BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039716
(1002 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/146 (68%), Positives = 121/146 (82%), Gaps = 10/146 (6%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
ILLVEDNKIN+MVAKSMMKQLGH++D+ NNGVEA+ A+ +YDL+LMDVCMPV+DGLKA
Sbjct: 11 ILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINSSSYDLVLMDVCMPVLDGLKA 70
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH------FKRIPIIAMTANALSESAEEC 975
TRLIRS+E+TGNW+AA EAG++ S S N R+PIIAMTAN L+ES+EEC
Sbjct: 71 TRLIRSYEETGNWNAAIEAGVD----ISTSENEQVCMRPTNRLPIIAMTANTLAESSEEC 126
Query: 976 FANGMDSFVSKPVTFQKLKECLEQYF 1001
+ANGMDSF+SKPVT QKL+ECL+QY
Sbjct: 127 YANGMDSFISKPVTLQKLRECLQQYL 152
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 26/139 (18%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D+ IN + + LG+ N+GV+A++ + + D++L DV MP MDG +
Sbjct: 132 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 191
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
T+ IR T +P+I +TANAL+E + C +GMD
Sbjct: 192 TQRIRQLGLT--------------------------LPVIGVTANALAEEKQRCLESGMD 225
Query: 982 SFVSKPVTFQKLKECLEQY 1000
S +SKPVT +K+ L Y
Sbjct: 226 SCLSKPVTLDVIKQTLTLY 244
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 26/139 (18%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D+ IN + + LG+ N+GV+A++ + + D++L DV MP MDG +
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRL 70
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
T+ IR T +P+I +TANAL+E + C +GMD
Sbjct: 71 TQRIRQLGLT--------------------------LPVIGVTANALAEEKQRCLESGMD 104
Query: 982 SFVSKPVTFQKLKECLEQY 1000
S +SKPVT +K+ L Y
Sbjct: 105 SCLSKPVTLDVIKQTLTLY 123
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 24/134 (17%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+L+ EDN I +VA +++ + I VV NG++A+ A Q + +D+I+MD+ MPVMDGL+A
Sbjct: 13 VLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEA 72
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
IR++E T N KR IIA+TA+ + + +D
Sbjct: 73 VSEIRNYERTHNT---------------------KRASIIAITADTIDDDRP---GAELD 108
Query: 982 SFVSKPVTFQKLKE 995
+VSKP+ +L++
Sbjct: 109 EYVSKPLNPNQLRD 122
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 31/145 (21%)
Query: 862 ILLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQ-----CQNYDLILMDVCMPV 915
IL+VEDN +N V K M+ G +I++ +G EA V+ +NY++I MDV MP
Sbjct: 5 ILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPK 64
Query: 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
+DGL +T++IR D G PI+A+TA A + +EC
Sbjct: 65 VDGLLSTKMIR--RDLGYTS-----------------------PIVALTAFADDSNIKEC 99
Query: 976 FANGMDSFVSKPVTFQKLKECLEQY 1000
+GM+ F+SKP+ KLK L ++
Sbjct: 100 LESGMNGFLSKPIKRPKLKTILTEF 124
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 31/145 (21%)
Query: 862 ILLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQ-----CQNYDLILMDVCMPV 915
IL+VEDN +N V K M+ G +I++ +G EA V+ +NY++I MDV MP
Sbjct: 4 ILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPK 63
Query: 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEEC 975
+DGL +T++IR D G PI+A+TA A + +EC
Sbjct: 64 VDGLLSTKMIR--RDLGYTS-----------------------PIVALTAFADDSNIKEC 98
Query: 976 FANGMDSFVSKPVTFQKLKECLEQY 1000
+GM+ F+SKP+ KLK L ++
Sbjct: 99 LESGMNGFLSKPIKRPKLKTILTEF 123
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
V D GIGIP+ + +F ++ +V RK GGTGLGLAI K++V+ GG + S
Sbjct: 82 VKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGK 141
Query: 656 GSTFTFILPYQ 666
G+T TF LPY+
Sbjct: 142 GTTITFTLPYK 152
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%), Gaps = 2/31 (6%)
Query: 473 DVPIEVIGDVLRIRQILTNLISNAIKFTPEG 503
D+ +E+ D +I Q+L N+ISNA+K++PEG
Sbjct: 34 DLYVEIDQD--KITQVLDNIISNALKYSPEG 62
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%)
Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
V D GIGIP++A +F ++ +V + + GTGLGLAI K++VEL GGR+ V S+V
Sbjct: 178 VEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGK 237
Query: 656 GSTFTFILP 664
GS F +P
Sbjct: 238 GSRFFVWIP 246
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 80/135 (59%), Gaps = 8/135 (5%)
Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNT--KLDREQ-RQLLGVMISSGDLVLQLINDILDL 428
+ +A +SHE+R+PLT + + AE + N+ +LD ++ L V+I + + L+N++LD
Sbjct: 22 EFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDF 81
Query: 429 SKVESGVMKLEAAKFRPREVVK---HVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
S++E +++ K ++V+ + ++ A+S ++ E ++ P+E D RI
Sbjct: 82 SRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVP--CPVEAYIDPTRI 139
Query: 486 RQILTNLISNAIKFT 500
RQ+L NL++N +K++
Sbjct: 140 RQVLLNLLNNGVKYS 154
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 45/69 (65%)
Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
V D GIGIP++A +F ++ +V + + GTGLGLAI K++VEL GGR+ V S+V
Sbjct: 178 VEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGK 237
Query: 656 GSTFTFILP 664
GS F +P
Sbjct: 238 GSRFFVWIP 246
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 80/135 (59%), Gaps = 8/135 (5%)
Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNT--KLDREQ-RQLLGVMISSGDLVLQLINDILDL 428
+ +A +SHE+R+PLT + + AE + N+ +LD ++ L V+I + + L+N++LD
Sbjct: 22 EFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDF 81
Query: 429 SKVESGVMKLEAAKFRPREVVK---HVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRI 485
S++E +++ K ++V+ + ++ A+S ++ E ++ P+E D RI
Sbjct: 82 SRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVP--CPVEAYIDPTRI 139
Query: 486 RQILTNLISNAIKFT 500
RQ+L NL++N +K++
Sbjct: 140 RQVLLNLLNNGVKYS 154
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 68/136 (50%), Gaps = 22/136 (16%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+L+ +D++ N MV + ++++ GH + VN + + A+ ++YD +++D+ MP M+GL
Sbjct: 17 MLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDM 76
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ +R + +G + P++ ++A+ E+ C G
Sbjct: 77 LKQLRVMQASG----------------------MRYTPVVVLSADVTPEAIRACEQAGAR 114
Query: 982 SFVSKPVTFQKLKECL 997
+F++KPV KL + L
Sbjct: 115 AFLAKPVVAAKLLDTL 130
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 56.2 bits (134), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 26/127 (20%)
Query: 862 ILLVEDNKINVMVAKSMM--KQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
+L+VEDN ++ + + ++ K + ++ V+NG +A++ VQ YDLI++D+ +P+ +G
Sbjct: 8 VLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGF 67
Query: 920 KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
+ +R G++ H PI+ +T N + A++C A G
Sbjct: 68 EVXSAVR---------------------KPGANQH---TPIVILTDNVSDDRAKQCXAAG 103
Query: 980 MDSFVSK 986
S V K
Sbjct: 104 ASSVVDK 110
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
pdb|4EW8|B Chain B, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase
(Divl) From Caulobacter Crescentus Cb15 At 2.50 A
Resolution
Length = 268
Score = 56.2 bits (134), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
+R DV DTG G+P + +F +++ R GG GLGLA+ K LVEL GG + + S
Sbjct: 188 VRLDVSDTGRGVPFHVQAHIFDRFV------GRDRGGPGLGLALVKALVELHGGWVALES 241
Query: 652 KVHCGSTFTFILPYQVSP 669
+ GSTFT LP P
Sbjct: 242 EPGNGSTFTCHLPETQQP 259
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Query: 358 NKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTK-LDREQRQLLGVMISSGD 416
+++ + E + + +S+E+R+PLT ++ +E+L + R + + ++
Sbjct: 28 DRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAAT 87
Query: 417 LVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVP 475
+ + I+D+LD++++++G M LE R +++ + + A Q + L + +DV
Sbjct: 88 QLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG 147
Query: 476 IEVIGDVLRIRQILTNLISNAIKFTPEG 503
+ + GD R+ Q L +L+ NA++ TP G
Sbjct: 148 L-IRGDGKRLAQTLDHLVENALRQTPPG 174
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk. Structure
At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 24/140 (17%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+L+VEDN++N+ + +++ G+ G+ A+ + DLILMD+ +P + GL+
Sbjct: 4 VLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEV 63
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
T+ ++ +D + IP++A+TA A+ E G +
Sbjct: 64 TKWLKEDDDLAH------------------------IPVVAVTAFAMKGDEERIREGGCE 99
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+++SKP++ E +++
Sbjct: 100 AYISKPISVVHFLETIKRLL 119
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 37/140 (26%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVH-------------AVQCQNYDLI 907
+L+V+DN I+ VA +K++G S ++ ++G EA+ +V +D I
Sbjct: 64 VLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYI 123
Query: 908 LMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA-N 966
MD MP MDG +ATR IR E ++ R PIIA++ +
Sbjct: 124 FMDCQMPEMDGYEATREIRKVE----------------------KSYGVRTPIIAVSGHD 161
Query: 967 ALSESAEECFANGMDSFVSK 986
SE A E GMD+F+ K
Sbjct: 162 PGSEEARETIQAGMDAFLDK 181
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+DN + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 5 LVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 64
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 65 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 100
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 101 GYVVKPFTAATLEEKLNKIF 120
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+DN + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 5 LVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 64
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ TA A E+ G
Sbjct: 65 LKTIRA-------DGAMSA-----------------LPVLMTTAEAKKENIIAAAQAGAS 100
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 101 GYVVKPFTAATLEEKLNKIF 120
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWMMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTARAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14 Replaced
By Gly, Ser 15 Replaced By Gly, And Met 17 Replaced By
Gly
Length = 129
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 9 LVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 68
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 69 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced By
Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By Leu
(Stabilizing Mutations In Helix 4)
Length = 129
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 68
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A +E+ + G
Sbjct: 69 LKTIRA-------DGAMSA-----------------LPVLMVTAEADAENIKALAQAGAS 104
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWRMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA+A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTAHAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed
With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r Complexed
With Bef3- And Mn2+
Length = 128
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTARAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89q
Length = 132
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 862 ILLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 11 FLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMDGLE 70
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 71 LLKTIRA-------DGAMSA-----------------LPVLMVTAQAKKENIIAAAQAGA 106
Query: 981 DSFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 107 SGYVVKPFTAATLEEKLNKIF 127
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17 Replaced
By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17 Replaced
By Gly (M17g)
Length = 130
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 10 LVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 69
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 70 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 105
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 106 GYVVKPFTAATLEEKLNKIF 125
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENVIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWKMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTAYAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWMMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTALAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 68
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 69 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The N-Terminus
Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein In
Aqueous Solution By Nuclear Magnetic Resonance Methods
Length = 129
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 68
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 69 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And Dynamics
Of Chemotaxis Y Protein Using Three-And Four-Dimensional
Heteronuclear (13c,15n) Nmr Spectroscopy
Length = 128
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89k
Length = 132
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMDGLEL 71
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 72 LKTIRA-------DGAMSA-----------------LPVLMVTAKAKKENIIAAAQAGAS 107
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMDGLEL 71
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 72 LKTIRA-------DGAMSA-----------------LPVLMVTARAKKENIIAAAQAGAS 107
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of
The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation Of
The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWRMPNMDGLEL 68
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 69 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response Regulator
Of Bacterial Chemotaxis
Length = 128
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q + I+ D MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIICDWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D+A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DSAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 24/126 (19%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+VED+ K ++++ G+ + V NG EAV + DLI+ DV MP MDG
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYAL 69
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
R ++ D + IP+I +T + G D
Sbjct: 70 CRWLKGQPD------------------------LRTIPVILLTILSDPRDVVRSLECGAD 105
Query: 982 SFVSKP 987
F++KP
Sbjct: 106 DFITKP 111
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTPATLEEKLNKIF 123
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 68
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 69 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 105 GYVVKPFTPATLEEKLNKIF 124
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At 59
And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59 And
89: N59d E89y
Length = 132
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 12 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWDMPNMDGLEL 71
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 72 LKTIRA-------DGAMSA-----------------LPVLMVTAYAKKENIIAAAQAGAS 107
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 108 GYVVKPFTAATLEEKLNKIF 127
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q + I+ D MP MDGL+
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGLEL 68
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D+A A +P++ +TA A E+ G
Sbjct: 69 LKTIRA-------DSAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q + I+ D MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D+A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DSAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of Chey
Length = 130
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 10 LVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 69
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 70 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 105
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 106 GYVVKPFTAATLEEKLNKIF 125
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 68
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +T+ A E+ G
Sbjct: 69 LKTIRA-------DGAMSA-----------------LPVLMVTSEAKKENIIAAAQAGAS 104
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 68
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +T A E+ G
Sbjct: 69 LKTIRA-------DGAMSA-----------------LPVLMVTTEAKKENIIAAAQAGAS 104
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 68
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +T A E+ G
Sbjct: 69 LKTIRA-------DGAMSA-----------------LPVLMVTVEAKKENIIAAAQAGAS 104
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ AM + +P++ +TA A E+ G
Sbjct: 68 LKTIRA---------------XXAMSA---------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 68
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +T A E+ G
Sbjct: 69 LKTIRA-------DGAMSA-----------------LPVLMVTMEAKKENIIAAAQAGAS 104
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ + A A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of Chey
Length = 127
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 25/129 (19%)
Query: 874 VAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTG 932
+ ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+ + IR+
Sbjct: 18 IVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA----- 72
Query: 933 NWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQK 992
D A A +P++ +TA A E+ G +V KP T
Sbjct: 73 --DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAAT 113
Query: 993 LKECLEQYF 1001
L+E L + F
Sbjct: 114 LEEKLNKIF 122
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 25/129 (19%)
Query: 874 VAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTG 932
+ ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+ + IR+
Sbjct: 19 IVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRA----- 73
Query: 933 NWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQK 992
D A A +P++ +TA A E+ G +V KP T
Sbjct: 74 --DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAAT 114
Query: 993 LKECLEQYF 1001
L+E L + F
Sbjct: 115 LEEKLNKIF 123
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 862 ILLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
IL+V+D + K++++ LG ++ ++G+ A+ ++ ++D ++ D MP M G+
Sbjct: 15 ILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGID 74
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
+ IR+ E+ K +P++ +TA A E E G+
Sbjct: 75 LLKNIRADEE------------------------LKHLPVLMITAEAKREQIIEAAQAGV 110
Query: 981 DSFVSKPVTFQKLKECLEQYF 1001
+ ++ KP T LKE L++ F
Sbjct: 111 NGYIVKPFTAATLKEKLDKIF 131
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 65/137 (47%), Gaps = 24/137 (17%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK- 920
+L++++N ++ MV K ++ LG + V++ E + V + ++ MDVCMP ++ +
Sbjct: 10 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVS-HEHKVVFMDVCMPGVENYQI 68
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
A R+ F + +R ++A++ N + E+C + G+
Sbjct: 69 ALRIHEKF----------------------TKQRHQRPLLVALSGNTDKSTKEKCMSFGL 106
Query: 981 DSFVSKPVTFQKLKECL 997
D + KPV+ +++ L
Sbjct: 107 DGVLLKPVSLDNIRDVL 123
>pdb|3I42|A Chain A, Structure Of Response Regulator Receiver Domain
(Chey-Like) From Methylobacillus Flagellatus
Length = 127
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 25/136 (18%)
Query: 863 LLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKAT 922
L+VED + K +++ LG D V +G +A+HA+ + YD + +D+ +P GL
Sbjct: 7 LIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALV 66
Query: 923 RLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDS 982
+ +R A+P +S K + + N L + A E F D
Sbjct: 67 KQLR------------------ALPMEKTS---KFVAVSGFAKNDLGKEACELF----DF 101
Query: 983 FVSKPVTFQKLKECLE 998
++ KP+ L+ L+
Sbjct: 102 YLEKPIDIASLEPILQ 117
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ + A A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ MP MDGL+
Sbjct: 9 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISXWNMPNMDGLEL 68
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 69 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 104
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 105 GYVVKPFTAATLEEKLNKIF 124
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISXWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V + ++++K+LG ++++ +GV+A++ +Q Y ++ D MP MDGL+
Sbjct: 8 LVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQAGGYGFVISDWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of Chey
Length = 128
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISAWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVTAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 28/140 (20%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVN--NGVEAVHAVQCQ-NYDLILMDVCMPVMDG 918
+L+V+D+ + K+ + +LG+ DV+ +GVEA + + +++ D MP M+G
Sbjct: 8 LLVVDDSSTMRRIIKNTLSRLGYE-DVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 66
Query: 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
L + +RS + FK IPII +TA
Sbjct: 67 LDLVKKVRS------------------------DSRFKEIPIIMITAEGGKAEVITALKA 102
Query: 979 GMDSFVSKPVTFQKLKECLE 998
G+++++ KP T Q LKE LE
Sbjct: 103 GVNNYIVKPFTPQVLKEKLE 122
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISXWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ + A A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GYVVKPFTAATLEEKLNKIF 123
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 24/128 (18%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+LLV+D+ + + +K+ G+ + NG A+ + DLI++D+ MPVMDG
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMDGF-- 62
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+++ ++ W KRIP+I +TA E + G
Sbjct: 63 -TVLKKLQEKEEW---------------------KRIPVIVLTAKGGEEDESLALSLGAR 100
Query: 982 SFVSKPVT 989
+ KP +
Sbjct: 101 KVMRKPFS 108
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+D + ++++K+LG ++++ +GV+A++ +Q Y ++ MP MDGL+
Sbjct: 8 LVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISXWNMPNMDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ + A A E+ G
Sbjct: 68 LKTIRA-------DGAMSA-----------------LPVLMVIAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 28/140 (20%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVN--NGVEAVHAVQCQ-NYDLILMDVCMPVMDG 918
+L+V+D+ + K+ + +LG+ DV+ +GVEA + + +++ D MP M+G
Sbjct: 8 LLVVDDSSTMRRIIKNTLSRLGYE-DVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNG 66
Query: 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
L + +RS + FK IPII +T
Sbjct: 67 LDLVKKVRS------------------------DSRFKEIPIIMITTEGGKAEVITALKA 102
Query: 979 GMDSFVSKPVTFQKLKECLE 998
G+++++ KP T Q LKE LE
Sbjct: 103 GVNNYIVKPFTPQVLKEKLE 122
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 590 VWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649
V IR + DTG+G+ + L L Y + GTGLG+ + +++E M G + +
Sbjct: 156 VLIR--IADTGVGMTKEQLERLGEPYFT-----TKGVKGTGLGMMVVYRIIESMNGTIRI 208
Query: 650 TSKVHCGSTFTFILP 664
S++H G+T + LP
Sbjct: 209 ESEIHKGTTVSIYLP 223
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 363 ITEETMRA-KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQR-QLLGVMISSGDLVLQ 420
I E M A + A++SHEIR+PLT +++ L ++R Q + I D
Sbjct: 6 IRAEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEA 65
Query: 421 LINDILDLSKV-----ESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVP 475
+I D L +K E +KLE R ++++ + + +Q L P
Sbjct: 66 IITDYLTFAKPAPETPEKLNVKLEIE--RVIDILRPLANMSCVDIQATL---------AP 114
Query: 476 IEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYV 511
VIG+ + RQ L N++ NAI+ P G +++YV
Sbjct: 115 FSVIGEREKFRQCLLNVMKNAIEAMPNGGT-LQVYV 149
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 25/140 (17%)
Query: 863 LLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
L+V+ + ++++K+LG ++++ +GV+A++ +Q Y ++ D P DGL+
Sbjct: 8 LVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNXPNXDGLEL 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ IR+ D A A +P++ +TA A E+ G
Sbjct: 68 LKTIRA-------DGAXSA-----------------LPVLXVTAEAKKENIIAAAQAGAS 103
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
+V KP T L+E L + F
Sbjct: 104 GWVVKPFTAATLEEKLNKIF 123
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 96/205 (46%), Gaps = 26/205 (12%)
Query: 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ-RQLLGVMISSGDLVLQLINDILDLSK 430
+M A ++HEIR+P+T + + D E ++ + ++ + + ++ +IL+ SK
Sbjct: 134 EMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSK 193
Query: 431 VESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILT 490
E V LE +F E+++ V ++K+ + D+ + V D RI+Q+L
Sbjct: 194 -ERQV--LEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLI 250
Query: 491 NLISNAIKFTPE-GKVGI---------KLYVVPEPPFAKEGLKQK--SKAYQSATDA--- 535
NL+ NAI+ T E GK+ I ++ V P E LK+K S + + T
Sbjct: 251 NLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQGTGL 310
Query: 536 -------VKEEKHQPKSQTASDQNG 553
+ E++H K T + +NG
Sbjct: 311 GLSICRKIIEDEHGGKIWTENRENG 335
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
+R V+++G IPE +F + K GTGLGL+IC++++E G T
Sbjct: 277 VRVSVWNSGPPIPEELKEKIFSPFFTT------KTQGTGLGLSICRKIIEDEHGGKIWTE 330
Query: 652 KVHCGSTFTFILP 664
G F F +P
Sbjct: 331 NRENGVVFIFEIP 343
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 24/128 (18%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+LLV+D+ + + +K+ G+ + NG A+ + DLI++ + MPVMDG
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGF-- 62
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+++ ++ W KRIP+I +TA E + G
Sbjct: 63 -TVLKKLQEKEEW---------------------KRIPVIVLTAKGGEEDESLALSLGAR 100
Query: 982 SFVSKPVT 989
+ KP +
Sbjct: 101 KVMRKPFS 108
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 30/139 (21%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSI-DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
+L+ ED + M M+++ G+ I +G EAV + DL++MDV MP DG+
Sbjct: 16 VLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGI- 74
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI-PIIAMTANALSESAEECFANG 979
DAA+E KRI PI+ +TA + + E G
Sbjct: 75 --------------DAASEIA-------------SKRIAPIVVLTAFSQRDLVERARDAG 107
Query: 980 MDSFVSKPVTFQKLKECLE 998
+++ KP + L +E
Sbjct: 108 AMAYLVKPFSISDLIPAIE 126
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
I++VED + +S Q G+++ V +G Q Q+ DLIL+D+ +P +GL
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIXQNQSVDLILLDINLPDENGLXL 64
Query: 922 TRLIRSFEDTG 932
TR +R G
Sbjct: 65 TRALRERSTVG 75
>pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The
Two-component System Transmitter Protein Nrii (ntrb)
Length = 160
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 593 RCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
R DV D G GIP + TLF Y VS + GGTGLGL+I + L++ G++ TS
Sbjct: 93 RIDVEDNGPGIPPHLQDTLF--YPMVSG----REGGTGLGLSIARNLIDQHSGKIEFTS 145
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D K + K M + G+ + NG EA+ + + D+I++D+ +P +DGL+
Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEV 63
Query: 922 TRLIR 926
+ IR
Sbjct: 64 AKTIR 68
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 28/140 (20%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVN--NGVEAVHAVQCQNYDLILMDVC-MPVMDG 918
+L+V+D+ + K+ + +LG+ DV+ +GVEA + +L+ MP M+G
Sbjct: 8 LLVVDDSSTMRRIIKNTLSRLGYE-DVLEAEHGVEAWEKLDANADTKVLITAWNMPEMNG 66
Query: 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
L + +RS + FK IPII +T
Sbjct: 67 LDLVKKVRS------------------------DSRFKEIPIIMITTEGGKAEVITALKA 102
Query: 979 GMDSFVSKPVTFQKLKECLE 998
G+++++ KP T Q LKE LE
Sbjct: 103 GVNNYIVKPFTPQVLKEKLE 122
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTS 651
+R V+++G IPE +F + K GTGLGL+IC++++E G T
Sbjct: 80 VRVSVWNSGPPIPEELKEKIFSPFFTT------KTQGTGLGLSICRKIIEDEHGGKIWTE 133
Query: 652 KVHCGSTFTFILP 664
G F F +P
Sbjct: 134 NRENGVVFIFEIP 146
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 22/138 (15%)
Query: 438 LEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAI 497
+E +F E+++ V ++K+ + D+ + V D RI+Q+L NL+ NAI
Sbjct: 1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAI 60
Query: 498 KFTPE-GKVGI---------KLYVVPEPPFAKEGLKQK--SKAYQSATDA---------- 535
+ T E GK+ I ++ V P E LK+K S + + T
Sbjct: 61 EATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQGTGLGLSICRK 120
Query: 536 VKEEKHQPKSQTASDQNG 553
+ E++H K T + +NG
Sbjct: 121 IIEDEHGGKIWTENRENG 138
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 27/132 (20%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D K + + +++ G+ + ++G EAV V+ DLIL+D+ +P DG++
Sbjct: 5 ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEV 64
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
R +R D +PII +TA G D
Sbjct: 65 CREVRKKYD---------------------------MPIIMLTAKDSEIDKVIGLEIGAD 97
Query: 982 SFVSKPVTFQKL 993
+V+KP + ++L
Sbjct: 98 DYVTKPFSTREL 109
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 27/132 (20%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D K + + +++ G+ + ++G EAV V+ DLIL+D+ +P DG++
Sbjct: 5 ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEV 64
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
R +R D +PII +TA G D
Sbjct: 65 CREVRKKYD---------------------------MPIIMLTAKDSEIDKVIGLEIGAD 97
Query: 982 SFVSKPVTFQKL 993
+V+KP + ++L
Sbjct: 98 DYVTKPFSTREL 109
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 27/126 (21%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D+ + +++ G V+ +G +A+ AV+ DL+L+D+ +P M+G+
Sbjct: 8 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDV 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
R++R+ D+G +PI+ +TA + +G D
Sbjct: 68 CRVLRA--DSG-------------------------VPIVMLTAKTDTVDVVLGLESGAD 100
Query: 982 SFVSKP 987
++ KP
Sbjct: 101 DYIMKP 106
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 862 ILLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
+L+V+D + ++ ++QLG I +G + + + + L++ D MP MDGL
Sbjct: 9 VLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLG 68
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
+ +R A P++ K+ I +TA ++ A G
Sbjct: 69 LLQAVR------------------ANPAT------KKAAFIILTAQGDRALVQKAAALGA 104
Query: 981 DSFVSKPVTFQKLKECLEQYF 1001
++ ++KP T +K+K +E F
Sbjct: 105 NNVLAKPFTIEKMKAAIEAVF 125
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 41/65 (63%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D + V + + +++ G+ + ++G EA+ + + DLI++DV +P +DG++
Sbjct: 6 ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEV 65
Query: 922 TRLIR 926
+ +R
Sbjct: 66 CKQLR 70
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D K + K M + G+ + NG EA+ + + D+I++ + +P +DGL+
Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILXLMLPEIDGLEV 63
Query: 922 TRLIR 926
+ IR
Sbjct: 64 AKTIR 68
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D + K +++ G+ ID NG EA+ NYDL+++D+ MP + GL+
Sbjct: 4 ILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEV 63
Query: 922 TRLIR 926
IR
Sbjct: 64 AGEIR 68
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E.
Coli Osmosensor Envz
Length = 161
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 596 VYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655
V D G GI LF+ + V D AR GTGLGLAI +++V+ G L + +
Sbjct: 82 VEDDGPGIAPEQRKHLFQPF--VRGDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERG 139
Query: 656 GSTFTFILPYQVS 668
G + LP V+
Sbjct: 140 GLSIRAWLPVPVT 152
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+++ +K N K +++ G SID+ N EA+ + YDLI +++ + DG
Sbjct: 7 ILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTL 66
Query: 922 TRLIRS 927
+ IR+
Sbjct: 67 CKKIRN 72
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+VED ++ + S LG + + +GV+A+ + DL++ D+ MP M+GLK
Sbjct: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69
Query: 922 TRLIRSFED 930
IR+ D
Sbjct: 70 LEHIRNRGD 78
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 26/132 (19%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+L+VEDN + K ++ GH +D + EA + + D+ ++D+ +P DGL
Sbjct: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSL 62
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
R RS + + +PI+ +TA + E + G D
Sbjct: 63 IRRWRSNDVS--------------------------LPILVLTARESWQDKVEVLSAGAD 96
Query: 982 SFVSKPVTFQKL 993
+V+KP +++
Sbjct: 97 DYVTKPFHIEEV 108
>pdb|1YS3|A Chain A, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YS3|B Chain B, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YS3|C Chain C, Crystal Structure Of The Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|A Chain A, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|B Chain B, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
pdb|1YSR|C Chain C, Crystal Structure Of Atp Binding Domain Of Prrb From
Mycobacterium Tuberculosis
Length = 150
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 569 DDDPGTPVSHGNSMDEDLEAT---VWIRCDVYDTGIGIPENALPTLFRKYMQVS-ADHAR 624
D+ V HG + L A + + D G G+PE +F ++ + S A H+
Sbjct: 52 DNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHS- 110
Query: 625 KYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP 664
G+GLGLA+ Q +L GG ++ + G+ LP
Sbjct: 111 ---GSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLP 147
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 862 ILLVEDNK-INVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
IL+V+D I +++ + K+ G+ NG++A+ V + DL+L+D+ +P MDG++
Sbjct: 6 ILIVDDQYGIRILLNEVFNKE-GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIE 64
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
+ ++ ++ I +I MTA + A+E G
Sbjct: 65 ILKRMKVIDEN--------------------------IRVIIMTAYGELDMAQESKELGA 98
Query: 981 DSFVSKPVTFQKLKECLEQYFP 1002
+ +KP ++++ +++Y P
Sbjct: 99 LTHFAKPFDIDEIRDAVKKYLP 120
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 26/132 (19%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+L+VED + + +K+ ++DV +G E ++ + +D++++D+ +PV DG
Sbjct: 5 VLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDG--- 61
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
W+ I ++M SG + P++ +TA + E + G D
Sbjct: 62 ------------WE------ILKSMRESGVNT-----PVLMLTALSDVEYRVKGLNMGAD 98
Query: 982 SFVSKPVTFQKL 993
++ KP ++L
Sbjct: 99 DYLPKPFDLREL 110
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative Luxo
Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 28/141 (19%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+LLVED+ ++ K +K + I V G +A+ ++ LI++D+ +P M G
Sbjct: 7 VLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSG--- 63
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQA-MPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
ED +W I Q +P+S +I TA+ + A G
Sbjct: 64 -------EDVLDW-------INQNDIPTS----------VIIATAHGSVDLAVNLIQKGA 99
Query: 981 DSFVSKPVTFQKLKECLEQYF 1001
+ F+ KP+ +LK + +
Sbjct: 100 EDFLEKPINADRLKTSVALHL 120
>pdb|4E7O|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7O|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae
pdb|4E7P|A Chain A, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
pdb|4E7P|B Chain B, Crystal Structure Of Receiver Domain Of Putative Narl
Family Response Regulator Spr1814 From Streptococcus
Pneumoniae In The Presence Of The Phosphoryl Analog
Beryllofluoride
Length = 150
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 20/99 (20%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDV-----VNNGVEAVHAVQCQNYDLILMDVCMPVM 916
+L+ ED M+ +M + L DV NG EA+ ++ ++ D+ ++DV MPV
Sbjct: 23 VLVAEDQS---MLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVK 79
Query: 917 DGLKATRLIRS------------FEDTGNWDAAAEAGIE 943
GL+ IRS F+ G ++ A +AG++
Sbjct: 80 TGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVD 118
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 37.0 bits (84), Expect = 0.053, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 862 ILLVEDNKINVMVAKSMMKQLG--HSIDVVNNGVEAVHAVQCQ-NYDLILMDVCMPVMDG 918
+++V+D + + S +K L + NG EA+ + Q N DLIL+D+ MPVMDG
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDG 75
Query: 919 LKATR 923
++ R
Sbjct: 76 MEFLR 80
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 65/142 (45%), Gaps = 28/142 (19%)
Query: 862 ILLVEDNK-INVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
IL+V+D I +++ + K+ G+ NG++A+ V + DL+L+D+ +P MDG++
Sbjct: 4 ILIVDDQSGIRILLNEVFNKE-GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIE 62
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
+ ++ ++ I +I MTA + +E G
Sbjct: 63 ILKRMKVIDEN--------------------------IRVIIMTAYGELDMIQESKELGA 96
Query: 981 DSFVSKPVTFQKLKECLEQYFP 1002
+ +KP ++++ +++Y P
Sbjct: 97 LTHFAKPFDIDEIRDAVKKYLP 118
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 36.6 bits (83), Expect = 0.066, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+L+VED + + +K+ ++DV +G E + + +D++++D+ +PV DG +
Sbjct: 5 VLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEPFDVVILDIXLPVHDGWEI 64
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ R E+G+ P++ +TA + E + G D
Sbjct: 65 LKSXR------------ESGVNT--------------PVLXLTALSDVEYRVKGLNXGAD 98
Query: 982 SFVSKPVTFQKL 993
++ KP ++L
Sbjct: 99 DYLPKPFDLREL 110
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 36.6 bits (83), Expect = 0.078, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 24/138 (17%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D+ V V + +++ G+ +G E + A+ DL+L+D+ DG +
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPPDLVLLDIXXEPXDGWET 65
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
I++ D A + IP++ +TA L+ + + ++
Sbjct: 66 LERIKT-------DPAT-----------------RDIPVLXLTAKPLTPEEANEYGSYIE 101
Query: 982 SFVSKPVTFQKLKECLEQ 999
++ KP T +L E +E
Sbjct: 102 DYILKPTTHHQLYEAIEH 119
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 65/142 (45%), Gaps = 28/142 (19%)
Query: 862 ILLVEDNK-INVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
IL+V+D I +++ + K+ G+ NG++A+ V + DL+L+D+ +P MDG++
Sbjct: 6 ILIVDDQYGIRILLNEVFNKE-GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIE 64
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
+ ++ ++ I +I MTA + +E G
Sbjct: 65 IAKRMKVIDEN--------------------------IRVIIMTAYGELDMIQESKELGA 98
Query: 981 DSFVSKPVTFQKLKECLEQYFP 1002
+ +KP ++++ +++Y P
Sbjct: 99 LTHFAKPFDIDEIRDAVKKYLP 120
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f Complexed
With Mn2+
Length = 124
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 65/142 (45%), Gaps = 28/142 (19%)
Query: 862 ILLVEDNK-INVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
IL+V+D I +++ + K+ G+ NG++A+ V + DL+L+D+ +P MDG++
Sbjct: 6 ILIVDDQSGIRILLNEVFNKE-GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIE 64
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
+ ++ ++ I +I MTA + +E G
Sbjct: 65 ILKRMKVIDEN--------------------------IRVIIMTAYGELDMIQESKELGA 98
Query: 981 DSFVSKPVTFQKLKECLEQYFP 1002
+ +KP ++++ +++Y P
Sbjct: 99 LTHFAKPFDIDEIRDAVKKYLP 120
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D ++ + + G+ NG++A+ V + DL+L+D+ +P MDG++
Sbjct: 8 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEI 67
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ ++ ++ I +I MTA + +E G
Sbjct: 68 LKRMKVIDEN--------------------------IRVIIMTAYGELDMIQESKELGAL 101
Query: 982 SFVSKPVTFQKLKECLEQYFP 1002
+ +KP ++++ +++Y P
Sbjct: 102 THFAKPFDIDEIRDAVKKYLP 122
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 36.2 bits (82), Expect = 0.089, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D + K +++ G+ ID NG EA+ NYDL+++D+ P + GL+
Sbjct: 4 ILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEXPGISGLEV 63
Query: 922 TRLIR 926
IR
Sbjct: 64 AGEIR 68
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D ++ + + G+ NG++A+ V + DL+L+D+ +P MDG++
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEI 65
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ ++ ++ I +I MTA + +E G
Sbjct: 66 LKRMKVIDEN--------------------------IRVIIMTAYGELDMIQESKELGAL 99
Query: 982 SFVSKPVTFQKLKECLEQYFP 1002
+ +KP ++++ +++Y P
Sbjct: 100 THFAKPFDIDEIRDAVKKYLP 120
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSI-DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
+L+V+D M+ K ++ + G+ + NG EAV + D++ MD+ MP M+G+
Sbjct: 5 VLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGID 64
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAM 946
A + I + + G +QAM
Sbjct: 65 AIKEIMKIDPNAKIIVCSAMG-QQAM 89
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSI-DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
+L+V+D M+ K ++ + G+ + NG EAV + D++ MD+ MP M+G+
Sbjct: 4 VLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGID 63
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAM 946
A + I + + G +QAM
Sbjct: 64 AIKEIMKIDPNAKIIVCSAMG-QQAM 88
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNY-DLILMDVCM-PVMDGL 919
IL+VED+K +++ + G+++++ G AV V Y DLILMD+ + MDG+
Sbjct: 8 ILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGV 67
Query: 920 KATRLIRSFED 930
+ I+ +
Sbjct: 68 QTALAIQQISE 78
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 65/142 (45%), Gaps = 28/142 (19%)
Query: 862 ILLVEDNK-INVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
IL+V+D I +++ + K+ G+ NG++A+ V + DL+L+D+ +P MDG++
Sbjct: 6 ILIVDDQYGIRILLNEVFNKE-GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIE 64
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
+ ++ ++ I +I MTA + +E G
Sbjct: 65 ILKRMKVIDEN--------------------------IRVIIMTAYGELDMIQESKELGA 98
Query: 981 DSFVSKPVTFQKLKECLEQYFP 1002
+ +KP ++++ +++Y P
Sbjct: 99 LTAFAKPFDIDEIRDAVKKYLP 120
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 26/126 (20%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+ +V+D+ V + + G + NG E + A+ + D++L D+ MP MDGL
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ I+ +P+I MTA++ ++A + G
Sbjct: 66 LKQIK--------------------------QRHPMLPVIIMTAHSDLDAAVSAYQQGAF 99
Query: 982 SFVSKP 987
++ KP
Sbjct: 100 DYLPKP 105
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 862 ILLVEDNKINVMVAKSMMKQLG--HSIDVVNNGVEAVHAVQCQ-NYDLILMDVCMPVMDG 918
+++V+D + + S +K L + NG EA+ + Q N DLIL+++ MPVMDG
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLNIEMPVMDG 75
Query: 919 LKATR 923
++ R
Sbjct: 76 MEFLR 80
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome Response
Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome Response
Regulator, Rcpb
Length = 149
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 955 FKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000
K+IP++ MT ++ + E C++ + S++ KP+ +L E ++ +
Sbjct: 90 LKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTF 135
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 26/126 (20%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+ +V+D+ V + + G + NG E + A+ + D++L D+ MP MDGL
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ I+ +P+I MTA++ ++A + G
Sbjct: 66 LKQIK--------------------------QRHPMLPVIIMTAHSDLDAAVSAYQQGAF 99
Query: 982 SFVSKP 987
++ KP
Sbjct: 100 DYLPKP 105
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 26/138 (18%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+ +V+D+ V + + G + NG E + A+ + D++L D+ MP MDGL
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ I+ +P+I MTA++ ++A + G
Sbjct: 66 LKQIK--------------------------QRHPMLPVIIMTAHSDLDAAVSAYQQGAF 99
Query: 982 SFVSKPVTFQKLKECLEQ 999
++ KP + +E+
Sbjct: 100 DYLPKPFDIDEAVALVER 117
>pdb|3JZ3|A Chain A, Structure Of The Cytoplasmic Segment Of Histidine Kinase
Qsec
pdb|3JZ3|B Chain B, Structure Of The Cytoplasmic Segment Of Histidine Kinase
Qsec
Length = 222
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 369 RAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSG-DLVLQLINDILD 427
R ++ + +HE+RSPLT + E+ + D + R+ + + SG D +L++ +L
Sbjct: 1 RERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLT 60
Query: 428 LSKVES 433
LS+++S
Sbjct: 61 LSRLDS 66
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 24/127 (18%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D + NV + ++ + + + +G A+ D+IL+DV MP MDG
Sbjct: 4 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTV 63
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
R ++ T + IP++ +TA + +G
Sbjct: 64 CRKLKDDPTT------------------------RHIPVVLITALDGRGDRIQGLESGAS 99
Query: 982 SFVSKPV 988
F++KP+
Sbjct: 100 DFLTKPI 106
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 24/127 (18%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D + NV + ++ + + + +G A+ D+IL+DV MP MDG
Sbjct: 5 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTV 64
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
R ++ T + IP++ +TA + +G
Sbjct: 65 CRKLKDDPTT------------------------RHIPVVLITALDGRGDRIQGLESGAS 100
Query: 982 SFVSKPV 988
F++KP+
Sbjct: 101 DFLTKPI 107
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 49/155 (31%)
Query: 862 ILLVEDNKINVMVAKSM------MKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915
+L+V+D+ MV K + MK +G + D G+EAV D+I MD+ MP
Sbjct: 28 VLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKD----GLEAVEKAIELKPDVITMDIEMPN 83
Query: 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE-- 973
++G++A +LI K+ P + ++L+E
Sbjct: 84 LNGIEALKLI-----------------------------MKKAPTRVIMVSSLTEEGAAI 114
Query: 974 --ECFANGMDSFVSKP-----VTFQKLK-ECLEQY 1000
E NG F++KP +TF+++ E LE+
Sbjct: 115 TIEALRNGAVDFITKPHGSISLTFRQVAPELLEKI 149
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 64/142 (45%), Gaps = 28/142 (19%)
Query: 862 ILLVEDNK-INVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
IL+V+D I +++ + K+ G+ NG++A+ V + DL+L+ + +P MDG++
Sbjct: 6 ILIVDDQSGIRILLNEVFNKE-GYQTFQAANGLQALDIVTKERPDLVLLXMKIPGMDGIE 64
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
+ ++ ++ I +I MTA + +E G
Sbjct: 65 ILKRMKVIDEN--------------------------IRVIIMTAYGELDMIQESKELGA 98
Query: 981 DSFVSKPVTFQKLKECLEQYFP 1002
+ +KP ++++ +++Y P
Sbjct: 99 LTHFAKPFDIDEIRDAVKKYLP 120
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 33.1 bits (74), Expect = 0.80, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+VED + KS+ + G+ + +G E + + +L++MD+ +P +GL
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLL 65
Query: 922 TRLIR 926
R +R
Sbjct: 66 ARELR 70
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 26/126 (20%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+ +V+D+ V + + G + NG E + A+ + D++L + MP MDGL
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSXIRMPGMDGLAL 65
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ I+ +P+I MTA++ ++A + G
Sbjct: 66 LKQIK--------------------------QRHPMLPVIIMTAHSDLDAAVSAYQQGAF 99
Query: 982 SFVSKP 987
++ KP
Sbjct: 100 DYLPKP 105
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 24/132 (18%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+L+V+D+ + +++ G+ + +G EA+ + D ++ DV +P +DG
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTL 66
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ +R T K +PI+ +TA + F G +
Sbjct: 67 CKRVRQHPLT------------------------KTLPILXLTAQGDISAKIAGFEAGAN 102
Query: 982 SFVSKPVTFQKL 993
+++KP Q+L
Sbjct: 103 DYLAKPFEPQEL 114
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 24/94 (25%)
Query: 906 LILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965
L+L+D+ +P G+ +L++ + H +R P++ +T
Sbjct: 62 LVLLDLNLPDXTGIDILKLVKE------------------------NPHTRRSPVVILTT 97
Query: 966 NALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999
+ C+ G + +++KPV ++ + Q
Sbjct: 98 TDDQREIQRCYDLGANVYITKPVNYENFANAIRQ 131
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 883 GHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFED 930
G + +G EA+ + D I++D+ MPV+DG+ +R+ ++
Sbjct: 31 GFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDN 78
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 886 IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945
+D NG EAV + D++ MD+ MP M+G+ A + I + + G +QA
Sbjct: 8 VDDATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMG-QQA 66
Query: 946 M 946
M
Sbjct: 67 M 67
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From Desulfuromonas
Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From Desulfuromonas
Acetoxidans
Length = 147
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 24/140 (17%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
I+LV+ + + S + Q G I N +EAV + LI+ + MP + G+
Sbjct: 11 IMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMD- 69
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
L S + P + S IP+IA++ A ++ + G
Sbjct: 70 --LFNSLKKN---------------PQTAS------IPVIALSGRATAKEEAQLLDMGFI 106
Query: 982 SFVSKPVTFQKLKECLEQYF 1001
F++KPV +L +++
Sbjct: 107 DFIAKPVNAIRLSARIKRVL 126
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 882 LGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFE 929
L S++VV ++G A+ ++ D+ L+D MP MDG + +RS+E
Sbjct: 37 LSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYE 87
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 886 IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945
+D NG EAV + D++ MD+ MP M+G+ A + I + + G +QA
Sbjct: 8 VDDATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMG-QQA 66
Query: 946 M 946
M
Sbjct: 67 M 67
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG 918
++LV+D + + K ++K+LG +I + ++A+ A++ + L++ D+ MP M G
Sbjct: 10 VMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGG 66
>pdb|3CNB|A Chain A, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|B Chain B, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|C Chain C, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
Length = 143
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 26/140 (18%)
Query: 862 ILLVEDNKINVMVAKSMMKQLG--HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGL 919
IL++ED+K + ++ L I + N +A + D++++D+ M MDG
Sbjct: 11 ILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGF 70
Query: 920 KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG 979
I+S T N I +IAMT ++ A G
Sbjct: 71 SICHRIKSTPATAN------------------------IIVIAMTGALTDDNVSRIVALG 106
Query: 980 MDSFVSKPVTFQKLKECLEQ 999
++ KP+ F L++ ++Q
Sbjct: 107 AETCFGKPLNFTLLEKTIKQ 126
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator Spo0a
Length = 130
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 27/117 (23%)
Query: 886 IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRS-FEDTGNWDAAAEAGIEQ 944
I NG + + ++ + D++L+D+ MP +DGL IR+ FE N
Sbjct: 31 IGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPN----------- 79
Query: 945 AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001
+I +TA + ++ G F+ KP + L + Q +
Sbjct: 80 ---------------VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVY 121
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 36/65 (55%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+V+D++ + ++K+ +++ +NG +A + ++ +D+ MP +DGL
Sbjct: 9 ILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDV 68
Query: 922 TRLIR 926
R +R
Sbjct: 69 IRSLR 73
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 26/98 (26%)
Query: 891 NGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950
NG++ + + + DL++ D+ P +DGL+ R IR A+E
Sbjct: 37 NGLQGLQIFESEQPDLVICDLRXPQIDGLELIRRIRQ--------TASET---------- 78
Query: 951 SSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
PII ++ + A E G ++ KP+
Sbjct: 79 --------PIIVLSGAGVXSDAVEALRLGAADYLIKPL 108
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL+VED + KS+ + G+ + +G E + + +L++ D+ +P +GL
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILSEYDINLVIXDINLPGKNGLLL 65
Query: 922 TRLIR 926
R +R
Sbjct: 66 ARELR 70
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 29/143 (20%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSI-DVVNNGVEAV--HAVQCQNYDLILMDVCMPVMDG 918
+L+V+D+ V + G +I D +G EAV + N D++ + + MP MDG
Sbjct: 39 VLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDG 98
Query: 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN 978
+ I F+ K +I ++A + ++C
Sbjct: 99 ITCLSNIMEFD--------------------------KNARVIMISALGKEQLVKDCLIK 132
Query: 979 GMDSFVSKPVTFQKLKECLEQYF 1001
G +F+ KP+ K+ + + F
Sbjct: 133 GAKTFIVKPLDRAKVLQRVMSVF 155
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 33/79 (41%)
Query: 849 AEVPETXXXXXXXILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLIL 908
A P +L+V+D V + +K G + NG +A+ + D ++
Sbjct: 13 AGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVI 72
Query: 909 MDVCMPVMDGLKATRLIRS 927
+DV P DG R +R+
Sbjct: 73 LDVXXPGXDGFGVLRRLRA 91
>pdb|3CG0|A Chain A, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|B Chain B, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|C Chain C, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|D Chain D, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
Length = 140
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSI-DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLK 920
+L+VED ++ + ++ LG+ + V +NG EAV D+ L+D+ +
Sbjct: 12 VLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIML------- 64
Query: 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGM 980
A G+E A + N +PII +T++ E+ +
Sbjct: 65 ---------------CGALDGVETAARLAAGCN----LPIIFITSSQDVETFQRAKRVNP 105
Query: 981 DSFVSKPVTFQKLKECLE 998
+++KPV L +E
Sbjct: 106 FGYLAKPVAADTLHRSIE 123
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 26/98 (26%)
Query: 891 NGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950
NG++ + + + DL++ D+ P +DGL+ R IR A+E
Sbjct: 37 NGLQGLQIFESEQPDLVICDLRXPQIDGLELIRRIRQ--------TASET---------- 78
Query: 951 SSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV 988
PII ++ + A E G ++ KP+
Sbjct: 79 --------PIIVLSGAGVMSDAVEALRLGAADYLIKPL 108
>pdb|3KY7|A Chain A, 2.35 Angstrom Resolution Crystal Structure Of A Putative
Trna (Guanine-7-)-Methyltransferase (Trmd) From
Staphylococcus Aureus Subsp. Aureus Mrsa252
Length = 269
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 689 VTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNR 748
VTD+++ G + T G L + T +L+P +G +H+ + FS+ FP R
Sbjct: 149 VTDEISMGDYVL---TGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTR 205
Query: 749 QKE 751
+E
Sbjct: 206 PRE 208
>pdb|3T95|A Chain A, Crystal Structure Of Lsrb From Yersinia Pestis Complexed
With Autoinducer-2
Length = 335
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 864 LVEDNKINVMVAKSMMKQ----LGHSIDVVNNGVEAVHAVQCQNYD 905
+V KI+V VA M+K+ +G ID+ N GV V + Q YD
Sbjct: 263 VVNQGKISVYVANEMLKKGDLNVGDKIDIPNIGVVEVSPNRVQGYD 308
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
+L+VED + ++++ G VV +G A+ D++L+D+ +P M G
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 66
Query: 922 TRLIRS 927
+ +R+
Sbjct: 67 CKQLRA 72
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKA 921
IL++ED+ V + + G+ +D ++ + + + DLIL+D+ +P DG
Sbjct: 40 ILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGLIKAREDHPDLILLDLGLPDFDGGDV 99
Query: 922 TRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMD 981
+ +R ++A +PII +TA E G D
Sbjct: 100 VQRLRK-------NSA--------------------LPIIVLTARDTVEEKVRLLGLGAD 132
Query: 982 SFVSKP 987
++ KP
Sbjct: 133 DYLIKP 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,922,570
Number of Sequences: 62578
Number of extensions: 1074608
Number of successful extensions: 3083
Number of sequences better than 100.0: 144
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2856
Number of HSP's gapped (non-prelim): 175
length of query: 1002
length of database: 14,973,337
effective HSP length: 108
effective length of query: 894
effective length of database: 8,214,913
effective search space: 7344132222
effective search space used: 7344132222
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 56 (26.2 bits)