCSVELAGDGEDALARWHEGT 849

Query: 904  YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
            +D++L DV MP ++G +    +R    T                           PII  
Sbjct: 850  FDVVLTDVNMPRLNGYELAEALRRLGCT--------------------------TPIIGA 883

Query: 964  TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            TANAL      C A GM+  + KP T + L   L  Y
Sbjct: 884  TANALRGEEALCLAAGMNHCLVKPFTLRALSTVLAPY 920



 Score = 48.1 bits (113), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           V ++  + DTG GI       +F  + Q S  ++    GTGLGL IC +L  LM G L +
Sbjct: 600 VCLQWQISDTGKGIAPADQAFIFEPFYQ-SEGNSHVIAGTGLGLPICLRLTHLMNGTLRM 658

Query: 650 TSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMA 684
            S+   GS+F+  +P +    + + + P  L  +A
Sbjct: 659 VSEPGLGSSFSLTVPLE----QPSGNAPQSLQALA 689


>gi|449143379|ref|ZP_21774216.1| hypothetical protein D908_00459 [Vibrio mimicus CAIM 602]
 gi|449080990|gb|EMB51887.1| hypothetical protein D908_00459 [Vibrio mimicus CAIM 602]
          Length = 1053

 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEET 367
            Y    +++ G  + ++ +G+ +  ++  + + A    ++  +KA E ELN+     EE 
Sbjct: 237 FYEAETYTRDGNLVPID-LGVSIF-ELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEEA 294

Query: 368 MRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
           +  K M LA MSHEIR+P+  ++ M+ +   T+L  +QR  +  + SS  L+L +INDIL
Sbjct: 295 VEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHSSATLLLGIINDIL 354

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHV-LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           D SK+E+G + +E  +F   EV+ +V + T   +  K L L   +  ++P ++IGD LRI
Sbjct: 355 DFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGDPLRI 414

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
            Q++ NL++NA+KFT +G++ + + V    P
Sbjct: 415 GQVVINLVNNAVKFTEQGEISVNVQVGERQP 445



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 35/136 (25%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV----HAVQCQN-YDLILMDVCMPV 915
           ++LL EDN+IN  +A  +M+     + + NNG EA+    H+++ Q  +D+I MD+ MPV
Sbjct: 692 RVLLTEDNEINQQIALELMEAKELVVTIANNGKEALDHLAHSLETQQRFDIIFMDLQMPV 751

Query: 916 MDGLKATRLIRS---FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
           MDG +A R IRS    +DT                           P+IAMTA+A+ E  
Sbjct: 752 MDGYEAARHIRSTPEHDDT---------------------------PLIAMTAHAMVEER 784

Query: 973 EECFANGMDSFVSKPV 988
           E C + GM+  VSKP+
Sbjct: 785 ERCLSLGMNDHVSKPI 800



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 45/67 (67%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIG+ E     LF+ + Q      RKYGGTGLGL+I ++LVELM G ++VTS+  
Sbjct: 453 NVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSQPD 512

Query: 655 CGSTFTF 661
            GS FTF
Sbjct: 513 MGSCFTF 519


>gi|322420676|ref|YP_004199899.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127063|gb|ADW14623.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 815

 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/200 (38%), Positives = 119/200 (59%), Gaps = 22/200 (11%)

Query: 329 DVTDQVRKR-EKMAKLREEIAVQKAKET--------ELNKTI---HITEETMRA-----K 371
           D+  Q+++R EK+   R+E+  +  + T        ELN+T+    +++E   A      
Sbjct: 244 DMLVQIQQRDEKLEAHRQELEAEVQRRTAELSAANCELNQTVAELRVSKEAAEAASLAKS 303

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LA MSHEIR+P+ GV+ M  +L  + L  EQR+    + +SG+ +L +INDILD SK+
Sbjct: 304 QFLANMSHEIRTPMNGVLGMVSVLLESGLAGEQRRFAEAVRNSGESLLSIINDILDFSKI 363

Query: 432 ESGVMKLEAAKFRPREVVKHVLQTAAASLQK---ILMLEGDIADDVPIEVIGDVLRIRQI 488
           E+G M+LE A F  ++++  VL+  AA  Q+    + L+ D A  +P  V GD +R+RQI
Sbjct: 364 EAGRMELEPAPFDLQDLLGGVLEMFAAGAQRKGVTVSLQLDPA--LPRYVEGDPVRLRQI 421

Query: 489 LTNLISNAIKFTPEGKVGIK 508
           L NL+ NA+KFT  G V +K
Sbjct: 422 LVNLLGNAVKFTSRGSVQLK 441



 Score =  106 bits (264), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/164 (38%), Positives = 89/164 (54%), Gaps = 25/164 (15%)

Query: 843  SPSSSSAEV--PETKPKP--KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
            +P S + +V  PE +PK      IL+ EDN +N  V + M+ QLG  +++V NG  AV A
Sbjct: 530  APESLAHQVALPEGEPKLLFDASILVAEDNPVNQDVVRHMLGQLGCRVEIVENGELAVAA 589

Query: 899  VQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
               + Y L+ MD  MP MDG  ATR IR  E       A E G              +R+
Sbjct: 590  SGREGYHLVFMDCQMPQMDGFAATRAIRGRE-------AGEGG--------------RRL 628

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            PI+A+TANAL+   E C A GMD +++KP   ++L E L+++ P
Sbjct: 629  PIVALTANALAGDRELCLAAGMDDYLTKPFDCRQLAEVLQRWIP 672



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 46/77 (59%)

Query: 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
           W+R +V DTGIGI   A   +F  + Q      R YGGTGLGLAI +QL ELMGG L + 
Sbjct: 450 WLRFEVADTGIGIRPEAQAHIFESFSQADYSTTRTYGGTGLGLAISRQLAELMGGELGLQ 509

Query: 651 SKVHCGSTFTFILPYQV 667
           S+   GS F F +  +V
Sbjct: 510 SEYGVGSAFWFSVRLEV 526


>gi|398997231|ref|ZP_10700060.1| PAS domain S-box [Pseudomonas sp. GM21]
 gi|398124448|gb|EJM13958.1| PAS domain S-box [Pseudomonas sp. GM21]
          Length = 1328

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 178/433 (41%), Gaps = 95/433 (21%)

Query: 591  WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650
            W+R    D+GIG+       LF+ + Q  +   RKYGGTGLGLAI + LVELMGG + V 
Sbjct: 752  WVR----DSGIGMSTEQCSRLFQPFSQADSSTTRKYGGTGLGLAISRHLVELMGGSIWVE 807

Query: 651  SKVHCGSTFTF--------------------ILPYQVSPIEENSDDPDDLSDMADQDSVT 690
            S+   GSTF F                    +   +V  +++N+   + LS M     V 
Sbjct: 808  SEPGHGSTFHFEVSLGVQRDVQLRRMATADELFGSRVLVVDDNASAREILSGMTRSFGVE 867

Query: 691  DDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQK 750
             DV     Q  P  L  L  +   ++   L+           V              RQ 
Sbjct: 868  VDVA----QSGPAALTLLLEAEAKAQPYDLVLMDWRMPGMDGVETV-----------RQM 912

Query: 751  ETAPLEDACSVAEVAETLSEPESSFSHSPEPENETEVSR-GKQCHVETTSWFQNPATEST 809
            + A L    SV  V        ++F      E   E SR G Q  V  T     P T ST
Sbjct: 913  QAAKLAQTPSVIMV--------TAFGRE---EAREEASRQGIQLPVVLT----KPVTPST 957

Query: 810  SHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNK 869
                  R + +  +T+            +R+  S S+ ++           ++LLVEDN+
Sbjct: 958  LLEALGRVLGKIPQTDT--------RASERLDHSASTMAS-------LRGARLLLVEDNE 1002

Query: 870  INVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLKATRLIRSF 928
            +N  +A  +++  G  + +  NG EA+  ++   + D +LMD  MPVMDG  ATR IR  
Sbjct: 1003 LNRELACELLESAGIELCLAVNGAEALDQLERDADLDGVLMDCQMPVMDGYTATRKIRE- 1061

Query: 929  EDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
                                    + +  +P+IAMTA+A++   E   A GM+  +SKP+
Sbjct: 1062 -----------------------QSRWANLPVIAMTADAMAGDRERALACGMNDHISKPL 1098

Query: 989  TFQKLKECLEQYF 1001
              + +   L ++ 
Sbjct: 1099 NVEDMFATLAKWI 1111



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 162/342 (47%), Gaps = 51/342 (14%)

Query: 191 ALMEKLNESVTNL-----------EKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQD 239
           A+ME+ NE+V  L            +Q+  +EE +Q LK  +  L  VL ++PV M  +D
Sbjct: 426 AIMER-NEAVKTLLAETRRQANEVAEQALKLEEQAQALKANEAQLRAVLDSSPVAMVIRD 484

Query: 240 KELRYRFIYNHFPSLHEEDI--LGKTDVEIFSGAGVKESQDFKREVLEKGLPAKRE---I 294
            + R  +    F SL    +  L  TD   F             +  E+ L A  +   +
Sbjct: 485 VDGRPTYCNPQFDSLFGTRLAELEDTDPAQFW---------VDPQAHERFLEAASQGPVL 535

Query: 295 TFETEL--FGSKTFLIYVEPVFSKSGET-IGVNYMGMDVTDQVRKREKMAKLREEIAVQK 351
            FE  L   G + F + V  V    GE  +  N+   D+T+                 +K
Sbjct: 536 NFEARLQRAGGERFDVLVSTVTMTLGERGVWANWY-FDITE-----------------RK 577

Query: 352 AKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGV 410
             E E+ +     EE  RAK   LATMSHEIR+P+  ++ M+ +   T+LD  QR  +  
Sbjct: 578 TAEAEVQRAREAAEEATRAKSNFLATMSHEIRTPMNAIIGMSHLALRTELDHRQRNYIEK 637

Query: 411 MISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGD 469
           +  S + +L +INDILD S++E+G M LE   F    V+           + K L L  +
Sbjct: 638 VHRSAEYLLAIINDILDFSRIEAGKMHLEHIPFHLENVLDGFANMIGLKAEDKGLELLFN 697

Query: 470 IADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV--GIKL 509
           IA ++P  +IGD LR+ QIL NL +NA KFT +G++  G++L
Sbjct: 698 IAAELPTALIGDPLRLGQILVNLGNNATKFTEQGEIVLGVEL 739


>gi|374301885|ref|YP_005053524.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554821|gb|EGJ51865.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 939

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 159/325 (48%), Gaps = 53/325 (16%)

Query: 208 SPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRY-----RFIYNHFPSLHEEDILGK 262
           S + +  + L+R++  L   ++NAPV +   D ++RY     R++ N   +L  + + G+
Sbjct: 419 SDIRQAEEALRRSEGQLRLFVENAPVAIAMFDTQMRYIEASQRWLNNF--NLVRQGLRGR 476

Query: 263 TDVEIF-------------SGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIY 309
           +  E F             S AG  E  D  R   E+   + +   +ET           
Sbjct: 477 SHYETFPELPEHWKQVHRRSLAGAVEGADADR--FERADGSVQWTRWETR---------- 524

Query: 310 VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEI-AVQKAKETELNKTIHITEETM 368
             P ++  G   G+     DVT+ V+ RE + + ++E  A  KAK               
Sbjct: 525 --PWYTAPGVIGGIIIFSEDVTEAVQIREALRQAKQEADAANKAK--------------- 567

Query: 369 RAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
              + LA MSHEIR+P+ G++ M E+          R  L +   S   +L +INDILDL
Sbjct: 568 --SEFLANMSHEIRTPMNGIMGMIELALLKDPSCPARGNLELAQKSAHHLLDIINDILDL 625

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
           SK+E+G ++L++     R +V+ V+ T + A+ +K + +   I  DVP  ++GD +R+RQ
Sbjct: 626 SKIEAGKLELKSRPLVLRRIVEDVVGTLSLAASRKGVSMHHYIESDVPERLMGDEMRLRQ 685

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVV 512
           +L NL+ NA+KFT EG++ + +  V
Sbjct: 686 VLMNLVGNAVKFTHEGRILVNVETV 710



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 62/163 (38%), Positives = 87/163 (53%), Gaps = 22/163 (13%)

Query: 837 PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV 896
           P    Q  + + AEV   K     +ILL EDN IN +VA+ +++  GHS+ VV NG  A+
Sbjct: 795 PVSTDQPRAEAGAEVA-VKAARSLRILLAEDNPINQLVAQELLESRGHSVTVVENGRAAL 853

Query: 897 HAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956
            A+  + +DL+LMDV MP M G +ATR IR         A   AG++             
Sbjct: 854 DALSLKPFDLVLMDVRMPEMGGEEATRRIR---------AGDIAGVDSG----------- 893

Query: 957 RIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
            IPIIA+TA AL    E   A GM  +++KP+T ++L   LE+
Sbjct: 894 -IPIIALTAYALEGDRERFLAAGMTDYLAKPITLEELDRVLER 935



 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 47/72 (65%)

Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
           + +R  V DTGIGIPE  L  +F  + Q + +   KYGGTGLGL I K LVELMGG ++V
Sbjct: 718 ICLRFTVSDTGIGIPEERLGDIFESFSQANIETQTKYGGTGLGLTISKLLVELMGGEVSV 777

Query: 650 TSKVHCGSTFTF 661
            S    GS+FTF
Sbjct: 778 RSTPGHGSSFTF 789


>gi|94264431|ref|ZP_01288220.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455121|gb|EAT05343.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 17/178 (9%)

Query: 335 RKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEI 394
           R+ E+ A   EE+A ++A+   + K+           + LA MSHEIR+P+ GV+ MA +
Sbjct: 143 RRLEEAAVQAEELA-RQAQAANIAKS-----------EFLANMSHEIRTPMNGVIGMASL 190

Query: 395 LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV-- 452
           L +  L  EQ   + V+I+SG+ +L+LIN ILD SK+E+G ++L+   F PRE+V+ V  
Sbjct: 191 LLSEDLTAEQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVL 250

Query: 453 -LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
            LQ  AA+  + L L  +I+  +P    GD +R+RQ+L NL+ NAIKFT  G V I+L
Sbjct: 251 LLQPQAAA--QNLALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEVGGVAIEL 306



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 51/70 (72%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGIP   +  LF+++ Q+     RKYGGTGLGLAIC++LVELMGG + V S+V  
Sbjct: 324 VKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVESEVGK 383

Query: 656 GSTFTFILPY 665
           GSTF F +P+
Sbjct: 384 GSTFWFTVPF 393


>gi|117925404|ref|YP_866021.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
 gi|117609160|gb|ABK44615.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
          Length = 674

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 106/176 (60%), Gaps = 4/176 (2%)

Query: 333 QVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSM 391
           Q  +R   + +  +I+ +K  ET+L     I+E   RAK   LATMSHEIR+PL  ++ M
Sbjct: 259 QGAERHFFSAVVRDISQRKQLETQLRHAQQISESANRAKSTFLATMSHEIRTPLNTILGM 318

Query: 392 AEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451
            ++L  T L   Q   + ++ +SG  +L LINDILDLSK+E G + LE   F   ++++ 
Sbjct: 319 GQLLEETDLTEMQHWCVNILGNSGRALLTLINDILDLSKIEEGHLSLEHTPFDLHQLLQE 378

Query: 452 V--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           V  L T +A L K + L G  ++ +P  V+GD  R+RQ+L NL+ NAIKFT +G V
Sbjct: 379 VEELFTFSA-LAKGITLRGHFSESLPQWVMGDPTRLRQVLLNLLGNAIKFTKQGFV 433



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 20/155 (12%)

Query: 844 PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
           PS  +  V  + P+    IL+ +D+  N ++ ++ +K+  + + + +NG+EA+   + Q 
Sbjct: 529 PSLPATTVVHSSPQRALTILVADDSDDNRILIEAFLKKSPYKLVMASNGLEALEEFKKQP 588

Query: 904 YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963
           +DL+L D+ MP+MDG +A R IR +E +            Q M +        R PIIA+
Sbjct: 589 FDLVLTDIQMPIMDGYEAIRQIRQWESS------------QKMTT--------RTPIIAL 628

Query: 964 TANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
           TA+ + E AE+    G D  +SKP+  ++L E ++
Sbjct: 629 TAHVMKEEAEQIEQAGGDLHLSKPIQKKRLLEVIQ 663



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 47/80 (58%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   V+D+G GI +     +F  + Q  +   RKYGG+GLGL I ++LV+LM G++ + S
Sbjct: 445 ICFSVFDSGPGIAKERQQEIFLPFTQADSSTTRKYGGSGLGLTISRRLVKLMHGQIQLES 504

Query: 652 KVHCGSTFTFILPYQVSPIE 671
           ++  GS F F L    +P E
Sbjct: 505 RLGKGSRFYFSLNLPQAPTE 524



 Score = 46.2 bits (108), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 26/129 (20%)

Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDV-VNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           IL+V+D   N    K+++  L H + +  N+G +A+     Q  DLIL+D+ MP MDG +
Sbjct: 8   ILVVDDTTANRYTMKAILGGLEHVVILEANSGEQALALTIEQQVDLILLDIQMPGMDGFE 67

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES-AEECFANG 979
              L++    T                        + IPII +TA   SE   ++ +  G
Sbjct: 68  TAHLLKMSAST------------------------RDIPIIFITAIYRSEHFYKQGYQVG 103

Query: 980 MDSFVSKPV 988
              +++KPV
Sbjct: 104 AVDYLTKPV 112


>gi|258625183|ref|ZP_05720099.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
           mimicus VM603]
 gi|258582558|gb|EEW07391.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
           mimicus VM603]
          Length = 1053

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEET 367
            Y    +++ G  + ++ +G+ +  ++  + + A    ++  +KA E ELN+     EE 
Sbjct: 237 FYEAETYTRDGTLVPID-LGVSIF-ELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEEA 294

Query: 368 MRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
           +  K M LA MSHEIR+P+  ++ M+ +   T+L  +QR  +  + SS  L+L +INDIL
Sbjct: 295 VEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHSSATLLLGIINDIL 354

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHV-LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           D SK+E+G + +E  +F   EV+ +V + T   +  K L L   +  ++P ++IGD LRI
Sbjct: 355 DFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGDPLRI 414

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
            Q++ NL++NA+KFT +G++ + + V    P
Sbjct: 415 GQVVINLVNNAVKFTEQGEISVSVQVGERQP 445



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 35/136 (25%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV----HAVQCQN-YDLILMDVCMPV 915
           ++LL EDN+IN  +A  +M+     + + NNG EA+    H+++ Q  +D+I MD+ MPV
Sbjct: 692 RVLLTEDNEINQQIALELMEAKELVVTIANNGKEALDHLAHSLETQQRFDIIFMDLQMPV 751

Query: 916 MDGLKATRLIRS---FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
           MDG +A R IRS    +DT                           P+IAMTA+A+ E  
Sbjct: 752 MDGYEAARHIRSTPEHDDT---------------------------PLIAMTAHAMVEER 784

Query: 973 EECFANGMDSFVSKPV 988
           E C + GM+  VSKP+
Sbjct: 785 ERCLSLGMNDHVSKPI 800



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 45/67 (67%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIG+ E     LF+ + Q      RKYGGTGLGL+I ++LVELM G ++VTSK  
Sbjct: 453 NVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSKPD 512

Query: 655 CGSTFTF 661
            GS FTF
Sbjct: 513 AGSCFTF 519


>gi|410030950|ref|ZP_11280780.1| signal transduction histidine kinase [Marinilabilia sp. AK2]
          Length = 1054

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 110/177 (62%), Gaps = 14/177 (7%)

Query: 330 VTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVV 389
           +++ + ++     LR  I++++A+E  + K+           + LA MSHEIR+PL GV+
Sbjct: 530 ISNAIERKNMEQNLR--ISMEQAREASIAKS-----------EFLANMSHEIRTPLNGVI 576

Query: 390 SMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449
             +++L  T+LD+ QR+ L  +I SG+L+L++I D+LD SK+E+G ++L       +++ 
Sbjct: 577 GFSDLLMKTELDKNQREFLQSIIHSGNLLLEIITDVLDFSKIEAGKLELSPTPTDLKKLA 636

Query: 450 KHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
              L   A SL+ K + L   ++DD+P  V+ D  R++Q+L NL+SNA KFT +GK+
Sbjct: 637 NETLNMIAPSLEGKDIRLNLTLSDDIPPLVLADNTRLKQVLMNLLSNAAKFTHKGKI 693



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 29/171 (16%)

Query: 832  EMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVV-- 889
            E++ + D+I  +P +    +P    +   KILLV+DN +N+++AK+++K L     ++  
Sbjct: 792  ELKSRTDKII-APKTG---IPSNHLEKPLKILLVDDNPVNMLLAKTIVKNLLPKAKILEA 847

Query: 890  NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSS 949
             NG EAV     ++  +I MD+ MP M G +AT  IR  E                    
Sbjct: 848  KNGREAVDLFVQEDPSMIFMDIQMPEMSGYEATIEIRKIE-------------------- 887

Query: 950  GSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
               N+ +R+PI+A+TA  +    + C   GMD+++SKPV    ++E +++Y
Sbjct: 888  ---NNTRRVPIVALTAGTVKGEYDRCLQVGMDNYLSKPVVVADIQEMMDKY 935



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 576 VSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635
           +S G S D+     V+    V+DTGIGI +     +F  + Q      RKYGGTGLGL I
Sbjct: 698 ISQGLSADQKNAHLVF---AVFDTGIGISKEKEKIIFEAFAQEDNSTTRKYGGTGLGLTI 754

Query: 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668
             ++++LM   L + +++  GSTF+F+L   ++
Sbjct: 755 SNKILQLMNSELRLETELGKGSTFSFLLTLPIA 787


>gi|322696596|gb|EFY88386.1| putative histidine kinase HHK2p [Metarhizium acridum CQMa 102]
          Length = 2074

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 2/152 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + ++ +IN
Sbjct: 1406 KEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQDTTLNEEQRDYTNTIQTSANSLIMIIN 1465

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSKV++G+MKL+   F  R +++ V +  +  ++ K L L   +  DVP  V GD 
Sbjct: 1466 DILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYLVEADVPAWVKGDK 1525

Query: 483  LRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
            +RIRQ+L N+I NAIKFT EG+V  +  V  E
Sbjct: 1526 VRIRQVLLNVIGNAIKFTAEGEVFSRCRVYTE 1557



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 20/119 (16%)

Query: 579  GNSMDEDLEATVWIRCDVY--------------------DTGIGIPENALPTLFRKYMQV 618
            GN++    E  V+ RC VY                    DTG G  +     +F+ + Q+
Sbjct: 1537 GNAIKFTAEGEVFSRCRVYTEEDPVVCNENEIMLQFAITDTGRGFTKEEAELIFKPFSQI 1596

Query: 619  SADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
                 R++GG+GLGL I +QLVEL GG++  T+    GSTFTF   + +   E++ + P
Sbjct: 1597 DGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAIPGKGSTFTFTARFTLPSPEDHPNIP 1655



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 36/144 (25%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMPVMD 917
            ++LLVEDN +N  V    +K++G  ++V  +GVE    V  +    Y LIL         
Sbjct: 1964 RVLLVEDNPVNQKVLNKYLKKIGVEVEVAVDGVECTEIVLSKPHSYYSLIL--------- 2014

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
               A R +R       W+ A+                  ++PIIA++AN +S+  E+C A
Sbjct: 2015 ---ACREVR------EWEKASS---------------LPKLPIIALSANVMSDVQEKCVA 2050

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             G   +V+KPV F  L   + ++F
Sbjct: 2051 AGFSDYVTKPVDFIDLSRAMAKFF 2074


>gi|428771931|ref|YP_007163719.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
           7202]
 gi|428686210|gb|AFZ46070.1| multi-sensor hybrid histidine kinase [Cyanobacterium stanieri PCC
           7202]
          Length = 894

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 98/146 (67%), Gaps = 2/146 (1%)

Query: 365 EETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           E   RAK   LATMSHEIR+P+ G++ MA++L +T L++EQ+  +  +  SG L+L +IN
Sbjct: 505 ESANRAKSAFLATMSHEIRTPMNGIMGMADLLCHTPLNKEQKDYVKTINQSGSLLLTIIN 564

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKILMLEGDIADDVPIEVIGDV 482
           DILDL+K+E+G ++LE   F   + ++ VL+   A ++ K + L       +P + IGD+
Sbjct: 565 DILDLAKIEAGKIELEKKPFNLHQCIEEVLKLMRANAINKNIKLIYIKNHLIPADFIGDI 624

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIK 508
            R++QI+ NL+SN IKFT +G+V +K
Sbjct: 625 NRLKQIILNLVSNGIKFTEKGEVQVK 650



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 80/143 (55%), Gaps = 26/143 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHS---IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            KILLVEDN +N  VA+ M ++LG++   +++ ++G++A+  +    YD++ MD+ MP +D
Sbjct: 769  KILLVEDNPVNYKVARLMFQKLGYTGEKLNIAHDGLQALELINQNQYDIVFMDLQMPNLD 828

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            GL  T  IR+                            K+  I+AMTA+AL+E  + CF 
Sbjct: 829  GLNTTIKIRAL-----------------------GKKIKQPWIVAMTASALAEDRKNCFN 865

Query: 978  NGMDSFVSKPVTFQKLKECLEQY 1000
             GM+ +VSKP+    +++ L+++
Sbjct: 866  VGMNDYVSKPIRSGTIQQALQRF 888



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 51/84 (60%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I+  + DTGIGIP +    LF+ + QV   + RKYGGTGLGL I +++  LMGG++T  +
Sbjct: 663 IQIAIKDTGIGIPTDKCDRLFKPFSQVDGTNTRKYGGTGLGLVISQKIAHLMGGKITFKT 722

Query: 652 KVHCGSTFTFILPYQVSPIEENSD 675
           ++  GSTF   +       EE S+
Sbjct: 723 EIAQGSTFYITIKLLALSSEEISE 746


>gi|383764386|ref|YP_005443368.1| putative two-component hybrid sensor and regulator [Caldilinea
           aerophila DSM 14535 = NBRC 104270]
 gi|381384654|dbj|BAM01471.1| putative two-component hybrid sensor and regulator [Caldilinea
           aerophila DSM 14535 = NBRC 104270]
          Length = 797

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 90/139 (64%), Gaps = 1/139 (0%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ G++ M  ++ +T L  EQR  +   I S D +L L+NDILD SK+
Sbjct: 393 EFLANMSHEIRTPMNGIIGMLHLMQSTPLTEEQRDYVTTAIQSADALLHLLNDILDFSKI 452

Query: 432 ESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
           E+G + L    F    +++ +++  +  +  K + L   IA+D+P  ++GD LR+RQILT
Sbjct: 453 EAGKLDLIPQPFDLHSLIETLIKAHSTIANAKSIHLRATIAEDIPRHLVGDELRLRQILT 512

Query: 491 NLISNAIKFTPEGKVGIKL 509
           NL+SNAIKFT +G V + +
Sbjct: 513 NLLSNAIKFTDQGTVSLSI 531



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 100/206 (48%), Gaps = 27/206 (13%)

Query: 800  WFQN-PATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKP 858
            W Q+ P   ST +  A   +   ++   P      +  P++  +SPS S  +   T P  
Sbjct: 599  WVQSQPGEGSTFYFTAVFGL--AAQATHPIATTLPKTGPEQPGRSPSDSPHQGTGTHPAV 656

Query: 859  KP--KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916
            +P  ++LL EDN +N  VA   +++    + VV NG EA+ A+    YDL+LMDV MP+M
Sbjct: 657  RPGLRLLLAEDNVVNQKVAVRFLQKYNFEVTVVGNGAEALEALSNDRYDLVLMDVQMPIM 716

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DGL+A + +R  E T                   +  H   IP+IAMTA+A+    E C 
Sbjct: 717  DGLEAVQHLRKREAT-------------------TGGH---IPVIAMTAHAMQGDRERCL 754

Query: 977  ANGMDSFVSKPVTFQKLKECLEQYFP 1002
            A GMD +VSKP    +L   +    P
Sbjct: 755  AAGMDGYVSKPFKAHELLAEITALLP 780



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 1/91 (1%)

Query: 571 DPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTG 630
           D GT VS   +M +     + ++  V DTGIGI    L ++F  ++Q      R++GGTG
Sbjct: 523 DQGT-VSLSITMSQQQAEQIELQFCVADTGIGISPEKLTSIFDAFVQADTSSTRRFGGTG 581

Query: 631 LGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           LGL I  +LV +MGGR+ V S+   GSTF F
Sbjct: 582 LGLTISARLVAMMGGRIWVQSQPGEGSTFYF 612


>gi|322704067|gb|EFY95666.1| putative histidine kinase HHK2p [Metarhizium anisopliae ARSEF 23]
          Length = 2075

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 2/152 (1%)

Query: 365  EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
            +E M +K + L+ MSHEIR+PL G+  M   L +T L+ EQR     + +S + ++ +IN
Sbjct: 1407 KEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQDTTLNEEQRDYTNTIQTSANSLIMIIN 1466

Query: 424  DILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDV 482
            DILDLSKV++G+MKL+   F  R +++ V +  +  ++ K L L   +  DVP  V GD 
Sbjct: 1467 DILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYLVEADVPAWVKGDK 1526

Query: 483  LRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
            +RIRQ+L N+I NAIKFT EG+V  +  V  E
Sbjct: 1527 VRIRQVLLNVIGNAIKFTAEGEVFSRCRVYTE 1558



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 20/119 (16%)

Query: 579  GNSMDEDLEATVWIRCDVY--------------------DTGIGIPENALPTLFRKYMQV 618
            GN++    E  V+ RC VY                    DTG G  +     +F+ + Q+
Sbjct: 1538 GNAIKFTAEGEVFSRCRVYTEEDPAVCNENEIMLQFAITDTGRGFTKEEAELIFKPFSQI 1597

Query: 619  SADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDP 677
                 R++GG+GLGL I +QLVEL GG++  T+    GSTFTF   + +   E++ + P
Sbjct: 1598 DGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAIPGKGSTFTFTARFTLPSPEDHPNIP 1656



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 36/144 (25%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILMDVCMPVMD 917
            ++LLVEDN +N  V    +K++G  ++V  +GVE    V  +    Y LIL         
Sbjct: 1965 RVLLVEDNPVNQKVLNKYLKKIGVEVEVAVDGVECTEIVLSKPHSYYSLIL--------- 2015

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
               A R IR +E   +                       ++PIIA++AN +S+  E+C A
Sbjct: 2016 ---ACREIREWEKLSS---------------------LPKLPIIALSANVMSDVQEKCVA 2051

Query: 978  NGMDSFVSKPVTFQKLKECLEQYF 1001
             G   +V+KPV F  L   + ++F
Sbjct: 2052 AGFSDYVTKPVDFIDLSRAMAKFF 2075


>gi|262173308|ref|ZP_06040985.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
 gi|261890666|gb|EEY36653.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
          Length = 1053

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEET 367
            Y    +++ G  + ++ +G+ +  ++  + + A    ++  +KA E ELN+     EE 
Sbjct: 237 FYEAETYTRDGTLVPID-LGVSIF-ELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEEA 294

Query: 368 MRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
           +  K M LA MSHEIR+P+  ++ M+ +   T+L  +QR  +  + SS  L+L +INDIL
Sbjct: 295 VEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHSSATLLLGIINDIL 354

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHV-LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           D SK+E+G + +E  +F   EV+ +V + T   +  K L L   +  ++P ++IGD LRI
Sbjct: 355 DFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGDPLRI 414

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
            Q++ NL++NA+KFT +G++ + + V    P
Sbjct: 415 GQVVINLVNNAVKFTEQGEISVSVQVGERQP 445



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 35/136 (25%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV----HAVQCQN-YDLILMDVCMPV 915
           ++LL EDN+IN  +A  +M+     + + NNG EA+    H+++ Q  +D+I MD+ MPV
Sbjct: 692 RVLLTEDNEINQQIALELMEAKELVVTIANNGKEALDHLAHSLETQQRFDIIFMDLQMPV 751

Query: 916 MDGLKATRLIRS---FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
           MDG +A R IRS    +DT                           P+IAMTA+A+ E  
Sbjct: 752 MDGYEAARHIRSTPEHDDT---------------------------PLIAMTAHAMVEER 784

Query: 973 EECFANGMDSFVSKPV 988
           E C + GM+  VSKP+
Sbjct: 785 ERCLSLGMNDHVSKPI 800



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 45/67 (67%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIG+ E     LF+ + Q      RKYGGTGLGL+I ++LVELM G ++VTSK  
Sbjct: 453 NVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSKPD 512

Query: 655 CGSTFTF 661
            GS FTF
Sbjct: 513 AGSCFTF 519


>gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 785

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 126/232 (54%), Gaps = 23/232 (9%)

Query: 283 VLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETI-GVNYMGMDVTDQVRKREKMA 341
           ++ +G   K E TF     G    +I+   V   +G++  G+  + +D+T++ +  E   
Sbjct: 337 LIPRGFINKVE-TFYRARDGRLIPVIFSASVMHGAGKSAQGIVCVALDITERKQAEE--- 392

Query: 342 KLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKL 400
                 A++ AKE          E   RAK Q LA MSHEIR+P+ GV+ M ++L +++L
Sbjct: 393 ------ALRIAKEN--------AEAANRAKSQFLANMSHEIRTPMNGVLGMLDLLMDSRL 438

Query: 401 DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL 460
           D  Q +L  +   S D +L++INDILD SK+E+G  +L  A F  RE V+ V        
Sbjct: 439 DENQLRLASMAHGSADKLLEIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKA 498

Query: 461 Q-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV--GIKL 509
           Q K + L   I D VP  V GD +R+RQ+L NL+ NA+KFT  G++  G+ L
Sbjct: 499 QDKNIRLICQIDDSVPNTVRGDGVRLRQVLINLVGNAVKFTENGQIFLGVSL 550



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/159 (37%), Positives = 87/159 (54%), Gaps = 21/159 (13%)

Query: 844  PSSSSAEVPETKPKPK--PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
            P+  + E    +P  +  P +LL EDN +N  + + +++ LG  +DVV NG +AV AV  
Sbjct: 644  PADDAMEENSERPATQRTPLVLLAEDNPVNQELGRLVLESLGCKVDVVGNGRQAVEAVSD 703

Query: 902  QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII 961
            + YDL+ MD  MP +DG +ATR IR  E        AE G EQ           + IP+I
Sbjct: 704  REYDLVFMDCQMPEVDGYEATRSIRQRE--------AETG-EQT----------RHIPVI 744

Query: 962  AMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            A+TA+A+    E C + GMD + SKP T  +L+  L ++
Sbjct: 745  ALTAHAMDGDRETCLSAGMDDYASKPFTPIQLQALLNRW 783



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 59/110 (53%), Gaps = 11/110 (10%)

Query: 579 GNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQ 638
           G S+ E       +R +V DTG GIP +A P +F  + Q     AR++ GTGLGLAI ++
Sbjct: 547 GVSLMETTAENTQLRFEVRDTGTGIPLDAQPYIFDAFSQADNSMARRHEGTGLGLAISRE 606

Query: 639 LVELMGGRLTVTSKVHCGSTFTFILPYQVS-----------PIEENSDDP 677
           LVE MGG + V S+   GS F F L  + +            +EENS+ P
Sbjct: 607 LVEAMGGTIGVRSEPGTGSLFWFTLCLRHAQSIPALLPADDAMEENSERP 656


>gi|258622445|ref|ZP_05717467.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|424808569|ref|ZP_18233966.1| hypothetical protein SX4_2564 [Vibrio mimicus SX-4]
 gi|258585145|gb|EEW09872.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|342324134|gb|EGU19916.1| hypothetical protein SX4_2564 [Vibrio mimicus SX-4]
          Length = 1053

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 123/211 (58%), Gaps = 4/211 (1%)

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEET 367
            Y    +++ G  + ++ +G+ +  ++  + + A    ++  +KA E ELN+     EE 
Sbjct: 237 FYEAETYTRDGTLVPID-LGVSIF-ELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEEA 294

Query: 368 MRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
           +  K M LA MSHEIR+P+  ++ M+ +   T+L  +QR  +  + SS  L+L +INDIL
Sbjct: 295 VEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQRDYVSKIHSSATLLLGIINDIL 354

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHV-LQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           D SK+E+G + +E  +F   EV+ +V + T   +  K L L   +  ++P ++IGD LRI
Sbjct: 355 DFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGDPLRI 414

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516
            Q++ NL++NA+KFT +G++ + + V    P
Sbjct: 415 GQVVINLVNNAVKFTEQGEISVSVQVGERQP 445



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 35/136 (25%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAV----HAVQCQN-YDLILMDVCMPV 915
           ++LL EDN+IN  +A  +M+     + + NNG EA+    H+++ Q  +D+I MD+ MPV
Sbjct: 692 RVLLTEDNEINQQIALELMEAKELVVTIANNGKEALDHLAHSLETQQRFDIIFMDLQMPV 751

Query: 916 MDGLKATRLIRS---FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
           MDG +A R IRS    +DT                           P+IAMTA+A+ E  
Sbjct: 752 MDGYEAARHIRSTPEHDDT---------------------------PLIAMTAHAMVEER 784

Query: 973 EECFANGMDSFVSKPV 988
           E C + GM+  VSKP+
Sbjct: 785 ERCLSLGMNDHVSKPI 800



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 45/67 (67%)

Query: 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
           +V DTGIG+ E     LF+ + Q      RKYGGTGLGL+I ++LVELM G ++VTSK  
Sbjct: 453 NVSDTGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSKPD 512

Query: 655 CGSTFTF 661
            GS FTF
Sbjct: 513 AGSCFTF 519


>gi|163801498|ref|ZP_02195397.1| putative two-component sensor [Vibrio sp. AND4]
 gi|159174987|gb|EDP59787.1| putative two-component sensor [Vibrio sp. AND4]
          Length = 641

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/139 (44%), Positives = 96/139 (69%), Gaps = 3/139 (2%)

Query: 369 RAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
           +  + LATMSHEIR+P+ G+V +A +L++TKLD++Q+ L+ V+ SS   ++ +I+DILD 
Sbjct: 243 KKSEFLATMSHEIRTPMNGIVGIASLLNDTKLDKQQKDLVNVINSSSHSLMVIIDDILDF 302

Query: 429 SKVESGVMKLEAAKFRPREVVKHV--LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIR 486
           SK+E+G ++LE   +   +++  V  L T  A  QK L L  DI   +P+EV GDV R++
Sbjct: 303 SKIEAGKIELEVTHYNLFDLLSEVGRLHTVKAQ-QKSLQLVCDIDPQLPLEVEGDVGRLK 361

Query: 487 QILTNLISNAIKFTPEGKV 505
           Q+L NL++NA+KFT  G V
Sbjct: 362 QVLNNLLTNAVKFTERGYV 380



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 30/183 (16%)

Query: 819  IQTSKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSM 878
            I + KT  PQK   + + P+  + S +++S     TK + KP IL+VED  +N  V + M
Sbjct: 471  IVSDKTISPQK-PNVFDFPN--ASSNATTSCHSTLTKDEGKPWILVVEDTAVNQKVVRMM 527

Query: 879  MKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938
            ++++G  ++V  +G  A+   Q   +DLILMD  MPVMDG  AT  IR     G W    
Sbjct: 528  LEKIGMRVNVAEHGESALRQCQTDQFDLILMDCQMPVMDGFIATENIRKM---GEWG--- 581

Query: 939  EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998
                             +++PIIA++AN + E  + CF  GM+ FV+KPVT    K CL+
Sbjct: 582  -----------------RKVPIIALSANVIKEDQQRCFEVGMNEFVAKPVT----KACLQ 620

Query: 999  QYF 1001
            + F
Sbjct: 621  KIF 623



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGI +     +F K+ Q      RKYGGTGLGLAIC +L+E+MGG++ +TS++  
Sbjct: 400 VVDSGIGIAKENQQAVFEKFQQADGSTMRKYGGTGLGLAICSRLIEVMGGKILLTSELGL 459

Query: 656 GSTFTFILPYQV 667
           GS F F +P  +
Sbjct: 460 GSCFEFTIPLNI 471


>gi|443477298|ref|ZP_21067155.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
 gi|443017594|gb|ELS32000.1| PAS/PAC sensor hybrid histidine kinase [Pseudanabaena biceps PCC
           7429]
          Length = 834

 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 110/187 (58%), Gaps = 19/187 (10%)

Query: 325 YMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRS 383
           Y+G D+T+  RK +++   R+                   E++ RAK + LA MSHEIR+
Sbjct: 265 YVGRDITELKRKEQELLAARQ-----------------FAEQSNRAKSIFLANMSHEIRT 307

Query: 384 PLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443
           P+ GV+ M ++L +T LD  Q+  +  +  SG+L+L LIN ILDLSK+E G ++LE+  F
Sbjct: 308 PMNGVLGMTDLLLSTTLDDRQQDFVENIRLSGNLLLSLINRILDLSKLEEGELQLESLPF 367

Query: 444 RPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE 502
              + ++ +L+     +  + L +     +D+P  ++ D +R RQI+ NLI NAIKFT E
Sbjct: 368 NLEQCIEEILELFGLQAHNQSLEINASFEEDLPRLLMADTVRFRQIMMNLIGNAIKFTSE 427

Query: 503 GKVGIKL 509
           G++ +++
Sbjct: 428 GEIVVRI 434



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 75/140 (53%), Gaps = 20/140 (14%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL EDN  N  V  + + QLG   D+  NG + +  +Q ++YD+ILMD  MPV+DG  
Sbjct: 713  RILLAEDNITNQKVTLAYLSQLGIQSDLAENGEQVLQLIQTKSYDIILMDCQMPVLDGYD 772

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
             T  IR  E            I Q  P        K I IIAMTANA +E  + C A GM
Sbjct: 773  TTEAIRRLE-----------AINQT-P--------KPILIIAMTANAFTEDRDRCLAIGM 812

Query: 981  DSFVSKPVTFQKLKECLEQY 1000
            D ++SKP+  Q+LKE L  +
Sbjct: 813  DDYLSKPIRKQQLKEALAYW 832



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 7/150 (4%)

Query: 581 SMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640
           S+++   + +++R  V DTGIGI  +    LF+ + QV     R++GGTGLGLAI +QLV
Sbjct: 445 SLEQASPSQIYLRFSVIDTGIGIHPSNQDKLFKPFSQVDTSTNRRFGGTGLGLAISRQLV 504

Query: 641 ELMGGRLTVTSKVHC--GSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFF 698
           ELM G + ++S V    G+ F F+LP+ +   +E+S    D   ++D+  +  D      
Sbjct: 505 ELMQGEIGISSPVDNDRGTCFWFVLPFTLQTNQESSSLVYDRQSLSDRHILVVDAN---- 560

Query: 699 QFQPRTLGSLFSSNGTS-RSKKLLPNSIGF 727
           Q+  +T+    +  G +      LP +I +
Sbjct: 561 QYARKTIRYYLTKFGANIHEASSLPEAIAY 590


>gi|115523391|ref|YP_780302.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115517338|gb|ABJ05322.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 878

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 25/207 (12%)

Query: 304 KTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHI 363
           + + +  +PV    G   G   +G DVT++ R  +  A+ R +                 
Sbjct: 329 RLWSMTAKPVLDPDGRFAGYRGVGRDVTERWRADQAEAENRAK----------------- 371

Query: 364 TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
                   + LA MSHEIR+P+ GV+ +A +L  TKLD EQ   +  +  SGD + +++N
Sbjct: 372 -------SEFLAMMSHEIRTPMNGVLGLANVLLETKLDPEQHHAVATIRDSGDNLQRILN 424

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDV 482
           DILDLSK+E+G  + E   F P  ++  V       +  K L +E D+A D+P  + GD 
Sbjct: 425 DILDLSKLEAGRFQFEMVDFSPHTLIGAVSAVIGPMAKNKGLSVEIDVAKDLPETLTGDA 484

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKL 509
            RIRQ+L NL +NA+KFT  G++ I +
Sbjct: 485 ARIRQVLLNLAANAVKFTERGRIAISV 511



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 23/128 (17%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
           ++L+ ED+K N +V   M+++    + +  +G++AV A+    YD++LMDV MP MDGL 
Sbjct: 628 RVLIAEDDKTNQLVVSKMLQEFSPELRIAQDGLQAVEALDEAKYDIVLMDVRMPNMDGLA 687

Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
           ATR IR                       G    + ++PIIA+TANA +E  + C   GM
Sbjct: 688 ATRAIR-----------------------GRGGDYAKLPIIALTANAFAEDVDLCREAGM 724

Query: 981 DSFVSKPV 988
             F++KP+
Sbjct: 725 SDFLAKPL 732



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 50/80 (62%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
           +V +   V DTGIGI ++ + +LF  + Q      R++GGTGLGLAI +++VE MGG + 
Sbjct: 520 SVSVEWRVVDTGIGIADDRVGSLFSDFAQADVTINRRFGGTGLGLAISRRIVEQMGGEIG 579

Query: 649 VTSKVHCGSTFTFILPYQVS 668
           V+S    GSTF F L   +S
Sbjct: 580 VSSVHGDGSTFYFRLRLPIS 599


>gi|281205977|gb|EFA80166.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1441

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 139/256 (54%), Gaps = 22/256 (8%)

Query: 313  VFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ 372
            +F ++G  +G+  +  D+T+  + +  + ++  +++    K  EL   +   +  ++A Q
Sbjct: 843  IFDQNGMPLGIMVVIRDITESKQIQHSLEEVNHQLS---CKNKEL---VEARDRALKAIQ 896

Query: 373  M----LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
            M    LAT+SHEIR+P+ GV+ MAE+L  +KL+ EQ ++   +  SG+L+L + +DILD 
Sbjct: 897  MKSKFLATISHEIRTPMNGVIGMAEMLLTSKLNPEQYEIADTIYKSGELLLSITSDILDF 956

Query: 429  SKVESGVMKLEAAKFRPREVVKHVLQTAAASLQK----ILMLEGDIADDVPIEVIGDVLR 484
            SK+E+  ++LE  +F     ++ V  T + SL K    IL+ E     DVP ++IGD  R
Sbjct: 957  SKIEASKLELEMIEFDFIGCIEGVFNTLSISLDKKIEIILLFE----KDVPTKLIGDPNR 1012

Query: 485  IRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPK 544
            +RQI+ N+  NAIKFT +G V   + VV      + G  Q   + Q     ++ EK    
Sbjct: 1013 LRQIILNIGHNAIKFTDKGHVFGHISVVSR----ERGTVQICVSIQDTGIGIEPEKRDML 1068

Query: 545  SQTASDQNGFHDKKHG 560
             +  S  +    +K+G
Sbjct: 1069 FEPFSQLDSSTTRKYG 1084



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 21/138 (15%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            KILLVEDN +N  V    +K+LG+  DV  +G E  +  +   YDLI MD+ MP  DG +
Sbjct: 1311 KILLVEDNAVNRKVISMQLKKLGYDCDVAEDGNEGYNKYKEGQYDLIFMDLTMPNCDGAQ 1370

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ++ +IRSFE   N                       ++ IIA++A  L  S + C + GM
Sbjct: 1371 SSLMIRSFEQITNK---------------------PKVIIIALSATVLDGSKDFCKSMGM 1409

Query: 981  DSFVSKPVTFQKLKECLE 998
            D F+ KP+  ++LK+ L+
Sbjct: 1410 DDFIVKPLKMKRLKQVLD 1427



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 588  ATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRL 647
             TV I   + DTGIGI       LF  + Q+ +   RKYGG+GLGLAIC  L +LM G +
Sbjct: 1045 GTVQICVSIQDTGIGIEPEKRDMLFEPFSQLDSSTTRKYGGSGLGLAICSPLAKLMDGDV 1104

Query: 648  TVT-SKVHCGSTFT 660
            ++  S+   GS F+
Sbjct: 1105 SLDWSQPGKGSIFS 1118


>gi|94265927|ref|ZP_01289653.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453513|gb|EAT03921.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 92/140 (65%), Gaps = 3/140 (2%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           + LA MSHEIR+P+ GV+ MA +L    L  EQR    +++SSG  +L+LIN ILD SK+
Sbjct: 168 EFLANMSHEIRTPMNGVIGMASLLLAEDLSDEQRSYAQIIMSSGQALLELINQILDFSKI 227

Query: 432 ESGVMKLEAAKFRPREVVKH--VLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQIL 489
           E+G ++L+   F PRE+V+   VL    A+ Q I  L  +++ D+P  V GD +R+RQ+L
Sbjct: 228 EAGRLELDHRPFSPRELVEEVAVLLRPQAAAQNI-ALTSEVSPDIPAIVEGDPVRLRQVL 286

Query: 490 TNLISNAIKFTPEGKVGIKL 509
            NL+ NAIKFT  G V ++L
Sbjct: 287 LNLVGNAIKFTEVGGVAMEL 306



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 51/75 (68%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V D+GIGIP   L  LF+++ QV     RKYGGTGLGLAIC++LVELMGG + V S+   
Sbjct: 324 VKDSGIGIPVEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLVELMGGEIGVESEEGK 383

Query: 656 GSTFTFILPYQVSPI 670
           GSTF F +P +   I
Sbjct: 384 GSTFWFTVPLRTHEI 398


>gi|372489497|ref|YP_005029062.1| PAS domain S-box [Dechlorosoma suillum PS]
 gi|359356050|gb|AEV27221.1| PAS domain S-box [Dechlorosoma suillum PS]
          Length = 1047

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 105/169 (62%), Gaps = 2/169 (1%)

Query: 343 LREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLD 401
           L  +I  +K  E EL +     E   RAK + LA MSHEIR+P+ G++ M ++  ++ L 
Sbjct: 508 LFRDITERKHAELELQQAKEAAESANRAKGEFLANMSHEIRTPMNGILGMTDLALDSALT 567

Query: 402 REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ-TAAASL 460
            EQR  L ++ SS D +L +INDILD SK+E+G ++LE   F  R++++  L+     + 
Sbjct: 568 PEQRDYLEMVKSSADALLVIINDILDFSKIEAGKLELEHIHFHLRQLLRETLKPLELRAR 627

Query: 461 QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           Q+ L L  ++ ++V    +GD  R+RQ+L NL+ NAIKFT EG+V +++
Sbjct: 628 QRSLTLRCEVPEEVADGYLGDPGRLRQVLINLVGNAIKFTEEGQVAVRV 676



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 20/145 (13%)

Query: 858  PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            P  ++L+ EDN +N  +  +++++ GH + + +NG +A+ A+   ++DL+LMD+ MPVM 
Sbjct: 778  PPLRLLVAEDNPVNQKLVLTLLQKRGHRVTLADNGQQALAALATDHFDLVLMDMQMPVMG 837

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            GL+AT                   I  A  + G   H   +PI+AMTANA++   E C  
Sbjct: 838  GLEAT-----------------RRIRAAEAARGDGQH---LPIVAMTANAMAGDRELCLE 877

Query: 978  NGMDSFVSKPVTFQKLKECLEQYFP 1002
             GMD +VSKP+   +    +    P
Sbjct: 878  AGMDGYVSKPLRRDEFFSAMADVLP 902



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 579 GNSMDEDLEATVWIRCD---------VYDTGIGIPENALPTLFRKYMQVSADHARKYGGT 629
           GN++    E  V +R +         V DTGIGIP +    +F  + Q  +   R++GGT
Sbjct: 661 GNAIKFTEEGQVAVRVEARDGLLHFAVSDTGIGIPADKQQLIFEAFSQADSSVTRRFGGT 720

Query: 630 GLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           GLGL IC +LV LMGG + V S    GSTF F
Sbjct: 721 GLGLTICTRLVRLMGGHMWVESDPGQGSTFHF 752


>gi|304320167|ref|YP_003853810.1| Signal transduction histidine kinase [Parvularcula bermudensis
           HTCC2503]
 gi|303299070|gb|ADM08669.1| Signal transduction histidine kinase [Parvularcula bermudensis
           HTCC2503]
          Length = 651

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 22/208 (10%)

Query: 307 LIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEE 366
           LI   P     GET+   Y+G DVT   R R+  A +RE     +A          ++EE
Sbjct: 75  LIEWNPSRFTDGETL---YLGTDVT---RDRKNYAVMRELARTARA----------VSEE 118

Query: 367 TMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
            MR    LATMSHE+R+PL G++ M  +L ++ LD  QR     +  +G  +L LIND+L
Sbjct: 119 KMR---YLATMSHEMRTPLNGILGMNGLLLDSPLDVNQRAYAEAVQQAGTALLTLINDVL 175

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRI 485
           D SK+++G + LE   F P  ++K V +  A    +K + +   +  D+P E++GD  R+
Sbjct: 176 DYSKIQAGHLDLEEKPFSPGALLKEVAEILAIRADEKGIDIALLLHPDIPEELVGDPARL 235

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVP 513
           RQ+L NL +N +KFT EG  G+ L ++P
Sbjct: 236 RQVLVNLATNGVKFTTEG--GVSLEILP 261



 Score =  103 bits (256), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 83/143 (58%), Gaps = 25/143 (17%)

Query: 859  KP-KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMD 917
            KP  ILL EDN IN ++A++++++ GH +D+V NG EAV AV    YDLILMD+ MPVMD
Sbjct: 517  KPLNILLAEDNSINAVLAETILRRDGHQVDLVRNGKEAVEAVDLSVYDLILMDMRMPVMD 576

Query: 918  GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
            G++AT  IR                   MP+       + +PIIA+TANA +   + C  
Sbjct: 577  GIEATVRIRQ------------------MPTG------EVLPIIALTANATTADRQACLE 612

Query: 978  NGMDSFVSKPVTFQKLKECLEQY 1000
             GM+ F+SKP   + L + + ++
Sbjct: 613  AGMNDFLSKPFEPKSLSDIVNRW 635



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 572 PGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGL 631
           PGT      S D+DL         V DTG GI  + L  LF ++ Q S   A +  GTGL
Sbjct: 261 PGT-----GSTDDDLIDHRRYSFRVRDTGKGIAADNLDRLFEEFDQGSDPSAEE--GTGL 313

Query: 632 GLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
           GL I +QLV  MGG + VTS +  GSTF F
Sbjct: 314 GLTIARQLVNAMGGNIDVTSALGKGSTFEF 343


>gi|404398184|ref|ZP_10989768.1| PAS [Pseudomonas fuscovaginae UPB0736]
          Length = 1337

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 118/209 (56%), Gaps = 19/209 (9%)

Query: 308 IYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEET 367
           + + P+ +  GE  G   +  D+T+++R                    EL     + E  
Sbjct: 578 MVITPIRTADGELTGHLGIAQDITERLRH-----------------SAELQAAKAVAEAA 620

Query: 368 MRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDIL 426
             AK + LA MSHEIR+P+  V+ +A +L N+ L+ +QRQLL  +  +G  +L +INDIL
Sbjct: 621 NAAKSLFLANMSHEIRTPMNAVIGIAHLLQNSPLNEQQRQLLTKLQIAGRSLLGIINDIL 680

Query: 427 DLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKILMLEGDIADDVPIEVIGDVLRI 485
           D++K+E+G M+LE + F PR+++  + +  +A + QK L      A  +P  ++GD LR+
Sbjct: 681 DIAKIEAGEMRLENSPFSPRQLLDELAELFSAQAEQKGLSFAVKGAGALPGLLMGDALRV 740

Query: 486 RQILTNLISNAIKFTPEGKVGIKLYVVPE 514
            QIL NL+ NA+KFT EG+V + +   P+
Sbjct: 741 NQILMNLVGNALKFTTEGRVEVIVSYEPD 769



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 48/80 (60%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTG GI  +AL  LF  + Q  A   R++GGTGLGL++ + L E MGG + V S
Sbjct: 776 LRFCVQDTGCGIMADALSQLFTPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGHVEVRS 835

Query: 652 KVHCGSTFTFILPYQVSPIE 671
           ++  GS F   LP+QV   E
Sbjct: 836 ELGGGSEFQVSLPFQVCSSE 855



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 29/161 (18%)

Query: 830  ICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVV 889
            I   Q   +R+ QS   +  +   T      ++LLV+D++IN+ VA  +++Q G  +   
Sbjct: 978  IARYQGSTERVLQS---TRLDTTMTHWLSGLQLLLVDDSEINLEVATLLLEQQGAQVQTC 1034

Query: 890  NNGVEAVHAVQ--CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMP 947
             NG++A+  ++     +D +LMDV MP MDG +ATR +R+           E G+     
Sbjct: 1035 INGLQALERLRQFPDFFDAVLMDVQMPEMDGYEATRRLRN-----------ELGL----- 1078

Query: 948  SSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
                    K +P++A+TA AL+E   +    GMD F++KP+
Sbjct: 1079 --------KSMPVLALTAGALAEERRQAEMAGMDDFLTKPL 1111


>gi|379722572|ref|YP_005314703.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus mucilaginosus
           3016]
 gi|386725338|ref|YP_006191664.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus mucilaginosus
           K02]
 gi|378571244|gb|AFC31554.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus mucilaginosus
           3016]
 gi|384092463|gb|AFH63899.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus mucilaginosus
           K02]
          Length = 639

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 145/318 (45%), Gaps = 77/318 (24%)

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           E+T +AK + LA MSHEIR+P+ GV+ M ++L  T+LD EQR+ + ++ +SG  +L +IN
Sbjct: 260 EKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLLFETRLDMEQREYVQIIKNSGHTLLSIIN 319

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVL 483
           DILD SK+ESG                                          E+I +  
Sbjct: 320 DILDFSKLESG----------------------------------------RSELIEEPC 339

Query: 484 RIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEG--LKQKSKAYQSATDAVKEEKH 541
            IR IL+  IS  +    +  + IK  V P+ P    G  +K K       ++A+K   +
Sbjct: 340 NIRAILSETISLILPKALQKNLEIKTSVSPDIPHLVLGDQMKLKQVLMNLLSNAIK---Y 396

Query: 542 QPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGI 601
            P                              + V H N  ++D    V ++ +V DTG+
Sbjct: 397 TPNGAV--------------------------SIVVHCNKREKD---KVRLQFEVRDTGL 427

Query: 602 GIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKV-HCGSTFT 660
           G+P+  +  LF  + QV     R   GTGLGLAIC++LV+LM G +   + +   GSTF 
Sbjct: 428 GVPKEKVAHLFEPFYQVDHFMTRNAEGTGLGLAICRKLVQLMDGSIWYEAGLDQHGSTFL 487

Query: 661 FILPYQVSPIEENSDDPD 678
           F   ++  P E  +DD D
Sbjct: 488 FTAEFRTHP-EALADDAD 504



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 85/143 (59%), Gaps = 23/143 (16%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            + +IL+ EDN IN +V K ++++LG+S+ VV+NG EAV A +   YDLI MDV MP+M+G
Sbjct: 514  RIRILIAEDNDINTLVLKRVIEKLGYSVTVVSNGAEAVDAAKRHAYDLIFMDVQMPLMNG 573

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            L+AT+ I+                  AM + GS  +     I+A+TA+A+    E+  A 
Sbjct: 574  LEATKAIK------------------AMSAEGSCPY-----IVAVTAHAIKGDREKYLAA 610

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GMD ++SKP++   +   +EQ+ 
Sbjct: 611  GMDEYISKPISMDAVSGIIEQFL 633


>gi|357418328|ref|YP_004931348.1| two component system sensor-response regulator hybrid protein
           [Pseudoxanthomonas spadix BD-a59]
 gi|355335906|gb|AER57307.1| two component system sensor-response regulator hybrid protein
           [Pseudoxanthomonas spadix BD-a59]
          Length = 1171

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 98/153 (64%), Gaps = 4/153 (2%)

Query: 363 ITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQL 421
           + E+  +AK   LAT+ HE+R+P+TGV+ M+E+L  T LD  QR+    + ++G  +L+L
Sbjct: 796 LAEQASQAKTHFLATLGHEVRTPMTGVLGMSELLLATPLDERQRRYTRAIQNAGSHLLRL 855

Query: 422 INDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIG 480
           +ND LDL+++E+G ++++A  F  RE++  V    A S  Q+ L     +AD VP  + G
Sbjct: 856 VNDALDLARIEAGRLEMDAQDFDLRELLDGVAALIAPSAQQRGLAFSCHVADGVPPALRG 915

Query: 481 DVLRIRQILTNLISNAIKFTPEGKVGIKLYVVP 513
           D LRIRQI+ NL+ NA+KFT  G V  +L  +P
Sbjct: 916 DPLRIRQIVLNLLGNAVKFTERGAV--RLQALP 946



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 32/154 (20%)

Query: 846  SSSAEVPETKPKPKP------KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAV 899
            + +  VP     P P       +LLVED+     V   +++  GH++  V++G+ A+ A+
Sbjct: 1028 AGNGAVPALPSAPAPGEGSPLSVLLVEDDATIAEVVTGLLQARGHAVQAVSHGLAALTAL 1087

Query: 900  QCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
              +++D+ L+D+ +P +DGL   R +R+   T                          +P
Sbjct: 1088 ALEHFDIALLDLDLPGIDGLALARQLRAQGLT--------------------------LP 1121

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKL 993
            ++A+TA A  ++     A G D F+ KPVT Q L
Sbjct: 1122 MLAVTARADGDAEALAQAAGFDGFLRKPVTGQML 1155



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 9/113 (7%)

Query: 596  VYDTGIGIPENALPTLFRKYMQV-SADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654
            V DTG G+       LF+++ Q   A  A +YGG+GLGLAIC++L   MGG ++V S   
Sbjct: 956  VSDTGPGMNAEQQARLFQRFEQAEGARTASRYGGSGLGLAICQELAVAMGGTISVESTPG 1015

Query: 655  CGSTFTFILPYQVS----PIEENSDDPDDLSDMA----DQDSVTDDVTAGFFQ 699
             G+ F   LP        P   ++  P + S ++    + D+   +V  G  Q
Sbjct: 1016 QGTRFLVSLPLPAGNGAVPALPSAPAPGEGSPLSVLLVEDDATIAEVVTGLLQ 1068


>gi|334133825|ref|ZP_08507366.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF7]
 gi|333608582|gb|EGL19873.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF7]
          Length = 580

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 114/191 (59%), Gaps = 11/191 (5%)

Query: 333 QVRKREKMAKLR------EEIAVQK---AKETELNKTIHITEETMRAKQM-LATMSHEIR 382
           Q R+RE+ A  +      E I +Q+       EL ++    E    AK M LATMSHEIR
Sbjct: 30  QARQREEQALTQFSSLNNELITLQRQLSKTNVELVQSKAEAERANEAKSMFLATMSHEIR 89

Query: 383 SPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAK 442
           +P+ G++ MAE+L++T    EQ+Q + ++  S  L+L +INDILDLSK+E+G M+ E   
Sbjct: 90  TPMNGILGMAELLADTLQTEEQKQSIAIIEESASLLLTIINDILDLSKIEAGHMQPEPET 149

Query: 443 FRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTP 501
           F  R+++ H L+    +  +K   L G + + V   + GD  RIRQIL NL  NAIKFT 
Sbjct: 150 FEVRKLLNHALRLLEPNASRKRNKLRGSVDESVGQFLTGDAGRIRQILINLAGNAIKFTD 209

Query: 502 EGKVGIKLYVV 512
           +G+V I++ ++
Sbjct: 210 DGEVHIRIRLL 220



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 22/142 (15%)

Query: 862  ILLVEDNKINVMVAKSMMKQLGH-SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +LLVEDN IN  VA   +++LG   ID  +NG EA+ A   ++Y L+LMD  MPVMDGL+
Sbjct: 338  LLLVEDNAINRQVALLQLQKLGFMHIDTASNGEEALEARSRKDYSLVLMDSQMPVMDGLQ 397

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            AT+LIR +E+                     +    R  I+A+TA+A+      C   GM
Sbjct: 398  ATQLIREWEN---------------------ARRHPRSAIVALTASAMQSDRLRCLEAGM 436

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            D F++KP+   KL+  + ++ P
Sbjct: 437  DDFLTKPIQLSKLQSVIRRWLP 458



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R +V DTG+GIPE  +  +F  + Q           TGLGL+ICK+LVE M GR+ VTS
Sbjct: 229 LRFEVTDTGVGIPEEHVNRVFEPFYQAHTQREDAQKSTGLGLSICKRLVEWMEGRIDVTS 288

Query: 652 KVHCGSTFTFILPYQV 667
           KV  GS+F F L   +
Sbjct: 289 KVGIGSSFWFELQLAI 304


>gi|262195164|ref|YP_003266373.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078511|gb|ACY14480.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 650

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 106/177 (59%), Gaps = 14/177 (7%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I+  K  E EL       E   R K + LAT+SHE+R+PL G++   ++L+++ LD +Q
Sbjct: 232 DISELKQAEAELRAAKEQAEAAARVKSEFLATISHEMRTPLHGIIGFGDLLAHSHLDPQQ 291

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESG-------VMKLEAAKFRPREVVKHVLQTAA 457
           R  L  +  S  L+ +LI+D+LDL+++E+G        M LEA   R R+V+    Q A 
Sbjct: 292 RGFLDSLRESARLLFRLISDVLDLAQIEAGRMHFEDRAMDLEALIARVRDVI--AFQAA- 348

Query: 458 ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPE 514
              +K L+LE  +  ++P  + GD LRI Q+L NL+ NA+KFTP G+V +++  VPE
Sbjct: 349 ---EKRLVLEAQLDPELPRHLRGDALRIEQVLVNLLGNALKFTPAGRVSLRVRCVPE 402



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 24/162 (14%)

Query: 838 DRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
           +R   + +S ++E  E + + +  +L+V+DN +N  +A++++++ GH + V  NG +AV 
Sbjct: 510 EREGGAGASGTSEA-EAEAESRLHVLVVDDNALNQTLARTLLQRRGHRVTVAENGQQAVA 568

Query: 898 AVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR 957
            V   ++D +LMDV MP MDGL ATR IR                  AM  S S     +
Sbjct: 569 LVARGSFDAVLMDVHMPTMDGLAATRAIR------------------AMGLSAS-----Q 605

Query: 958 IPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
           +PI+ +TA+ ++++ EE  A+GM+  + KP    +L   L +
Sbjct: 606 LPIVGLTASVVNDNREEYLASGMNDCIGKPFRVAELFAVLSR 647



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 44/70 (62%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R +V DTG+GI  + L  LF  + Q+    +R  GG+GLGLAICK+LVE MGG + V S
Sbjct: 425 LRFEVRDTGVGISSDRLNILFEPFTQLDTSASRAIGGSGLGLAICKRLVEGMGGVIGVAS 484

Query: 652 KVHCGSTFTF 661
               GS F F
Sbjct: 485 TPGKGSCFWF 494


>gi|255936779|ref|XP_002559416.1| Pc13g09940 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584036|emb|CAP92063.1| Pc13g09940 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1879

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/164 (37%), Positives = 105/164 (64%), Gaps = 2/164 (1%)

Query: 346  EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
            +I  +K  E ELNK +      M +K +  + MSHEIR+PL G++     + +T+LD +Q
Sbjct: 1156 DINDRKNLERELNKAMQQLNHQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQLDSDQ 1215

Query: 405  RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKI 463
            R++L  + +S   + +L+++ILD+S+VE+G M +  + F  R +++ V+ T A+ ++ K 
Sbjct: 1216 RRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSMVKSWFHIRSMIEDVIDTIASRAIDKG 1275

Query: 464  LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
            L +   I +D+P  VIGD  RIRQ+L NL+ NA+KFT +G++ I
Sbjct: 1276 LEINYLIGEDLPSMVIGDRFRIRQVLINLLGNAVKFTAQGEIHI 1319



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 19/102 (18%)

Query: 579  GNSMDEDLEATVWIRCDVY-------------------DTGIGIPENALPTLFRKYMQVS 619
            GN++    +  + I CD+Y                   DTG G        L +++ Q+ 
Sbjct: 1306 GNAVKFTAQGEIHICCDMYRDPSANPDDTQAFMNFEVVDTGKGFSSQDAERLMQRFSQLG 1365

Query: 620  ADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661
             +  +++ G+GLGL + KQLVE+ GG+LT +SK   G+ F+F
Sbjct: 1366 ENGTQQHAGSGLGLFLSKQLVEMHGGKLTPSSKEGQGAKFSF 1407



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 42/158 (26%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN---YDLILM-------- 909
            +ILLVED++ N  V    + ++    +  +NG+E  + V  +    Y LI++        
Sbjct: 1714 RILLVEDDETNRDVMLKYLDKIKLMSETASNGLECTNMVLSKEPGYYSLIIVSLLCTLSP 1773

Query: 910  ----------DVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIP 959
                      D+ MP+ +G    + IR +E                       NH+ +IP
Sbjct: 1774 RKTNRVHLQCDIQMPIKNGYDTCKDIRDWEQ---------------------KNHYPQIP 1812

Query: 960  IIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997
            I+A++ANA+++  E     G + +V+KP+   +L + +
Sbjct: 1813 IMALSANAMTDQIENAARAGFNDYVTKPIKHNELGKMM 1850


>gi|46107708|ref|XP_380913.1| hypothetical protein FG00737.1 [Gibberella zeae PH-1]
          Length = 1370

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 97/148 (65%), Gaps = 9/148 (6%)

Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKV 431
           Q LA MSHEIR+P+TGV+ MAE+L   +LD+EQ++ +  + SS   +L +INDILD SKV
Sbjct: 799 QFLANMSHEIRTPITGVLGMAELLMGMELDQEQQEYVENIQSSATSLLTVINDILDFSKV 858

Query: 432 ESGVMKLEAAKFRPREVVKHV---LQTAAASLQKILMLEGDIADDVP--IEVIGDVLRIR 486
           ESG + +E  +F    +VK V   LQ A    +K L  + D+ D +   + VIGD  R+R
Sbjct: 859 ESGRLDIEEVQFSLSHIVKEVGRMLQFAVE--RKNLDFQSDVGDGIENDLVVIGDPGRVR 916

Query: 487 QILTNLISNAIKFTPEGKVGIKLYVVPE 514
           QILTNL++N+IKFT +G V  +  VV E
Sbjct: 917 QILTNLLTNSIKFTNQGYV--RFSVVAE 942



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 53/77 (68%)

Query: 589  TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            T+ ++  V D+GIGI ++    LF+ + Q  A  AR++GGTGLGL ICK L++LM GR+T
Sbjct: 948  TIEVKFSVEDSGIGIQDDVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIT 1007

Query: 649  VTSKVHCGSTFTFILPY 665
            + SKV  G+  TF +P+
Sbjct: 1008 LESKVGVGTRATFWVPF 1024



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 28/172 (16%)

Query: 837  PDRISQSPSSSSAEVPETKPKPKPKI--LLVEDNKINVMVAKSMMKQLGHSIDVVNNGVE 894
            P R     +S+S+   E  P  + KI  L+VEDN IN  +A   + +LG  +    NG E
Sbjct: 1078 PRRARFGITSTSSPDQELLPSERAKIHVLVVEDNPINQKIATKTIGRLGFQVTAAWNGKE 1137

Query: 895  AVHAVQC------QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948
            A+  +        Q  D+ILMDV MP++DG K T L+R                   MP 
Sbjct: 1138 ALEYLAGVQKGVNQKPDIILMDVQMPIIDGYKCTHLLR-----------------HHMPY 1180

Query: 949  SGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                   + +PI+AMTA+A+    E+C   GMD +++KPV    L++ L ++
Sbjct: 1181 K---PLVQDVPIVAMTASAIQGDREKCTKAGMDDYLAKPVRGVILEKMLLRW 1229


>gi|350634803|gb|EHA23165.1| hypothetical protein ASPNIDRAFT_37188 [Aspergillus niger ATCC 1015]
          Length = 2364

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 3/182 (1%)

Query: 336  KREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEI 394
            ++  +A+ RE     K  E E    + + E+  +AK + LA +SH++R+P+ GV+ ++E+
Sbjct: 1881 QKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSEL 1940

Query: 395  LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
            L  TKLDREQ + +  +    D +L LINDILD SK+E+G MK+       RE +  V++
Sbjct: 1941 LKGTKLDREQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEVVR 2000

Query: 455  TAAASLQKILMLEGDIADDVPIE--VIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
                + +   +   +  D VP E  V+GD +R+ QI  NL+SN+ KFTP+G V ++  V 
Sbjct: 2001 ALRYTHRDRGLETIEDLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAKVS 2060

Query: 513  PE 514
             E
Sbjct: 2061 RE 2062



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 32/163 (19%)

Query: 849  AEVPETK-----PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
            A VP  +     P+ + ++ + EDN IN  +A   +K L    +  ++G +AV A++ ++
Sbjct: 2166 APVPTARDLTMVPRDQIRVCIAEDNPINQKIAVKFVKGLNLQCEAYSDGRQAVEALRTRS 2225

Query: 904  -----YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
                 + ++LMDV MP +DG  ATR IR   D                       +   +
Sbjct: 2226 REGNPFHVVLMDVQMPTLDGYNATREIRKDPDP----------------------NVNEV 2263

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             +IAMTA+A+    E+C   GM++++ KPV    L E L+QY 
Sbjct: 2264 LVIAMTASAIEGDREKCLGAGMNNYLPKPVRSTILSEMLDQYL 2306



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE-LMGGRLT 648
            V + C V DTGIGI E     LFR + Q     AR YGG+GLGL+ICK ++E ++GG + 
Sbjct: 2067 VRLECSVSDTGIGISEEQKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGAIW 2126

Query: 649  VTSKVHCGSTFTFILPY 665
            + S    G+T TF L +
Sbjct: 2127 LDSTSGVGTTVTFHLAF 2143


>gi|88858180|ref|ZP_01132822.1| sensor protein barA [Pseudoalteromonas tunicata D2]
 gi|88819797|gb|EAR29610.1| sensor protein barA [Pseudoalteromonas tunicata D2]
          Length = 925

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/180 (41%), Positives = 105/180 (58%), Gaps = 4/180 (2%)

Query: 332 DQVRKR--EKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGV 388
           D+++K   + ++  RE +   + +  +LN      ++  R K   LA MSHE+R+PL GV
Sbjct: 248 DEMQKHIDQAISDYRETLEQYETQNIQLNIAKKEAQDANRVKSDFLAKMSHELRTPLNGV 307

Query: 389 VSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448
           V     L  T L++ Q+  L  +  S + +L +INDILD SK+E+G M+LE+  F+ R+ 
Sbjct: 308 VGFTRQLYKTPLNKHQKDYLDTIELSANSLLAIINDILDFSKLEAGAMELESIHFQLRDT 367

Query: 449 VKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           V  VL   A S   K L L  +I D+VP  +IGD  R +QIL NLISNAIKFT  G V I
Sbjct: 368 VNEVLTLLAPSAHDKNLELSINIHDNVPDSLIGDPTRFKQILINLISNAIKFTESGHVLI 427



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 29/182 (15%)

Query: 822  SKTNEPQKICEMQEKPDRISQSPSSSSAEVPETKPKPKP-KILLVEDNKINVMVAKSMMK 880
            SK    +K+CE    P R+       S + PE   +  P K+L+V+DN  N+ +  +++ 
Sbjct: 634  SKPLNHRKLCESLAAPYRLDHP----SIQTPEQAQRILPIKVLVVDDNDANLKLMCTLLA 689

Query: 881  QLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940
            +    ID  +NG +A+   +   YDLI +D+ MP+MDG+ A +LI               
Sbjct: 690  EQIEFIDTAHNGSQALSLAKTHKYDLIFLDIQMPIMDGVTACKLI--------------- 734

Query: 941  GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
             IE ++  S         PIIA+TA+AL+   E     G  ++++KP+  + L++ + +Y
Sbjct: 735  -IESSINEST--------PIIAVTAHALAGEKENLLKVGFKNYLTKPLDEEVLRQTIFEY 785

Query: 1001 FP 1002
             P
Sbjct: 786  SP 787



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 42/70 (60%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           I   + D+GIGI  N    LF  + Q  +   RK+GGTGLGL I K LVE MGG +++ S
Sbjct: 441 IFVAINDSGIGISANKQDALFSAFGQADSSITRKFGGTGLGLIITKHLVEAMGGHISLNS 500

Query: 652 KVHCGSTFTF 661
            V  GS FTF
Sbjct: 501 AVGKGSCFTF 510


>gi|440799539|gb|ELR20583.1| sensor histidine kinase [Acanthamoeba castellanii str. Neff]
          Length = 737

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 107/167 (64%), Gaps = 11/167 (6%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEIL-----SNTK 399
           E+A ++A E +L++     E   RAK M LA +SHE+R+PLT +V  AE++         
Sbjct: 280 EVAHRRAVEAQLHQAKEAAEAANRAKSMFLAIISHELRTPLTAIVGYAELMLAPAEKGET 339

Query: 400 LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK---HVLQTA 456
              E+++ L V++ +G  +++L+ND+LDLSK+E+G++++E   F+P ++V    HVL+  
Sbjct: 340 SAGERQETLEVILRNGRELVRLLNDVLDLSKMEAGLLQVERVPFKPADLVADVMHVLRLQ 399

Query: 457 AASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
           AA  +K L +  ++  DVP  V GD  R+RQIL N++ NA+KFTP G
Sbjct: 400 AA--EKRLRVRVEVGRDVPARVSGDPTRLRQILLNIVGNALKFTPAG 444



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 25/160 (15%)

Query: 844  PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVN--NGVEAVHAVQC 901
            P+ S++   E+  +    +L+V+DN +N  + + ++++LG+ +DV    +G++A++ +  
Sbjct: 584  PAGSASLSFESIDRASISVLVVDDNAVNRRLVQRVLERLGY-VDVATAADGLQALNHMAE 642

Query: 902  QNYDLILMDVCMPVMDGLKATRLIRS-FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960
            ++ DL+LMD+ MP+MDG  A + IR  +ED                         ++  I
Sbjct: 643  RHSDLVLMDLQMPMMDGHSACQAIRKIYED---------------------QQRAQQPVI 681

Query: 961  IAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
            IA+TA ALS+  + C A+GMD FVSKP  F+ L   L  +
Sbjct: 682  IALTAQALSDERDRCVASGMDDFVSKPFDFKVLTHKLAHW 721



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 11/93 (11%)

Query: 591 WIRCDVYDTGIGI-PENALPTLFRKYMQ-VSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            + C V DTG G+ PE+A   LF+ + Q   +  +R+YGGTGLGL + +QL  L+GG L 
Sbjct: 478 LLECTVRDTGCGMTPEHA-QHLFQPFSQGPDSSMSRQYGGTGLGLFLSRQLARLLGGDLV 536

Query: 649 V--TSKVHCGSTFTFILPYQVSPIEENSDDPDD 679
           +  T+  H G+TF   +     P+      PDD
Sbjct: 537 LAHTAPGH-GATFVATVQADADPVL-----PDD 563


>gi|344343742|ref|ZP_08774609.1| Hpt sensor hybrid histidine kinase [Marichromatium purpuratum 984]
 gi|343804726|gb|EGV22625.1| Hpt sensor hybrid histidine kinase [Marichromatium purpuratum 984]
          Length = 1120

 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 105/172 (61%), Gaps = 2/172 (1%)

Query: 339 KMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSN 397
           +MA L+ E  +Q A +  + +     E+   AK Q LA MSHEIR+PL  V+ +A +L +
Sbjct: 355 RMAALQREARLQLALKDSMERARDAAEQANAAKSQFLANMSHEIRTPLNAVLGLAHLLGD 414

Query: 398 TKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA 457
             L+ EQR  +  + S+G  +L ++NDILDLSK+E+G + LE   F   ++ +  L   +
Sbjct: 415 DPLNTEQRDCVIRIQSAGKALLGVVNDILDLSKIEAGELVLEQIPFSVGDLCRESLGIVS 474

Query: 458 -ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIK 508
             + +K L +E  IA  VP  ++GD  R+RQIL NL++NA+KFTP G + ++
Sbjct: 475 EQAGEKGLTVELQIATTVPDILVGDATRLRQILLNLLTNAVKFTPSGSITLR 526



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 26/143 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC--QNYDLILMDVCMPVMDG 918
            +ILL++D+ +N+ VA+ ++++ G  +    NG EA+  +    + +D +L+DV MPVMDG
Sbjct: 780  RILLIDDSTLNLDVARHILERQGAEVRTCGNGQEALERLGLPDERFDAVLLDVQMPVMDG 839

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            +   R IR+                            +R+P+IA+TA ALS   +   A 
Sbjct: 840  ITTVRAIRN------------------------QLRLERLPVIALTAGALSSERQRALAA 875

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GM+ +++KP    ++   L ++ 
Sbjct: 876  GMNDYLTKPFEPDQMVRSLRRHI 898



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 46/73 (63%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +  +V DTGIGIPE     LF  ++Q      R++GG+GLGLAI +Q+VE MGGR+++ S
Sbjct: 538 LHLEVEDTGIGIPETVRERLFAPFVQADDSTTRRFGGSGLGLAIVRQIVERMGGRVSLES 597

Query: 652 KVHCGSTFTFILP 664
               GSTF    P
Sbjct: 598 TEGEGSTFRIEAP 610


>gi|317027783|ref|XP_001399984.2| sensor histidine kinase/response regulator [Aspergillus niger CBS
            513.88]
          Length = 2354

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 3/182 (1%)

Query: 336  KREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEI 394
            ++  +A+ RE     K  E E    + + E+  +AK + LA +SH++R+P+ GV+ ++E+
Sbjct: 1871 QKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSEL 1930

Query: 395  LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
            L  TKLDREQ + +  +    D +L LINDILD SK+E+G MK+       RE +  V++
Sbjct: 1931 LKGTKLDREQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEVVR 1990

Query: 455  TAAASLQKILMLEGDIADDVPIE--VIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
                + +   +   +  D VP E  V+GD +R+ QI  NL+SN+ KFTP+G V ++  V 
Sbjct: 1991 ALRYTHRDRGLETIEDLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAKVS 2050

Query: 513  PE 514
             E
Sbjct: 2051 RE 2052



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 32/163 (19%)

Query: 849  AEVPETK-----PKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN 903
            A VP  +     P+ + ++ + EDN IN  +A   +K L    +   +G +AV A++ ++
Sbjct: 2156 APVPTARDLTMVPRDQIRVCIAEDNPINQKIAVKFVKGLNLQCEAYGDGRQAVEALRTRS 2215

Query: 904  -----YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
                 + ++LMDV MP +DG  ATR IR   D                       +   +
Sbjct: 2216 REGNPFHVVLMDVQMPTLDGYNATREIRKDPDP----------------------NVNEV 2253

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             +IAMTA+A+    E+C   GM++++ KPV    L E L+QY 
Sbjct: 2254 LVIAMTASAIEGDREKCLGAGMNNYLPKPVRSTILSEMLDQYL 2296



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)

Query: 590  VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE-LMGGRLT 648
            V + C V DTGIGI E     LFR + Q     AR YGG+GLGL+ICK ++E ++GG + 
Sbjct: 2057 VRLECSVSDTGIGISEEQKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGAIW 2116

Query: 649  VTSKVHCGSTFTFILPY 665
            + S    G+T TF L +
Sbjct: 2117 LDSTSGVGTTVTFHLAF 2133


>gi|319781102|ref|YP_004140578.1| ATPase domain-containing protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166990|gb|ADV10528.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 779

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 103/164 (62%), Gaps = 3/164 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           E+A+++A   E  +++   E   RAK + LA MSHEIR+P+ GV+ MAE+L+ T L   Q
Sbjct: 210 EVAIRRAF-AESAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDLTPRQ 268

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKI 463
           +    V++ SG+ +L +INDILD SK+ +G + L+ A FR  E V+ V    +A + +K 
Sbjct: 269 KTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLSEAVEDVATLVSARVAEKN 328

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
           L L   +   +P  V+GD  R RQI+TNL+ NA+KFT +G V I
Sbjct: 329 LELIVRVDPRLPAHVVGDAGRFRQIITNLLGNAVKFTEKGHVLI 372



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 24/164 (14%)

Query: 840  ISQSPSSSSAEVPE--TKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVH 897
            + + P+   A  PE  T P     IL+ EDN +N +V   ++  LG S  +  NG  AV 
Sbjct: 629  VIRGPALPVAAAPESTTTPNGPIDILIAEDNDVNQLVFGQILNGLGLSYRIAGNGRTAVE 688

Query: 898  AVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR 957
              +     LILMDV MP M+G +ATR IR+ E                  S+G+      
Sbjct: 689  MYRALRPKLILMDVSMPEMNGYEATRAIRAMET-----------------STGT-----H 726

Query: 958  IPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            IPII +TA+AL    ++C  +GMD ++ KPV+  +L   +  + 
Sbjct: 727  IPIIGVTAHALKGDRDKCIESGMDDYLPKPVSPDRLGTKIGTWL 770



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 48/76 (63%)

Query: 589 TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            V ++  V DTGIGIP   L  +F K+ QV     R++ GTGLGLAI  +LV+LM G++ 
Sbjct: 382 VVQLKIRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIG 441

Query: 649 VTSKVHCGSTFTFILP 664
           V S++  GS F F +P
Sbjct: 442 VESEIGRGSVFWFAVP 457


>gi|291326604|ref|ZP_06125114.2| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
 gi|291313686|gb|EFE54139.1| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
          Length = 1032

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 2/166 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQ-MLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I +Q   E +L+    + EE  RAK   LATMSHEIR+PL G++   E+L+NT L  +Q
Sbjct: 439 DITIQAETEKQLDDAKRLAEEANRAKSTFLATMSHEIRTPLYGLIGTLELLANTSLSSQQ 498

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA-AASLQKI 463
              +  + ++  L++QLI DILD+SK+E+  +++    F   E+V+  +Q     + QK 
Sbjct: 499 AHFIDRISTTSQLLMQLIGDILDISKIEANQIQIHNQPFDLLELVQQTVQLYQGIAQQKG 558

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           L+L   I  +V    IGD  R++QIL NL+SNAIKFT  G V I+L
Sbjct: 559 LLLFAIIDPNVQANRIGDSARLQQILGNLLSNAIKFTHRGTVTIEL 604



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 26/142 (18%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            ++L+ EDN IN +V +  ++ LG  + + N+G EA+     +  D+IL DV MP  +G +
Sbjct: 805  RVLIAEDNPINQVVLQEQLELLGCKVFIANDGEEALVIWDNEIVDIILTDVNMPYRNGYE 864

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
              + +RS  +T                           PI+ +TAN L E  E C  +GM
Sbjct: 865  LAQQLRSEGET--------------------------CPIVGVTANGLKEEEERCLESGM 898

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            DS++ KP+  + L +   + FP
Sbjct: 899  DSWLVKPIELETLVQLFNRLFP 920



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSAD-HARKYGGTGLGLAICKQLVELMGGRLTVT 650
           I   V DTG+GI       LF  + Q  ++ HA  YGGTGLGL IC +L++LM G++++ 
Sbjct: 612 ILLRVSDTGVGISPEQQIKLFEPFYQAHSEIHA--YGGTGLGLFICSKLIKLMDGQISLQ 669

Query: 651 SKVHCGSTFTFILP 664
           S+   GS+F   LP
Sbjct: 670 SETGVGSSFLVTLP 683


>gi|33466068|gb|AAQ19473.1| histidine kinase D5 [Emericella nidulans]
          Length = 994

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 106/172 (61%), Gaps = 2/172 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I  +K  E ELNK +      M +K +  + MSHEIR+PL G++     + +T LD +Q
Sbjct: 293 DINDRKNLERELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTSLDTDQ 352

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA-SLQKI 463
           R++L  + +S   + + +++ILD+S+VE+G M L  + F  R V++ V+ T ++ ++ K 
Sbjct: 353 RRMLDTIQNSSTNLRESVDNILDVSRVEAGKMSLVGSWFHVRSVIEDVIDTVSSRAIDKG 412

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEP 515
           L +   +  DVP  VIGD  RIRQIL NL+ NA+KFT +G++ I+  +  +P
Sbjct: 413 LEMNYLMDVDVPPMVIGDRFRIRQILINLVGNAVKFTAQGEIHIRCSIYHDP 464



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 24/140 (17%)

Query: 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNG---VEAVHAVQCQNYDLILMDVCMPVMD 917
           ++LLVED++ N MV    + ++    +   +G    + V + +   Y LI+ D+ MP+ +
Sbjct: 848 RVLLVEDDETNRMVMMKYLDKIKVMAETAGDGQQCADMVFSKEPGYYSLIICDIQMPIKN 907

Query: 918 GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA 977
           G +  R IR +E                       NH+ +IPI+A++ANA+++  E+   
Sbjct: 908 GYETCREIRKWE---------------------MKNHYPQIPIMALSANAMTDQIEDAAR 946

Query: 978 NGMDSFVSKPVTFQKLKECL 997
            G + +V+KP+   +L + +
Sbjct: 947 AGFNDYVTKPIKHNELGKMM 966



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 19/104 (18%)

Query: 579 GNSMDEDLEATVWIRCDVY-------------------DTGIGIPENALPTLFRKYMQVS 619
           GN++    +  + IRC +Y                   DTG G        L +++ Q+ 
Sbjct: 443 GNAVKFTAQGEIHIRCSIYHDPNAIHKPTEILMNFDVVDTGKGFSAQDAERLMQRFSQLG 502

Query: 620 ADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663
            + +++  G+GLGL + KQLVE+ GGRLT +SK   G+ F+F +
Sbjct: 503 TNASQQNAGSGLGLFLSKQLVEMHGGRLTPSSKEGQGAKFSFFV 546


>gi|407688248|ref|YP_006803421.1| diguanylate cyclase [Alteromonas macleodii str. 'Balearic Sea
           AD45']
 gi|407291628|gb|AFT95940.1| GGDEF domain protein [Alteromonas macleodii str. 'Balearic Sea
           AD45']
          Length = 1373

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 116/188 (61%), Gaps = 3/188 (1%)

Query: 329 DVTDQVRKREKM-AKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLT 386
           ++T Q R  + +  ++ E+ A  KA+  +L K +   EE  + K + LA MSHEIR+P+ 
Sbjct: 788 EITKQKRFVQALEQQVSEKTASLKAQANDLKKALEQAEEATKLKSEFLANMSHEIRTPMN 847

Query: 387 GVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446
           GV+ M  +L  + L  EQ Q + +  SS + +L LINDILD SK+E+  +++E+ +F  R
Sbjct: 848 GVIGMLGLLKKSNLTTEQSQRVNIASSSANSLLALINDILDFSKIEADKLEIESVEFDVR 907

Query: 447 EVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
           E+++ + Q+ A   Q K L +  D++     ++  D  RI+QILTNL+SNA+KFT +G++
Sbjct: 908 ELIESIAQSVAHLAQEKGLDVVVDLSKVSESKINSDPSRIQQILTNLLSNAVKFTEQGEL 967

Query: 506 GIKLYVVP 513
            +   ++P
Sbjct: 968 SVTAELLP 975



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 82/145 (56%), Gaps = 25/145 (17%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN----YDLILMDVCMPVM 916
            +ILLVEDN IN +VA ++++  G+ +DV NNGVEA+  ++       Y  I+MD  MP M
Sbjct: 1246 RILLVEDNAINQIVATNVLESEGYVVDVANNGVEALELLKSSKLKAYYSAIVMDCQMPEM 1305

Query: 917  DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976
            DG +AT+LIR       + AA +               +KR+PIIAMTANA+    + C 
Sbjct: 1306 DGFEATKLIR-------YGAAGDV--------------YKRVPIIAMTANAMQGDKDMCM 1344

Query: 977  ANGMDSFVSKPVTFQKLKECLEQYF 1001
              GMD F++KP+   K+   L+ + 
Sbjct: 1345 KAGMDDFLTKPIEHNKVTSTLQHWL 1369



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 49/71 (69%)

Query: 589  TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLT 648
            T  +   V DTGIGIP + LP LF  + QV A   R+YGGTGLGL+I K+L +L+GG ++
Sbjct: 981  TALMHIAVADTGIGIPASKLPHLFDAFTQVDASTTRRYGGTGLGLSITKKLCQLLGGDIS 1040

Query: 649  VTSKVHCGSTF 659
            VT+++  GS F
Sbjct: 1041 VTTELGKGSRF 1051


>gi|337749678|ref|YP_004643840.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus mucilaginosus
           KNP414]
 gi|336300867|gb|AEI43970.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus mucilaginosus
           KNP414]
          Length = 639

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 99/148 (66%), Gaps = 2/148 (1%)

Query: 365 EETMRAK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLIN 423
           E+T +AK + LA MSHEIR+P+ GV+ M ++L  T+LD EQR+ + ++ +SG  +L +IN
Sbjct: 260 EKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLLFETRLDMEQREYVQIIKNSGHTLLSIIN 319

Query: 424 DILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA-ASLQKILMLEGDIADDVPIEVIGDV 482
           DILD SK+ESG  +L       R ++   +      +LQK L ++  ++ D+P  V+GD 
Sbjct: 320 DILDFSKLESGRSELIEEPCNIRAILSETISLILPKALQKNLEIKTSVSPDIPHLVLGDQ 379

Query: 483 LRIRQILTNLISNAIKFTPEGKVGIKLY 510
           ++++Q+L NL+SNAIK+TP G V I ++
Sbjct: 380 MKLKQVLMNLLSNAIKYTPNGAVSIVVH 407



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 83/143 (58%), Gaps = 23/143 (16%)

Query: 859  KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
            + +IL+ EDN IN +V K ++++LG+S  VV+NG EAV A     YDLI MDV MP+M+G
Sbjct: 514  RIRILIAEDNDINTLVLKRVIEKLGYSATVVSNGAEAVDAAIRHAYDLIFMDVQMPLMNG 573

Query: 919  LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
            L+AT+ I+                  AM + GS  +     I+A+TA+A+    E+  A 
Sbjct: 574  LEATKAIK------------------AMSAEGSCPY-----IVAVTAHAIKGDREKYLAA 610

Query: 979  GMDSFVSKPVTFQKLKECLEQYF 1001
            GMD ++SKP++   +   +EQ+ 
Sbjct: 611  GMDEYISKPISMDAVSGIIEQFL 633


>gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1823

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 120/202 (59%), Gaps = 15/202 (7%)

Query: 310  VEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMR 369
            +E V ++ G T+   ++   +  +V+++E++A+  E  A+++A++          E   R
Sbjct: 993  LEDVAAQVGITLAQAHL---LETEVKRQEQLAEQNE--ALEQARQA--------AEVANR 1039

Query: 370  AK-QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
            AK + LATMSHEIR+P+  V+ M  +L +  L  EQR  +  + +SGD +L +INDILD 
Sbjct: 1040 AKSEFLATMSHEIRTPMNAVIGMTGLLLDMDLTPEQRDFVETIRTSGDALLTIINDILDF 1099

Query: 429  SKVESGVMKLEAAKFRPREVVKHVLQ-TAAASLQKILMLEGDIADDVPIEVIGDVLRIRQ 487
            SK+ESG M LE   F  R  ++  L   A  + +K L L   I   VP +V+GDV R+RQ
Sbjct: 1100 SKIESGKMDLEQHPFELRTCIEESLDLLAPKASEKGLELAYLIDSSVPSKVLGDVTRLRQ 1159

Query: 488  ILTNLISNAIKFTPEGKVGIKL 509
            IL NL+ NA+KFT  G++ + +
Sbjct: 1160 ILVNLLGNAVKFTEAGEIVVSV 1181



 Score = 99.0 bits (245), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 23/142 (16%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
            +ILL EDN +N  VA  +++++G+  D+  NG+EA+ A++ Q YD++LMDV MP MDGL+
Sbjct: 1534 RILLAEDNLVNQKVATHLLERIGYRADIAGNGLEALEALRKQFYDVVLMDVQMPQMDGLE 1593

Query: 921  ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
            ATR I        W        EQ  P            IIAMTANA+    E+C A GM
Sbjct: 1594 ATRRI-----CQEWP-------EQLRPR-----------IIAMTANAMQGDREKCLAAGM 1630

Query: 981  DSFVSKPVTFQKLKECLEQYFP 1002
            + +++KPV  ++L   L +  P
Sbjct: 1631 NDYITKPVRREELANALSKCKP 1652



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 14/86 (16%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            I+  V DTGIGIP + +  LF+ + QV A   R+YGGTGLGLAI ++L E+MGG++ V S
Sbjct: 1210 IQIAVKDTGIGIPPDRMDRLFKAFSQVDASTTRQYGGTGLGLAISQRLSEMMGGKMWVVS 1269

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDP 677
            K               +P+  NS  P
Sbjct: 1270 K--------------AAPVAGNSHSP 1281


>gi|58580142|ref|YP_199158.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC 10331]
 gi|84622139|ref|YP_449511.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|58424736|gb|AAW73773.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC 10331]
 gi|84366079|dbj|BAE67237.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 769

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 108/177 (61%), Gaps = 5/177 (2%)

Query: 335 RKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHEIRSPLTGVVSMAE 393
           R RE+   L++E+      E EL +     E  M AK + LATMSHEIR+PL G++ M E
Sbjct: 78  RARER---LQQELQRHGELEQELLRAKQAAEAAMLAKGEFLATMSHEIRTPLNGIIPMLE 134

Query: 394 ILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL 453
           ++S+ +L  +QR +L    SS   +L++++DILD SK+E+  ++LE   F  RE++  V+
Sbjct: 135 LISSGQLSLDQRDMLQTATSSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVV 194

Query: 454 QTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKL 509
           Q    + + + L L  DI   V + V GD +R+RQ+L NLI NAIKFT  G V I+L
Sbjct: 195 QLLQRTAEGRQLRLSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQL 251



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 26/161 (16%)

Query: 847  SSAEVPETKPKPKP-----KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC 901
            +SA +PE  P P       +ILLVEDN +N++VA+ ++  LG   D   +G  A+  ++ 
Sbjct: 479  ASAMIPEPLPPPMANAREVRILLVEDNPVNLLVAQKLLAVLGFEADTATDGETALTRMES 538

Query: 902  QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII 961
              YD++ MD  MPV+DG  ATR  R+ E                   SGS    + +PI+
Sbjct: 539  IRYDMVFMDCQMPVLDGYAATRRWRAMET-----------------ESGS----RPLPIV 577

Query: 962  AMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYFP 1002
            AMTANA++   E C A GMD ++SKPV  ++L  CL+++ P
Sbjct: 578  AMTANAMACDHERCLAAGMDDYLSKPVAREQLDACLQRWLP 618



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 49/74 (66%)

Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
           +R  V DTGIGI  +    LFR + Q  A   R YGGTGLGLAICK++++LMGGR+ V S
Sbjct: 263 LRFQVRDTGIGIAPDQQTRLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVES 322

Query: 652 KVHCGSTFTFILPY 665
           +   GSTF F +P 
Sbjct: 323 EPGRGSTFWFEIPL 336


>gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1610

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 112/220 (50%), Gaps = 25/220 (11%)

Query: 291  KREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQ 350
            +RE T++ +     T L+ +  +    G   G   MG D+T +      +A+ R+E    
Sbjct: 1020 EREWTYQRKDGSRLTVLVTITALRDSDGVVTGFLAMGKDITSRKAAEHALAEARDE---- 1075

Query: 351  KAKETELNKTIHITEETMRAKQM----LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQ 406
                             +RA Q+    LATMSHEIR+P+  ++ M  +L +T L +EQ +
Sbjct: 1076 ----------------ALRAAQVKADFLATMSHEIRTPMNAIIGMTGLLLDTALTKEQHE 1119

Query: 407  LLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILM 465
                +  S D +L L+NDILD SK+E+G +  E   F  R  V+  ++  A   Q K L 
Sbjct: 1120 FADSVRRSSDGLLTLLNDILDFSKIEAGKLHFEQLPFDLRMTVEDTVELLAEQAQSKGLE 1179

Query: 466  LEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKV 505
            L G +   VP  V+GD  R+RQIL NL+ NAIKFT  G+V
Sbjct: 1180 LIGLVDAAVPTAVVGDPGRLRQILVNLVGNAIKFTAAGEV 1219



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 84/149 (56%), Gaps = 23/149 (15%)

Query: 853  ETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVC 912
            E++  PKP++LL EDN +N  VA  M+++LG+ +DV  NG EAV A +   Y LILMD  
Sbjct: 1474 ESQAGPKPRLLLAEDNPVNQKVACKMLEKLGYRVDVAGNGQEAVAAHERSRYPLILMDCQ 1533

Query: 913  MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972
            MP +DG +AT LIR  E                    G S H    PI+AMTANA+    
Sbjct: 1534 MPEVDGFEATALIRKME--------------------GRSAH---TPIVAMTANAMQGDR 1570

Query: 973  EECFANGMDSFVSKPVTFQKLKECLEQYF 1001
            E C A GMD +++KPV  ++L+  L+ + 
Sbjct: 1571 ERCLAAGMDDYIAKPVRPKELQAILDTWL 1599



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 45/70 (64%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            +R  + DTGIGIPE     LF  ++Q  +   R++GGTGLGLAIC++LV  M G++ V S
Sbjct: 1234 LRFTIKDTGIGIPEAVQGRLFHAFVQADSSTTRRFGGTGLGLAICQRLVSQMHGQIGVES 1293

Query: 652  KVHCGSTFTF 661
                GSTF F
Sbjct: 1294 HSGQGSTFWF 1303


>gi|346326011|gb|EGX95607.1| two-component sensor protein histidine protein kinase [Cordyceps
            militaris CM01]
          Length = 2489

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 107/177 (60%), Gaps = 5/177 (2%)

Query: 336  KREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEI 394
            +R  + K R+     K  E E N+ + + EE  +AK + LA +SHE+R+PL GV+  +E+
Sbjct: 1912 QRTALKKARQAETKAKDAEAEANRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSEL 1971

Query: 395  LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQ 454
            L +++L+REQ ++   +  S DL+L +INDILD SK+E+  MKL    F P E+V+ V++
Sbjct: 1972 LRDSELNREQMEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEEMVREVVR 2031

Query: 455  TAAAS-LQKILMLEGDIADDVPIE---VIGDVLRIRQILTNLISNAIKFTPEGKVGI 507
              + S  +K       I  D+ +    + GD +R+ Q+L NLI N++KFT +G + I
Sbjct: 2032 AVSYSNREKTSKKNVKIIQDINLPSMLIYGDPIRLHQVLGNLIGNSLKFTDDGSITI 2088



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 28/146 (19%)

Query: 861  KILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQC-----QNYDLILMDVCMP 914
            +I + EDN IN  +A   +K+LG+  +    NG++A+  ++      Q Y +ILMDV MP
Sbjct: 2227 RICIAEDNPINQKIAIQYVKRLGYRHVVAYENGMKAIEGLRAKAKEGQPYHIILMDVMMP 2286

Query: 915  VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE 974
            V+DG +AT+LIR                +  M +       ++I +IAMTA+A+    E+
Sbjct: 2287 VLDGYEATKLIR----------------KDPMEA------VRKILVIAMTASAIQGDREK 2324

Query: 975  CFANGMDSFVSKPVTFQKLKECLEQY 1000
            C A GM+ +++KPV    L+  L+ Y
Sbjct: 2325 CLAAGMNDYLAKPVRADVLRRKLDAY 2350



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 5/89 (5%)

Query: 589  TVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE-LMGGRL 647
            T W+R    DTGIGI    L  LF+ + Q  A  ARKYGG+GLGL+ICK L+E +M G++
Sbjct: 2103 TFWVR----DTGIGIHPQQLAKLFQPFSQADAGTARKYGGSGLGLSICKSLIEVMMKGKI 2158

Query: 648  TVTSKVHCGSTFTFILPYQVSPIEENSDD 676
             + S    G+T  F + ++ +  + ++ D
Sbjct: 2159 RLESGDTAGTTAWFTVTFEKTEADVSAGD 2187


>gi|32481651|gb|AAP84165.1| RcsC [Pseudomonas aeruginosa PA14]
          Length = 1084

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I V    ET L+      +   +AK + LA MSHEIR+PL GV+   E+L  T L+  Q
Sbjct: 468 DITVHCEAETALSNAKRAADAASQAKTLFLARMSHEIRTPLYGVLGTLELLDLTTLNERQ 527

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKI 463
           R  L  + SS   ++QLI+D+LD+SK+E+G M L  A F P ++V+ VL   AA+++ K 
Sbjct: 528 RAYLRTIQSSSATLMQLISDVLDVSKIEAGQMALTLAAFNPLDLVREVLGNFAASAMAKD 587

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L     I  +VP ++IGDV RIRQ+L NL++NA+KFT  G+V +++ ++
Sbjct: 588 LQFYACIDTEVPAQLIGDVTRIRQVLNNLVNNALKFTDIGRVVLRVKLL 636



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 172/413 (41%), Gaps = 96/413 (23%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            ++  V DTGIGI       LF  + QVS  H    GGTGLGL+IC  L E+MGG L + S
Sbjct: 645  LQWQVADTGIGIAHEQQERLFEAFYQVSGAH--HAGGTGLGLSICWHLAEMMGGHLRMVS 702

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSS 711
            +   GS+F+ +L     P +E S                          +P   G L S+
Sbjct: 703  ETGLGSSFSLVLEL---PEDEQSG----------------------LACRP---GLLKSA 734

Query: 712  NGTSRSK-KLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLE-DACSVAEVAETLS 769
                RS  + L +S+G  +  K  G   +S          E AP E + C + E+    +
Sbjct: 735  CVHVRSPVRELADSVG--AWLKAWGCKVSS---------GEAAPSELETCVLLELLPMAA 783

Query: 770  EPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEAN--REMIQTSKTNEP 827
             P SS    P P      S    C  E     +        H+ A   + + Q    + P
Sbjct: 784  GPASS----PWPGPRVRASMDAPCQPE----LREDGWRVGLHNLAGIGQALAQALGGDIP 835

Query: 828  QKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSID 887
            +             Q+P+++ A       +   ++L+ EDN +N  + +  +++LG  + 
Sbjct: 836  E-------------QTPANACAR----SGRLDLEVLVAEDNPVNQALLREQLEELGCRVS 878

Query: 888  VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMP 947
            +  +G +A+       +DL+L DV MP M G + T+ +R   +T                
Sbjct: 879  LAGDGRQALQLFDSGRFDLLLSDVNMPNMTGYELTQALRERGET---------------- 922

Query: 948  SSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                      +PII +TANAL E  E C A GM+S++ KP+T   L E L ++
Sbjct: 923  ----------LPIIGVTANALREEGERCRAVGMNSWLVKPITLHTLHELLSEF 965


>gi|359462985|ref|ZP_09251548.1| two-component hybrid sensor and regulator [Acaryochloris sp. CCMEE
           5410]
          Length = 1076

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 166/335 (49%), Gaps = 26/335 (7%)

Query: 198 ESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSL--- 254
           + +T+ +   + + ++++ L+ +   L  V+   P ++  +D+E  Y      F +    
Sbjct: 386 QDITSRKLAEAHLVQMNEDLQTSQQLLRRVIDTIPQLLFWKDREGIYLDCNLQFATYVGL 445

Query: 255 -HEEDILGKTDVEI-FSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVE- 311
              E ++GK D ++ ++   +   Q  ++ +L  G         ET L        ++E 
Sbjct: 446 SQPEQVVGKKDTDLPWAPPELAAFQASEQRILTTG-------EIETALLKRHNPDTWLET 498

Query: 312 ---PVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETM 368
              P+    G  +G+  +  DVT + +   K+  +  E+   K +    ++         
Sbjct: 499 IKVPLHQADGTIMGILGVYQDVTARQQADAKLRNVNAELQTAKDRADAASQV-------- 550

Query: 369 RAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDL 428
              + LA MSHE+R+P+  V+ M  +L++T LD +Q+  +  + SSGD +L LINDILD 
Sbjct: 551 -KSEFLANMSHELRTPMNAVIGMTGLLTHTSLDAQQQDFVDTIRSSGDALLCLINDILDF 609

Query: 429 SKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIAD-DVPIEVIGDVLRIRQ 487
           SK+E+G +++E   F  +  ++  L+  A    K  +    +AD D+P  ++GDV R+RQ
Sbjct: 610 SKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLEIAYLADPDLPCGIVGDVTRLRQ 669

Query: 488 ILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGL 522
           +L NL++N +KFT  G+V + +  V      +EGL
Sbjct: 670 VLVNLLTNGVKFTDNGEVIVYVKDVTAEMQDREGL 704



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 26/163 (15%)

Query: 842  QSPSSSSAEVPETKPKPKPK---ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHA 898
            QS ++ ++E+   +P    K   +LL ED  +N  VA  ++KQLG+  DV NNG E + A
Sbjct: 929  QSENTQNSELDRPQPSTNSKTLHLLLAEDVVVNQKVALLILKQLGYEADVANNGKEVLEA 988

Query: 899  VQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958
            +  Q YD++LMD+ MP MDGL A+R I+       W   A                  R 
Sbjct: 989  LHRQPYDVVLMDLQMPEMDGLTASRAIQE-----TWSPEA------------------RP 1025

Query: 959  PIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
             IIA+TANA+    E+C   GM  +VSKP+  ++LK  LE+Y 
Sbjct: 1026 YIIALTANAMQGDREKCLEAGMQDYVSKPIRSEELKAALERYL 1068



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
           V DTGIGIPE+ L  LF+ + QV +   RKYGGTGLGLAI K+L ELMGG++ V S++  
Sbjct: 719 VKDTGIGIPEDRLNRLFQSFSQVDSSTTRKYGGTGLGLAISKRLCELMGGKIWVDSEIGI 778

Query: 656 GSTFTFILPYQVSPIEENSD 675
           GSTF+F +    +PI +  D
Sbjct: 779 GSTFSFTI---AAPIVDTFD 795


>gi|116052651|ref|YP_792966.1| kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|421176764|ref|ZP_15634423.1| putative kinase sensor protein [Pseudomonas aeruginosa CI27]
 gi|237651846|gb|AAM15534.2|AF482691_3 putative sensor kinase [Pseudomonas aeruginosa]
 gi|115587872|gb|ABJ13887.1| putative kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|404530401|gb|EKA40401.1| putative kinase sensor protein [Pseudomonas aeruginosa CI27]
          Length = 1084

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 346 EIAVQKAKETELNKTIHITEETMRAKQM-LATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404
           +I V    ET L+      +   +AK + LA MSHEIR+PL GV+   E+L  T L+  Q
Sbjct: 468 DITVHCEAETALSNAKRAADAASQAKTLFLARMSHEIRTPLYGVLGTLELLDLTTLNERQ 527

Query: 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQT-AAASLQKI 463
           R  L  + SS   ++QLI+D+LD+SK+E+G M L  A F P ++V+ VL   AA+++ K 
Sbjct: 528 RAYLRTIQSSSATLMQLISDVLDVSKIEAGQMALTLAAFNPLDLVREVLGNFAASAMAKD 587

Query: 464 LMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVV 512
           L     I  +VP ++IGDV RIRQ+L NL++NA+KFT  G+V +++ ++
Sbjct: 588 LQFYACIDTEVPAQLIGDVTRIRQVLNNLVNNALKFTDIGRVVLRVKLL 636



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 172/413 (41%), Gaps = 96/413 (23%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            ++  V DTGIGI       LF  + QVS  H    GGTGLGL+IC  L E+MGG L + S
Sbjct: 645  LQWQVADTGIGIAHEQQERLFEAFYQVSGAH--HAGGTGLGLSICWHLAEMMGGHLRMVS 702

Query: 652  KVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSS 711
            +   GS+F+ +L     P +E S                          +P   G L S+
Sbjct: 703  ETGLGSSFSLVLEL---PEDEQSG----------------------LACRP---GLLKSA 734

Query: 712  NGTSRSK-KLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLE-DACSVAEVAETLS 769
                RS  + L +S+G  +  K  G   +S          E AP E + C + E+    +
Sbjct: 735  CVHVRSPVRELADSVG--AWLKAWGCKVSS---------GEAAPSELETCVLLELLPMAA 783

Query: 770  EPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEAN--REMIQTSKTNEP 827
             P SS    P P      S    C  E     +        H+ A   + + Q    + P
Sbjct: 784  GPASS----PWPGPRVRASMDAPCQPE----LREDGWRVGLHNLAGIGQALAQALGGDIP 835

Query: 828  QKICEMQEKPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSID 887
            +             Q+P+++ A       +   ++L+ EDN +N  + +  +++LG  + 
Sbjct: 836  E-------------QTPANACAR----SGRLDLEVLVAEDNPVNQALLREQLEELGCRVS 878

Query: 888  VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMP 947
            +  +G +A+       +DL+L DV MP M G + T+ +R   +T                
Sbjct: 879  LAGDGRQALQLFDSGRFDLLLSDVNMPNMTGYELTQALRERGET---------------- 922

Query: 948  SSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                      +PII +TANAL E  E C A GM+S++ KP+T   L E L ++
Sbjct: 923  ----------LPIIGVTANALREEGERCRAVGMNSWLVKPITLHTLHELLSEF 965


>gi|406865413|gb|EKD18455.1| hsp90-like protein [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
          Length = 1646

 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 113/188 (60%), Gaps = 11/188 (5%)

Query: 322  GVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK-QMLATMSHE 380
            GV  + MD+T +++ RE       ++  Q+ + + L       +E  R K Q LA MSHE
Sbjct: 938  GVIGVSMDIT-EIKDREL------DLQAQEKENSRLLANEAAAKEASRLKSQFLANMSHE 990

Query: 381  IRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEA 440
            IR+P+ GV+ MAE+L++  LD EQ+     +  S + +L +INDILD SKVESG + +E 
Sbjct: 991  IRTPIAGVIGMAELLTDMDLDEEQQDCAENIQRSANGLLTVINDILDFSKVESGRLDIEE 1050

Query: 441  AKFRPREVVKHVLQTAA-ASLQKILMLEGDI--ADDVPIEVIGDVLRIRQILTNLISNAI 497
             +F    VV+ V +    A+ +K LM + DI    D  + V+GD  R+RQI+TNL++N+I
Sbjct: 1051 VQFSLSVVVRDVSKMLGFAAERKNLMFKSDIDVGLDTDLIVMGDPGRVRQIITNLLTNSI 1110

Query: 498  KFTPEGKV 505
            KFT EG V
Sbjct: 1111 KFTSEGYV 1118



 Score = 96.7 bits (239), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 30/174 (17%)

Query: 836  KPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEA 895
            KP  +S +P + S      + + K KILLVEDN IN  +A   +++LG ++  V NG EA
Sbjct: 1264 KPRSVSMTPPTPSELDLSPEERAKVKILLVEDNAINQQIALKTIRKLGFAVSAVWNGKEA 1323

Query: 896  VHAVQCQNY--------DLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMP 947
            +  V   +         D+ILMDV MP++DG +AT L+R  +                  
Sbjct: 1324 LDYVLASDSRHPPQPKPDIILMDVQMPIIDGYRATHLLRHHK------------------ 1365

Query: 948  SSGSSNHFKR-IPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
                 NH  R IPI+AMTA+A+    E+C   GMD +++KPV  + L++ L ++
Sbjct: 1366 ---PYNHLARNIPIVAMTASAIQGDREKCKKAGMDDYLAKPVKGKTLEKMLVRW 1416



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 47/74 (63%)

Query: 592  IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
            ++  V D+GIGI E     LF+ + Q  +  AR++GGTGLGL I K LV+LM G + + S
Sbjct: 1134 VKFVVEDSGIGIEEEVRKRLFKPFSQADSSTARRFGGTGLGLTISKNLVDLMHGTIGLES 1193

Query: 652  KVHCGSTFTFILPY 665
             +  G+T TF +P+
Sbjct: 1194 SLGAGTTATFTIPF 1207


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.313    0.130    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,420,931,817
Number of Sequences: 23463169
Number of extensions: 675313814
Number of successful extensions: 2374869
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 62090
Number of HSP's successfully gapped in prelim test: 49762
Number of HSP's that attempted gapping in prelim test: 2059536
Number of HSP's gapped (non-prelim): 244781
length of query: 1002
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 849
effective length of database: 8,769,330,510
effective search space: 7445161602990
effective search space used: 7445161602990
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 82 (36.2 bits)