Query 039716
Match_columns 1002
No_of_seqs 739 out of 5293
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 12:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11091 aerobic respiration c 100.0 3.6E-65 7.9E-70 642.0 64.7 504 201-1001 134-643 (779)
2 PRK10841 hybrid sensory kinase 100.0 1.7E-57 3.6E-62 575.0 61.6 595 208-1001 320-917 (924)
3 PRK09959 hybrid sensory histid 100.0 8.9E-52 1.9E-56 543.5 60.5 502 211-1000 565-1073(1197)
4 PRK11107 hybrid sensory histid 100.0 2E-52 4.2E-57 536.3 51.7 493 364-1001 286-785 (919)
5 TIGR02956 TMAO_torS TMAO reduc 100.0 1.4E-52 3E-57 540.4 50.3 362 365-1001 458-821 (968)
6 PRK15347 two component system 100.0 2.3E-51 4.9E-56 526.6 52.6 410 371-1000 399-809 (921)
7 PRK11466 hybrid sensory histid 100.0 1E-50 2.3E-55 519.9 50.1 350 371-1001 445-798 (914)
8 PRK13557 histidine kinase; Pro 100.0 6.6E-47 1.4E-51 455.7 55.0 493 219-1001 27-533 (540)
9 COG5002 VicK Signal transducti 100.0 8.7E-48 1.9E-52 406.0 32.2 345 209-668 98-451 (459)
10 PRK10618 phosphotransfer inter 100.0 3.4E-46 7.4E-51 465.6 52.1 343 208-666 329-673 (894)
11 PRK13837 two-component VirA-li 100.0 1E-43 2.3E-48 448.5 59.3 365 364-1001 444-812 (828)
12 KOG0519 Sensory transduction h 100.0 6.9E-44 1.5E-48 439.6 18.6 534 373-1001 224-784 (786)
13 COG2205 KdpD Osmosensitive K+ 100.0 1.3E-37 2.7E-42 362.3 42.5 218 371-668 661-882 (890)
14 PRK11006 phoR phosphate regulo 100.0 2.2E-38 4.8E-43 372.2 36.0 330 215-667 91-425 (430)
15 TIGR02938 nifL_nitrog nitrogen 100.0 5.8E-38 1.3E-42 372.7 39.4 360 222-665 4-494 (494)
16 COG3852 NtrB Signal transducti 100.0 1.7E-35 3.8E-40 309.7 28.8 337 226-667 11-356 (363)
17 TIGR02966 phoR_proteo phosphat 100.0 3E-34 6.5E-39 322.9 35.4 324 219-663 3-333 (333)
18 PRK11073 glnL nitrogen regulat 100.0 2.2E-34 4.8E-39 328.2 34.3 335 222-665 7-347 (348)
19 PRK09303 adaptive-response sen 100.0 1.2E-34 2.5E-39 334.8 31.3 220 369-666 150-378 (380)
20 PRK11360 sensory histidine kin 100.0 1.2E-32 2.5E-37 335.3 41.6 346 211-666 251-602 (607)
21 PRK13560 hypothetical protein; 100.0 2.3E-32 5.1E-37 345.4 37.6 355 210-666 320-804 (807)
22 COG5000 NtrY Signal transducti 100.0 1.3E-31 2.8E-36 302.2 32.3 350 190-665 338-708 (712)
23 PRK10490 sensor protein KdpD; 100.0 1.7E-30 3.6E-35 328.1 41.4 216 371-667 665-884 (895)
24 COG4251 Bacteriophytochrome (l 100.0 4.9E-30 1.1E-34 290.0 26.3 217 369-667 523-743 (750)
25 PRK10604 sensor protein RstB; 100.0 3.3E-29 7.2E-34 294.6 29.5 213 370-667 212-425 (433)
26 PRK11086 sensory histidine kin 100.0 3.9E-28 8.5E-33 293.2 32.7 306 221-666 220-536 (542)
27 PRK10815 sensor protein PhoQ; 100.0 2.4E-28 5.1E-33 290.6 28.6 213 369-666 265-479 (485)
28 COG4191 Signal transduction hi 100.0 3.1E-28 6.6E-33 277.0 28.0 211 370-665 384-601 (603)
29 PRK10364 sensor protein ZraS; 100.0 1.4E-27 3E-32 282.9 33.4 216 364-666 231-449 (457)
30 PRK13559 hypothetical protein; 100.0 1.9E-27 4.2E-32 272.8 30.6 308 220-666 41-360 (361)
31 PRK10549 signal transduction h 100.0 1.7E-27 3.6E-32 282.5 29.1 218 371-667 241-460 (466)
32 PRK10755 sensor protein BasS/P 100.0 1.9E-27 4.2E-32 272.3 26.9 210 371-666 138-351 (356)
33 PRK15053 dpiB sensor histidine 100.0 2.1E-26 4.6E-31 278.8 34.6 308 222-666 222-540 (545)
34 TIGR03785 marine_sort_HK prote 100.0 5.8E-27 1.3E-31 289.5 29.5 216 370-664 485-703 (703)
35 TIGR01386 cztS_silS_copS heavy 100.0 1.9E-26 4.2E-31 272.1 28.8 215 369-664 240-457 (457)
36 PRK09835 sensor kinase CusS; P 100.0 1.5E-26 3.3E-31 275.3 28.0 216 370-665 262-480 (482)
37 PRK09470 cpxA two-component se 99.9 5.1E-26 1.1E-30 269.2 29.9 215 370-666 243-458 (461)
38 PRK10337 sensor protein QseC; 99.9 2.8E-26 6.1E-31 270.9 26.1 212 368-663 235-449 (449)
39 PRK09467 envZ osmolarity senso 99.9 8.1E-26 1.8E-30 265.8 28.0 205 371-666 230-434 (435)
40 PRK11100 sensory histidine kin 99.9 3.6E-25 7.8E-30 262.5 29.6 217 370-666 256-474 (475)
41 COG0642 BaeS Signal transducti 99.9 1.9E-25 4.1E-30 249.0 25.2 215 370-667 115-331 (336)
42 TIGR02916 PEP_his_kin putative 99.9 5.3E-25 1.2E-29 272.9 30.6 261 309-664 413-679 (679)
43 COG3290 CitA Signal transducti 99.9 4.9E-20 1.1E-24 209.5 37.0 317 209-667 206-533 (537)
44 PRK11644 sensory histidine kin 99.9 7.6E-21 1.6E-25 226.5 27.9 190 371-665 303-494 (495)
45 COG4192 Signal transduction hi 99.9 1.4E-20 3E-25 205.7 24.5 211 371-665 452-666 (673)
46 COG0745 OmpR Response regulato 99.8 4.1E-20 8.9E-25 197.2 16.6 116 860-1001 1-116 (229)
47 PF02518 HATPase_c: Histidine 99.8 9.3E-20 2E-24 172.8 11.2 109 480-665 1-110 (111)
48 PRK10935 nitrate/nitrite senso 99.8 1.4E-16 3E-21 194.0 38.4 193 372-666 362-560 (565)
49 PRK10600 nitrate/nitrite senso 99.7 6.8E-16 1.5E-20 188.1 32.2 183 381-666 373-557 (569)
50 COG3437 Response regulator con 99.7 2.8E-17 6.1E-22 178.5 13.3 119 857-998 12-130 (360)
51 COG2204 AtoC Response regulato 99.7 6.9E-17 1.5E-21 184.9 15.9 116 860-1001 5-120 (464)
52 PF00072 Response_reg: Respons 99.7 1.1E-16 2.3E-21 151.3 14.6 111 862-998 1-112 (112)
53 COG4753 Response regulator con 99.7 3.7E-17 7.9E-22 186.6 13.4 115 860-1000 2-119 (475)
54 COG0784 CheY FOG: CheY-like re 99.7 3.8E-16 8.2E-21 151.5 16.4 118 858-1001 4-124 (130)
55 COG4565 CitB Response regulato 99.7 3E-16 6.5E-21 158.8 13.9 115 861-1001 2-118 (224)
56 COG4566 TtrR Response regulato 99.6 1.8E-15 3.9E-20 150.3 13.0 117 859-1001 4-120 (202)
57 COG2197 CitB Response regulato 99.6 6.2E-15 1.3E-19 156.0 16.0 115 861-1001 2-118 (211)
58 PLN03029 type-a response regul 99.6 6.2E-15 1.3E-19 157.6 16.0 119 858-1000 7-145 (222)
59 COG3706 PleD Response regulato 99.6 7.3E-15 1.6E-19 167.1 15.2 119 858-1000 131-249 (435)
60 PRK10547 chemotaxis protein Ch 99.6 2.2E-14 4.7E-19 173.5 18.7 77 591-668 429-526 (670)
61 PRK10046 dpiA two-component re 99.6 3.4E-14 7.3E-19 152.3 17.0 116 859-1000 4-121 (225)
62 COG3947 Response regulator con 99.6 9.7E-15 2.1E-19 153.0 10.2 114 860-1001 1-114 (361)
63 PRK11173 two-component respons 99.5 1.2E-13 2.7E-18 148.6 17.0 114 860-1000 4-117 (237)
64 PRK10529 DNA-binding transcrip 99.5 1.4E-13 2.9E-18 146.6 17.0 115 860-1001 2-116 (225)
65 PRK10816 DNA-binding transcrip 99.5 1.5E-13 3.2E-18 146.3 16.7 115 861-1001 2-116 (223)
66 PRK09836 DNA-binding transcrip 99.5 2.2E-13 4.8E-18 145.4 16.9 114 861-1000 2-115 (227)
67 PRK04184 DNA topoisomerase VI 99.5 5.1E-14 1.1E-18 164.6 12.4 77 591-667 74-154 (535)
68 PRK09468 ompR osmolarity respo 99.5 3.4E-13 7.4E-18 145.2 17.2 117 859-1001 5-121 (239)
69 PRK10643 DNA-binding transcrip 99.5 3.6E-13 7.9E-18 142.5 16.9 114 861-1000 2-115 (222)
70 PRK10766 DNA-binding transcrip 99.5 3.4E-13 7.3E-18 143.2 16.6 114 860-1000 3-116 (221)
71 PRK10430 DNA-binding transcrip 99.5 4.4E-13 9.6E-18 145.0 16.3 115 860-1000 2-120 (239)
72 PRK10336 DNA-binding transcrip 99.5 5.7E-13 1.2E-17 140.8 16.6 114 861-1000 2-115 (219)
73 TIGR02154 PhoB phosphate regul 99.5 6.9E-13 1.5E-17 140.6 16.9 117 860-1000 3-119 (226)
74 PRK10701 DNA-binding transcrip 99.5 6.1E-13 1.3E-17 143.4 16.6 113 861-1000 3-115 (240)
75 PRK10161 transcriptional regul 99.5 6.9E-13 1.5E-17 141.7 16.8 117 860-1000 3-119 (229)
76 TIGR02875 spore_0_A sporulatio 99.5 6.3E-13 1.4E-17 145.8 16.4 119 859-1001 2-122 (262)
77 PRK13856 two-component respons 99.5 6.7E-13 1.5E-17 143.4 16.4 113 861-1000 3-116 (241)
78 TIGR03787 marine_sort_RR prote 99.5 1E-12 2.2E-17 140.1 16.7 114 861-1000 2-117 (227)
79 PRK10955 DNA-binding transcrip 99.5 9.3E-13 2E-17 140.6 16.3 112 861-1000 3-114 (232)
80 PRK11517 transcriptional regul 99.5 1.3E-12 2.9E-17 138.5 16.9 113 861-1000 2-114 (223)
81 smart00387 HATPase_c Histidine 99.4 1.2E-12 2.6E-17 121.7 13.7 109 480-665 1-110 (111)
82 PRK11083 DNA-binding response 99.4 1.8E-12 3.9E-17 137.7 16.7 115 860-1000 4-118 (228)
83 PRK10840 transcriptional regul 99.4 1.7E-12 3.7E-17 138.1 15.8 115 860-1000 4-123 (216)
84 COG4567 Response regulator con 99.4 1.1E-12 2.4E-17 125.0 12.5 113 861-999 11-123 (182)
85 TIGR01387 cztR_silR_copR heavy 99.4 2.2E-12 4.9E-17 136.0 16.2 113 862-1000 1-113 (218)
86 PRK14084 two-component respons 99.4 2.5E-12 5.3E-17 139.6 16.2 113 860-1000 1-115 (246)
87 CHL00148 orf27 Ycf27; Reviewed 99.4 4E-12 8.6E-17 136.5 17.3 115 859-1000 6-120 (240)
88 PRK09958 DNA-binding transcrip 99.4 3.1E-12 6.7E-17 133.9 16.0 114 861-1000 2-116 (204)
89 PRK10923 glnG nitrogen regulat 99.4 2.5E-12 5.3E-17 153.3 16.8 115 860-1000 4-118 (469)
90 PRK15115 response regulator Gl 99.4 2.5E-12 5.5E-17 152.1 15.7 116 859-1000 5-120 (444)
91 PRK11361 acetoacetate metaboli 99.4 4.4E-12 9.6E-17 150.6 17.1 117 859-1001 4-120 (457)
92 PRK09581 pleD response regulat 99.4 1.5E-12 3.3E-17 153.6 12.7 117 858-999 154-270 (457)
93 PRK09483 response regulator; P 99.4 6.4E-12 1.4E-16 132.8 15.9 116 860-1001 2-119 (217)
94 PRK10365 transcriptional regul 99.4 2.8E-12 6.1E-17 151.6 14.4 116 859-1000 5-120 (441)
95 PRK10360 DNA-binding transcrip 99.4 7.2E-12 1.6E-16 130.2 15.7 113 860-1001 2-116 (196)
96 TIGR02915 PEP_resp_reg putativ 99.4 3.9E-12 8.5E-17 150.5 15.3 111 862-1000 1-116 (445)
97 PRK11697 putative two-componen 99.4 6E-12 1.3E-16 135.7 15.2 112 860-1000 2-115 (238)
98 PRK09935 transcriptional regul 99.4 1.1E-11 2.4E-16 130.0 16.4 115 860-1000 4-120 (210)
99 TIGR01818 ntrC nitrogen regula 99.4 5.7E-12 1.2E-16 149.9 15.2 113 862-1000 1-113 (463)
100 PRK12555 chemotaxis-specific m 99.4 7.3E-12 1.6E-16 142.7 15.2 112 861-999 2-126 (337)
101 PRK10710 DNA-binding transcrip 99.4 2.1E-11 4.6E-16 130.9 17.7 115 859-1000 10-124 (240)
102 PRK15479 transcriptional regul 99.3 3E-11 6.4E-16 127.8 16.5 114 861-1000 2-115 (221)
103 COG2201 CheB Chemotaxis respon 99.3 1.1E-11 2.4E-16 137.1 12.7 103 860-989 2-108 (350)
104 PRK09390 fixJ response regulat 99.3 2.1E-11 4.6E-16 126.2 13.9 115 859-999 3-117 (202)
105 PRK14868 DNA topoisomerase VI 99.3 1.3E-11 2.7E-16 147.0 13.5 74 591-665 81-159 (795)
106 TIGR01052 top6b DNA topoisomer 99.3 1.3E-11 2.9E-16 143.1 12.1 68 591-659 64-134 (488)
107 PF00512 HisKA: His Kinase A ( 99.3 1.4E-11 3E-16 106.0 8.7 64 371-434 3-68 (68)
108 PRK00742 chemotaxis-specific m 99.3 4.7E-11 1E-15 137.0 15.8 104 859-989 3-110 (354)
109 PRK09581 pleD response regulat 99.3 7E-11 1.5E-15 139.6 16.9 117 860-1000 3-119 (457)
110 PRK14867 DNA topoisomerase VI 99.3 2.5E-11 5.4E-16 144.7 12.5 77 591-667 72-151 (659)
111 PRK10100 DNA-binding transcrip 99.3 5.3E-11 1.2E-15 126.4 13.7 112 858-1000 9-124 (216)
112 cd00075 HATPase_c Histidine ki 99.2 6.3E-11 1.4E-15 108.3 11.8 71 591-663 33-103 (103)
113 COG3707 AmiR Response regulato 99.2 4.2E-11 9.1E-16 120.4 11.2 113 859-998 5-118 (194)
114 PRK13558 bacterio-opsin activa 99.2 5.5E-11 1.2E-15 148.0 14.9 114 859-998 7-122 (665)
115 PRK11475 DNA-binding transcrip 99.2 6.9E-11 1.5E-15 124.7 13.0 103 872-1000 3-112 (207)
116 PRK10610 chemotaxis regulatory 99.2 3.9E-10 8.5E-15 106.5 16.8 118 859-1000 5-123 (129)
117 PRK13435 response regulator; P 99.2 1.6E-10 3.4E-15 114.6 14.5 112 859-1000 5-118 (145)
118 TIGR01925 spIIAB anti-sigma F 99.2 1E-10 2.2E-15 115.3 12.5 63 591-663 74-136 (137)
119 PRK15369 two component system 99.2 3.2E-10 7E-15 118.0 15.9 116 859-1000 3-120 (211)
120 PRK10403 transcriptional regul 99.2 3.5E-10 7.6E-15 118.6 15.9 115 860-1000 7-123 (215)
121 PRK10651 transcriptional regul 99.2 4.2E-10 9.1E-15 118.2 16.2 117 859-1001 6-124 (216)
122 PRK15411 rcsA colanic acid cap 99.2 3.3E-10 7.2E-15 119.8 13.9 113 861-1000 2-120 (207)
123 PRK03660 anti-sigma F factor; 99.1 4.9E-10 1.1E-14 111.6 12.9 67 591-667 74-140 (146)
124 PRK09191 two-component respons 99.1 7.7E-10 1.7E-14 121.0 15.2 113 859-1000 137-251 (261)
125 COG0643 CheA Chemotaxis protei 99.1 1E-09 2.3E-14 133.7 15.8 77 591-668 476-576 (716)
126 PRK10693 response regulator of 99.1 6.5E-10 1.4E-14 124.7 12.3 87 888-1000 2-89 (303)
127 cd00156 REC Signal receiver do 99.0 3.2E-09 7E-14 95.9 13.2 112 863-1000 1-112 (113)
128 COG3920 Signal transduction hi 98.9 2.2E-07 4.8E-12 98.9 22.8 190 372-667 21-217 (221)
129 COG3850 NarQ Signal transducti 98.9 2.9E-06 6.3E-11 97.2 32.6 187 375-665 374-568 (574)
130 COG3851 UhpB Signal transducti 98.9 5.8E-07 1.3E-11 97.6 24.6 218 340-665 274-494 (497)
131 PF08448 PAS_4: PAS fold; Int 98.9 6.1E-09 1.3E-13 97.0 8.6 107 228-335 1-110 (110)
132 COG3275 LytS Putative regulato 98.8 7.2E-07 1.6E-11 100.5 24.4 59 592-668 493-554 (557)
133 COG4585 Signal transduction hi 98.8 5.3E-07 1.1E-11 104.1 24.2 90 481-665 276-365 (365)
134 PRK04069 serine-protein kinase 98.8 3.6E-08 7.9E-13 100.0 12.3 69 591-667 77-145 (161)
135 PRK15029 arginine decarboxylas 98.8 3.9E-08 8.5E-13 120.6 12.6 105 861-992 2-121 (755)
136 COG3279 LytT Response regulato 98.7 4.1E-08 8.8E-13 106.4 10.6 113 860-1000 2-116 (244)
137 COG2972 Predicted signal trans 98.7 2E-06 4.3E-11 102.2 22.6 65 591-666 386-453 (456)
138 PF13426 PAS_9: PAS domain; PD 98.6 2.8E-07 6.1E-12 84.7 9.6 101 232-332 1-104 (104)
139 TIGR01924 rsbW_low_gc serine-p 98.6 5.6E-07 1.2E-11 91.1 12.4 69 591-667 77-145 (159)
140 smart00388 HisKA His Kinase A 98.5 3.8E-07 8.2E-12 76.4 8.4 63 371-433 3-65 (66)
141 PF00989 PAS: PAS fold; Inter 98.5 7.2E-07 1.6E-11 83.4 10.6 109 222-330 1-113 (113)
142 COG4564 Signal transduction hi 98.5 0.00031 6.7E-09 76.0 31.0 305 257-667 113-449 (459)
143 PRK13560 hypothetical protein; 98.3 5.5E-06 1.2E-10 105.4 15.6 134 209-342 191-329 (807)
144 PF14501 HATPase_c_5: GHKL dom 98.3 8.4E-06 1.8E-10 75.8 12.0 61 591-664 40-100 (100)
145 KOG0787 Dehydrogenase kinase [ 98.3 4.2E-05 9E-10 84.3 17.9 74 592-665 301-380 (414)
146 PRK11107 hybrid sensory histid 98.2 1.6E-05 3.5E-10 102.9 15.7 115 857-999 534-648 (919)
147 COG3706 PleD Response regulato 98.1 2.6E-06 5.7E-11 97.9 5.7 89 884-1000 13-101 (435)
148 PF13596 PAS_10: PAS domain; P 98.1 4.1E-05 8.9E-10 71.8 12.3 103 224-331 1-106 (106)
149 cd00082 HisKA Histidine Kinase 98.0 1.8E-05 3.9E-10 65.5 8.0 60 371-430 5-65 (65)
150 TIGR00585 mutl DNA mismatch re 98.0 2.3E-05 5E-10 88.4 10.9 66 592-662 52-125 (312)
151 PRK09776 putative diguanylate 97.9 7.8E-05 1.7E-09 98.5 12.9 135 210-344 271-409 (1092)
152 COG1389 DNA topoisomerase VI, 97.8 0.00013 2.7E-09 82.3 10.7 77 591-667 72-152 (538)
153 PRK13558 bacterio-opsin activa 97.8 0.00032 7E-09 87.6 15.9 121 222-342 148-274 (665)
154 PRK09776 putative diguanylate 97.7 0.00027 5.9E-09 93.4 14.9 127 209-336 523-657 (1092)
155 TIGR00229 sensory_box PAS doma 97.7 0.00029 6.4E-09 62.8 9.8 115 222-337 3-121 (124)
156 PF13581 HATPase_c_2: Histidin 97.6 0.00029 6.2E-09 68.1 9.6 59 591-662 66-124 (125)
157 PRK10060 RNase II stability mo 97.5 0.00091 2E-08 83.5 14.6 122 220-342 109-235 (663)
158 TIGR02938 nifL_nitrog nitrogen 97.4 0.0029 6.4E-08 75.2 16.7 39 216-254 124-162 (494)
159 PRK11359 cyclic-di-GMP phospho 97.4 0.0014 3.1E-08 83.6 14.0 114 224-337 138-255 (799)
160 smart00448 REC cheY-homologous 97.2 0.0023 5.1E-08 48.9 8.0 54 861-914 2-55 (55)
161 TIGR02040 PpsR-CrtJ transcript 97.1 0.0069 1.5E-07 71.8 14.7 117 214-335 125-245 (442)
162 PF06490 FleQ: Flagellar regul 96.9 0.0061 1.3E-07 57.6 10.0 106 861-1000 1-107 (109)
163 COG2172 RsbW Anti-sigma regula 96.9 0.0072 1.6E-07 60.2 10.7 56 591-656 76-131 (146)
164 TIGR02040 PpsR-CrtJ transcript 96.8 0.012 2.7E-07 69.7 13.4 110 228-340 2-114 (442)
165 PRK00095 mutL DNA mismatch rep 96.6 0.0061 1.3E-07 75.1 9.7 48 592-639 52-105 (617)
166 cd00130 PAS PAS domain; PAS mo 96.6 0.017 3.7E-07 48.4 9.9 100 231-330 1-103 (103)
167 PF12860 PAS_7: PAS fold 96.0 0.015 3.3E-07 55.0 6.8 104 228-337 1-114 (115)
168 KOG0519 Sensory transduction h 96.0 0.011 2.4E-07 74.6 7.4 227 372-650 388-619 (786)
169 PF13589 HATPase_c_3: Histidin 95.8 0.0051 1.1E-07 60.7 2.5 67 593-664 35-106 (137)
170 cd02071 MM_CoA_mut_B12_BD meth 95.6 0.33 7.1E-06 46.8 14.0 111 862-998 2-121 (122)
171 PRK02261 methylaspartate mutas 95.6 0.48 1E-05 46.7 15.2 117 859-1001 3-134 (137)
172 COG3829 RocR Transcriptional r 95.3 0.093 2E-06 61.7 10.7 110 218-336 113-225 (560)
173 PRK11359 cyclic-di-GMP phospho 95.3 0.065 1.4E-06 68.4 10.3 116 221-338 11-133 (799)
174 PRK10820 DNA-binding transcrip 95.3 0.098 2.1E-06 63.4 11.2 106 217-332 75-187 (520)
175 PRK14083 HSP90 family protein; 94.7 0.019 4.1E-07 69.9 2.9 48 593-640 64-118 (601)
176 PTZ00272 heat shock protein 83 94.0 0.058 1.3E-06 66.6 4.9 20 593-612 73-92 (701)
177 cd02067 B12-binding B12 bindin 93.9 0.8 1.7E-05 43.7 11.8 94 866-986 10-109 (119)
178 TIGR00640 acid_CoA_mut_C methy 93.7 2.4 5.2E-05 41.6 14.6 114 860-999 3-125 (132)
179 PF08447 PAS_3: PAS fold; Int 93.6 0.18 3.9E-06 45.0 6.3 75 251-326 11-90 (91)
180 PRK05559 DNA topoisomerase IV 93.1 0.18 3.8E-06 62.3 7.1 49 593-641 70-130 (631)
181 PRK05218 heat shock protein 90 92.8 0.23 4.9E-06 61.2 7.5 47 594-640 75-133 (613)
182 PF14598 PAS_11: PAS domain; P 92.2 1 2.2E-05 42.6 9.6 94 235-328 5-104 (111)
183 TIGR01501 MthylAspMutase methy 92.2 4.5 9.8E-05 39.7 14.1 108 868-1001 14-132 (134)
184 COG2202 AtoS FOG: PAS/PAC doma 90.9 3.5 7.5E-05 40.0 12.4 122 213-335 103-230 (232)
185 TIGR01055 parE_Gneg DNA topois 89.7 0.41 8.9E-06 59.0 5.3 49 594-642 64-124 (625)
186 PTZ00130 heat shock protein 90 89.2 0.46 1E-05 59.2 5.1 48 593-640 136-194 (814)
187 COG0323 MutL DNA mismatch repa 88.9 0.45 9.8E-06 58.8 4.8 27 593-619 54-80 (638)
188 PF02310 B12-binding: B12 bind 88.4 3.3 7.1E-05 39.3 9.6 93 868-987 13-112 (121)
189 cd02070 corrinoid_protein_B12- 88.2 7.2 0.00016 41.0 12.8 100 859-985 82-190 (201)
190 cd02072 Glm_B12_BD B12 binding 88.1 13 0.00029 36.1 13.3 105 868-998 12-127 (128)
191 TIGR01059 gyrB DNA gyrase, B s 88.1 0.76 1.7E-05 57.2 6.1 29 481-509 27-58 (654)
192 cd02069 methionine_synthase_B1 87.9 5.4 0.00012 42.5 11.6 103 859-987 88-202 (213)
193 COG2461 Uncharacterized conser 87.0 2.2 4.7E-05 48.4 8.2 108 222-334 290-399 (409)
194 COG2185 Sbm Methylmalonyl-CoA 86.1 18 0.00038 35.8 13.0 117 858-998 11-134 (143)
195 PRK05644 gyrB DNA gyrase subun 85.8 1.4 3E-05 54.6 6.6 29 481-509 34-65 (638)
196 COG5381 Uncharacterized protei 85.5 2.2 4.8E-05 41.6 6.2 26 486-511 65-90 (184)
197 PF13188 PAS_8: PAS domain; PD 84.4 0.53 1.1E-05 39.3 1.5 48 222-270 1-48 (64)
198 COG4999 Uncharacterized domain 83.2 4.2 9.2E-05 38.4 6.8 111 857-997 9-121 (140)
199 COG0326 HtpG Molecular chapero 83.0 2.1 4.6E-05 51.8 6.2 49 593-641 75-134 (623)
200 PF03709 OKR_DC_1_N: Orn/Lys/A 82.9 3.2 6.9E-05 39.6 6.3 91 873-990 7-100 (115)
201 cd04728 ThiG Thiazole synthase 82.0 10 0.00022 40.9 10.1 87 866-985 107-203 (248)
202 smart00433 TOP2c Topoisomerase 81.0 2.4 5.1E-05 52.3 5.8 48 593-640 34-93 (594)
203 PRK09426 methylmalonyl-CoA mut 80.8 19 0.00042 45.3 13.7 117 859-1001 582-707 (714)
204 TIGR03815 CpaE_hom_Actino heli 80.5 4.8 0.0001 45.6 7.8 84 883-1000 1-85 (322)
205 TIGR02370 pyl_corrinoid methyl 79.0 26 0.00057 36.7 12.2 99 860-985 85-192 (197)
206 PRK00208 thiG thiazole synthas 77.6 23 0.0005 38.3 11.1 82 870-985 111-203 (250)
207 COG5385 Uncharacterized protei 75.4 96 0.0021 31.3 18.2 121 373-509 18-139 (214)
208 KOG3558 Hypoxia-inducible fact 73.9 4.4 9.6E-05 48.9 5.1 95 236-330 278-379 (768)
209 PF07310 PAS_5: PAS domain; I 72.8 9.5 0.00021 37.5 6.5 86 241-326 50-135 (137)
210 PRK11388 DNA-binding transcrip 70.9 31 0.00067 43.1 12.0 99 223-331 204-307 (638)
211 PRK15399 lysine decarboxylase 70.6 19 0.00042 45.0 9.8 96 861-985 2-104 (713)
212 PRK15400 lysine decarboxylase 66.4 23 0.00051 44.3 9.3 81 861-970 2-89 (714)
213 KOG0501 K+-channel KCNQ [Inorg 66.3 20 0.00044 42.6 8.0 94 241-334 39-137 (971)
214 TIGR00007 phosphoribosylformim 64.7 69 0.0015 34.2 11.7 68 891-985 146-217 (230)
215 PRK01130 N-acetylmannosamine-6 63.8 73 0.0016 33.9 11.6 82 876-985 111-201 (221)
216 cd02068 radical_SAM_B12_BD B12 62.8 34 0.00075 32.8 8.1 58 870-927 3-64 (127)
217 COG0512 PabA Anthranilate/para 61.4 13 0.00029 38.4 5.0 53 860-912 2-54 (191)
218 cd04723 HisA_HisF Phosphoribos 60.6 64 0.0014 34.8 10.5 67 891-985 147-217 (233)
219 PRK00043 thiE thiamine-phospha 60.5 99 0.0021 32.3 11.8 76 882-985 103-187 (212)
220 cd04724 Tryptophan_synthase_al 59.2 70 0.0015 34.7 10.5 42 957-998 76-123 (242)
221 PRK13125 trpA tryptophan synth 58.8 1E+02 0.0023 33.4 11.8 90 871-987 117-215 (244)
222 KOG1977 DNA mismatch repair pr 58.1 14 0.00031 44.8 5.1 28 592-619 50-77 (1142)
223 cd02065 B12-binding_like B12 b 57.6 55 0.0012 30.9 8.5 62 866-927 10-75 (125)
224 PRK00278 trpC indole-3-glycero 56.4 1.8E+02 0.0038 32.0 13.2 96 863-985 139-239 (260)
225 smart00091 PAS PAS domain. PAS 56.3 17 0.00036 26.8 3.9 49 224-272 3-54 (67)
226 PRK12724 flagellar biosynthesi 56.2 1.2E+02 0.0025 35.9 12.0 105 859-984 252-365 (432)
227 cd00331 IGPS Indole-3-glycerol 55.3 1.7E+02 0.0037 30.9 12.6 79 880-985 118-200 (217)
228 COG4122 Predicted O-methyltran 55.1 33 0.00072 36.6 6.9 54 861-914 86-143 (219)
229 smart00086 PAC Motif C-termina 54.1 55 0.0012 21.2 6.0 28 305-332 15-42 (43)
230 PF03602 Cons_hypoth95: Conser 53.2 33 0.00071 35.6 6.4 65 860-926 66-138 (183)
231 cd04726 KGPDC_HPS 3-Keto-L-gul 53.2 1.8E+02 0.0039 30.1 12.2 85 872-985 92-185 (202)
232 PF02254 TrkA_N: TrkA-N domain 53.0 1.1E+02 0.0024 28.5 9.6 93 860-985 22-115 (116)
233 PRK13587 1-(5-phosphoribosyl)- 52.1 1E+02 0.0023 33.2 10.3 66 893-985 151-220 (234)
234 PHA02569 39 DNA topoisomerase 51.7 12 0.00026 46.1 3.4 50 594-643 81-144 (602)
235 PRK00811 spermidine synthase; 51.6 1.1E+02 0.0023 34.1 10.6 55 860-915 101-162 (283)
236 PRK13111 trpA tryptophan synth 51.3 40 0.00087 37.0 7.0 43 956-998 88-136 (258)
237 PF08348 PAS_6: YheO-like PAS 49.8 2.4E+02 0.0053 27.0 12.5 42 295-336 71-112 (118)
238 TIGR02373 photo_yellow photoac 49.7 1.1E+02 0.0023 29.7 8.6 42 228-269 22-66 (124)
239 PF12282 H_kinase_N: Signal tr 49.3 1.8E+02 0.0039 28.9 10.7 104 217-332 20-129 (145)
240 cd00452 KDPG_aldolase KDPG and 49.2 1.2E+02 0.0026 31.5 9.9 78 879-986 93-171 (190)
241 TIGR01037 pyrD_sub1_fam dihydr 49.1 1.4E+02 0.003 33.4 11.2 45 957-1001 234-284 (300)
242 TIGR00736 nifR3_rel_arch TIM-b 49.0 80 0.0017 34.1 8.7 61 899-985 157-219 (231)
243 PRK14939 gyrB DNA gyrase subun 48.8 16 0.00035 46.0 3.9 29 475-503 25-56 (756)
244 COG3887 Predicted signaling pr 48.3 72 0.0016 38.7 8.7 50 218-267 71-120 (655)
245 PF14689 SPOB_a: Sensor_kinase 48.0 46 0.001 27.9 5.3 45 372-420 14-58 (62)
246 cd04729 NanE N-acetylmannosami 47.5 2.5E+02 0.0054 29.8 12.3 79 879-985 118-205 (219)
247 PF01596 Methyltransf_3: O-met 45.4 71 0.0015 33.8 7.5 54 859-912 70-130 (205)
248 KOG1979 DNA mismatch repair pr 45.2 33 0.00071 41.1 5.3 27 593-619 58-84 (694)
249 TIGR00735 hisF imidazoleglycer 45.1 1.9E+02 0.004 31.6 11.1 43 957-999 199-248 (254)
250 PRK00748 1-(5-phosphoribosyl)- 44.2 96 0.0021 33.1 8.6 68 891-985 147-219 (233)
251 PRK14974 cell division protein 43.8 2.1E+02 0.0046 32.7 11.6 67 859-927 168-246 (336)
252 cd04730 NPD_like 2-Nitropropan 43.2 2.8E+02 0.006 29.5 12.0 82 877-986 96-185 (236)
253 PRK07649 para-aminobenzoate/an 41.8 31 0.00068 36.1 4.2 48 862-909 2-49 (195)
254 TIGR01334 modD putative molybd 41.7 1.1E+02 0.0023 34.1 8.4 69 887-984 193-261 (277)
255 TIGR00262 trpA tryptophan synt 41.6 74 0.0016 34.9 7.3 44 956-999 86-135 (256)
256 TIGR00693 thiE thiamine-phosph 41.4 1.6E+02 0.0035 30.4 9.6 70 887-984 101-178 (196)
257 PRK05458 guanosine 5'-monophos 40.9 3.8E+02 0.0083 30.5 12.9 97 861-985 113-229 (326)
258 KOG1562 Spermidine synthase [A 40.6 87 0.0019 34.9 7.3 62 861-922 147-214 (337)
259 PF01408 GFO_IDH_MocA: Oxidore 40.3 3E+02 0.0065 25.5 10.5 41 958-998 65-107 (120)
260 cd04732 HisA HisA. Phosphorib 39.3 3.3E+02 0.0071 28.9 11.8 68 891-985 147-218 (234)
261 PRK07259 dihydroorotate dehydr 39.2 2.2E+02 0.0048 31.8 10.9 45 957-1001 234-284 (301)
262 PLN02823 spermine synthase 39.2 1.5E+02 0.0032 33.9 9.4 55 860-915 128-188 (336)
263 TIGR02855 spore_yabG sporulati 39.0 1.9E+02 0.0041 31.8 9.5 101 860-987 105-226 (283)
264 PRK10558 alpha-dehydro-beta-de 38.6 2.6E+02 0.0057 30.6 10.9 99 875-998 10-111 (256)
265 PLN02591 tryptophan synthase 38.5 85 0.0018 34.3 7.0 44 956-999 77-126 (250)
266 PRK10128 2-keto-3-deoxy-L-rham 38.5 2.9E+02 0.0064 30.5 11.3 99 875-998 9-110 (267)
267 PF08670 MEKHLA: MEKHLA domain 38.4 3.1E+02 0.0067 27.5 10.3 104 223-330 33-145 (148)
268 PRK07428 nicotinate-nucleotide 37.9 1.2E+02 0.0026 33.9 8.1 69 887-984 201-269 (288)
269 PF01729 QRPTase_C: Quinolinat 37.5 94 0.002 31.8 6.8 69 887-984 85-153 (169)
270 PF05582 Peptidase_U57: YabG p 37.4 3.4E+02 0.0073 30.1 11.1 101 860-987 106-227 (287)
271 cd00564 TMP_TenI Thiamine mono 37.2 2.2E+02 0.0047 29.0 9.8 67 890-985 103-177 (196)
272 TIGR03239 GarL 2-dehydro-3-deo 36.8 3.2E+02 0.007 29.8 11.2 99 875-998 3-104 (249)
273 PRK05458 guanosine 5'-monophos 36.4 99 0.0021 35.2 7.3 65 893-984 100-166 (326)
274 PF07568 HisKA_2: Histidine ki 36.2 2E+02 0.0044 25.1 7.8 72 377-457 2-73 (76)
275 PRK04128 1-(5-phosphoribosyl)- 36.1 2.6E+02 0.0057 30.0 10.3 83 890-1000 30-118 (228)
276 PRK08385 nicotinate-nucleotide 35.9 2.3E+02 0.0051 31.4 10.0 96 861-984 156-257 (278)
277 PRK06774 para-aminobenzoate sy 35.7 46 0.001 34.6 4.3 48 862-909 2-49 (191)
278 PRK07896 nicotinate-nucleotide 35.3 1.7E+02 0.0036 32.8 8.7 70 886-984 203-272 (289)
279 CHL00162 thiG thiamin biosynth 35.1 2E+02 0.0044 31.4 8.9 93 876-997 130-234 (267)
280 PF01564 Spermine_synth: Sperm 35.0 56 0.0012 35.6 5.0 68 860-927 101-179 (246)
281 PF10090 DUF2328: Uncharacteri 34.4 5.4E+02 0.012 26.6 17.2 109 386-509 2-111 (182)
282 PRK04302 triosephosphate isome 34.3 4.8E+02 0.011 27.7 12.0 30 956-985 172-201 (223)
283 PRK05848 nicotinate-nucleotide 34.0 3.6E+02 0.0078 29.9 11.1 69 887-984 187-255 (273)
284 TIGR02082 metH 5-methyltetrahy 33.8 3.1E+02 0.0068 36.9 12.3 101 859-985 732-844 (1178)
285 PRK09490 metH B12-dependent me 33.6 2.4E+02 0.0053 37.9 11.2 101 859-985 751-863 (1229)
286 KOG1978 DNA mismatch repair pr 33.3 50 0.0011 40.5 4.5 26 593-618 51-76 (672)
287 PLN03237 DNA topoisomerase 2; 33.2 69 0.0015 43.2 6.1 50 594-643 113-174 (1465)
288 PRK06543 nicotinate-nucleotide 33.2 3.7E+02 0.0081 29.9 11.0 66 887-984 198-263 (281)
289 PRK11889 flhF flagellar biosyn 32.8 3.8E+02 0.0082 31.6 11.2 53 859-911 269-328 (436)
290 COG3829 RocR Transcriptional r 32.2 1.2E+02 0.0027 36.5 7.4 97 227-334 6-105 (560)
291 PRK12726 flagellar biosynthesi 32.0 3.8E+02 0.0083 31.3 11.1 103 859-985 234-349 (407)
292 PRK02083 imidazole glycerol ph 31.8 4.1E+02 0.0088 28.8 11.1 79 893-999 156-246 (253)
293 TIGR03151 enACPred_II putative 31.5 3.7E+02 0.008 30.3 11.0 83 875-985 101-189 (307)
294 cd04722 TIM_phosphate_binding 31.1 3.1E+02 0.0066 27.5 9.7 60 899-985 132-198 (200)
295 PRK06731 flhF flagellar biosyn 31.0 5.6E+02 0.012 28.3 12.0 101 860-984 104-217 (270)
296 PRK11840 bifunctional sulfur c 30.6 3.7E+02 0.0081 30.5 10.4 91 865-985 180-277 (326)
297 TIGR00064 ftsY signal recognit 30.1 3.4E+02 0.0073 30.0 10.2 53 859-911 100-162 (272)
298 KOG1478 3-keto sterol reductas 30.1 57 0.0012 35.4 3.8 29 628-666 12-40 (341)
299 PRK05567 inosine 5'-monophosph 30.1 1.5E+02 0.0032 35.9 7.9 65 893-984 230-295 (486)
300 PRK08007 para-aminobenzoate sy 29.9 63 0.0014 33.5 4.1 49 862-910 2-50 (187)
301 cd04740 DHOD_1B_like Dihydroor 29.6 4.5E+02 0.0098 29.1 11.3 45 957-1001 231-281 (296)
302 TIGR01058 parE_Gpos DNA topois 29.6 50 0.0011 41.1 3.9 50 593-642 67-128 (637)
303 COG0157 NadC Nicotinate-nucleo 29.2 3.6E+02 0.0079 29.9 9.8 93 862-984 160-260 (280)
304 cd05212 NAD_bind_m-THF_DH_Cycl 29.1 1.7E+02 0.0038 28.9 6.9 54 857-915 26-83 (140)
305 PRK06096 molybdenum transport 29.0 2.2E+02 0.0048 31.7 8.4 70 886-984 193-262 (284)
306 PRK03562 glutathione-regulated 28.7 2.6E+02 0.0056 34.9 9.9 93 859-984 423-516 (621)
307 cd00429 RPE Ribulose-5-phospha 28.6 4.2E+02 0.0091 27.4 10.3 86 876-985 98-193 (211)
308 PF05690 ThiG: Thiazole biosyn 28.5 2.6E+02 0.0057 30.2 8.3 82 875-985 115-203 (247)
309 PLN02335 anthranilate synthase 28.5 94 0.002 33.3 5.3 53 857-909 16-68 (222)
310 TIGR02311 HpaI 2,4-dihydroxyhe 28.4 5.6E+02 0.012 27.9 11.4 100 875-999 3-105 (249)
311 PRK05718 keto-hydroxyglutarate 28.2 7.5E+02 0.016 26.3 12.4 94 876-998 9-106 (212)
312 TIGR02026 BchE magnesium-proto 27.9 4E+02 0.0086 32.2 11.1 60 868-927 21-88 (497)
313 cd01573 modD_like ModD; Quinol 27.6 2.5E+02 0.0055 31.1 8.6 70 886-984 187-256 (272)
314 TIGR00734 hisAF_rel hisA/hisF 27.4 2.9E+02 0.0064 29.5 8.8 68 891-985 142-212 (221)
315 PRK10669 putative cation:proto 27.3 3.6E+02 0.0079 33.0 10.8 28 956-985 507-534 (558)
316 PLN02274 inosine-5'-monophosph 27.1 2E+02 0.0044 34.9 8.3 68 890-985 247-316 (505)
317 COG0742 N6-adenine-specific me 27.1 1.7E+02 0.0037 30.5 6.6 53 859-911 66-122 (187)
318 PRK06106 nicotinate-nucleotide 27.0 2.4E+02 0.0051 31.5 8.1 67 886-984 198-264 (281)
319 TIGR01163 rpe ribulose-phospha 26.7 4.8E+02 0.01 27.0 10.3 87 875-985 96-192 (210)
320 PRK10742 putative methyltransf 26.6 5.5E+02 0.012 28.1 10.6 58 859-917 110-178 (250)
321 PRK13566 anthranilate synthase 26.6 1.3E+02 0.0028 38.1 6.8 52 857-909 524-575 (720)
322 CHL00200 trpA tryptophan synth 26.5 1.7E+02 0.0036 32.3 6.9 43 956-998 90-138 (263)
323 cd00331 IGPS Indole-3-glycerol 26.3 3.4E+02 0.0073 28.6 9.1 43 957-999 72-116 (217)
324 KOG1229 3'5'-cyclic nucleotide 26.2 37 0.00081 39.0 1.7 102 224-325 159-264 (775)
325 cd02940 DHPD_FMN Dihydropyrimi 26.2 3.8E+02 0.0083 29.9 9.9 29 956-984 251-279 (299)
326 PF06283 ThuA: Trehalose utili 26.1 1.2E+02 0.0025 32.2 5.5 68 861-929 1-78 (217)
327 PRK03659 glutathione-regulated 26.1 3.7E+02 0.0079 33.4 10.6 29 955-985 489-517 (601)
328 COG2022 ThiG Uncharacterized e 25.9 3.6E+02 0.0079 29.1 8.7 82 875-985 122-210 (262)
329 cd00532 MGS-like MGS-like doma 25.7 1.7E+02 0.0037 27.5 6.0 52 875-926 34-96 (112)
330 TIGR01425 SRP54_euk signal rec 25.6 5.2E+02 0.011 30.7 11.1 68 859-928 128-207 (429)
331 PLN02366 spermidine synthase 25.5 2.7E+02 0.0059 31.4 8.5 56 860-915 116-177 (308)
332 PTZ00314 inosine-5'-monophosph 25.4 1.5E+02 0.0032 35.9 6.8 62 894-984 244-308 (495)
333 PLN02775 Probable dihydrodipic 25.4 3.9E+02 0.0084 29.9 9.4 78 885-990 59-138 (286)
334 TIGR00417 speE spermidine synt 25.4 4.6E+02 0.01 28.8 10.3 67 860-927 97-174 (270)
335 PRK14538 putative bifunctional 25.0 3.5E+02 0.0076 35.0 10.2 48 221-268 101-149 (838)
336 TIGR01163 rpe ribulose-phospha 24.8 4.6E+02 0.0099 27.2 9.7 54 917-997 43-97 (210)
337 cd04731 HisF The cyclase subun 24.8 3.4E+02 0.0074 29.1 9.0 69 890-985 27-99 (243)
338 PLN02591 tryptophan synthase 24.7 9.1E+02 0.02 26.4 12.1 98 862-987 110-219 (250)
339 PRK05637 anthranilate synthase 24.5 1.2E+02 0.0026 32.2 5.1 49 860-909 2-50 (208)
340 PLN02589 caffeoyl-CoA O-methyl 24.4 2.9E+02 0.0063 30.1 8.2 53 860-912 105-165 (247)
341 PRK01033 imidazole glycerol ph 24.2 3.5E+02 0.0075 29.6 8.9 72 892-990 154-231 (258)
342 cd04731 HisF The cyclase subun 24.2 4.1E+02 0.0089 28.5 9.5 42 957-998 193-241 (243)
343 TIGR00566 trpG_papA glutamine 24.1 1E+02 0.0023 31.9 4.6 48 862-909 2-49 (188)
344 PF02581 TMP-TENI: Thiamine mo 24.1 4.9E+02 0.011 26.6 9.6 82 874-984 87-175 (180)
345 COG0421 SpeE Spermidine syntha 24.0 1.2E+02 0.0025 33.9 5.1 55 860-915 101-161 (282)
346 PRK06843 inosine 5-monophospha 24.0 2.4E+02 0.0051 33.2 7.8 64 894-984 156-220 (404)
347 PRK05703 flhF flagellar biosyn 24.0 6.3E+02 0.014 29.9 11.5 103 859-984 251-363 (424)
348 PRK08649 inosine 5-monophospha 23.8 9.1E+02 0.02 28.0 12.5 84 872-985 121-214 (368)
349 cd06346 PBP1_ABC_ligand_bindin 23.7 6E+02 0.013 28.1 11.0 64 862-927 141-214 (312)
350 PRK04128 1-(5-phosphoribosyl)- 23.7 2.7E+02 0.0058 29.9 7.7 69 888-985 141-210 (228)
351 PF14097 SpoVAE: Stage V sporu 23.5 2.3E+02 0.005 28.9 6.4 67 862-928 3-80 (180)
352 PRK11572 copper homeostasis pr 23.3 3.2E+02 0.007 29.8 8.1 92 866-984 97-196 (248)
353 PF00448 SRP54: SRP54-type pro 23.1 1.5E+02 0.0032 31.0 5.5 90 871-984 44-146 (196)
354 PF07652 Flavi_DEAD: Flaviviru 22.8 1.1E+02 0.0025 30.5 4.2 69 858-928 32-121 (148)
355 KOG3561 Aryl-hydrocarbon recep 22.6 1.5E+02 0.0033 37.6 6.2 52 221-272 94-148 (803)
356 PRK05286 dihydroorotate dehydr 22.5 2E+02 0.0044 32.9 6.9 45 957-1001 289-340 (344)
357 COG0352 ThiE Thiamine monophos 22.4 4.3E+02 0.0092 28.2 8.7 68 888-984 110-184 (211)
358 PTZ00108 DNA topoisomerase 2-l 22.3 93 0.002 42.0 4.5 50 594-643 96-157 (1388)
359 PF03808 Glyco_tran_WecB: Glyc 22.2 3E+02 0.0065 28.1 7.4 68 858-927 47-123 (172)
360 PRK12704 phosphodiesterase; Pr 22.2 64 0.0014 39.2 2.9 40 960-999 252-293 (520)
361 PF07412 Geminin: Geminin; In 22.1 2.2E+02 0.0047 30.0 6.2 54 166-219 104-160 (200)
362 PRK09016 quinolinate phosphori 22.1 3.6E+02 0.0078 30.3 8.4 67 886-984 212-278 (296)
363 PLN02274 inosine-5'-monophosph 22.0 1.1E+03 0.025 28.5 13.4 99 859-985 260-379 (505)
364 cd01424 MGS_CPS_II Methylglyox 22.0 4.9E+02 0.011 24.1 8.3 30 893-922 57-88 (110)
365 PRK04338 N(2),N(2)-dimethylgua 22.0 4.6E+02 0.01 30.6 9.7 62 861-927 83-147 (382)
366 PRK03947 prefoldin subunit alp 21.9 7.5E+02 0.016 24.1 10.0 57 90-147 15-74 (140)
367 TIGR00095 RNA methyltransferas 21.8 2.6E+02 0.0056 29.0 7.0 66 861-926 74-144 (189)
368 PRK13143 hisH imidazole glycer 21.7 2E+02 0.0043 30.1 6.1 44 860-909 1-44 (200)
369 TIGR00343 pyridoxal 5'-phospha 21.6 1.3E+02 0.0028 33.4 4.7 29 957-985 197-227 (287)
370 CHL00101 trpG anthranilate syn 21.3 1.2E+02 0.0026 31.5 4.3 48 862-909 2-49 (190)
371 TIGR01303 IMP_DH_rel_1 IMP deh 21.3 3.2E+02 0.0069 32.9 8.4 69 888-984 222-292 (475)
372 PLN02716 nicotinate-nucleotide 21.0 6.2E+02 0.013 28.6 10.0 71 887-984 208-288 (308)
373 PRK05742 nicotinate-nucleotide 21.0 3.6E+02 0.0077 30.0 8.1 67 887-985 194-260 (277)
374 COG0134 TrpC Indole-3-glycerol 20.8 6.5E+02 0.014 27.6 9.8 86 873-985 146-235 (254)
375 PTZ00314 inosine-5'-monophosph 20.6 6.9E+02 0.015 30.3 11.1 29 957-985 344-372 (495)
376 TIGR01302 IMP_dehydrog inosine 20.5 2.5E+02 0.0054 33.5 7.4 60 898-984 231-291 (450)
377 PRK06978 nicotinate-nucleotide 20.5 3.5E+02 0.0077 30.3 7.9 66 887-984 210-275 (294)
378 PRK11036 putative S-adenosyl-L 20.5 7.3E+02 0.016 26.8 10.6 68 859-927 66-137 (255)
379 PRK03522 rumB 23S rRNA methylu 20.4 6.1E+02 0.013 28.5 10.2 64 860-927 196-263 (315)
380 PRK13585 1-(5-phosphoribosyl)- 20.3 8.6E+02 0.019 25.9 11.0 79 891-997 150-239 (241)
381 PRK10416 signal recognition pa 20.2 8E+02 0.017 27.8 11.0 53 859-911 142-204 (318)
382 PRK04457 spermidine synthase; 20.1 8.9E+02 0.019 26.5 11.1 68 859-927 90-165 (262)
383 PLN02476 O-methyltransferase 20.0 3.9E+02 0.0085 29.7 8.2 53 860-912 144-203 (278)
384 PF10087 DUF2325: Uncharacteri 20.0 1.4E+02 0.003 27.3 4.0 65 861-928 1-70 (97)
No 1
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=3.6e-65 Score=642.04 Aligned_cols=504 Identities=29% Similarity=0.466 Sum_probs=422.1
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhh
Q 039716 201 TNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQ 277 (1002)
Q Consensus 201 ~~l~~~~~~~~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~ 277 (1002)
..|.+...+.++..+.+++++.+++.+++++|.+++..|.++++.++|..+ .|+..++++|++..+++++.......
T Consensus 134 ~~L~~~i~~r~~~~~~l~~~~~~l~~il~~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~~~~~ 213 (779)
T PRK11091 134 EQLKNEIKEREETQIELEQQSSLLRSFLDASPDLVYYRNEDGEFSGCNRAMELLTGKSEKQLIGLTPKDVYSPEAAEKVI 213 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEECCCCcEEeEcHHHHHHhCcCHHHHcCCChHHhCCHHHHHHHH
Confidence 445555555667778899999999999999999999999999999998764 67888999999999999876555555
Q ss_pred HHHHHHHHhCCCcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 278 DFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETEL 357 (1002)
Q Consensus 278 ~~~~~vl~~g~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el 357 (1002)
.....++..+.+...+..+....+...++.++..|+++.+|.+.|+++++.|||++++.++++.+..
T Consensus 214 ~~~~~~~~~~~~~~~e~~~~~~~G~~~~~~~~~~pi~~~~g~~~g~v~~~~DITe~k~~e~~l~~a~------------- 280 (779)
T PRK11091 214 ETDEKVFRHNVSLTYEQWLDYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEKAS------------- 280 (779)
T ss_pred HHHHHHHhcCCCeEEEEEEEcCCCCEEEEEEEeeeEEcCCCCEEEEEEEEeehhHHHHHHHHHHHHH-------------
Confidence 5566777777776666666666666678888999999999999999999999999876654432211
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 039716 358 NKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMK 437 (1002)
Q Consensus 358 ~k~~~~~e~~~~~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~ 437 (1002)
..+.+|+++|||||||||++|.|++++|.....++++++++..+..++.++..+|++++++++++++.+.
T Consensus 281 ----------~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~ 350 (779)
T PRK11091 281 ----------RDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQ 350 (779)
T ss_pred ----------HHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCcE
Confidence 0124799999999999999999999999888888999999999999999999999999999999999999
Q ss_pred eEeeecCHHHHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCC
Q 039716 438 LEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPP 516 (1002)
Q Consensus 438 l~~~~~~l~~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~ 516 (1002)
+...++++.++++.+...+..... +++.+........|..+.+|+.+|+|||.||++||+||++.|.|.|.+....
T Consensus 351 ~~~~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~v~i~~~~~~--- 427 (779)
T PRK11091 351 LDNQPIDFTDFLADLENLSGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGGVTVRVRYEE--- 427 (779)
T ss_pred EEeeccCHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcc---
Confidence 999999999999999887766543 6677777777777777999999999999999999999999998887764310
Q ss_pred cccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEE
Q 039716 517 FAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDV 596 (1002)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 596 (1002)
...+.|+|
T Consensus 428 ------------------------------------------------------------------------~~~~~i~V 435 (779)
T PRK11091 428 ------------------------------------------------------------------------GDMLTFEV 435 (779)
T ss_pred ------------------------------------------------------------------------CCEEEEEE
Confidence 11378999
Q ss_pred EecCCCCCcCcHhhhhhhccCC-CccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCCCCCCCCC
Q 039716 597 YDTGIGIPENALPTLFRKYMQV-SADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSD 675 (1002)
Q Consensus 597 ~DtGiGI~~e~l~~IF~pF~q~-~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~~~~~~~~ 675 (1002)
.|||+|||++.+++||+|||++ +...++.++||||||+|||+||+.|||+|+|+|.+|+||+|+|+||+.........
T Consensus 436 ~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~- 514 (779)
T PRK11091 436 EDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVED- 514 (779)
T ss_pred EecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEecccccccccc-
Confidence 9999999999999999999998 44445557899999999999999999999999999999999999997432100000
Q ss_pred CCCccccccccCCcccccccccccccccccccccccCCcccccccccccccccccccccCccccccCCCCCcccccccch
Q 039716 676 DPDDLSDMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPL 755 (1002)
Q Consensus 676 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (1002)
T Consensus 515 -------------------------------------------------------------------------------- 514 (779)
T PRK11091 515 -------------------------------------------------------------------------------- 514 (779)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhccHHHHHhhhCCCCCCCCCCCCCCcchhhcccccccccccccccCCCCCccchhhhhHHHhhcccCCCchhhhhhcc
Q 039716 756 EDACSVAEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQE 835 (1002)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1002)
.+
T Consensus 515 ----------------------~~-------------------------------------------------------- 516 (779)
T PRK11091 515 ----------------------AF-------------------------------------------------------- 516 (779)
T ss_pred ----------------------cc--------------------------------------------------------
Confidence 00
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCC
Q 039716 836 KPDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915 (1002)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~ 915 (1002)
. ....+..+.+||||||++.++..+..+|+..||.|..|.+|.+|++.+....||+||||+.||+
T Consensus 517 -----------~----~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~~Dlvl~D~~mp~ 581 (779)
T PRK11091 517 -----------D----EDDMPLPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPDEYDLVLLDIQLPD 581 (779)
T ss_pred -----------c----cccccccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCCCCEEEEcCCCCC
Confidence 0 0000023468999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCC-ccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHH
Q 039716 916 MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR-IPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLK 994 (1002)
Q Consensus 916 mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~ 994 (1002)
|||+++++.||.... .+. +|||++|++... ...+|+.+||++||.||++..+|.
T Consensus 582 ~~G~e~~~~ir~~~~------------------------~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~ 636 (779)
T PRK11091 582 MTGLDIARELRERYP------------------------REDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALT 636 (779)
T ss_pred CCHHHHHHHHHhccc------------------------cCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHH
Confidence 999999999996321 134 499999998765 467899999999999999999999
Q ss_pred HHHHhhc
Q 039716 995 ECLEQYF 1001 (1002)
Q Consensus 995 ~~l~~~l 1001 (1002)
.+|.+++
T Consensus 637 ~~l~~~~ 643 (779)
T PRK11091 637 AMIKKFW 643 (779)
T ss_pred HHHHHHh
Confidence 9998875
No 2
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=1.7e-57 Score=574.96 Aligned_cols=595 Identities=27% Similarity=0.417 Sum_probs=381.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhccCcEEEEec-ccccEEEeeccCCCCCcccccCCCchhccCccchhhhhHHHHHHHHh
Q 039716 208 SPVEELSQILKRADNFLHFVLQNAPVVMGHQD-KELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEK 286 (1002)
Q Consensus 208 ~~~~~~~~~l~~~~~~l~~il~~~p~~i~~~d-~~~~~~~~~~~~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~ 286 (1002)
.++++..+.|++++.+.+.+++++|+++...+ .++++.+.|..... +.|. ....... . .......
T Consensus 320 ~p~~~~~~~L~e~e~~~r~iv~~~p~gi~i~~~~~g~~~~~N~~a~~-----~~~l-----~~~~~~~---~-~~~~~~~ 385 (924)
T PRK10841 320 IPAESNALRLEEHEQFNRKIVASAPVGICILRTSDGTNILSNELAHN-----YLNM-----LTHEDRQ---R-LTQIICG 385 (924)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhCCccEEEEEcCCCcEEEehHHHHH-----Hhcc-----CChhHHH---H-HHHHHhc
Confidence 46667777889999999999999999998875 67877777653211 1111 1111100 1 1111111
Q ss_pred CCCcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 287 GLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEE 366 (1002)
Q Consensus 287 g~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~ 366 (1002)
. .... ..... .....+.+...+.... |+. ..+++..|||++++.++++++..++++ +
T Consensus 386 ~-~~~~-~~~~~--~~~~~~~i~~~~~~~~-~~~-~~i~~~~Dit~r~~~e~~L~~~~~~~e-----------------~ 442 (924)
T PRK10841 386 Q-QVNF-VDVLT--SNNTNLQISFVHSRYR-NEN-VAICVLVDVSARVKMEESLQEMAQAAE-----------------Q 442 (924)
T ss_pred c-ccce-eeEEc--CCCcEEEEEEEeeeec-Cce-EEEEEEEEhhHHHHHHHHHHHHHHHHH-----------------H
Confidence 1 1111 11111 1222222322222222 232 345678899998877665544332211 1
Q ss_pred HH-HHHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCH
Q 039716 367 TM-RAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445 (1002)
Q Consensus 367 ~~-~~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l 445 (1002)
+. .+..|+++|||||||||++|+|++++|.....+++++++++.|..++.+|..+|++||+|+|++++.+.++..+|++
T Consensus 443 a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~~~l~~~~~~l 522 (924)
T PRK10841 443 ASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSP 522 (924)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeeeEEecH
Confidence 11 12369999999999999999999999988888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhh
Q 039716 446 REVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQ 524 (1002)
Q Consensus 446 ~~li~~v~~~~~~~~-~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~ 524 (1002)
.+++++++..+...+ .+++.+...+.++.+..+.+|+.+|+|||.||++||+|||+.|.|.|.+...
T Consensus 523 ~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~------------ 590 (924)
T PRK10841 523 REVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD------------ 590 (924)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe------------
Confidence 999999998876654 4677777777777777899999999999999999999999999888776421
Q ss_pred hhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCC
Q 039716 525 KSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIP 604 (1002)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~ 604 (1002)
..++.|+|.|||+||+
T Consensus 591 ----------------------------------------------------------------~~~l~i~V~DtG~GI~ 606 (924)
T PRK10841 591 ----------------------------------------------------------------GDYLSFRVRDTGVGIP 606 (924)
T ss_pred ----------------------------------------------------------------CCEEEEEEEEcCcCCC
Confidence 1158899999999999
Q ss_pred cCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCCCCCCCCCCCCcccccc
Q 039716 605 ENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMA 684 (1002)
Q Consensus 605 ~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~~~~~~~~~~~~l~~~~ 684 (1002)
++.+++||+||++.+....+..+|+||||+||++||+.|||+|+++|.+|+||+|+|.||+........... ..+....
T Consensus 607 ~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~~~~~~~~~~-~~~~g~~ 685 (924)
T PRK10841 607 AKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPQKKGV-EGLQGKR 685 (924)
T ss_pred HHHHHHHhcccccCCCCCCCCCCCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCcccccccccC-cccCCCE
Confidence 999999999999987766667789999999999999999999999999999999999999864322111100 0000000
Q ss_pred ccCCcccccccccccccccccccccccCCcccccccccccccccccccccCccccccCCCCCcccccccchhhhccHHHH
Q 039716 685 DQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEV 764 (1002)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1002)
............+ +...+...+...... .. ........+- .+.+... ... .......
T Consensus 686 i~l~~~~~~~~~~-------l~~~l~~~G~~v~~~--~~-~~~~~~d~~i------~d~~~~~----~~~---~~~~~~~ 742 (924)
T PRK10841 686 CWLAVRNASLEQF-------LETLLQRSGIQVQRY--EG-QEPTPEDVLI------TDDPVQK----KWQ---GRAVITF 742 (924)
T ss_pred EEEEcCCHHHHHH-------HHHHHHHCCCeEEEc--cc-ccCCcCcEEE------EcCcccc----ccc---hhhhhhh
Confidence 0000000000000 000000000000000 00 0000000000 0000000 000 0000000
Q ss_pred HhhhCCCCCCCCCCCCCCcchhhcccccccccccccccCCCCCccchhhhhHHHhhcccCCCchhhhhhccCCCcccCCC
Q 039716 765 AETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSP 844 (1002)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (1002)
. . .+...+. . .....+...+... .. ...... .............
T Consensus 743 ~----~-----~~~~~~~---~--------~~~~~~~~~~~~~----~~-l~~~l~-----------~~~~~~~~~~~~~ 786 (924)
T PRK10841 743 C----R-----RHIGIPL---E--------IAPGEWVHSTATP----HE-LPALLA-----------RIYRIELESDDSA 786 (924)
T ss_pred h----h-----ccccChh---h--------cccCceeeccCCh----HH-HHHHHH-----------HHhhccccccccc
Confidence 0 0 0000000 0 0000000000000 00 000000 0000000000000
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHH
Q 039716 845 SSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRL 924 (1002)
Q Consensus 845 ~~~~~~~~~~~~~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~ 924 (1002)
................+||||||++.++.++..+|+..||.|..|.||.+|++.+....||+||||++||+|||+++++.
T Consensus 787 ~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~~DlVl~D~~mP~mdG~el~~~ 866 (924)
T PRK10841 787 NALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLTDVNMPNMDGYRLTQR 866 (924)
T ss_pred ccccccccccccCCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHH
Confidence 00000011111234679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 925 IRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 925 IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
||+. .+.+|||++|++...+...+|+++||++||.||++..+|...|.++.
T Consensus 867 ir~~--------------------------~~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~ 917 (924)
T PRK10841 867 LRQL--------------------------GLTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYA 917 (924)
T ss_pred HHhc--------------------------CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 9963 24689999999999999999999999999999999999999998763
No 3
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=8.9e-52 Score=543.49 Aligned_cols=502 Identities=27% Similarity=0.349 Sum_probs=364.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeeccCCCCCccc---ccCCCchhccCccchhhhhHHHHHHHH-h
Q 039716 211 EELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHEED---ILGKTDVEIFSGAGVKESQDFKREVLE-K 286 (1002)
Q Consensus 211 ~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~~~~~~e~---iiGk~~~e~~~~~~~~~~~~~~~~vl~-~ 286 (1002)
+.++..+++.+.+++.+++++|.+|+..|.++++.++|..+..+.... ..+...... ................. .
T Consensus 565 ~~~~~~l~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 643 (1197)
T PRK09959 565 KVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENS-DSPFKDVFSNAHEVTAETK 643 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcEEEEcCCCcEEEehHHHHHHhCcccccccccccccc-cCchhhhHhHHHHHHHHHh
Confidence 445667788888999999999999999999999999987654321111 001000000 00000000000000001 1
Q ss_pred CCCcceeEEEEEeecCceE-EEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 287 GLPAKREITFETELFGSKT-FLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITE 365 (1002)
Q Consensus 287 g~~~~~e~~~~~~~~~~~~-~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e 365 (1002)
.........+....++... +..+..+.....+...|++..+.|||+.++..+.++..+++.. +
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dite~~~~~~~l~~~~~~~~----------------~ 707 (1197)
T PRK09959 644 ENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAI----------------N 707 (1197)
T ss_pred hccccceeeEeeecCccceeeeeeeeeeccCCCCceEEEEEEEehhHHHHHHHHHHHHHHHHH----------------H
Confidence 1111111122222222222 2222223323344556777788999987766554433222110 1
Q ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecC
Q 039716 366 ETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDRE-QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFR 444 (1002)
Q Consensus 366 ~~~~~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~-~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~ 444 (1002)
+....++|+++|||||||||++|.|++++|.....+.+ ..+++..+..++++|..+|++++++++++++...+...+++
T Consensus 708 ~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~~ 787 (1197)
T PRK09959 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVD 787 (1197)
T ss_pred HHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeeeeeeC
Confidence 11223589999999999999999999999976655554 45788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhh
Q 039716 445 PREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLK 523 (1002)
Q Consensus 445 l~~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~ 523 (1002)
+.+++++++..+..... +++.+........+..+.+|+.+|+|||.||++||+||++.|.+.|.+.....
T Consensus 788 l~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~--------- 858 (1197)
T PRK09959 788 IPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHI--------- 858 (1197)
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeee---------
Confidence 99999999988776543 55655544332333468999999999999999999999999987776532110
Q ss_pred hhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCC
Q 039716 524 QKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGI 603 (1002)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI 603 (1002)
.....++.|+|.|||+||
T Consensus 859 --------------------------------------------------------------~~~~~~~~i~V~D~G~Gi 876 (1197)
T PRK09959 859 --------------------------------------------------------------DDNHAVIKMTIMDSGSGL 876 (1197)
T ss_pred --------------------------------------------------------------cCCceEEEEEEEEcCCCC
Confidence 011225789999999999
Q ss_pred CcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCCCCCCCCCCCCccccc
Q 039716 604 PENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDM 683 (1002)
Q Consensus 604 ~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~~~~~~~~~~~~l~~~ 683 (1002)
|++.+++||+||++.+. .+..+|+||||+|||+||+.|||+|+++|.+|+||+|+|+||+........
T Consensus 877 ~~~~~~~iF~~f~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~---------- 944 (1197)
T PRK09959 877 SQEEQQQLFKRYSQTSA--GRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVAT---------- 944 (1197)
T ss_pred CHHHHHHhhcccccccc--CCCCCCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcc----------
Confidence 99999999999998754 234579999999999999999999999999999999999999742110000
Q ss_pred cccCCcccccccccccccccccccccccCCcccccccccccccccccccccCccccccCCCCCcccccccchhhhccHHH
Q 039716 684 ADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAE 763 (1002)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1002)
T Consensus 945 -------------------------------------------------------------------------------- 944 (1197)
T PRK09959 945 -------------------------------------------------------------------------------- 944 (1197)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhCCCCCCCCCCCCCCcchhhcccccccccccccccCCCCCccchhhhhHHHhhcccCCCchhhhhhccCCCcccCC
Q 039716 764 VAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQS 843 (1002)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1002)
.... ...
T Consensus 945 ---------------~~~~-----------------------------------------~~~----------------- 951 (1197)
T PRK09959 945 ---------------VEAK-----------------------------------------AEQ----------------- 951 (1197)
T ss_pred ---------------cccc-----------------------------------------ccc-----------------
Confidence 0000 000
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHH
Q 039716 844 PSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATR 923 (1002)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~ 923 (1002)
+ .......+||||||++.++..+..+|+..|+.|..+.+|.+|++.+....||+||+|+.||+|+|+++++
T Consensus 952 ---~------~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlil~D~~mp~~~g~~~~~ 1022 (1197)
T PRK09959 952 ---P------ITLPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTR 1022 (1197)
T ss_pred ---c------cccccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHH
Confidence 0 0001235899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 924 LIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 924 ~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.||.. .+.+|||++|++.......+|+.+|+++||.||++..+|...|.++
T Consensus 1023 ~i~~~--------------------------~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~ 1073 (1197)
T PRK09959 1023 KLREQ--------------------------NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQL 1073 (1197)
T ss_pred HHHhc--------------------------CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 99962 2568999999999999999999999999999999999999998764
No 4
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=2e-52 Score=536.27 Aligned_cols=493 Identities=31% Similarity=0.465 Sum_probs=328.5
Q ss_pred HHHHHHH-HHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeee
Q 039716 364 TEETMRA-KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAK 442 (1002)
Q Consensus 364 ~e~~~~~-k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~ 442 (1002)
++++.+. .+|+++|||||||||++|+|+++++.....++.++++++.|..++++|..+|+++|+|+|++.+.+.+...+
T Consensus 286 ~~~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~ 365 (919)
T PRK11107 286 AQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLVLENIP 365 (919)
T ss_pred HHHHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEee
Confidence 3344443 389999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHH-hhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccch
Q 039716 443 FRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEG 521 (1002)
Q Consensus 443 ~~l~~li~~v~~~~~~~~-~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~ 521 (1002)
|++.+++++++..+...+ .+++.+...+.+..|..+.+|+.+|+|||.||++||+|||+.|.|.|.+......
T Consensus 366 ~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~------ 439 (919)
T PRK11107 366 FSLRETLDEVVTLLAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDILVELRALS------ 439 (919)
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCcEEEEEEEEecC------
Confidence 999999999998887655 4677777777777777789999999999999999999999999888777542110
Q ss_pred hhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCC
Q 039716 522 LKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGI 601 (1002)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGi 601 (1002)
....++.|+|.|||+
T Consensus 440 -----------------------------------------------------------------~~~~~~~i~V~D~G~ 454 (919)
T PRK11107 440 -----------------------------------------------------------------NTKVQLEVQIRDTGI 454 (919)
T ss_pred -----------------------------------------------------------------CCeeEEEEEEEEeCC
Confidence 112358899999999
Q ss_pred CCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCCCCCCCCCCCCccc
Q 039716 602 GIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLS 681 (1002)
Q Consensus 602 GI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~~~~~~~~~~~~l~ 681 (1002)
|||++.+++||+||++.+...+++++|+||||+|||++++.|||+|+|+|.+|+||+|+|+||+...+.......+ ..
T Consensus 455 Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~~~--~~ 532 (919)
T PRK11107 455 GISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDGLP--TD 532 (919)
T ss_pred CcCHHHHHHHhhhhccCCCCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccccccCC--cc
Confidence 9999999999999999988777788999999999999999999999999999999999999998654321110000 00
Q ss_pred cccccCC-cccccccccccccccccccccccCCcccccccccccccccccccccCccccccCCCCCcccccccchhhhcc
Q 039716 682 DMADQDS-VTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACS 760 (1002)
Q Consensus 682 ~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (1002)
....... ..++.. .....+...+...+..... ...........++. ...... ......
T Consensus 533 ~~~g~~ili~d~~~-----~~~~~l~~~L~~~g~~v~~-----------~~~~~~l~~~~~d~---il~~~~--~~~~~~ 591 (919)
T PRK11107 533 CLAGKRLLYVEPNS-----AAAQATLDILSETPLEVTY-----------SPTLSQLPEAHYDI---LLLGLP--VTFREP 591 (919)
T ss_pred ccCCCeEEEEeCCH-----HHHHHHHHHHHHCCCEEEE-----------cCCHHHhccCCCCE---EEeccc--CCCCCC
Confidence 0000000 000000 0000000000000000000 00000000000000 000000 000000
Q ss_pred HHHHHhhhCCCCCC----CCCCCCCCcchhhcccccccccccccccCCCCCccchhhhhHHHhhcccCCCchhhhhhccC
Q 039716 761 VAEVAETLSEPESS----FSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEK 836 (1002)
Q Consensus 761 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1002)
.............. ....+........ .........++.+|.. ..........
T Consensus 592 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~g~~~~l~kp~~--------------------~~~l~~~l~~ 648 (919)
T PRK11107 592 LTMLHERLAKAKSMTDFLILALPCHEQVLAE---QLKQDGADACLSKPLS--------------------HTRLLPALLE 648 (919)
T ss_pred HHHHHHHHHhhhhcCCcEEEEeCCcchhhHH---HHhhCCCceEECCCCC--------------------HHHHHHHHHH
Confidence 00000000000000 0000000000000 0000000001111110 0000000000
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCC
Q 039716 837 PDRISQSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM 916 (1002)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~m 916 (1002)
.......+ ............+||||||++.++..++.+|+..|+.|..+.+|.+|++.+....||+||||+.||+|
T Consensus 649 ~~~~~~~~----~~~~~~~~~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~~dlil~D~~mp~~ 724 (919)
T PRK11107 649 PCHHKQPP----LLPPTDESRLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRPFDLILMDIQMPGM 724 (919)
T ss_pred hhcccccc----cccccccccCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence 00000000 00001111345789999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHH
Q 039716 917 DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKEC 996 (1002)
Q Consensus 917 dG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~ 996 (1002)
||+++++.||+.. ..+.+|||++|++...+...+|+++||++||.||++..+|...
T Consensus 725 ~g~~~~~~lr~~~------------------------~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~ 780 (919)
T PRK11107 725 DGIRACELIRQLP------------------------HNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQV 780 (919)
T ss_pred cHHHHHHHHHhcc------------------------cCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHH
Confidence 9999999999742 2356999999999999999999999999999999999999999
Q ss_pred HHhhc
Q 039716 997 LEQYF 1001 (1002)
Q Consensus 997 l~~~l 1001 (1002)
|.+++
T Consensus 781 l~~~~ 785 (919)
T PRK11107 781 LLRYK 785 (919)
T ss_pred HHHHc
Confidence 99875
No 5
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=100.00 E-value=1.4e-52 Score=540.45 Aligned_cols=362 Identities=37% Similarity=0.583 Sum_probs=313.9
Q ss_pred HHHHHH-HHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeec
Q 039716 365 EETMRA-KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443 (1002)
Q Consensus 365 e~~~~~-k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~ 443 (1002)
++..++ .+|+++|||||||||++|.|++++|.+..++++++++++.|..++++|..+|+++|+|++++.+...+...+|
T Consensus 458 ~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~~~~~~~~~~ 537 (968)
T TIGR02956 458 EEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGHLSISPRPF 537 (968)
T ss_pred HHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeeccc
Confidence 333433 4899999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchh
Q 039716 444 RPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGL 522 (1002)
Q Consensus 444 ~l~~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~ 522 (1002)
++.+++++++..+..... +++.+...++++.|..+.+|+.+|+|||.|||+||+|||+.|.|.|.+.....
T Consensus 538 ~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~i~i~~~~~~~-------- 609 (968)
T TIGR02956 538 DLNALLDDVHHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGSVVLRVSLNDD-------- 609 (968)
T ss_pred CHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCeEEEEEEEcCC--------
Confidence 999999999998877654 67888888877778789999999999999999999999999998887743210
Q ss_pred hhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCC
Q 039716 523 KQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIG 602 (1002)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiG 602 (1002)
. .+.|+|.|+|+|
T Consensus 610 ------------------------------------------------------------------~-~~~i~V~D~G~G 622 (968)
T TIGR02956 610 ------------------------------------------------------------------S-SLLFEVEDTGCG 622 (968)
T ss_pred ------------------------------------------------------------------C-eEEEEEEeCCCC
Confidence 0 178999999999
Q ss_pred CCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCCCCCCCCCCCCcccc
Q 039716 603 IPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSD 682 (1002)
Q Consensus 603 I~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~~~~~~~~~~~~l~~ 682 (1002)
||++.+++||+||++.+ ..+.++|+||||+|||++|+.|||+|+++|.+|+||+|+|+||+.........
T Consensus 623 i~~~~~~~if~~f~~~~--~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~-------- 692 (968)
T TIGR02956 623 IAEEEQATLFDAFTQAD--GRRRSGGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDS-------- 692 (968)
T ss_pred CCHHHHHHHHhhhhccC--CCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccc--------
Confidence 99999999999999987 34566899999999999999999999999999999999999997532100000
Q ss_pred ccccCCcccccccccccccccccccccccCCcccccccccccccccccccccCccccccCCCCCcccccccchhhhccHH
Q 039716 683 MADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVA 762 (1002)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1002)
T Consensus 693 -------------------------------------------------------------------------------- 692 (968)
T TIGR02956 693 -------------------------------------------------------------------------------- 692 (968)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhCCCCCCCCCCCCCCcchhhcccccccccccccccCCCCCccchhhhhHHHhhcccCCCchhhhhhccCCCcccC
Q 039716 763 EVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQ 842 (1002)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (1002)
..
T Consensus 693 -----------------~~------------------------------------------------------------- 694 (968)
T TIGR02956 693 -----------------AT------------------------------------------------------------- 694 (968)
T ss_pred -----------------cc-------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHH
Q 039716 843 SPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKAT 922 (1002)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~ 922 (1002)
.........+||||||++.++..+..+|+..||.|..+.||.+|++.+....||+||||++||+|||++++
T Consensus 695 ---------~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvl~D~~mp~~~g~~~~ 765 (968)
T TIGR02956 695 ---------LTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQHAFDLALLDINLPDGDGVTLL 765 (968)
T ss_pred ---------cccccccccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHH
Confidence 00000123479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 923 RLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 923 ~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
+.||.... ...++|||++|++...+...+|+.+||++|+.||++..+|...|.+++
T Consensus 766 ~~ir~~~~-----------------------~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 821 (968)
T TIGR02956 766 QQLRAIYG-----------------------AKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVIL 821 (968)
T ss_pred HHHHhCcc-----------------------ccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHh
Confidence 99997431 112389999999999999999999999999999999999999998875
No 6
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=100.00 E-value=2.3e-51 Score=526.58 Aligned_cols=410 Identities=32% Similarity=0.487 Sum_probs=311.9
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK 450 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~ 450 (1002)
.+|++++||||||||++|.|++++|.....+++++++++.+..++.+|..+|+++|+++|++.+.+.+...++++.++++
T Consensus 399 ~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~~l~~~~~ 478 (921)
T PRK15347 399 SEHLTTISHEIRTPLNGVLGALELLQNTPLTAEQMDLADTARQCTLSLLAIINNLLDFSRIESGQMTLSLEETALLPLLD 478 (921)
T ss_pred HHHHHHhHHHhchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceecccCHHHHHH
Confidence 48999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhhhhh
Q 039716 451 HVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAY 529 (1002)
Q Consensus 451 ~v~~~~~~~~-~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~~~ 529 (1002)
+++..+.... .+++.+...+.+..|..+.+|+.+|+|||.|||+||+|||+.|.|.|++...
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~I~i~~~~~----------------- 541 (921)
T PRK15347 479 QAMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGGIRLRVKRH----------------- 541 (921)
T ss_pred HHHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCCEEEEEEEc-----------------
Confidence 9988877654 4677777777778888899999999999999999999999999888876421
Q ss_pred hcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHh
Q 039716 530 QSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALP 609 (1002)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~ 609 (1002)
..++.|+|.|||+||+++.++
T Consensus 542 -----------------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~ 562 (921)
T PRK15347 542 -----------------------------------------------------------EQQLCFTVEDTGCGIDIQQQQ 562 (921)
T ss_pred -----------------------------------------------------------CCEEEEEEEEcCCCCCHHHHH
Confidence 114889999999999999999
Q ss_pred hhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCCCCCCCCCCCCccccccccCCc
Q 039716 610 TLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQDSV 689 (1002)
Q Consensus 610 ~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~~~~~~~~~~~~l~~~~~~~~~ 689 (1002)
+||+||++.+. ..+|+||||+||+++++.|||+|+++|.+|+||+|+|.||+....... ...... .
T Consensus 563 ~if~~f~~~~~----~~~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~~~~~~------~~~~~~---~- 628 (921)
T PRK15347 563 QIFTPFYQADT----HSQGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNEYAPPE------PLKGEL---S- 628 (921)
T ss_pred HHhcCcccCCC----CCCCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCCCCCcc------cccccc---c-
Confidence 99999998753 346999999999999999999999999999999999999985421100 000000 0
Q ss_pred ccccccccccccccccccccccCCcccccccccccccccccccccCccccccCCCCCcccccccchhhhccHHHHHhhhC
Q 039716 690 TDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAETLS 769 (1002)
Q Consensus 690 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1002)
.+..+.......+ .
T Consensus 629 -----------~~~~~~~~~~~~~-------------~------------------------------------------ 642 (921)
T PRK15347 629 -----------APLALHRQLSAWG-------------I------------------------------------------ 642 (921)
T ss_pred -----------chHHHHHHHHHcC-------------C------------------------------------------
Confidence 0000000000000 0
Q ss_pred CCCCCCCCCCCCCcchhhcccccccccccccccCCCCCccchhhhhHHHhhcccCCCchhhhhhccCCCcccCCCCCCCC
Q 039716 770 EPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSSSA 849 (1002)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1002)
.+.... ...... . .....+ + ... ..... ...... +.....
T Consensus 643 ~~~~~~-~~~~~~------~------~~~~~~--~-------~~~-~~~~~-----------~~~~~~------~~~~~~ 682 (921)
T PRK15347 643 TCQPGH-QNPALL------D------PELAYL--P-------GRL-YDLLQ-----------QIIQGA------PNEPVI 682 (921)
T ss_pred cccccc-cchhhc------c------hhhhhc--c-------hHH-HHHHH-----------HHhhcC------CCcccc
Confidence 000000 000000 0 000000 0 000 00000 000000 000000
Q ss_pred CCCCCCCCCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccc
Q 039716 850 EVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFE 929 (1002)
Q Consensus 850 ~~~~~~~~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~ 929 (1002)
..+ ....+.+||||||++.++..+..+|+..|+.|..|.+|.+|++.+....||+||||+.||+|||+++++.||+..
T Consensus 683 ~~~--~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlil~D~~mp~~~G~~~~~~ir~~~ 760 (921)
T PRK15347 683 NLP--LQPWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHRFDLVLMDIRMPGLDGLETTQLWRDDP 760 (921)
T ss_pred cCC--CCcccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhch
Confidence 001 112346899999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.. ..+++|||++|++...+...+|+++||++||.||++..+|..+|.++
T Consensus 761 ~~----------------------~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~ 809 (921)
T PRK15347 761 NN----------------------LDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELA 809 (921)
T ss_pred hh----------------------cCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 11 23679999999999999999999999999999999999999998764
No 7
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=1e-50 Score=519.94 Aligned_cols=350 Identities=32% Similarity=0.546 Sum_probs=303.8
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--eeeEeeecCHHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGV--MKLEAAKFRPREV 448 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~--~~l~~~~~~l~~l 448 (1002)
.+|+++|||||||||++|.|++++|.....++++++++..+..++++|..+|+++|+|++++.|. +.+...+|++.++
T Consensus 445 ~~~l~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~~~~~~~~~~~~~l~~l 524 (914)
T PRK11466 445 SAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPL 524 (914)
T ss_pred HHHHHHhHHHHhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcceecccccCHHHH
Confidence 48999999999999999999999999888888999999999999999999999999999999884 5677789999999
Q ss_pred HHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhhh
Q 039716 449 VKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSK 527 (1002)
Q Consensus 449 i~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~ 527 (1002)
++.++..+...+. +++.+...+.+..|..+.+|+.+|+|||.||++||+||++.|.|.|.+...
T Consensus 525 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~I~i~~~~~--------------- 589 (914)
T PRK11466 525 LESTLQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGSIVLRSRTD--------------- 589 (914)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc---------------
Confidence 9999988876654 667787777777777899999999999999999999999999888776421
Q ss_pred hhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCc
Q 039716 528 AYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607 (1002)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~ 607 (1002)
...+.|.|.|||+|||++.
T Consensus 590 -------------------------------------------------------------~~~~~i~V~D~G~Gi~~~~ 608 (914)
T PRK11466 590 -------------------------------------------------------------GEQWLVEVEDSGCGIDPAK 608 (914)
T ss_pred -------------------------------------------------------------CCEEEEEEEECCCCCCHHH
Confidence 1147799999999999999
Q ss_pred HhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCCCCCCCCCCCCccccccccC
Q 039716 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQD 687 (1002)
Q Consensus 608 l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~~~~~~~~~~~~l~~~~~~~ 687 (1002)
+++||+||++.+. +.+|+||||+||+++++.|||+|+++|.+|+||+|+|.||+........
T Consensus 609 ~~~if~~f~~~~~----~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~-------------- 670 (914)
T PRK11466 609 LAEIFQPFVQVSG----KRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP-------------- 670 (914)
T ss_pred HHHHhchhhcCCC----CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccc--------------
Confidence 9999999998642 4579999999999999999999999999999999999999743110000
Q ss_pred CcccccccccccccccccccccccCCcccccccccccccccccccccCccccccCCCCCcccccccchhhhccHHHHHhh
Q 039716 688 SVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAET 767 (1002)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1002)
T Consensus 671 -------------------------------------------------------------------------------- 670 (914)
T PRK11466 671 -------------------------------------------------------------------------------- 670 (914)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hCCCCCCCCCCCCCCcchhhcccccccccccccccCCCCCccchhhhhHHHhhcccCCCchhhhhhccCCCcccCCCCCC
Q 039716 768 LSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSSS 847 (1002)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (1002)
.. .
T Consensus 671 ------------~~-----------------------------------------------------------------~ 673 (914)
T PRK11466 671 ------------KT-----------------------------------------------------------------V 673 (914)
T ss_pred ------------cc-----------------------------------------------------------------c
Confidence 00 0
Q ss_pred CCCCCCCCCCCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHc-CCCcEEEEcCCCCCCCHHHHHHHHh
Q 039716 848 SAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLKATRLIR 926 (1002)
Q Consensus 848 ~~~~~~~~~~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~-~~~DlIlmDi~MP~mdG~e~~~~IR 926 (1002)
.......+.+|||||||+.++..+..+|...||.|..|.+|.+|++.+.. ..||+||||++||+|||+++++.||
T Consensus 674 ----~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~~Dlvl~D~~mp~~~G~~~~~~lr 749 (914)
T PRK11466 674 ----NQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLA 749 (914)
T ss_pred ----ccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 00000124579999999999999999999999999999999999998865 5799999999999999999999999
Q ss_pred ccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 927 SFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.. .+.+|||++|++.......+|+.+|+++||.||++.++|...|.+++
T Consensus 750 ~~--------------------------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 798 (914)
T PRK11466 750 QQ--------------------------YPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYL 798 (914)
T ss_pred hh--------------------------CCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHh
Confidence 62 35689999999999999999999999999999999999999998875
No 8
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=6.6e-47 Score=455.75 Aligned_cols=493 Identities=18% Similarity=0.245 Sum_probs=373.9
Q ss_pred HHHHHHHHHHhccCcEEEEecc---cccEEEeecc---CCCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcce
Q 039716 219 RADNFLHFVLQNAPVVMGHQDK---ELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKR 292 (1002)
Q Consensus 219 ~~~~~l~~il~~~p~~i~~~d~---~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~ 292 (1002)
....+++.+++++|..|+..|. ++++.|+|+. +.|++.++++|++..+++++.............+..+.....
T Consensus 27 ~~~~~~~~~~~~~~~~i~v~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (540)
T PRK13557 27 HRSDIFFAAVETTRMPMIVTDPNQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETDRATVAEVRDAIAERREIAT 106 (540)
T ss_pred hhhHHHHHHHHhCcCcEEEEcCCCCCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcCCCCCHHHHHHHHHHHHcCCCceE
Confidence 4467889999999999999885 7899999876 468899999999998887665444444445556666665555
Q ss_pred eEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 293 EITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ 372 (1002)
Q Consensus 293 e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~~~~~k~ 372 (1002)
++......+...++..+..|+++.+|.++|++.+..|||++++.++.+.+.+ +.....+
T Consensus 107 ~~~~~~~~G~~~~~~~~~~~i~~~~g~~~~~~~~~~dit~~~~~e~~l~~~~---------------------~~~~l~~ 165 (540)
T PRK13557 107 EILNYRKDGSSFWNALFVSPVYNDAGDLVYFFGSQLDVSRRRDAEDALRQAQ---------------------KMEALGQ 165 (540)
T ss_pred EEEEEeCCCCEEEEEEEEEEeECCCCCEEEEEEEecChHHHHHHHHHHHHHH---------------------HHHHhhh
Confidence 5554444455556668889999999999999999999998765543332111 1112346
Q ss_pred HHHHhhhccccHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHH
Q 039716 373 MLATMSHEIRSPLTGVVSMAEILSNT-----KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447 (1002)
Q Consensus 373 fla~iSHELRTPL~~I~g~~elL~~~-----~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~ 447 (1002)
+++.++||+||||+.|.+++++|... .......++++.+..++.++..++++++++++.. .+....+++..
T Consensus 166 ~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~----~~~~~~~~l~~ 241 (540)
T PRK13557 166 LTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAFARKQ----RLEGRVLNLNG 241 (540)
T ss_pred hhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC----CCCCcccCHHH
Confidence 89999999999999999999987532 1234566788999999999999999999999854 23456788899
Q ss_pred HHHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC-eeEEEEEecCCCCcccchhhhhh
Q 039716 448 VVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKLYVVPEPPFAKEGLKQKS 526 (1002)
Q Consensus 448 li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G-~I~I~v~~~~~~~~~~~~~~~~~ 526 (1002)
++..+...+.....+.+.+.....+..+ .+.+|+.+|.|||.||+.||+||++.| .|.|.+........
T Consensus 242 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~--------- 311 (540)
T PRK13557 242 LVSGMGELAERTLGDAVTIETDLAPDLW-NCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDE--------- 311 (540)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCcc---------
Confidence 8888776655544555566555544443 478899999999999999999999764 45554422110000
Q ss_pred hhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcC
Q 039716 527 KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606 (1002)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e 606 (1002)
.... ........++.|+|.|+|+||+++
T Consensus 312 ----------------------------------------------~~~~------~~~~~~~~~~~i~v~D~G~Gi~~~ 339 (540)
T PRK13557 312 ----------------------------------------------DLAM------YHGLPPGRYVSIAVTDTGSGMPPE 339 (540)
T ss_pred ----------------------------------------------cccc------ccCCCCCCEEEEEEEcCCCCCCHH
Confidence 0000 000011235789999999999999
Q ss_pred cHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCCCCCCCCCCCCcccccccc
Q 039716 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLSDMADQ 686 (1002)
Q Consensus 607 ~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~~~~~~~~~~~~l~~~~~~ 686 (1002)
.+.++|+||++.+. ..+|+||||+|||++++.|||.|+++|.+|+||+|+|+||......... +
T Consensus 340 ~~~~if~~~~~~~~----~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~---~--------- 403 (540)
T PRK13557 340 ILARVMDPFFTTKE----EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPE---Q--------- 403 (540)
T ss_pred HHHhccCCCcccCC----CCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCC---C---------
Confidence 99999999997643 3469999999999999999999999999999999999999742110000 0
Q ss_pred CCcccccccccccccccccccccccCCcccccccccccccccccccccCccccccCCCCCcccccccchhhhccHHHHHh
Q 039716 687 DSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSVAEVAE 766 (1002)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 766 (1002)
T Consensus 404 -------------------------------------------------------------------------------- 403 (540)
T PRK13557 404 -------------------------------------------------------------------------------- 403 (540)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhCCCCCCCCCCCCCCcchhhcccccccccccccccCCCCCccchhhhhHHHhhcccCCCchhhhhhccCCCcccCCCCC
Q 039716 767 TLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRISQSPSS 846 (1002)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (1002)
.+
T Consensus 404 -----------~~------------------------------------------------------------------- 405 (540)
T PRK13557 404 -----------EP------------------------------------------------------------------- 405 (540)
T ss_pred -----------CC-------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcC-CCcEEEEcCCCCC-CCHHHHHHH
Q 039716 847 SSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ-NYDLILMDVCMPV-MDGLKATRL 924 (1002)
Q Consensus 847 ~~~~~~~~~~~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~-~~DlIlmDi~MP~-mdG~e~~~~ 924 (1002)
. . .......+.+||||+|++..+..+..+|+..||.+..+.++.+|+..+... .||+|++|..||. ++|+++++.
T Consensus 406 ~-~--~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~~~~~~~~~ 482 (540)
T PRK13557 406 K-A--RAIDRGGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSHPEVDLLFTDLIMPGGMNGVMLARE 482 (540)
T ss_pred C-C--cccccCCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcCCCceEEEEeccCCCCCCHHHHHHH
Confidence 0 0 000002345899999999999999999999999999999999999998765 6999999999997 999999999
Q ss_pred HhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 925 IRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 925 IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
||.. .+.+|||++|..........++..|+++|+.||++..+|...|++++
T Consensus 483 l~~~--------------------------~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 533 (540)
T PRK13557 483 ARRR--------------------------QPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVL 533 (540)
T ss_pred HHHh--------------------------CCCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHh
Confidence 9963 24589999999998888888999999999999999999999998754
No 9
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-48 Score=406.01 Aligned_cols=345 Identities=26% Similarity=0.432 Sum_probs=280.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeecc---CCCCCcccccCCCchhccCccchhhhhHHHHHHHH
Q 039716 209 PVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLE 285 (1002)
Q Consensus 209 ~~~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~ 285 (1002)
.+++++..++...+.|.+++..+..++...|+.|++..+|.. ..+...++++|++..+++.-... .. .+.+++
T Consensus 98 ~~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~i~elL~i~d~---y~-~~dL~e 173 (459)
T COG5002 98 RVQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRSILELLKIEDT---YT-FEDLVE 173 (459)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCceEeecCCCcEEEeccHHHHHhCcCHHHHhcccHHHHhCCccc---ee-HHHHHh
Confidence 455666667777889999999999999999999999999874 46778899999999998764321 11 122232
Q ss_pred hCCCcceeEEEEEeecCc-eEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 286 KGLPAKREITFETELFGS-KTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHIT 364 (1002)
Q Consensus 286 ~g~~~~~e~~~~~~~~~~-~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~ 364 (1002)
...++.++....+. ....+..+.+.-++|.+.|++.+..|+|++.+.+++
T Consensus 174 ----~~~s~lld~~~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~E------------------------- 224 (459)
T COG5002 174 ----KNDSLLLDSSDEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERE------------------------- 224 (459)
T ss_pred ----cCCcEEEeecCCCccEEEEEEEEEEeecccccceeEEEEecccHHHHHHHH-------------------------
Confidence 22345555553333 234466677788999999999999999987443221
Q ss_pred HHHHHHHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeee
Q 039716 365 EETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDRE--QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAK 442 (1002)
Q Consensus 365 e~~~~~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~--~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~ 442 (1002)
...|+|++||||||||+++.+|++.|....+.+. ...++..-....+||.+||||||.+||++....+++.+.
T Consensus 225 -----rRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~ 299 (459)
T COG5002 225 -----RREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEW 299 (459)
T ss_pred -----HHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhHHH
Confidence 1369999999999999999999999988765444 567899999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhh-cce-eccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC-eeEEEEEecCCCCccc
Q 039716 443 FRPREVVKHVLQTAAASLQK-ILM-LEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKLYVVPEPPFAK 519 (1002)
Q Consensus 443 ~~l~~li~~v~~~~~~~~~k-~i~-l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G-~I~I~v~~~~~~~~~~ 519 (1002)
+++...+..++..+...+.+ ... +..++ +..+.+|..|+.++.||+-|+|+||+||+|+| .|++.+...
T Consensus 300 inft~fl~~ii~R~e~~~~~e~~~~~vR~~-p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~~------- 371 (459)
T COG5002 300 INFTAFLNEIINRFEMILKKETIARFVRDI-PKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQR------- 371 (459)
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHhcC-CCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEeee-------
Confidence 99999999988876655332 222 23333 45567899999999999999999999999985 677766321
Q ss_pred chhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEec
Q 039716 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDT 599 (1002)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 599 (1002)
..|+.++|+|.
T Consensus 372 ---------------------------------------------------------------------~~~v~iSI~D~ 382 (459)
T COG5002 372 ---------------------------------------------------------------------ETWVEISISDQ 382 (459)
T ss_pred ---------------------------------------------------------------------CcEEEEEEccC
Confidence 22799999999
Q ss_pred CCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCC
Q 039716 600 GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668 (1002)
Q Consensus 600 GiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~ 668 (1002)
|.|||.+++++||++||+++...+++.|||||||||+|.||+.|||.||++|..|+||||+|+||+...
T Consensus 383 G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~ 451 (459)
T COG5002 383 GLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGE 451 (459)
T ss_pred CCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999653
No 10
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=100.00 E-value=3.4e-46 Score=465.63 Aligned_cols=343 Identities=20% Similarity=0.275 Sum_probs=253.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhccCcEEEEec-ccccEEEeeccCCCCCcccccCCCchhccCccchhhhhHHHHHHHHh
Q 039716 208 SPVEELSQILKRADNFLHFVLQNAPVVMGHQD-KELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEK 286 (1002)
Q Consensus 208 ~~~~~~~~~l~~~~~~l~~il~~~p~~i~~~d-~~~~~~~~~~~~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~ 286 (1002)
.+...+.+.++.++.+.+.+++++|+++...| .++++.++|..+. .++|.....-+ .........++..
T Consensus 329 ~p~~~l~~~L~~~~~l~~~Ii~~lp~Gilv~D~~~~~Ii~~N~aA~-----~ll~~~~l~~i-----~~~~~~~~~~i~~ 398 (894)
T PRK10618 329 RPTESMSHELRILRALNEEIVSNLPLGLLVYDFESNRTVISNKIAD-----HLLPHLNLQKI-----TTMAEQHQGVIQA 398 (894)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhCCceEEEEECCCCeEEEEhHHHH-----HHhCccchhhH-----HHHHHhcchhhhh
Confidence 35566777899999999999999999999999 5678888876532 23332111000 0000000111111
Q ss_pred CCCcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 287 GLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEE 366 (1002)
Q Consensus 287 g~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~ 366 (1002)
.. .+. .+.+... .......+.+.+..|++..+...+++.+.+++++ +.
T Consensus 399 ~i------------~~~-~~eir~~---~~~~~~~~~l~~l~d~~~~~~~~~~L~~a~~~le----------------~~ 446 (894)
T PRK10618 399 TI------------NNE-LYEIRMF---RSQLAPRTQLFLLRDQDREVLVNKKLQQAQREYE----------------KN 446 (894)
T ss_pred hc------------cCc-eeEEEEe---eccccCceEEEEEeehHHHHHHHHHHHHHHHHHH----------------HH
Confidence 00 010 0111110 1111123556778898876554443332221111 11
Q ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHH
Q 039716 367 TMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446 (1002)
Q Consensus 367 ~~~~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~ 446 (1002)
...+++|+++|||||||||++|.|++++|.....++++++++..+..++++|..+|+++++++|+++|.+.+...+|++.
T Consensus 447 ~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~~~~~l~~~~~~L~ 526 (894)
T PRK10618 447 QQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLETQDWKPEQELFSLQ 526 (894)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccceeECHH
Confidence 11234899999999999999999999999887778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhh
Q 039716 447 EVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQK 525 (1002)
Q Consensus 447 ~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~ 525 (1002)
+++++++..+...+. +++.+...+....+..+.+|+.+|+|||.||++||+|||+.|.|.|.+.....
T Consensus 527 ~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~I~I~v~~~~~----------- 595 (894)
T PRK10618 527 DLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQDES----------- 595 (894)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEccC-----------
Confidence 999999988776554 66777666655556678999999999999999999999999998887743210
Q ss_pred hhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCc
Q 039716 526 SKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605 (1002)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~ 605 (1002)
...++.|+|.|||+|||+
T Consensus 596 --------------------------------------------------------------~~~~l~I~V~DtG~GI~~ 613 (894)
T PRK10618 596 --------------------------------------------------------------SPDRLTIRILDTGAGVSI 613 (894)
T ss_pred --------------------------------------------------------------CCcEEEEEEEECCCCCCH
Confidence 012588999999999999
Q ss_pred CcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 606 e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
+.+++||+||++.+.. .+..+|+||||+|||+||+.|||+|+|+|.+|+||+|+|+||+.
T Consensus 614 e~l~~IFePF~t~~~~-~~~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 614 KELDNLHFPFLNQTQG-DRYGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred HHHHHhcCccccCCCC-CCCCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 9999999999986542 34457999999999999999999999999999999999999974
No 11
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=1e-43 Score=448.51 Aligned_cols=365 Identities=23% Similarity=0.311 Sum_probs=289.3
Q ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeee
Q 039716 364 TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNT-KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAK 442 (1002)
Q Consensus 364 ~e~~~~~k~fla~iSHELRTPL~~I~g~~elL~~~-~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~ 442 (1002)
++.....++|+++|||||||||++|.|+++++... ..+...+++++.|..+++++..+|++++++++...+. ..+
T Consensus 444 ~~rl~~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~~~----~~~ 519 (828)
T PRK13837 444 ARRLEAVGTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAFGRKGERN----TKP 519 (828)
T ss_pred HHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CcE
Confidence 33344456899999999999999999999987643 3345778899999999999999999999999976543 457
Q ss_pred cCHHHHHHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCcccch
Q 039716 443 FRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEG 521 (1002)
Q Consensus 443 ~~l~~li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~~~ 521 (1002)
+++.+++.+++..+.....+++.+....... +..+.+|+.+|.|||.||++||+||++. |.|.|++.........
T Consensus 520 ~~l~~ll~~~~~~~~~~~~~~i~l~~~~~~~-~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~--- 595 (828)
T PRK13837 520 FDLSELVTEIAPLLRVSLPPGVELDFDQDQE-PAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPK--- 595 (828)
T ss_pred EcHHHHHHHHHHHHHHHccCCcEEEEEeCCC-CceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeeccccc---
Confidence 9999999999887776555666666555443 4468999999999999999999999865 6777776542110000
Q ss_pred hhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCC
Q 039716 522 LKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGI 601 (1002)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGi 601 (1002)
....+ ......++.|+|.|+|+
T Consensus 596 -----------------------------------------------------~~~~~-----~~~~~~~v~i~V~D~G~ 617 (828)
T PRK13837 596 -----------------------------------------------------VLSHG-----VLPPGRYVLLRVSDTGA 617 (828)
T ss_pred -----------------------------------------------------ccccc-----cCCCCCEEEEEEEECCC
Confidence 00000 00112368899999999
Q ss_pred CCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCCCCCCCCCCCCccc
Q 039716 602 GIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDDLS 681 (1002)
Q Consensus 602 GI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~~~~~~~~~~~~l~ 681 (1002)
||+++.+++||+|||+.+. +|+||||+|||++|+.|||+|+++|.+|+||+|+|+||........ +.
T Consensus 618 GI~~e~~~~iFe~F~~~~~------~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~----~~--- 684 (828)
T PRK13837 618 GIDEAVLPHIFEPFFTTRA------GGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVA----PQ--- 684 (828)
T ss_pred CCCHHHHHHhhCCcccCCC------CCCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCC----cc---
Confidence 9999999999999997532 7999999999999999999999999999999999999974211000 00
Q ss_pred cccccCCcccccccccccccccccccccccCCcccccccccccccccccccccCccccccCCCCCcccccccchhhhccH
Q 039716 682 DMADQDSVTDDVTAGFFQFQPRTLGSLFSSNGTSRSKKLLPNSIGFASAHKVNGFSETSYSFPSNNRQKETAPLEDACSV 761 (1002)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1002)
T Consensus 685 -------------------------------------------------------------------------------- 684 (828)
T PRK13837 685 -------------------------------------------------------------------------------- 684 (828)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhCCCCCCCCCCCCCCcchhhcccccccccccccccCCCCCccchhhhhHHHhhcccCCCchhhhhhccCCCccc
Q 039716 762 AEVAETLSEPESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICEMQEKPDRIS 841 (1002)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (1002)
. ..
T Consensus 685 -----------~--~~---------------------------------------------------------------- 687 (828)
T PRK13837 685 -----------A--FF---------------------------------------------------------------- 687 (828)
T ss_pred -----------c--cC----------------------------------------------------------------
Confidence 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcC--CCcEEEEcCCCCCCCHH
Q 039716 842 QSPSSSSAEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ--NYDLILMDVCMPVMDGL 919 (1002)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~--~~DlIlmDi~MP~mdG~ 919 (1002)
.... .....+.+||||||++.++..+...|...||.+..+.++.+|++.+... .||+||+ .||.|+|+
T Consensus 688 -----~~~~---~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~ 757 (828)
T PRK13837 688 -----GPGP---LPRGRGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEE 757 (828)
T ss_pred -----CCcc---cCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHH
Confidence 0000 0002345899999999999999999999999999999999999998754 4899999 79999999
Q ss_pred HHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHh
Q 039716 920 KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999 (1002)
Q Consensus 920 e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~ 999 (1002)
++++.|+.. .+.+|||++|++........++.+| ++||.||++..+|...|.+
T Consensus 758 ~l~~~l~~~--------------------------~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~ 810 (828)
T PRK13837 758 QAAAALHAA--------------------------APTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRT 810 (828)
T ss_pred HHHHHHHhh--------------------------CCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHH
Confidence 999999852 3568999999999999999999999 9999999999999999987
Q ss_pred hc
Q 039716 1000 YF 1001 (1002)
Q Consensus 1000 ~l 1001 (1002)
++
T Consensus 811 ~l 812 (828)
T PRK13837 811 AL 812 (828)
T ss_pred HH
Confidence 64
No 12
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-44 Score=439.63 Aligned_cols=534 Identities=32% Similarity=0.430 Sum_probs=328.5
Q ss_pred HHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHH
Q 039716 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452 (1002)
Q Consensus 373 fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v 452 (1002)
|+++++||||+||++ |+...+..+..+.+++.++.....++..++.++++++|.+++++|.+.+...+|++..++..+
T Consensus 224 ~~~~~sHeir~p~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l~~ll~~~ 301 (786)
T KOG0519|consen 224 FLATLSHEIRTPLNG--GMLGGLSDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDLRTLLNFV 301 (786)
T ss_pred hcccccceeeccccc--CcceEEeccccchHHHHHHHHHhhhccccchhHHHhhcccccccccceeeeeecchHhhhhhh
Confidence 999999999999998 777777788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhhhhhhc
Q 039716 453 LQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQS 531 (1002)
Q Consensus 453 ~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~~~~~ 531 (1002)
++.+..... +...+....+...|..+.+|..+++||+.|+++||||||..|.+.+++.............
T Consensus 302 ~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i~~~~~~~~~~~~~~~~l--------- 372 (786)
T KOG0519|consen 302 ISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHLEESVIAREELSESNDVL--------- 372 (786)
T ss_pred hhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecccccceEEEEEEeehhcchhhHHH---------
Confidence 988776655 5566666666667888999999999999999999999999999988887655433221110
Q ss_pred chhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhh-
Q 039716 532 ATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT- 610 (1002)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~- 610 (1002)
...+.+.+...........- ..++ ........+.... ......+.+.|+|.||+......
T Consensus 373 --~~~~~e~~~~~~~~~~~~~~---~~~~-------~~~~~~~~i~~~~-------~l~~~~~~~~~~~~~i~~~~~~~~ 433 (786)
T KOG0519|consen 373 --LRAKEEAHMAGKARIDFLQK---MSHA-------MRAPRHNIISLLS-------LLLQDIVLSPDSGLEIQTVMRSSN 433 (786)
T ss_pred --HhhhhhhhhccchhhhHHHH---hccc-------cccccccccccch-------hhHhheEeccCCceeEehhhhhhh
Confidence 00000000000000000000 0000 0000000000000 01123466899999999999988
Q ss_pred hhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCCCCCCCCCCCCc-cc---ccccc
Q 039716 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVSPIEENSDDPDD-LS---DMADQ 686 (1002)
Q Consensus 611 IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~~~~~~~~~~~~-l~---~~~~~ 686 (1002)
+|.+|.++..+.++.++|+|+|+.||+.++++|+|.+.+.+....|++|+|.+++..........+... .. ++...
T Consensus 434 ~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 513 (786)
T KOG0519|consen 434 VFTSLIQADPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGM 513 (786)
T ss_pred HHHHHhccccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcch
Confidence 999999999999999999999999999999999999999999999999999999865432222111111 00 00000
Q ss_pred CCcccccccc---cccccccccccccccCCcccccccccccccc---cccccccCccccccCCCCCcccccccchhhhcc
Q 039716 687 DSVTDDVTAG---FFQFQPRTLGSLFSSNGTSRSKKLLPNSIGF---ASAHKVNGFSETSYSFPSNNRQKETAPLEDACS 760 (1002)
Q Consensus 687 ~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (1002)
.+...+...+ .+++.+..++........ ............ .......... .. ....+...
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~~s~ 579 (786)
T KOG0519|consen 514 LALLIDTKLGREQIFQVLAELLGISVDVSLS-LSLAFWFLDLSLSDLEVCKQIEDNE------------EG-SNNGDISS 579 (786)
T ss_pred hhhhhccccCcceeEEEEecccCcccccccc-chhhhhhcccccccchheEEeeecc------------cc-ccCCCcch
Confidence 0000000000 112211111100000000 000000000000 0000000000 00 00000000
Q ss_pred HHHHHhhhCC--------CCCCCCCCCCCCcchhhcccccccccccccccCCCCCccchhhhhHHHhhcccCCCchhhhh
Q 039716 761 VAEVAETLSE--------PESSFSHSPEPENETEVSRGKQCHVETTSWFQNPATESTSHSEANREMIQTSKTNEPQKICE 832 (1002)
Q Consensus 761 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1002)
.......... ...+...++... .... ...++..+... .......+-
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~~~----------------~~~~~s~~~ 633 (786)
T KOG0519|consen 580 SNPLHKSLRDLTSKLSSGSGLSLALCPENS--QLME--------GNIGLVPSSDG----------------LPKSPSLCL 633 (786)
T ss_pred hhhhhhccccchhhcccccccccccchhhH--Hhhh--------ccccccccccc----------------CCccHHHHH
Confidence 0000000000 000000000000 0000 00000000000 000000000
Q ss_pred hccCCC---cccCCCCCCC---CCCCCCCCCCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHH-cCCCc
Q 039716 833 MQEKPD---RISQSPSSSS---AEVPETKPKPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ-CQNYD 905 (1002)
Q Consensus 833 ~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~-~~~~D 905 (1002)
...... ......+... ..........+++|||||||++|+++.+.||+++|+.++.+.+|.||+++++ .+.||
T Consensus 634 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~~~~y~ 713 (786)
T KOG0519|consen 634 EACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYD 713 (786)
T ss_pred HhhccccccccccccCCCcccccCccccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCCCCccc
Confidence 000000 0000000000 0001222346789999999999999999999999999999999999999998 78899
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 906 LILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 906 lIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
+||||++||+|||+|++++||+.+. .++|||||||++.++..++|++.|||+||+
T Consensus 714 ~ifmD~qMP~mDG~e~~~~irk~~~-------------------------~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~ 768 (786)
T KOG0519|consen 714 VIFMDLQMPEMDGYEATREIRKKER-------------------------WHLPIVALTADADPSTEEECLEVGMDGYLS 768 (786)
T ss_pred EEEEEcCCcccchHHHHHHHHHhhc-------------------------CCCCEEEEecCCcHHHHHHHHHhCCceEEc
Confidence 9999999999999999999998652 579999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhc
Q 039716 986 KPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 986 KP~~~~~L~~~l~~~l 1001 (1002)
|||+.+.|..+|.+++
T Consensus 769 KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 769 KPFTLEKLVKILREFL 784 (786)
T ss_pred ccccHHHHHHHHHHHh
Confidence 9999999999999986
No 13
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-37 Score=362.32 Aligned_cols=218 Identities=32% Similarity=0.520 Sum_probs=189.5
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCC--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNT--KLDRE-QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~--~l~~~-~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~ 447 (1002)
..|+++|||||||||++|+|.++.|... .++++ +.+++..|...+++|..+|++|||++|+++|.+++...+..+.+
T Consensus 661 saLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~~~~veE 740 (890)
T COG2205 661 SALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLDWVLVEE 740 (890)
T ss_pred HHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccchhhHHH
Confidence 4799999999999999999999988653 45555 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCe-eEEEEEecCCCCcccchhhhhh
Q 039716 448 VVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK-VGIKLYVVPEPPFAKEGLKQKS 526 (1002)
Q Consensus 448 li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~-I~I~v~~~~~~~~~~~~~~~~~ 526 (1002)
++.+++..+...... ..+...++.+++ .+..|...|.|||.|||.||+||+|.|. |.|.+....
T Consensus 741 vVg~Al~r~~k~~~~-~~i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~------------- 805 (890)
T COG2205 741 VVGEALQRLRKRFTG-HKIVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVER------------- 805 (890)
T ss_pred HHHHHHHHhhhhcCC-ceEEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEec-------------
Confidence 999988876655432 225556667766 5899999999999999999999999875 777765321
Q ss_pred hhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcC
Q 039716 527 KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606 (1002)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e 606 (1002)
..+.|+|.|+|+|||++
T Consensus 806 ---------------------------------------------------------------~~v~~~V~DeGpGIP~~ 822 (890)
T COG2205 806 ---------------------------------------------------------------ENVVFSVIDEGPGIPEG 822 (890)
T ss_pred ---------------------------------------------------------------ceEEEEEEeCCCCCChh
Confidence 24889999999999999
Q ss_pred cHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCC
Q 039716 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668 (1002)
Q Consensus 607 ~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~ 668 (1002)
.+++||++||+...... ..|+|||||||+.||+.|||+|++.+.+++|++|+|+||....
T Consensus 823 ~~~~IFD~F~r~~~~~~--~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 823 ELERIFDKFYRGNKESA--TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred HHHHhhhhhhcCCCCCC--CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCC
Confidence 99999999999876433 6799999999999999999999999999999999999998654
No 14
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=372.17 Aligned_cols=330 Identities=23% Similarity=0.317 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcc
Q 039716 215 QILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAK 291 (1002)
Q Consensus 215 ~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~ 291 (1002)
+.+++...+++.+++++|.+++..|.++++.++|..+ .|+..++++|++..+++..... . ..+.... ..
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~i~~~d~~g~i~~~N~~a~~l~g~~~~~~~g~~~~~~~~~~~~------~-~~~~~~~-~~ 162 (430)
T PRK11006 91 RELGNLIKRFRSGAESLPDAVVLTTEEGNIFWCNGLAQQLLGFRWPEDNGQNILNLLRYPEF------T-QYLKTRD-FS 162 (430)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEcCCCceeHHHHHHHHHhCCCChHhCCCcHHHHhcCHHH------H-HHHHhcc-cC
Confidence 3455556778899999999999999999999998754 5777788899988877653211 1 1122211 11
Q ss_pred eeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 292 REITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAK 371 (1002)
Q Consensus 292 ~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~~~~~k 371 (1002)
....+. .....++.+...|..+ + +++.+..|||+..+.++ ..+
T Consensus 163 ~~~~~~--~~~~~~~~~~~~~~~~--~---~~~~~~~dit~~~~~e~------------------------------~~~ 205 (430)
T PRK11006 163 RPLTLV--LNNGRHLEIRVMPYTE--G---QLLMVARDVTQMHQLEG------------------------------ARR 205 (430)
T ss_pred CCeEEE--cCCCCEEEEEEEEcCC--C---cEEEEEehhhHHHHHHH------------------------------HHH
Confidence 122222 2334455566666542 2 24567899997532211 013
Q ss_pred HHHHHhhhccccHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHH
Q 039716 372 QMLATMSHEIRSPLTGVVSMAEILSNTKL-DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK 450 (1002)
Q Consensus 372 ~fla~iSHELRTPL~~I~g~~elL~~~~l-~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~ 450 (1002)
+|++++||||||||++|.|++++|..... ++....+++.|..++++|..++++++++++++.+........+++..+++
T Consensus 206 ~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~~~~~~~~~~~~~~~~~ 285 (430)
T PRK11006 206 NFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTIDLNEKVDVPMMLR 285 (430)
T ss_pred HHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCccCHHHHHH
Confidence 69999999999999999999999876543 45567789999999999999999999999999887766667888888888
Q ss_pred HHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC-eeEEEEEecCCCCcccchhhhhhhhh
Q 039716 451 HVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKLYVVPEPPFAKEGLKQKSKAY 529 (1002)
Q Consensus 451 ~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G-~I~I~v~~~~~~~~~~~~~~~~~~~~ 529 (1002)
.+...+.....+.+.+....++. ..+.+|+.+|.|||.||++||+||+++| .|.|.+...
T Consensus 286 ~l~~~~~~~~~~~~~i~~~~~~~--~~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~~~----------------- 346 (430)
T PRK11006 286 VLEREAQTLSQGKHTITFEVDNS--LKVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRV----------------- 346 (430)
T ss_pred HHHHHHHHHhcCCcEEEEecCCC--ceEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc-----------------
Confidence 77665554445555565555444 3588999999999999999999999865 565554311
Q ss_pred hcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHh
Q 039716 530 QSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALP 609 (1002)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~ 609 (1002)
...+.|+|.|+|+|||++.++
T Consensus 347 -----------------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~ 367 (430)
T PRK11006 347 -----------------------------------------------------------PQGAEFSVEDNGPGIAPEHIP 367 (430)
T ss_pred -----------------------------------------------------------CCEEEEEEEEcCCCCCHHHHH
Confidence 113789999999999999999
Q ss_pred hhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 610 TLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 610 ~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
+||+|||+.+...+++.+|+||||+|||++|+.|||+|+++|.+|+||+|+|+||...
T Consensus 368 ~if~~f~~~~~~~~~~~~G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 425 (430)
T PRK11006 368 RLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPERL 425 (430)
T ss_pred HhccCcccccCCCCCCCCCCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEechHh
Confidence 9999999987766667789999999999999999999999999999999999999753
No 15
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=100.00 E-value=5.8e-38 Score=372.71 Aligned_cols=360 Identities=16% Similarity=0.241 Sum_probs=249.1
Q ss_pred HHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEE
Q 039716 222 NFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFET 298 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~ 298 (1002)
..++.+++++|.+++..|.++++.++|..+ .|+++++++|++...+................+..+.+...++....
T Consensus 4 ~~~~~i~~~~~~~i~~~d~~g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (494)
T TIGR02938 4 EAYRQTVDQAPLAISITDLKANILYANDAFTRITGYTKEEIIGKNESVLSNHTTPPEVYQALWGSLAEQKPWAGKLLNRR 83 (494)
T ss_pred HHHHHHHHhCCceEEEECCCCcEEEEchhheeecCCCHHHHhCCCchhhcCCCCCHHHHHHHHHHHHhCCcccceeeccC
Confidence 467889999999999999999999998765 57788999999876655443333222223334444555444443333
Q ss_pred eecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHH------------------------------
Q 039716 299 ELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIA------------------------------ 348 (1002)
Q Consensus 299 ~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~------------------------------ 348 (1002)
..+...++.....|+++.+|.+.|+++++.|||++++.++++......++
T Consensus 84 ~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIt~~k~~e~~l~~~~~~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~ 163 (494)
T TIGR02938 84 KDGELYLAELTVAPVLNEAGETTHFLGMHRDITELHRLEQVVANQKLLIESVVDAAPVAFVLLDPTGRVILDNQEYKKLA 163 (494)
T ss_pred CCccchhhheeeEEEECCCCCEEEEEEehhhhhHHHHHHHHHHHHHHHHHHHHhcccceEEEEcCCCCEEEechhHHHhh
Confidence 33333444577889999999999999999999998877655432211000
Q ss_pred --------------------------------------------------------------------------------
Q 039716 349 -------------------------------------------------------------------------------- 348 (1002)
Q Consensus 349 -------------------------------------------------------------------------------- 348 (1002)
T Consensus 164 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
T TIGR02938 164 TDLRVKEPAHTVLDLLREAWREALAENWPQQLAFSNREARFDRGGGRPARWLSCTGSVIGMESDCADSFFCAAEQPYLLL 243 (494)
T ss_pred chhhhhHHHHHHHHHhhHHhhhhhhhcchhhhccccceeeeccCCCceeeEEEecCceEEeecchhhheeccCCCchhee
Confidence
Q ss_pred ------HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHH
Q 039716 349 ------VQKAKETELN-----KTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLD---REQRQLLGVMISS 414 (1002)
Q Consensus 349 ------~~~~~~~el~-----k~~~~~e~~~~~k~fla~iSHELRTPL~~I~g~~elL~~~~l~---~~~~~~l~~i~~s 414 (1002)
.+++.++++. ......+...+.+++++.++|||||||++|.|++++|.....+ +.....+..+...
T Consensus 244 ~~~DITe~k~~ee~l~~~al~~~~~~~~~~~~l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 323 (494)
T TIGR02938 244 TIADISNLREEQERARLSALQALMAEEERLEAIRETLSAAIHRLQGPMNLISAAISVLQRRGDDAGNPASAAMLQQALSA 323 (494)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH
Confidence 0000000000 0000011122234678899999999999999999998764332 3334444444444
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHHHHHHHHH-hhcceeccccCCCCCeeEEccHHHHHHHHHHHH
Q 039716 415 GDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLI 493 (1002)
Q Consensus 415 ~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~~~~~~~~-~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLl 493 (1002)
+..+...+.++++. .......+|++..++++++..+...+ .+++.+.......++ .+.+|+.+|+|||.||+
T Consensus 324 ~~~~~~~l~~~~~~------~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~d~~~l~~vl~Nl~ 396 (494)
T TIGR02938 324 GREHMEALRQVIPQ------SPQEIVVPVNLNQILRDVITLSTPRLLAAGIVVDWQPAATLP-AILGRELQLRSLFKALV 396 (494)
T ss_pred HHHHHHHHHHhhcc------CcccccccccHHHHHHHHHHHhHHHHHhCCCEEEEecCCCCC-eeecCHHHHHHHHHHHH
Confidence 44444444444332 23344578999999999988776544 466777766665555 58899999999999999
Q ss_pred hhhhhcCCCCe---eEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCC
Q 039716 494 SNAIKFTPEGK---VGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDD 570 (1002)
Q Consensus 494 sNAIKfT~~G~---I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (1002)
+||+||++.|. ..|.+....
T Consensus 397 ~NAik~~~~~~~~~~~i~i~~~~--------------------------------------------------------- 419 (494)
T TIGR02938 397 DNAIEAMNIKGWKRRELSITTAL--------------------------------------------------------- 419 (494)
T ss_pred HHHHHHhhccCCCcceEEEEEEe---------------------------------------------------------
Confidence 99999997652 223332110
Q ss_pred CCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEE
Q 039716 571 DPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650 (1002)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~ 650 (1002)
...++.|+|.|||+|||++.+.+||+|||+++... ++||||||+|||+||+.|||+|+|+
T Consensus 420 -----------------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---~~G~GlGL~i~~~iv~~~gG~i~~~ 479 (494)
T TIGR02938 420 -----------------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---RKHIGMGLSVAQEIVADHGGIIDLD 479 (494)
T ss_pred -----------------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---CCCCcccHHHHHHHHHHcCCEEEEE
Confidence 11257899999999999999999999999876432 5799999999999999999999999
Q ss_pred eecCCceEEEEEEeC
Q 039716 651 SKVHCGSTFTFILPY 665 (1002)
Q Consensus 651 S~~g~GTtF~~~LP~ 665 (1002)
|.+|+||+|+|+||+
T Consensus 480 s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 480 DDYSEGCRIIVEFRV 494 (494)
T ss_pred ECCCCCEEEEEEecC
Confidence 999999999999995
No 16
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-35 Score=309.72 Aligned_cols=337 Identities=23% Similarity=0.324 Sum_probs=256.3
Q ss_pred HHHhccCcEEEEecccccEEEeecc---CCCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCc-ceeEEEEEeec
Q 039716 226 FVLQNAPVVMGHQDKELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPA-KREITFETELF 301 (1002)
Q Consensus 226 ~il~~~p~~i~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~-~~e~~~~~~~~ 301 (1002)
.++++.+-.+...|.++++.|+|.. |++.+..-+.|.+..++++.. .....+.+++.+.+.+. .+++++. ..+
T Consensus 11 ~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~g--s~ll~ll~q~~~~~~~~~~~~v~l~-~~g 87 (363)
T COG3852 11 AILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPFG--SLLLSLLDQVLERGQPVTEYEVTLV-ILG 87 (363)
T ss_pred hHHhccCCceEEEcCCCcEEecCHHHHHHHHHHHHHHhcCChHHHcCCC--cHHHHHHHHHHHhcCCcccceeeee-ecC
Confidence 5788888888888999999999864 445555667788777777643 23455677888888764 4566665 566
Q ss_pred CceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039716 302 GSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEI 381 (1002)
Q Consensus 302 ~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~~~~~k~fla~iSHEL 381 (1002)
....+..++.|+-...|.+. ..+.-+....+ +..++.. ...+...+.++.++||||
T Consensus 88 ~~~~v~~~v~~v~~~~G~vl---le~~~~~~~~r-------idre~~q--------------~a~~~a~~~L~r~LAHEI 143 (363)
T COG3852 88 RSHIVDLTVAPVPEEPGSVL---LEFHPRDMQRR-------LDREQTQ--------------HAQQRAVKGLVRGLAHEI 143 (363)
T ss_pred ccceEEEEEeeccCCCCeEE---EEechhHHHhH-------hhHHHHH--------------HHHHHHHHHHHHHHHHHh
Confidence 77788899999988777543 22222222111 1111000 011112356899999999
Q ss_pred ccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHHHHHHHHHh
Q 039716 382 RSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ 461 (1002)
Q Consensus 382 RTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~~~~~~~~~ 461 (1002)
||||.+|.|.++||...-.++..++|.+.|...++|+.+|++.+.-|+-- ......+++++++++.|.........
T Consensus 144 KNPL~GiRGAAQLLe~~lpd~~~~~lt~lIieE~DRl~~LVDRme~~~~~----rp~~r~~~NIH~VLerV~~lv~~e~~ 219 (363)
T COG3852 144 KNPLGGIRGAAQLLERALPDEALRELTQLIIEEADRLRNLVDRLEVLGPQ----RPGDRVPVNIHEVLERVRALVEAEFA 219 (363)
T ss_pred cCcccchhhHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCcccccchHHHHHHHHHHHHhcccC
Confidence 99999999999999987777779999999999999999999999766643 23345689999999999999888888
Q ss_pred hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCC---C--CeeEEEEEecCCCCcccchhhhhhhhhhcchhhh
Q 039716 462 KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTP---E--GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAV 536 (1002)
Q Consensus 462 k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~---~--G~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1002)
.++.+..++++.+| .+++|+.+|.|++.||+.||..+-. . |.|.++.+. ......
T Consensus 220 ~~i~l~rdYDPSLP-~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~--~~q~~i----------------- 279 (363)
T COG3852 220 DNVRLIRDYDPSLP-EVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRT--GIQLTI----------------- 279 (363)
T ss_pred CceEEeecCCCCCc-cccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecc--ceEEEc-----------------
Confidence 89999999999998 5999999999999999999999975 3 666554321 100000
Q ss_pred hhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhcc
Q 039716 537 KEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYM 616 (1002)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~ 616 (1002)
........+.++|.|||+|||++.+++||.||.
T Consensus 280 -----------------------------------------------~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~V 312 (363)
T COG3852 280 -----------------------------------------------AGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMV 312 (363)
T ss_pred -----------------------------------------------cCceeEeeeeeEEecCCCCCChHHhhhcccccc
Confidence 000123347788999999999999999999998
Q ss_pred CCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 617 QVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 617 q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
++ +.+||||||+|+++||..|||.|.++|.|| .|+|++.+|...
T Consensus 313 s~------r~~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 313 SG------REGGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred cc------CCCCccccHHHHHHHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 64 457999999999999999999999999998 699999999754
No 17
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=100.00 E-value=3e-34 Score=322.93 Aligned_cols=324 Identities=28% Similarity=0.377 Sum_probs=255.8
Q ss_pred HHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEE
Q 039716 219 RADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREIT 295 (1002)
Q Consensus 219 ~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~ 295 (1002)
+..+.++.+++++|.+++..|.++++.++|..+ .|+++++++|++..+++... .....+..+.. ...+.
T Consensus 3 ~~~~~l~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~-------~~~~~l~~~~~-~~~~~ 74 (333)
T TIGR02966 3 ALLSRFRAAAQALPDAVVVLDEEGQIEWCNPAAERLLGLRWPDDLGQRITNLIRHP-------EFVEYLAAGRF-SEPLE 74 (333)
T ss_pred hHHHHHHHHHHhCcCcEEEECCCCcEEEEcHHHHHHhCCChHHHcCCcHHHHccCH-------HHHHHHHhccc-CCCeE
Confidence 345678899999999999999999999999865 57778889999888776432 12334444333 22344
Q ss_pred EEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 296 FETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLA 375 (1002)
Q Consensus 296 ~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~~~~~k~fla 375 (1002)
+....+...++.+...|+.+.. ++.+..|||++++.++. ..+|++
T Consensus 75 ~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~dit~~~~~~~~------------------------------~~~~~~ 119 (333)
T TIGR02966 75 LPSPINSERVLEIRIAPYGEEQ-----KLLVARDVTRLRRLEQM------------------------------RRDFVA 119 (333)
T ss_pred eecCCCCceEEEEEEEEcCCCc-----eEEEEeCchHHHHHHHH------------------------------HHHHHH
Confidence 4434556677778888887543 56678999975432110 125899
Q ss_pred HhhhccccHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHH
Q 039716 376 TMSHEIRSPLTGVVSMAEILSNT--KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL 453 (1002)
Q Consensus 376 ~iSHELRTPL~~I~g~~elL~~~--~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~ 453 (1002)
.++|||||||++|.+++++|... ..++...+++..|..+++++..++++++++++++.+.......++++.+++..++
T Consensus 120 ~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 199 (333)
T TIGR02966 120 NVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPALLDHLR 199 (333)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCHHHHHHHHH
Confidence 99999999999999999988654 3455677889999999999999999999999999988888889999999999998
Q ss_pred HHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCcccchhhhhhhhhhc
Q 039716 454 QTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQKSKAYQS 531 (1002)
Q Consensus 454 ~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~~~~~~~~~~~~~ 531 (1002)
..+..... +++.+.... ..+..+.+|+..|.+||.||+.||+||++. +.|.|.+...
T Consensus 200 ~~~~~~~~~~~i~i~~~~--~~~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~~------------------- 258 (333)
T TIGR02966 200 DEAEALSQGKNHQITFEI--DGGVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRRD------------------- 258 (333)
T ss_pred HHHHHHHHHcCcEEEEcC--CCCceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEEc-------------------
Confidence 88776554 446666555 224468999999999999999999999875 5566654321
Q ss_pred chhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhh
Q 039716 532 ATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTL 611 (1002)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~I 611 (1002)
...+.|.|.|+|+||+++.++++
T Consensus 259 ---------------------------------------------------------~~~~~i~i~d~G~gi~~~~~~~i 281 (333)
T TIGR02966 259 ---------------------------------------------------------GGGAEFSVTDTGIGIAPEHLPRL 281 (333)
T ss_pred ---------------------------------------------------------CCEEEEEEEecCCCCCHHHHhhh
Confidence 01377899999999999999999
Q ss_pred hhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEE
Q 039716 612 FRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663 (1002)
Q Consensus 612 F~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~L 663 (1002)
|+|||+.+...+...+|+||||+||+.+++.|||+|++.|.+++||+|+++|
T Consensus 282 f~~~~~~~~~~~~~~~g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 282 TERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred ccCceecCcccccCCCCCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 9999987665555667999999999999999999999999999999999975
No 18
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=100.00 E-value=2.2e-34 Score=328.22 Aligned_cols=335 Identities=22% Similarity=0.284 Sum_probs=244.8
Q ss_pred HHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcc-eeEEEE
Q 039716 222 NFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAK-REITFE 297 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~-~e~~~~ 297 (1002)
..++.+++++|.+++..|.++++.++|..+ .|+..++++|++..++++.... ........+..+.... .++.+.
T Consensus 7 ~~~~~il~~~~~gi~~~d~~~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 84 (348)
T PRK11073 7 PDAGQILNSLINSILLLDDDLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSL--NIELMRESLQAGQGFTDNEVTLV 84 (348)
T ss_pred chHHHHHhcCcCeEEEECCCCeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCcchh--hHHHHHHHHHcCCcccccceEEE
Confidence 456789999999999999999999998764 5778888999999888765322 1233344555554322 233232
Q ss_pred EeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039716 298 TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATM 377 (1002)
Q Consensus 298 ~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~~~~~k~fla~i 377 (1002)
..+...++.+...|+. . .++++...|+|++.+.++++.+.. +....++|++.+
T Consensus 85 -~~g~~~~~~~~~~~~~--~---~~~~~~~~dit~~~~~~~~~~~~~---------------------~~~~~~~~~~~i 137 (348)
T PRK11073 85 -IDGRSHILSLTAQRLP--E---GMILLEMAPMDNQRRLSQEQLQHA---------------------QQVAARDLVRGL 137 (348)
T ss_pred -ECCceEEEEEEEEEcc--C---ceeEEEEechhHHHHHHHHHHHHH---------------------HHHHHHHHHHhh
Confidence 2344556667777876 2 345667889998765433322110 001124799999
Q ss_pred hhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHHHHHH
Q 039716 378 SHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAA 457 (1002)
Q Consensus 378 SHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~~~~~ 457 (1002)
||||||||++|.|++++|.+...++...+++..+..+++++..++++++.+++... ...+++..+++.+...+.
T Consensus 138 aHelr~pL~~i~~~~~~l~~~~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~~~------~~~~~l~~~~~~~~~~~~ 211 (348)
T PRK11073 138 AHEIKNPLGGLRGAAQLLSKALPDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGT------HVTESIHKVAERVVQLVS 211 (348)
T ss_pred hHhhcChHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC------CccccHHHHHHHHHHHHh
Confidence 99999999999999999887666677888999999999999999999998766432 245688888888777666
Q ss_pred HHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcC-C-CCeeEEEEEecCCCCcccchhhhhhhhhhcchhh
Q 039716 458 ASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFT-P-EGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDA 535 (1002)
Q Consensus 458 ~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT-~-~G~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (1002)
....+.+.+.....+..+ .+.+|+.+|.||+.||++||+||+ + .|.|.|.+.......
T Consensus 212 ~~~~~~i~i~~~~~~~~~-~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~------------------- 271 (348)
T PRK11073 212 LELPDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLT------------------- 271 (348)
T ss_pred hhccCCcEEEEecCCCCC-ceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccc-------------------
Confidence 555555666665555544 588999999999999999999997 3 455655442110000
Q ss_pred hhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhc
Q 039716 536 VKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKY 615 (1002)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF 615 (1002)
. ........+.+.|.|+|+||+++.++++|+||
T Consensus 272 -----------------------------------------~------~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~ 304 (348)
T PRK11073 272 -----------------------------------------L------HGERYRLAARIDIEDNGPGIPPHLQDTLFYPM 304 (348)
T ss_pred -----------------------------------------c------CCccCCceEEEEEEeCCCCCCHHHHhhccCCc
Confidence 0 00001123678999999999999999999999
Q ss_pred cCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeC
Q 039716 616 MQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665 (1002)
Q Consensus 616 ~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~ 665 (1002)
|+.+ .+|+||||+|||++|+.|||+|+++|.+| ||+|+|+||+
T Consensus 305 ~~~~------~~g~GlGL~i~~~iv~~~gG~i~~~s~~~-~~~f~i~lP~ 347 (348)
T PRK11073 305 VSGR------EGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVYLPI 347 (348)
T ss_pred ccCC------CCCccCCHHHHHHHHHHcCCeEEEEecCC-ceEEEEEEec
Confidence 8642 46999999999999999999999999988 5999999996
No 19
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=1.2e-34 Score=334.84 Aligned_cols=220 Identities=30% Similarity=0.492 Sum_probs=189.0
Q ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEee
Q 039716 369 RAKQMLATMSHEIRSPLTGVVSMAEILSNTKLD-------REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA 441 (1002)
Q Consensus 369 ~~k~fla~iSHELRTPL~~I~g~~elL~~~~l~-------~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~ 441 (1002)
..++|++++||||||||++|.+++++|.....+ +..+++++.+..++++|..+|++++++++.+.+...+...
T Consensus 150 ~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~~~~~~~~~~~~~~ 229 (380)
T PRK09303 150 FKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEVGRTRWEALRFNPQ 229 (380)
T ss_pred HHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeccc
Confidence 345899999999999999999999999754322 2367788999999999999999999999999999999999
Q ss_pred ecCHHHHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCccc
Q 039716 442 KFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAK 519 (1002)
Q Consensus 442 ~~~l~~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~ 519 (1002)
++++.+++.+++..+..... +.+.+..+++.+.| .+.+|+.+|.|||.|||+||+||++. |.|.|.+...
T Consensus 230 ~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~-~v~~d~~~l~qvl~NLl~NAik~~~~~~~I~i~~~~~------- 301 (380)
T PRK09303 230 KLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLP-SVYADQERIRQVLLNLLDNAIKYTPEGGTITLSMLHR------- 301 (380)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCC-eEEeCHHHHHHHHHHHHHHHHhcCCCCceEEEEEEec-------
Confidence 99999999999988876554 56777777766655 58999999999999999999999986 4565554210
Q ss_pred chhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEec
Q 039716 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDT 599 (1002)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 599 (1002)
...++.|+|.|+
T Consensus 302 --------------------------------------------------------------------~~~~v~i~V~D~ 313 (380)
T PRK09303 302 --------------------------------------------------------------------TTQKVQVSICDT 313 (380)
T ss_pred --------------------------------------------------------------------CCCEEEEEEEEc
Confidence 112588999999
Q ss_pred CCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 600 GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 600 GiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
|+|||++.+++||+|||+.+. ....+|+||||+||++||+.|||+|+++|.+|+||+|+|+||..
T Consensus 314 G~GI~~~~~~~iF~pf~~~~~--~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 314 GPGIPEEEQERIFEDRVRLPR--DEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPVY 378 (380)
T ss_pred CCCCCHHHHHHHccCceeCCC--CCCCCcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEecC
Confidence 999999999999999998865 34567999999999999999999999999999999999999974
No 20
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=100.00 E-value=1.2e-32 Score=335.33 Aligned_cols=346 Identities=23% Similarity=0.378 Sum_probs=271.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhC
Q 039716 211 EELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKG 287 (1002)
Q Consensus 211 ~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g 287 (1002)
..+.+.++.++.+++.+++++|.+++..|.++++.++|..+ .|+.+++++|++..+++++.. .........+..+
T Consensus 251 ~~~~~~l~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~ 328 (607)
T PRK11360 251 NNLAQALRETRSLNELILESIADGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYSELFPPNT--PFASPLLDTLEHG 328 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCeEEEEcCCCCEEEECHHHHHHhCCChHHhcCCcHHHHcCCch--hHHHHHHHHHhcC
Confidence 34456677778889999999999999999999999998754 577888999999988887432 1222334445544
Q ss_pred CCcc-eeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 288 LPAK-REITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEE 366 (1002)
Q Consensus 288 ~~~~-~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~ 366 (1002)
.... .++.+... .+...+.+...|+++.+|.+.|+++++.|||++++.++++.+..+
T Consensus 329 ~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~g~~~~~i~~~~Dite~~~~e~~l~~~~~--------------------- 386 (607)
T PRK11360 329 TEHVDLEISFPGR-DRTIELSVSTSLLHNTHGEMIGALVIFSDLTERKRLQRRVARQER--------------------- 386 (607)
T ss_pred CCccceEEEEEcC-CCcEEEEEEEeeEEcCCCCEEEEEEEEeechHHHHHHHHHHHHHH---------------------
Confidence 4332 23333333 344457788899999999999999999999998776555432211
Q ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHH
Q 039716 367 TMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446 (1002)
Q Consensus 367 ~~~~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~ 446 (1002)
.....+|++.++|||||||++|.|+++++.....+.+..++++.+...++++..++++++++++..... ..++++.
T Consensus 387 ~~~l~~~~~~~~hel~~~l~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~ 462 (607)
T PRK11360 387 LAALGELVAGVAHEIRNPLTAIRGYVQIWRQQTSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRESQ----WQPVSLN 462 (607)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCc----cceecHH
Confidence 111347999999999999999999999987765667788999999999999999999999999876543 3578999
Q ss_pred HHHHHHHHHHHHH-HhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCcccchhhh
Q 039716 447 EVVKHVLQTAAAS-LQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQ 524 (1002)
Q Consensus 447 ~li~~v~~~~~~~-~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~~~~~~ 524 (1002)
.++..+...+... ..+.+.+....+++.+ .+.+|+..|.|++.||+.||+||+.. |.|.|++....
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~----------- 530 (607)
T PRK11360 463 ALVEEVLQLFQTAGVQARVDFETELDNELP-PIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYS----------- 530 (607)
T ss_pred HHHHHHHHHHHHhhhccCcEEEEEcCCCCC-eEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcC-----------
Confidence 9999988877654 3455666666655544 57889999999999999999999764 56666653210
Q ss_pred hhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCC
Q 039716 525 KSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIP 604 (1002)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~ 604 (1002)
+. .+.|+|.|+|+|||
T Consensus 531 ---------------------------------------------------------------~~-~~~i~v~D~G~G~~ 546 (607)
T PRK11360 531 ---------------------------------------------------------------DG-QVAVSIEDNGCGID 546 (607)
T ss_pred ---------------------------------------------------------------CC-EEEEEEEeCCCCCC
Confidence 00 17789999999999
Q ss_pred cCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 605 ENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 605 ~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
++.+.++|+||++.+ ..|+||||++|+++|+.|||+|+++|.+|+||+|+|+||..
T Consensus 547 ~~~~~~~f~~~~~~~------~~g~glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~ 602 (607)
T PRK11360 547 PELLKKIFDPFFTTK------AKGTGLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPIN 602 (607)
T ss_pred HHHHhhhcCCceeCC------CCCCchhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCC
Confidence 999999999999643 35899999999999999999999999999999999999984
No 21
>PRK13560 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-32 Score=345.39 Aligned_cols=355 Identities=17% Similarity=0.218 Sum_probs=241.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeecc----CCCCCcccccCCCchhccCccchhhhhHH------
Q 039716 210 VEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNH----FPSLHEEDILGKTDVEIFSGAGVKESQDF------ 279 (1002)
Q Consensus 210 ~~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~----~~~~~~e~iiGk~~~e~~~~~~~~~~~~~------ 279 (1002)
.+++++.|++++.+++.+++++|.+++..|.++++.++|+. +.|++.++++|++..++.+......+...
T Consensus 320 rk~~e~~L~~se~~l~~l~~~~~~~i~~~d~~g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~ 399 (807)
T PRK13560 320 RRAAERELLEKEDMLRAIIEAAPIAAIGLDADGNICFVNNNAAERMLGWSAAEVMGKPLPGMDPELNEEFWCGDFQEWYP 399 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccEEEEcCCCCEEEecCHHHHHHhCCCHHHHcCCCccccChhhhhhhhhchhhhcCC
Confidence 44556678888899999999999999999999999988653 56888899999987665443211110000
Q ss_pred -----------HHHHHHhCCCc-ceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHH
Q 039716 280 -----------KREVLEKGLPA-KREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEI 347 (1002)
Q Consensus 280 -----------~~~vl~~g~~~-~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el 347 (1002)
....+..+.+. ..++.+....++..++.++..|+++.+|.+.|++++..|||++++.++++.+.+..+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~p~~d~~g~~~~~~~~~~DITerk~~E~~L~~~~~~~ 479 (807)
T PRK13560 400 DGRPMAFDACPMAKTIKGGKIFDGQEVLIEREDDGPADCSAYAEPLHDADGNIIGAIALLVDITERKQVEEQLLLANLIV 479 (807)
T ss_pred cCCcchhhhhhHHHHHhcCCcccCceEEEEcCCCCeEEEEEEEeeeECCCCCEEEEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 11223444332 235555555566667778889999999999999999999999999887776542111
Q ss_pred HH---------------------------------------------------HHHHH----------------------
Q 039716 348 AV---------------------------------------------------QKAKE---------------------- 354 (1002)
Q Consensus 348 ~~---------------------------------------------------~~~~~---------------------- 354 (1002)
+. .....
T Consensus 480 e~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~~e~~~~~~~~~~~~~p~d~~~~~~~~~~~~~~g~~~~~~e~r~~~~dG 559 (807)
T PRK13560 480 ENSPLVLFRWKAEEGWPVELVSKNITQFGYEPDEFISGKRMFAAIIHPADLEQVAAEVAEFAAQGVDRFEQEYRILGKGG 559 (807)
T ss_pred hcCCceEEEEecCCCceEEEecchhhhcCCCHHHhhcccchHhhhcChhhHHHHHHHHHHHHhcCCccceeEEEEEcCCC
Confidence 00 00000
Q ss_pred -----------------------------HHHHHHH-HHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHH
Q 039716 355 -----------------------------TELNKTI-HITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQ 404 (1002)
Q Consensus 355 -----------------------------~el~k~~-~~~e~~~~~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~ 404 (1002)
++..+.- ++.+....+.+|+++|||||||||++|.|+++++.....++..
T Consensus 560 ~~~w~~~~~~~~~d~~G~~~~~~g~~~DITerK~aE~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~~ 639 (807)
T PRK13560 560 AVCWIDDQSAAERDEEGQISHFEGIVIDISERKHAEEKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEEA 639 (807)
T ss_pred CEEEEEecceeeeCCCCCEEEEEEEEechHHHHHHHHHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHHH
Confidence 0000000 0111122344899999999999999999999998877667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHH
Q 039716 405 RQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVL 483 (1002)
Q Consensus 405 ~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~ 483 (1002)
..++..+......+..+++.++.. ....++++..+++.+...+...+. ....+...+....+.....+..
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (807)
T PRK13560 640 KCAFAESQDRICAMALAHEKLYQS---------EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAI 710 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---------ccchhccHHHHHHHHHHHHHHHhccccCceEEEEecCcccccccccc
Confidence 777766666655665555554332 133568889999888877665443 2222333333332222345667
Q ss_pred HHHHHHHHHHhhhhhcCCC----CeeEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCC
Q 039716 484 RIRQILTNLISNAIKFTPE----GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKH 559 (1002)
Q Consensus 484 rL~QIL~NLlsNAIKfT~~----G~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1002)
.+.|||.||++||+||+.. |.|.|.+...
T Consensus 711 ~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~----------------------------------------------- 743 (807)
T PRK13560 711 PCGLIISELLSNALKHAFPDGAAGNIKVEIREQ----------------------------------------------- 743 (807)
T ss_pred chHHHHHHHHHHHHHhhccCCCCceEEEEEEEc-----------------------------------------------
Confidence 7899999999999999843 4555544210
Q ss_pred CCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHH
Q 039716 560 GEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQL 639 (1002)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~L 639 (1002)
...++.|+|+|||+|||++.. ...|+||||+|||+|
T Consensus 744 ----------------------------~~~~v~i~V~D~G~GI~~~~~----------------~~~~~gLGLai~~~i 779 (807)
T PRK13560 744 ----------------------------GDGMVNLCVADDGIGLPAGFD----------------FRAAETLGLQLVCAL 779 (807)
T ss_pred ----------------------------CCCEEEEEEEeCCCcCCcccc----------------ccccCCccHHHHHHH
Confidence 012588999999999998731 123789999999999
Q ss_pred HHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 640 VELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 640 ve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
|+.|||+|+|+|. +||||+|+||+.
T Consensus 780 v~~~gG~I~v~S~--~Gt~F~i~lP~~ 804 (807)
T PRK13560 780 VKQLDGEIALDSR--GGARFNIRFPMS 804 (807)
T ss_pred HHHcCCEEEEEcC--CceEEEEEecCC
Confidence 9999999999994 799999999974
No 22
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-31 Score=302.17 Aligned_cols=350 Identities=21% Similarity=0.272 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeecc---CCCCCcccccCCCchh
Q 039716 190 QALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNH---FPSLHEEDILGKTDVE 266 (1002)
Q Consensus 190 ~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e 266 (1002)
-.|...+|.|+.+|..|+.++++....+++++.|++.+|...+.++...|.++++.-+|.. +.+.+..+++|.+...
T Consensus 338 g~Ls~~FN~M~~eL~~qq~~l~~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~lsa 417 (712)
T COG5000 338 GRLSKAFNKMTEQLSSQQEALERAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQSLSA 417 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeEEEEcCCCeeEeecchHHHHhcCChhHhhcchhhh
Confidence 4578899999999999999999999999999999999999999999999999999988753 3344444455544333
Q ss_pred ccCccchhhhhHHHHHHHHhC----CCcc-eeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHH
Q 039716 267 IFSGAGVKESQDFKREVLEKG----LPAK-REITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMA 341 (1002)
Q Consensus 267 ~~~~~~~~~~~~~~~~vl~~g----~~~~-~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~ 341 (1002)
+ .....+|+..+ .+.. .++.+ .+.+..+++.+........+| -|+++++.|||+.+.+++.
T Consensus 418 ~---------ap~~~~vf~~~~a~~~~~~~~ev~~-~r~g~~rtl~Vq~t~~~~d~~--~gyVvt~DDITdLV~AQRs-- 483 (712)
T COG5000 418 I---------APELEEVFAEAGAAARTDKRVEVKL-AREGEERTLNVQATREPEDNG--NGYVVTFDDITDLVIAQRS-- 483 (712)
T ss_pred h---------hhHHHHHHHHhhhhcCCCccceeec-ccCCCceeeeeeeeecccccC--CceEEEecchHHHHHHHHH--
Confidence 2 22233444433 2222 23333 234566777766654443322 3788899999998765332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhCC---CCCH---HHHHHHHHHHHHH
Q 039716 342 KLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNT---KLDR---EQRQLLGVMISSG 415 (1002)
Q Consensus 342 ~l~~el~~~~~~~~el~k~~~~~e~~~~~k~fla~iSHELRTPL~~I~g~~elL~~~---~l~~---~~~~~l~~i~~s~ 415 (1002)
..+++.+..++||||||||.|.-.++-|... ..++ ...++.++|.+..
T Consensus 484 --------------------------~AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV 537 (712)
T COG5000 484 --------------------------AAWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQV 537 (712)
T ss_pred --------------------------HHHHHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 2245677789999999999999999987642 2332 2467899999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhh
Q 039716 416 DLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISN 495 (1002)
Q Consensus 416 ~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsN 495 (1002)
..+.++|+++-+|+|+-. +..++.||++++.+++....... ..+.+......+ |....+|+..|.|+|.||+.|
T Consensus 538 ~dI~rMVdeF~afARmP~----p~~e~~dL~~ll~e~~~L~e~~~-~~i~f~~e~g~e-pl~~~~D~~~l~Qvf~NliKN 611 (712)
T COG5000 538 EDIKRMVDEFRAFARMPA----PKLEKSDLRALLKEVSFLYEIGN-DHIVFAAEFGGE-PLIGMADATLLGQVFGNLLKN 611 (712)
T ss_pred HHHHHHHHHHHHHhcCCC----CCCCcchHHHHHHHHHHHHhccC-CCeEEEeecCCC-ceeeecCHHHHHHHHHHHHHh
Confidence 999999999999999754 44567899999999877654332 345555555555 778888999999999999999
Q ss_pred hhhcCCC-----Ce-eEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCC
Q 039716 496 AIKFTPE-----GK-VGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHD 569 (1002)
Q Consensus 496 AIKfT~~-----G~-I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (1002)
|..+-.. +. -.|++...
T Consensus 612 A~EAi~~~~~~e~~~~~i~~~~~--------------------------------------------------------- 634 (712)
T COG5000 612 AAEAIEAVEAEERRTALIRVSLD--------------------------------------------------------- 634 (712)
T ss_pred HHHHhhhcccccCCcceEEEEEe---------------------------------------------------------
Confidence 9988532 10 01111110
Q ss_pred CCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEE
Q 039716 570 DDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649 (1002)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v 649 (1002)
.....+++.|.|||.|+|.+.+.++|+||.++ +.+||||||+|||+|+|-|||.|.+
T Consensus 635 -----------------~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTt------r~KGTGLGLAiVKkIvEeHGG~leL 691 (712)
T COG5000 635 -----------------DADGRIVVDVIDNGKGFPRENRHRALEPYVTT------REKGTGLGLAIVKKIVEEHGGRLEL 691 (712)
T ss_pred -----------------cCCCeEEEEEecCCCCCChHHhhhhccCceec------ccccccccHHHHHHHHHhcCCeEEe
Confidence 11124889999999999999999999999975 3469999999999999999999999
Q ss_pred Eeec-CCceEEEEEEeC
Q 039716 650 TSKV-HCGSTFTFILPY 665 (1002)
Q Consensus 650 ~S~~-g~GTtF~~~LP~ 665 (1002)
...+ -.|..+.+.||.
T Consensus 692 ~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 692 HNAPDFDGAMIRIKFPL 708 (712)
T ss_pred cCCCCCCCcEEEEEccc
Confidence 9884 349999999997
No 23
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=1.7e-30 Score=328.10 Aligned_cols=216 Identities=28% Similarity=0.453 Sum_probs=180.6
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNTK--LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~~--l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~l 448 (1002)
.+|++.+||||||||++|.|++++|.... ......+.+..+...+.++..+|+++|+++++++|.+.+...++++.++
T Consensus 665 ~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~~~~l~~~~~~L~el 744 (895)
T PRK10490 665 NALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSGGFNLRKEWLTLEEV 744 (895)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCHHHH
Confidence 47999999999999999999999886432 2233446788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC-eeEEEEEecCCCCcccchhhhhh
Q 039716 449 VKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKLYVVPEPPFAKEGLKQKS 526 (1002)
Q Consensus 449 i~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G-~I~I~v~~~~~~~~~~~~~~~~~ 526 (1002)
++.++..+..... +.+. ..++.+.+ .+.+|+.+|.|||.|||+||+||++.| .|.|.+...
T Consensus 745 i~~~l~~l~~~~~~~~i~--l~~~~~~~-~v~~D~~~L~qVL~NLL~NAik~s~~g~~I~I~~~~~-------------- 807 (895)
T PRK10490 745 VGSALQMLEPGLSGHPIN--LSLPEPLT-LIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVE-------------- 807 (895)
T ss_pred HHHHHHHHHHHhcCCCEE--EEcCCCCe-EEEECHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe--------------
Confidence 9999887765543 3333 34444444 589999999999999999999999875 566655321
Q ss_pred hhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcC
Q 039716 527 KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606 (1002)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e 606 (1002)
..++.|+|.|+|+|||++
T Consensus 808 --------------------------------------------------------------~~~v~I~V~D~G~GI~~e 825 (895)
T PRK10490 808 --------------------------------------------------------------GERLQLDVWDNGPGIPPG 825 (895)
T ss_pred --------------------------------------------------------------CCEEEEEEEECCCCCCHH
Confidence 114789999999999999
Q ss_pred cHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 607 ~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
.+++||+||++.+.. ...+|+||||+|||+|++.|||+|+++|.+|+||+|+|.||...
T Consensus 826 ~~~~IFepF~~~~~~--~~~~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 826 QEQLIFDKFARGNKE--SAIPGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLET 884 (895)
T ss_pred HHHHhcCCCccCCCC--CCCCCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECCC
Confidence 999999999986542 34469999999999999999999999999999999999999854
No 24
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.97 E-value=4.9e-30 Score=289.96 Aligned_cols=217 Identities=31% Similarity=0.454 Sum_probs=178.4
Q ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCH
Q 039716 369 RAKQMLATMSHEIRSPLTGVVSMAEILSNT---KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445 (1002)
Q Consensus 369 ~~k~fla~iSHELRTPL~~I~g~~elL~~~---~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l 445 (1002)
+.++|...+||+||+||+.|.+++++|... .++.+.++++..+.+.+.+|.+||+|++.||++......+. +.++
T Consensus 523 el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~l~--~td~ 600 (750)
T COG4251 523 ELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAPLQ--PTDV 600 (750)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCC--Ccch
Confidence 345799999999999999999999999754 57889999999999999999999999999999976655554 6778
Q ss_pred HHHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhh
Q 039716 446 REVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQ 524 (1002)
Q Consensus 446 ~~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~ 524 (1002)
.++++.++........ .++.+. +.+ +| .+.+|+.++.||+.||+.|||||...+.-.|.+.....
T Consensus 601 ~~vv~~vl~~l~~ri~dtgaei~--i~~-lp-~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r~---------- 666 (750)
T COG4251 601 QKVVDKVLLELSQRIADTGAEIR--IAP-LP-VVAADATQLGQVFQNLIANAIKFGGPENPDIEISAERQ---------- 666 (750)
T ss_pred HHHHHHHHHhcccccccccceEE--ecc-cc-eeecCHHHHHHHHHHHHhhheecCCCCCCceEEeeecc----------
Confidence 8999988877665443 333332 333 45 58899999999999999999999866533333321100
Q ss_pred hhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCC
Q 039716 525 KSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIP 604 (1002)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~ 604 (1002)
..-+.|.|.|+|+||+
T Consensus 667 ----------------------------------------------------------------ed~~t~sV~dng~Gi~ 682 (750)
T COG4251 667 ----------------------------------------------------------------EDEWTFSVRDNGIGID 682 (750)
T ss_pred ----------------------------------------------------------------CCceEEEecCCCCCcC
Confidence 0126789999999999
Q ss_pred cCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 605 ENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 605 ~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
+...++||..|.+... ..+|.||||||+|||+|++.|+|+|||+|.+|+|+||+|+||...
T Consensus 683 ~a~~~riF~iFqRl~s--~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~~ 743 (750)
T COG4251 683 PAYFERIFVIFQRLHS--RDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVGG 743 (750)
T ss_pred HHHHHHHHHHHHhcCc--hhhhcCCCccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecCC
Confidence 9999999999998764 347889999999999999999999999999999999999999864
No 25
>PRK10604 sensor protein RstB; Provisional
Probab=99.97 E-value=3.3e-29 Score=294.60 Aligned_cols=213 Identities=23% Similarity=0.334 Sum_probs=176.3
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHH
Q 039716 370 AKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449 (1002)
Q Consensus 370 ~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li 449 (1002)
.++|++++||||||||+.|.+.++++... ..+.. ..+.+..++|..++++++.+++++.+...+...++++.+++
T Consensus 212 ~~~l~~~vsHeLrtPL~~i~~~l~~l~~~--~~~~~---~~i~~~~~~l~~li~~ll~~~rl~~~~~~~~~~~~~l~~~l 286 (433)
T PRK10604 212 KKQLIDGIAHELRTPLVRLRYRLEMSDNL--SAAES---QALNRDIGQLEALIEELLTYARLDRPQNELHLSEPDLPAWL 286 (433)
T ss_pred HHHHHHHhhHhhcChHHHHHHHHHHhcCC--CcHHH---HHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCHHHHH
Confidence 35899999999999999999999988632 22222 23677889999999999999999999888888899999999
Q ss_pred HHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhhhh
Q 039716 450 KHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKA 528 (1002)
Q Consensus 450 ~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~~ 528 (1002)
.+++..+..... +.+.+... .. +..+.+|+..+.+|+.||++||+||+. |.|.|++....
T Consensus 287 ~~~i~~~~~~~~~~~i~~~~~--~~-~~~~~~d~~~l~~vl~NLl~NAik~~~-~~I~I~~~~~~--------------- 347 (433)
T PRK10604 287 STHLADIQAVTPEKTVRLDTP--HQ-GDYGALDMRLMERVLDNLLNNALRYAH-SRVRVSLLLDG--------------- 347 (433)
T ss_pred HHHHHHHHHHhhcCcEEEEec--CC-CceEecCHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEC---------------
Confidence 998877665432 34444332 22 335678999999999999999999985 67777664211
Q ss_pred hhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcH
Q 039716 529 YQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608 (1002)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l 608 (1002)
..+.|.|.|+|+|||++.+
T Consensus 348 -------------------------------------------------------------~~~~I~V~D~G~Gi~~e~~ 366 (433)
T PRK10604 348 -------------------------------------------------------------NQACLIVEDDGPGIPPEER 366 (433)
T ss_pred -------------------------------------------------------------CEEEEEEEEcCCCCCHHHH
Confidence 1378999999999999999
Q ss_pred hhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 609 ~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
++||+|||+.+....++.+|+||||+|||++++.|||+|+++|.+++||+|++.||...
T Consensus 367 ~~if~~f~r~~~~~~~~~~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 367 ERVFEPFVRLDPSRDRATGGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred hhcCCCCccCCCCCCCCCCCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 99999999988766667789999999999999999999999999999999999999864
No 26
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.96 E-value=3.9e-28 Score=293.19 Aligned_cols=306 Identities=23% Similarity=0.291 Sum_probs=202.3
Q ss_pred HHHHHHHHhccCcEEEEecccccEEEeeccCCC---C---CcccccCCCchhccCccchhhhhHHHHHHHHhCCCcce-e
Q 039716 221 DNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPS---L---HEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKR-E 293 (1002)
Q Consensus 221 ~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~~~---~---~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~-e 293 (1002)
...++.++++++.+|...|.++++.++|..+.. + .+.+.+|+...++++. .....++..+.+... +
T Consensus 220 ~~~~~~il~~~~~gIi~~D~~g~I~~~N~~a~~llg~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 292 (542)
T PRK11086 220 FEQRQAMLQSIKEGVIAVDDRGEVTLINDEAKRLFNYKKGLEDDPLGTDVESWMPV-------SRLKEVLRTGTPRRDEE 292 (542)
T ss_pred HHHHHHHHHHhcCcEEEECCCCeEEEEhHHHHHHhCCCcCCcccccCCcHHHhCCc-------hhHHHHHhcCCCccceE
Confidence 344578999999999999999999999986432 2 2345667766665542 123456666655432 2
Q ss_pred EEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 294 ITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM 373 (1002)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~~~~~k~f 373 (1002)
.. .+...+.+...|+.+ +|.+.|++.+++|+|+..+.++++..+. ...++
T Consensus 293 ~~-----~~g~~~~~~~~pi~~-~g~~~g~v~~~rDite~~~l~~~l~~~~------------------------~~~~~ 342 (542)
T PRK11086 293 IN-----INGRLLLTNTVPVRV-NGEIIGAIATFRDKTEVRQLAQRLDGMV------------------------NYADA 342 (542)
T ss_pred EE-----ECCEEEEEEEEEEeE-CCEEEEEEEEEEEchHHHHHHHHHHHHH------------------------HHHHH
Confidence 21 134566777789988 8999999999999998654433322111 11246
Q ss_pred HHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHH
Q 039716 374 LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL 453 (1002)
Q Consensus 374 la~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~ 453 (1002)
++.+||||||||++|.|++++... .+..+++..+ +......++++++..+ . ++ +..+ +.
T Consensus 343 l~~~sHel~npL~~I~g~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--------~~-~~~~---~~ 401 (542)
T PRK11086 343 LRAQSHEFMNKLHVILGLLHLKSY----DQLEDYILKT---ANNYQEEIGSLLGKIK--S--------PV-IAGF---LL 401 (542)
T ss_pred HHhhchhhcCHHHHHHHHHHhCch----HHHHHHHHHH---HHHHHHHHHHHHHhcc--C--------HH-HHHH---HH
Confidence 778999999999999999987432 2222333222 2222223333332111 0 00 0111 11
Q ss_pred HHHHHHHhhcceeccccCCCCCee-EEccHHHHHHHHHHHHhhhhhcCC---CCeeEEEEEecCCCCcccchhhhhhhhh
Q 039716 454 QTAAASLQKILMLEGDIADDVPIE-VIGDVLRIRQILTNLISNAIKFTP---EGKVGIKLYVVPEPPFAKEGLKQKSKAY 529 (1002)
Q Consensus 454 ~~~~~~~~k~i~l~~~i~~~~p~~-v~gD~~rL~QIL~NLlsNAIKfT~---~G~I~I~v~~~~~~~~~~~~~~~~~~~~ 529 (1002)
........+++.+.......++.. ...+...|.|||.||++||+||+. .|.|.|++...
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~----------------- 464 (542)
T PRK11086 402 GKISRARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLHYR----------------- 464 (542)
T ss_pred HHHHHHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEc-----------------
Confidence 111122234555554444433321 123445899999999999999963 35666655321
Q ss_pred hcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHh
Q 039716 530 QSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALP 609 (1002)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~ 609 (1002)
..++.|.|.|+|+||+++.++
T Consensus 465 -----------------------------------------------------------~~~~~i~V~D~G~gi~~~~~~ 485 (542)
T PRK11086 465 -----------------------------------------------------------NGWLHCEVSDDGPGIAPDEID 485 (542)
T ss_pred -----------------------------------------------------------CCEEEEEEEECCCCCCHHHHH
Confidence 114788999999999999999
Q ss_pred hhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 610 TLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 610 ~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
+||+||++. +.+|+||||+|||++|+.|||+|+++|.+|+||+|+|+||+.
T Consensus 486 ~iF~~~~~~------~~~g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~ 536 (542)
T PRK11086 486 AIFDKGYST------KGSNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWD 536 (542)
T ss_pred HHHhCCCcc------CCCCCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCC
Confidence 999999864 345999999999999999999999999999999999999975
No 27
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.96 E-value=2.4e-28 Score=290.62 Aligned_cols=213 Identities=22% Similarity=0.301 Sum_probs=176.0
Q ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHH
Q 039716 369 RAKQMLATMSHEIRSPLTGVVSMAEILSNTK-LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447 (1002)
Q Consensus 369 ~~k~fla~iSHELRTPL~~I~g~~elL~~~~-l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~ 447 (1002)
+.++|++++||||||||++|.++++.|.... .+.+ +....+.....++.++|++++++++.+++...+....+++..
T Consensus 265 ~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~~~~--~~~~~~~~~i~ri~~~i~~ll~~~~~~~~~~~~~~~~~~l~~ 342 (485)
T PRK10815 265 KYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQMSVE--QAEPIMLEQISRISQQIGYYLHRASMRSEHNLLSRELHSVAP 342 (485)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccceecHHH
Confidence 3457999999999999999999999886643 3322 334556778899999999999999999988888888999999
Q ss_pred HHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhh
Q 039716 448 VVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKS 526 (1002)
Q Consensus 448 li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~ 526 (1002)
+++.++..+..... +++.+...+.++ ..+.+|+..|.||+.||++||+||++++ |.|.+...
T Consensus 343 ll~~~~~~l~~~~~~~~i~i~~~~~~~--~~v~~d~~~l~~vl~NLi~NAik~~~~~-i~I~~~~~-------------- 405 (485)
T PRK10815 343 LLDNLTSALNKVYQRKGVNITLDISPE--ITFVGEKNDFMEVMGNVLDNACKYCLEF-VEISARQT-------------- 405 (485)
T ss_pred HHHHHHHHHHHHHHHCCcEEEEecCCC--cEEEeCHHHHHHHHHHHHHHHHHhcCCc-EEEEEEEe--------------
Confidence 99999888776543 566666665443 3578999999999999999999999753 44544211
Q ss_pred hhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcC
Q 039716 527 KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606 (1002)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e 606 (1002)
...+.|.|.|+|+||+++
T Consensus 406 --------------------------------------------------------------~~~v~I~V~D~G~GI~~e 423 (485)
T PRK10815 406 --------------------------------------------------------------DEHLHIVVEDDGPGIPES 423 (485)
T ss_pred --------------------------------------------------------------CCEEEEEEEECCCCcCHH
Confidence 114789999999999999
Q ss_pred cHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 607 ~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
.+++||+||++.+. ..+|+||||+||++||+.|||+|.++|.+++||+|++.||.+
T Consensus 424 ~~~~iF~~f~~~~~----~~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 424 KRELIFDRGQRADT----LRPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQ 479 (485)
T ss_pred HHHHHhCCcccCCC----CCCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCC
Confidence 99999999998643 235999999999999999999999999999999999999975
No 28
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.96 E-value=3.1e-28 Score=276.99 Aligned_cols=211 Identities=27% Similarity=0.410 Sum_probs=176.7
Q ss_pred HHHHHHHhhhccccHHHHHHHHHH---HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHH
Q 039716 370 AKQMLATMSHEIRSPLTGVVSMAE---ILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446 (1002)
Q Consensus 370 ~k~fla~iSHELRTPL~~I~g~~e---lL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~ 446 (1002)
.++|.+++||||+.||++|.++++ +|.+....++.++.+..|..=.+||-.+...|-.|++--.+. ..++.+.
T Consensus 384 LGQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~FArk~~~a----~~~v~l~ 459 (603)
T COG4191 384 LGQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKSFARKSRDA----AGPVSLR 459 (603)
T ss_pred HHHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCccc----cCCccHH
Confidence 358999999999999999999987 455666677888999999999999999999999999865443 4678899
Q ss_pred HHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCC---CCeeEEEEEecCCCCcccchh
Q 039716 447 EVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTP---EGKVGIKLYVVPEPPFAKEGL 522 (1002)
Q Consensus 447 ~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~---~G~I~I~v~~~~~~~~~~~~~ 522 (1002)
++|+.++..+...+. ....+..+.. +.++.|.+|+.||+|||.|||+||++++. ++.|.|.+...
T Consensus 460 ~ai~~Al~ll~~R~~~~~~~l~~~~~-~~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~---------- 528 (603)
T COG4191 460 EAIEGALELLRGRLRAAGVELELDLP-DAPLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQRE---------- 528 (603)
T ss_pred HHHHHHHHHHHHhhhccCceeeccCC-CCCceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEec----------
Confidence 999999988877664 3455555544 34568999999999999999999999974 46666655311
Q ss_pred hhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCC
Q 039716 523 KQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIG 602 (1002)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiG 602 (1002)
...+.|+|.|||+|
T Consensus 529 ------------------------------------------------------------------~~~v~l~VrDnGpG 542 (603)
T COG4191 529 ------------------------------------------------------------------GGQVVLTVRDNGPG 542 (603)
T ss_pred ------------------------------------------------------------------CCeEEEEEccCCCC
Confidence 11378999999999
Q ss_pred CCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeC
Q 039716 603 IPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665 (1002)
Q Consensus 603 I~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~ 665 (1002)
|+++.+.++|+|||+++.. ..|.||||+||+.|++-+||+|.+.+.++.|+.|++.||.
T Consensus 543 i~~e~~~~lFePF~TtK~~----~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~ 601 (603)
T COG4191 543 IAPEALPHLFEPFFTTKPV----GKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRR 601 (603)
T ss_pred CCHHHHHhhcCCccccCcc----cCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeec
Confidence 9999999999999987542 4599999999999999999999999999999999999984
No 29
>PRK10364 sensor protein ZraS; Provisional
Probab=99.96 E-value=1.4e-27 Score=282.86 Aligned_cols=216 Identities=29% Similarity=0.467 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeee
Q 039716 364 TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNT-KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAK 442 (1002)
Q Consensus 364 ~e~~~~~k~fla~iSHELRTPL~~I~g~~elL~~~-~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~ 442 (1002)
.++....++|++.+||||||||++|.|+++++... ....+.+++++.+...++++..++++++++++... ....+
T Consensus 231 ~~~l~~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~~----~~~~~ 306 (457)
T PRK10364 231 KEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPTH----LALQA 306 (457)
T ss_pred HHHHHHHHHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC----CcceE
Confidence 34444556899999999999999999999998754 33456678889999999999999999999998532 44567
Q ss_pred cCHHHHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCcccc
Q 039716 443 FRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAKE 520 (1002)
Q Consensus 443 ~~l~~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~~ 520 (1002)
+++.++++.++..+..... +++.+........+ .+.+|+.+|.|++.||++||+||++. |.|.|.+...
T Consensus 307 ~~l~~~l~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~~~-------- 377 (457)
T PRK10364 307 VDLNDLINHSLQLVSQDANSREIQLRFTANDTLP-EIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASES-------- 377 (457)
T ss_pred ecHHHHHHHHHHHHHHHHHhcCeEEEEEcCCCCc-eEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEe--------
Confidence 8999999999888776543 56777766655444 57899999999999999999999865 5676665321
Q ss_pred hhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecC
Q 039716 521 GLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTG 600 (1002)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG 600 (1002)
...+.|.|.|+|
T Consensus 378 --------------------------------------------------------------------~~~~~i~V~D~G 389 (457)
T PRK10364 378 --------------------------------------------------------------------GAGVKISVTDSG 389 (457)
T ss_pred --------------------------------------------------------------------CCeEEEEEEECC
Confidence 113789999999
Q ss_pred CCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 601 IGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 601 iGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
+|||++.++++|++|++.+ .+|+||||+|||++++.|||+|+++|.+|+||+|+++||..
T Consensus 390 ~Gi~~~~~~~if~~~~~~k------~~g~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~ 449 (457)
T PRK10364 390 KGIAADQLEAIFTPYFTTK------AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVN 449 (457)
T ss_pred CCCCHHHHHHHhCccccCC------CCCCcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCC
Confidence 9999999999999998643 45999999999999999999999999999999999999975
No 30
>PRK13559 hypothetical protein; Provisional
Probab=99.96 E-value=1.9e-27 Score=272.75 Aligned_cols=308 Identities=16% Similarity=0.161 Sum_probs=221.4
Q ss_pred HHHHHHHHHhccCcEEEEecc---cccEEEeecc---CCCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCccee
Q 039716 220 ADNFLHFVLQNAPVVMGHQDK---ELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKRE 293 (1002)
Q Consensus 220 ~~~~l~~il~~~p~~i~~~d~---~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e 293 (1002)
+...++.+++++|.+++..|. ++++.++|.. +.|++.++++|++...+..+.............+..+.+...+
T Consensus 41 ~~~~~~~~~e~~~~~i~i~D~~~~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 120 (361)
T PRK13559 41 SGRLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAATDPIAVAKIRAAIAAEREIVVE 120 (361)
T ss_pred hhhHHHHHHHhCCCcEEEecCCCCCCcEEEEchHHHHHhCCCHHHHcCCChhhhcCCCCCHHHHHHHHHHhccCCceEEE
Confidence 356677889999999999996 5678998876 4677788999999776654433333333444555555555444
Q ss_pred EEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 294 ITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQM 373 (1002)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~~~~~k~f 373 (1002)
+......+...++.....|+++.+|.+.|++++..|||++++.++..+ .+++|
T Consensus 121 ~~~~~~dG~~~~~~~~~~~i~d~~G~~~~~v~~~~DITerk~~e~~~~---------------------------~~~~l 173 (361)
T PRK13559 121 LLNYRKDGEPFWNALHLGPVYGEDGRLLYFFGSQWDVTDIRAVRALEA---------------------------HERRL 173 (361)
T ss_pred EEEEcCCCCEEEEEEEEEEEEcCCCCEEEeeeeeeehhcchhhHHHHH---------------------------HHHHH
Confidence 444444444455567788999999999999999999998765421100 01358
Q ss_pred HHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHH
Q 039716 374 LATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVL 453 (1002)
Q Consensus 374 la~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~ 453 (1002)
++.++||+||||++|.|+++++... .+..++++.+...+..|..+++++|+.++ ..++++.++++.++
T Consensus 174 ~~~l~H~~~n~L~~i~~~~~l~~~~---~~~~~~~~~i~~~~~~l~~~~~~ll~~~~---------~~~v~l~~~~~~~~ 241 (361)
T PRK13559 174 AREVDHRSKNVFAVVDSIVRLTGRA---DDPSLYAAAIQERVQALARAHETLLDERG---------WETVEVEELIRAQV 241 (361)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHHHHhccCC---------cCcccHHHHHHHHH
Confidence 8899999999999999999988632 23345778888999999999999987654 24688888888887
Q ss_pred HHHHHHHhhcceeccccCCCCCeeEEcc-HHHHHHHHHHHHhhhhhc---CC-CCeeEEEEEecCCCCcccchhhhhhhh
Q 039716 454 QTAAASLQKILMLEGDIADDVPIEVIGD-VLRIRQILTNLISNAIKF---TP-EGKVGIKLYVVPEPPFAKEGLKQKSKA 528 (1002)
Q Consensus 454 ~~~~~~~~k~i~l~~~i~~~~p~~v~gD-~~rL~QIL~NLlsNAIKf---T~-~G~I~I~v~~~~~~~~~~~~~~~~~~~ 528 (1002)
..+... ...+.... + +..+..+ ...|.|||.||++||+|| ++ .|.|.|.+....
T Consensus 242 ~~~~~~---~~~i~~~~-~--~~~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~--------------- 300 (361)
T PRK13559 242 APYAPR---ATRVAFEG-P--GIRLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSP--------------- 300 (361)
T ss_pred HhhcCC---CceEEEEC-C--CeeeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecC---------------
Confidence 655422 22222222 1 1223323 357999999999999999 43 477777652110
Q ss_pred hhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcH
Q 039716 529 YQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608 (1002)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l 608 (1002)
....+.+.|.|+|.|++++
T Consensus 301 -----------------------------------------------------------~~~~~~i~v~d~G~~~~~~-- 319 (361)
T PRK13559 301 -----------------------------------------------------------EGAGFRIDWQEQGGPTPPK-- 319 (361)
T ss_pred -----------------------------------------------------------CCCeEEEEEECCCCCCCCC--
Confidence 0114788999999997764
Q ss_pred hhhhhhccCCCccccCcCCCccccHHHHHHHHHH-hCCEEEEEeecCCceEEEEEEeCC
Q 039716 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL-MGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 609 ~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~-~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
..|+|+||+||+++++. |||+|++++. +.||+|+|+||..
T Consensus 320 -----------------~~~~g~Gl~i~~~~v~~~~gG~i~~~~~-~~G~~~~l~~P~~ 360 (361)
T PRK13559 320 -----------------LAKRGFGTVIIGAMVESQLNGQLEKTWS-DDGLLARIEIPSR 360 (361)
T ss_pred -----------------CCCCCcHHHHHHHHHHHHcCCeEEEEEc-CCeEEEEEEEeCC
Confidence 23889999999999997 9999999998 5699999999963
No 31
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.96 E-value=1.7e-27 Score=282.49 Aligned_cols=218 Identities=23% Similarity=0.406 Sum_probs=184.6
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK 450 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~ 450 (1002)
.+|++.+|||+||||+.|.+.++.+.+... ....+.+..+...+.++..++++++++++.+.+...+...++++.++++
T Consensus 241 ~~~~~~~shel~~pL~~i~~~~~~l~~~~~-~~~~~~l~~~~~~~~~l~~li~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 319 (466)
T PRK10549 241 RDFMADISHELRTPLAVLRGELEAIQDGVR-KFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGALAYRKTPVDLVPLLE 319 (466)
T ss_pred HHHHHHHhHHhCChHHHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCCHHHHHH
Confidence 479999999999999999999999876422 2234567788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCcccchhhhhhhh
Q 039716 451 HVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQKSKA 528 (1002)
Q Consensus 451 ~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~~~~~~~~~~ 528 (1002)
.++..+..... +.+.+...+++. ..+.+|+..+.||+.|||.||+||++. |.|.|.+...
T Consensus 320 ~~~~~~~~~~~~~~i~i~~~~~~~--~~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~~~---------------- 381 (466)
T PRK10549 320 VAGGAFRERFASRGLTLQLSLPDS--ATVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAEQR---------------- 381 (466)
T ss_pred HHHHHHHHHHHHCCcEEEEecCCC--cEEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc----------------
Confidence 99888776543 556666655443 357799999999999999999999976 5676665321
Q ss_pred hhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcH
Q 039716 529 YQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608 (1002)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l 608 (1002)
...+.|.|.|+|+|||++.+
T Consensus 382 ------------------------------------------------------------~~~~~i~V~D~G~Gi~~e~~ 401 (466)
T PRK10549 382 ------------------------------------------------------------DKTLRLTFADSAPGVSDEQL 401 (466)
T ss_pred ------------------------------------------------------------CCEEEEEEEecCCCcCHHHH
Confidence 11478999999999999999
Q ss_pred hhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 609 ~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
++||+|||+.+....+..+|+||||+||+++++.|||+|+++|.+++||+|+|.||+..
T Consensus 402 ~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 402 QKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred HHhccCcccCCCCcCCCCCCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 99999999987765566789999999999999999999999999999999999999864
No 32
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.96 E-value=1.9e-27 Score=272.29 Aligned_cols=210 Identities=25% Similarity=0.393 Sum_probs=164.7
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCH-HHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP-REVV 449 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l-~~li 449 (1002)
++|++++||||||||++|.++++++..... . ....+....+++..++++++++++.+..........+++ .+++
T Consensus 138 ~~~~~~~sHelrtPL~~i~~~~e~l~~~~~-~----~~~~~~~~~~~l~~~i~~ll~~~r~~~~~~~~~~~~~~l~~~~i 212 (356)
T PRK10755 138 RLFTADVAHELRTPLAGIRLHLELLEKQHH-I----DVAPLIARLDQMMHTVEQLLQLARAGQSFSSGHYQTVKLLEDVI 212 (356)
T ss_pred HHHHHHhhHhhcChHHHHHHHHHHHHhccc-h----hHHHHHHHHHHHHHHHHHHHHHHHcccccccccchhhhHHHHHH
Confidence 469999999999999999999998865322 1 233455667889999999999999876655555566776 7777
Q ss_pred HHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC-eeEEEEEecCCCCcccchhhhhhh
Q 039716 450 KHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKLYVVPEPPFAKEGLKQKSK 527 (1002)
Q Consensus 450 ~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G-~I~I~v~~~~~~~~~~~~~~~~~~ 527 (1002)
..++..+..... +.+.+.... ...+..+.+|+..+++|+.||++||+||+++| .|.|.+...
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~~~--------------- 276 (356)
T PRK10755 213 LPSQDELSEMLEQRQQTLLLPE-SAADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLSQE--------------- 276 (356)
T ss_pred HHHHHHHHHHHHHhCCeEEecc-CCCceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEEEc---------------
Confidence 776665554332 444444422 23345789999999999999999999999754 566655311
Q ss_pred hhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCc
Q 039716 528 AYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607 (1002)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~ 607 (1002)
...+.|.|.|+|+||+++.
T Consensus 277 -------------------------------------------------------------~~~~~i~V~D~G~Gi~~~~ 295 (356)
T PRK10755 277 -------------------------------------------------------------DGGAVLAVEDEGPGIDESK 295 (356)
T ss_pred -------------------------------------------------------------CCEEEEEEEECCCCCCHHH
Confidence 1137899999999999999
Q ss_pred HhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecC-CceEEEEEEeCC
Q 039716 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH-CGSTFTFILPYQ 666 (1002)
Q Consensus 608 l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g-~GTtF~~~LP~~ 666 (1002)
++++|++|++.+. +.+|+||||+||+++++.|||+|+++|.++ +||+|++.||..
T Consensus 296 ~~~if~~f~~~~~----~~~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~ 351 (356)
T PRK10755 296 CGELSKAFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKA 351 (356)
T ss_pred HHHhCCCeEeCCC----CCCCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCC
Confidence 9999999997642 356999999999999999999999999998 999999999964
No 33
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.95 E-value=2.1e-26 Score=278.82 Aligned_cols=308 Identities=18% Similarity=0.209 Sum_probs=210.3
Q ss_pred HHHHHHHhccCcEEEEecccccEEEeeccCC---CCCc--ccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEE
Q 039716 222 NFLHFVLQNAPVVMGHQDKELRYRFIYNHFP---SLHE--EDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITF 296 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~~~~~~~~~~~~---~~~~--e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~ 296 (1002)
..++.++++.+.++...|.++++.++|..+. ++.. ++++|++..+++++... ....... ......+.
T Consensus 222 ~~~~~il~~~~egii~~D~~g~I~~~N~~a~~ll~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~-~~~~~~~~- 293 (545)
T PRK15053 222 RQQEALFSSVYEGLIAVDPHGYITAINRNARKMLGLSSPGRQWLGKPIAEVVRPADF------FTEQIDE-KRQDVVAN- 293 (545)
T ss_pred HHHHHHHHHhCceEEEECCCCeEEeecHHHHHHhCCCCcchhhcCCcHHHhCCCchh------hhhhcCC-cccceEEE-
Confidence 4467788999999999999999999987653 4432 46899998888764311 1111111 11111111
Q ss_pred EEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 297 ETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLAT 376 (1002)
Q Consensus 297 ~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~~~~~k~fla~ 376 (1002)
.+...+.....|+.. .|.++|++.++.|+|+..+.+.++.+++. ..+.+..
T Consensus 294 ----~~~~~~~~~~~~i~~-~~~~~G~v~~~~d~te~~~l~~~l~~~~~------------------------~~e~l~~ 344 (545)
T PRK15053 294 ----FNGLSVIANREAIRS-GDDLLGAIISFRSKDEISTLNAQLTQIKQ------------------------YVESLRT 344 (545)
T ss_pred ----ECCEEEEEEeeeEEE-CCeEEEEEEEEEchHHHHHHHHHHHHHHH------------------------HHHHHHH
Confidence 123455667778765 56778999999999987654433322211 1134567
Q ss_pred hhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHHHHH
Q 039716 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456 (1002)
Q Consensus 377 iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~~~~ 456 (1002)
++||++|||++|.|++++- +..+.++.+...+..+..+++++...-+ ...+...+....
T Consensus 345 ~~he~~n~L~~i~g~l~~~-------~~~~~~~~i~~~s~~~~~l~~~l~~~~~--------------~~~~~~~l~~~~ 403 (545)
T PRK15053 345 LRHEHLNWMSTLNGLLQMK-------EYDRVLEMVQGESQAQQQLIDSLREAFA--------------DRQVAGLLFGKV 403 (545)
T ss_pred HHHHHhhhHHHHHHHHhhc-------hhhHHHHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHHHHHHH
Confidence 8999999999999987752 2234667777888888888888776422 122222232222
Q ss_pred HHHHhhcceeccccCCCC-CeeEEccHHHHHHHHHHHHhhhhhcC---CCC--eeEEEEEecCCCCcccchhhhhhhhhh
Q 039716 457 AASLQKILMLEGDIADDV-PIEVIGDVLRIRQILTNLISNAIKFT---PEG--KVGIKLYVVPEPPFAKEGLKQKSKAYQ 530 (1002)
Q Consensus 457 ~~~~~k~i~l~~~i~~~~-p~~v~gD~~rL~QIL~NLlsNAIKfT---~~G--~I~I~v~~~~~~~~~~~~~~~~~~~~~ 530 (1002)
.....+.+.+........ .....+|+..|.|||.||++||+||+ +.| .|.|.+..
T Consensus 404 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------------------- 464 (545)
T PRK15053 404 QRARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------------------- 464 (545)
T ss_pred HHHHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE-------------------
Confidence 333334444443332221 12346799999999999999999994 333 45444321
Q ss_pred cchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhh
Q 039716 531 SATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610 (1002)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~ 610 (1002)
....+.|.|.|+|+|||++.+++
T Consensus 465 ---------------------------------------------------------~~~~~~i~V~D~G~Gi~~~~~~~ 487 (545)
T PRK15053 465 ---------------------------------------------------------EGDDVVIEVADQGCGVPESLRDK 487 (545)
T ss_pred ---------------------------------------------------------CCCEEEEEEEeCCCCcCHHHHHH
Confidence 01147899999999999999999
Q ss_pred hhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 611 IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
||+|||+++. +..+|+||||+|||++|+.|||+|+++|.+|.||+|+|+||..
T Consensus 488 iF~~~~~tk~---~~~~g~GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~ 540 (545)
T PRK15053 488 IFEQGVSTRA---DEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKV 540 (545)
T ss_pred HhCCCCCCCC---CCCCCceeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCC
Confidence 9999997542 3456899999999999999999999999999999999999974
No 34
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.95 E-value=5.8e-27 Score=289.55 Aligned_cols=216 Identities=24% Similarity=0.372 Sum_probs=182.2
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHH
Q 039716 370 AKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449 (1002)
Q Consensus 370 ~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li 449 (1002)
.++|++.+|||+||||+.|.+.++.+.....+.+..++++.+..+++++..++++++++++++.+.......++++.+++
T Consensus 485 l~~~s~~lSHELrtPL~~I~~~le~L~~~~~~~~~~~~le~i~~~i~~L~~li~~l~~~arle~~~~~~~~~~~dl~~ll 564 (703)
T TIGR03785 485 LENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLERAREGTERLSMILNNMSEATRLEQAIQSAEVEDFDLSEVL 564 (703)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeecHHHHH
Confidence 45799999999999999999999999877777788889999999999999999999999999988777788899999999
Q ss_pred HHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC-eeEEEEEecCCCCcccchhhhhhh
Q 039716 450 KHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKLYVVPEPPFAKEGLKQKSK 527 (1002)
Q Consensus 450 ~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G-~I~I~v~~~~~~~~~~~~~~~~~~ 527 (1002)
+.++..+..... +.+.+.. ..+ +..+.+|+..|.|||.|||+||+||++.| .|.|.+...
T Consensus 565 ~~~i~~~~~~~~~~~i~l~i--~~~-~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~~~--------------- 626 (703)
T TIGR03785 565 SGCMQGYQMTYPPQRFELNI--PET-PLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLSQN--------------- 626 (703)
T ss_pred HHHHHHHHHHhhcCCEEEEe--cCC-CeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEEEc---------------
Confidence 999887765543 3344333 222 33688999999999999999999999764 565554321
Q ss_pred hhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCc
Q 039716 528 AYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607 (1002)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~ 607 (1002)
...+.|+|.|+|+||+++.
T Consensus 627 -------------------------------------------------------------~~~v~I~V~D~G~GI~~e~ 645 (703)
T TIGR03785 627 -------------------------------------------------------------KSHALLTVSNEGPPLPEDM 645 (703)
T ss_pred -------------------------------------------------------------CCEEEEEEEEcCCCCCHHH
Confidence 1147899999999999999
Q ss_pred HhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecC-CceEEEEEEe
Q 039716 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH-CGSTFTFILP 664 (1002)
Q Consensus 608 l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g-~GTtF~~~LP 664 (1002)
+++||+||++.+.......+|+||||+|||+||+.|||+|++.|.++ +|++|+|+||
T Consensus 646 ~~~IFe~F~t~~~~~~~~~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 646 GEQLFDSMVSVRDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred HHHHhCCCeecCCCCCCCCCCccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 99999999987654444456899999999999999999999999875 8999999998
No 35
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.95 E-value=1.9e-26 Score=272.14 Aligned_cols=215 Identities=26% Similarity=0.456 Sum_probs=180.2
Q ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHH
Q 039716 369 RAKQMLATMSHEIRSPLTGVVSMAEILSNTK-LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447 (1002)
Q Consensus 369 ~~k~fla~iSHELRTPL~~I~g~~elL~~~~-l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~ 447 (1002)
+.++|.+.+||||||||+++.+.++.+.... ..++..+++..+.....++..++++++.+++++.....+...++++.+
T Consensus 240 ~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 319 (457)
T TIGR01386 240 RLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLARADNGQLALERVRLDLAA 319 (457)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCHHH
Confidence 3457999999999999999999999875433 334556788888888999999999999999999988888888999999
Q ss_pred HHHHHHHHHHHHH-hhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCcccchhhhh
Q 039716 448 VVKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQK 525 (1002)
Q Consensus 448 li~~v~~~~~~~~-~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~~~~~~~ 525 (1002)
++..++..+.... ++.+.+... .. ..+.+|+..|.+++.||+.||+||++. |.|.|.+...
T Consensus 320 ~~~~~~~~~~~~~~~~~i~~~~~--~~--~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~~~------------- 382 (457)
T TIGR01386 320 ELAKVAEYFEPLAEERGVRIRVE--GE--GLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIERR------------- 382 (457)
T ss_pred HHHHHHHHHHHHHHhCCeEEEec--CC--ceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEEec-------------
Confidence 9999988776533 344444333 22 468899999999999999999999976 5677765321
Q ss_pred hhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCc
Q 039716 526 SKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605 (1002)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~ 605 (1002)
...+.|+|.|+|+|||+
T Consensus 383 ---------------------------------------------------------------~~~~~i~v~D~G~g~~~ 399 (457)
T TIGR01386 383 ---------------------------------------------------------------SDEVRVSVSNPGPGIPP 399 (457)
T ss_pred ---------------------------------------------------------------CCEEEEEEEeCCCCCCH
Confidence 11378999999999999
Q ss_pred CcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEe
Q 039716 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP 664 (1002)
Q Consensus 606 e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP 664 (1002)
+.+.++|+|||+.+...+.+.+|+||||+||+++++.|||+|++++ +++||+|++.||
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 400 EHLSRLFDRFYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred HHHHHhccccccCCcccCCCCCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 9999999999998876556678999999999999999999999999 999999999998
No 36
>PRK09835 sensor kinase CusS; Provisional
Probab=99.95 E-value=1.5e-26 Score=275.31 Aligned_cols=216 Identities=28% Similarity=0.447 Sum_probs=178.3
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHH
Q 039716 370 AKQMLATMSHEIRSPLTGVVSMAEILSNTK-LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448 (1002)
Q Consensus 370 ~k~fla~iSHELRTPL~~I~g~~elL~~~~-l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~l 448 (1002)
.++|++.+||||||||+.|.+.++.+.... ...+..+.+..+.....++..++++++++++.+.+.......++++.++
T Consensus 262 ~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~l~~~ 341 (482)
T PRK09835 262 QSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLDLADE 341 (482)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeecHHHH
Confidence 347999999999999999999999765433 2345566777888888999999999999999999888777889999999
Q ss_pred HHHHHHHHHHHH-hhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC-eeEEEEEecCCCCcccchhhhhh
Q 039716 449 VKHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKLYVVPEPPFAKEGLKQKS 526 (1002)
Q Consensus 449 i~~v~~~~~~~~-~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G-~I~I~v~~~~~~~~~~~~~~~~~ 526 (1002)
++.+...+.... .+.+.+... .. +..+.+|+.+|.||+.||+.||+||+++| .|.|.+...
T Consensus 342 i~~~~~~~~~~~~~~~~~~~~~--~~-~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~~~-------------- 404 (482)
T PRK09835 342 VGKVFDFFEAWAEERGVELRFV--GD-PCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQEV-------------- 404 (482)
T ss_pred HHHHHHHHHHHHhhCCEEEEEe--CC-CcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe--------------
Confidence 999888776544 344554433 22 34688999999999999999999999765 466665321
Q ss_pred hhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcC
Q 039716 527 KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606 (1002)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e 606 (1002)
...+.|+|.|+|+|||++
T Consensus 405 --------------------------------------------------------------~~~~~i~v~d~G~gi~~~ 422 (482)
T PRK09835 405 --------------------------------------------------------------DHQVQLVVENPGTPIAPE 422 (482)
T ss_pred --------------------------------------------------------------CCEEEEEEEECCCCcCHH
Confidence 013778999999999999
Q ss_pred cHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeC
Q 039716 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665 (1002)
Q Consensus 607 ~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~ 665 (1002)
.++++|+|||+.+....++.+|+||||+||+++++.|||+|+++|.+ +||+|+|.||.
T Consensus 423 ~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~i~~~~~g~i~~~s~~-~g~~~~i~lP~ 480 (482)
T PRK09835 423 HLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSDA-RGTRFVISLPR 480 (482)
T ss_pred HHHHHhCCcccCCCCCCCCCCCcchHHHHHHHHHHHCCCEEEEEECC-CcEEEEEEeeC
Confidence 99999999999876655566799999999999999999999999974 69999999995
No 37
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.95 E-value=5.1e-26 Score=269.15 Aligned_cols=215 Identities=26% Similarity=0.397 Sum_probs=175.1
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHH
Q 039716 370 AKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449 (1002)
Q Consensus 370 ~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li 449 (1002)
.++|++++||||||||++|.+..+++.....+. ..+..+...++++..+|++++.+++.+... .+....+++..++
T Consensus 243 ~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~~---~~~~~i~~~~~~l~~~i~~l~~~~~~~~~~-~~~~~~~~l~~~~ 318 (461)
T PRK09470 243 QQRLLSDISHELRTPLTRLQLATALLRRRQGES---KELERIETEAQRLDSMINDLLVLSRNQQKN-HLERETFKANSLW 318 (461)
T ss_pred HHHHHHhhhHhhCCHHHHHHHHHHHHhhccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccceecHHHHH
Confidence 357999999999999999999999886543332 245677889999999999999999987643 4566789999999
Q ss_pred HHHHHHHHHHH-hhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhhhh
Q 039716 450 KHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKA 528 (1002)
Q Consensus 450 ~~v~~~~~~~~-~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~~ 528 (1002)
++++....... ...+.+.....+ .+..+.+|+..|.+++.||+.||+||++ +.|.|.+...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~l~~~l~nli~NA~~~~~-~~i~i~~~~~---------------- 380 (461)
T PRK09470 319 SEVLEDAKFEAEQMGKSLTVSAPP-GPWPINGNPNALASALENIVRNALRYSH-TKIEVAFSVD---------------- 380 (461)
T ss_pred HHHHHHHHHHHHHCCCeEEEecCC-cceEEEECHHHHHHHHHHHHHHHHHhCC-CcEEEEEEEE----------------
Confidence 98887665433 244544444222 3457899999999999999999999986 4566655321
Q ss_pred hhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcH
Q 039716 529 YQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608 (1002)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l 608 (1002)
...+.|+|.|+|+||+++.+
T Consensus 381 ------------------------------------------------------------~~~~~i~V~D~G~Gi~~~~~ 400 (461)
T PRK09470 381 ------------------------------------------------------------KDGLTITVDDDGPGVPEEER 400 (461)
T ss_pred ------------------------------------------------------------CCEEEEEEEECCCCCCHHHH
Confidence 11478999999999999999
Q ss_pred hhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 609 ~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
+++|+|||+.+....+..+|+||||+||+++|+.|||++.+.|.+++||+|++.||+.
T Consensus 401 ~~if~~~~~~~~~~~~~~~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~ 458 (461)
T PRK09470 401 EQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLY 458 (461)
T ss_pred HHhcCCCccCCcccCCCCCCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCC
Confidence 9999999998766666678999999999999999999999999999999999999974
No 38
>PRK10337 sensor protein QseC; Provisional
Probab=99.95 E-value=2.8e-26 Score=270.89 Aligned_cols=212 Identities=21% Similarity=0.362 Sum_probs=174.5
Q ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHH
Q 039716 368 MRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDRE-QRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPR 446 (1002)
Q Consensus 368 ~~~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~-~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~ 446 (1002)
.+.++|++.+||||||||+.|.+.++.+.....+++ ...++..+...+.++..++++++.+++++.+.......++++.
T Consensus 235 ~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r~~~~~~~~~~~~~~l~ 314 (449)
T PRK10337 235 VRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLE 314 (449)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCHH
Confidence 344589999999999999999999988765444443 4568889999999999999999999999887666667789999
Q ss_pred HHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC-eeEEEEEecCCCCcccchhhh
Q 039716 447 EVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKLYVVPEPPFAKEGLKQ 524 (1002)
Q Consensus 447 ~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G-~I~I~v~~~~~~~~~~~~~~~ 524 (1002)
++++.++..+..... +.+.+....++. +..+.+|+..|.+++.||++||+||+++| .|.|.+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~------------- 380 (449)
T PRK10337 315 DLLQSAVMDIYHTAQQAGIDVRLTLNAH-PVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA------------- 380 (449)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCCC-CceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe-------------
Confidence 999998877665443 566666655433 34578999999999999999999999875 55554310
Q ss_pred hhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCC
Q 039716 525 KSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIP 604 (1002)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~ 604 (1002)
..++|.|+|+|||
T Consensus 381 -------------------------------------------------------------------~~i~i~D~G~Gi~ 393 (449)
T PRK10337 381 -------------------------------------------------------------------RNFTVRDNGPGVT 393 (449)
T ss_pred -------------------------------------------------------------------eEEEEEECCCCCC
Confidence 2478999999999
Q ss_pred cCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEE
Q 039716 605 ENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663 (1002)
Q Consensus 605 ~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~L 663 (1002)
++.++++|+|||+.+. ...+|+||||+||++++++|||+|+++|.+++|++|++.|
T Consensus 394 ~~~~~~if~~f~~~~~---~~~~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 394 PEALARIGERFYRPPG---QEATGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred HHHHHHhcccccCCCC---CCCCccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 9999999999998643 2346999999999999999999999999999999999875
No 39
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.94 E-value=8.1e-26 Score=265.76 Aligned_cols=205 Identities=24% Similarity=0.363 Sum_probs=164.2
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK 450 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~ 450 (1002)
+.|++++||||||||+.|.++++++... .....+.+....++|..++++++++.+.+.+ ....++++.+++.
T Consensus 230 ~~~~~~lsHeLrtPL~~i~~~~e~~~~~-----~~~~~~~i~~~~~~~~~~i~~~l~~~r~~~~---~~~~~~~l~~~~~ 301 (435)
T PRK09467 230 TLLMAGVSHDLRTPLTRIRLATEMMSEE-----DGYLAESINKDIEECNAIIEQFIDYLRTGQE---MPMEMADLNALLG 301 (435)
T ss_pred HHHHHHhhhhccchHHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---CCccccCHHHHHH
Confidence 4799999999999999999999877432 2234456778899999999999999987653 2356788999988
Q ss_pred HHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhhhhhh
Q 039716 451 HVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQ 530 (1002)
Q Consensus 451 ~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~~~~ 530 (1002)
+++.... .....+...+... +..+.+|+..|.+|+.||+.||+||+ .|.|.|.+...
T Consensus 302 ~~~~~~~---~~~~~i~~~~~~~-~~~~~~~~~~l~~il~NLl~NA~k~~-~~~i~i~~~~~------------------ 358 (435)
T PRK09467 302 EVIAAES---GYEREIETALQPG-PIEVPMNPIAIKRALANLVVNAARYG-NGWIKVSSGTE------------------ 358 (435)
T ss_pred HHHHHhh---hcCCeEEEecCCC-CceEEECHHHHHHHHHHHHHHHHHhC-CCeEEEEEEec------------------
Confidence 8876544 2223333333333 34789999999999999999999998 56676665321
Q ss_pred cchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhh
Q 039716 531 SATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPT 610 (1002)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~ 610 (1002)
...+.|+|.|+|+||+++.+++
T Consensus 359 ----------------------------------------------------------~~~~~i~V~D~G~Gi~~~~~~~ 380 (435)
T PRK09467 359 ----------------------------------------------------------GKRAWFQVEDDGPGIPPEQLKH 380 (435)
T ss_pred ----------------------------------------------------------CCEEEEEEEecCCCcCHHHHHH
Confidence 1137899999999999999999
Q ss_pred hhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 611 LFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 611 IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
+|+||++.+.. ++.+|+||||+||+++++.|||+|.+.|.+++|++|+++||..
T Consensus 381 ~~~~f~~~~~~--~~~~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 381 LFQPFTRGDSA--RGSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred hcCCcccCCCC--CCCCCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 99999987643 3457999999999999999999999999999999999999964
No 40
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.94 E-value=3.6e-25 Score=262.49 Aligned_cols=217 Identities=28% Similarity=0.467 Sum_probs=183.5
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHH
Q 039716 370 AKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449 (1002)
Q Consensus 370 ~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li 449 (1002)
..+|++.++||||||++.|.+.+++|......+...+++..+...++++..++++++.+++++.+.......++++.+++
T Consensus 256 ~~~~~~~~~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 335 (475)
T PRK11100 256 VEQYVQTLTHELKSPLAAIRGAAELLQEDPPPEDRARFTGNILTQSARLQQLIDRLLELARLEQRQELEVLEPVALAALL 335 (475)
T ss_pred HHHHHHHhhhhhcCcHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccceeccHHHHH
Confidence 35789999999999999999999998875445667789999999999999999999999999988777778899999999
Q ss_pred HHHHHHHHHHH-hhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCcccchhhhhhh
Q 039716 450 KHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQKSK 527 (1002)
Q Consensus 450 ~~v~~~~~~~~-~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~~~~~~~~~ 527 (1002)
+.++..+.... .+.+.+....+ +..+.+|...|.+|+.||+.||+||+.+ |.|.|++...
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~~~--------------- 397 (475)
T PRK11100 336 EELVEAREAQAAAKGITLRLRPD---DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAEVD--------------- 397 (475)
T ss_pred HHHHHHHHHHHHhCCceEEEeCC---CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc---------------
Confidence 99988776544 35566655543 4568899999999999999999999965 6777766421
Q ss_pred hhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCc
Q 039716 528 AYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607 (1002)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~ 607 (1002)
...+.++|.|+|+|||++.
T Consensus 398 -------------------------------------------------------------~~~~~i~i~D~G~Gi~~~~ 416 (475)
T PRK11100 398 -------------------------------------------------------------GEQVALSVEDQGPGIPDYA 416 (475)
T ss_pred -------------------------------------------------------------CCEEEEEEEECCCCCCHHH
Confidence 1137889999999999999
Q ss_pred HhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 608 l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
++++|++|++.... ....+|+||||+||+++++.|||+|.++|.++.||+|++.||..
T Consensus 417 ~~~i~~~~~~~~~~-~~~~~~~GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 417 LPRIFERFYSLPRP-ANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred HHHHHHHHccCCCC-CCCCCCcchhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 99999999976432 23457999999999999999999999999999999999999963
No 41
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.94 E-value=1.9e-25 Score=249.01 Aligned_cols=215 Identities=40% Similarity=0.621 Sum_probs=174.7
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-eeeEeeecCHHHH
Q 039716 370 AKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGV-MKLEAAKFRPREV 448 (1002)
Q Consensus 370 ~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~-~~l~~~~~~l~~l 448 (1002)
...|++.++||+|||++++.++++.+.....+ ...+++..+...++++..++++++++++.+.+. .......+++..+
T Consensus 115 ~~~~~~~~~hel~~pl~~i~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 193 (336)
T COG0642 115 KREFLANISHELRTPLTAIRGLLELLLEGLLD-PQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLAEL 193 (336)
T ss_pred HHHHHHhhhhhhcCcHHHHHHHHHHhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCHHHH
Confidence 35799999999999999999999866554222 267788888889999999999999999998863 3333566778888
Q ss_pred HHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhhh
Q 039716 449 VKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSK 527 (1002)
Q Consensus 449 i~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~ 527 (1002)
+.+++........ ..+.+..... .+..+.+|+.++.|||.||++||+||++.|.|.|.+...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~l~~vl~nLi~NAi~~~~~~~i~i~~~~~--------------- 256 (336)
T COG0642 194 LEEVVRLLAPLAQEKGIELAVDLP--ELPYVLGDPERLRQVLVNLLSNAIKYTPGGEITISVRQD--------------- 256 (336)
T ss_pred HHHHHHHHHHHHHHcCCEEEEecC--CCceEeeCHHHHHHHHHHHHHHHhccCCCCeEEEEEEec---------------
Confidence 8888877766543 4454443332 344688999999999999999999999966777766321
Q ss_pred hhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCc
Q 039716 528 AYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607 (1002)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~ 607 (1002)
..++.+.|.|+|+||+++.
T Consensus 257 -------------------------------------------------------------~~~i~i~V~D~G~Gi~~~~ 275 (336)
T COG0642 257 -------------------------------------------------------------DEQVTISVEDTGPGIPEEE 275 (336)
T ss_pred -------------------------------------------------------------CCeEEEEEEcCCCCCCHHH
Confidence 0158899999999999999
Q ss_pred HhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 608 l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
++++|+||++.+.... |+||||+||+++++.|||.|.++|.+|.||+|+++||...
T Consensus 276 ~~~if~~~~~~~~~~~----g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 276 LERIFEPFFRTDKSRS----GTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred HHHhccCeeccCCCCC----CCCccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccc
Confidence 9999999998765322 9999999999999999999999999999999999999754
No 42
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.94 E-value=5.3e-25 Score=272.94 Aligned_cols=261 Identities=21% Similarity=0.322 Sum_probs=183.0
Q ss_pred EEeeeecCCCCEEEEEEEeechhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHH
Q 039716 309 YVEPVFSKSGETIGVNYMGMDVTDQV---RKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPL 385 (1002)
Q Consensus 309 ~~~p~~~~~G~~~gi~~~~~DITe~~---~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~~~~~k~fla~iSHELRTPL 385 (1002)
.+.|+.. .|+++|++++..+.+... .....+..+..+.+...+ ..++.+.+...++....+++.+.++||||||+
T Consensus 413 l~vPL~~-~~~~~G~l~l~~~~~~~~~~~e~~~lL~~l~~q~a~~l~-~~~~~~~l~~~~~~~~~~~~~a~i~HdLrn~l 490 (679)
T TIGR02916 413 LIVPLIS-GEELVGFVVLARPRTAGEFNWEVRDLLKTAGRQAASYLA-QMEASEALAEARQFEAFNRMSAFVVHDLKNLV 490 (679)
T ss_pred EEEEecc-CCEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3468765 467899988876544210 011111111111111111 11111111122222333578899999999999
Q ss_pred HHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHHHHHHHHHhhcc
Q 039716 386 TGVVSMAEILSNTKLDR-EQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKIL 464 (1002)
Q Consensus 386 ~~I~g~~elL~~~~l~~-~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~~~~~~~~~k~i 464 (1002)
+.+..+.+.+.....++ ...++++.+..+.++|.++++++.+.. ......++++.++++++....... ...+
T Consensus 491 ~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~------~~~~~~~~~l~~ll~~~~~~~~~~-~~~~ 563 (679)
T TIGR02916 491 AQLSLLLRNAERHKDNPEFQDDMLETVENAVNRMKKLLAQLRSKG------LEEEKLCVDLVDLLRRAIASKRAQ-GPRP 563 (679)
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cccCCccccHHHHHHHHHHHhhhh-cCCc
Confidence 99998888766544444 355688889999999999988875433 244556789999998887765432 1222
Q ss_pred eeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCC
Q 039716 465 MLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQP 543 (1002)
Q Consensus 465 ~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (1002)
.+. +..+ ..+.+|+.+|.||+.||+.||+||++. |.|.|++...
T Consensus 564 ~l~--~~~~--~~v~~d~~~l~~vl~nLl~NAik~~~~~~~I~I~~~~~------------------------------- 608 (679)
T TIGR02916 564 EVS--IDTD--LSVRADRERLERVLGHLVQNALEATPGEGRVAIRVERE------------------------------- 608 (679)
T ss_pred eEE--eCCC--ceEEECHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEEc-------------------------------
Confidence 222 2222 468899999999999999999999975 6777766421
Q ss_pred CCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCc-HhhhhhhccCCCccc
Q 039716 544 KSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA-LPTLFRKYMQVSADH 622 (1002)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~-l~~IF~pF~q~~~~~ 622 (1002)
...+.|+|.|+|+|||++. .+++|+||++.+
T Consensus 609 ---------------------------------------------~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~--- 640 (679)
T TIGR02916 609 ---------------------------------------------CGAARIEIEDSGCGMSPAFIRERLFKPFDTTK--- 640 (679)
T ss_pred ---------------------------------------------CCEEEEEEEEcCCCcChHHHHHhcCCCCCCCC---
Confidence 0147899999999999999 999999998753
Q ss_pred cCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEe
Q 039716 623 ARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP 664 (1002)
Q Consensus 623 ~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP 664 (1002)
.+|+||||+|||++++.|||+|+++|.+|+||+|+++||
T Consensus 641 ---~~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 641 ---GAGMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred ---CCCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 269999999999999999999999999999999999998
No 43
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.89 E-value=4.9e-20 Score=209.50 Aligned_cols=317 Identities=24% Similarity=0.303 Sum_probs=210.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCC--cccccCCCchhccCccchhhhhHHHHHH
Q 039716 209 PVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLH--EEDILGKTDVEIFSGAGVKESQDFKREV 283 (1002)
Q Consensus 209 ~~~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~--~e~iiGk~~~e~~~~~~~~~~~~~~~~v 283 (1002)
+=.|+.+.+++.++.|.. +--++...|..|.++.+|... .++. ..+.+|++..+++++.. ...++
T Consensus 206 EP~EIa~l~~er~A~l~s----i~EGviAvd~~G~It~~N~~A~~ll~~~~~~~~~ig~~i~~v~~p~~------~l~~v 275 (537)
T COG3290 206 EPEEIATLLEERQAMLQS----IKEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIGRSIVEVLPPDS------DLPEV 275 (537)
T ss_pred CHHHHHHHHHHHHHHHHH----hhceEEEECCCCeEeehhHHHHHHhcccCcCcccccccceEeecccc------CcHHH
Confidence 345667777776666555 445788899999999998753 3333 35789999999988521 13456
Q ss_pred HHhCCCcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 284 LEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHI 363 (1002)
Q Consensus 284 l~~g~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~ 363 (1002)
++.+.+...+.. ..+...+.+...|+.. .|+++|.+..++|-||-.+.-+++...++-
T Consensus 276 l~~~~~~~~~e~----~~ng~~~i~nr~pI~~-~~~~~GaI~tFRdktei~~L~eqLt~vr~y----------------- 333 (537)
T COG3290 276 LETGKPQHDEEI----RINGRLLVANRVPIRS-GGQIVGAIITFRDKTEIKKLTEQLTGVRQY----------------- 333 (537)
T ss_pred HhcCCcccchhh----hcCCeEEEEEeccEEE-CCEEeEEEEEEecHHHHHHHHHHHHHHHHH-----------------
Confidence 777776533221 1245667777888875 689999999999998765443333322210
Q ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeec
Q 039716 364 TEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKF 443 (1002)
Q Consensus 364 ~e~~~~~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~ 443 (1002)
.+-+...+||+.|=|+.|.|++++=. -++..+| |...+..-..+++.+.. ++
T Consensus 334 -------a~aLRaq~HEfmNkLhtI~GLlql~~----yd~a~~~---I~~~~~~qq~~~~~l~~--~i------------ 385 (537)
T COG3290 334 -------AEALRAQSHEFMNKLHTILGLLQLGE----YDDALDY---IQQESEEQQELIDSLSE--KI------------ 385 (537)
T ss_pred -------HHHHHHhhHHHHHHHHHHHHHHhhcc----HHHHHHH---HHHHHhhhhhhHHHHHH--hc------------
Confidence 13456689999999999999888621 1223333 33333333334443321 11
Q ss_pred CHHHHHHHHH-HHHHHHHhhcceeccccCCCCCe-eEEccHHHHHHHHHHHHhhhhhcCC---C-CeeEEEEEecCCCCc
Q 039716 444 RPREVVKHVL-QTAAASLQKILMLEGDIADDVPI-EVIGDVLRIRQILTNLISNAIKFTP---E-GKVGIKLYVVPEPPF 517 (1002)
Q Consensus 444 ~l~~li~~v~-~~~~~~~~k~i~l~~~i~~~~p~-~v~gD~~rL~QIL~NLlsNAIKfT~---~-G~I~I~v~~~~~~~~ 517 (1002)
. ..++..++ ......-..++.+..+....+|. .-.-++.-+--|+-||+.||+.++. + ..|.+.+.-
T Consensus 386 ~-~~~lAg~LlgK~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~------ 458 (537)
T COG3290 386 K-DPVLAGFLLGKISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSD------ 458 (537)
T ss_pred c-cHHHHHHHHhHHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe------
Confidence 0 11222222 22223333555555444333331 1335788889999999999999975 2 345444421
Q ss_pred ccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEE
Q 039716 518 AKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVY 597 (1002)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 597 (1002)
...++.|+|.
T Consensus 459 ----------------------------------------------------------------------~~~~lvieV~ 468 (537)
T COG3290 459 ----------------------------------------------------------------------RGDELVIEVA 468 (537)
T ss_pred ----------------------------------------------------------------------cCCEEEEEEe
Confidence 1226899999
Q ss_pred ecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 598 DTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 598 DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
|||+||||+..++||+.=|.++ ..+|.|.||++||++|+.+||.|+++|+.+.||+|+++||...
T Consensus 469 D~G~GI~~~~~~~iFe~G~Stk-----~~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~ 533 (537)
T COG3290 469 DTGPGIPPEVRDKIFEKGVSTK-----NTGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVK 533 (537)
T ss_pred CCCCCCChHHHHHHHhcCcccc-----CCCCCchhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCc
Confidence 9999999999999999876543 2468999999999999999999999999999999999999853
No 44
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.88 E-value=7.6e-21 Score=226.55 Aligned_cols=190 Identities=15% Similarity=0.252 Sum_probs=146.7
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKL-DREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~~l-~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li 449 (1002)
+++.+.++||++|||++|.+.++++.+... +++..+..+.+...+.++.+.++++++..+.. ...++++.+.+
T Consensus 303 ~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~~------~l~~~~L~~~l 376 (495)
T PRK11644 303 RDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRPR------QLDDLTLEQAI 376 (495)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCc------ccccCCHHHHH
Confidence 478889999999999999999999876433 34455778889999999999999998765422 23467888888
Q ss_pred HHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhhhh
Q 039716 450 KHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKA 528 (1002)
Q Consensus 450 ~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~~ 528 (1002)
++++..+..... ....+....+. +....+|+..+.|++.|+++||+||++.|.|.|++...
T Consensus 377 ~~l~~~l~~~~~~~~v~l~~~~~~--~~l~~~~~~~L~ril~nlL~NAiKha~~~~I~I~l~~~---------------- 438 (495)
T PRK11644 377 RSLMREMELEDRGIVSHLDWRIDE--SALSETQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQ---------------- 438 (495)
T ss_pred HHHHHHHHHhhcCceEEEEecCCc--ccCChhHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEc----------------
Confidence 888776653322 22333333222 22345678889999999999999999988877766421
Q ss_pred hhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcH
Q 039716 529 YQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608 (1002)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l 608 (1002)
...+.++|+|+|+|||++.
T Consensus 439 ------------------------------------------------------------~~~i~l~V~DnG~Gi~~~~- 457 (495)
T PRK11644 439 ------------------------------------------------------------DERLMLVIEDDGSGLPPGS- 457 (495)
T ss_pred ------------------------------------------------------------CCEEEEEEEECCCCCCcCC-
Confidence 1147899999999999752
Q ss_pred hhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeC
Q 039716 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665 (1002)
Q Consensus 609 ~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~ 665 (1002)
.|+|+||+|||++++.|||+|+++| ++||+|+++||.
T Consensus 458 ------------------~~~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 458 ------------------GQQGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred ------------------CCCCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 3689999999999999999999999 789999999995
No 45
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.87 E-value=1.4e-20 Score=205.71 Aligned_cols=211 Identities=23% Similarity=0.335 Sum_probs=166.9
Q ss_pred HHHHHHhhhccccHHHHHHHHHHH---HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEI---LSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~el---L~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~ 447 (1002)
++=+.++||||+.|||++..|.=- ..+...+...+.+++.|..=.+|+-.+|+.+-.|+|-.+++-.+ .|+++.+
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~~l--qpV~L~~ 529 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDESL--QPVRLNS 529 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccHHH
Confidence 467789999999999999887642 23344556678899999999999999999999999988877554 4788999
Q ss_pred HHHHHHHHHHHHHhh-cceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhh
Q 039716 448 VVKHVLQTAAASLQK-ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKS 526 (1002)
Q Consensus 448 li~~v~~~~~~~~~k-~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~ 526 (1002)
++..+...+....+. .+.+.... + .+.|.||..+|+|||.||+-||+.++..-...|.+....
T Consensus 530 ~v~~AweLl~~khk~rQ~~Li~pt--D-~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~------------- 593 (673)
T COG4192 530 VVEQAWELLQTKHKRRQIKLINPT--D-DLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALG------------- 593 (673)
T ss_pred HHHHHHHHHHhhhhhccccccCCc--c-cceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeec-------------
Confidence 999888877765542 33333222 3 347999999999999999999999975432233332211
Q ss_pred hhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcC
Q 039716 527 KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606 (1002)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e 606 (1002)
.....+++.|.|+|.|.|-+
T Consensus 594 ------------------------------------------------------------~~~e~l~i~i~DnGqGwp~~ 613 (673)
T COG4192 594 ------------------------------------------------------------TEQEMLRIAIIDNGQGWPHE 613 (673)
T ss_pred ------------------------------------------------------------CcccceEEEEecCCCCCchh
Confidence 01124788999999999999
Q ss_pred cHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeC
Q 039716 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665 (1002)
Q Consensus 607 ~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~ 665 (1002)
..+++|.||.+. |.-|.||||+||..|++.|.|.+.+.|...+|+++.+.|..
T Consensus 614 l~dkLl~PFtts------K~vgLGlGLSIsqSlmeqmqG~l~lAStLt~nA~ViL~f~v 666 (673)
T COG4192 614 LVDKLLTPFTTS------KEVGLGLGLSISQSLMEQMQGRLALASTLTKNAMVILEFQV 666 (673)
T ss_pred HHHHhcCCcccc------cccccccchhHHHHHHHHhcCcchHhhhcccCcEEEEEEee
Confidence 999999999754 44599999999999999999999999999999999888864
No 46
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.83 E-value=4.1e-20 Score=197.21 Aligned_cols=116 Identities=32% Similarity=0.460 Sum_probs=109.0
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++.....+...|++.||.|+.+.+|.+|++.+... ||+||+|++||+|||+++|++||+. .
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~-~--------- 69 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRAK-K--------- 69 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC-CCEEEEECCCCCCCHHHHHHHHHhh-c---------
Confidence 3799999999999999999999999999999999999999988 9999999999999999999999963 1
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
...+|||++||..+.+++..++++|||||++|||++.+|...|+..+
T Consensus 70 ---------------~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~l 116 (229)
T COG0745 70 ---------------GSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALL 116 (229)
T ss_pred ---------------CCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999988764
No 47
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.81 E-value=9.3e-20 Score=172.83 Aligned_cols=109 Identities=41% Similarity=0.675 Sum_probs=97.1
Q ss_pred ccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCC
Q 039716 480 GDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKK 558 (1002)
Q Consensus 480 gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1002)
||+.+|++||.||+.||++|++. |.|.|.+...
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~---------------------------------------------- 34 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIEED---------------------------------------------- 34 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEE----------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEe----------------------------------------------
Confidence 79999999999999999999987 7888877532
Q ss_pred CCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHH
Q 039716 559 HGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQ 638 (1002)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~ 638 (1002)
..++.|+|.|+|.|||++.++++|.||++.+. .....+|+||||++|+.
T Consensus 35 ------------------------------~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~-~~~~~~g~GlGL~~~~~ 83 (111)
T PF02518_consen 35 ------------------------------DDHLSIEISDNGVGIPPEELEKLFEPFFTSDK-SETSISGHGLGLYIVKQ 83 (111)
T ss_dssp ------------------------------TTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-SSGGSSSSSHHHHHHHH
T ss_pred ------------------------------cCeEEEEEEeccccccccccccchhhcccccc-cccccCCCChHHHHHHH
Confidence 12588999999999999999999999998775 33456789999999999
Q ss_pred HHHHhCCEEEEEeecCCceEEEEEEeC
Q 039716 639 LVELMGGRLTVTSKVHCGSTFTFILPY 665 (1002)
Q Consensus 639 Lve~~gG~I~v~S~~g~GTtF~~~LP~ 665 (1002)
+++.|||+|++.|.+++||+|+|+||+
T Consensus 84 ~~~~~~g~l~~~~~~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 84 IAERHGGELTIESSEGGGTTVTFTLPL 110 (111)
T ss_dssp HHHHTTEEEEEEEETTTEEEEEEEEEG
T ss_pred HHHHCCCEEEEEEcCCCcEEEEEEEEC
Confidence 999999999999999999999999996
No 48
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.80 E-value=1.4e-16 Score=193.98 Aligned_cols=193 Identities=19% Similarity=0.260 Sum_probs=142.2
Q ss_pred HHHHHhhhccccHHHHHHHHHHH----HhCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCH
Q 039716 372 QMLATMSHEIRSPLTGVVSMAEI----LSNT--KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRP 445 (1002)
Q Consensus 372 ~fla~iSHELRTPL~~I~g~~el----L~~~--~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l 445 (1002)
+..+.++||+++|++.+++++.+ +... ...+...+.+..+.....++...+.+++...+. ...++++
T Consensus 362 ~~~~~la~el~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~l 434 (565)
T PRK10935 362 EERATIARELHDSLAQVLSYLKIQLTLLKRSLDEDNAKAQSIIAEFDQALSDAYRQLRELLTTFRL-------TIQEANL 434 (565)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCCCCH
Confidence 45567999999999988877653 3321 223455667777777888888888888865543 3456788
Q ss_pred HHHHHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhh
Q 039716 446 REVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQK 525 (1002)
Q Consensus 446 ~~li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~ 525 (1002)
.+++..++..+.......+.+....+. .....+++.++.|++.||+.||+||++.|.|.|.+....
T Consensus 435 ~~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~l~qv~~nll~NA~k~~~~~~i~i~~~~~~------------ 500 (565)
T PRK10935 435 GSALEEMLDQLRNQTDAKITLDCRLPS--QALDAQQQVHLLQIIREATLNAIKHANASEIAVSCVTNP------------ 500 (565)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEeeCCC--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC------------
Confidence 899988888776544333333332221 112334566799999999999999999888777664210
Q ss_pred hhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCc
Q 039716 526 SKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605 (1002)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~ 605 (1002)
..++.|+|.|+|+|||+
T Consensus 501 ---------------------------------------------------------------~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 501 ---------------------------------------------------------------DGEHTVSIRDDGIGIGE 517 (565)
T ss_pred ---------------------------------------------------------------CCEEEEEEEECCcCcCC
Confidence 11478999999999997
Q ss_pred CcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 606 e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
+. ..|+||||+||+++++.|||+|+++|.+|+||+|+|.||..
T Consensus 518 ~~------------------~~~~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~ 560 (565)
T PRK10935 518 LK------------------EPEGHYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQ 560 (565)
T ss_pred CC------------------CCCCCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCC
Confidence 32 23789999999999999999999999999999999999975
No 49
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.75 E-value=6.8e-16 Score=188.15 Aligned_cols=183 Identities=17% Similarity=0.215 Sum_probs=134.6
Q ss_pred cccHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHHHHHHH
Q 039716 381 IRSPLTGVVSMAEILSN--TKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAA 458 (1002)
Q Consensus 381 LRTPL~~I~g~~elL~~--~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~~~~~~ 458 (1002)
+..+|+.+...+..+.. ...+++.++.+..|....+++...+.++|...+.. ..+.++.+.+..++..+..
T Consensus 373 i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~~-------~~~~~l~~~l~~~~~~~~~ 445 (569)
T PRK10600 373 IAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWRQLRELLTTFRLQ-------LTEPGLRPALEASCEEFSA 445 (569)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------cccCCHHHHHHHHHHHHHH
Confidence 33445555555554432 33456778899999999999999999999877643 2456788888888877665
Q ss_pred HHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhhhhhhcchhhhhh
Q 039716 459 SLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKE 538 (1002)
Q Consensus 459 ~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (1002)
.....+.+....++. + ....++..|.||+.|+++||+||++.|.|.|.+...
T Consensus 446 ~~~~~i~~~~~~~~~-~-~~~~~~~~l~~il~ell~NA~kha~a~~i~V~~~~~-------------------------- 497 (569)
T PRK10600 446 RFGFPVKLDYQLPPR-L-VPSHQAIHLLQIAREALSNALKHAQASEVVVTVAQN-------------------------- 497 (569)
T ss_pred HhCCeEEEEecCCcc-c-CCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc--------------------------
Confidence 443333333322221 1 111245569999999999999999888777766321
Q ss_pred hccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCC
Q 039716 539 EKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQV 618 (1002)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~ 618 (1002)
...+.|+|.|+|+|||++.
T Consensus 498 --------------------------------------------------~~~~~l~V~D~G~Gi~~~~----------- 516 (569)
T PRK10600 498 --------------------------------------------------QNQVKLSVQDNGCGVPENA----------- 516 (569)
T ss_pred --------------------------------------------------CCEEEEEEEECCCCCCccc-----------
Confidence 1147899999999999863
Q ss_pred CccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 619 SADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 619 ~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
..|+|+||+||+.+++.|||+|++.|.+|+||+|+|+||..
T Consensus 517 -------~~~~glGL~i~~~~~~~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 517 -------ERSNHYGLIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred -------cCCCCccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEecC
Confidence 12789999999999999999999999999999999999974
No 50
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.72 E-value=2.8e-17 Score=178.54 Aligned_cols=119 Identities=31% Similarity=0.507 Sum_probs=111.3
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
....+||+|||.+.++..+...|+..||.|..|.||.+|++....+.+|+||+|++||+|||+++|++|+...
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~~dlvllD~~mp~mdg~ev~~~lk~~~------- 84 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMS------- 84 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccCCceEEeeccCCCccHHHHHHHHHhcC-------
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999732
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~ 998 (1002)
+...++|||++||.++.+...+|+++|+++||.||+++.+|...+.
T Consensus 85 ----------------p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~ 130 (360)
T COG3437 85 ----------------PSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVS 130 (360)
T ss_pred ----------------CcccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHH
Confidence 3567899999999999999999999999999999999999988774
No 51
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.71 E-value=6.9e-17 Score=184.88 Aligned_cols=116 Identities=28% Similarity=0.434 Sum_probs=110.5
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..+..+|+..||.|..|.|+.+|++++....||+||+|+.||+|||+++++.|++.
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~----------- 73 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSR----------- 73 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhh-----------
Confidence 469999999999999999999999999999999999999999899999999999999999999999973
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||+||++.+.+...+|++.||.|||.|||+++.|...+++.+
T Consensus 74 ---------------~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral 120 (464)
T COG2204 74 ---------------DPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERAL 120 (464)
T ss_pred ---------------CCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHH
Confidence 37799999999999999999999999999999999999999998754
No 52
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.71 E-value=1.1e-16 Score=151.27 Aligned_cols=111 Identities=28% Similarity=0.484 Sum_probs=106.0
Q ss_pred EEEEecCHHHHHHHHHHHHhcCC-eEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 862 ILLVEDNKINVMVAKSMMKQLGH-SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 862 ILiVeDn~~n~~~l~~~L~~~g~-~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
||||||++..+..++..|+..|+ .|..+.++.+|+..+....||+||+|+.||+++|+++++.||..
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~------------ 68 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQI------------ 68 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHH------------
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccc------------
Confidence 79999999999999999999999 99999999999999999999999999999999999999999973
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~ 998 (1002)
.+.+|||++|++.+.....+++++|+++||.||++.++|...|+
T Consensus 69 --------------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 69 --------------NPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp --------------TTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred --------------cccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 25799999999999999999999999999999999999998874
No 53
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.71 E-value=3.7e-17 Score=186.57 Aligned_cols=115 Identities=28% Similarity=0.425 Sum_probs=107.0
Q ss_pred CeEEEEecCHHHHHHHHHHHH--hcCCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 860 PKILLVEDNKINVMVAKSMMK--QLGHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~--~~g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
.+||||||.+..++-|+.++. ++|+. |.+|.||+||++.++...|||||+|+.||+|||+++++.|++.
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~pDiviTDI~MP~mdGLdLI~~ike~-------- 73 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQ-------- 73 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcCCCEEEEecCCCCCcHHHHHHHHHHh--------
Confidence 589999999999999999986 56776 6689999999999999999999999999999999999999973
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.|.+-+|++||+.+=+.+.+|+..|+.|||.||++.++|..+|.++
T Consensus 74 ------------------~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki 119 (475)
T COG4753 74 ------------------SPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKI 119 (475)
T ss_pred ------------------CCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999875
No 54
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.70 E-value=3.8e-16 Score=151.48 Aligned_cols=118 Identities=31% Similarity=0.515 Sum_probs=106.3
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHH-HHHHHHHcC-CCcEEEEcCCCCCCCHHHHHHHHhccccCCCch
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGV-EAVHAVQCQ-NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~-eAl~~~~~~-~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~ 935 (1002)
...+||+|||++.++..+..+|...|+.+..+.+|. +|++.+... .||+|++|+.||+|||+++++.+|..
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~------- 76 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRAR------- 76 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhC-------
Confidence 456899999999999999999999999999999995 999999999 59999999999999999999999963
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHH-HHHHHHhhc
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQK-LKECLEQYF 1001 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~-L~~~l~~~l 1001 (1002)
.+.+|||++|++........++.+|+++|+.||+...+ |...+.+++
T Consensus 77 -------------------~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 77 -------------------GPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred -------------------CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHH
Confidence 24578999999999988888899999999999977766 777777654
No 55
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.68 E-value=3e-16 Score=158.77 Aligned_cols=115 Identities=28% Similarity=0.468 Sum_probs=107.0
Q ss_pred eEEEEecCHHHHHHHHHHHHhc-CCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQL-GHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~-g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
+||||||++...++-+.++++. ||. |-+|.++++|..++....|||||+|+.||+.+|++++..||+.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~---------- 71 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQ---------- 71 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhCCCEEEEeeccCCCccHHHHHHHHhc----------
Confidence 7999999999999999999976 675 6689999999999999999999999999999999999999963
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
...+-||++||-.+.+...+++..|+-|||.|||.++.|.++|.+|.
T Consensus 72 ----------------~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~ 118 (224)
T COG4565 72 ----------------HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYR 118 (224)
T ss_pred ----------------CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHH
Confidence 35577999999999999999999999999999999999999999884
No 56
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.64 E-value=1.8e-15 Score=150.25 Aligned_cols=117 Identities=22% Similarity=0.326 Sum_probs=109.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
.+-|-||||+...+..+..+|+..||.+.+..++.+-+.......|-++|+|+.||+|+|+++-+++...
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~---------- 73 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAER---------- 73 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhc----------
Confidence 4569999999999999999999999999999999999999778899999999999999999999999863
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..++|||++|++.+.....+++++|+-|||.|||+.+.|..+|++-+
T Consensus 74 ----------------~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al 120 (202)
T COG4566 74 ----------------GIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERAL 120 (202)
T ss_pred ----------------CCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999988643
No 57
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.62 E-value=6.2e-15 Score=156.04 Aligned_cols=115 Identities=23% Similarity=0.367 Sum_probs=106.3
Q ss_pred eEEEEecCHHHHHHHHHHHHhcC-Ce-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLG-HS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g-~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
+||||||++..+.-++.+|...+ ++ +..+.||.+|++.+....||+||||+.||+|||+++++.||+
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~~----------- 70 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRA----------- 70 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcCCCEEEEcCCCCCCChHHHHHHHHH-----------
Confidence 69999999999999999999876 66 556788999999999999999999999999999999999995
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..++++|+++|++.+.....+++++|+++|+.|..++++|..+|+..+
T Consensus 71 ---------------~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~ 118 (211)
T COG2197 71 ---------------RGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVA 118 (211)
T ss_pred ---------------HCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 246789999999999999999999999999999999999999998653
No 58
>PLN03029 type-a response regulator protein; Provisional
Probab=99.62 E-value=6.2e-15 Score=157.62 Aligned_cols=119 Identities=23% Similarity=0.482 Sum_probs=106.4
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcC--------------------CCcEEEEcCCCCCCC
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ--------------------NYDLILMDVCMPVMD 917 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~--------------------~~DlIlmDi~MP~md 917 (1002)
...+||||||++.++..+..+|+..||.|.++.+|.+|++.+..+ .||+||+|+.||+|+
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 457899999999999999999999999999999999999998654 367999999999999
Q ss_pred HHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHH
Q 039716 918 GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997 (1002)
Q Consensus 918 G~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l 997 (1002)
|+++++.||... ....+|||++|+........+|+.+|+++||.||++..+|...+
T Consensus 87 G~e~l~~ir~~~------------------------~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~ 142 (222)
T PLN03029 87 GYDLLKKIKESS------------------------SLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLK 142 (222)
T ss_pred HHHHHHHHHhcc------------------------ccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHH
Confidence 999999999632 23568999999999999999999999999999999999997776
Q ss_pred Hhh
Q 039716 998 EQY 1000 (1002)
Q Consensus 998 ~~~ 1000 (1002)
..+
T Consensus 143 ~~~ 145 (222)
T PLN03029 143 PHM 145 (222)
T ss_pred HHH
Confidence 543
No 59
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.60 E-value=7.3e-15 Score=167.11 Aligned_cols=119 Identities=27% Similarity=0.446 Sum_probs=111.3
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
...+||+|||+..++..++.+|...||.|..|.+|.+|+..+....||+||.|+.||+|||+++|+++|+...
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr~~~~------- 203 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLER------- 203 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCCCcEEEEecCCCccCHHHHHHHHhcccc-------
Confidence 4568999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
...+|||++|+..+.....++++.|++|||+||+...+|...+++.
T Consensus 204 -----------------t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~ 249 (435)
T COG3706 204 -----------------TRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQ 249 (435)
T ss_pred -----------------cccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHH
Confidence 3679999999999999999999999999999999999888877654
No 60
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.59 E-value=2.2e-14 Score=173.55 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=65.8
Q ss_pred EEEEEEEecCCCCCcCcHh---------------------hhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEE
Q 039716 591 WIRCDVYDTGIGIPENALP---------------------TLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTV 649 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~---------------------~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v 649 (1002)
.+.|+|.|+|.||+++.+. .||.|||.+... .+..+|+|+||+|||++++.|||+|++
T Consensus 429 ~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-~~~~sGrGvGL~iVk~~ve~lgG~I~v 507 (670)
T PRK10547 429 NICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-VTDVSGRGVGMDVVKRNIQEMGGHVEI 507 (670)
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-cccCCCCchhHHHHHHHHHHcCCEEEE
Confidence 4789999999999987553 699998765432 234579999999999999999999999
Q ss_pred EeecCCceEEEEEEeCCCC
Q 039716 650 TSKVHCGSTFTFILPYQVS 668 (1002)
Q Consensus 650 ~S~~g~GTtF~~~LP~~~~ 668 (1002)
+|.+|+||+|++.||+..+
T Consensus 508 ~S~~g~Gt~f~i~LPltla 526 (670)
T PRK10547 508 QSKQGKGTTIRILLPLTLA 526 (670)
T ss_pred EecCCCcEEEEEEEechhh
Confidence 9999999999999998753
No 61
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.58 E-value=3.4e-14 Score=152.34 Aligned_cols=116 Identities=21% Similarity=0.303 Sum_probs=106.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhc-CCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQL-GHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~-g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+||||||++..+..+..+|... |+. |..+.+|.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~pdlvllD~~mp~~~gle~~~~l~~~-------- 75 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQA-------- 75 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhc--------
Confidence 368999999999999999999864 774 7789999999999999999999999999999999999999962
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|++...+...+++++|+++|+.||++.++|...|+++
T Consensus 76 ------------------~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~ 121 (225)
T PRK10046 76 ------------------HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRF 121 (225)
T ss_pred ------------------CCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHH
Confidence 2457899999999999999999999999999999999999999764
No 62
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.56 E-value=9.7e-15 Score=153.01 Aligned_cols=114 Identities=29% Similarity=0.594 Sum_probs=103.0
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
++|+||||+......+..+|++.|+.+-.++...+|++.+....|||||+|+.||+|+|++++.++|..+
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~---------- 70 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIE---------- 70 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcCCCEEEEEeecCCccHHHHHHHHHHhh----------
Confidence 4799999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
+.+|||++|+++. .....+..-.+|||.|||+++.|..+|.+.+
T Consensus 71 ----------------~~v~iifIssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~ 114 (361)
T COG3947 71 ----------------SAVPIIFISSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRL 114 (361)
T ss_pred ----------------ccCcEEEEecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHh
Confidence 5699999999864 4445555566999999999999999998765
No 63
>PRK11173 two-component response regulator; Provisional
Probab=99.54 E-value=1.2e-13 Score=148.60 Aligned_cols=114 Identities=22% Similarity=0.363 Sum_probs=106.3
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..+...|+..|+.|..+.++.+|+..+....||+||+|+.||.++|+++++.||..
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~----------- 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQ----------- 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHhcC-----------
Confidence 589999999999999999999999999999999999999999999999999999999999999999952
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
+.+|||++|+.........++++|+++|+.||++..+|...+...
T Consensus 73 ----------------~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~ 117 (237)
T PRK11173 73 ----------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 (237)
T ss_pred ----------------CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 358999999999999999999999999999999999998777654
No 64
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.54 E-value=1.4e-13 Score=146.64 Aligned_cols=115 Identities=22% Similarity=0.371 Sum_probs=106.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..+...|...|+.+..+.++.+|+..+....||+||+|+.||+++|+++++.||..
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~----------- 70 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQW----------- 70 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcC-----------
Confidence 379999999999999999999999999999999999999988899999999999999999999999952
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
+.+|||++|+....+....++.+|+++|+.||++..+|...++..+
T Consensus 71 ----------------~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~ 116 (225)
T PRK10529 71 ----------------SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVAL 116 (225)
T ss_pred ----------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999998887643
No 65
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.53 E-value=1.5e-13 Score=146.28 Aligned_cols=115 Identities=26% Similarity=0.407 Sum_probs=107.4
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||+|||++.....+...|+..|+.|..+.++.+|+..+....||+|++|+.||.++|+++++.||..
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~l~~~~g~~l~~~lr~~------------ 69 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSN------------ 69 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhc------------
Confidence 79999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+....++++|+++|+.||++..+|...+...+
T Consensus 70 --------------~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~ 116 (223)
T PRK10816 70 --------------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM 116 (223)
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999998887643
No 66
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.52 E-value=2.2e-13 Score=145.36 Aligned_cols=114 Identities=29% Similarity=0.507 Sum_probs=106.7
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||||||++..+..+...|+..|+.|..+.++.+|++.+....||+||+|+.||.++|+++++.+|..
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~~~~~~g~~~~~~lr~~------------ 69 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSA------------ 69 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhc------------
Confidence 69999999999999999999999999999999999999988899999999999999999999999962
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+....+....++++|+++|+.||++..+|...++..
T Consensus 70 --------------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~ 115 (227)
T PRK09836 70 --------------NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTL 115 (227)
T ss_pred --------------CCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Confidence 2468999999999999999999999999999999999999888764
No 67
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.51 E-value=5.1e-14 Score=164.65 Aligned_cols=77 Identities=26% Similarity=0.447 Sum_probs=66.0
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccc--cCcCCCccccHHHHHHHHHHhCCE-EEEEeecCCce-EEEEEEeCC
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADH--ARKYGGTGLGLAICKQLVELMGGR-LTVTSKVHCGS-TFTFILPYQ 666 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~--~~~~~GtGLGLaI~k~Lve~~gG~-I~v~S~~g~GT-tF~~~LP~~ 666 (1002)
++.|.|.|||+||+++.++++|.+|++.+... ....+|+||||++|+.+++.|+|. |+|.|.++.|+ .|+|.||+.
T Consensus 74 ~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id 153 (535)
T PRK04184 74 HYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKID 153 (535)
T ss_pred EEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEec
Confidence 47799999999999999999999997654322 224578999999999999999997 99999999998 899999875
Q ss_pred C
Q 039716 667 V 667 (1002)
Q Consensus 667 ~ 667 (1002)
.
T Consensus 154 ~ 154 (535)
T PRK04184 154 T 154 (535)
T ss_pred c
Confidence 4
No 68
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.51 E-value=3.4e-13 Score=145.19 Aligned_cols=117 Identities=22% Similarity=0.344 Sum_probs=108.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..+...|...|+.+..+.++.+|++.+....||+||+|+.||.++|+++++.||..
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~---------- 74 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQ---------- 74 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 4589999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+....++.+|+++|+.||++..+|...+...+
T Consensus 75 ----------------~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~ 121 (239)
T PRK09468 75 ----------------NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVL 121 (239)
T ss_pred ----------------CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHh
Confidence 24689999999999999999999999999999999999998887653
No 69
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.50 E-value=3.6e-13 Score=142.50 Aligned_cols=114 Identities=25% Similarity=0.392 Sum_probs=106.5
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||||||++..+..+..+|...|+.+..+.++.+|+..+....||+||+|+.||+++|+++++.+|..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~------------ 69 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLDLGLPDEDGLHLLRRWRQK------------ 69 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHhc------------
Confidence 69999999999999999999999999999999999999998899999999999999999999999952
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+..+......++.+|+++|+.||++..+|...++.+
T Consensus 70 --------------~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 115 (222)
T PRK10643 70 --------------KYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRAL 115 (222)
T ss_pred --------------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Confidence 2468999999999999999999999999999999999999888764
No 70
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.50 E-value=3.4e-13 Score=143.18 Aligned_cols=114 Identities=29% Similarity=0.393 Sum_probs=106.2
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||+|||++.....+...|...|+.|..+.++.+|++.+....||+|++|+.||.++|+++++.||..
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~----------- 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSR----------- 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhC-----------
Confidence 479999999999999999999999999999999999999998999999999999999999999999952
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
+.+|||++|+.........++++|+++|+.||++..+|...+..+
T Consensus 72 ----------------~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~ 116 (221)
T PRK10766 72 ----------------STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNL 116 (221)
T ss_pred ----------------CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHH
Confidence 358999999999999999999999999999999999998887654
No 71
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.49 E-value=4.4e-13 Score=145.04 Aligned_cols=115 Identities=18% Similarity=0.330 Sum_probs=102.9
Q ss_pred CeEEEEecCHHHHHHHHHHHHhc-CCe-EEEEcCHHHHHHHHH--cCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCch
Q 039716 860 PKILLVEDNKINVMVAKSMMKQL-GHS-IDVVNNGVEAVHAVQ--CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~-g~~-v~~a~~G~eAl~~~~--~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~ 935 (1002)
.+||||||++..+..+..+|... |+. +..+.++.+|+..+. ...||+||+|+.||+|+|+++++.|+..
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~------- 74 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA------- 74 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhh-------
Confidence 47999999999999999999864 676 457899999999886 3679999999999999999999999962
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+.........++.+|+++|+.||++.++|..+|.++
T Consensus 75 -------------------~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 75 -------------------GCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred -------------------CCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 2568999999999999999999999999999999999999998753
No 72
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.49 E-value=5.7e-13 Score=140.82 Aligned_cols=114 Identities=27% Similarity=0.423 Sum_probs=106.3
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||||||++.....+..+|+..|+.+..+.++.+|+..+....||+||+|+.||+++|+++++.||..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~i~~~------------ 69 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREK------------ 69 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhc------------
Confidence 79999999999999999999999999999999999999988899999999999999999999999962
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+....+....++.+|+++|+.||++..+|...++..
T Consensus 70 --------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~ 115 (219)
T PRK10336 70 --------------GQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEAL 115 (219)
T ss_pred --------------CCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHH
Confidence 2568999999999999999999999999999999999999888764
No 73
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.48 E-value=6.9e-13 Score=140.65 Aligned_cols=117 Identities=26% Similarity=0.392 Sum_probs=107.6
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..+...|+..|+.+..+.++.+|+..+....||+||+|+.||+++|+++++.||...
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~g~~~~~~l~~~~---------- 72 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRP---------- 72 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcCCCEEEEECCCCCCcHHHHHHHHHccc----------
Confidence 4799999999999999999999999999999999999999999999999999999999999999998632
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+.+|||++|+.........++.+|+++|+.||++..+|...+..+
T Consensus 73 --------------~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~ 119 (226)
T TIGR02154 73 --------------ETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAV 119 (226)
T ss_pred --------------cCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHH
Confidence 13568999999999999999999999999999999999999888765
No 74
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.48 E-value=6.1e-13 Score=143.41 Aligned_cols=113 Identities=21% Similarity=0.243 Sum_probs=105.4
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||||||++..+..+...|+..|+.+..+.+|.+|+..+....||+|++|+.||+++|+++++.||..
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~l~~~~g~~~~~~ir~~------------ 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQPDLVLLDIMLPGKDGMTICRDLRPK------------ 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc------------
Confidence 79999999999999999999999999999999999999999999999999999999999999999951
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+|||++|+.........++++|+++|+.||++..+|...+...
T Consensus 71 ---------------~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~ 115 (240)
T PRK10701 71 ---------------WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLH 115 (240)
T ss_pred ---------------CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 246999999999999999999999999999999999998888754
No 75
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.48 E-value=6.9e-13 Score=141.70 Aligned_cols=117 Identities=22% Similarity=0.302 Sum_probs=107.6
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++.....+...|+..|+.+..+.++.+|++.+....||+||+|+.||.++|+++++.||...
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~~---------- 72 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRES---------- 72 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcc----------
Confidence 4799999999999999999999999999999999999999989999999999999999999999999631
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+.+|||++|+.........++++|+++|+.||++..+|...+..+
T Consensus 73 --------------~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~ 119 (229)
T PRK10161 73 --------------MTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAV 119 (229)
T ss_pred --------------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 12568999999999999999999999999999999999998888764
No 76
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.47 E-value=6.3e-13 Score=145.82 Aligned_cols=119 Identities=25% Similarity=0.402 Sum_probs=105.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhc-CCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQL-GHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~-g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
+.+||||||++..+..+..+|... ++. +..+.+|.+|++.+....||+||+|+.||+|||+++++.||...
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~~DlvllD~~mp~~dG~~~l~~i~~~~------- 74 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQPDVVVLDIIMPHLDGIGVLEKLNEIE------- 74 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhc-------
Confidence 358999999999999999999864 455 45789999999999999999999999999999999999999632
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
....+|||++|+.........++++|+++|+.||++..+|...|.+++
T Consensus 75 -----------------~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~ 122 (262)
T TIGR02875 75 -----------------LSARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLA 122 (262)
T ss_pred -----------------cccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 123479999999999999999999999999999999999999987653
No 77
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.47 E-value=6.7e-13 Score=143.44 Aligned_cols=113 Identities=14% Similarity=0.287 Sum_probs=103.4
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||||||++..+..+...|+..|+.|..+.++.+|++.+....||+||+|+.||.++|+++++.||..
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~l~~~i~~~------------ 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASETVDVVVVDLNLGREDGLEIVRSLATK------------ 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc------------
Confidence 79999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCC-CHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANA-LSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~-~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+|||++|+.. .......++++|+++|+.||++..+|...++..
T Consensus 71 ---------------~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~ 116 (241)
T PRK13856 71 ---------------SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVA 116 (241)
T ss_pred ---------------CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHH
Confidence 358999999854 667778999999999999999999998888654
No 78
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.46 E-value=1e-12 Score=140.14 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=105.5
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCC--CCHHHHHHHHhccccCCCchhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV--MDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~--mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
+||||||++..+..+...|+..|+.+..+.++.+++..+....||+|++|+.||+ ++|+++++.||..
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~---------- 71 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSL---------- 71 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhc----------
Confidence 6999999999999999999999999999999999999999999999999999998 5899999999962
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+....+....++.+|+++|+.||++..+|...++..
T Consensus 72 ----------------~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~ 117 (227)
T TIGR03787 72 ----------------SATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITAL 117 (227)
T ss_pred ----------------CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 2458999999999999999999999999999999999999888754
No 79
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.46 E-value=9.3e-13 Score=140.64 Aligned_cols=112 Identities=26% Similarity=0.448 Sum_probs=103.3
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||||||++..+..+..+|+..|+.+..+.++.+|+..+. ..||+||+|+.||+++|+++++.||..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-~~~d~vl~d~~~~~~~g~~~~~~l~~~------------ 69 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDTLKELRQT------------ 69 (232)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh-cCCCEEEEeCCCCCCcHHHHHHHHHhc------------
Confidence 7999999999999999999999999999999999999886 479999999999999999999999952
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+ +|||++|+.........++++|+++|+.||++..+|...+...
T Consensus 70 --------------~~-~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 114 (232)
T PRK10955 70 --------------HQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAI 114 (232)
T ss_pred --------------CC-CcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHH
Confidence 12 8999999999999999999999999999999999999888764
No 80
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.46 E-value=1.3e-12 Score=138.53 Aligned_cols=113 Identities=27% Similarity=0.488 Sum_probs=105.8
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||||||++..+..+...|...|+.+..+.++.+|+..+....||+|++|+.||+++|+++++.||..
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~------------ 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA------------ 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHcC------------
Confidence 69999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+|||++|+....+....++.+|+++|+.||++..+|...++..
T Consensus 70 ---------------~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~ 114 (223)
T PRK11517 70 ---------------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQ 114 (223)
T ss_pred ---------------CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 247999999999999999999999999999999999999888764
No 81
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.44 E-value=1.2e-12 Score=121.67 Aligned_cols=109 Identities=46% Similarity=0.770 Sum_probs=91.9
Q ss_pred ccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCC
Q 039716 480 GDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKK 558 (1002)
Q Consensus 480 gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1002)
+|+..|.+++.|++.||+++... +.|.|.+...
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~---------------------------------------------- 34 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLERD---------------------------------------------- 34 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEc----------------------------------------------
Confidence 57889999999999999999986 6666665321
Q ss_pred CCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHH
Q 039716 559 HGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQ 638 (1002)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~ 638 (1002)
..++.|.|.|+|.||+++.+.++|.+|+.... ......+.|+||++|+.
T Consensus 35 ------------------------------~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~gl~~~~~ 83 (111)
T smart00387 35 ------------------------------GDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRKIGGTGLGLSIVKK 83 (111)
T ss_pred ------------------------------CCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCCCCcccccHHHHHH
Confidence 11478899999999999999999999986543 22334679999999999
Q ss_pred HHHHhCCEEEEEeecCCceEEEEEEeC
Q 039716 639 LVELMGGRLTVTSKVHCGSTFTFILPY 665 (1002)
Q Consensus 639 Lve~~gG~I~v~S~~g~GTtF~~~LP~ 665 (1002)
+++.|+|.+++.+..+.|++|+|.+|+
T Consensus 84 ~~~~~~g~~~~~~~~~~g~~~~~~~~~ 110 (111)
T smart00387 84 LVELHGGEISVESEPGGGTTFTITLPL 110 (111)
T ss_pred HHHHcCCEEEEEecCCCcEEEEEEeeC
Confidence 999999999999998999999999996
No 82
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.44 E-value=1.8e-12 Score=137.74 Aligned_cols=115 Identities=24% Similarity=0.418 Sum_probs=106.6
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++.....+...|...|+.+..+.++.+|+..+....||+||+|+.||.++|+++++.||..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~----------- 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLLAF----------- 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhh-----------
Confidence 479999999999999999999999999999999999999988899999999999999999999999962
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+.........++.+|+++|+.||++..+|...+...
T Consensus 73 ---------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~ 118 (228)
T PRK11083 73 ---------------HPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTI 118 (228)
T ss_pred ---------------CCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHH
Confidence 2568999999999998999999999999999999999998888764
No 83
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.43 E-value=1.7e-12 Score=138.07 Aligned_cols=115 Identities=16% Similarity=0.305 Sum_probs=104.5
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCC-e-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCC---CCHHHHHHHHhccccCCCc
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGH-S-IDVVNNGVEAVHAVQCQNYDLILMDVCMPV---MDGLKATRLIRSFEDTGNW 934 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~-~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~---mdG~e~~~~IR~~~~~~~~ 934 (1002)
.+||||||++..+..++.+|+..++ . +..+.++.++++.+....||+||+|+.||+ ++|+++++.||..
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~------ 77 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRH------ 77 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHH------
Confidence 5899999999999999999987765 3 678899999999999889999999999999 5999999999862
Q ss_pred hhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 935 DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|++........++++|+++|+.||++..+|..+|+..
T Consensus 78 --------------------~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v 123 (216)
T PRK10840 78 --------------------FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAAL 123 (216)
T ss_pred --------------------CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999998764
No 84
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.43 E-value=1.1e-12 Score=124.99 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=107.2
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
..|||||+......|...|++.||.|.+|.+..||+..++...|...++|+.|-+-+|+.+++.||+.
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~------------ 78 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRER------------ 78 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhc------------
Confidence 69999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHh
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~ 999 (1002)
.+++.||++|++++.....++.+.|+++||.||-+.+.+..+|.+
T Consensus 79 --------------~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 79 --------------RADMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred --------------CCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 356889999999999999999999999999999999999888765
No 85
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.43 E-value=2.2e-12 Score=136.03 Aligned_cols=113 Identities=27% Similarity=0.467 Sum_probs=105.4
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhh
Q 039716 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAG 941 (1002)
Q Consensus 862 ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~ 941 (1002)
||||||++..+..+...|...|+.+..+.++.+|+..+....||+|++|+.||.++|+++++.||..
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~------------- 67 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDDYDLIILDVMLPGMDGWQILQTLRRS------------- 67 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcc-------------
Confidence 6899999999999999999999999999999999999999999999999999999999999999952
Q ss_pred hcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 942 IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 942 ~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+.........++.+|+++|+.||++..+|...+...
T Consensus 68 -------------~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~ 113 (218)
T TIGR01387 68 -------------GKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTL 113 (218)
T ss_pred -------------CCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHH
Confidence 2568999999999999999999999999999999999999888764
No 86
>PRK14084 two-component response regulator; Provisional
Probab=99.42 E-value=2.5e-12 Score=139.58 Aligned_cols=113 Identities=20% Similarity=0.360 Sum_probs=99.8
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcC-C-eEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLG-H-SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g-~-~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+||||||++..+..+..+|+..+ + .+..+.++.+|+..+....||+||+|+.||+|+|+++++.||..
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~~dlv~lDi~m~~~~G~~~~~~i~~~--------- 71 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDINLMDESGIELAAKIQKM--------- 71 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 379999999999999999999876 3 57789999999999998899999999999999999999999963
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+..|||++|++. +...++++.|+++||.||++..+|..+++++
T Consensus 72 -----------------~~~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~ 115 (246)
T PRK14084 72 -----------------KEPPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKV 115 (246)
T ss_pred -----------------CCCCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHH
Confidence 2346899999875 3567899999999999999999999998775
No 87
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.42 E-value=4e-12 Score=136.52 Aligned_cols=115 Identities=27% Similarity=0.414 Sum_probs=106.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++.....+...|...|+.+..+.++.+|+..+....||+||+|+.||.++|+++++.|+..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~---------- 75 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVMMPKLDGYGVCQEIRKE---------- 75 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 4589999999999999999999999999999999999999998999999999999999999999999852
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
+.+|||++|+.........++.+|+++|+.||++..+|...+...
T Consensus 76 -----------------~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~ 120 (240)
T CHL00148 76 -----------------SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSV 120 (240)
T ss_pred -----------------CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999888754
No 88
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.42 E-value=3.1e-12 Score=133.91 Aligned_cols=114 Identities=19% Similarity=0.329 Sum_probs=105.7
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
+||+|||++..+..+...|+..|+.+. .+.++.+++..+....||+|++|+.||.++|+++++.++..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~----------- 70 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKR----------- 70 (204)
T ss_pred cEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHhh-----------
Confidence 699999999999999999999999987 69999999999999999999999999999999999999962
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+..|||++|+.........++.+|+++|+.||++..+|...++..
T Consensus 71 ---------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~ 116 (204)
T PRK09958 71 ---------------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAA 116 (204)
T ss_pred ---------------CCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHH
Confidence 2457899999999999999999999999999999999999998865
No 89
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.41 E-value=2.5e-12 Score=153.28 Aligned_cols=115 Identities=24% Similarity=0.388 Sum_probs=107.8
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..+..+|...|+.|..+.++.+|+..+....||+||+|+.||++||+++++.||..
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~~DlvllD~~lp~~dgl~~l~~ir~~----------- 72 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQR----------- 72 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEECCCCCCCCHHHHHHHHHhh-----------
Confidence 489999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|++...+....++++|+++|+.||++..+|...+.+.
T Consensus 73 ---------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 118 (469)
T PRK10923 73 ---------------HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 (469)
T ss_pred ---------------CCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHH
Confidence 2568999999999999999999999999999999999999888754
No 90
>PRK15115 response regulator GlrR; Provisional
Probab=99.40 E-value=2.5e-12 Score=152.09 Aligned_cols=116 Identities=25% Similarity=0.368 Sum_probs=108.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++.++..+..+|+..|+.|..+.++.+|+..+....||+||+|+.||+|+|+++++.|+..
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~~dlvilD~~lp~~~g~~ll~~l~~~---------- 74 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREKVDLVISDLRMDEMDGMQLFAEIQKV---------- 74 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhc----------
Confidence 4689999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+........+++.+|+++|+.||++..+|...|.+.
T Consensus 75 ----------------~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~ 120 (444)
T PRK15115 75 ----------------QPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDA 120 (444)
T ss_pred ----------------CCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999988764
No 91
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.39 E-value=4.4e-12 Score=150.57 Aligned_cols=117 Identities=32% Similarity=0.451 Sum_probs=108.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..+...|...||.|..+.++.+|+..+....||+||+|+.||+++|+++++.|+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlillD~~~p~~~g~~ll~~i~~~---------- 73 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSH---------- 73 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 4589999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+....++++|+++|+.||++..+|...+.+.+
T Consensus 74 ----------------~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l 120 (457)
T PRK11361 74 ----------------ETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRAL 120 (457)
T ss_pred ----------------CCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhc
Confidence 25689999999999999999999999999999999999998887643
No 92
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.39 E-value=1.5e-12 Score=153.64 Aligned_cols=117 Identities=21% Similarity=0.355 Sum_probs=106.3
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
...+||||||++..+..+..+|.. ++.+..+.+|.+|+..+....||+||+|+.||+|+|+++++.||+..
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~~~d~vi~d~~~p~~~g~~l~~~i~~~~-------- 224 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAETNYDLVIVSANFENYDPLRLCSQLRSKE-------- 224 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccCCCCEEEecCCCCCchHhHHHHHHHhcc--------
Confidence 456899999999999999999975 57777899999999999999999999999999999999999999632
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~ 999 (1002)
..+.+|||++|++.+.+...+|+.+|++||+.||++.++|...+..
T Consensus 225 ----------------~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~ 270 (457)
T PRK09581 225 ----------------RTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRT 270 (457)
T ss_pred ----------------ccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHH
Confidence 2367999999999999999999999999999999999999888764
No 93
>PRK09483 response regulator; Provisional
Probab=99.38 E-value=6.4e-12 Score=132.84 Aligned_cols=116 Identities=23% Similarity=0.377 Sum_probs=105.8
Q ss_pred CeEEEEecCHHHHHHHHHHHHhc-CCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQL-GHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~-g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+||||||++..+..+..+|+.. |+.+. .+.++.+|+..+....||+||+|+.||+++|+++++.|+..
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~--------- 72 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRY--------- 72 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH---------
Confidence 47999999999999999999874 78765 78999999999999999999999999999999999999852
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|..........++..|+++|+.||++.++|..+++.++
T Consensus 73 -----------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~ 119 (217)
T PRK09483 73 -----------------TPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVH 119 (217)
T ss_pred -----------------CCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999998753
No 94
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.38 E-value=2.8e-12 Score=151.57 Aligned_cols=116 Identities=30% Similarity=0.528 Sum_probs=108.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..+..+|...|+.|..+.++.+|+..+....||+||+|+.||+++|+++++.||..
T Consensus 5 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~DlvilD~~m~~~~G~~~~~~ir~~---------- 74 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKAL---------- 74 (441)
T ss_pred cceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 4689999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|++...+....++++|+.+|+.||++..+|...|.+.
T Consensus 75 ----------------~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~ 120 (441)
T PRK10365 75 ----------------NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 (441)
T ss_pred ----------------CCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHH
Confidence 2568999999999999999999999999999999999998888754
No 95
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.38 E-value=7.2e-12 Score=130.23 Aligned_cols=113 Identities=16% Similarity=0.254 Sum_probs=102.1
Q ss_pred CeEEEEecCHHHHHHHHHHHHhc-CCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQL-GHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~-g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+||||||++..+..+..+|... |+. +..+.++.+|+..+....||+||+|+.||+++|+++++.++.
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~---------- 71 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPK---------- 71 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHcc----------
Confidence 47999999999999999999854 565 568899999999999899999999999999999999998862
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+|||++|+....+....|+.+|+++|+.||++.++|...|+.++
T Consensus 72 -------------------~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~ 116 (196)
T PRK10360 72 -------------------GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVA 116 (196)
T ss_pred -------------------CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999998753
No 96
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.38 E-value=3.9e-12 Score=150.51 Aligned_cols=111 Identities=23% Similarity=0.272 Sum_probs=102.9
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCC-----CCHHHHHHHHhccccCCCchh
Q 039716 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV-----MDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 862 ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~-----mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
||||||++..+..+...| .||.|..+.++.+|++.+....||+||+|+.||+ ++|+++++.|++.
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~-------- 70 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAI-------- 70 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhh--------
Confidence 689999999999999888 7999999999999999999999999999999996 9999999999862
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|++.+.+...+|+++|+++||.||++.++|...|++.
T Consensus 71 ------------------~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~ 116 (445)
T TIGR02915 71 ------------------APDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRA 116 (445)
T ss_pred ------------------CCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhh
Confidence 3568999999999999999999999999999999999999888654
No 97
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.37 E-value=6e-12 Score=135.68 Aligned_cols=112 Identities=22% Similarity=0.383 Sum_probs=97.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCC-e-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGH-S-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~-~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+||||||++..+..+..+|+..|. . +..+.++.+|+..+....||+||+|+.||+++|+++++.++..
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~dlv~lDi~~~~~~G~~~~~~l~~~--------- 72 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRLKPDVVFLDIQMPRISGLELVGMLDPE--------- 72 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHhccc---------
Confidence 4799999999999999999998883 3 4578999999999988899999999999999999999998631
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
...+||++|++. +...++++.|+.+||.||++.++|..++.++
T Consensus 73 ------------------~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~ 115 (238)
T PRK11697 73 ------------------HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARL 115 (238)
T ss_pred ------------------CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHH
Confidence 234689999875 4667899999999999999999999988765
No 98
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.37 E-value=1.1e-11 Score=129.99 Aligned_cols=115 Identities=16% Similarity=0.269 Sum_probs=104.3
Q ss_pred CeEEEEecCHHHHHHHHHHHHhc-CCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQL-GHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~-g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+||||||++..+..+...|... ++.+. .+.++.+++..+....||+|++|+.||+++|+++++.++..
T Consensus 4 ~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~--------- 74 (210)
T PRK09935 4 ASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQI--------- 74 (210)
T ss_pred ceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHh---------
Confidence 47999999999999999999877 57765 68999999999998999999999999999999999999952
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+.........++.+|+++|+.||++..+|...|+..
T Consensus 75 -----------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 120 (210)
T PRK09935 75 -----------------QSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMI 120 (210)
T ss_pred -----------------CCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 2458999999999999999999999999999999999999998764
No 99
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.36 E-value=5.7e-12 Score=149.90 Aligned_cols=113 Identities=23% Similarity=0.386 Sum_probs=106.0
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhh
Q 039716 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAG 941 (1002)
Q Consensus 862 ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~ 941 (1002)
||||||++..+..+..+|...|+.|..+.++.+|+..+....||+||+|+.||+++|+++++.|+..
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlVllD~~~p~~~g~~ll~~l~~~------------- 67 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDVRMPGEDGLDLLPQIKKR------------- 67 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHHh-------------
Confidence 6899999999999999999999999999999999999999999999999999999999999999962
Q ss_pred hcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 942 IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 942 ~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|++.......+++.+|+++|+.||++.+.|...+.+.
T Consensus 68 -------------~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 113 (463)
T TIGR01818 68 -------------HPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERA 113 (463)
T ss_pred -------------CCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHH
Confidence 2568999999999999999999999999999999999999988764
No 100
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.36 E-value=7.3e-12 Score=142.67 Aligned_cols=112 Identities=29% Similarity=0.408 Sum_probs=96.3
Q ss_pred eEEEEecCHHHHHHHHHHHH-hcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 861 KILLVEDNKINVMVAKSMMK-QLGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~-~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
+||||||++..+..+..+|. ..|+.+. .+.+|.+|++.+....||+|++|+.||+|+|+++++.|+..
T Consensus 2 ~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~pDlVllD~~mp~~~G~e~l~~l~~~---------- 71 (337)
T PRK12555 2 RIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQPPDVILMDLEMPRMDGVEATRRIMAE---------- 71 (337)
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----------
Confidence 79999999999999999994 6678875 78999999999999999999999999999999999999852
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCC--HHHHHHHHHcCCCEEEeCCC---------ChHHHHHHHHh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANAL--SESAEECFANGMDSFVSKPV---------TFQKLKECLEQ 999 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~--~~~~~~~~~aG~d~~l~KP~---------~~~~L~~~l~~ 999 (1002)
..+|||++|+... .....+|+++|+++|+.||+ ..++|...|+.
T Consensus 72 -----------------~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~ 126 (337)
T PRK12555 72 -----------------RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQ 126 (337)
T ss_pred -----------------CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHH
Confidence 2489999998754 45677899999999999999 44555555554
No 101
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.35 E-value=2.1e-11 Score=130.87 Aligned_cols=115 Identities=27% Similarity=0.399 Sum_probs=106.1
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++.....+..+|...|+.+..+.++.+|+..+....||+||+|+.||.++|+++++.||..
T Consensus 10 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~---------- 79 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRF---------- 79 (240)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 3489999999999999999999999999999999999999998999999999999999999999999851
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
+.+|||++|+.........++.+|+++|+.||++..+|...+...
T Consensus 80 -----------------~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~ 124 (240)
T PRK10710 80 -----------------SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 (240)
T ss_pred -----------------CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 358999999999888899999999999999999999998887654
No 102
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.32 E-value=3e-11 Score=127.76 Aligned_cols=114 Identities=28% Similarity=0.476 Sum_probs=105.5
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||++||++.....+...|...|+.+..+.++.+++..+....||+|++|+.||.++|+++++.|+..
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~vild~~~~~~~~~~~~~~i~~~------------ 69 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEMYALAVLDINMPGMDGLEVLQRLRKR------------ 69 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCcHHHHHHHHHhc------------
Confidence 69999999999999999999999999999999999999988899999999999999999999999862
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+........+++.+|+++|+.||++..+|...+..+
T Consensus 70 --------------~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~ 115 (221)
T PRK15479 70 --------------GQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRAL 115 (221)
T ss_pred --------------CCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHH
Confidence 2458999999999999999999999999999999999998888654
No 103
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.31 E-value=1.1e-11 Score=137.13 Aligned_cols=103 Identities=30% Similarity=0.482 Sum_probs=92.1
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcC--CeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLG--HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g--~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+||||||.+..+.+++.+|...| .-|.++.||.+|++++.+..||+|.||+.||.|||+++++.|-..
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~--------- 72 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRL--------- 72 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCEEEEecccccccHHHHHHHHhcC---------
Confidence 589999999999999999999998 457789999999999999999999999999999999999999752
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCC--HHHHHHHHHcCCCEEEeCCCC
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANAL--SESAEECFANGMDSFVSKPVT 989 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~--~~~~~~~~~aG~d~~l~KP~~ 989 (1002)
..+|||++|+-.. .+...+|++.|+-||+.||..
T Consensus 73 ------------------~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 73 ------------------RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred ------------------CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 5689999987544 455668999999999999984
No 104
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.30 E-value=2.1e-11 Score=126.18 Aligned_cols=115 Identities=21% Similarity=0.335 Sum_probs=106.1
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
+.+||||||++.....+...|...|+.+..+.++.+++..+....||+||+|+.||.++|+++++.|+..
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~d~~~~~~~~~~~~~~l~~~---------- 72 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKAR---------- 72 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCCCCEEEEeCCCCCCcHHHHHHHHHhc----------
Confidence 4689999999999999999999999999999999999999998999999999999999999999999852
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~ 999 (1002)
.+.+|||++|+.........++.+|+++|+.||++...|...+..
T Consensus 73 ----------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~ 117 (202)
T PRK09390 73 ----------------GSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIER 117 (202)
T ss_pred ----------------CCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHH
Confidence 256899999999999999999999999999999999998887764
No 105
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.30 E-value=1.3e-11 Score=147.00 Aligned_cols=74 Identities=26% Similarity=0.371 Sum_probs=54.3
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCc----cccCcCCCccccHHHHHHHHHHhCCEEEEEeecCC-ceEEEEEEeC
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSA----DHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC-GSTFTFILPY 665 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~----~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~-GTtF~~~LP~ 665 (1002)
++.|.|.|||+||++++++++|++|++++. ..++...|.||||++|...+. +||.|+|.|..+. +..+.+.|++
T Consensus 81 ~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~GLglai~~sqlt-~GgpI~I~S~~~~~~~g~~~~L~I 159 (795)
T PRK14868 81 YYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGIGISAAVLYSQLT-SGKPAKITSRTQGSEEAQYFELII 159 (795)
T ss_pred EEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCceehHHHHHHHHHc-CCCcEEEEeCCCCCCceeEEEEEE
Confidence 478999999999999999999999986542 123344577777777777763 7999999999754 3344444444
No 106
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.29 E-value=1.3e-11 Score=143.12 Aligned_cols=68 Identities=28% Similarity=0.494 Sum_probs=57.9
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccc--cCcCCCccccHHHHHHHHHHhCCE-EEEEeecCCceEE
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADH--ARKYGGTGLGLAICKQLVELMGGR-LTVTSKVHCGSTF 659 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~--~~~~~GtGLGLaI~k~Lve~~gG~-I~v~S~~g~GTtF 659 (1002)
++.|.|.|+|+||+++.++++|++|++++... ....||.|+||++|+.+++.|+|. ++|.|..+ |+.|
T Consensus 64 ~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~-g~~~ 134 (488)
T TIGR01052 64 HYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTG-GEIY 134 (488)
T ss_pred eEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccEehhHHHHHHHHcCCceEEEEEecC-CceE
Confidence 36789999999999999999999998776432 223578999999999999999998 99999987 6666
No 107
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=99.28 E-value=1.4e-11 Score=106.01 Aligned_cols=64 Identities=45% Similarity=0.731 Sum_probs=60.0
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhC-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSN-TKLDREQ-RQLLGVMISSGDLVLQLINDILDLSKVESG 434 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~-~~l~~~~-~~~l~~i~~s~~~L~~LIndlLd~skiesg 434 (1002)
++|++++||||||||++|.+++++|.. ...++++ ++++..+..+++++..+|+++|+|+|+++|
T Consensus 3 ~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr~~~G 68 (68)
T PF00512_consen 3 GEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDFSRIESG 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 479999999999999999999999998 7788887 999999999999999999999999999987
No 108
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.27 E-value=4.7e-11 Score=137.02 Aligned_cols=104 Identities=27% Similarity=0.400 Sum_probs=92.1
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhc-CCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQL-GHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~-g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+||||||++.++..+..+|... |+.+. .+.++.+|+..+....||+|++|+.||+|+|+++++.|++.
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~~DlVllD~~mp~~dgle~l~~i~~~-------- 74 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLNPDVITLDVEMPVMDGLDALEKIMRL-------- 74 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhCCCEEEEeCCCCCCChHHHHHHHHHh--------
Confidence 358999999999999999999876 78776 89999999999999999999999999999999999999962
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCC--HHHHHHHHHcCCCEEEeCCCC
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANAL--SESAEECFANGMDSFVSKPVT 989 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~--~~~~~~~~~aG~d~~l~KP~~ 989 (1002)
.+ +|||++|+... .....+++++|+++|+.||+.
T Consensus 75 ------------------~~-~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 75 ------------------RP-TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred ------------------CC-CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 13 89999998643 466778999999999999994
No 109
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.26 E-value=7e-11 Score=139.56 Aligned_cols=117 Identities=27% Similarity=0.396 Sum_probs=107.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||+|||++..+..+..+|...|+.+..+.++.+|+..+....||+|++|+.||+++|+++++.||...
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~l~~~i~~~~---------- 72 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQPDIILLDVMMPGMDGFEVCRRLKSDP---------- 72 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHcCc----------
Confidence 3799999999999999999998999999999999999999999999999999999999999999999631
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+.+|||++|+........+++.+|+++|+.||++..+|...+.+.
T Consensus 73 --------------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 119 (457)
T PRK09581 73 --------------ATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSL 119 (457)
T ss_pred --------------ccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 23468999999999999999999999999999999999998888764
No 110
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.26 E-value=2.5e-11 Score=144.72 Aligned_cols=77 Identities=26% Similarity=0.399 Sum_probs=65.4
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCcccc--CcCCCccccHHHHHHHHHHh-CCEEEEEeecCCceEEEEEEeCCC
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHA--RKYGGTGLGLAICKQLVELM-GGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~--~~~~GtGLGLaI~k~Lve~~-gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
++.|.|.|||+||+++.++++|++|+.++.-.. ...++.|+||+++..+++.+ ||.|.+.|.++.|++|++.||+..
T Consensus 72 ~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 72 HYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSV 151 (659)
T ss_pred EEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEe
Confidence 578999999999999999999999987543211 34568999999999999886 566999999999999999999865
No 111
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.25 E-value=5.3e-11 Score=126.42 Aligned_cols=112 Identities=10% Similarity=0.077 Sum_probs=93.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHH-HHHhccccCCCch
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKAT-RLIRSFEDTGNWD 935 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~-~~IR~~~~~~~~~ 935 (1002)
...++++|||+|.....++.+|+. ++. +..+.++.+|+..+. .|||||||+.||+++|++++ +.||..
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~--~~DvvllDi~~p~~~G~~~~~~~i~~~------- 78 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS--SGSIILLDMMEADKKLIHYWQDTLSRK------- 78 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC--CCCEEEEECCCCCccHHHHHHHHHHHh-------
Confidence 345799999999999999999984 554 567889999998754 49999999999999999997 567752
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHH--cCCCEEEeCCCChHHHHHHHHhh
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA--NGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~--aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.++||++|+... ....++. +|+++|+.|+.+.++|.++|+..
T Consensus 79 -------------------~p~~~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v 124 (216)
T PRK10100 79 -------------------NNNIKILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGV 124 (216)
T ss_pred -------------------CCCCcEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHH
Confidence 35689999999876 3345555 59999999999999999999754
No 112
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.24 E-value=6.3e-11 Score=108.27 Aligned_cols=71 Identities=48% Similarity=0.769 Sum_probs=59.5
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEE
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~L 663 (1002)
.+.|.|.|+|.|+++..+.++|.+|... .......+.|+||++|++++..|||.+++.+..+.|++|++.+
T Consensus 33 ~~~v~i~d~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 33 HLEIRVEDNGPGIPEEDLERIFERFSDG--SRSRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred EEEEEEEeCCCCCCHHHHHHHhhhhhcC--CCCCCCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 4789999999999999999999987211 1222345899999999999999999999999988899998864
No 113
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.24 E-value=4.2e-11 Score=120.43 Aligned_cols=113 Identities=24% Similarity=0.381 Sum_probs=98.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
..+||++||+++++..+...|...||. |.++.+|.++.+.....+||+||||+.||..|-.+.. .+.+
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~pDvVildie~p~rd~~e~~-~~~~---------- 73 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMPRRDIIEAL-LLAS---------- 73 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcCCCEEEEecCCCCccHHHHH-HHhh----------
Confidence 458999999999999999999999996 6788999999999999999999999999999933332 3332
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~ 998 (1002)
.....|||++|++.++...+.+.++|+.+||+||++...|...|.
T Consensus 74 ----------------~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 74 ----------------ENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred ----------------cCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 235678999999999999999999999999999999988877764
No 114
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.24 E-value=5.5e-11 Score=148.00 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=102.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++.++..+..+|...||.|..+.++.+|+..+....||+||+|+.||+|+|+++++.||..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~~Dlvl~d~~lp~~~g~~~l~~l~~~---------- 76 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGEIDCVVADHEPDGFDGLALLEAVRQT---------- 76 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccCCCEEEEeccCCCCcHHHHHHHHHhc----------
Confidence 3589999999999999999999999999999999999999998899999999999999999999999862
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChH--HHHHHHH
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ--KLKECLE 998 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~--~L~~~l~ 998 (1002)
.+.+|||++|+..+.+...+++.+|+++|+.||.... .+...++
T Consensus 77 ----------------~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~ 122 (665)
T PRK13558 77 ----------------TAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIE 122 (665)
T ss_pred ----------------CCCCCEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHH
Confidence 3568999999999999999999999999999997643 4444444
No 115
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.23 E-value=6.9e-11 Score=124.67 Aligned_cols=103 Identities=12% Similarity=0.163 Sum_probs=88.1
Q ss_pred HHHHHHHHHh---cCCeEEEEcCHHHHHHHHHcCCCcEEE---EcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhccc
Q 039716 872 VMVAKSMMKQ---LGHSIDVVNNGVEAVHAVQCQNYDLIL---MDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945 (1002)
Q Consensus 872 ~~~l~~~L~~---~g~~v~~a~~G~eAl~~~~~~~~DlIl---mDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~ 945 (1002)
+..+..+|.. .|+.|..+.++.++++.+....||++| +|+.||++||++++++|+..
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~----------------- 65 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIK----------------- 65 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccCCCCEEEeeccccCCCCCCHHHHHHHHHHH-----------------
Confidence 4567788865 466678899999999999988999998 78899999999999999862
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCHHHHHHHH-HcCCCEEEeCCCChHHHHHHHHhh
Q 039716 946 MPSSGSSNHFKRIPIIAMTANALSESAEECF-ANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 946 ~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~-~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|++..+.....++ ++|+++||.||++.++|..+|+..
T Consensus 66 ---------~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v 112 (207)
T PRK11475 66 ---------FPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLS 112 (207)
T ss_pred ---------CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 4678999999988776666655 799999999999999999999864
No 116
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.23 E-value=3.9e-10 Score=106.51 Aligned_cols=118 Identities=28% Similarity=0.491 Sum_probs=105.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
..+||++++++.....+...|...|+. +..+.++.+++..+....||++++|..+|.++|+++++.++...
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di~l~d~~~~~~~~~~~~~~l~~~~-------- 76 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADG-------- 76 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccCCCEEEEcCCCCCCCHHHHHHHHHhCC--------
Confidence 468999999999999999999998984 77899999999999888999999999999999999999998632
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+.+|+++++..........++..|+++|+.||++..+|...++++
T Consensus 77 ----------------~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~ 123 (129)
T PRK10610 77 ----------------AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKI 123 (129)
T ss_pred ----------------CcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHH
Confidence 22457999999988888899999999999999999999999888765
No 117
>PRK13435 response regulator; Provisional
Probab=99.22 E-value=1.6e-10 Score=114.64 Aligned_cols=112 Identities=19% Similarity=0.280 Sum_probs=98.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCC-CCCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMP-VMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP-~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+|||++|++.....+...|+..|+.+. .+.++.++++.+....||+|++|+.|| +++|+++.+.++..
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~~-------- 76 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSAD-------- 76 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHhC--------
Confidence 56899999999999999999999999876 789999999999888999999999998 59999999999741
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
+.+|||++|+... ...++.+|+++|+.||++..+|...|+++
T Consensus 77 -------------------~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~ 118 (145)
T PRK13435 77 -------------------GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYL 118 (145)
T ss_pred -------------------CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHH
Confidence 3589999997643 35678899999999999999999999765
No 118
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.21 E-value=1e-10 Score=115.25 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=52.2
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEE
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFIL 663 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~L 663 (1002)
.+.|.|.|+|.||+ ...++|+||+.... ..+|+|+||+++++ +.|.+++++.+++||+|+++.
T Consensus 74 ~~~i~I~D~G~gi~--~~~~~~~~~~~~~~----~~~~~GlGL~lv~~----~~~~l~~~~~~~~Gt~v~i~~ 136 (137)
T TIGR01925 74 EVYITVRDEGIGIE--NLEEAREPLYTSKP----ELERSGMGFTVMEN----FMDDVSVDSEKEKGTKIIMKK 136 (137)
T ss_pred EEEEEEEEcCCCcC--chhHhhCCCcccCC----CCCCCcccHHHHHH----hCCcEEEEECCCCCeEEEEEe
Confidence 47899999999998 37789999986543 23589999999887 457999999999999999864
No 119
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.19 E-value=3.2e-10 Score=118.01 Aligned_cols=116 Identities=25% Similarity=0.373 Sum_probs=103.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcC-Ce-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLG-HS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g-~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+||||||++..+..+...|...+ +. +..+.++.+++..+....||+|++|+.||.++|+++++.++..
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~~~~~~~~l~~~-------- 74 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQLEPDIVILDLGLPGMNGLDVIPQLHQR-------- 74 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH--------
Confidence 3589999999999999999998763 55 4578999999999999999999999999999999999999862
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+.........++.+|+++|+.||++..+|...+...
T Consensus 75 ------------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 120 (211)
T PRK15369 75 ------------------WPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTV 120 (211)
T ss_pred ------------------CCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHH
Confidence 2457999999999999999999999999999999999999988764
No 120
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.19 E-value=3.5e-10 Score=118.55 Aligned_cols=115 Identities=21% Similarity=0.274 Sum_probs=103.1
Q ss_pred CeEEEEecCHHHHHHHHHHHHh-cCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQ-LGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~-~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+||+|||++.....+...|.. .++.+. .+.++.+++..+....||+|++|+.||.++|+++++.++..
T Consensus 7 ~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~~~~~~~~l~~~--------- 77 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDPDVILLDLNMKGMSGLDTLNALRRD--------- 77 (215)
T ss_pred EEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCcHHHHHHHHHHh---------
Confidence 5799999999999999999975 467764 68999999999988999999999999999999999999863
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|++++|..........++.+|+++|+.||++..+|...++..
T Consensus 78 -----------------~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~ 123 (215)
T PRK10403 78 -----------------GVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAG 123 (215)
T ss_pred -----------------CCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHH
Confidence 2457899999999888999999999999999999999999888763
No 121
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.18 E-value=4.2e-10 Score=118.21 Aligned_cols=117 Identities=22% Similarity=0.340 Sum_probs=104.1
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhc-CCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQL-GHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~-g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+||||||++..+..+...|... ++. +..+.++.+++..+....||+||+|+.||.++|+++++.++..
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvl~d~~l~~~~~~~~~~~l~~~-------- 77 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREK-------- 77 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 458999999999999999999865 455 4568999999999999999999999999999999999999863
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|+|++++.........++.+|+++|+.||++..+|...+.+.+
T Consensus 78 ------------------~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~ 124 (216)
T PRK10651 78 ------------------SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAA 124 (216)
T ss_pred ------------------CCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 24579999999999999999999999999999999999999887653
No 122
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.16 E-value=3.3e-10 Score=119.81 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=95.4
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCC---eEEEEcCHHHHHHHHHcCCCcEEEEcCC--CCCCCHHHHHHHHhccccCCCch
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGH---SIDVVNNGVEAVHAVQCQNYDLILMDVC--MPVMDGLKATRLIRSFEDTGNWD 935 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~---~v~~a~~G~eAl~~~~~~~~DlIlmDi~--MP~mdG~e~~~~IR~~~~~~~~~ 935 (1002)
.||||||++..+..++.+|...++ .+..+.++.+|+..+....||+||||+. ||.++|.++++.|++.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~------- 74 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSLRPSVVFINEDCFIHDASNSQRIKQIINQ------- 74 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhccCCCEEEEeCcccCCCCChHHHHHHHHHH-------
Confidence 589999999999999999987653 3557899999999998889999999966 8989999999999862
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCE-EEeCCCChHHHHHHHHhh
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDS-FVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~-~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+........ ++..|... |+.|+.+.++|..+|+..
T Consensus 75 -------------------~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v 120 (207)
T PRK15411 75 -------------------HPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDI 120 (207)
T ss_pred -------------------CCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHH
Confidence 3568999999987776543 55556555 889999999999999864
No 123
>PRK03660 anti-sigma F factor; Provisional
Probab=99.13 E-value=4.9e-10 Score=111.64 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=55.1
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
.+.|.|.|+|.||++ ..++|+||++... ...++|+||+|+++ +.+.|++++.++.||+|+|++++..
T Consensus 74 ~l~i~I~D~G~g~~~--~~~~~~~~~~~~~----~~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~~i~~~~~~ 140 (146)
T PRK03660 74 ELEITVRDEGKGIED--IEEAMQPLYTTKP----ELERSGMGFTVMES----FMDEVEVESEPGKGTTVRMKKYLKK 140 (146)
T ss_pred EEEEEEEEccCCCCh--HHHhhCCCcccCC----CCCCccccHHHHHH----hCCeEEEEecCCCcEEEEEEEEecc
Confidence 378999999999986 6789999986432 12478999999875 5678999999999999999998754
No 124
>PRK09191 two-component response regulator; Provisional
Probab=99.12 E-value=7.7e-10 Score=121.00 Aligned_cols=113 Identities=24% Similarity=0.331 Sum_probs=98.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCC-CCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPV-MDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+|||+||++..+..+..+|+..|+.+. .+.++.++++.+....||+||+|+.||+ ++|+++++.++..
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~~~~~~~g~e~l~~l~~~-------- 208 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKT-------- 208 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHHHh--------
Confidence 45799999999999999999999999877 7899999999999899999999999995 8999999999852
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
. ++|||++|+...... .+...|+++|+.||++..+|...|++.
T Consensus 209 ------------------~-~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~ 251 (261)
T PRK09191 209 ------------------F-DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQA 251 (261)
T ss_pred ------------------C-CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHH
Confidence 2 589999999765543 344567899999999999999999875
No 125
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.09 E-value=1e-09 Score=133.75 Aligned_cols=77 Identities=30% Similarity=0.523 Sum_probs=64.4
Q ss_pred EEEEEEEecCCCCCcCc------------------------HhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCE
Q 039716 591 WIRCDVYDTGIGIPENA------------------------LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGR 646 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~------------------------l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~ 646 (1002)
.+.|+|.|.|.||+.+. ..-||.|=|.+... -..-+|-|.||=+||+-|+.+||+
T Consensus 476 ~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~-VtdvSGRGVGMDVVk~~I~~LgG~ 554 (716)
T COG0643 476 NIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQ-VTDVSGRGVGMDVVKTNIEQLGGS 554 (716)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchh-hhcccCCccCHHHHHHHHHHcCCE
Confidence 48899999999999654 34578886655432 235679999999999999999999
Q ss_pred EEEEeecCCceEEEEEEeCCCC
Q 039716 647 LTVTSKVHCGSTFTFILPYQVS 668 (1002)
Q Consensus 647 I~v~S~~g~GTtF~~~LP~~~~ 668 (1002)
|.|+|++|+||+|++.||+..+
T Consensus 555 I~V~S~~G~GT~Fti~LPLTLa 576 (716)
T COG0643 555 ISVSSEPGKGTTFTIRLPLTLA 576 (716)
T ss_pred EEEEecCCCCeEEEEecCcHHH
Confidence 9999999999999999998753
No 126
>PRK10693 response regulator of RpoS; Provisional
Probab=99.07 E-value=6.5e-10 Score=124.67 Aligned_cols=87 Identities=24% Similarity=0.433 Sum_probs=79.1
Q ss_pred EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 039716 888 VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967 (1002)
Q Consensus 888 ~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~ 967 (1002)
.+.+|.+|++.+....||+||+|+.||+|+|+++++.||+. .+.+|||++|+..
T Consensus 2 ~a~~g~~al~~l~~~~pDlVL~D~~mp~~~Gle~~~~ir~~--------------------------~~~ipiI~lt~~~ 55 (303)
T PRK10693 2 LAANGVDALELLGGFTPDLIICDLAMPRMNGIEFVEHLRNR--------------------------GDQTPVLVISATE 55 (303)
T ss_pred EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc--------------------------CCCCcEEEEECCC
Confidence 57899999999999999999999999999999999999963 2458999999999
Q ss_pred CHHHHHHHHHcCCCEEEeCCC-ChHHHHHHHHhh
Q 039716 968 LSESAEECFANGMDSFVSKPV-TFQKLKECLEQY 1000 (1002)
Q Consensus 968 ~~~~~~~~~~aG~d~~l~KP~-~~~~L~~~l~~~ 1000 (1002)
..+...+++++|++||+.||+ +.++|...+...
T Consensus 56 ~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~ 89 (303)
T PRK10693 56 NMADIAKALRLGVQDVLLKPVKDLNRLREMVFAC 89 (303)
T ss_pred CHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHH
Confidence 999999999999999999999 589888887654
No 127
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.04 E-value=3.2e-09 Score=95.93 Aligned_cols=112 Identities=31% Similarity=0.479 Sum_probs=101.9
Q ss_pred EEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhh
Q 039716 863 LLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGI 942 (1002)
Q Consensus 863 LiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~ 942 (1002)
|++++++..+..+...|...|+.+..+.++.+++..+....||++++|..++..+|++..+.++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~~-------------- 66 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKR-------------- 66 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhCCCCEEEEecCCCCCchHHHHHHHHHh--------------
Confidence 578999999999999999999999999999999999998999999999999999999999999863
Q ss_pred cccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 943 EQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 943 ~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|+++++..........++..|+++|+.||++...|...+.+.
T Consensus 67 ------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 67 ------------GPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ------------CCCCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 2457999999888788888999999999999999999999998765
No 128
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.90 E-value=2.2e-07 Score=98.95 Aligned_cols=190 Identities=22% Similarity=0.296 Sum_probs=123.9
Q ss_pred HHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHH
Q 039716 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451 (1002)
Q Consensus 372 ~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~ 451 (1002)
.++.-+.|-++|=|..|.+++.+-.....++ ..+.+.........| .++.++|--+ ....++...+++.
T Consensus 21 ~ll~Ei~HRVKNnLqiIsSll~lq~r~~~~~-~~~~~~~~~~Ri~sl-a~~He~L~~s---------~~~~~~~~~~~~~ 89 (221)
T COG3920 21 LLLREIHHRVKNNLQIISSLLRLQARKFEDE-VLEALRESQNRIQSL-ALIHELLYKS---------GDDTWDFASYLEL 89 (221)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHH-HHHHHHHhcC---------CcceEcHHHHHHH
Confidence 3666799999999999999998766544443 333333333332222 2445555332 1234566777777
Q ss_pred HHHHHHHH-HhhcceeccccCCCCCeeEEcc-HHHHHHHHHHHHhhhhhcC----CCCeeEEEEEecCCCCcccchhhhh
Q 039716 452 VLQTAAAS-LQKILMLEGDIADDVPIEVIGD-VLRIRQILTNLISNAIKFT----PEGKVGIKLYVVPEPPFAKEGLKQK 525 (1002)
Q Consensus 452 v~~~~~~~-~~k~i~l~~~i~~~~p~~v~gD-~~rL~QIL~NLlsNAIKfT----~~G~I~I~v~~~~~~~~~~~~~~~~ 525 (1002)
+...+... ..+.+.+.....+. ..+-.| ..-|--|+.-|++||+||. +.|.|.|.+.....
T Consensus 90 L~~~l~~~~~~~~~~~~~~~~~~--~~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~----------- 156 (221)
T COG3920 90 LASNLFPSYGGKDIRLILDSGPN--VFLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGD----------- 156 (221)
T ss_pred HHHHHHHhcCCCCceEEEecCCc--eEECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCC-----------
Confidence 66666554 22334444333332 223223 2357889999999999995 36788777754211
Q ss_pred hhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCc
Q 039716 526 SKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPE 605 (1002)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~ 605 (1002)
.. +..+.|+|+|.|+|.
T Consensus 157 --------------------------------------------------------------~~-~~~l~v~deg~G~~~ 173 (221)
T COG3920 157 --------------------------------------------------------------GG-RFLLTVWDEGGGPPV 173 (221)
T ss_pred --------------------------------------------------------------CC-eEEEEEEECCCCCCC
Confidence 00 356789999999996
Q ss_pred CcHhhhhhhccCCCccccCcCCCccccHHHHHHHH-HHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 606 NALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV-ELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 606 e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lv-e~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
+. ++ ...|+|+.+++.+| ++.||.+...+.. ||+|++.+|...
T Consensus 174 ~~------~~-----------~~~g~G~~Lv~~lv~~q~~g~~~~~~~~--Gt~~~i~~~~~~ 217 (221)
T COG3920 174 EA------PL-----------SRGGFGLQLVERLVPEQLGGELEDERPD--GTEFRLRFPLSE 217 (221)
T ss_pred CC------CC-----------CCCCcHHHHHHHHHHHHcCCeEEEEcCC--CEEEEEEEeccc
Confidence 53 11 25699999999999 8999999888765 999999999753
No 129
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=98.90 E-value=2.9e-06 Score=97.25 Aligned_cols=187 Identities=18% Similarity=0.318 Sum_probs=130.5
Q ss_pred HHhhhccccHHHHHHHHHHH----HhCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHH
Q 039716 375 ATMSHEIRSPLTGVVSMAEI----LSNT---KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447 (1002)
Q Consensus 375 a~iSHELRTPL~~I~g~~el----L~~~---~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~ 447 (1002)
+.||-||---|.-.++|..+ |+.. ...++.++.+..+.....---.-+.+||.--|+ ....-++..
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRl-------tL~e~~L~~ 446 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRL-------TLQEAELPP 446 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcccCchHH
Confidence 46777777777777776653 4432 233456777888887777777777777765443 223345566
Q ss_pred HHHHHHHHHHHHHhhcceeccccCCCCCeeEEc-cHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhh
Q 039716 448 VVKHVLQTAAASLQKILMLEGDIADDVPIEVIG-DVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKS 526 (1002)
Q Consensus 448 li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~g-D~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~ 526 (1002)
-++.++..+.....-.+.+.+..++.. +.. -...+-||+.-=++||+|++..-.|.|++....
T Consensus 447 AL~~~~~~f~~qtg~~~~l~~qlp~~~---lpa~qqvHlLqIvREAlsNa~KHa~As~i~V~~~~~~------------- 510 (574)
T COG3850 447 ALEQMLAEFSNQTGITVTLDYQLPPRA---LPAHQQVHLLQIVREALSNAIKHAQASEIKVTVSQND------------- 510 (574)
T ss_pred HHHHHHHHHHhccCCeEEEeccCCCCC---CCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEecC-------------
Confidence 677777776655444444444443322 111 123577999999999999998888877764210
Q ss_pred hhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcC
Q 039716 527 KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606 (1002)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e 606 (1002)
..+.+.|.|+|+|||+.
T Consensus 511 ---------------------------------------------------------------g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 511 ---------------------------------------------------------------GQVTLTVEDNGVGIDEA 527 (574)
T ss_pred ---------------------------------------------------------------CeEEEEEeeCCcCCCCc
Confidence 13788999999999975
Q ss_pred cHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeC
Q 039716 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665 (1002)
Q Consensus 607 ~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~ 665 (1002)
. ..+| --||.|.+.=++.+||.+.|++.+|+||.+.++||-
T Consensus 528 ~-----------------e~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~~ 568 (574)
T COG3850 528 A-----------------EPSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFPP 568 (574)
T ss_pred c-----------------CCCC-CcchHHHHHHHHHhcCeEEEeecCCCCeEEEEEecc
Confidence 2 1224 679999999999999999999999999999999983
No 130
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=98.88 E-value=5.8e-07 Score=97.55 Aligned_cols=218 Identities=19% Similarity=0.306 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 039716 340 MAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVL 419 (1002)
Q Consensus 340 ~~~l~~el~~~~~~~~el~k~~~~~e~~~~~k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~ 419 (1002)
+.++++.++.+-++...+.+.+--+||..| |+.+.-+-.||-.-+|+|.--+.++++...++..++.-+.|..=+.++.
T Consensus 274 lrelnqrL~~EL~~~raLaeqListEEsiR-k~vARELHDeIGQnITAIr~Qa~ivkR~~~~~q~kqaas~Ie~LslrI~ 352 (497)
T COG3851 274 LRELNQRLQKELARNRALAEQLISTEESIR-KDVARELHDEIGQNITAIRTQAGIVKRAADNAQVKQAASLIEQLSLRIY 352 (497)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHhccCCHhHHhHHHHHHHHHHHHH
Confidence 334444444444444445444444555555 4677777889999999999999999886666666666666666677777
Q ss_pred HHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHHHHHHHHHhhcceeccccCCCCCeeEEccH---HHHHHHHHHHHhhh
Q 039716 420 QLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDV---LRIRQILTNLISNA 496 (1002)
Q Consensus 420 ~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~---~rL~QIL~NLlsNA 496 (1002)
.-+..+|.--|. -...+.-+.+.+.++++.+.-. +.++....+...+.. .-|+ .-+.+++.-++.|-
T Consensus 353 ~svrqLL~rLRP------~~LDdL~l~qai~~l~~Em~~~-ergihcq~~~~~n~~---~ldet~rvTLyRl~QE~LNNI 422 (497)
T COG3851 353 DSVRQLLGRLRP------RQLDDLTLEQAIRSLLREMELE-ERGIHCQLDWRINET---ALDETQRVTLYRLCQELLNNI 422 (497)
T ss_pred HHHHHHHHhcCC------cccccccHHHHHHHHHHHhhhh-hcCeEEEeccccCcc---cCCcceeEeHHHHHHHHHHHH
Confidence 767766642221 1123455677777777776543 234433333221110 1121 23678888999999
Q ss_pred hhcCCCCeeEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCc
Q 039716 497 IKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPV 576 (1002)
Q Consensus 497 IKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (1002)
+|+.+...|+|.+...
T Consensus 423 ~KHA~AS~V~i~l~~~---------------------------------------------------------------- 438 (497)
T COG3851 423 CKHADASAVTIQLWQQ---------------------------------------------------------------- 438 (497)
T ss_pred HhccccceEEEEEeeC----------------------------------------------------------------
Confidence 9999888888877431
Q ss_pred cCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCc
Q 039716 577 SHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCG 656 (1002)
Q Consensus 577 ~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~G 656 (1002)
...+.++|+|+|+|+|+.. +-+|.||.=.+.=|...||+++++| -.|
T Consensus 439 ------------~e~l~Lei~DdG~Gl~~~~-------------------~v~G~Gl~GmrERVsaLGG~ltlss--q~G 485 (497)
T COG3851 439 ------------DERLMLEIEDDGSGLPPGS-------------------GVQGFGLTGMRERVSALGGTLTLSS--QHG 485 (497)
T ss_pred ------------CcEEEEEEecCCcCCCCCC-------------------CccCcCcchHHHHHHHhCCceEEEe--ccC
Confidence 1137789999999999642 2478999999999999999999999 468
Q ss_pred eEEEEEEeC
Q 039716 657 STFTFILPY 665 (1002)
Q Consensus 657 TtF~~~LP~ 665 (1002)
|.+.+.||-
T Consensus 486 TrviVnLPq 494 (497)
T COG3851 486 TRVIVNLPQ 494 (497)
T ss_pred cEEEEecch
Confidence 999999993
No 131
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=98.87 E-value=6.1e-09 Score=97.03 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=90.5
Q ss_pred HhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCce
Q 039716 228 LQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSK 304 (1002)
Q Consensus 228 l~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~ 304 (1002)
++++|.++++.|.+++|.++|..+ .+..+++++|++..+++++...+......++++.++.+...+..... .++..
T Consensus 1 l~~~p~~i~v~D~~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (110)
T PF08448_consen 1 LDSSPDGIFVIDPDGRIVYANQAAAELFGVSPEELIGRSLFDLLPPEDREEFQAALRRALAGGEPVFFEEILLR-DGEER 79 (110)
T ss_dssp HHHCSSEEEEEETTSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCGCHHHHHHHHHHHHHHTSEEEEEEEECT-TSCEE
T ss_pred CCCCCceeEEECCCCEEEEEHHHHHHHhCCCHHHHhhccchhccccchhhhhHHHHHHhhccCceEEEEEEEee-cCCcE
Confidence 578999999999999999999864 57789999999999999988777888888999998877655544433 45677
Q ss_pred EEEEEEeeeecCCCCEEEEEEEeechhHHHH
Q 039716 305 TFLIYVEPVFSKSGETIGVNYMGMDVTDQVR 335 (1002)
Q Consensus 305 ~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~ 335 (1002)
++.+.+.|+++.+|.+.|+++++.|||++++
T Consensus 80 ~~~~~~~Pi~~~~g~~~g~~~~~~DiT~~rr 110 (110)
T PF08448_consen 80 WFEVSISPIFDEDGEVVGVLVIIRDITERRR 110 (110)
T ss_dssp EEEEEEEEEECTTTCEEEEEEEEEEECCHHH
T ss_pred EEEEEEEEeEcCCCCEEEEEEEEEECchhhC
Confidence 8889999999999999999999999998764
No 132
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.83 E-value=7.2e-07 Score=100.47 Aligned_cols=59 Identities=34% Similarity=0.510 Sum_probs=52.5
Q ss_pred EEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCC---EEEEEeecCCceEEEEEEeCCCC
Q 039716 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGG---RLTVTSKVHCGSTFTFILPYQVS 668 (1002)
Q Consensus 592 l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG---~I~v~S~~g~GTtF~~~LP~~~~ 668 (1002)
+++.|+|||-||+|+ ...|+|+||+.+++=++.+=| -+.+.|.+..||+++|.||.+..
T Consensus 493 l~i~VeDng~li~p~------------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~~ 554 (557)
T COG3275 493 LRIEVEDNGGLIQPD------------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQRT 554 (557)
T ss_pred EEEEEecCCCCcCCC------------------CCCCCChHHHHHHHHHHHhcCccccceEEeccCCCcEEEEEecCccc
Confidence 889999999999987 124899999999999998888 79999999999999999998753
No 133
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.82 E-value=5.3e-07 Score=104.07 Aligned_cols=90 Identities=30% Similarity=0.442 Sum_probs=76.7
Q ss_pred cHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCC
Q 039716 481 DVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHG 560 (1002)
Q Consensus 481 D~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1002)
-..-+-+|+.-.++||+||+..-.+.|++....
T Consensus 276 ~e~~l~rivQEaltN~~rHa~A~~v~V~l~~~~----------------------------------------------- 308 (365)
T COG4585 276 AEDALFRIVQEALTNAIRHAQATEVRVTLERTD----------------------------------------------- 308 (365)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEEEEEEEcC-----------------------------------------------
Confidence 455788999999999999998888887775321
Q ss_pred CCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHH
Q 039716 561 EGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lv 640 (1002)
..+.++|.|+|.|++++.. |.|+||.=-|+=|
T Consensus 309 -----------------------------~~l~l~V~DnG~Gf~~~~~-------------------~~~~GL~~mreRv 340 (365)
T COG4585 309 -----------------------------DELRLEVIDNGVGFDPDKE-------------------GGGFGLLGMRERV 340 (365)
T ss_pred -----------------------------CEEEEEEEECCcCCCcccc-------------------CCCcchhhHHHHH
Confidence 1388999999999986531 2689999999999
Q ss_pred HHhCCEEEEEeecCCceEEEEEEeC
Q 039716 641 ELMGGRLTVTSKVHCGSTFTFILPY 665 (1002)
Q Consensus 641 e~~gG~I~v~S~~g~GTtF~~~LP~ 665 (1002)
+.+||++++.|.+|+||++++++|+
T Consensus 341 ~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 341 EALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred HHcCCEEEEEecCCCceEEEEecCC
Confidence 9999999999999999999999995
No 134
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.81 E-value=3.6e-08 Score=100.04 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=54.6
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
.+.|.|.|+|+||+++.+...|.||+...... ...+.|+||+++++|++. +.+.+ ..|++|++.-.+..
T Consensus 77 ~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~--~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v~~~k~~~~ 145 (161)
T PRK04069 77 RLEIVVADNGVSFDYETLKSKLGPYDISKPIE--DLREGGLGLFLIETLMDD----VTVYK--DSGVTVSMTKYINR 145 (161)
T ss_pred EEEEEEEECCcCCChHHhccccCCCCCCCccc--ccCCCceeHHHHHHHHHh----EEEEc--CCCcEEEEEEEcCc
Confidence 58899999999999999999999988654322 224679999999999986 66665 46899998876643
No 135
>PRK15029 arginine decarboxylase; Provisional
Probab=98.76 E-value=3.9e-08 Score=120.62 Aligned_cols=105 Identities=11% Similarity=0.118 Sum_probs=84.7
Q ss_pred eEEEEecCHH--------HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHc-CCCcEEEEcCCCCCCCHH----HHHHHHhc
Q 039716 861 KILLVEDNKI--------NVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL----KATRLIRS 927 (1002)
Q Consensus 861 ~ILiVeDn~~--------n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~-~~~DlIlmDi~MP~mdG~----e~~~~IR~ 927 (1002)
+||||||+.. ....++..|+..||+|..+.++.+|+..+.. ..||+||+|++||+|+|+ ++++.||.
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~~~~ell~~IR~ 81 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccchhHHHHHHHHHh
Confidence 6999999995 6899999999999999999999999999987 689999999999999998 89999995
Q ss_pred cccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC--HHHHHHHHHcCCCEEEeCCCChHH
Q 039716 928 FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANAL--SESAEECFANGMDSFVSKPVTFQK 992 (1002)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~--~~~~~~~~~aG~d~~l~KP~~~~~ 992 (1002)
. .+.+|||++|+... .......+ --++.|+-+--+..+
T Consensus 82 ~--------------------------~~~iPIIlLTar~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 121 (755)
T PRK15029 82 R--------------------------QQNVPVFLLGDREKALAAMDRDLL-ELVDEFAWILEDTAD 121 (755)
T ss_pred h--------------------------CCCCCEEEEEcCCcccccCCHHHH-HhhheEEEecCCCHH
Confidence 2 24699999999986 22222222 225667666554333
No 136
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.74 E-value=4.1e-08 Score=106.40 Aligned_cols=113 Identities=26% Similarity=0.411 Sum_probs=96.8
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcC-Ce-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLG-HS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g-~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+|++|||++..+.-+..++.... ++ +..+.++.++++.+....+|++|+|+.||.|+|+++++.||..
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fldI~~~~~~G~ela~~i~~~--------- 72 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKG--------- 72 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhccCCCeEEEeeccCccchHHHHHHhccc---------
Confidence 479999999999999999998422 33 3368999999999999999999999999999999999999963
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+..+|+++|++. +....+++..+-||+.||++.+.|...+.+.
T Consensus 73 -----------------~~~~~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 73 -----------------DPRPAIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred -----------------CCCCeEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHH
Confidence 2567899999984 5666677888999999999999999998753
No 137
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.66 E-value=2e-06 Score=102.17 Aligned_cols=65 Identities=31% Similarity=0.448 Sum_probs=55.2
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCC-ccccHHHHHHHHHHhCCE--EEEEeecCCceEEEEEEeCC
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGG-TGLGLAICKQLVELMGGR--LTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~G-tGLGLaI~k~Lve~~gG~--I~v~S~~g~GTtF~~~LP~~ 666 (1002)
++.++|.|||+||+++....+... .++ .|+||+=+++.++.+-|. +.++|.+++||+..+.+|..
T Consensus 386 ~i~i~i~Dng~g~~~~~~~~~~~~-----------~~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 386 VIQISISDNGPGIDEEKLEGLSTK-----------GENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred EEEEEEeeCCCCCChhHHHHHHhh-----------ccCcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehh
Confidence 588999999999999887765432 122 599999999999999887 58999999999999999964
No 138
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=98.57 E-value=2.8e-07 Score=84.67 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=83.2
Q ss_pred CcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCceEEEE
Q 039716 232 PVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLI 308 (1002)
Q Consensus 232 p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~~~~ 308 (1002)
|.+++..|.++++.++|..| .|++.++++|++..+++++...........+.+..+.....++.+....+...++.+
T Consensus 1 p~~i~i~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~ 80 (104)
T PF13426_consen 1 PDGIFILDPDGRILYVNPAFERLFGYSREELIGKSISDFFPEEDRPEFEEQIERALEEGGSWSGEVRLRRKDGETFWVEV 80 (104)
T ss_dssp -SEEEEEETTSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCHHHHHHHHHHHHHTSSEEEEEEEEETTSEEEEEEE
T ss_pred CEEEEEECCcCcEEehhHHHHHHHCcCHHHHcCCCcccccCcccchhhHHHHHHHHhcCCceeEEEEEEcCCCCEEEEEE
Confidence 78899999999999999865 588899999999999998766555666667777777777778877776666777889
Q ss_pred EEeeeecCCCCEEEEEEEeechhH
Q 039716 309 YVEPVFSKSGETIGVNYMGMDVTD 332 (1002)
Q Consensus 309 ~~~p~~~~~G~~~gi~~~~~DITe 332 (1002)
+..|+.+.+|++.++++++.|||+
T Consensus 81 ~~~~i~~~~g~~~~~i~~~~DiTe 104 (104)
T PF13426_consen 81 SASPIRDEDGEITGIIGIFRDITE 104 (104)
T ss_dssp EEEEEEETTSSEEEEEEEEEEEHH
T ss_pred EEEEEECCCCCEEEEEEEEEECCC
Confidence 999999999999999999999996
No 139
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.57 E-value=5.6e-07 Score=91.13 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=53.0
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
.+.+.|.|+|.||+++.+...|.++....... ...+.|+||+|+++|++ .+.+.+ +.|+++++...+..
T Consensus 77 ~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~--~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~l~k~~~~ 145 (159)
T TIGR01924 77 RLEIIVSDQGDSFDMDTFKQSLGPYDGSEPID--DLREGGLGLFLIETLMD----EVEVYE--DSGVTVAMTKYLNR 145 (159)
T ss_pred EEEEEEEEcccccCchhhccccCCCCCCCCcc--cCCCCccCHHHHHHhcc----EEEEEe--CCCEEEEEEEEEcc
Confidence 47899999999999999888888876543321 23467999999999998 677776 45788888766543
No 140
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.53 E-value=3.8e-07 Score=76.44 Aligned_cols=63 Identities=44% Similarity=0.787 Sum_probs=56.5
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVES 433 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skies 433 (1002)
++|++.++|||||||++|.++++.+.....+++...++..+..+++++..+++++++|++.+.
T Consensus 3 ~~~~~~i~Hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 65 (66)
T smart00388 3 REFLANLSHELRTPLTAIRGYLELLEDTELSEEQREYLETILRSAERLLRLINDLLDLSRIEA 65 (66)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 368999999999999999999999877666666688999999999999999999999998765
No 141
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=98.51 E-value=7.2e-07 Score=83.39 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=85.0
Q ss_pred HHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCc-ceeEEEE
Q 039716 222 NFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPA-KREITFE 297 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~-~~e~~~~ 297 (1002)
++++.+++++|.+++..|.++++.++|.++ .|+..++++|++..+++++...........+.+..+.+. ..++.+.
T Consensus 1 e~~~~i~~~~~~~i~~~d~~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (113)
T PF00989_consen 1 ERYRAILENSPDGIFVIDEDGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRRELRERLRQALSQGESGESFEVRFR 80 (113)
T ss_dssp HHHHHHHHCSSSEEEEEETTSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHHHHHHHHHHHHHHCCHECEEEEEEE
T ss_pred CHHHHHHhcCCceEEEEeCcCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhHHHHHHHHHHHHcCCCceeEEEEEE
Confidence 367889999999999999999999999865 688999999999999998765444555555666555433 3344444
Q ss_pred EeecCceEEEEEEeeeecCCCCEEEEEEEeech
Q 039716 298 TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDV 330 (1002)
Q Consensus 298 ~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DI 330 (1002)
...++..++.+...|+++.+|.+.|+++++.||
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~DI 113 (113)
T PF00989_consen 81 LRDGRPRWVEVRASPVRDEDGQIIGILVIFRDI 113 (113)
T ss_dssp ETTSCEEEEEEEEEEEEETTEEEEEEEEEEEE-
T ss_pred ecCCcEEEEEEEEEEEEeCCCCEEEEEEEEEeC
Confidence 435666778899999999999999999999997
No 142
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.50 E-value=0.00031 Score=76.00 Aligned_cols=305 Identities=17% Similarity=0.183 Sum_probs=158.3
Q ss_pred ccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHH
Q 039716 257 EDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRK 336 (1002)
Q Consensus 257 e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~ 336 (1002)
-+..|+++.++..+.+..-++...-...+.|.- ..+-++.+..+...-........|+-+..+|.-....|+....++
T Consensus 113 pelvG~nlw~L~D~rGd~~Iq~Li~kAq~GGG~--~qYlWeKPSs~e~v~KLsyaa~ldkW~WMiGTGlYldDv~~~~~~ 190 (459)
T COG4564 113 PELVGQNLWQLTDPRGDRVIQALIAKAQEGGGL--HQYLWEKPSSHETVDKLSYAAGLDKWEWMIGTGLYLDDVSAETAA 190 (459)
T ss_pred ccccccchhhccCCCcChHHHHHHHHHHhCCCe--EEEeecCCCcccchhhhccccCccccceeeecceehHhHHHHHHH
Confidence 357899988887665544444444333333321 222333322222111122233346666777776667777766554
Q ss_pred HHHHHHHH-------------------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHH
Q 039716 337 REKMAKLR-------------------------EEIAV---QKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLTGV 388 (1002)
Q Consensus 337 ~~~~~~l~-------------------------~el~~---~~~~~~el~k~~~~~e~~~~~k~fla~iSHELRTPL~~I 388 (1002)
.+...+.+ -.+.. .-.+.++|.+..-.+.+..++ ++..-+-.-|..-|-+.
T Consensus 191 ~~~~~~anId~tf~~Vv~iavv~vllV~~t~lalNl~ehRlAD~kLkeL~qrvv~tQedEr~-rlaRELHDGIsQ~LVs~ 269 (459)
T COG4564 191 AQAAVRANIDTTFLIVVLIAVVAVLLVFATCLALNLREHRLADKKLKELAQRVVDTQEDERA-RLARELHDGISQNLVSV 269 (459)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHHHHhhchhHHHH-HHHHHHhhhHHHHHHHH
Confidence 33221100 00111 112222333222112222221 12222222233445556
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEee---ecCHHHHHHHHHHHHHHHHhhcce
Q 039716 389 VSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAA---KFRPREVVKHVLQTAAASLQKILM 465 (1002)
Q Consensus 389 ~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~---~~~l~~li~~v~~~~~~~~~k~i~ 465 (1002)
.-..+++...-.++.+. ....+..+++.|..-|+++-.+|-- +.+. ..-+..-++-++..+...-.-.+.
T Consensus 270 k~~lela~~ql~~p~~~-a~~aieKaa~aL~~Ai~EVRRiSH~------LRP~~LDDLGL~aALe~L~~~f~~~tg~~it 342 (459)
T COG4564 270 KCALELAARQLNPPKGG-AHPAIEKAADALNGAIKEVRRISHD------LRPRALDDLGLTAALEALLEDFKERTGIEIT 342 (459)
T ss_pred HHHHHHHhccCCCCCCC-CchhhhhHHHHHHHHHHHHHHhccc------cChhhhhhhhHHHHHHHHHHHhhhccCeEEE
Confidence 66667765543222221 1245667778888888887666531 1111 111222222233333221111233
Q ss_pred eccccCCCCCeeEE-ccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCC
Q 039716 466 LEGDIADDVPIEVI-GDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPK 544 (1002)
Q Consensus 466 l~~~i~~~~p~~v~-gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (1002)
+.++.. |..+. .-...|.+|..--++|-=+++..-.|+|.+.-
T Consensus 343 le~~~~---p~~l~~e~~talyRv~QEaltNIErHa~Atrv~ill~~--------------------------------- 386 (459)
T COG4564 343 LEFDTQ---PGKLKPEVATALYRVVQEALTNIERHAGATRVTILLQQ--------------------------------- 386 (459)
T ss_pred EEecCC---cccCCcHHHHHHHHHHHHHHHHHHhhcCCeEEEEEecc---------------------------------
Confidence 333222 21111 12346778888888888888755566665521
Q ss_pred CCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCccccC
Q 039716 545 SQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHAR 624 (1002)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~ 624 (1002)
....+++.|.|+|.|++-+...
T Consensus 387 -------------------------------------------~~d~vql~vrDnG~GF~~~~~~--------------- 408 (459)
T COG4564 387 -------------------------------------------MGDMVQLMVRDNGVGFSVKEAL--------------- 408 (459)
T ss_pred -------------------------------------------CCcceEEEEecCCCCccchhhc---------------
Confidence 0114789999999999865432
Q ss_pred cCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 625 KYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 625 ~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
..-.||||-=.+.=+...||.+.|+|.+. ||..++.||...
T Consensus 409 -~~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~~~ 449 (459)
T COG4564 409 -QKRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPLDA 449 (459)
T ss_pred -cCccccccccHHHHHHHhCceEEEEecCC-CcEEEEEecchh
Confidence 11269999999999999999999999987 999999999753
No 143
>PRK13560 hypothetical protein; Provisional
Probab=98.32 E-value=5.5e-06 Score=105.37 Aligned_cols=134 Identities=11% Similarity=0.092 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHH
Q 039716 209 PVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLE 285 (1002)
Q Consensus 209 ~~~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~ 285 (1002)
+.+++++.|++++.+++.+++++|.+++..|.++++.++|..+ .|++.++++|++..+++++.............+.
T Consensus 191 ~rk~ae~~l~~~~~~l~~l~e~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~ 270 (807)
T PRK13560 191 ERKRAEERIDEALHFLQQLLDNIADPAFWKDEDAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQPADDYQEADAAKFD 270 (807)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCcchhHHHHHHHHHHhc
Confidence 4556677888999999999999999999999999999998764 6889999999999998876554444333444444
Q ss_pred hCCCcceeEEEEEeecCceEE--EEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHH
Q 039716 286 KGLPAKREITFETELFGSKTF--LIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAK 342 (1002)
Q Consensus 286 ~g~~~~~e~~~~~~~~~~~~~--~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~ 342 (1002)
.+.....+..+....+...++ .+...|+.+..|.+.|+++++.|||+++++++++.+
T Consensus 271 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~~~~~g~~~g~~~~~~DITerk~~e~~L~~ 329 (807)
T PRK13560 271 ADGSQIIEAEFQNKDGRTRPVDVIFNHAEFDDKENHCAGLVGAITDISGRRAAERELLE 329 (807)
T ss_pred cCCceEEEEEEEcCCCCEEEEEEEecceEEEcCCCCEEEEEEEEEechHHHHHHHHHHH
Confidence 444444455554444433322 334457789999999999999999998887665543
No 144
>PF14501 HATPase_c_5: GHKL domain
Probab=98.29 E-value=8.4e-06 Score=75.80 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=41.4
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEe
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILP 664 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP 664 (1002)
++.|.|..+-.+ +. +.++ . .+.+.+|.|+||.+++++++.++|.+.++++.+ =-++++.||
T Consensus 40 ~~~i~i~N~~~~---~~-~~~~----~----~~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~~-~f~~~i~ip 100 (100)
T PF14501_consen 40 FLVIIIENSCEK---EI-EKLE----S----SSSKKKGHGIGLKNVKKILEKYNGSLSIESEDG-IFTVKIVIP 100 (100)
T ss_pred EEEEEEEECCCC---cc-cccc----c----cccCCCCCCcCHHHHHHHHHHCCCEEEEEEECC-EEEEEEEEC
Confidence 477888888444 21 2222 1 123456899999999999999999999988754 234444444
No 145
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.25 E-value=4.2e-05 Score=84.29 Aligned_cols=74 Identities=23% Similarity=0.422 Sum_probs=62.5
Q ss_pred EEEEEEecCCCCCcCcHhhhhhhccCCCc------cccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeC
Q 039716 592 IRCDVYDTGIGIPENALPTLFRKYMQVSA------DHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665 (1002)
Q Consensus 592 l~i~V~DtGiGI~~e~l~~IF~pF~q~~~------~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~ 665 (1002)
+.|.|+|-|-||+.+..+++|.=-|.+.. .....-.|.|-||.|||-..+-.||.+.+.|-.|-||-..++|..
T Consensus 301 l~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ 380 (414)
T KOG0787|consen 301 LLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKA 380 (414)
T ss_pred eEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccceEEEecc
Confidence 66779999999999999999985554322 112234599999999999999999999999999999999999964
No 146
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.19 E-value=1.6e-05 Score=102.94 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=97.5
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+.+|||+||++.++..+..+|...|+.+..+.++.+ +....||++++|+.||.+++...+........
T Consensus 534 ~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~~~~d~il~~~~~~~~~~~~~~~~~~~~~~------ 603 (919)
T PRK11107 534 LAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPEAHYDILLLGLPVTFREPLTMLHERLAKAK------ 603 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hccCCCCEEEecccCCCCCCHHHHHHHHHhhh------
Confidence 34679999999999999999999999999999999888 56678999999999998888776655543211
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHh
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~ 999 (1002)
....++|++++.........+.+.|+++|+.||++..+|...+..
T Consensus 604 ------------------~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~ 648 (919)
T PRK11107 604 ------------------SMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLE 648 (919)
T ss_pred ------------------hcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHH
Confidence 123568888999999999999999999999999999999888864
No 147
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.12 E-value=2.6e-06 Score=97.89 Aligned_cols=89 Identities=25% Similarity=0.337 Sum_probs=79.4
Q ss_pred CeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 039716 884 HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963 (1002)
Q Consensus 884 ~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIal 963 (1002)
++|.+|..|.+|+..+..+.+|.+|+|++||+|||+++|+.+++.. .+++++
T Consensus 13 ~~v~~a~~g~~~l~~~~~~~~~~~lld~~m~~~~~~~~~~~lk~~~----------------------------~~~v~~ 64 (435)
T COG3706 13 KEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEP----------------------------ATVVMV 64 (435)
T ss_pred hhhhhccchHHHHHHHhcCCCCeEEeecccCCcCchhHHHHHhcCC----------------------------cceEEE
Confidence 4677799999999999999999999999999999999999999742 228999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 964 TANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 964 Ta~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
|+...+....+.+++|+++|++||++...+.......
T Consensus 65 t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l 101 (435)
T COG3706 65 TALDDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSL 101 (435)
T ss_pred EecCCCCcchhHHhhhhhhhccCCCChHHHHHhhhhh
Confidence 9999999999999999999999999988887666543
No 148
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=98.09 E-value=4.1e-05 Score=71.75 Aligned_cols=103 Identities=21% Similarity=0.308 Sum_probs=72.3
Q ss_pred HHHHHhccCcEEEEecccccEEEeeccCC---CCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEee
Q 039716 224 LHFVLQNAPVVMGHQDKELRYRFIYNHFP---SLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETEL 300 (1002)
Q Consensus 224 l~~il~~~p~~i~~~d~~~~~~~~~~~~~---~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~ 300 (1002)
|..+++++|.++...|.++++++.|.... .+.+ ..+|++..++.++...+......+.+.. |.....+....
T Consensus 1 L~~il~s~~~~i~~vD~~~~I~~~n~~a~~~f~~~~-~~iGr~l~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~--- 75 (106)
T PF13596_consen 1 LNNILDSMPIGIIFVDRNLRIRYFNPAAARLFNLSP-SDIGRPLFDIHPPLSYPNLKKIIEQVRS-GKEEEFEIVIP--- 75 (106)
T ss_dssp HHHHHHHSSSEEEEEETTSBEEEE-SCGC-SS---G-GGTTSBCCCSS-HHHHHHHHHHHHHHHT-TSBSEEEEEEE---
T ss_pred ChHHHhcCCCCEEEEcCCCeEEEeChhHhhhcCCCh-HHCCCCHHHcCCccchHHHHHHHHHHHc-CCCceEEEEec---
Confidence 45689999999999999999999987643 3343 4589999999877555555555555553 33332333332
Q ss_pred cCceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 301 FGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 301 ~~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
.+.+++.+.+.|+++.+|+..|++.++.|||
T Consensus 76 ~~~~~~~~~~~P~~~~~g~~~G~v~~~~DIT 106 (106)
T PF13596_consen 76 NGGRWYLVRYRPYRDEDGEYAGAVITFQDIT 106 (106)
T ss_dssp ETTEEEEEEEEEEE-TTS-EEEEEEEEEE-G
T ss_pred CCCEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 4678899999999999999999999999997
No 149
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.05 E-value=1.8e-05 Score=65.54 Aligned_cols=60 Identities=43% Similarity=0.687 Sum_probs=52.0
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKL-DREQRQLLGVMISSGDLVLQLINDILDLSK 430 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~~l-~~~~~~~l~~i~~s~~~L~~LIndlLd~sk 430 (1002)
.++++.++|||||||++|.++++.+..... .+....++..+..++.++..++++++++++
T Consensus 5 ~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 65 (65)
T cd00082 5 GEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred HHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999998876432 566678899999999999999999999875
No 150
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.03 E-value=2.3e-05 Score=88.37 Aligned_cols=66 Identities=26% Similarity=0.327 Sum_probs=47.1
Q ss_pred EEEEEEecCCCCCcCcHhhhhhhccCCCcccc------CcCCCccccHHHHHHHHHHhCCEEEEEeec--CCceEEEEE
Q 039716 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHA------RKYGGTGLGLAICKQLVELMGGRLTVTSKV--HCGSTFTFI 662 (1002)
Q Consensus 592 l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~------~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~--g~GTtF~~~ 662 (1002)
..|.|.|+|.||++++++++|++|++.+.... ..+|--|.||+-...+ +.+.|.|.. +.+..+.+.
T Consensus 52 ~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~~ 125 (312)
T TIGR00585 52 KLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRGEALASISSV-----SRLTITTKTSAADGLAWQAL 125 (312)
T ss_pred EEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEEE
Confidence 46889999999999999999999998754321 2345568888654443 378999875 445555444
No 151
>PRK09776 putative diguanylate cyclase; Provisional
Probab=97.85 E-value=7.8e-05 Score=98.46 Aligned_cols=135 Identities=10% Similarity=0.055 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHh
Q 039716 210 VEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEK 286 (1002)
Q Consensus 210 ~~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~ 286 (1002)
.+...+.+++++.+++.+++++|.+|+..|.++++.++|..+ .|++.++++|++..+++++.............+..
T Consensus 271 ~r~~~~~l~~~e~r~~~l~e~~~~~i~~~d~dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~d~~~~~~~~~~~~~~ 350 (1092)
T PRK09776 271 FRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLLSG 350 (1092)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCceEEEEcCCCcEEehhHHHHHHhCCCHHHHccCCceeccCcchhHhHHHHHHHHHcC
Confidence 334456778888999999999999999999999999998764 67888999999988887766554444444444433
Q ss_pred CC-CcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHH
Q 039716 287 GL-PAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLR 344 (1002)
Q Consensus 287 g~-~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~ 344 (1002)
+. ....+..+..+.+...++.....|+.+.+|.+.|++++..|||++++.++++++..
T Consensus 351 ~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~~~g~~~~~i~~~~DITerk~~e~~l~~~~ 409 (1092)
T PRK09776 351 EINSYSMEKRYYRRDGEVVWALLAVSLVRDTDGTPLYFIAQIEDINELKRTEQVNERLM 409 (1092)
T ss_pred CccceeeeeEEEcCCCCEEEEEEEEEEEECCCCCEeeehhhHHhhHHHHHHHHHHHHHH
Confidence 22 22334444444455556677888999999999999999999999988776665443
No 152
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.00013 Score=82.33 Aligned_cols=77 Identities=27% Similarity=0.460 Sum_probs=58.1
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccc-cC-cCCCccccHHHHHHHHHHhCCE-EEEEeecCC-ceEEEEEEeCC
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADH-AR-KYGGTGLGLAICKQLVELMGGR-LTVTSKVHC-GSTFTFILPYQ 666 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~-~~-~~~GtGLGLaI~k~Lve~~gG~-I~v~S~~g~-GTtF~~~LP~~ 666 (1002)
++.+.|.|||+|||+++++++|-.++-.+.-+ .+ ..|--|||.+-|=-..++.-|+ +.|.|..+. ++...+.|-..
T Consensus 72 ~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id 151 (538)
T COG1389 72 HYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKID 151 (538)
T ss_pred eEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEec
Confidence 67889999999999999999998876543321 11 2245699999999889988775 778777654 78777777654
Q ss_pred C
Q 039716 667 V 667 (1002)
Q Consensus 667 ~ 667 (1002)
.
T Consensus 152 ~ 152 (538)
T COG1389 152 V 152 (538)
T ss_pred C
Confidence 4
No 153
>PRK13558 bacterio-opsin activator; Provisional
Probab=97.77 E-value=0.00032 Score=87.60 Aligned_cols=121 Identities=15% Similarity=0.157 Sum_probs=90.4
Q ss_pred HHHHHHHhccCcEEEEec---ccccEEEeecc---CCCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEE
Q 039716 222 NFLHFVLQNAPVVMGHQD---KELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREIT 295 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d---~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~ 295 (1002)
.+++.+++++|.+++..| .++++.++|.. +.|+++++++|++..+++++.............+..+.+...++.
T Consensus 148 r~~~~~~~~~~~gi~~~d~~~~dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 227 (665)
T PRK13558 148 RLKERALDEAPVGITIADATLPDEPLIYINDAFERITGYSPDEVLGRNCRFLQGEDTNEERVAELREAIDEERPTSVELR 227 (665)
T ss_pred HHHHHHHhcCCccEEEEcCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcCCCccHHHHHHHHHHHhcCCCeEEEEE
Confidence 345678999999999887 47889998875 467888999999988777654433333334455666666656665
Q ss_pred EEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHH
Q 039716 296 FETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAK 342 (1002)
Q Consensus 296 ~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~ 342 (1002)
+....+...++.....|+++..|.+.|++++..|||++++.++++.+
T Consensus 228 ~~~~dG~~~~~~~~~~pi~d~~G~~~~~vgi~~DITerk~~E~~L~~ 274 (665)
T PRK13558 228 NYRKDGSTFWNQVDIAPIRDEDGTVTHYVGFQTDVTERKEAELALQR 274 (665)
T ss_pred EECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCcHHHHHHHHHHH
Confidence 55555555667788889999999999999999999999887666553
No 154
>PRK09776 putative diguanylate cyclase; Provisional
Probab=97.73 E-value=0.00027 Score=93.38 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchh---hhhHHHHH
Q 039716 209 PVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVK---ESQDFKRE 282 (1002)
Q Consensus 209 ~~~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~---~~~~~~~~ 282 (1002)
+.+++++.|++++++++.+++++|.+++..|.++++.++|..+ .|++.++++|++..+++...... .... ...
T Consensus 523 erk~~e~~L~~~~~~l~~~l~~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~~~~~~~~~~~~~-~~~ 601 (1092)
T PRK09776 523 EVRQLNEALFQEKERLHITLDSIGEAVVCTDMAMKVTFMNPVAEKMTGWTQEEALGVPLLTVLHITFGDNGPLMEN-IYS 601 (1092)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccEEEEECCCCeEEEEcHHHHHHhCCCHHHHcCCCHHHHcccccCCcchhhHH-HHH
Confidence 4566778888999999999999999999999999999998754 57888999999988776532211 1111 222
Q ss_pred HHHhCCC--cceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHH
Q 039716 283 VLEKGLP--AKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRK 336 (1002)
Q Consensus 283 vl~~g~~--~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~ 336 (1002)
....+.+ ...+..+....+...++.....|+++.+|.+.|++++..|||++++.
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~pi~~~~g~~~g~v~~~~DITe~k~~ 657 (1092)
T PRK09776 602 CLTSRSAAYLEQDVVLHCRSGGSYDVHYSITPLSTLDGENIGSVLVIQDVTESRKM 657 (1092)
T ss_pred HHhcCCCccccceEEEEeCCCcEEEEEEEeeeeecCCCCEEEEEEEEEecchHHHH
Confidence 2222222 22344444445555566778889999999999999999999987554
No 155
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=97.67 E-value=0.00029 Score=62.85 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=76.7
Q ss_pred HHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCC-CcceeEEEE
Q 039716 222 NFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGL-PAKREITFE 297 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~-~~~~e~~~~ 297 (1002)
..++.+++++|.++...|.++++.++|..+ .++...+++|+...+++++............++..+. ....+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~d~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T TIGR00229 3 ERYRAIFESSPDAIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVRERIERLLEGEREPVSEERRVR 82 (124)
T ss_pred hHHHHHHhhCCceEEEEcCCCcEEEEchHHHHHhCCChHHhcCcchhhhcChhhhHHHHHHHHHHHcCCCCCcceEeeeE
Confidence 356778999999999999999999998754 4666778889888877665444433333344444221 122222322
Q ss_pred EeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHH
Q 039716 298 TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKR 337 (1002)
Q Consensus 298 ~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~ 337 (1002)
...+...++.....|+. .+|...+++++..|||++++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dit~~~~~~ 121 (124)
T TIGR00229 83 RKDGSEIWVEVSVSPIR-TNGGELGVVGIVRDITERKQAE 121 (124)
T ss_pred cCCCCEEEEEEEEeehh-hCCCeeEEEEEeeehhHHHHHH
Confidence 23333445556677887 7888999999999999875543
No 156
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.62 E-value=0.00029 Score=68.09 Aligned_cols=59 Identities=24% Similarity=0.284 Sum_probs=42.4
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEE
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFI 662 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~ 662 (1002)
.+.|.|.|+|.|+++.....-...= .......|+||.|++++++.. .+ + .+.|+++++.
T Consensus 66 ~l~i~v~D~G~~~d~~~~~~~~~~~-------~~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v~l~ 124 (125)
T PF13581_consen 66 RLRISVRDNGPGFDPEQLPQPDPWE-------PDSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTVTLR 124 (125)
T ss_pred EEEEEEEECCCCCChhhccCccccc-------CCCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEEEEE
Confidence 3889999999999987554321100 022346799999999999975 55 4 7779999875
No 157
>PRK10060 RNase II stability modulator; Provisional
Probab=97.52 E-value=0.00091 Score=83.47 Aligned_cols=122 Identities=23% Similarity=0.270 Sum_probs=84.3
Q ss_pred HHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCcc-chhhhhHHHHHHHHhCCCcceeEE
Q 039716 220 ADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGA-GVKESQDFKREVLEKGLPAKREIT 295 (1002)
Q Consensus 220 ~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~-~~~~~~~~~~~vl~~g~~~~~e~~ 295 (1002)
...+++.++++++.+|+..|.++++.++|..+ .|++.++++|++..+++.+. ...........++..+.....+..
T Consensus 109 ~~~~~~~v~~~~~~gI~i~D~~g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 188 (663)
T PRK10060 109 GLSFAEQVVSEANSVIVILDSRGNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVERW 188 (663)
T ss_pred HHHHHHHHHhhCCceEEEEeCCCCEEEEcHHHHHHHCcCHHHHcCCCHHHHhCChhhHHHHHHHHHHHHhcCCceEEEEE
Confidence 34567789999999999999999999998765 57888999999988876432 223333444556666666555555
Q ss_pred EEEeecCceEEEEEEeeeecCCCC-EEEEEEEeechhHHHHHHHHHHH
Q 039716 296 FETELFGSKTFLIYVEPVFSKSGE-TIGVNYMGMDVTDQVRKREKMAK 342 (1002)
Q Consensus 296 ~~~~~~~~~~~~~~~~p~~~~~G~-~~gi~~~~~DITe~~~~~~~~~~ 342 (1002)
+.+.. |...+.....++.+.+|. ..+++++..|||++++.++++..
T Consensus 189 ~~~~~-G~~~~~~~~~~~~~~~g~~~~~~i~~~~DITe~k~~e~~l~~ 235 (663)
T PRK10060 189 IKTRK-GQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRI 235 (663)
T ss_pred EEeCC-CCEEEEEeeeEEEcCCCCceEEEEEEEEechHHHHHHHHHHH
Confidence 54433 444444445566665554 45677888999998776655543
No 158
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.42 E-value=0.0029 Score=75.18 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhccCcEEEEecccccEEEeeccCCCC
Q 039716 216 ILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSL 254 (1002)
Q Consensus 216 ~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~~~~ 254 (1002)
.|++++.+++.+++++|.+++..|.++++.++|..|..+
T Consensus 124 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~ 162 (494)
T TIGR02938 124 VVANQKLLIESVVDAAPVAFVLLDPTGRVILDNQEYKKL 162 (494)
T ss_pred HHHHHHHHHHHHHhcccceEEEEcCCCCEEEechhHHHh
Confidence 455566778899999999999999999999999876544
No 159
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=97.37 E-value=0.0014 Score=83.58 Aligned_cols=114 Identities=13% Similarity=0.018 Sum_probs=81.9
Q ss_pred HHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCcc-chhhhhHHHHHHHHhCCCcceeEEEEEe
Q 039716 224 LHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGA-GVKESQDFKREVLEKGLPAKREITFETE 299 (1002)
Q Consensus 224 l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~-~~~~~~~~~~~vl~~g~~~~~e~~~~~~ 299 (1002)
+..+++++|.+++..|.++++.++|..+ .|++.++++|++..+++... ............+..+.....+..+...
T Consensus 138 ~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 217 (799)
T PRK11359 138 LIIAVDHLDRPVIVLDPERRIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTR 217 (799)
T ss_pred HHHHHhcCCCcEEEEcCCCcEEEEChhhHhhhCCCHHHHCCCChHHhcCCCCCcHHHHHHHHHhhccCCCCcceeEEeCC
Confidence 4457899999999999999999998765 57788899999988776532 2222222333444444444445555444
Q ss_pred ecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHH
Q 039716 300 LFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKR 337 (1002)
Q Consensus 300 ~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~ 337 (1002)
.+...++.....|+.+.+|.+.|++++..|||++++.+
T Consensus 218 dG~~~~~~~~~~~v~d~~g~~~~~~~~~~DITerk~~e 255 (799)
T PRK11359 218 TGEKIWIKASISPVYDVLAHLQNLVMTFSDITEERQIR 255 (799)
T ss_pred CCCEEEEEeeeeeeecCCCceeEEEEEeehhhhHHHHH
Confidence 44555666778899999999999999999999976553
No 160
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.16 E-value=0.0023 Score=48.88 Aligned_cols=54 Identities=31% Similarity=0.581 Sum_probs=49.9
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCC
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMP 914 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP 914 (1002)
+|++++|++.....+...+...|+.+..+.++.+++..+....||++++|+.+|
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCC
Confidence 689999999999999999999999999999999999998888899999998765
No 161
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=97.08 E-value=0.0069 Score=71.84 Aligned_cols=117 Identities=16% Similarity=0.027 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEecc-cccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCC
Q 039716 214 SQILKRADNFLHFVLQNAPVVMGHQDK-ELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLP 289 (1002)
Q Consensus 214 ~~~l~~~~~~l~~il~~~p~~i~~~d~-~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~ 289 (1002)
...|++++..++.+++++|.+++..|. ++++.++|..+ .|+.+++++|++..+++++..........+.....|..
T Consensus 125 ~~~l~~~e~r~~~l~e~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 204 (442)
T TIGR02040 125 YWTLREMETRYRVVLEVSSDAVLLVDMSTGRIVEANSAAAALLGGVGQSLVGRAFPQEFEGRRREELMLTLRNVRATGSA 204 (442)
T ss_pred HHHHHHHHHHHHHHHhhCCceEEEEECCCCEEEEEcHHHHHHhCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCC
Confidence 345677788899999999999999997 79999998754 58889999999998888776555555555556666654
Q ss_pred cceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHH
Q 039716 290 AKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVR 335 (1002)
Q Consensus 290 ~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~ 335 (1002)
...++. ...++ ..+.+...++.. .|.. ++++...|||++.+
T Consensus 205 ~~~~~~--~~~~~-~~~~~~~~~~~~-~~~~-~~l~~~~dit~~~~ 245 (442)
T TIGR02040 205 APVRIL--LRRSQ-KRLLVVVSVFRQ-DGES-LFLCQLSPAGATQP 245 (442)
T ss_pred cceEEE--EcCCC-eEEEEEEEEEEe-CCce-EEEEEEcccchhhh
Confidence 433332 23333 334445555543 3333 45667789987643
No 162
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=96.94 E-value=0.0061 Score=57.60 Aligned_cols=106 Identities=13% Similarity=0.218 Sum_probs=76.2
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEE-EEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLI-LMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlI-lmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
||||||||...+.-+..+|+=.|+.+..+....- ........++.+ ++...++ ...+.++.+-+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~~~~~~~v~~g~~~--~~~~~l~~l~~------------ 65 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSSPWEACAVILGSCS--KLAELLKELLK------------ 65 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhcCCcEEEEEecCch--hHHHHHHHHHh------------
Confidence 6999999999999999999999999988886544 333344445544 4444444 44455555543
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+++||+++......... ..+-+-|.-|++..+|...|++.
T Consensus 66 --------------~~~~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 66 --------------WAPHIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred --------------hCCCCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 3478999999987766111 11666799999999999999864
No 163
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=96.91 E-value=0.0072 Score=60.18 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=37.6
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCc
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCG 656 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~G 656 (1002)
.+.+.|+|.|+||. ....-+.|.+.... .-..-|+||.+.++++. ++.+++..+.+
T Consensus 76 ~~~i~i~D~G~~~~--~~~~~~~~~~~~~~----~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~ 131 (146)
T COG2172 76 KLEIRIWDQGPGIE--DLEESLGPGDTTAE----GLQEGGLGLFLAKRLMD----EFSYERSEDGR 131 (146)
T ss_pred eEEEEEEeCCCCCC--CHHHhcCCCCCCCc----ccccccccHHHHhhhhe----eEEEEeccCCc
Confidence 37889999997765 45566666643221 11234899999999775 57888666654
No 164
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=96.78 E-value=0.012 Score=69.68 Aligned_cols=110 Identities=17% Similarity=0.046 Sum_probs=68.0
Q ss_pred HhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCce
Q 039716 228 LQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSK 304 (1002)
Q Consensus 228 l~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~ 304 (1002)
++++|.+++..|.+|++.++|..+ .++..++++|++..+++++................+.. ..+.......+...
T Consensus 2 ~~~~~d~~~~~d~~g~i~~~n~~~~~~~g~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~g~ 80 (442)
T TIGR02040 2 LATAADVTLLLDAEGVVREVAANPHHPSFEQLSEWEGRRWEEIVTAESVEKFELRLSEALRTGRG-AVRVELNHIDPSSF 80 (442)
T ss_pred CcccCcEEEEECCCCcEEEEEECCCcccccccccCCCCcHhHhhCcchHHHHHHHHHHHhccCCC-cceEeeccCCCCCC
Confidence 578899999999999999998764 57788999999999988876544444433344444432 12222222222222
Q ss_pred EEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHH
Q 039716 305 TFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKM 340 (1002)
Q Consensus 305 ~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~ 340 (1002)
++.+...++...++ .|+++++.|||+....++++
T Consensus 81 ~~~~~~~~~~~~~~--~~~~~i~rDi~~~~~~~~~l 114 (442)
T TIGR02040 81 ELPMRFILVRLGAD--RGVLALGRDLRAVAELQQQL 114 (442)
T ss_pred ccCeEEEEEEeCCC--CeEEEEecccHHHHHHHHHH
Confidence 33333333332222 26778899999877655544
No 165
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.64 E-value=0.0061 Score=75.06 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=33.6
Q ss_pred EEEEEEecCCCCCcCcHhhhhhhccCCCcccc------CcCCCccccHHHHHHH
Q 039716 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHA------RKYGGTGLGLAICKQL 639 (1002)
Q Consensus 592 l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~------~~~~GtGLGLaI~k~L 639 (1002)
..|+|.|+|.||+++.+..+|.++.+.+-... ..+|=-|.||+-.-.+
T Consensus 52 ~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~GfrGeAL~sI~~v 105 (617)
T PRK00095 52 KLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGFRGEALPSIASV 105 (617)
T ss_pred EEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCcchhHHHhhhhc
Confidence 56889999999999999999999876543221 1233356677654444
No 166
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=96.64 E-value=0.017 Score=48.36 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=67.2
Q ss_pred cCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCceEEE
Q 039716 231 APVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFL 307 (1002)
Q Consensus 231 ~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~~~ 307 (1002)
+|.+++..|.++.+.++|..+ .++...+++|+...+++.+................+.....++.+....+...++.
T Consensus 1 ~~~~i~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (103)
T cd00130 1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTLEVRLRRKDGSVIWVL 80 (103)
T ss_pred CCceEEEECCCCcEEEECHHHHHHhCCCHHHHcCccHHHhcCCccchHHHHHHHHHHhcCcCeEEEEEEEccCCCEEEEE
Confidence 366788889999999988754 56677888999888877765544443434444443333334444443334445566
Q ss_pred EEEeeeecCCCCEEEEEEEeech
Q 039716 308 IYVEPVFSKSGETIGVNYMGMDV 330 (1002)
Q Consensus 308 ~~~~p~~~~~G~~~gi~~~~~DI 330 (1002)
....|+.+..|...+++++..||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~di 103 (103)
T cd00130 81 VSLTPIRDEGGEVIGLLGVVRDI 103 (103)
T ss_pred EEEEEEecCCCCEEEEEEEEecC
Confidence 77788888888999988888775
No 167
>PF12860 PAS_7: PAS fold
Probab=96.05 E-value=0.015 Score=55.04 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=65.5
Q ss_pred HhccCcEEEEecccccEEEeeccC---CCCCcccc-cCCCchhccCcc------chhhhhHHHHHHHHhCCCcceeEEEE
Q 039716 228 LQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDI-LGKTDVEIFSGA------GVKESQDFKREVLEKGLPAKREITFE 297 (1002)
Q Consensus 228 l~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~i-iGk~~~e~~~~~------~~~~~~~~~~~vl~~g~~~~~e~~~~ 297 (1002)
|+++|.+|...|.+++..++|..| .++.++.+ .|.+..+++... ..........+.+..... .....++
T Consensus 1 Ld~l~~Gv~v~D~~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (115)
T PF12860_consen 1 LDSLPQGVAVFDSDGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRRLAERGEFPPGDPEAWVRQRLARLRR-RQPRSFE 79 (115)
T ss_pred CCCcCceEEEEcCCCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhc-CCCceeE
Confidence 578999999999999999999875 45566665 788877665311 111222333333322211 1112233
Q ss_pred EeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHH
Q 039716 298 TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKR 337 (1002)
Q Consensus 298 ~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~ 337 (1002)
....+.+++.+...|.- +| |++.++.|||+.++++
T Consensus 80 ~~~~dgr~l~~~~~~~~--~G---g~v~~~~DVT~~~~~E 114 (115)
T PF12860_consen 80 LRLPDGRWLEVRAQPLP--DG---GFVLTFTDVTERRRAE 114 (115)
T ss_pred EECCCCEEEEEEeEECC--CC---CEEEEEEeCCHHHHhc
Confidence 34456677888888874 34 6778899999987654
No 168
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=96.04 E-value=0.011 Score=74.63 Aligned_cols=227 Identities=19% Similarity=0.218 Sum_probs=158.7
Q ss_pred HHHHHhhhccccHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHH
Q 039716 372 QMLATMSHEIRSPLTGVVSMAEIL-SNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVK 450 (1002)
Q Consensus 372 ~fla~iSHELRTPL~~I~g~~elL-~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~ 450 (1002)
.+...++|..|+|.+++++...++ ....+..++.-.+.....+...+..+++.-.+.++...|........+.+..++.
T Consensus 388 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~~ 467 (786)
T KOG0519|consen 388 DFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELMS 467 (786)
T ss_pred hHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhccccccccccCCCcccchhhccHHHHHH
Confidence 566777799999999999988844 4444445555566777788888999999999999877777777778889999988
Q ss_pred HHHHHHHHHH-hhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhh--cCCCCe-eEEEEEecCCCCcccchhhhhh
Q 039716 451 HVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIK--FTPEGK-VGIKLYVVPEPPFAKEGLKQKS 526 (1002)
Q Consensus 451 ~v~~~~~~~~-~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIK--fT~~G~-I~I~v~~~~~~~~~~~~~~~~~ 526 (1002)
..+....... .+...+...+....+..+.+|..++.|++.+..+++.+ ++..|. ..+.+....-...
T Consensus 468 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 538 (786)
T KOG0519|consen 468 GEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAELLGIS--------- 538 (786)
T ss_pred HHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEecccCcc---------
Confidence 8776655433 45666777777777878999999999999999999999 887763 1222211100000
Q ss_pred hhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcC
Q 039716 527 KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606 (1002)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e 606 (1002)
.+.. . .....++. .+ .......+.+.+.+++.|+...
T Consensus 539 ------vd~~-----~------~~~~~~~~---------------------~~-----~~~~~~~~~~~~~~~~~~~~~~ 575 (786)
T KOG0519|consen 539 ------VDVS-----L------SLSLAFWF---------------------LD-----LSLSDLEVCKQIEDNEEGSNNG 575 (786)
T ss_pred ------cccc-----c------cchhhhhh---------------------cc-----cccccchheEEeeeccccccCC
Confidence 0000 0 00000000 00 0001124778899999999999
Q ss_pred cHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEE
Q 039716 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650 (1002)
Q Consensus 607 ~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~ 650 (1002)
.....|..|.+......+...+.+++|+.|....+.++|.+++.
T Consensus 576 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (786)
T KOG0519|consen 576 DISSSNPLHKSLRDLTSKLSSGSGLSLALCPENSQLMEGNIGLV 619 (786)
T ss_pred CcchhhhhhhccccchhhcccccccccccchhhHHhhhcccccc
Confidence 99999888887765555445688999999999999999998865
No 169
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=95.84 E-value=0.0051 Score=60.66 Aligned_cols=67 Identities=28% Similarity=0.392 Sum_probs=41.8
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCcc--ccCcCCCcccc--HHHHHHHHHHhCCEEEEEeecC-CceEEEEEEe
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSAD--HARKYGGTGLG--LAICKQLVELMGGRLTVTSKVH-CGSTFTFILP 664 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~~--~~~~~~GtGLG--LaI~k~Lve~~gG~I~v~S~~g-~GTtF~~~LP 664 (1002)
.|.|.|+|.||+.+.+..+|......+.. .....|--|+| +|+. .++..+.|.|... ..++++|..+
T Consensus 35 ~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~A~~-----~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 35 YIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKLAIF-----SLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp EEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGGGGG-----GTEEEEEEEEESTTSSSEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHHHHH-----HhcCEEEEEEEECCCCcEEEEEEe
Confidence 47799999999999999987655543321 12234556777 4443 3678899999854 3456666555
No 170
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.59 E-value=0.33 Score=46.82 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=79.7
Q ss_pred EEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCCCH--HHHHHHHhccccCC
Q 039716 862 ILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVMDG--LKATRLIRSFEDTG 932 (1002)
Q Consensus 862 ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~mdG--~e~~~~IR~~~~~~ 932 (1002)
|++. |.+.+=..++..+|+..||+|... ...++.++.+....+|+|.+-..|+..-. -++++.+|+.
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~---- 77 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLREL---- 77 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhc----
Confidence 5555 666777788899999999998865 45788889999999999999887753222 2334444431
Q ss_pred CchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Q 039716 933 NWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998 (1002)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~ 998 (1002)
....+ .|++-+....++..++.++|+|.|+..=-+.++....|+
T Consensus 78 ---------------------~~~~i-~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 78 ---------------------GAGDI-LVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred ---------------------CCCCC-EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 01234 455665666777888999999999998888777666553
No 171
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.58 E-value=0.48 Score=46.71 Aligned_cols=117 Identities=13% Similarity=0.100 Sum_probs=88.5
Q ss_pred CCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCC--CHHHHHHHHhccc
Q 039716 859 KPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVM--DGLKATRLIRSFE 929 (1002)
Q Consensus 859 ~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~~ 929 (1002)
+++||+. |.+..-..++..+|+..||+|... ...++.++.+.+..+|+|.+-..|+.. .-.++.+.+|+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~- 81 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEA- 81 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhc-
Confidence 4678888 888888999999999999998875 467888899999999999999988743 223445555532
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC------CHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA------LSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~------~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.++|+ +-+.. ..++..++.+.|++.+....-+.++....|++.+
T Consensus 82 ------------------------~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 82 ------------------------GLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred ------------------------CCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 12345544 44433 4556678999999999999999999988888764
No 172
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=95.34 E-value=0.093 Score=61.73 Aligned_cols=110 Identities=25% Similarity=0.348 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhccCcEEEEecccccEEEeecc---CCCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeE
Q 039716 218 KRADNFLHFVLQNAPVVMGHQDKELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREI 294 (1002)
Q Consensus 218 ~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~ 294 (1002)
+....+|+.+++.+..++.+.|.+|++.++|.. ..+++.++++|++..+++ ... ......+++.++.|....+
T Consensus 113 ~~~~~~l~~il~~~~~~l~vvD~~G~~i~~N~~~~~~~gl~~e~~~gk~~~~v~-~~~---~~s~~l~vl~~~kp~~~~~ 188 (560)
T COG3829 113 RQLRQRLEAILDSIDDGLLVVDEDGIIIYYNKAYAKLLGLSPEEVLGKHLLDVV-SAG---EDSTLLEVLRTGKPIRDVV 188 (560)
T ss_pred HHHHHHHHHHHhhccCceEEEcCCCcEEEEcHHHHHHhCCCHHHHcCCcHHHHH-hcc---CCceehhhhhcCCcceeee
Confidence 444567888999999999999999999998875 467889999999998887 111 1123456778877753322
Q ss_pred EEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHH
Q 039716 295 TFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRK 336 (1002)
Q Consensus 295 ~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~ 336 (1002)
. +.. +.. ......|+ ..+|.++|++.++.|+++..+.
T Consensus 189 ~--~~~-~~~-~i~~~~pv-~~~g~l~G~v~~~~~~~~l~~l 225 (560)
T COG3829 189 Q--TYN-GNK-IIVNVAPV-YADGQLIGVVGISKDVSELERL 225 (560)
T ss_pred e--eec-CCc-eeEeeccE-ecCCcEEEEEEeecchHHHHHH
Confidence 1 111 211 23444454 5677999999999999976544
No 173
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=95.28 E-value=0.065 Score=68.44 Aligned_cols=116 Identities=14% Similarity=0.086 Sum_probs=76.0
Q ss_pred HHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCc----cee
Q 039716 221 DNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPA----KRE 293 (1002)
Q Consensus 221 ~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~----~~e 293 (1002)
+..+...++++|.+++..|.++++.++|..+ .|++.++++|++..+++++................+... ..+
T Consensus 11 ~~~~~~~le~~~~~i~~~d~~g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 90 (799)
T PRK11359 11 DGIFFPALEQNMMGAVLINENDEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 90 (799)
T ss_pred hhhHHHHHHhhcCcEEEEcCCCeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCccccccchHHHhhhhccCCcccccccee
Confidence 3444567889999999999999999998754 688999999999999887754444444444444444322 224
Q ss_pred EEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHH
Q 039716 294 ITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKRE 338 (1002)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~ 338 (1002)
+.+....+...++.+...|+ +..|.+ +++++..|||++++.++
T Consensus 91 ~~~~~~dG~~~~v~~~~~~~-~~~g~~-~~~~~~~DiT~~~~~~~ 133 (799)
T PRK11359 91 LQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKE 133 (799)
T ss_pred eEEecCCcCEEEEEEEeeee-ccCCce-EEEEEEeeccchhhhHH
Confidence 44444444444444555554 455665 45677899998655443
No 174
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.26 E-value=0.098 Score=63.36 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCccee
Q 039716 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKRE 293 (1002)
Q Consensus 217 l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e 293 (1002)
+++....+..+++++|.+|...|.+|++.++|..+ .++..++++|++..+++++.. ..++++.+.+....
T Consensus 75 ~e~e~~~L~aIL~sm~eGVi~vD~~G~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~~-------l~~~le~~~~~~~~ 147 (520)
T PRK10820 75 SEREHRALSALLEALPEPVLSIDMKGKVELANPASCQLFGQSEEKLRNHTAAQLINGFN-------FLRWLESEPQDSHN 147 (520)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCCeeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcch-------HHHHHHcCCCccce
Confidence 34456678999999999999999999999998754 577778899999999887532 23456666542211
Q ss_pred EEEEEeecCceEEEEEEeeee--cCCCCE--EEEEEEeechhH
Q 039716 294 ITFETELFGSKTFLIYVEPVF--SKSGET--IGVNYMGMDVTD 332 (1002)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~p~~--~~~G~~--~gi~~~~~DITe 332 (1002)
. .... +...+.+...|++ +.+|.. +|++.++.|+++
T Consensus 148 ~--~v~~-~g~~~~v~~~PI~~~d~~g~~~~~GaVivlrd~~~ 187 (520)
T PRK10820 148 E--HVVI-NGQDFLMEITPVYLQDENDQHVLVGAVVMLRSTAR 187 (520)
T ss_pred E--EEEE-CCEEEEEEEEeeeecCCCCceeEEEEEEEeccHHH
Confidence 1 1122 2356778889998 566654 899999999885
No 175
>PRK14083 HSP90 family protein; Provisional
Probab=94.69 E-value=0.019 Score=69.90 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=30.3
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCc-------cccCcCCCccccHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSA-------DHARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~-------~~~~~~~GtGLGLaI~k~Lv 640 (1002)
.|+|.|||+||+.+.+.+.|-....... ......|.-|+|+.-|-.++
T Consensus 64 ~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~va 118 (601)
T PRK14083 64 TLIVEDNGIGLTEEEVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLLSCFLVA 118 (601)
T ss_pred EEEEEeCCCCCCHHHHHHHHhhhccchhhhhhhcccccccccccccceEEEEEec
Confidence 5789999999999999987632221110 01112366788887665543
No 176
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=93.96 E-value=0.058 Score=66.62 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.6
Q ss_pred EEEEEecCCCCCcCcHhhhh
Q 039716 593 RCDVYDTGIGIPENALPTLF 612 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF 612 (1002)
++.|.|||+||+++++.+-|
T Consensus 73 ~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 73 TLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred EEEEEECCCCCCHHHHHHHh
Confidence 57899999999998876544
No 177
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=93.91 E-value=0.8 Score=43.73 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=68.1
Q ss_pred ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCC--CHHHHHHHHhccccCCCchhhhhh
Q 039716 866 EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVM--DGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 866 eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
|.+.+-..++..+|+..||+|... ...++.++.+...+||+|.+-..|... +..++++.+|+.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~------------ 77 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEA------------ 77 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHc------------
Confidence 666677788999999999998653 356788888999999999998876532 345566666642
Q ss_pred hhcccCCCCCCCCCCC-CccEEEEcCCCCHHHHHHHHHcCCCEEEeC
Q 039716 941 GIEQAMPSSGSSNHFK-RIPIIAMTANALSESAEECFANGMDSFVSK 986 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~-~ipIIalTa~~~~~~~~~~~~aG~d~~l~K 986 (1002)
.+ .++ |++.+.........+.+.|+|.|+..
T Consensus 78 --------------~~~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 78 --------------GLDDIP-VLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred --------------CCCCCe-EEEECCCCChhHHHHHHcCCeEEECC
Confidence 12 444 55666666666678899999888763
No 178
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.66 E-value=2.4 Score=41.56 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=78.3
Q ss_pred CeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCC-CH-HHHHHHHhcccc
Q 039716 860 PKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVM-DG-LKATRLIRSFED 930 (1002)
Q Consensus 860 ~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~m-dG-~e~~~~IR~~~~ 930 (1002)
++|++. |-+..-..++..+|+..||+|... .+.++.++.+.+..+|+|.+--.|... .. -++++.+++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~-- 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKL-- 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhc--
Confidence 355544 445566678899999999998764 468899999999999999986655321 11 2233444431
Q ss_pred CCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHh
Q 039716 931 TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~ 999 (1002)
....++ |++-+....++..+..++|+|+|+..=-++.+....|.+
T Consensus 81 -----------------------g~~~i~-vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 81 -----------------------GRPDIL-VVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred -----------------------CCCCCE-EEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 112344 445655667778889999999999887777777666654
No 179
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=93.57 E-value=0.18 Score=44.99 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCCCCcccccCCC----chhccCccchhhhhHHHHH-HHHhCCCcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEE
Q 039716 251 FPSLHEEDILGKT----DVEIFSGAGVKESQDFKRE-VLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNY 325 (1002)
Q Consensus 251 ~~~~~~e~iiGk~----~~e~~~~~~~~~~~~~~~~-vl~~g~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~ 325 (1002)
..|++++++ |.. ....+++++.+........ ....+.+...++++..+.+...++.....++++.+|.++.+++
T Consensus 11 i~G~~~~~~-~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~~~~~~~d~~g~~~~~~G 89 (91)
T PF08447_consen 11 IFGYSPEEI-GKPDFEEWLERIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEVRGRPIFDENGKPIRIIG 89 (91)
T ss_dssp HHTS-HHHH-TCBEHHHHHHHB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEEEEEEEETTTS-EEEEEE
T ss_pred HhCCCHHHh-ccCCHHHHHhhcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEE
Confidence 457888888 777 5566777777777776777 5666777777888877777778888999999999999998887
Q ss_pred E
Q 039716 326 M 326 (1002)
Q Consensus 326 ~ 326 (1002)
+
T Consensus 90 v 90 (91)
T PF08447_consen 90 V 90 (91)
T ss_dssp E
T ss_pred E
Confidence 6
No 180
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=93.13 E-value=0.18 Score=62.34 Aligned_cols=49 Identities=27% Similarity=0.433 Sum_probs=33.5
Q ss_pred EEEEEecCCCCCcCcHhh--------hhhhccCCCcc---ccCcCCC-ccccHHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALPT--------LFRKYMQVSAD---HARKYGG-TGLGLAICKQLVE 641 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~--------IF~pF~q~~~~---~~~~~~G-tGLGLaI~k~Lve 641 (1002)
.|+|.|+|.|||.+..+. +|..+..+..- .....+| .|.||+.|.-+.+
T Consensus 70 ~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls~vNalS~ 130 (631)
T PRK05559 70 SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVSVVNALSS 130 (631)
T ss_pred cEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCccccccCcccccchhhhhhhee
Confidence 377999999999999888 78764432211 1112233 6999999888854
No 181
>PRK05218 heat shock protein 90; Provisional
Probab=92.84 E-value=0.23 Score=61.19 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=30.3
Q ss_pred EEEEecCCCCCcCcHhhhhhhccCCC------------ccccCcCCCccccHHHHHHHH
Q 039716 594 CDVYDTGIGIPENALPTLFRKYMQVS------------ADHARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 594 i~V~DtGiGI~~e~l~~IF~pF~q~~------------~~~~~~~~GtGLGLaI~k~Lv 640 (1002)
|.|.|||+||+.+++...|...-+.. .....-.|-.|+|+.-|-.++
T Consensus 75 i~I~DnG~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va 133 (613)
T PRK05218 75 LTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVA 133 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhcc
Confidence 78999999999999998774433210 001122455789997555443
No 182
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=92.23 E-value=1 Score=42.65 Aligned_cols=94 Identities=12% Similarity=0.149 Sum_probs=64.7
Q ss_pred EEEecccccEEEeecc----CCCCCcccccCCCchhccCccchhh-hhHHHHHHHHhCCCcceeEEEEEeecCceEEEEE
Q 039716 235 MGHQDKELRYRFIYNH----FPSLHEEDILGKTDVEIFSGAGVKE-SQDFKREVLEKGLPAKREITFETELFGSKTFLIY 309 (1002)
Q Consensus 235 i~~~d~~~~~~~~~~~----~~~~~~e~iiGk~~~e~~~~~~~~~-~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~~~~~ 309 (1002)
+..-+.++.+.++-.. +.|+.++|++|++.++++++.+... .....++++.+|.....-+++....++-.+....
T Consensus 5 ~trhs~dgki~~~d~~~v~~~lgy~~~eLvG~s~y~~~H~~D~~~~~~~~~~~~~~~g~~~~~~yR~~~k~g~~vwvqt~ 84 (111)
T PF14598_consen 5 TTRHSLDGKITYVDSRAVSSLLGYLPEELVGRSIYDFVHPDDLQRVLKQHHREVLQKGQSVSPYYRFRTKNGGYVWVQTK 84 (111)
T ss_dssp EEEEETTSBEEEEETTHHHHHHSS-HHHHTTSBGGGGBSCCTHHHHHHHHHHHHHHHSSEEEEEEEEE-TTSSEEEEEEE
T ss_pred EEEECCCcEEEEEcCccChhhcCCCcHHHcCCchHHhCCHhhhhhHHHHHHHHHhhCCCcCcceEEEEecCCcEEEEEEE
Confidence 4456788999888655 2588999999999999999988886 7778889999998755556666655544444444
Q ss_pred Eeeeec-CCCCEEEEEEEee
Q 039716 310 VEPVFS-KSGETIGVNYMGM 328 (1002)
Q Consensus 310 ~~p~~~-~~G~~~gi~~~~~ 328 (1002)
..+.++ .+++.-.++++-.
T Consensus 85 ~~~~~n~~~~~~~~Iv~~n~ 104 (111)
T PF14598_consen 85 ATLFYNPWTSKPEFIVCTNT 104 (111)
T ss_dssp EEEEEETTTTCEEEEEEEEE
T ss_pred EEEEECCCCCCccEEEEEEE
Confidence 555554 3556555554443
No 183
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=92.22 E-value=4.5 Score=39.67 Aligned_cols=108 Identities=10% Similarity=0.065 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhcCCeEEE---EcCHHHHHHHHHcCCCcEEEEcCCCCCCC--HHHHHHHHhccccCCCchhhhhhhh
Q 039716 868 NKINVMVAKSMMKQLGHSIDV---VNNGVEAVHAVQCQNYDLILMDVCMPVMD--GLKATRLIRSFEDTGNWDAAAEAGI 942 (1002)
Q Consensus 868 n~~n~~~l~~~L~~~g~~v~~---a~~G~eAl~~~~~~~~DlIlmDi~MP~md--G~e~~~~IR~~~~~~~~~~~~~~~~ 942 (1002)
+..-..++..+|+..||+|.. ....++-++++.++.+|+|.+...|-..- --++.+.+|+.
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~-------------- 79 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEA-------------- 79 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHC--------------
Confidence 345567889999999999875 36789999999999999999988774221 22344455541
Q ss_pred cccCCCCCCCCCCCCccEEEEcCCC--CHHH----HHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 943 EQAMPSSGSSNHFKRIPIIAMTANA--LSES----AEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 943 ~~~~~~~~~~~~~~~ipIIalTa~~--~~~~----~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
....+ +|++-+.. ..++ ..++.+.|++......-.++++...|++.|
T Consensus 80 -----------gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 80 -----------GLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred -----------CCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 11233 45566532 2222 346889999999999999999999988765
No 184
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=90.91 E-value=3.5 Score=40.00 Aligned_cols=122 Identities=18% Similarity=0.241 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhh-hhHHHHHH-HHhC
Q 039716 213 LSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKE-SQDFKREV-LEKG 287 (1002)
Q Consensus 213 ~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~-~~~~~~~v-l~~g 287 (1002)
..+.++..+..++.++++.|.+++..|.++++.++|..+ .++...+.++....+......... ........ ....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (232)
T COG2202 103 AEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERRELELARALAEGRG 182 (232)
T ss_pred HHHHHHHHHHHHHHHHhhCCceEEEEeCCCCEEEeCHHHHHHhCCChHHhcCCChhheEecCCCchhhHHHHHHhhccCC
Confidence 334444455558899999999999999999999998754 456655555666555543322211 11112222 2222
Q ss_pred CCcceeEEEEEeecCc-eEEEEEEeeeecCCCCEEEEEEEeechhHHHH
Q 039716 288 LPAKREITFETELFGS-KTFLIYVEPVFSKSGETIGVNYMGMDVTDQVR 335 (1002)
Q Consensus 288 ~~~~~e~~~~~~~~~~-~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~ 335 (1002)
.....+.......+.. ........+... .|.+.++.....|+++..+
T Consensus 183 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~ 230 (232)
T COG2202 183 GPLEIEYRVRRKDGERVRWILSRISPVRD-DGEIVGVVGIARDITERKQ 230 (232)
T ss_pred CCcceEEEEEecCCCEEEEEEeeeeEecC-CCceEEEEEEEechHHHhh
Confidence 2334444444433332 233333334333 6888888888899987643
No 185
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=89.71 E-value=0.41 Score=59.00 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=32.5
Q ss_pred EEEEecCCCCCcCc--------Hhhhh-hhccCCCc--cccCcCCC-ccccHHHHHHHHHH
Q 039716 594 CDVYDTGIGIPENA--------LPTLF-RKYMQVSA--DHARKYGG-TGLGLAICKQLVEL 642 (1002)
Q Consensus 594 i~V~DtGiGI~~e~--------l~~IF-~pF~q~~~--~~~~~~~G-tGLGLaI~k~Lve~ 642 (1002)
|+|.|+|.|||.+. ++-+| .+....+- ...+..+| .|.||+.+.-+.+.
T Consensus 64 I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls~vnalS~~ 124 (625)
T TIGR01055 64 IEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGISVVNALSKR 124 (625)
T ss_pred EEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceecCCCcchhHHHHHHhcCe
Confidence 68999999999988 77777 33221111 11112233 69999999988873
No 186
>PTZ00130 heat shock protein 90; Provisional
Probab=89.17 E-value=0.46 Score=59.25 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=29.0
Q ss_pred EEEEEecCCCCCcCcHhhhhh--------hccC---CCccccCcCCCccccHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALPTLFR--------KYMQ---VSADHARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~--------pF~q---~~~~~~~~~~GtGLGLaI~k~Lv 640 (1002)
.|+|.|||+||+.+.+..-+- .|.+ .......-.|-.|+|++-|--++
T Consensus 136 tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVA 194 (814)
T PTZ00130 136 ILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVA 194 (814)
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeec
Confidence 467999999999998764331 1211 00111223456799998775443
No 187
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=88.85 E-value=0.45 Score=58.79 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.4
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCC
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVS 619 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~ 619 (1002)
.|.|.|||+||++++++-.+.++.+.+
T Consensus 54 ~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 54 LIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 478999999999999999999998764
No 188
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=88.40 E-value=3.3 Score=39.34 Aligned_cols=93 Identities=20% Similarity=0.394 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcC-CCCCC-CHHHHHHHHhccccCCCchhhhhhhh
Q 039716 868 NKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDV-CMPVM-DGLKATRLIRSFEDTGNWDAAAEAGI 942 (1002)
Q Consensus 868 n~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi-~MP~m-dG~e~~~~IR~~~~~~~~~~~~~~~~ 942 (1002)
.+.-...+..+|++.||+|... .+..+..+.+...+||+|.+.. ..+.. ...++++.+|+
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~--------------- 77 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKE--------------- 77 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHT---------------
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHh---------------
Confidence 3567788999999999999877 3567777888999999999998 44433 23455555554
Q ss_pred cccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHH--cCCCEEEeCC
Q 039716 943 EQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA--NGMDSFVSKP 987 (1002)
Q Consensus 943 ~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~--aG~d~~l~KP 987 (1002)
..++++|++ -+.......+.+++ .|+|..+.-.
T Consensus 78 -----------~~p~~~iv~-GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 78 -----------RNPNIPIVV-GGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp -----------TCTTSEEEE-EESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred -----------cCCCCEEEE-ECCchhcChHHHhccCcCcceecCCC
Confidence 234565554 44444555566665 7988876543
No 189
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=88.16 E-value=7.2 Score=41.03 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=70.5
Q ss_pred CCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCC--CHHHHHHHHhccc
Q 039716 859 KPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVM--DGLKATRLIRSFE 929 (1002)
Q Consensus 859 ~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~~ 929 (1002)
+.+||+. |-+.+=..++..+|+..||+|... ...++.++.+...+||+|.+-+.|+.. +..++++.+|+..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCC
Confidence 4578888 777777888999999999998753 356888889999999999999987754 2334455666421
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
..++++|++=-+... .+ -+-..|+|.|-.
T Consensus 162 ------------------------~~~~~~i~vGG~~~~-~~--~~~~~GaD~~~~ 190 (201)
T cd02070 162 ------------------------LRDKVKVMVGGAPVN-QE--FADEIGADGYAE 190 (201)
T ss_pred ------------------------CCcCCeEEEECCcCC-HH--HHHHcCCcEEEC
Confidence 123566665554433 33 466679998864
No 190
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=88.08 E-value=13 Score=36.13 Aligned_cols=105 Identities=11% Similarity=0.043 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHhcCCeEEE---EcCHHHHHHHHHcCCCcEEEEcCCCCCC-C-HHHHHHHHhccccCCCchhhhhhhh
Q 039716 868 NKINVMVAKSMMKQLGHSIDV---VNNGVEAVHAVQCQNYDLILMDVCMPVM-D-GLKATRLIRSFEDTGNWDAAAEAGI 942 (1002)
Q Consensus 868 n~~n~~~l~~~L~~~g~~v~~---a~~G~eAl~~~~~~~~DlIlmDi~MP~m-d-G~e~~~~IR~~~~~~~~~~~~~~~~ 942 (1002)
+.+-..++..+|+..||+|.- ....++-++++.++++|+|.+...|... . .-++.+.+|+.
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~-------------- 77 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEA-------------- 77 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHC--------------
Confidence 345567889999999999875 3577889999999999999998877533 2 23455566642
Q ss_pred cccCCCCCCCCCCCCccEEEEcCCC--C----HHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Q 039716 943 EQAMPSSGSSNHFKRIPIIAMTANA--L----SESAEECFANGMDSFVSKPVTFQKLKECLE 998 (1002)
Q Consensus 943 ~~~~~~~~~~~~~~~ipIIalTa~~--~----~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~ 998 (1002)
....+||+ +-+.. . .++..+..+.|++..+...-++.++...|+
T Consensus 78 -----------gl~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 78 -----------GLKDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred -----------CCCCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 11245544 44442 2 344567889999999998888888877665
No 191
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=88.07 E-value=0.76 Score=57.19 Aligned_cols=29 Identities=10% Similarity=0.339 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHhhhhhcCCCC---eeEEEE
Q 039716 481 DVLRIRQILTNLISNAIKFTPEG---KVGIKL 509 (1002)
Q Consensus 481 D~~rL~QIL~NLlsNAIKfT~~G---~I~I~v 509 (1002)
|+.-|.+++.-||.|||+-...| .|.|.+
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i 58 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTI 58 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEE
Confidence 55678999999999999843334 444444
No 192
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=87.90 E-value=5.4 Score=42.47 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=71.9
Q ss_pred CCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCC--CHHHHHHHHhccc
Q 039716 859 KPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVM--DGLKATRLIRSFE 929 (1002)
Q Consensus 859 ~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~~ 929 (1002)
..+|++. |.+.+=..++..+|+..||+|... ...++.++.+.+.++|+|.+-..|+.. +--++++.+++.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~- 166 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRR- 166 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhc-
Confidence 4578888 778888889999999999998865 357888889999999999999988732 123344555531
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHH---HHHcCCCEEEeCC
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE---CFANGMDSFVSKP 987 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~---~~~aG~d~~l~KP 987 (1002)
..+++|++--+-...+.... |-..|+|.|-.=.
T Consensus 167 -------------------------~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 167 -------------------------GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred -------------------------CCCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 23577766555444444332 3457999886433
No 193
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=86.98 E-value=2.2 Score=48.37 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=74.7
Q ss_pred HHHHHHHhccCcEEEEecccccEEEeecc--CCCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEe
Q 039716 222 NFLHFVLQNAPVVMGHQDKELRYRFIYNH--FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETE 299 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~~~~~~~~~~--~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~ 299 (1002)
+-+..++.+.|+=|...|.+.+++|.+.. .+..++ .++|++.....|+........ .-..+++|.....++..
T Consensus 290 ~e~naif~~lP~Ditfvdk~diV~ffs~~~rif~rt~-sviGr~v~~chpPksv~iv~k-i~~~fksG~kd~~efw~--- 364 (409)
T COG2461 290 EELNAIFKHLPVDITFVDKNDIVRFFSGGERIFPRTP-SVIGRRVQLCHPPKSVHIVEK-ILKDFKSGEKDFAEFWI--- 364 (409)
T ss_pred HHHHHHHhhCCCceEEecccceEEecCCcceecccCh-HhhCCcccCCCCCchHHHHHH-HHHHhhcCCcchHHHhc---
Confidence 45678899999989999999999886543 122233 368988777666644333322 22345566655555542
Q ss_pred ecCceEEEEEEeeeecCCCCEEEEEEEeechhHHH
Q 039716 300 LFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQV 334 (1002)
Q Consensus 300 ~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~ 334 (1002)
.-+.+...+...+++|++|+-.|++-+..|||..+
T Consensus 365 ~~~~~~i~i~Y~av~de~ge~~g~le~~qdi~~i~ 399 (409)
T COG2461 365 NMGDKFIHIRYFAVKDEEGEYLGTLEVVQDITRIK 399 (409)
T ss_pred cCCCceEEEEEEEEEcCCCceeeeehhhhhhHHHH
Confidence 23556677888899999999999999999999654
No 194
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=86.10 E-value=18 Score=35.84 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=84.1
Q ss_pred CCCeEEEE----ecCHHHHHHHHHHHHhcCCeEEE---EcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhcccc
Q 039716 858 PKPKILLV----EDNKINVMVAKSMMKQLGHSIDV---VNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFED 930 (1002)
Q Consensus 858 ~~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~---a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~ 930 (1002)
.+++||++ |-+..-..++...|+..||+|+. ...+.|++.+..++..|+|.+-.. .-...+++..++..
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl--~g~h~~l~~~lve~-- 86 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSL--DGGHLTLVPGLVEA-- 86 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEec--cchHHHHHHHHHHH--
Confidence 45677775 77777889999999999999986 479999999998999999887542 23445666666542
Q ss_pred CCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Q 039716 931 TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~ 998 (1002)
.+++|. .++. +++-+.-.+++.....+.|++.++.-=....+...-|.
T Consensus 87 ------lre~G~-------------~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~ 134 (143)
T COG2185 87 ------LREAGV-------------EDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLL 134 (143)
T ss_pred ------HHHhCC-------------cceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHH
Confidence 122222 2343 46778888888888889999999987666655544443
No 195
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=85.81 E-value=1.4 Score=54.57 Aligned_cols=29 Identities=10% Similarity=0.334 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHhhhhhcCCCC---eeEEEE
Q 039716 481 DVLRIRQILTNLISNAIKFTPEG---KVGIKL 509 (1002)
Q Consensus 481 D~~rL~QIL~NLlsNAIKfT~~G---~I~I~v 509 (1002)
|+.-|.+++.-||.||+.-...| .|.|.+
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i 65 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTI 65 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEE
Confidence 56678999999999999844344 455544
No 196
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.48 E-value=2.2 Score=41.56 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhhcCCCCeeEEEEEe
Q 039716 486 RQILTNLISNAIKFTPEGKVGIKLYV 511 (1002)
Q Consensus 486 ~QIL~NLlsNAIKfT~~G~I~I~v~~ 511 (1002)
--+..-||.||+||...|.|.|.+.+
T Consensus 65 gYl~NELiENAVKfra~geIvieasl 90 (184)
T COG5381 65 GYLANELIENAVKFRATGEIVIEASL 90 (184)
T ss_pred HHHHHHHHHhhhcccCCCcEEEEEEe
Confidence 34667899999999999998887754
No 197
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=84.40 E-value=0.53 Score=39.32 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=33.3
Q ss_pred HHHHHHHhccCcEEEEecccccEEEeeccCCCCCcccccCCCchhccCc
Q 039716 222 NFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEIFSG 270 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~~~~~~~~~~~~~~~~e~iiGk~~~e~~~~ 270 (1002)
++++.+++++|.+|+..| ++++.++|.++..+..-...|+....+++.
T Consensus 1 e~~~~l~~~~~~~i~i~d-~~~i~~~N~~~~~l~g~~~~~~~~~~~~~~ 48 (64)
T PF13188_consen 1 ERYRSLFDNSPDGILIID-GGRIIYVNPAFEELFGYSLEGEDIGQLFPD 48 (64)
T ss_dssp HHHHHHHCCSSSEEEEEE-TSBEEEE-HHHHHHHCS-HTCCCHHCTSTT
T ss_pred CHHHHHHHcCccceEEEE-CCChHHhhHHHHHHhCCCCCCCCHHHhCcc
Confidence 367889999999999999 889999998764332222556665555443
No 198
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=83.19 E-value=4.2 Score=38.40 Aligned_cols=111 Identities=17% Similarity=0.310 Sum_probs=80.0
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHH--HHhccccCCCc
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATR--LIRSFEDTGNW 934 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~--~IR~~~~~~~~ 934 (1002)
..+.+.+.||-|..-......+|...|.+|+.-.. +..+-...||.+|+.+-.+-..-..+-. ..|..
T Consensus 9 L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~lp~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al------ 78 (140)
T COG4999 9 LAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSALPPAHYDMMLLGVAVTFRENLTMQHERLAKAL------ 78 (140)
T ss_pred hccceeEEecCccHHHHHHHHHHhcCCceEEeccc----ccccChhhhceeeecccccccCCchHHHHHHHHHH------
Confidence 45678999999999999999999999988876443 4445567899999999777655544322 12221
Q ss_pred hhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHH
Q 039716 935 DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997 (1002)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l 997 (1002)
...+--|+++-..+ .-..++....|+-++|.||++...|...+
T Consensus 79 -------------------~mtd~vilalPs~~-qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 79 -------------------SMTDFVILALPSHA-QVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred -------------------hhhcceEEecCcHH-HHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 11233477776554 44567788999999999999999988733
No 199
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=83.04 E-value=2.1 Score=51.77 Aligned_cols=49 Identities=18% Similarity=0.416 Sum_probs=29.6
Q ss_pred EEEEEecCCCCCcCcHhhhh--------hhccCC-Ccc--ccCcCCCccccHHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALPTLF--------RKYMQV-SAD--HARKYGGTGLGLAICKQLVE 641 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF--------~pF~q~-~~~--~~~~~~GtGLGLaI~k~Lve 641 (1002)
+++|.||||||+.+++..-. ..|... ... .+.--|-.|+|++-|--+++
T Consensus 75 TLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAd 134 (623)
T COG0326 75 TLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVAD 134 (623)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeee
Confidence 46799999999998875432 122221 111 11123567999998766553
No 200
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=82.92 E-value=3.2 Score=39.59 Aligned_cols=91 Identities=11% Similarity=0.091 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCeEEEEcCHHHHHHHHHc-CCCcEEEEcCCCCC--CCHHHHHHHHhccccCCCchhhhhhhhcccCCCC
Q 039716 873 MVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPV--MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSS 949 (1002)
Q Consensus 873 ~~l~~~L~~~g~~v~~a~~G~eAl~~~~~-~~~DlIlmDi~MP~--mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~ 949 (1002)
..+...|++.|++|..+.+-.+|+..+.. ..++.|++|+. +. ....++++.||..
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~--------------------- 64 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-GEEEDEAQELLDKIRER--------------------- 64 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-HHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-cccchhHHHHHHHHHHh---------------------
Confidence 44677788889999999999999999987 57999999986 21 1235677888863
Q ss_pred CCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCCh
Q 039716 950 GSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTF 990 (1002)
Q Consensus 950 ~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~ 990 (1002)
...+||.+++.....+..-...-.-+++|+-..-+-
T Consensus 65 -----~~~iPVFl~~~~~~~~~l~~~~l~~v~~~i~l~~~t 100 (115)
T PF03709_consen 65 -----NFGIPVFLLAERDTTEDLPAEVLGEVDGFIWLFEDT 100 (115)
T ss_dssp -----STT-EEEEEESCCHHHCCCHHHHCCESEEEETTTTT
T ss_pred -----CCCCCEEEEecCCCcccCCHHHHhhccEEEEecCCC
Confidence 357999999987766666666677788898776543
No 201
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=81.98 E-value=10 Score=40.92 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=58.3
Q ss_pred ecCHHHHHHHHHHHHhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCC---------CCCHHHHHHHHhccccCCCch
Q 039716 866 EDNKINVMVAKSMMKQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMP---------VMDGLKATRLIRSFEDTGNWD 935 (1002)
Q Consensus 866 eDn~~n~~~l~~~L~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP---------~mdG~e~~~~IR~~~~~~~~~ 935 (1002)
.|.....+..+.+. +.|+.|. ++.+-...-..+..-.+++| || +..-.+.++.|++.
T Consensus 107 pd~~~tv~aa~~L~-~~Gf~vlpyc~dd~~~ar~l~~~G~~~v-----mPlg~pIGsg~Gi~~~~~I~~I~e~------- 173 (248)
T cd04728 107 PDPIETLKAAEILV-KEGFTVLPYCTDDPVLAKRLEDAGCAAV-----MPLGSPIGSGQGLLNPYNLRIIIER------- 173 (248)
T ss_pred cCHHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHcCCCEe-----CCCCcCCCCCCCCCCHHHHHHHHHh-------
Confidence 34444444444444 4599877 55444444444455578877 77 22116777888752
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
..+|||+=.+-..+++..+|++.|+|+++.
T Consensus 174 --------------------~~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 174 --------------------ADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred --------------------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 358999999999999999999999999874
No 202
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=80.99 E-value=2.4 Score=52.28 Aligned_cols=48 Identities=27% Similarity=0.408 Sum_probs=27.9
Q ss_pred EEEEEecCCCCCcCcHh--------hhhhhccCCC---ccccC-cCCCccccHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALP--------TLFRKYMQVS---ADHAR-KYGGTGLGLAICKQLV 640 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~--------~IF~pF~q~~---~~~~~-~~~GtGLGLaI~k~Lv 640 (1002)
.|+|.|+|.|||-+..+ -+|....... ..... ..|--|.||+.+.-+-
T Consensus 34 ~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~G~~G~Gls~vnalS 93 (594)
T smart00433 34 SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSGGLHGVGASVVNALS 93 (594)
T ss_pred eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccCCcccchHHHHHHhc
Confidence 47899999999976543 2333332111 11111 1233699999988874
No 203
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=80.76 E-value=19 Score=45.28 Aligned_cols=117 Identities=10% Similarity=0.135 Sum_probs=81.4
Q ss_pred CCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCC--CHHHHHHHHhccc
Q 039716 859 KPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVM--DGLKATRLIRSFE 929 (1002)
Q Consensus 859 ~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~~ 929 (1002)
.++|+|. |.+..-..++..+|+..||+|+.- .+.+++++.+....+|+|.+-..+... ..-++++.+|...
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G 661 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKKLG 661 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHHHHhcC
Confidence 4566654 445556678899999999999643 457899999999999999875555432 2445667777521
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.++++ |++.+...+++...+.++|+|+|+..=.+..+....+.+.|
T Consensus 662 -------------------------~~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 662 -------------------------REDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred -------------------------CCCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 12343 34556545666677889999999998888877777666543
No 204
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=80.51 E-value=4.8 Score=45.63 Aligned_cols=84 Identities=20% Similarity=0.123 Sum_probs=56.6
Q ss_pred CCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEE-
Q 039716 883 GHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII- 961 (1002)
Q Consensus 883 g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipII- 961 (1002)
|..+..+.+..++-..+. .-.+||+|..| +...++... + ++..+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~-------~~~~~~~~~-----------------------p--~~~~vv~ 46 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA--RAPLVLVDADM-------AEACAAAGL-----------------------P--RRRRVVL 46 (322)
T ss_pred CCceEEccCchhhhhccc--cCCeEEECchh-------hhHHHhccC-----------------------C--CCCCEEE
Confidence 566777777666544433 35789998654 112233211 1 222345
Q ss_pred EEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 962 AMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 962 alTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
+++...+.+....++.+|+.+||.+|++..+|...|.+.
T Consensus 47 v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 47 VGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred EeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 444456788899999999999999999999999988765
No 205
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=78.99 E-value=26 Score=36.73 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=67.0
Q ss_pred CeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCCCH--HHHHHHHhcccc
Q 039716 860 PKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVMDG--LKATRLIRSFED 930 (1002)
Q Consensus 860 ~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~mdG--~e~~~~IR~~~~ 930 (1002)
.+||+. |.+.+-..++..+|+..||+|... ...++.++.+....||+|.+-+.|+..-. .++.+.+|+..
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~- 163 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEG- 163 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcC-
Confidence 466655 455677788899999999998854 46688889999999999999988764322 33445555421
Q ss_pred CCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 931 TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
..++++|+ +-+..... .-|.+.|+|.|-.
T Consensus 164 -----------------------~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 164 -----------------------YRDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred -----------------------CCCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 12345555 44444433 3466789999864
No 206
>PRK00208 thiG thiazole synthase; Reviewed
Probab=77.55 E-value=23 Score=38.29 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCeEE-EE-cCHHHHHHHHHcCCCcEEEEcCCCC---------CCCHHHHHHHHhccccCCCchhhh
Q 039716 870 INVMVAKSMMKQLGHSID-VV-NNGVEAVHAVQCQNYDLILMDVCMP---------VMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 870 ~n~~~l~~~L~~~g~~v~-~a-~~G~eAl~~~~~~~~DlIlmDi~MP---------~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
...+..+.+. +.|+.|. ++ .|...|- .+..-.+++| || +..-.+.++.|++.
T Consensus 111 ~tv~aa~~L~-~~Gf~vlpyc~~d~~~ak-~l~~~G~~~v-----mPlg~pIGsg~gi~~~~~i~~i~e~---------- 173 (250)
T PRK00208 111 ETLKAAEILV-KEGFVVLPYCTDDPVLAK-RLEEAGCAAV-----MPLGAPIGSGLGLLNPYNLRIIIEQ---------- 173 (250)
T ss_pred HHHHHHHHHH-HCCCEEEEEeCCCHHHHH-HHHHcCCCEe-----CCCCcCCCCCCCCCCHHHHHHHHHh----------
Confidence 3334343333 4599877 55 4555544 4445578887 77 11115677777752
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
..+|||+=.+-..+++..+|++.|+|+++.
T Consensus 174 -----------------~~vpVIveaGI~tpeda~~AmelGAdgVlV 203 (250)
T PRK00208 174 -----------------ADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (250)
T ss_pred -----------------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 358999999999999999999999999874
No 207
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.38 E-value=96 Score=31.32 Aligned_cols=121 Identities=21% Similarity=0.210 Sum_probs=73.1
Q ss_pred HHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHH
Q 039716 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452 (1002)
Q Consensus 373 fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v 452 (1002)
+.+.+.|||=+|..+|..-++||.+..-++ +.++.|.+|+..+. +.|.|+|+--|..--.-..||-.+.-+ +
T Consensus 18 LcsRvCHDiISPvgAInnGLeLLdeg~add---DAm~LIrsSArnas----~rLqFaR~AFGAsgSag~~iDtgeaek-~ 89 (214)
T COG5385 18 LCSRVCHDIISPVGAINNGLELLDEGGADD---DAMDLIRSSARNAS----VRLQFARLAFGASGSAGASIDTGEAEK-A 89 (214)
T ss_pred HHHHHHhhccCcHHHhhchhhhhccCCccH---HHHHHHHHHhhhHH----HHHHHHHHHhcccccccccccchhHHH-H
Confidence 567799999999999999999998876553 45777888877665 557899886554333334566555422 2
Q ss_pred HHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCe-eEEEE
Q 039716 453 LQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK-VGIKL 509 (1002)
Q Consensus 453 ~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~-I~I~v 509 (1002)
.+.+... ..-++....+.. .....+. ..|.||+-=|--.-|.|+ +.+++
T Consensus 90 A~~~~a~--ekpe~~W~g~r~-----~~~Kn~v-kllLNl~lia~~aiPrGG~~~vtl 139 (214)
T COG5385 90 AQDFFAN--EKPELTWNGPRA-----ILPKNRV-KLLLNLFLIAYGAIPRGGSLVVTL 139 (214)
T ss_pred HHHHHhc--cCCcccccCChh-----hcCcchH-HHHHHHHHHHcccCCCCCeeEEEe
Confidence 2222221 112233322211 1122332 468888887777777754 44544
No 208
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=73.90 E-value=4.4 Score=48.95 Aligned_cols=95 Identities=12% Similarity=0.204 Sum_probs=66.8
Q ss_pred EEecccccEEEeecc---CCCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCceEEEEEEee
Q 039716 236 GHQDKELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEP 312 (1002)
Q Consensus 236 ~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~~~~~~~p 312 (1002)
.....|.++.|+-++ +.++.++|++|+..+++++..+...+..-...++.+|......+++-.+.+|-.|+-.....
T Consensus 278 tRhs~DmkityCedRisdlm~y~PeeLvGrS~Ye~~Ha~Ds~~v~KSh~dL~~KGQv~TgyYR~lak~GGyvWlQTqATV 357 (768)
T KOG3558|consen 278 TRHSLDMKITYCEDRISDLMDYEPEELVGRSCYEFVHALDSDRVRKSHHDLLTKGQVVTGYYRLLAKNGGYVWLQTQATV 357 (768)
T ss_pred EeeecceeEEEEchhHHHHhcCCHHHhhchhHHHhhhHhhhhHHHHHHHHHHhcCccchhHHHHHHhcCCeEEEEeeeEE
Confidence 344667788888655 45789999999999999999888888888888999998766555565555555555455555
Q ss_pred eecC-C---CCEEEEEEEeech
Q 039716 313 VFSK-S---GETIGVNYMGMDV 330 (1002)
Q Consensus 313 ~~~~-~---G~~~gi~~~~~DI 330 (1002)
+.+. + -.|+.|.++.-.+
T Consensus 358 i~~tkn~q~q~IicVnYVlS~~ 379 (768)
T KOG3558|consen 358 IYNTKNPQEQNIICVNYVLSNI 379 (768)
T ss_pred EecCCCCCcceEEEEEeeeccc
Confidence 5542 2 2466777766444
No 209
>PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long.
Probab=72.81 E-value=9.5 Score=37.46 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=59.9
Q ss_pred cccEEEeeccCCCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCceEEEEEEeeeecCCCCE
Q 039716 241 ELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKSGET 320 (1002)
Q Consensus 241 ~~~~~~~~~~~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~ 320 (1002)
+.+|+.+-..+......|+-|++..+++.+..........+.+...+.|.-...+.....+....+....-|+.+.+|.+
T Consensus 50 ~~r~RLaGt~i~~~~G~d~tG~~~~el~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~g~~~~~e~l~LPL~~~~~~v 129 (137)
T PF07310_consen 50 DFRYRLAGTRIVELFGRDLTGRRLSELFPPEDRERVRRAYRAVVERPAPVRARGRAEDADGRYLEYERLLLPLRSDGGTV 129 (137)
T ss_pred ceEEEEecHHHHHHhCCCCCCCCHHHhcChHhHHHHHHHHHHHHcCCceEEEEEEEecCCCCeeEEEEEEcccCCCCCCc
Confidence 34444443333334456889999999998887777888888888888876666655544444455666677999998987
Q ss_pred EEEEEE
Q 039716 321 IGVNYM 326 (1002)
Q Consensus 321 ~gi~~~ 326 (1002)
.-++++
T Consensus 130 ~rilG~ 135 (137)
T PF07310_consen 130 DRILGA 135 (137)
T ss_pred cEEEEe
Confidence 766654
No 210
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=70.87 E-value=31 Score=43.13 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=61.5
Q ss_pred HHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcce-eEEEEE
Q 039716 223 FLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKR-EITFET 298 (1002)
Q Consensus 223 ~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~-e~~~~~ 298 (1002)
.+..++++.+.+|...|.+|++.++|..+ .+++.++++|++..+++... .....++..+.+... +..+.
T Consensus 204 ~~~~il~~~~~gVl~vD~~G~I~~~N~aa~~llg~s~~~l~G~~i~~l~~~~------~~l~~vl~~~~~~~~~~~~l~- 276 (638)
T PRK11388 204 QLNALLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRAITELLTLP------AVLQQAIKQAHPLKHVEVTFE- 276 (638)
T ss_pred HHHHHHhccCCcEEEECCCCeEehhhHHHHHHhCcCHHHHCCCcHHHHhccc------hHHHHHHhcCCceeeEEEEEe-
Confidence 34557888899999999999999998753 46667789999988887531 123446666654322 22222
Q ss_pred eecCc-eEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 299 ELFGS-KTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 299 ~~~~~-~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
..+. ..+.+.+.|+.+..|. |++.+..+++
T Consensus 277 -~~g~~~~~~v~~~Pi~~~~g~--~~v~~l~~~~ 307 (638)
T PRK11388 277 -SQGQFIDAVITLKPIIEGQGT--SFILLLHPVE 307 (638)
T ss_pred -cCCceEEEEEEEEeecccCce--EEEEEehhhH
Confidence 1122 2456677888654443 3444444544
No 211
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=70.62 E-value=19 Score=45.01 Aligned_cols=96 Identities=11% Similarity=0.063 Sum_probs=65.2
Q ss_pred eEEEEecCH-HH-----HHHHHHHHHhcCCeEEEEcCHHHHHHHHHc-CCCcEEEEcCCCCCCCHHHHHHHHhccccCCC
Q 039716 861 KILLVEDNK-IN-----VMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLKATRLIRSFEDTGN 933 (1002)
Q Consensus 861 ~ILiVeDn~-~n-----~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~-~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~ 933 (1002)
+|+||+++- .+ ...|..-|++.|+.|..+.+..+++..+.. ...+.|++|..-. ..++++.||..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----- 73 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEY---SLDLCSDINQL----- 73 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcccceeEEEEecccc---hHHHHHHHHHh-----
Confidence 577776663 22 455677888899999999999999998874 4578888885332 24578888862
Q ss_pred chhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 934 WDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
...+||+++.............-.-.+.|+-
T Consensus 74 ---------------------~~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (713)
T PRK15399 74 ---------------------NEYLPLYAFINTHSTMDVSVQDMRMALWFFE 104 (713)
T ss_pred ---------------------CCCCCEEEEcCccccccCChhHhhhcceeee
Confidence 3579999998755444333333333455554
No 212
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=66.44 E-value=23 Score=44.30 Aligned_cols=81 Identities=10% Similarity=0.158 Sum_probs=57.7
Q ss_pred eEEEEecCH-HH-----HHHHHHHHHhcCCeEEEEcCHHHHHHHHHc-CCCcEEEEcCCCCCCCHHHHHHHHhccccCCC
Q 039716 861 KILLVEDNK-IN-----VMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLKATRLIRSFEDTGN 933 (1002)
Q Consensus 861 ~ILiVeDn~-~n-----~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~-~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~ 933 (1002)
+||+|+++. .+ ...|..-|++.|+.|..+.+..+++..+.. ...+.|++|..- . ..+++..||..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~----- 73 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDK--Y-NLELCEEISKM----- 73 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcccceeEEEEecch--h-hHHHHHHHHHh-----
Confidence 467776552 22 456777888899999999999999998874 457888888422 1 24477888752
Q ss_pred chhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHH
Q 039716 934 WDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~ 970 (1002)
...+||+++.......
T Consensus 74 ---------------------~~~~Pv~~~~~~~~~~ 89 (714)
T PRK15400 74 ---------------------NENLPLYAFANTYSTL 89 (714)
T ss_pred ---------------------CCCCCEEEEccccccc
Confidence 3569999998754333
No 213
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=66.25 E-value=20 Score=42.57 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=68.4
Q ss_pred cccEEEeeccCC---CCCcccccCCCchh-ccCcc-chhhhhHHHHHHHHhCCCcceeEEEEEeecCceEEEEEEeeeec
Q 039716 241 ELRYRFIYNHFP---SLHEEDILGKTDVE-IFSGA-GVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFS 315 (1002)
Q Consensus 241 ~~~~~~~~~~~~---~~~~e~iiGk~~~e-~~~~~-~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~~~~~~~p~~~ 315 (1002)
|.-+.|+|+.|+ |++..|+.-|+..- ++.++ ......+..++.++.......|+-+......+.|+++.+.|+++
T Consensus 39 D~PiVY~NdgFcKlsGY~RAevMQKs~tc~FMyGEltdk~ti~k~~~t~eN~~~~qfEillyKKN~TPvW~~vqiAPIrN 118 (971)
T KOG0501|consen 39 DWPIVYCNDGFCKLSGYHRAEVMQKSCTCSFMYGELTDKGTIEKVRQTLENYETNQFEILLYKKNRTPVWLLVQIAPIRN 118 (971)
T ss_pred ccceEEecCcchhccCccHHHHhcccceeeeeeccccchhhHHHHHHHHHhhhhcceeeEeeecCCCceEEEEEeecccC
Confidence 345567777664 66777777776542 33333 22334455677788777778888777776777899999999999
Q ss_pred CCCCEEEEEEEeechhHHH
Q 039716 316 KSGETIGVNYMGMDVTDQV 334 (1002)
Q Consensus 316 ~~G~~~gi~~~~~DITe~~ 334 (1002)
+...++-+++.+.|||-.+
T Consensus 119 e~d~VVLfLctFkDIT~~K 137 (971)
T KOG0501|consen 119 EKDKVVLFLCTFKDITALK 137 (971)
T ss_pred CCceEEEEEeecccchhhc
Confidence 9999999999999999654
No 214
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=64.69 E-value=69 Score=34.23 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=51.1
Q ss_pred CHHHHHHHHHcCCCc-EEEEcCCCCCC-CH--HHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 039716 891 NGVEAVHAVQCQNYD-LILMDVCMPVM-DG--LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966 (1002)
Q Consensus 891 ~G~eAl~~~~~~~~D-lIlmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~ 966 (1002)
+..+.++.+.....+ ++++|+.--++ .| +++++.+++. ..+|||+-.+-
T Consensus 146 ~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---------------------------~~ipvia~GGi 198 (230)
T TIGR00007 146 SLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKA---------------------------VNVPVIASGGV 198 (230)
T ss_pred CHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---------------------------CCCCEEEeCCC
Confidence 445566667777788 77788854332 22 6777888752 35899999999
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 039716 967 ALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 967 ~~~~~~~~~~~aG~d~~l~ 985 (1002)
.+.++..+++..|+++++.
T Consensus 199 ~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 199 SSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 9999999999999999875
No 215
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=63.84 E-value=73 Score=33.89 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=55.9
Q ss_pred HHHHHh-cCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCC-------CCCCCHHHHHHHHhccccCCCchhhhhhhhcccC
Q 039716 876 KSMMKQ-LGHSID-VVNNGVEAVHAVQCQNYDLILMDVC-------MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAM 946 (1002)
Q Consensus 876 ~~~L~~-~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~-------MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~ 946 (1002)
...+++ .|..+. .+.+..++. .+....+|+|.+... .+...++++++.|+..
T Consensus 111 i~~~~~~~~i~vi~~v~t~ee~~-~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~------------------ 171 (221)
T PRK01130 111 VKRIKEYPGQLLMADCSTLEEGL-AAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA------------------ 171 (221)
T ss_pred HHHHHhCCCCeEEEeCCCHHHHH-HHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh------------------
Confidence 334444 565543 456777775 445556898865321 1223457888888852
Q ss_pred CCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 947 PSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 947 ~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
-.+||++..+-...++..++++.|+|.++.
T Consensus 172 ---------~~iPvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 172 ---------VGCPVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred ---------CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 248999999888999999999999998864
No 216
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=62.81 E-value=34 Score=32.83 Aligned_cols=58 Identities=7% Similarity=0.215 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCeEEEE--cCHHHHHHHHHc-CCCcEEEEcCCCCCC-CHHHHHHHHhc
Q 039716 870 INVMVAKSMMKQLGHSIDVV--NNGVEAVHAVQC-QNYDLILMDVCMPVM-DGLKATRLIRS 927 (1002)
Q Consensus 870 ~n~~~l~~~L~~~g~~v~~a--~~G~eAl~~~~~-~~~DlIlmDi~MP~m-dG~e~~~~IR~ 927 (1002)
.-...+..+|++.|+.+... ..-.+.++.+.. .+||+|.+.+.-+.. ...++++.||+
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~ 64 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKE 64 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHH
Confidence 44567889999999876654 345666777766 899999999854443 35667778876
No 217
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=61.44 E-value=13 Score=38.44 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=44.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCC
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVC 912 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~ 912 (1002)
.+||+||...-...-|..+|+.+|+.|.+..|....+..+....||.|++.--
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPG 54 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPG 54 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCC
Confidence 47999999888888899999999999999888755556777888999999753
No 218
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=60.58 E-value=64 Score=34.78 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=51.8
Q ss_pred CHHHHHHHHHcCCCc-EEEEcCCCCCCC-H--HHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 039716 891 NGVEAVHAVQCQNYD-LILMDVCMPVMD-G--LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966 (1002)
Q Consensus 891 ~G~eAl~~~~~~~~D-lIlmDi~MP~md-G--~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~ 966 (1002)
+..+.++.+... ++ ++++|+..-++. | +++++.|.+. ..+||++-.+-
T Consensus 147 ~~~~~~~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~~---------------------------~~ipvi~~GGi 198 (233)
T cd04723 147 GPEELLRRLAKW-PEELIVLDIDRVGSGQGPDLELLERLAAR---------------------------ADIPVIAAGGV 198 (233)
T ss_pred CHHHHHHHHHHh-CCeEEEEEcCccccCCCcCHHHHHHHHHh---------------------------cCCCEEEeCCC
Confidence 366777777777 64 999999765432 2 5677777642 35899999999
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 039716 967 ALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 967 ~~~~~~~~~~~aG~d~~l~ 985 (1002)
.+.++..+++..|++..+.
T Consensus 199 ~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 199 RSVEDLELLKKLGASGALV 217 (233)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 9999999999999998874
No 219
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=60.46 E-value=99 Score=32.33 Aligned_cols=76 Identities=26% Similarity=0.329 Sum_probs=52.9
Q ss_pred cCCeEEE-EcCHHHHHHHHHcCCCcEEEEcCCCCCC--------CHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCC
Q 039716 882 LGHSIDV-VNNGVEAVHAVQCQNYDLILMDVCMPVM--------DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952 (1002)
Q Consensus 882 ~g~~v~~-a~~G~eAl~~~~~~~~DlIlmDi~MP~m--------dG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1002)
.|..+-. +.+-.++.+.. ....|.|...-..|.. .|++.++.+++.
T Consensus 103 ~~~~~g~~~~t~~e~~~a~-~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------------------ 157 (212)
T PRK00043 103 PDAIIGLSTHTLEEAAAAL-AAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA------------------------ 157 (212)
T ss_pred CCCEEEEeCCCHHHHHHHh-HcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh------------------------
Confidence 3444333 34556666555 4578999887555533 468888888852
Q ss_pred CCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 953 NHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 953 ~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.+.+||++..+- ..+...+++++|++.+..
T Consensus 158 --~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 158 --VGDIPIVAIGGI-TPENAPEVLEAGADGVAV 187 (212)
T ss_pred --cCCCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 234899988766 678899999999999985
No 220
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=59.21 E-value=70 Score=34.73 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=31.0
Q ss_pred CccEEEEcCCCC------HHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Q 039716 957 RIPIIAMTANAL------SESAEECFANGMDSFVSKPVTFQKLKECLE 998 (1002)
Q Consensus 957 ~ipIIalTa~~~------~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~ 998 (1002)
.+|+++|+-... +.....|.++|+++.+.-...++++...++
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~ 123 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFRE 123 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 578998887443 667888999999999996555566555443
No 221
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=58.78 E-value=1e+02 Score=33.38 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCeEEEEcCH---HHHHHHHHcCCCcEEEEcCCCCCCCH------HHHHHHHhccccCCCchhhhhhh
Q 039716 871 NVMVAKSMMKQLGHSIDVVNNG---VEAVHAVQCQNYDLILMDVCMPVMDG------LKATRLIRSFEDTGNWDAAAEAG 941 (1002)
Q Consensus 871 n~~~l~~~L~~~g~~v~~a~~G---~eAl~~~~~~~~DlIlmDi~MP~mdG------~e~~~~IR~~~~~~~~~~~~~~~ 941 (1002)
....+...+++.|..+..+-+. .+.++.+......+++| -.+|+-.+ .+.++++|+.
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~------------- 182 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNL------------- 182 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHh-------------
Confidence 3445667788899887665444 56777777778888888 56776422 3456666652
Q ss_pred hcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCC
Q 039716 942 IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987 (1002)
Q Consensus 942 ~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP 987 (1002)
.+..||++=.+-...++...+.++|+|.++.=-
T Consensus 183 -------------~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 183 -------------VGNKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred -------------cCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 123566544444478899999999999998754
No 222
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=58.06 E-value=14 Score=44.79 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=25.0
Q ss_pred EEEEEEecCCCCCcCcHhhhhhhccCCC
Q 039716 592 IRCDVYDTGIGIPENALPTLFRKYMQVS 619 (1002)
Q Consensus 592 l~i~V~DtGiGI~~e~l~~IF~pF~q~~ 619 (1002)
+.+.|.|+|.|+..+++..+-++||+.+
T Consensus 50 ~sv~ViDdG~G~~rdDl~~lg~ry~TSK 77 (1142)
T KOG1977|consen 50 FSVQVIDDGFGMGRDDLEKLGNRYFTSK 77 (1142)
T ss_pred eEEEEEecCCCccHHHHHHHHhhhhhhh
Confidence 5678999999999999999999998754
No 223
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=57.56 E-value=55 Score=30.93 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=46.3
Q ss_pred ecCHHHHHHHHHHHHhcCCeEEEEc---CHHHHHHHHHcCCCcEEEEcCCCCCCC-HHHHHHHHhc
Q 039716 866 EDNKINVMVAKSMMKQLGHSIDVVN---NGVEAVHAVQCQNYDLILMDVCMPVMD-GLKATRLIRS 927 (1002)
Q Consensus 866 eDn~~n~~~l~~~L~~~g~~v~~a~---~G~eAl~~~~~~~~DlIlmDi~MP~md-G~e~~~~IR~ 927 (1002)
|-++.....+..+|++.|+++.... .-.+.++.+...+||+|.+.+.+.... .+..++.+++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~~~~~~~~~~~~ 75 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALK 75 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEEecchHhHHHHHHHHHHHHH
Confidence 5667778889999999999988653 556777788889999999998776532 3444555554
No 224
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=56.39 E-value=1.8e+02 Score=31.99 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=61.9
Q ss_pred EEEec-CHHHHHHHHHHHHhcCCeE-EEEcCHHHHHHHHHcCCCcEEEEcC---CCCCCCHHHHHHHHhccccCCCchhh
Q 039716 863 LLVED-NKINVMVAKSMMKQLGHSI-DVVNNGVEAVHAVQCQNYDLILMDV---CMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 863 LiVeD-n~~n~~~l~~~L~~~g~~v-~~a~~G~eAl~~~~~~~~DlIlmDi---~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
|++.+ .+.....+....+.+|..+ ..+.|..|+..+. ...+|+|-..- .--..| ++.+..+....
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~-~~gadiIgin~rdl~~~~~d-~~~~~~l~~~~-------- 208 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERAL-KLGAPLIGINNRNLKTFEVD-LETTERLAPLI-------- 208 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH-HcCCCEEEECCCCcccccCC-HHHHHHHHHhC--------
Confidence 34444 3334444555556678774 4578888875554 45788776431 112223 66666665421
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
....|+|+.++-...++..++..+|+|.++.
T Consensus 209 -----------------p~~~~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 209 -----------------PSDRLVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred -----------------CCCCEEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 0236899999999999999999999999764
No 225
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=56.34 E-value=17 Score=26.84 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=34.7
Q ss_pred HHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccc
Q 039716 224 LHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAG 272 (1002)
Q Consensus 224 l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~ 272 (1002)
++.+++.++.+++..|.++.+.+++..+ .++...++.|+...+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (67)
T smart00091 3 LRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIHPED 54 (67)
T ss_pred HHHHHhhCCceEEEEcCCCeEEEECHHHHHHhCCCHHHHcCCcHHHhcCccc
Confidence 4567788999999999999888877644 445556677776666655443
No 226
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.20 E-value=1.2e+02 Score=35.93 Aligned_cols=105 Identities=10% Similarity=0.103 Sum_probs=63.1
Q ss_pred CCeEEEEecCHH---HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCH--HHHHHHHhccccCCC
Q 039716 859 KPKILLVEDNKI---NVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG--LKATRLIRSFEDTGN 933 (1002)
Q Consensus 859 ~~~ILiVeDn~~---n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG--~e~~~~IR~~~~~~~ 933 (1002)
+.+|++++-|+. -...++.+....|..+..+.+..++.+.+....||+||+|. |+... .+.+..+..+....
T Consensus 252 G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VLIDT--aGr~~rd~~~l~eL~~~~~~~- 328 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILIDT--AGYSHRNLEQLERMQSFYSCF- 328 (432)
T ss_pred CCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEEEEeC--CCCCccCHHHHHHHHHHHHhh-
Confidence 457888887772 22345555556677777776777777777778899999996 33321 23333443321100
Q ss_pred chhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHH----cCCCEEE
Q 039716 934 WDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA----NGMDSFV 984 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~----aG~d~~l 984 (1002)
....+.-.+++|+|....++...... .|.+++|
T Consensus 329 ------------------~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glI 365 (432)
T PRK12724 329 ------------------GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRIL 365 (432)
T ss_pred ------------------cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 00112345788888888877666654 4666655
No 227
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=55.34 E-value=1.7e+02 Score=30.86 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=52.4
Q ss_pred HhcCCeEEE-EcCHHHHHHHHHcCCCcEEEEc---CCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCC
Q 039716 880 KQLGHSIDV-VNNGVEAVHAVQCQNYDLILMD---VCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955 (1002)
Q Consensus 880 ~~~g~~v~~-a~~G~eAl~~~~~~~~DlIlmD---i~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1002)
...|..+.. +.+-.+ +..+....+|.|..- ..... .+++.++.+++.- .
T Consensus 118 ~~~g~~~~v~v~~~~e-~~~~~~~g~~~i~~t~~~~~~~~-~~~~~~~~l~~~~-------------------------~ 170 (217)
T cd00331 118 RELGMEVLVEVHDEEE-LERALALGAKIIGINNRDLKTFE-VDLNTTERLAPLI-------------------------P 170 (217)
T ss_pred HHcCCeEEEEECCHHH-HHHHHHcCCCEEEEeCCCccccC-cCHHHHHHHHHhC-------------------------C
Confidence 456877543 455555 444455567877543 11111 2357777777521 1
Q ss_pred CCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 956 KRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 956 ~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
..+|||+..+-...++..+++.+|+|+++.
T Consensus 171 ~~~pvia~gGI~s~edi~~~~~~Ga~gviv 200 (217)
T cd00331 171 KDVILVSESGISTPEDVKRLAEAGADAVLI 200 (217)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCCEEEE
Confidence 358999999999999999999999999873
No 228
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=55.12 E-value=33 Score=36.63 Aligned_cols=54 Identities=13% Similarity=0.353 Sum_probs=43.0
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCe--EEEEc--CHHHHHHHHHcCCCcEEEEcCCCC
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHS--IDVVN--NGVEAVHAVQCQNYDLILMDVCMP 914 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~--v~~a~--~G~eAl~~~~~~~~DlIlmDi~MP 914 (1002)
+|.-+|=|+......++.+++.|+. |.... +..+.++......||+||+|..=+
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~ 143 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKA 143 (219)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEeCChh
Confidence 8999999999999999999999963 44444 556666554458899999998544
No 229
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=54.09 E-value=55 Score=21.21 Aligned_cols=28 Identities=25% Similarity=0.378 Sum_probs=21.9
Q ss_pred EEEEEEeeeecCCCCEEEEEEEeechhH
Q 039716 305 TFLIYVEPVFSKSGETIGVNYMGMDVTD 332 (1002)
Q Consensus 305 ~~~~~~~p~~~~~G~~~gi~~~~~DITe 332 (1002)
++.....++.+..|.+.+++++..||++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~di~~ 42 (43)
T smart00086 15 WVLVSASPIRDEDGEVEGILGVVRDITE 42 (43)
T ss_pred EEEEEeEEEECCCCCEEEEEEEEEeccC
Confidence 3445567788888999999999999884
No 230
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=53.25 E-value=33 Score=35.62 Aligned_cols=65 Identities=18% Similarity=0.405 Sum_probs=46.1
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCe---EEEEcCHHHHHHHH--HcCCCcEEEEcCCCCCCCH---HHHHHHHh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHS---IDVVNNGVEAVHAV--QCQNYDLILMDVCMPVMDG---LKATRLIR 926 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~---v~~a~~G~eAl~~~--~~~~~DlIlmDi~MP~mdG---~e~~~~IR 926 (1002)
.+|..||-|+.....++.-++..|.. .....|...++... ....||+|++|- |=..+ .+++..|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHH
Confidence 47999999999999999999999853 34567888888776 357899999994 54444 34566664
No 231
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=53.21 E-value=1.8e+02 Score=30.12 Aligned_cols=85 Identities=9% Similarity=0.098 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCeEE----EEcCHHHHHHHHHcCCCcEEEEcCC-----CCCCCHHHHHHHHhccccCCCchhhhhhhh
Q 039716 872 VMVAKSMMKQLGHSID----VVNNGVEAVHAVQCQNYDLILMDVC-----MPVMDGLKATRLIRSFEDTGNWDAAAEAGI 942 (1002)
Q Consensus 872 ~~~l~~~L~~~g~~v~----~a~~G~eAl~~~~~~~~DlIlmDi~-----MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~ 942 (1002)
...+....++.|..+. .+.+..+++. ......|.|.+... .....+.+.++.++..
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-------------- 156 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-------------- 156 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh--------------
Confidence 3444556666786654 4468888887 55567888877421 1124567777777741
Q ss_pred cccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 943 EQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 943 ~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.++||++.-+- ..+...+++++|+|.++.
T Consensus 157 -------------~~~~i~~~GGI-~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 157 -------------LGVKVAVAGGI-TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred -------------cCCCEEEECCc-CHHHHHHHHhcCCCEEEE
Confidence 34777755554 689999999999998764
No 232
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=52.98 E-value=1.1e+02 Score=28.46 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=58.5
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcC-HHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNN-GVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~-G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
.+|.+||.++.... .+...|+.+...+- -.+.++.+.-.+.+.|++...-. ..-+.++..+|+.
T Consensus 22 ~~vvvid~d~~~~~----~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d-~~n~~~~~~~r~~---------- 86 (116)
T PF02254_consen 22 IDVVVIDRDPERVE----ELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD-EENLLIALLAREL---------- 86 (116)
T ss_dssp SEEEEEESSHHHHH----HHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH-HHHHHHHHHHHHH----------
T ss_pred CEEEEEECCcHHHH----HHHhcccccccccchhhhHHhhcCccccCEEEEccCCH-HHHHHHHHHHHHH----------
Confidence 46888888876533 33445666555432 24556666667788888876533 3446677788863
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.+..+||+...+ .+.......+|+|..+.
T Consensus 87 ----------------~~~~~ii~~~~~--~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 87 ----------------NPDIRIIARVND--PENAELLRQAGADHVIS 115 (116)
T ss_dssp ----------------TTTSEEEEEESS--HHHHHHHHHTT-SEEEE
T ss_pred ----------------CCCCeEEEEECC--HHHHHHHHHCCcCEEEC
Confidence 245778876654 56666778899998764
No 233
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=52.08 E-value=1e+02 Score=33.21 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=49.7
Q ss_pred HHHHHHHHcCC-CcEEEEcCCCCCC-CH--HHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC
Q 039716 893 VEAVHAVQCQN-YDLILMDVCMPVM-DG--LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANAL 968 (1002)
Q Consensus 893 ~eAl~~~~~~~-~DlIlmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~ 968 (1002)
.+.++.+.... -.+|++|+..-++ .| +++++.+++. ..+|||+-.+-.+
T Consensus 151 ~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~---------------------------~~ipvi~~GGi~s 203 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKA---------------------------TTIPVIASGGIRH 203 (234)
T ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHh---------------------------CCCCEEEeCCCCC
Confidence 45555555544 4699999986554 33 6667777742 3589999999999
Q ss_pred HHHHHHHHHcCCCEEEe
Q 039716 969 SESAEECFANGMDSFVS 985 (1002)
Q Consensus 969 ~~~~~~~~~aG~d~~l~ 985 (1002)
.++..++++.|++..+.
T Consensus 204 ~edi~~l~~~G~~~viv 220 (234)
T PRK13587 204 QQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999999875
No 234
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=51.72 E-value=12 Score=46.09 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=28.9
Q ss_pred EEEEecCCCCCcCcHhh-----------hhhhccCC---CccccCcCCCccccHHHHHHHHHHh
Q 039716 594 CDVYDTGIGIPENALPT-----------LFRKYMQV---SADHARKYGGTGLGLAICKQLVELM 643 (1002)
Q Consensus 594 i~V~DtGiGI~~e~l~~-----------IF~pF~q~---~~~~~~~~~GtGLGLaI~k~Lve~~ 643 (1002)
|+|.|+|.|||-+..+. +|.-.... +.......|-.|.|.+.|.-|-+.+
T Consensus 81 isV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ykvSGGlhGVG~svvNaLS~~~ 144 (602)
T PHA02569 81 VTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDTNRVTGGMNGVGSSLTNFFSVLF 144 (602)
T ss_pred EEEEECCCcccCCcccccccccccceEEEEEeeccccccCCcceeeCCcCCccceeeeccchhh
Confidence 78999999999865421 12111111 1111112234799999887776654
No 235
>PRK00811 spermidine synthase; Provisional
Probab=51.57 E-value=1.1e+02 Score=34.11 Aligned_cols=55 Identities=27% Similarity=0.492 Sum_probs=41.2
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcC------CeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCC
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLG------HSID-VVNNGVEAVHAVQCQNYDLILMDVCMPV 915 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g------~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~ 915 (1002)
.+|.+||=++....+.+..|...+ -++. ...||.+.+.. ...+||+|++|..-|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCcccEEEECCCCCC
Confidence 379999999999999999887532 2343 45777776654 4568999999987664
No 236
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.33 E-value=40 Score=37.02 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=34.1
Q ss_pred CCccEEEEcCC------CCHHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Q 039716 956 KRIPIIAMTAN------ALSESAEECFANGMDSFVSKPVTFQKLKECLE 998 (1002)
Q Consensus 956 ~~ipIIalTa~------~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~ 998 (1002)
..+|+|+||=. ..+....+|.++|+|+.|.-.+.+++....+.
T Consensus 88 ~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~ 136 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRA 136 (258)
T ss_pred CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 46899999843 44566889999999999998888887766654
No 237
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=49.77 E-value=2.4e+02 Score=27.01 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=31.9
Q ss_pred EEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHH
Q 039716 295 TFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRK 336 (1002)
Q Consensus 295 ~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~ 336 (1002)
.+.......+.+......+++.+|.++|++++-.|+|.....
T Consensus 71 nY~~~~~~Gk~lrSsT~~Ird~~g~~iG~LCIN~D~s~~~~~ 112 (118)
T PF08348_consen 71 NYKTKTKDGKILRSSTFFIRDENGKLIGALCINFDISALEQA 112 (118)
T ss_pred cccccCCCCCEEEEEEEEEECCCCCEEEEEEEEeccHHHHHH
Confidence 344444445667777788999999999999999999976544
No 238
>TIGR02373 photo_yellow photoactive yellow protein. Members of this family are photoactive yellow protein, a cytosolic, 14-kDa light-sensing protein which has a 4-hydroxycinnamyl (p-coumaric acid) chromophore covalently linked to a Cys residue. The enzyme 4-coumarate--CoA ligase as described by TIGR02372 is required for its biosynthesis. The modified Cys is in a PAS (pfam00989) domain, frequently found in signal transducing proteins. Members are known in alpha and gamma Proteobacteria that include Rhodobacter capsulatus, Halorhodospira halophila, Rhodospirillum centenum, etc.
Probab=49.74 E-value=1.1e+02 Score=29.69 Aligned_cols=42 Identities=10% Similarity=0.017 Sum_probs=34.0
Q ss_pred HhccCcEEEEecccccEEEeecc---CCCCCcccccCCCchhccC
Q 039716 228 LQNAPVVMGHQDKELRYRFIYNH---FPSLHEEDILGKTDVEIFS 269 (1002)
Q Consensus 228 l~~~p~~i~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~ 269 (1002)
++..|.++.-.|.+|++...|.+ ..|+.++.++|++.+.-+.
T Consensus 22 lD~lpFGvI~lD~~G~V~~YN~aE~~~sg~~p~~vlGr~FF~eVA 66 (124)
T TIGR02373 22 FDALPFGAIQLDGSGVILRYNAAEGRITGRDPERVIGRNFFKEVA 66 (124)
T ss_pred hhcCCcceEEECCCCEEEEEecchhhhcCCChhhhhchhhhhhcc
Confidence 67899999999999999876643 5678899999999765443
No 239
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=49.27 E-value=1.8e+02 Score=28.91 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=47.9
Q ss_pred HHHHHHHHHHH--HhccCcEEEEecccccEEEeeccCC----CCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCc
Q 039716 217 LKRADNFLHFV--LQNAPVVMGHQDKELRYRFIYNHFP----SLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPA 290 (1002)
Q Consensus 217 l~~~~~~l~~i--l~~~p~~i~~~d~~~~~~~~~~~~~----~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~ 290 (1002)
|++....|+.+ +..+-+.++..+.++.+..+...-+ +...++++|+..... ......+++++|.+.
T Consensus 20 L~~l~~~wql~ADLs~aDl~l~v~~~~~~~vvvA~~rP~t~~t~y~~dvVG~~~~~~--------~ep~v~~a~~tg~~~ 91 (145)
T PF12282_consen 20 LQRLVADWQLLADLSFADLFLWVPTKDGNAVVVAQARPSTAPTLYPDDVVGKVALRE--------NEPAVDRALETGRPV 91 (145)
T ss_dssp HHHHHHHTHHHHHHHTSEEEEEEE-TTS-EEEEEEE--SSS--S--S--TT-EE-GG--------GSHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEEcCCCCEEEEEEeCCCCCCCCCCCCCCCCccCcc--------ccHHHHHHHHhCCce
Confidence 44444444444 4567789999988887555544322 345678888865332 234556788888764
Q ss_pred ceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhH
Q 039716 291 KREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTD 332 (1002)
Q Consensus 291 ~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe 332 (1002)
...-. ...+.......+.|+++.. .++|++..-.++..
T Consensus 92 ~~~~~---~~~~~~~v~~~~~PI~~~~-~vIaVl~~~~~~~~ 129 (145)
T PF12282_consen 92 RGGRA---VWQGGVPVRQEVVPIRRNG-RVIAVLIRETNLSA 129 (145)
T ss_dssp ----------------EEEEEEEEETT-EEEEEEEEE--GGG
T ss_pred ecCCc---cccCCceeEEEEEEEEECC-EEEEEEEEEccccc
Confidence 32211 1123345567788999875 99998875555554
No 240
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=49.15 E-value=1.2e+02 Score=31.48 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=56.3
Q ss_pred HHhcCCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCC
Q 039716 879 MKQLGHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKR 957 (1002)
Q Consensus 879 L~~~g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1002)
.+..|.. +.-+.+..|+.++.. ..+|.|-++- ++.. |.+.++.++.. .++
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~~-~Gad~i~~~p-~~~~-g~~~~~~l~~~--------------------------~~~ 143 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQALE-LGADIVKLFP-AEAV-GPAYIKALKGP--------------------------FPQ 143 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHHH-CCCCEEEEcC-Cccc-CHHHHHHHHhh--------------------------CCC
Confidence 3344544 334668889888764 5789998864 4444 99999999852 345
Q ss_pred ccEEEEcCCCCHHHHHHHHHcCCCEEEeC
Q 039716 958 IPIIAMTANALSESAEECFANGMDSFVSK 986 (1002)
Q Consensus 958 ipIIalTa~~~~~~~~~~~~aG~d~~l~K 986 (1002)
+|+++.-+- ..+...+++++|++.+-.-
T Consensus 144 ~p~~a~GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 144 VRFMPTGGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred CeEEEeCCC-CHHHHHHHHHCCCEEEEEc
Confidence 888887766 7899999999999876543
No 241
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=49.10 E-value=1.4e+02 Score=33.38 Aligned_cols=45 Identities=27% Similarity=0.370 Sum_probs=39.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHcCCCE------EEeCCCChHHHHHHHHhhc
Q 039716 957 RIPIIAMTANALSESAEECFANGMDS------FVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~aG~d~------~l~KP~~~~~L~~~l~~~l 1001 (1002)
++|||+.-+-.+.++..+++.+|+|. ++.+|--+.++..-|.+|+
T Consensus 234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~ 284 (300)
T TIGR01037 234 DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFL 284 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHH
Confidence 48999999999999999999999986 6789977788888887764
No 242
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=48.98 E-value=80 Score=34.08 Aligned_cols=61 Identities=21% Similarity=0.221 Sum_probs=43.2
Q ss_pred HHcCCCcEEEEcCCCCCC--CHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHH
Q 039716 899 VQCQNYDLILMDVCMPVM--DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976 (1002)
Q Consensus 899 ~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~ 976 (1002)
+.....|.|-+|...|+- --++.++.|++. .+.+|||+.-+-.+.++..+++
T Consensus 157 l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~--------------------------~~~ipIIgNGgI~s~eda~e~l 210 (231)
T TIGR00736 157 LVDDGFDGIHVDAMYPGKPYADMDLLKILSEE--------------------------FNDKIIIGNNSIDDIESAKEML 210 (231)
T ss_pred HHHcCCCEEEEeeCCCCCchhhHHHHHHHHHh--------------------------cCCCcEEEECCcCCHHHHHHHH
Confidence 334445555556555553 237778888752 2348999999999999999999
Q ss_pred HcCCCEEEe
Q 039716 977 ANGMDSFVS 985 (1002)
Q Consensus 977 ~aG~d~~l~ 985 (1002)
..|+|.+..
T Consensus 211 ~~GAd~Vmv 219 (231)
T TIGR00736 211 KAGADFVSV 219 (231)
T ss_pred HhCCCeEEE
Confidence 999998753
No 243
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=48.80 E-value=16 Score=46.03 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=19.6
Q ss_pred CeeEEccH---HHHHHHHHHHHhhhhhcCCCC
Q 039716 475 PIEVIGDV---LRIRQILTNLISNAIKFTPEG 503 (1002)
Q Consensus 475 p~~v~gD~---~rL~QIL~NLlsNAIKfT~~G 503 (1002)
|-..+|+- .-|.+++.-||.|||.-.-.|
T Consensus 25 PgMYIGst~~~~GLhhlv~EivdNaiDE~~AG 56 (756)
T PRK14939 25 PGMYIGDTDDGTGLHHMVYEVVDNAIDEALAG 56 (756)
T ss_pred CCCeeCCCCCCcchhhhhhHhhcccccccccC
Confidence 33445543 458999999999999833334
No 244
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=48.32 E-value=72 Score=38.65 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhccCcEEEEecccccEEEeeccCCCCCcccccCCCchhc
Q 039716 218 KRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEI 267 (1002)
Q Consensus 218 ~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~~~~~~e~iiGk~~~e~ 267 (1002)
.+.+..+..++.+.|++|...+..+.+.|+|......-.++.+|+...++
T Consensus 71 ~~~~~~~~~al~nmPiGii~~~e~~~veW~Npf~~~if~~~~~~~~~~~~ 120 (655)
T COG3887 71 YQAEKSLEEALTNMPIGIILFNETNKVEWVNPFASKIFNKNEIGESLSEL 120 (655)
T ss_pred HHHHHHHHHHHHhCCceEEEEcCCCceEEecHHHHHhcChhhhhhhHHHH
Confidence 34567888999999999999998899998876544433444555444443
No 245
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.01 E-value=46 Score=27.94 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=31.3
Q ss_pred HHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Q 039716 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQ 420 (1002)
Q Consensus 372 ~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~ 420 (1002)
+.+...-||+.|-|..|.|++++ .-.++..+|+..+.........
T Consensus 14 ~~lR~~RHD~~NhLqvI~gllql----g~~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 14 DSLRAQRHDFLNHLQVIYGLLQL----GKYEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999875 2234556777766666555543
No 246
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=47.46 E-value=2.5e+02 Score=29.75 Aligned_cols=79 Identities=19% Similarity=0.202 Sum_probs=53.6
Q ss_pred HHhcC-CeE-EEEcCHHHHHHHHHcCCCcEEEEcCC-------CCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCC
Q 039716 879 MKQLG-HSI-DVVNNGVEAVHAVQCQNYDLILMDVC-------MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSS 949 (1002)
Q Consensus 879 L~~~g-~~v-~~a~~G~eAl~~~~~~~~DlIlmDi~-------MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~ 949 (1002)
+++.| ..+ ..+.+..++..... ..+|+|..-.. .+...+++.++.++..
T Consensus 118 ~~~~g~~~iiv~v~t~~ea~~a~~-~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~--------------------- 175 (219)
T cd04729 118 IHEEYNCLLMADISTLEEALNAAK-LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA--------------------- 175 (219)
T ss_pred HHHHhCCeEEEECCCHHHHHHHHH-cCCCEEEccCccccccccCCCCCCHHHHHHHHHh---------------------
Confidence 33445 443 34567777755544 56888754211 1223457888888852
Q ss_pred CCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 950 GSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 950 ~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
-++||++..+-.+.++..++++.|+|.++.
T Consensus 176 ------~~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 176 ------LGIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred ------cCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 258999999888999999999999999875
No 247
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=45.35 E-value=71 Score=33.79 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=43.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCC--eEEE-EcCHHHHHHHHHc----CCCcEEEEcCC
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGH--SIDV-VNNGVEAVHAVQC----QNYDLILMDVC 912 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~--~v~~-a~~G~eAl~~~~~----~~~DlIlmDi~ 912 (1002)
..+|.-+|=|+.+..+.+.++++.|+ .|.. ..++.+.+..+.. ..||+||+|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc
Confidence 34899999999999999999999986 4554 4788888887654 36999999984
No 248
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=45.24 E-value=33 Score=41.14 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.5
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCC
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVS 619 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~ 619 (1002)
.+.|+|+|.||-.++++-+-++|.+.+
T Consensus 58 LlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 58 LLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred EEEEecCCCccchhhhHHHHHHhhhhh
Confidence 356899999999999999999997653
No 249
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=45.07 E-value=1.9e+02 Score=31.60 Aligned_cols=43 Identities=30% Similarity=0.515 Sum_probs=35.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHcC-CCEEEe------CCCChHHHHHHHHh
Q 039716 957 RIPIIAMTANALSESAEECFANG-MDSFVS------KPVTFQKLKECLEQ 999 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~aG-~d~~l~------KP~~~~~L~~~l~~ 999 (1002)
.+|||+.-+-.+.++..+++..| ++..+. +=+++.+++..++.
T Consensus 199 ~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~ 248 (254)
T TIGR00735 199 KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAE 248 (254)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHH
Confidence 58999999999999999999988 998554 55677777776653
No 250
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=44.16 E-value=96 Score=33.13 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=50.7
Q ss_pred CHHHHHHHHHcCCCc-EEEEcCCCCCC-CH--HHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 039716 891 NGVEAVHAVQCQNYD-LILMDVCMPVM-DG--LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966 (1002)
Q Consensus 891 ~G~eAl~~~~~~~~D-lIlmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~ 966 (1002)
+..+..+.+....++ ++++|+..-++ .| +++++.+++. ..+|||+-.+-
T Consensus 147 ~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~---------------------------~~ipvia~GGi 199 (233)
T PRK00748 147 TAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAA---------------------------VPIPVIASGGV 199 (233)
T ss_pred CHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHh---------------------------CCCCEEEeCCC
Confidence 445666666666666 78888764322 34 6888888752 24899999999
Q ss_pred CCHHHHHHHHHcC-CCEEEe
Q 039716 967 ALSESAEECFANG-MDSFVS 985 (1002)
Q Consensus 967 ~~~~~~~~~~~aG-~d~~l~ 985 (1002)
.+.++..++++.| +++++.
T Consensus 200 ~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 200 SSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCHHHHHHHHHcCCccEEEE
Confidence 9999999999988 999874
No 251
>PRK14974 cell division protein FtsY; Provisional
Probab=43.81 E-value=2.1e+02 Score=32.71 Aligned_cols=67 Identities=10% Similarity=0.204 Sum_probs=40.9
Q ss_pred CCeEEEEecCHH---HHHHHHHHHHhcCCeEEEEcCH-------HHHHHHHHcCCCcEEEEcCCCCCCC--HHHHHHHHh
Q 039716 859 KPKILLVEDNKI---NVMVAKSMMKQLGHSIDVVNNG-------VEAVHAVQCQNYDLILMDVCMPVMD--GLKATRLIR 926 (1002)
Q Consensus 859 ~~~ILiVeDn~~---n~~~l~~~L~~~g~~v~~a~~G-------~eAl~~~~~~~~DlIlmDi~MP~md--G~e~~~~IR 926 (1002)
+.+|+++.-+.. ....++......|..+.....| .+|++......+|+||+|-- +.. -.+++..++
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTa--Gr~~~~~~lm~eL~ 245 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTA--GRMHTDANLMDELK 245 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECC--CccCCcHHHHHHHH
Confidence 457888876642 3345666667778776655433 35556666778999999974 332 234445554
Q ss_pred c
Q 039716 927 S 927 (1002)
Q Consensus 927 ~ 927 (1002)
.
T Consensus 246 ~ 246 (336)
T PRK14974 246 K 246 (336)
T ss_pred H
Confidence 4
No 252
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=43.21 E-value=2.8e+02 Score=29.51 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=54.0
Q ss_pred HHHHhcCCeEEE-EcCHHHHHHHHHcCCCcEEEEcCCCCC-------CCHHHHHHHHhccccCCCchhhhhhhhcccCCC
Q 039716 877 SMMKQLGHSIDV-VNNGVEAVHAVQCQNYDLILMDVCMPV-------MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948 (1002)
Q Consensus 877 ~~L~~~g~~v~~-a~~G~eAl~~~~~~~~DlIlmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~ 948 (1002)
..+++.+..+.. +.+..++.. +.....|.|+.+-.-++ ..+++.++++++.
T Consensus 96 ~~~~~~~i~~i~~v~~~~~~~~-~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~-------------------- 154 (236)
T cd04730 96 ERLKAAGIKVIPTVTSVEEARK-AEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDA-------------------- 154 (236)
T ss_pred HHHHHcCCEEEEeCCCHHHHHH-HHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHH--------------------
Confidence 344445655443 345555544 44456898887542111 2457788888752
Q ss_pred CCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeC
Q 039716 949 SGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSK 986 (1002)
Q Consensus 949 ~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~K 986 (1002)
..+||++.-+-...++..+++..|+|.+..-
T Consensus 155 -------~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 -------VDIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred -------hCCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 2479999888877799999999999987754
No 253
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=41.78 E-value=31 Score=36.11 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=39.3
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEE
Q 039716 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909 (1002)
Q Consensus 862 ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlm 909 (1002)
|||||-....-.-+...|++.|+.+.+..+....++.+....||.|++
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEE
Confidence 899998888888899999999999998877654555566668998876
No 254
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=41.73 E-value=1.1e+02 Score=34.12 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=51.6
Q ss_pred EEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 039716 887 DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966 (1002)
Q Consensus 887 ~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~ 966 (1002)
..+.+-+||.+++. ..+|+|++| +|+.-+=.++.+.+|.. .++ .++..|+.
T Consensus 193 VEv~tleea~ea~~-~GaDiI~lD-n~~~e~l~~~v~~l~~~--------------------------~~~-~~leasGG 243 (277)
T TIGR01334 193 VEADTIEQALTVLQ-ASPDILQLD-KFTPQQLHHLHERLKFF--------------------------DHI-PTLAAAGG 243 (277)
T ss_pred EECCCHHHHHHHHH-cCcCEEEEC-CCCHHHHHHHHHHHhcc--------------------------CCC-EEEEEECC
Confidence 45689999999886 459999999 56555555566666531 122 37889999
Q ss_pred CCHHHHHHHHHcCCCEEE
Q 039716 967 ALSESAEECFANGMDSFV 984 (1002)
Q Consensus 967 ~~~~~~~~~~~aG~d~~l 984 (1002)
...+...+....|+|-+.
T Consensus 244 I~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 244 INPENIADYIEAGIDLFI 261 (277)
T ss_pred CCHHHHHHHHhcCCCEEE
Confidence 999999999999998754
No 255
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=41.64 E-value=74 Score=34.87 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=34.4
Q ss_pred CCccEEEEcCCCC------HHHHHHHHHcCCCEEEeCCCChHHHHHHHHh
Q 039716 956 KRIPIIAMTANAL------SESAEECFANGMDSFVSKPVTFQKLKECLEQ 999 (1002)
Q Consensus 956 ~~ipIIalTa~~~------~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~ 999 (1002)
..+|++.|+=... .....+|.++|+|+++.-....++....+..
T Consensus 86 ~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~ 135 (256)
T TIGR00262 86 PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEA 135 (256)
T ss_pred CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHH
Confidence 3579888887655 6778899999999999988888777665543
No 256
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=41.36 E-value=1.6e+02 Score=30.38 Aligned_cols=70 Identities=26% Similarity=0.279 Sum_probs=49.5
Q ss_pred EEEcCHHHHHHHHHcCCCcEEEEcCCCCC--------CCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCc
Q 039716 887 DVVNNGVEAVHAVQCQNYDLILMDVCMPV--------MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958 (1002)
Q Consensus 887 ~~a~~G~eAl~~~~~~~~DlIlmDi~MP~--------mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 958 (1002)
..+.+..++.+ ......|+|.++-..|. ..|++.++.+... .+.+
T Consensus 101 ~s~h~~~e~~~-a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~--------------------------~~~~ 153 (196)
T TIGR00693 101 VSTHNLEELAE-AEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT--------------------------SIDI 153 (196)
T ss_pred EeCCCHHHHHH-HhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--------------------------cCCC
Confidence 34567777765 44568899987765441 2478888888742 1348
Q ss_pred cEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 959 PIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 959 pIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
||+++-+- ..+...++++.|++++.
T Consensus 154 pv~a~GGI-~~~~~~~~~~~G~~gva 178 (196)
T TIGR00693 154 PIVAIGGI-TLENAAEVLAAGADGVA 178 (196)
T ss_pred CEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 98888665 57888899999999875
No 257
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=40.95 E-value=3.8e+02 Score=30.51 Aligned_cols=97 Identities=13% Similarity=0.080 Sum_probs=61.4
Q ss_pred eEEEEe----cCHHHHHHHHHHHHhcC-CeEEE--EcCHHHHHHHHHcCCCcEEEEcCC----------CC-CCC--HHH
Q 039716 861 KILLVE----DNKINVMVAKSMMKQLG-HSIDV--VNNGVEAVHAVQCQNYDLILMDVC----------MP-VMD--GLK 920 (1002)
Q Consensus 861 ~ILiVe----Dn~~n~~~l~~~L~~~g-~~v~~--a~~G~eAl~~~~~~~~DlIlmDi~----------MP-~md--G~e 920 (1002)
.++.+| +....++.++.+=+... ..|.. +.+.++|..+.. ...|.|..-+. .. ... ++.
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~-aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ 191 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN-AGADATKVGIGPGKVCITKIKTGFGTGGWQLA 191 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH-cCcCEEEECCCCCcccccccccCCCCCccHHH
Confidence 577774 33334444555544443 33333 568888876665 56888664321 00 112 455
Q ss_pred HHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 921 ~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
+++.++.. .++|||+-.+-....+..+|+..|++.+..
T Consensus 192 ai~~~~~~---------------------------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v 229 (326)
T PRK05458 192 ALRWCAKA---------------------------ARKPIIADGGIRTHGDIAKSIRFGATMVMI 229 (326)
T ss_pred HHHHHHHH---------------------------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe
Confidence 66666631 248999999999999999999999998754
No 258
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=40.58 E-value=87 Score=34.86 Aligned_cols=62 Identities=21% Similarity=0.331 Sum_probs=50.2
Q ss_pred eEEEEecCHHHHHHHHHHHHhc--CC---eEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHH
Q 039716 861 KILLVEDNKINVMVAKSMMKQL--GH---SID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKAT 922 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~--g~---~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~ 922 (1002)
.|+++|-+....++-+.+|..+ || +|. ...||..-++.+..+.||+|+.|..=|++.+-.+.
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALF 214 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHH
Confidence 5899999988888888888754 44 333 34599999999999999999999999999886543
No 259
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=40.31 E-value=3e+02 Score=25.54 Aligned_cols=41 Identities=29% Similarity=0.451 Sum_probs=30.1
Q ss_pred ccEEEEcCCCCHHHHHHHHHcCCCEEEeCCC--ChHHHHHHHH
Q 039716 958 IPIIAMTANALSESAEECFANGMDSFVSKPV--TFQKLKECLE 998 (1002)
Q Consensus 958 ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~--~~~~L~~~l~ 998 (1002)
+-+|+.......+....|+++|.+-|+-||+ +.+++.++++
T Consensus 65 ~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~ 107 (120)
T PF01408_consen 65 AVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVE 107 (120)
T ss_dssp EEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHH
T ss_pred EEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHH
Confidence 3344444444566778899999999999999 7777777665
No 260
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=39.28 E-value=3.3e+02 Score=28.94 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=47.9
Q ss_pred CHHHHHHHHHcCCCc-EEEEcCCCCCC---CHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 039716 891 NGVEAVHAVQCQNYD-LILMDVCMPVM---DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966 (1002)
Q Consensus 891 ~G~eAl~~~~~~~~D-lIlmDi~MP~m---dG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~ 966 (1002)
+..+.++.+.....+ ++++|+..-++ -.+++++.+++. ..+||++-.+-
T Consensus 147 ~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~---------------------------~~ipvi~~GGi 199 (234)
T cd04732 147 SLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAA---------------------------TGIPVIASGGV 199 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHh---------------------------cCCCEEEecCC
Confidence 445556666665565 55777643222 226777888752 25899999999
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 039716 967 ALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 967 ~~~~~~~~~~~aG~d~~l~ 985 (1002)
.+.++..++++.|+++++.
T Consensus 200 ~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 200 SSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 9999999999999999764
No 261
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=39.18 E-value=2.2e+02 Score=31.76 Aligned_cols=45 Identities=36% Similarity=0.521 Sum_probs=37.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHcCCCEE------EeCCCChHHHHHHHHhhc
Q 039716 957 RIPIIAMTANALSESAEECFANGMDSF------VSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~aG~d~~------l~KP~~~~~L~~~l~~~l 1001 (1002)
.+|||+..+-.+.++..+++.+|+|.+ +..|.-+.++..-+.+|+
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~ 284 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYL 284 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHH
Confidence 589999999999999999999998753 446877777777777664
No 262
>PLN02823 spermine synthase
Probab=39.18 E-value=1.5e+02 Score=33.94 Aligned_cols=55 Identities=15% Similarity=0.354 Sum_probs=40.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhc-----CCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCC
Q 039716 860 PKILLVEDNKINVMVAKSMMKQL-----GHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPV 915 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~-----g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~ 915 (1002)
.+|-+||=|+...++.+..+... .-++. ...||..-++. ...+||+||+|+.-|.
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~~~yDvIi~D~~dp~ 188 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-RDEKFDVIIGDLADPV 188 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-CCCCccEEEecCCCcc
Confidence 37999999999999999988632 12343 35788887754 3467999999986553
No 263
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=38.97 E-value=1.9e+02 Score=31.85 Aligned_cols=101 Identities=14% Similarity=0.260 Sum_probs=64.6
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEE-----EEcCHHHHHHHHHcCCCcEEEEcCC---CC------CCCH-------
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSID-----VVNNGVEAVHAVQCQNYDLILMDVC---MP------VMDG------- 918 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~-----~a~~G~eAl~~~~~~~~DlIlmDi~---MP------~mdG------- 918 (1002)
-+||=+|-++.-....-..-+++|..+. .-.-...-.+++...+||++++==+ .- .++-
T Consensus 105 GrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyF 184 (283)
T TIGR02855 105 GRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKYF 184 (283)
T ss_pred CcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHHH
Confidence 4899999999988888888888886543 2234556667888999998876211 10 1111
Q ss_pred HHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCC
Q 039716 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987 (1002)
Q Consensus 919 ~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP 987 (1002)
.++.+..|.+++. .-.+ || -|-+=...-+..++|||+ |-+-|
T Consensus 185 VeaVk~aR~y~~~-----------------------~D~L-VI--FAGACQS~yEall~AGAN-FASSP 226 (283)
T TIGR02855 185 VETVREARKYVPS-----------------------LDQL-VI--FAGACQSHFESLIRAGAN-FASSP 226 (283)
T ss_pred HHHHHHHHhcCCC-----------------------cccE-EE--EcchhHHHHHHHHHcCcc-ccCCc
Confidence 3466666665421 1122 33 244456677788899998 66666
No 264
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=38.60 E-value=2.6e+02 Score=30.60 Aligned_cols=99 Identities=9% Similarity=0.073 Sum_probs=68.9
Q ss_pred HHHHHHhcCC--eEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCC
Q 039716 875 AKSMMKQLGH--SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952 (1002)
Q Consensus 875 l~~~L~~~g~--~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1002)
++..|..-.. -+........+.+.+....||.|++|+.=-.+|--++...||.....
T Consensus 10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~--------------------- 68 (256)
T PRK10558 10 FKAALAAKQVQIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGS--------------------- 68 (256)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhc---------------------
Confidence 5666665332 22233444678888888889999999988888888888888874322
Q ss_pred CCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCC-ChHHHHHHHH
Q 039716 953 NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV-TFQKLKECLE 998 (1002)
Q Consensus 953 ~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~-~~~~L~~~l~ 998 (1002)
.-.|+|=+. ..+.....+++++|+++++.-=+ +.++.+.+++
T Consensus 69 ---g~~~lVRvp-~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 69 ---ASAPVVRVP-TNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred ---CCCcEEECC-CCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 224555554 45788889999999999987555 4566666554
No 265
>PLN02591 tryptophan synthase
Probab=38.50 E-value=85 Score=34.31 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=34.0
Q ss_pred CCccEEEEcCCC------CHHHHHHHHHcCCCEEEeCCCChHHHHHHHHh
Q 039716 956 KRIPIIAMTANA------LSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999 (1002)
Q Consensus 956 ~~ipIIalTa~~------~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~ 999 (1002)
..+|+|+||=.. .+....+|.++|+|+.|.-.+.+++.......
T Consensus 77 ~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~ 126 (250)
T PLN02591 77 LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAE 126 (250)
T ss_pred CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Confidence 358999888543 34557889999999999999998877666543
No 266
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=38.46 E-value=2.9e+02 Score=30.49 Aligned_cols=99 Identities=9% Similarity=0.084 Sum_probs=67.5
Q ss_pred HHHHHHhcCC--eEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCC
Q 039716 875 AKSMMKQLGH--SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952 (1002)
Q Consensus 875 l~~~L~~~g~--~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1002)
++..|+.-.. -+........+.+.+....||.|++|+.=-..|--++...||.....
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~--------------------- 67 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPY--------------------- 67 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhc---------------------
Confidence 5566654222 22233444677888888889999999988778888888888865322
Q ss_pred CCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCC-hHHHHHHHH
Q 039716 953 NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVT-FQKLKECLE 998 (1002)
Q Consensus 953 ~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~-~~~L~~~l~ 998 (1002)
.-.|+|=+ ...+.....+++++|+++.+.-=++ .++.+.+++
T Consensus 68 ---g~~~lVRv-p~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~ 110 (267)
T PRK10128 68 ---ASQPVIRP-VEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_pred ---CCCeEEEC-CCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHH
Confidence 22445544 4556788899999999999987665 455555544
No 267
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=38.40 E-value=3.1e+02 Score=27.50 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=61.5
Q ss_pred HHHHHHhccCcEEEEe--cccccEEEeecc---CCCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcce-eEEE
Q 039716 223 FLHFVLQNAPVVMGHQ--DKELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKR-EITF 296 (1002)
Q Consensus 223 ~l~~il~~~p~~i~~~--d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~-e~~~ 296 (1002)
..+.+. ++|.+|..- ..+-.++|.|.. ..+++-++++|.+..-...+...++......+|.+.|..... -+.+
T Consensus 33 ~~~~L~-~ap~ailsh~~~~dP~f~yaN~aaL~l~e~~w~el~~lPsr~sae~~~r~er~~lL~~v~~qG~~~~y~GiRi 111 (148)
T PF08670_consen 33 LAKALW-HAPFAILSHGTKADPIFIYANQAALDLFETTWDELVGLPSRLSAEEPERKERQSLLAQVMQQGYIDNYSGIRI 111 (148)
T ss_pred HHHHHH-cCCCEEEEcCCCCCCEEEehhHHHHHHhcCCHHHHhcCcHhhccChhhHHHHHHHHHHHHHhCCccCCCeEEE
Confidence 334444 488766554 344566777654 345566777777665555555555666677888888864322 2222
Q ss_pred EEeecCceEEE---EEEeeeecCCCCEEEEEEEeech
Q 039716 297 ETELFGSKTFL---IYVEPVFSKSGETIGVNYMGMDV 330 (1002)
Q Consensus 297 ~~~~~~~~~~~---~~~~p~~~~~G~~~gi~~~~~DI 330 (1002)
. ..| +.|. ..+-.+.|.+|...|..+++.+-
T Consensus 112 s--s~G-rrf~ie~a~vW~l~D~~g~~~GqAa~F~~W 145 (148)
T PF08670_consen 112 S--STG-RRFRIERATVWNLIDEDGNYCGQAAMFSNW 145 (148)
T ss_pred c--CCC-CeEEEeceEEEEEEcCCCCEEEEEEEEeee
Confidence 1 112 2232 23446789999999998887653
No 268
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.89 E-value=1.2e+02 Score=33.92 Aligned_cols=69 Identities=25% Similarity=0.241 Sum_probs=46.1
Q ss_pred EEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 039716 887 DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966 (1002)
Q Consensus 887 ~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~ 966 (1002)
..+.|.+||.+++ ...+|+|.+|- |..-+=-++.+.+|.. .+++| +..++.
T Consensus 201 VEv~tleea~eA~-~~GaD~I~LDn-~~~e~l~~av~~~~~~--------------------------~~~i~-leAsGG 251 (288)
T PRK07428 201 VETETLEQVQEAL-EYGADIIMLDN-MPVDLMQQAVQLIRQQ--------------------------NPRVK-IEASGN 251 (288)
T ss_pred EECCCHHHHHHHH-HcCCCEEEECC-CCHHHHHHHHHHHHhc--------------------------CCCeE-EEEECC
Confidence 3568999999888 46789999993 3322222233444421 24565 455667
Q ss_pred CCHHHHHHHHHcCCCEEE
Q 039716 967 ALSESAEECFANGMDSFV 984 (1002)
Q Consensus 967 ~~~~~~~~~~~aG~d~~l 984 (1002)
...+...+..+.|+|..-
T Consensus 252 It~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 252 ITLETIRAVAETGVDYIS 269 (288)
T ss_pred CCHHHHHHHHHcCCCEEE
Confidence 789999999999999764
No 269
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=37.51 E-value=94 Score=31.83 Aligned_cols=69 Identities=26% Similarity=0.259 Sum_probs=47.3
Q ss_pred EEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 039716 887 DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966 (1002)
Q Consensus 887 ~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~ 966 (1002)
..+.+-+|+.+++.. .+|.|.+|-.-| -+=-++.+.++.. .++ ..|..++.
T Consensus 85 VEv~~~ee~~ea~~~-g~d~I~lD~~~~-~~~~~~v~~l~~~--------------------------~~~-v~ie~SGG 135 (169)
T PF01729_consen 85 VEVENLEEAEEALEA-GADIIMLDNMSP-EDLKEAVEELREL--------------------------NPR-VKIEASGG 135 (169)
T ss_dssp EEESSHHHHHHHHHT-T-SEEEEES-CH-HHHHHHHHHHHHH--------------------------TTT-SEEEEESS
T ss_pred EEcCCHHHHHHHHHh-CCCEEEecCcCH-HHHHHHHHHHhhc--------------------------CCc-EEEEEECC
Confidence 457888898888774 599999997655 2223334444432 123 68889999
Q ss_pred CCHHHHHHHHHcCCCEEE
Q 039716 967 ALSESAEECFANGMDSFV 984 (1002)
Q Consensus 967 ~~~~~~~~~~~aG~d~~l 984 (1002)
...+...+..+.|+|.+-
T Consensus 136 I~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 136 ITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp SSTTTHHHHHHTT-SEEE
T ss_pred CCHHHHHHHHhcCCCEEE
Confidence 999999999999998764
No 270
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=37.43 E-value=3.4e+02 Score=30.15 Aligned_cols=101 Identities=18% Similarity=0.285 Sum_probs=64.3
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEE-----cCHHHHHHHHHcCCCcEEEEcCC---C------CCCCH-------
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVV-----NNGVEAVHAVQCQNYDLILMDVC---M------PVMDG------- 918 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a-----~~G~eAl~~~~~~~~DlIlmDi~---M------P~mdG------- 918 (1002)
-+||=+|-++.-....-..-+++|..+.-. .-...-.+++...+||++++==+ . -.++.
T Consensus 106 GkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyF 185 (287)
T PF05582_consen 106 GKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKYF 185 (287)
T ss_pred CeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCchhhhcCCCChhhhhhhhccHHH
Confidence 489999999998888888888888754422 23444556778899998876211 1 11111
Q ss_pred HHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCC
Q 039716 919 LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987 (1002)
Q Consensus 919 ~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP 987 (1002)
.++.+..|.+++. .-.+ ||+ |-+=...-+..++|||+ |-+-|
T Consensus 186 VeaV~~aR~~ep~-----------------------~D~L-VIf--AGACQS~fEall~AGAN-FASSP 227 (287)
T PF05582_consen 186 VEAVKEARKYEPN-----------------------LDDL-VIF--AGACQSHFEALLEAGAN-FASSP 227 (287)
T ss_pred HHHHHHHHhcCCC-----------------------cccE-EEE--cchhHHHHHHHHHcCcc-ccCCc
Confidence 3566777766532 1122 333 34456677788899998 66666
No 271
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=37.24 E-value=2.2e+02 Score=28.98 Aligned_cols=67 Identities=27% Similarity=0.306 Sum_probs=46.8
Q ss_pred cCHHHHHHHHHcCCCcEEEEcCCCC--------CCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEE
Q 039716 890 NNGVEAVHAVQCQNYDLILMDVCMP--------VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII 961 (1002)
Q Consensus 890 ~~G~eAl~~~~~~~~DlIlmDi~MP--------~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipII 961 (1002)
.+..++.++. ...+|.|+++..-| ...|++.++.+++. ..+||+
T Consensus 103 ~t~~~~~~~~-~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~pv~ 154 (196)
T cd00564 103 HSLEEALRAE-ELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---------------------------VEIPVV 154 (196)
T ss_pred CCHHHHHHHh-hcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---------------------------CCCCEE
Confidence 4556665544 34699998864433 23567788888752 348999
Q ss_pred EEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 962 AMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 962 alTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
+..+- ..+...++.++|++.+..
T Consensus 155 a~GGi-~~~~i~~~~~~Ga~~i~~ 177 (196)
T cd00564 155 AIGGI-TPENAAEVLAAGADGVAV 177 (196)
T ss_pred EECCC-CHHHHHHHHHcCCCEEEE
Confidence 88776 468899999999998754
No 272
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=36.77 E-value=3.2e+02 Score=29.79 Aligned_cols=99 Identities=9% Similarity=0.051 Sum_probs=68.3
Q ss_pred HHHHHHhcCC--eEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCC
Q 039716 875 AKSMMKQLGH--SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952 (1002)
Q Consensus 875 l~~~L~~~g~--~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1002)
++..|+.-.. -+........+.+.+....||.|++|+.=-.+|--++...||.....
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~--------------------- 61 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGS--------------------- 61 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhc---------------------
Confidence 4455554322 23333455677888888889999999988888888888888874322
Q ss_pred CCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCC-hHHHHHHHH
Q 039716 953 NHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVT-FQKLKECLE 998 (1002)
Q Consensus 953 ~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~-~~~L~~~l~ 998 (1002)
.-.|+|=+ ...+.....+++++|+++++.-=++ .++.+.+++
T Consensus 62 ---g~~~~VRv-p~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 62 ---ASAPVVRP-PWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred ---CCCcEEEC-CCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHH
Confidence 22445555 4557888899999999999875554 566665554
No 273
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=36.42 E-value=99 Score=35.18 Aligned_cols=65 Identities=17% Similarity=0.144 Sum_probs=45.1
Q ss_pred HHHHHHHHcC-CCcEEEEcCCCCCCCH-HHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHH
Q 039716 893 VEAVHAVQCQ-NYDLILMDVCMPVMDG-LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970 (1002)
Q Consensus 893 ~eAl~~~~~~-~~DlIlmDi~MP~mdG-~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~ 970 (1002)
+++.+++... ..|+|.+|+.-|..+. .++++.||+ ..+.+|||+=.- ...+
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~--------------------------~~p~~~vi~g~V-~t~e 152 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK--------------------------HLPETFVIAGNV-GTPE 152 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh--------------------------hCCCCeEEEEec-CCHH
Confidence 4555555543 4699999999875433 456778875 235678887322 2678
Q ss_pred HHHHHHHcCCCEEE
Q 039716 971 SAEECFANGMDSFV 984 (1002)
Q Consensus 971 ~~~~~~~aG~d~~l 984 (1002)
....+.++|+|...
T Consensus 153 ~a~~l~~aGad~i~ 166 (326)
T PRK05458 153 AVRELENAGADATK 166 (326)
T ss_pred HHHHHHHcCcCEEE
Confidence 88999999999875
No 274
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=36.16 E-value=2e+02 Score=25.05 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=48.2
Q ss_pred hhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHHHHH
Q 039716 377 MSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTA 456 (1002)
Q Consensus 377 iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~~~~ 456 (1002)
+.|=+||=|..|.+++.+-.....+++.++.+..+......|..+ .+.|--+. ....+++.+.+..++..+
T Consensus 2 ~~HRVkNnLq~i~sll~lq~~~~~~~e~~~~L~~~~~RI~aia~v-h~~L~~~~--------~~~~v~l~~yl~~L~~~l 72 (76)
T PF07568_consen 2 LHHRVKNNLQIISSLLRLQARRSEDPEAREALEDAQNRIQAIALV-HEQLYQSE--------DLSEVDLREYLEELCEDL 72 (76)
T ss_pred hHHhHHhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHhcCC--------CCCeecHHHHHHHHHHHH
Confidence 579999999999999998777666777777776666555554433 33332111 124578888888877654
Q ss_pred H
Q 039716 457 A 457 (1002)
Q Consensus 457 ~ 457 (1002)
.
T Consensus 73 ~ 73 (76)
T PF07568_consen 73 R 73 (76)
T ss_pred H
Confidence 4
No 275
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=36.12 E-value=2.6e+02 Score=30.02 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=60.0
Q ss_pred cCHHHHHHHHHcCCCc-EEEEcCC-CC-C-CCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 039716 890 NNGVEAVHAVQCQNYD-LILMDVC-MP-V-MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965 (1002)
Q Consensus 890 ~~G~eAl~~~~~~~~D-lIlmDi~-MP-~-mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa 965 (1002)
.+..+..+.+... ++ ++++|+. +- + ..-+++++.|.+. ..+||++=-+
T Consensus 30 ~dp~~~a~~~~~~-~~~l~ivDldga~~g~~~n~~~i~~i~~~---------------------------~~~pv~~gGG 81 (228)
T PRK04128 30 GDPVEIALRFSEY-VDKIHVVDLDGAFEGKPKNLDVVKNIIRE---------------------------TGLKVQVGGG 81 (228)
T ss_pred CCHHHHHHHHHHh-CCEEEEEECcchhcCCcchHHHHHHHHhh---------------------------CCCCEEEcCC
Confidence 4777888877776 66 7778886 31 2 1347888888752 3588998888
Q ss_pred CCCHHHHHHHHHcCCCEEEe--CCCChHHHHHHHHhh
Q 039716 966 NALSESAEECFANGMDSFVS--KPVTFQKLKECLEQY 1000 (1002)
Q Consensus 966 ~~~~~~~~~~~~aG~d~~l~--KP~~~~~L~~~l~~~ 1000 (1002)
-.+.++..+++.+|++..+. .-++++.++++.++|
T Consensus 82 Irs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~ 118 (228)
T PRK04128 82 LRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEF 118 (228)
T ss_pred CCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHc
Confidence 88899999999999998775 445666666665544
No 276
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.89 E-value=2.3e+02 Score=31.45 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=60.3
Q ss_pred eEEEEecCHHHHHHHHHHHHh---cC--Ce-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCc
Q 039716 861 KILLVEDNKINVMVAKSMMKQ---LG--HS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNW 934 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~---~g--~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~ 934 (1002)
.|||-|.+-... -+...++. .. .. ...+.+-+||.+++. ...|+|++|-..|. +=-++...++...
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~-agaDiI~LDn~~~e-~l~~~v~~l~~~~----- 227 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK-AGADIIMLDNMTPE-EIREVIEALKREG----- 227 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH-cCcCEEEECCCCHH-HHHHHHHHHHhcC-----
Confidence 377766664332 34444432 22 22 345789999999886 46799999966543 2223334444310
Q ss_pred hhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 935 DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
..++ ..+..|+....+...+..+.|+|.+-
T Consensus 228 -------------------~~~~-~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 228 -------------------LRER-VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred -------------------cCCC-EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 0123 46888999999999999999999664
No 277
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=35.68 E-value=46 Score=34.57 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=37.4
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEE
Q 039716 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909 (1002)
Q Consensus 862 ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlm 909 (1002)
|||||-....-.-+..+|++.|++|.++.+..--++.+....||.|++
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iil 49 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVI 49 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEE
Confidence 899998887778888999999999999887643345555667887775
No 278
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.30 E-value=1.7e+02 Score=32.80 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=49.4
Q ss_pred EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 039716 886 IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965 (1002)
Q Consensus 886 v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa 965 (1002)
...+.+-.||.+++. ...|+|++| +|+.-+=-++...+|.. .+++ .|..|+
T Consensus 203 eVEv~tl~ea~eal~-~gaDiI~LD-nm~~e~vk~av~~~~~~--------------------------~~~v-~ieaSG 253 (289)
T PRK07896 203 EVEVDSLEQLDEVLA-EGAELVLLD-NFPVWQTQEAVQRRDAR--------------------------APTV-LLESSG 253 (289)
T ss_pred EEEcCCHHHHHHHHH-cCCCEEEeC-CCCHHHHHHHHHHHhcc--------------------------CCCE-EEEEEC
Confidence 456789999999985 568999999 45422223333433421 1233 688899
Q ss_pred CCCHHHHHHHHHcCCCEEE
Q 039716 966 NALSESAEECFANGMDSFV 984 (1002)
Q Consensus 966 ~~~~~~~~~~~~aG~d~~l 984 (1002)
....+...+..+.|+|.+-
T Consensus 254 GI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 254 GLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred CCCHHHHHHHHhcCCCEEE
Confidence 9999999999999998664
No 279
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=35.08 E-value=2e+02 Score=31.38 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=63.9
Q ss_pred HHHHHhcCCeEEEE--cCHHHHHHHHHcCCCcEEEEcCCCCCCCHH-----HHHHHHhccccCCCchhhhhhhhcccCCC
Q 039716 876 KSMMKQLGHSIDVV--NNGVEAVHAVQCQNYDLILMDVCMPVMDGL-----KATRLIRSFEDTGNWDAAAEAGIEQAMPS 948 (1002)
Q Consensus 876 ~~~L~~~g~~v~~a--~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~-----e~~~~IR~~~~~~~~~~~~~~~~~~~~~~ 948 (1002)
...|-+.||.|... .|..-|-++.... -..+|=+--|.-+|. ..++.|++
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~a~rLed~G--c~aVMPlgsPIGSg~Gl~n~~~l~~i~e--------------------- 186 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPMLAKHLEDIG--CATVMPLGSPIGSGQGLQNLLNLQIIIE--------------------- 186 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHcC--CeEEeeccCcccCCCCCCCHHHHHHHHH---------------------
Confidence 45566789998754 4555555444433 246777777876664 34666664
Q ss_pred CCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe-----CCCChHHHHHHH
Q 039716 949 SGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS-----KPVTFQKLKECL 997 (1002)
Q Consensus 949 ~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~-----KP~~~~~L~~~l 997 (1002)
.+++|||+=.+-...++...+++.|+|+.+. |--++.++...+
T Consensus 187 ------~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~ 234 (267)
T CHL00162 187 ------NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAM 234 (267)
T ss_pred ------cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHH
Confidence 2469999999999999999999999999864 444555554444
No 280
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=34.99 E-value=56 Score=35.59 Aligned_cols=68 Identities=19% Similarity=0.316 Sum_probs=49.1
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcC-----CeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCH-----HHHHHHHhc
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLG-----HSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDG-----LKATRLIRS 927 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g-----~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG-----~e~~~~IR~ 927 (1002)
.+|-+||=++...++.+.++.... -++. ...||..-++......||+|++|+.-|...+ .+..+.+++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~ 179 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKR 179 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHh
Confidence 479999999999999999887532 1333 6789988887766558999999998886554 355555554
No 281
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=34.41 E-value=5.4e+02 Score=26.63 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHHHHHHHHHHhhcce
Q 039716 386 TGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHVLQTAAASLQKILM 465 (1002)
Q Consensus 386 ~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v~~~~~~~~~k~i~ 465 (1002)
.+|...+|+|.+...+ +.+..++.|..|+.....- |.|-|+--|..-- ...++..++-.-+-..+. ...+.
T Consensus 2 GAI~NGLELL~~~~~~-~~~~~~~LI~~Sa~~A~aR----l~F~RlAFGaag~-~~~i~~~e~~~~~~~~~~---~~r~~ 72 (182)
T PF10090_consen 2 GAINNGLELLDDEGDP-EMRPAMELIRESARNASAR----LRFFRLAFGAAGS-GQQIDLGEARSVLRGYFA---GGRIT 72 (182)
T ss_pred cchhhhHHHHcCCCCc-cchHHHHHHHHHHHHHHHH----HHHHHHHcCCCCC-CCCCCHHHHHHHHHHHHh---CCceE
Confidence 4688889999876542 2333788888888777654 4455654444322 356676665332222221 12345
Q ss_pred eccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC-eeEEEE
Q 039716 466 LEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKL 509 (1002)
Q Consensus 466 l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G-~I~I~v 509 (1002)
+........ .++ ..-+++.||+-=|..+.|.| .|.|.+
T Consensus 73 l~W~~~~~~-----~~k-~~vklllnl~l~a~~alprGG~i~V~~ 111 (182)
T PF10090_consen 73 LDWQVERDL-----LPK-PEVKLLLNLLLCAEDALPRGGEITVSI 111 (182)
T ss_pred EEccCcccc-----CCH-HHHHHHHHHHHHHHhhcCCCCEEEEEE
Confidence 555444331 122 23389999999999998875 566653
No 282
>PRK04302 triosephosphate isomerase; Provisional
Probab=34.30 E-value=4.8e+02 Score=27.70 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=26.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 956 KRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 956 ~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.++||++-.+-...++...+++.|+|+++.
T Consensus 172 ~~~pvi~GggI~~~e~~~~~~~~gadGvlV 201 (223)
T PRK04302 172 PDVKVLCGAGISTGEDVKAALELGADGVLL 201 (223)
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCCEEEE
Confidence 358999988888999999999999999875
No 283
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.98 E-value=3.6e+02 Score=29.90 Aligned_cols=69 Identities=14% Similarity=0.305 Sum_probs=47.0
Q ss_pred EEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 039716 887 DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966 (1002)
Q Consensus 887 ~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~ 966 (1002)
..+.+-+||.+++. ..+|+|.+|- | + ++.++++-..... ..+++ +|..++.
T Consensus 187 VEv~tleea~~A~~-~GaDiI~LDn-~---~-~e~l~~~v~~~~~----------------------~~~~~-~ieAsGg 237 (273)
T PRK05848 187 IECESLEEAKNAMN-AGADIVMCDN-M---S-VEEIKEVVAYRNA----------------------NYPHV-LLEASGN 237 (273)
T ss_pred EEeCCHHHHHHHHH-cCCCEEEECC-C---C-HHHHHHHHHHhhc----------------------cCCCe-EEEEECC
Confidence 45789999999886 5689999885 3 2 2333333221110 12344 6778888
Q ss_pred CCHHHHHHHHHcCCCEEE
Q 039716 967 ALSESAEECFANGMDSFV 984 (1002)
Q Consensus 967 ~~~~~~~~~~~aG~d~~l 984 (1002)
...+...++.+.|+|.+.
T Consensus 238 It~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 238 ITLENINAYAKSGVDAIS 255 (273)
T ss_pred CCHHHHHHHHHcCCCEEE
Confidence 899999999999999765
No 284
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=33.78 E-value=3.1e+02 Score=36.87 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=71.1
Q ss_pred CCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCC-CCCH-HHHHHHHhccc
Q 039716 859 KPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMP-VMDG-LKATRLIRSFE 929 (1002)
Q Consensus 859 ~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP-~mdG-~e~~~~IR~~~ 929 (1002)
+.+||+. |-+.+=..++..+|+..||+|.-. ...++-++.++++++|+|-|-..|. -|.. .++++.+|+.
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~diVgLS~Lmt~t~~~m~~vi~~L~~~- 810 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMNRR- 810 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEEcCcccccHHHHHHHHHHHHhc-
Confidence 4578888 777888888999999999998765 3567888889999999999988774 3332 3455666642
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHH-H--HHcCCCEEEe
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEE-C--FANGMDSFVS 985 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~-~--~~aG~d~~l~ 985 (1002)
..++||++=-+-.+.+.... + .-.|+|.|-.
T Consensus 811 -------------------------g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~ 844 (1178)
T TIGR02082 811 -------------------------GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVL 844 (1178)
T ss_pred -------------------------CCCceEEEeccccchhHHHhhhhhhccCCeEEec
Confidence 23588887766655555433 2 1238887754
No 285
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=33.56 E-value=2.4e+02 Score=37.91 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=69.9
Q ss_pred CCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCC-CCCH-HHHHHHHhccc
Q 039716 859 KPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMP-VMDG-LKATRLIRSFE 929 (1002)
Q Consensus 859 ~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP-~mdG-~e~~~~IR~~~ 929 (1002)
+.+||++ |-+.+=..++..+|+..||+|.-. -...+-++.+.++++|+|.+-..|+ -|.. .++++.++..
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~~diVgLS~L~t~s~~~m~~~i~~L~~~- 829 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEENADIIGLSGLITPSLDEMVHVAKEMERQ- 829 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEEcCcchhhHHHHHHHHHHHHhc-
Confidence 4688888 888888889999999999998765 3567888899999999999988774 3322 3455666642
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHH-HHHH--HHcCCCEEEe
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES-AEEC--FANGMDSFVS 985 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~-~~~~--~~aG~d~~l~ 985 (1002)
...+||++--+-.+... ..++ --+|+|.|-.
T Consensus 830 -------------------------g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~ 863 (1229)
T PRK09490 830 -------------------------GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVT 863 (1229)
T ss_pred -------------------------CCCCeEEEEeeccchhhhhhhhhhcccCCcEEec
Confidence 23678777665555433 1111 1138887754
No 286
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=33.30 E-value=50 Score=40.47 Aligned_cols=26 Identities=27% Similarity=0.301 Sum_probs=21.1
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCC
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQV 618 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~ 618 (1002)
.|+|.|+|.||++...+-+-.++++.
T Consensus 51 ~IEV~DNG~GI~~~n~~~l~lkh~TS 76 (672)
T KOG1978|consen 51 SIEVSDNGSGISATDFEGLALKHTTS 76 (672)
T ss_pred eEEEecCCCCCCccchhhhhhhhhhh
Confidence 37899999999999988877666543
No 287
>PLN03237 DNA topoisomerase 2; Provisional
Probab=33.25 E-value=69 Score=43.18 Aligned_cols=50 Identities=22% Similarity=0.476 Sum_probs=29.2
Q ss_pred EEEEecCCCCCcCcHh--------hhhhhccCCC---ccccCcCCC-ccccHHHHHHHHHHh
Q 039716 594 CDVYDTGIGIPENALP--------TLFRKYMQVS---ADHARKYGG-TGLGLAICKQLVELM 643 (1002)
Q Consensus 594 i~V~DtGiGI~~e~l~--------~IF~pF~q~~---~~~~~~~~G-tGLGLaI~k~Lve~~ 643 (1002)
|+|.|+|.|||-+.-+ -||.-..... ....+..|| .|.|.+.|.-+-+.+
T Consensus 113 IsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yKvSGGlhGVGasvvNaLS~~f 174 (1465)
T PLN03237 113 ISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKKTTGGRNGYGAKLTNIFSTEF 174 (1465)
T ss_pred EEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcceeeccccccCccccccccCee
Confidence 7899999999976443 1333322221 111112233 599999888776554
No 288
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.21 E-value=3.7e+02 Score=29.94 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=48.4
Q ss_pred EEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 039716 887 DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966 (1002)
Q Consensus 887 ~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~ 966 (1002)
..+.|-+||.+++. ..+|+|++|-.-| -+=-++...++. ..+|..|+.
T Consensus 198 VEv~slee~~ea~~-~gaDiImLDn~s~-e~l~~av~~~~~------------------------------~~~leaSGg 245 (281)
T PRK06543 198 VEVDRLDQIEPVLA-AGVDTIMLDNFSL-DDLREGVELVDG------------------------------RAIVEASGN 245 (281)
T ss_pred EEeCCHHHHHHHHh-cCCCEEEECCCCH-HHHHHHHHHhCC------------------------------CeEEEEECC
Confidence 56899999999885 5789999995433 333344444431 127889999
Q ss_pred CCHHHHHHHHHcCCCEEE
Q 039716 967 ALSESAEECFANGMDSFV 984 (1002)
Q Consensus 967 ~~~~~~~~~~~aG~d~~l 984 (1002)
...+...+....|+|-.-
T Consensus 246 I~~~ni~~yA~tGVD~Is 263 (281)
T PRK06543 246 VNLNTVGAIASTGVDVIS 263 (281)
T ss_pred CCHHHHHHHHhcCCCEEE
Confidence 999999999999998543
No 289
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.82 E-value=3.8e+02 Score=31.62 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=35.6
Q ss_pred CCeEEEEecCHH---HHHHHHHHHHhcCCeEEEEcCHHHHHHHH---Hc-CCCcEEEEcC
Q 039716 859 KPKILLVEDNKI---NVMVAKSMMKQLGHSIDVVNNGVEAVHAV---QC-QNYDLILMDV 911 (1002)
Q Consensus 859 ~~~ILiVeDn~~---n~~~l~~~L~~~g~~v~~a~~G~eAl~~~---~~-~~~DlIlmDi 911 (1002)
+.+|++++-|+. -...++.+-+..|+.+..+.+..+..+.+ .. ..+|+||+|.
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 457888887764 33445555566788888777765544444 33 3699999996
No 290
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=32.17 E-value=1.2e+02 Score=36.50 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=62.5
Q ss_pred HHhccCcEEEEecccccEEEeeccCC---CCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCc
Q 039716 227 VLQNAPVVMGHQDKELRYRFIYNHFP---SLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGS 303 (1002)
Q Consensus 227 il~~~p~~i~~~d~~~~~~~~~~~~~---~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~ 303 (1002)
++++.+.++...|....+.++|.... ....+.++|+...++.+....+.. ..+. ..+........ .
T Consensus 6 ~l~~~~~~~~vi~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~~i~~~~~~~~v-------~~~~---~~~~~~~~~~~-~ 74 (560)
T COG3829 6 ILKSILDGPVVIDKNTGIDVANALALAKRQKNAEAVIGRPLREILETLGMERV-------EQSR---DKELTERLKLK-V 74 (560)
T ss_pred hhhhcccceEEEEcCCceeeechHHHHhhhcceEEEecccceeeccccCccee-------eccC---ccceeeeeecc-c
Confidence 77888888888888888887765432 334566888887777665433221 1111 11222222222 2
Q ss_pred eEEEEEEeeeecCCCCEEEEEEEeechhHHH
Q 039716 304 KTFLIYVEPVFSKSGETIGVNYMGMDVTDQV 334 (1002)
Q Consensus 304 ~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~ 334 (1002)
..+.++..++.+..|.++|+..++.|+++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~ 105 (560)
T COG3829 75 KRIVVVGKTPVDEQGRVVGVLEVFLDISEAL 105 (560)
T ss_pred eeEEEcCCceeecCCceeeeehhhhhhHHHH
Confidence 4455666678888999999999999999844
No 291
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.02 E-value=3.8e+02 Score=31.35 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=60.9
Q ss_pred CCeEEEEecCHH---HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHc----CCCcEEEEcCCCCCCC--HHHHHHHHhccc
Q 039716 859 KPKILLVEDNKI---NVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC----QNYDLILMDVCMPVMD--GLKATRLIRSFE 929 (1002)
Q Consensus 859 ~~~ILiVeDn~~---n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~----~~~DlIlmDi~MP~md--G~e~~~~IR~~~ 929 (1002)
+.+|.+|+-|+. -...++.+-+..|+.+..+.+..+..+.+.. ..+|+||+|. |+.+ --+.+..++.+.
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDT--AGr~~~d~~~l~EL~~l~ 311 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDT--VGRNYLAEESVSEISAYT 311 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEEC--CCCCccCHHHHHHHHHHh
Confidence 357888877764 2445666666778777778787665544432 4699999998 3332 123444454432
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHH----cCCCEEEe
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFA----NGMDSFVS 985 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~----aG~d~~l~ 985 (1002)
.. ..++..++++++.....+...+++ .|.+.+|.
T Consensus 312 ~~----------------------~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~ 349 (407)
T PRK12726 312 DV----------------------VHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFII 349 (407)
T ss_pred hc----------------------cCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEE
Confidence 11 123344667777777666666543 45666653
No 292
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.80 E-value=4.1e+02 Score=28.85 Aligned_cols=79 Identities=25% Similarity=0.315 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCc-EEEEcCC----CCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 039716 893 VEAVHAVQCQNYD-LILMDVC----MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967 (1002)
Q Consensus 893 ~eAl~~~~~~~~D-lIlmDi~----MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~ 967 (1002)
.+.++.+....++ +++.|+. +.+-| +++++.+++. ..+|||+--+-.
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d-~~~i~~~~~~---------------------------~~ipvia~GGv~ 207 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNGYD-LELTRAVSDA---------------------------VNVPVIASGGAG 207 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCCcC-HHHHHHHHhh---------------------------CCCCEEEECCCC
Confidence 4444555555555 5565543 22222 6777777742 358999999999
Q ss_pred CHHHHHHHHHc-CCCEEEe------CCCChHHHHHHHHh
Q 039716 968 LSESAEECFAN-GMDSFVS------KPVTFQKLKECLEQ 999 (1002)
Q Consensus 968 ~~~~~~~~~~a-G~d~~l~------KP~~~~~L~~~l~~ 999 (1002)
+.++..++++. |+++.+. .=+++.+++..+++
T Consensus 208 s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 208 NLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred CHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence 99999999975 9998876 55777887777653
No 293
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=31.47 E-value=3.7e+02 Score=30.30 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=58.5
Q ss_pred HHHHHHhcCCeE-EEEcCHHHHHHHHHcCCCcEEEEcCC---C--CCCCHHHHHHHHhccccCCCchhhhhhhhcccCCC
Q 039716 875 AKSMMKQLGHSI-DVVNNGVEAVHAVQCQNYDLILMDVC---M--PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948 (1002)
Q Consensus 875 l~~~L~~~g~~v-~~a~~G~eAl~~~~~~~~DlIlmDi~---M--P~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~ 948 (1002)
+-..++..|..| ..+.+.++|..+.+ ...|.|+..-. . ....-+.++++++..
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~-~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~-------------------- 159 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK-AGADAVIAEGMESGGHIGELTTMALVPQVVDA-------------------- 159 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH-cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH--------------------
Confidence 445667778764 34678888765554 46888887332 1 122347778888742
Q ss_pred CCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 949 SGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 949 ~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
-++|||+--+-.+.++...++..|+|.+..
T Consensus 160 -------~~iPviaaGGI~~~~~~~~al~~GA~gV~i 189 (307)
T TIGR03151 160 -------VSIPVIAAGGIADGRGMAAAFALGAEAVQM 189 (307)
T ss_pred -------hCCCEEEECCCCCHHHHHHHHHcCCCEeec
Confidence 248999999999999999999999998763
No 294
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=31.09 E-value=3.1e+02 Score=27.53 Aligned_cols=60 Identities=20% Similarity=0.117 Sum_probs=42.6
Q ss_pred HHcCCCcEEEEcCCCCCCCHH-------HHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHH
Q 039716 899 VQCQNYDLILMDVCMPVMDGL-------KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971 (1002)
Q Consensus 899 ~~~~~~DlIlmDi~MP~mdG~-------e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~ 971 (1002)
+.....|.|.++...+...+. .....++. ...+||++..+-...++
T Consensus 132 ~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~pi~~~GGi~~~~~ 184 (200)
T cd04722 132 AEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR---------------------------GSKVPVIAGGGINDPED 184 (200)
T ss_pred HHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh---------------------------cCCCCEEEECCCCCHHH
Confidence 455568999998877754432 22333332 24589999888888799
Q ss_pred HHHHHHcCCCEEEe
Q 039716 972 AEECFANGMDSFVS 985 (1002)
Q Consensus 972 ~~~~~~aG~d~~l~ 985 (1002)
..++++.|+|.+..
T Consensus 185 ~~~~~~~Gad~v~v 198 (200)
T cd04722 185 AAEALALGADGVIV 198 (200)
T ss_pred HHHHHHhCCCEEEe
Confidence 99999999998763
No 295
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=31.03 E-value=5.6e+02 Score=28.32 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=55.4
Q ss_pred CeEEEEecCHH---HHHHHHHHHHhcCCeEEEEcCHH---HHHHHHHc-CCCcEEEEcCCCCCCC--HHHHHHHHhcccc
Q 039716 860 PKILLVEDNKI---NVMVAKSMMKQLGHSIDVVNNGV---EAVHAVQC-QNYDLILMDVCMPVMD--GLKATRLIRSFED 930 (1002)
Q Consensus 860 ~~ILiVeDn~~---n~~~l~~~L~~~g~~v~~a~~G~---eAl~~~~~-~~~DlIlmDi~MP~md--G~e~~~~IR~~~~ 930 (1002)
.++.+++-+.. ....++...+..|+.+..+.+.. ++++.+.. ..+|+||+|. |+.+ .-+.++.+++...
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt--~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT--AGKNYRASETVEEMIETMG 181 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEEC--CCCCcCCHHHHHHHHHHHh
Confidence 45666655443 33345566666788888777653 34444443 4799999997 4333 2334444543321
Q ss_pred CCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHH----HcCCCEEE
Q 039716 931 TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF----ANGMDSFV 984 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~----~aG~d~~l 984 (1002)
. ..+.-.+++++|.....+....+ ..+.+.+|
T Consensus 182 ~----------------------~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I 217 (270)
T PRK06731 182 Q----------------------VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIV 217 (270)
T ss_pred h----------------------hCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEE
Confidence 1 11223467788776665544332 34666655
No 296
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=30.58 E-value=3.7e+02 Score=30.52 Aligned_cols=91 Identities=14% Similarity=0.204 Sum_probs=57.5
Q ss_pred EecCHHHHHHHHHHHHhcCCeE--EEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCH-----HHHHHHHhccccCCCchhh
Q 039716 865 VEDNKINVMVAKSMMKQLGHSI--DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDG-----LKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 865 VeDn~~n~~~l~~~L~~~g~~v--~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG-----~e~~~~IR~~~~~~~~~~~ 937 (1002)
..|.....+..+.+. +.|+.| .++.|...|-.+..- .+ +.+|=+--|.-.| -+.++.++..
T Consensus 180 lpd~~~~v~aa~~L~-~~Gf~v~~yc~~d~~~a~~l~~~-g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~--------- 247 (326)
T PRK11840 180 YPDMVETLKATEILV-KEGFQVMVYCSDDPIAAKRLEDA-GA-VAVMPLGAPIGSGLGIQNPYTIRLIVEG--------- 247 (326)
T ss_pred ccCHHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHhc-CC-EEEeeccccccCCCCCCCHHHHHHHHHc---------
Confidence 334444444444443 459987 345666666555443 34 5555433333333 3455666541
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
+.+|||+=.+-...++...+++.|+|+.|.
T Consensus 248 ------------------~~vpVivdAGIg~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 248 ------------------ATVPVLVDAGVGTASDAAVAMELGCDGVLM 277 (326)
T ss_pred ------------------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 459999999999999999999999999874
No 297
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=30.13 E-value=3.4e+02 Score=30.04 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=35.2
Q ss_pred CCeEEEEecCHH---HHHHHHHHHHhcCCeEEEEcCH-------HHHHHHHHcCCCcEEEEcC
Q 039716 859 KPKILLVEDNKI---NVMVAKSMMKQLGHSIDVVNNG-------VEAVHAVQCQNYDLILMDV 911 (1002)
Q Consensus 859 ~~~ILiVeDn~~---n~~~l~~~L~~~g~~v~~a~~G-------~eAl~~~~~~~~DlIlmDi 911 (1002)
+.+|+||+-|.. .+..++...+..|..+.....+ .+++.......||+||+|.
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT 162 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDT 162 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 468999997753 3455666677778665544322 2444555567899999997
No 298
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=30.12 E-value=57 Score=35.41 Aligned_cols=29 Identities=38% Similarity=0.608 Sum_probs=22.3
Q ss_pred CccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 628 GTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 628 GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
.+||||+||++|++- .+.--.|++.|-++
T Consensus 12 nSglGl~i~~RLl~~----------~De~~~ltl~ltcR 40 (341)
T KOG1478|consen 12 NSGLGLAICKRLLAE----------DDENVRLTLCLTCR 40 (341)
T ss_pred CCcccHHHHHHHHhc----------cCCceeEEEEEEeC
Confidence 579999999999986 33445677877664
No 299
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=30.08 E-value=1.5e+02 Score=35.85 Aligned_cols=65 Identities=23% Similarity=0.282 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCCcEEEEcCC-CCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHH
Q 039716 893 VEAVHAVQCQNYDLILMDVC-MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971 (1002)
Q Consensus 893 ~eAl~~~~~~~~DlIlmDi~-MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~ 971 (1002)
.++++.+.....|+|.+|.. -...+=++.++.||. ..+.+|||+ -.-...+.
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~--------------------------~~p~~~vi~-g~v~t~e~ 282 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA--------------------------KYPDVQIIA-GNVATAEA 282 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh--------------------------hCCCCCEEE-eccCCHHH
Confidence 57777777788999999974 333445667777875 235688887 44556788
Q ss_pred HHHHHHcCCCEEE
Q 039716 972 AEECFANGMDSFV 984 (1002)
Q Consensus 972 ~~~~~~aG~d~~l 984 (1002)
...+.++|+|.+.
T Consensus 283 a~~l~~aGad~i~ 295 (486)
T PRK05567 283 ARALIEAGADAVK 295 (486)
T ss_pred HHHHHHcCCCEEE
Confidence 8899999999874
No 300
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=29.88 E-value=63 Score=33.55 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=37.8
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEc
Q 039716 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMD 910 (1002)
Q Consensus 862 ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmD 910 (1002)
|||||.....-.-+..+|.+.|+.+.++.+....++.+....||.|++-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVIS 50 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEc
Confidence 8999988877777889999999999988775433455555678888764
No 301
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=29.61 E-value=4.5e+02 Score=29.14 Aligned_cols=45 Identities=33% Similarity=0.516 Sum_probs=36.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHcCCCEE------EeCCCChHHHHHHHHhhc
Q 039716 957 RIPIIAMTANALSESAEECFANGMDSF------VSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~aG~d~~------l~KP~~~~~L~~~l~~~l 1001 (1002)
++|||+..+-.+.++..+++.+|+|.+ +.-|.-+.++..-+.+|+
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~ 281 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYL 281 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHH
Confidence 589999999999999999999999864 346777777777777664
No 302
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=29.56 E-value=50 Score=41.11 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=27.5
Q ss_pred EEEEEecCCCCCcCcHh--------hhhhhccCC---CccccCcCCC-ccccHHHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALP--------TLFRKYMQV---SADHARKYGG-TGLGLAICKQLVEL 642 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~--------~IF~pF~q~---~~~~~~~~~G-tGLGLaI~k~Lve~ 642 (1002)
.|+|.|+|.|||-+.-+ -+|.-.... +...-+..+| .|.|++.|.-+-+.
T Consensus 67 sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~svvNAlS~~ 128 (637)
T TIGR01058 67 SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGASVVNALSSW 128 (637)
T ss_pred eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcccccCCcccccccccceeece
Confidence 37899999999975432 122211110 1111111223 69999988777663
No 303
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=29.22 E-value=3.6e+02 Score=29.86 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=58.7
Q ss_pred EEEEecCHHHHHH-HHHHHH----hcCCeE---EEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCC
Q 039716 862 ILLVEDNKINVMV-AKSMMK----QLGHSI---DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGN 933 (1002)
Q Consensus 862 ILiVeDn~~n~~~-l~~~L~----~~g~~v---~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~ 933 (1002)
-+++=||.+..-- +...++ ..+|.. ..+.+-+|+.+++. ..+|+|++|-.-| -.=-++.+.+..
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~-agaDiImLDNm~~-e~~~~av~~l~~------ 231 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE-AGADIIMLDNMSP-EELKEAVKLLGL------ 231 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH-cCCCEEEecCCCH-HHHHHHHHHhcc------
Confidence 3455555554332 444443 346533 34788898888876 4699999995444 222333333311
Q ss_pred chhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 934 WDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
..-.++-.|++...+........|+|-+-
T Consensus 232 ----------------------~~~~~lEaSGgIt~~ni~~yA~tGVD~IS 260 (280)
T COG0157 232 ----------------------AGRALLEASGGITLENIREYAETGVDVIS 260 (280)
T ss_pred ----------------------CCceEEEEeCCCCHHHHHHHhhcCCCEEE
Confidence 11348889999999999999999998553
No 304
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=29.13 E-value=1.7e+02 Score=28.89 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=45.0
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEc----CHHHHHHHHHcCCCcEEEEcCCCCC
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVN----NGVEAVHAVQCQNYDLILMDVCMPV 915 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~----~G~eAl~~~~~~~~DlIlmDi~MP~ 915 (1002)
..+.+|+|+.......+-+..+|.+.|..|..++ |.++++. .-|+|+.-..-|.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~-----~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH-----DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh-----hCCEEEEecCCCC
Confidence 4567999999999999999999999999999998 6665543 4699998887663
No 305
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=29.01 E-value=2.2e+02 Score=31.72 Aligned_cols=70 Identities=11% Similarity=0.197 Sum_probs=50.3
Q ss_pred EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 039716 886 IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965 (1002)
Q Consensus 886 v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa 965 (1002)
...+.+-+||.+++.. .+|+|++| +|+.-+=-++.+.+++. .++ .++..|+
T Consensus 193 eVEv~tleqa~ea~~a-gaDiI~LD-n~~~e~l~~av~~~~~~--------------------------~~~-~~leaSG 243 (284)
T PRK06096 193 VVEADTPKEAIAALRA-QPDVLQLD-KFSPQQATEIAQIAPSL--------------------------APH-CTLSLAG 243 (284)
T ss_pred EEECCCHHHHHHHHHc-CCCEEEEC-CCCHHHHHHHHHHhhcc--------------------------CCC-eEEEEEC
Confidence 3456899999998864 58999999 55443444455544421 122 3788999
Q ss_pred CCCHHHHHHHHHcCCCEEE
Q 039716 966 NALSESAEECFANGMDSFV 984 (1002)
Q Consensus 966 ~~~~~~~~~~~~aG~d~~l 984 (1002)
....+...+....|+|-+.
T Consensus 244 GI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 244 GINLNTLKNYADCGIRLFI 262 (284)
T ss_pred CCCHHHHHHHHhcCCCEEE
Confidence 9999999999999998754
No 306
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=28.66 E-value=2.6e+02 Score=34.90 Aligned_cols=93 Identities=11% Similarity=0.223 Sum_probs=56.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEc-CHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVN-NGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~-~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
+..+.++|.|+...+.+ ++.|+.+...+ .-.+.++...-.+.|++++-..=+..+ ..++..+|+.
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n-~~i~~~ar~~--------- 488 (621)
T PRK03562 423 GVKMTVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS-LQLVELVKEH--------- 488 (621)
T ss_pred CCCEEEEECCHHHHHHH----HhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH-HHHHHHHHHh---------
Confidence 34567777777654433 33566665543 223444555555677777655433332 4566666752
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
+++++|++-+.+ .+...+..++|+|..+
T Consensus 489 -----------------~p~~~iiaRa~d--~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 489 -----------------FPHLQIIARARD--VDHYIRLRQAGVEKPE 516 (621)
T ss_pred -----------------CCCCeEEEEECC--HHHHHHHHHCCCCEEe
Confidence 467888886644 5677788899999764
No 307
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=28.63 E-value=4.2e+02 Score=27.42 Aligned_cols=86 Identities=22% Similarity=0.231 Sum_probs=49.2
Q ss_pred HHHHHhcCCeEEEEc---CHHHHHHHHHcCCCcEEEEcCCCCCCCH-------HHHHHHHhccccCCCchhhhhhhhccc
Q 039716 876 KSMMKQLGHSIDVVN---NGVEAVHAVQCQNYDLILMDVCMPVMDG-------LKATRLIRSFEDTGNWDAAAEAGIEQA 945 (1002)
Q Consensus 876 ~~~L~~~g~~v~~a~---~G~eAl~~~~~~~~DlIlmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~~~~~~~~ 945 (1002)
...+++.|..+.... +..+.+..+... .|.|+++...|+-+| ++..+.+|+.-..
T Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~-------------- 162 (211)
T cd00429 98 IQLIKELGMKAGVALNPGTPVEVLEPYLDE-VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPE-------------- 162 (211)
T ss_pred HHHHHHCCCeEEEEecCCCCHHHHHHHHhh-CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHh--------------
Confidence 344445565533322 235555555433 788877765566544 3344555542110
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 946 MPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 946 ~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
..+++||++.- .-..+...++.++|+|.++.
T Consensus 163 --------~~~~~pi~v~G-GI~~env~~~~~~gad~iiv 193 (211)
T cd00429 163 --------NNLNLLIEVDG-GINLETIPLLAEAGADVLVA 193 (211)
T ss_pred --------cCCCeEEEEEC-CCCHHHHHHHHHcCCCEEEE
Confidence 12346776544 55578899999999998875
No 308
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=28.55 E-value=2.6e+02 Score=30.17 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=53.3
Q ss_pred HHHHHHhcCCeEEEE--cCHHHHHHHHHcCCCcEEEEcCCCCCCCHH-----HHHHHHhccccCCCchhhhhhhhcccCC
Q 039716 875 AKSMMKQLGHSIDVV--NNGVEAVHAVQCQNYDLILMDVCMPVMDGL-----KATRLIRSFEDTGNWDAAAEAGIEQAMP 947 (1002)
Q Consensus 875 l~~~L~~~g~~v~~a--~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~-----e~~~~IR~~~~~~~~~~~~~~~~~~~~~ 947 (1002)
....|-+.||.|... .|..-|-++..... -.+|=+--|.-+|. ..++.|+..
T Consensus 115 Aae~Lv~eGF~VlPY~~~D~v~akrL~d~Gc--aavMPlgsPIGSg~Gi~n~~~l~~i~~~------------------- 173 (247)
T PF05690_consen 115 AAEILVKEGFVVLPYCTDDPVLAKRLEDAGC--AAVMPLGSPIGSGRGIQNPYNLRIIIER------------------- 173 (247)
T ss_dssp HHHHHHHTT-EEEEEE-S-HHHHHHHHHTT---SEBEEBSSSTTT---SSTHHHHHHHHHH-------------------
T ss_pred HHHHHHHCCCEEeecCCCCHHHHHHHHHCCC--CEEEecccccccCcCCCCHHHHHHHHHh-------------------
Confidence 456677889998754 45555555544332 25777788887774 456777652
Q ss_pred CCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 948 SSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 948 ~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.++|||+=.+-..+.+...+++.|+|+.|.
T Consensus 174 --------~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 174 --------ADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp --------GSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred --------cCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 259999999999999999999999999985
No 309
>PLN02335 anthranilate synthase
Probab=28.55 E-value=94 Score=33.27 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=34.9
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEE
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlm 909 (1002)
+...+|||||-..-.-..+...|++.|+.+.++.+..-.++.+....||.|++
T Consensus 16 ~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVi 68 (222)
T PLN02335 16 KQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLI 68 (222)
T ss_pred CccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEE
Confidence 34568999974333445577888889999888765321234444557887765
No 310
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=28.41 E-value=5.6e+02 Score=27.89 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=67.6
Q ss_pred HHHHHHhcC--CeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCC
Q 039716 875 AKSMMKQLG--HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSS 952 (1002)
Q Consensus 875 l~~~L~~~g--~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1002)
++..|+.-. +-+.....-...++++....||.|++|+.=-.+|--++...|+.....
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~--------------------- 61 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPY--------------------- 61 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhc---------------------
Confidence 445555422 223334455677888888889999999987778888888888864321
Q ss_pred CCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe-CCCChHHHHHHHHh
Q 039716 953 NHFKRIPIIAMTANALSESAEECFANGMDSFVS-KPVTFQKLKECLEQ 999 (1002)
Q Consensus 953 ~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~-KP~~~~~L~~~l~~ 999 (1002)
.-.|+|=+.+. +.....+++++|+++.+. |-=+.++.+..++.
T Consensus 62 ---g~~~~VRv~~~-~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~ 105 (249)
T TIGR02311 62 ---PSSPVVRPAIG-DPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAA 105 (249)
T ss_pred ---CCCcEEECCCC-CHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHH
Confidence 12455555444 567889999999998765 55567777776653
No 311
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.25 E-value=7.5e+02 Score=26.30 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=57.3
Q ss_pred HHHHHhcCC-eEEEEcCHHHHHHHHH---cCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCC
Q 039716 876 KSMMKQLGH-SIDVVNNGVEAVHAVQ---CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951 (1002)
Q Consensus 876 ~~~L~~~g~-~v~~a~~G~eAl~~~~---~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1002)
...|.+.+. -|....+..+|++.++ ...+++|=+=+.-| +|+++++.+|+.
T Consensus 9 ~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~--~~~~~I~~l~~~----------------------- 63 (212)
T PRK05718 9 EEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTP--AALEAIRLIAKE----------------------- 63 (212)
T ss_pred HHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCc--cHHHHHHHHHHH-----------------------
Confidence 345555553 4666678888887654 45577554434444 799999999852
Q ss_pred CCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Q 039716 952 SNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLE 998 (1002)
Q Consensus 952 ~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~ 998 (1002)
++++ +|..-.-.+.+..+.++++|++-.++-=++.+-++.+.+
T Consensus 64 ---~p~~-~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~vi~~a~~ 106 (212)
T PRK05718 64 ---VPEA-LIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPLLKAAQE 106 (212)
T ss_pred ---CCCC-EEEEeeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHH
Confidence 2333 333333445688889999999855544455544444443
No 312
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=27.90 E-value=4e+02 Score=32.24 Aligned_cols=60 Identities=15% Similarity=0.286 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcC-CeEEEEc------CHHHHHHHHHcCCCcEEEEcCCCCCC-CHHHHHHHHhc
Q 039716 868 NKINVMVAKSMMKQLG-HSIDVVN------NGVEAVHAVQCQNYDLILMDVCMPVM-DGLKATRLIRS 927 (1002)
Q Consensus 868 n~~n~~~l~~~L~~~g-~~v~~a~------~G~eAl~~~~~~~~DlIlmDi~MP~m-dG~e~~~~IR~ 927 (1002)
-|.-...+..+|++.| |+|...+ +..+..+.+...+||+|.+-..-|.. ...++++.+|+
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgis~~t~~~~~a~~~~~~~k~ 88 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLITAITPAIYIACETLKFARE 88 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcCcCEEEEecCcccHHHHHHHHHHHHH
Confidence 4667788999999999 6887763 23444566778899999997765543 23466677775
No 313
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=27.55 E-value=2.5e+02 Score=31.07 Aligned_cols=70 Identities=23% Similarity=0.181 Sum_probs=47.5
Q ss_pred EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 039716 886 IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965 (1002)
Q Consensus 886 v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa 965 (1002)
-..+.+-.||.+++ ....|.|.+|-.-|. +=-++.+.+|. ..+++||++.-
T Consensus 187 gVev~t~eea~~A~-~~gaD~I~ld~~~p~-~l~~~~~~~~~--------------------------~~~~i~i~AsG- 237 (272)
T cd01573 187 VVEVDSLEEALAAA-EAGADILQLDKFSPE-ELAELVPKLRS--------------------------LAPPVLLAAAG- 237 (272)
T ss_pred EEEcCCHHHHHHHH-HcCCCEEEECCCCHH-HHHHHHHHHhc--------------------------cCCCceEEEEC-
Confidence 34578889988876 467899999965552 11123333442 12467877655
Q ss_pred CCCHHHHHHHHHcCCCEEE
Q 039716 966 NALSESAEECFANGMDSFV 984 (1002)
Q Consensus 966 ~~~~~~~~~~~~aG~d~~l 984 (1002)
....+...+..++|+|.+.
T Consensus 238 GI~~~ni~~~~~~Gvd~I~ 256 (272)
T cd01573 238 GINIENAAAYAAAGADILV 256 (272)
T ss_pred CCCHHHHHHHHHcCCcEEE
Confidence 5678899999999999874
No 314
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=27.37 E-value=2.9e+02 Score=29.47 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=49.4
Q ss_pred CHHHHHHHHHcCCCcEEEEcCCCCCC-CH--HHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 039716 891 NGVEAVHAVQCQNYDLILMDVCMPVM-DG--LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967 (1002)
Q Consensus 891 ~G~eAl~~~~~~~~DlIlmDi~MP~m-dG--~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~ 967 (1002)
+..+..+.+.....-+|++|+.--++ .| +++++.+++. ..+|||+--+-.
T Consensus 142 ~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i~~~---------------------------~~~pvia~GGi~ 194 (221)
T TIGR00734 142 SLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKTLEL---------------------------SEHPVMLGGGIS 194 (221)
T ss_pred cHHHHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHHHhh---------------------------CCCCEEEeCCCC
Confidence 44444444443334689999975433 33 6788888752 358999999999
Q ss_pred CHHHHHHHHHcCCCEEEe
Q 039716 968 LSESAEECFANGMDSFVS 985 (1002)
Q Consensus 968 ~~~~~~~~~~aG~d~~l~ 985 (1002)
+.++..++...|++..+.
T Consensus 195 s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 195 GVEDLELLKEMGVSAVLV 212 (221)
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999998875
No 315
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=27.27 E-value=3.6e+02 Score=33.04 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=20.4
Q ss_pred CCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 956 KRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 956 ~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
+.++||+-+.+ ++......++|+|..+.
T Consensus 507 ~~~~iiar~~~--~~~~~~l~~~Gad~vv~ 534 (558)
T PRK10669 507 PDIEIIARAHY--DDEVAYITERGANQVVM 534 (558)
T ss_pred CCCeEEEEECC--HHHHHHHHHcCCCEEEC
Confidence 56788887653 56666778899997663
No 316
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=27.08 E-value=2e+02 Score=34.88 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHcCCCcEEEEcCCCCCCCH--HHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 039716 890 NNGVEAVHAVQCQNYDLILMDVCMPVMDG--LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967 (1002)
Q Consensus 890 ~~G~eAl~~~~~~~~DlIlmDi~MP~mdG--~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~ 967 (1002)
.+..|-++.+-....|+|.+|+. .+-+- ++.+++||+. ++.++||+ ..-.
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~-~g~~~~~~~~i~~ik~~--------------------------~p~~~vi~-g~v~ 298 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSS-QGDSIYQLEMIKYIKKT--------------------------YPELDVIG-GNVV 298 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCC-CCCcHHHHHHHHHHHHh--------------------------CCCCcEEE-ecCC
Confidence 35556666777788999999993 12222 2788888862 34566664 2235
Q ss_pred CHHHHHHHHHcCCCEEEe
Q 039716 968 LSESAEECFANGMDSFVS 985 (1002)
Q Consensus 968 ~~~~~~~~~~aG~d~~l~ 985 (1002)
..+....|.++|+|....
T Consensus 299 t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 299 TMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred CHHHHHHHHHcCcCEEEE
Confidence 578889999999998754
No 317
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=27.07 E-value=1.7e+02 Score=30.51 Aligned_cols=53 Identities=25% Similarity=0.494 Sum_probs=40.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCC--eEEE-EcCHHHHHHHHHcC-CCcEEEEcC
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGH--SIDV-VNNGVEAVHAVQCQ-NYDLILMDV 911 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~--~v~~-a~~G~eAl~~~~~~-~~DlIlmDi 911 (1002)
..++++||-|.....+++.-++.+|+ .+.+ ..|...++..+... .||+|++|-
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 34799999999999999999998883 3333 34555666666555 499999996
No 318
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.96 E-value=2.4e+02 Score=31.45 Aligned_cols=67 Identities=19% Similarity=0.161 Sum_probs=46.9
Q ss_pred EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 039716 886 IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965 (1002)
Q Consensus 886 v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa 965 (1002)
...+.+-+||.+++.. .+|+|++|-.-| -+=-++.+.++ .+.| +..|+
T Consensus 198 eVEv~tleea~ea~~~-gaDiI~LDn~s~-e~l~~av~~~~-----------------------------~~~~-leaSG 245 (281)
T PRK06106 198 EVEVDTLDQLEEALEL-GVDAVLLDNMTP-DTLREAVAIVA-----------------------------GRAI-TEASG 245 (281)
T ss_pred EEEeCCHHHHHHHHHc-CCCEEEeCCCCH-HHHHHHHHHhC-----------------------------CCce-EEEEC
Confidence 3568899999998854 689999995444 12222222222 1233 78999
Q ss_pred CCCHHHHHHHHHcCCCEEE
Q 039716 966 NALSESAEECFANGMDSFV 984 (1002)
Q Consensus 966 ~~~~~~~~~~~~aG~d~~l 984 (1002)
....+...+..+.|+|-+-
T Consensus 246 GI~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 246 RITPETAPAIAASGVDLIS 264 (281)
T ss_pred CCCHHHHHHHHhcCCCEEE
Confidence 9999999999999998654
No 319
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=26.73 E-value=4.8e+02 Score=27.03 Aligned_cols=87 Identities=25% Similarity=0.304 Sum_probs=49.9
Q ss_pred HHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCCCH-------HHHHHHHhccccCCCchhhhhhhhcc
Q 039716 875 AKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVMDG-------LKATRLIRSFEDTGNWDAAAEAGIEQ 944 (1002)
Q Consensus 875 l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~~~~~~~ 944 (1002)
....+++.|..+... .+..+.++.+.. ..|.|+.+-.-|+..| ++.++++|+...
T Consensus 96 ~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~-------------- 160 (210)
T TIGR01163 96 LLQLIKDLGAKAGIVLNPATPLEFLEYVLP-DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMID-------------- 160 (210)
T ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHHHh-hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHH--------------
Confidence 335666667654433 345677766643 3577766554454444 334445553211
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 945 AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 945 ~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
...+++||++-- .-..+...++++.|+|.++.
T Consensus 161 --------~~~~~~~i~v~G-GI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 161 --------ENGLSILIEVDG-GVNDDNARELAEAGADILVA 192 (210)
T ss_pred --------hcCCCceEEEEC-CcCHHHHHHHHHcCCCEEEE
Confidence 012346765544 45678888999999997764
No 320
>PRK10742 putative methyltransferase; Provisional
Probab=26.61 E-value=5.5e+02 Score=28.09 Aligned_cols=58 Identities=10% Similarity=0.235 Sum_probs=43.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhc------CC----eEEE-EcCHHHHHHHHHcCCCcEEEEcCCCCCCC
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQL------GH----SIDV-VNNGVEAVHAVQCQNYDLILMDVCMPVMD 917 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~------g~----~v~~-a~~G~eAl~~~~~~~~DlIlmDi~MP~md 917 (1002)
+.+|..||-++....+++.-|++. +. ++.+ ..|..+.+.... ..||+|++|-+-|...
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~-~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT-PRPQVVYLDPMFPHKQ 178 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC-CCCcEEEECCCCCCCc
Confidence 556999999999999999999985 21 2332 356666666533 3799999999998754
No 321
>PRK13566 anthranilate synthase; Provisional
Probab=26.59 E-value=1.3e+02 Score=38.13 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=40.4
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEE
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlm 909 (1002)
..+.+|||||-...+...+..+|++.|+.|.++..... .+.+....||.||+
T Consensus 524 ~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~~~DgVVL 575 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRVNPDLVVL 575 (720)
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhcCCCEEEE
Confidence 45679999998887888999999999999988876542 23344567998775
No 322
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.55 E-value=1.7e+02 Score=32.31 Aligned_cols=43 Identities=9% Similarity=0.245 Sum_probs=33.1
Q ss_pred CCccEEEEcCCC------CHHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Q 039716 956 KRIPIIAMTANA------LSESAEECFANGMDSFVSKPVTFQKLKECLE 998 (1002)
Q Consensus 956 ~~ipIIalTa~~------~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~ 998 (1002)
..+|+|+||=.. .+....+|.++|+|+++.--..+++....+.
T Consensus 90 ~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~ 138 (263)
T CHL00200 90 IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLIS 138 (263)
T ss_pred CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHH
Confidence 458999888653 3556889999999999998888877665544
No 323
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=26.30 E-value=3.4e+02 Score=28.64 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=29.0
Q ss_pred CccEEEEcCCCCHHHHHHHHHcCCCEEE--eCCCChHHHHHHHHh
Q 039716 957 RIPIIAMTANALSESAEECFANGMDSFV--SKPVTFQKLKECLEQ 999 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~aG~d~~l--~KP~~~~~L~~~l~~ 999 (1002)
.+||++...-........|+++|+|..+ ..-+..+.+...++.
T Consensus 72 ~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~ 116 (217)
T cd00331 72 SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYEL 116 (217)
T ss_pred CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHH
Confidence 4788877655666678889999999887 333333555555543
No 324
>KOG1229 consensus 3'5'-cyclic nucleotide phosphodiesterases [Signal transduction mechanisms]
Probab=26.24 E-value=37 Score=38.96 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=65.3
Q ss_pred HHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCcc-chhhhhHHHHHHHHhCCCcceeEEEEEe
Q 039716 224 LHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGA-GVKESQDFKREVLEKGLPAKREITFETE 299 (1002)
Q Consensus 224 l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~-~~~~~~~~~~~vl~~g~~~~~e~~~~~~ 299 (1002)
+-.+++..--.|-..|.+..+.|+|..| .|+...+++|+...++-... ......+.....+++|..++.+......
T Consensus 159 lFaaLD~c~eAiEI~~ddhViQYVNpAfE~mmG~hkgEliGke~adlpkkdknradlldtintcikkgke~qG~~~aRRk 238 (775)
T KOG1229|consen 159 LFAALDECDEAIEICDDDHVIQYVNPAFENMMGCHKGELIGKEEADLPKKDKNRADLLDTINTCIKKGKEAQGEEEARRK 238 (775)
T ss_pred HHHHHhhhhhhheeccchhHHHHhcHHHHhhhcchhhhhcCCchhhccccccchhhhhhhhhHhhhcCccccchHHHhhc
Confidence 3455666666666677777777877655 56778899999987763221 1222334444556677666555444444
Q ss_pred ecCceEEEEEEeeeecCCCCEEEEEE
Q 039716 300 LFGSKTFLIYVEPVFSKSGETIGVNY 325 (1002)
Q Consensus 300 ~~~~~~~~~~~~p~~~~~G~~~gi~~ 325 (1002)
.+.+..+.+.+.|+....|.+..++.
T Consensus 239 sgdS~dqh~~itP~~gqggkirhfvs 264 (775)
T KOG1229|consen 239 SGDSCDQHFIITPFAGQGGKIRHFVS 264 (775)
T ss_pred cCCcccceEEEeeecCCCCceeeehh
Confidence 45555677778899998888876653
No 325
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=26.18 E-value=3.8e+02 Score=29.94 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=26.3
Q ss_pred CCccEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 956 KRIPIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 956 ~~ipIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
+++|||+..+-.+.++..+++.+|||...
T Consensus 251 ~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 251 PGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred CCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 36999999999999999999999998764
No 326
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=26.07 E-value=1.2e+02 Score=32.20 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=41.7
Q ss_pred eEEEEecC---------HHHHHHHHHHHH-hcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccc
Q 039716 861 KILLVEDN---------KINVMVAKSMMK-QLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFE 929 (1002)
Q Consensus 861 ~ILiVeDn---------~~n~~~l~~~L~-~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~ 929 (1002)
||||+-.+ +.....+..+|+ ..|++|++..+.. .+..-.-..||+|++....+..-.-+..+.|+++-
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~-~~~~~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v 78 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPD-DLTPENLKGYDVVVFYNTGGDELTDEQRAALRDYV 78 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGG-CTSHHCHCT-SEEEEE-SSCCGS-HHHHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcc-cCChhHhcCCCEEEEECCCCCcCCHHHHHHHHHHH
Confidence 57777665 256778899998 7789999887733 22222235899999988875322335556666554
No 327
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=26.06 E-value=3.7e+02 Score=33.45 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=22.0
Q ss_pred CCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 955 FKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 955 ~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.++++||+-+.+ .+......++|+|..+.
T Consensus 489 ~p~~~IiaRa~~--~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 489 FPHLHILARARG--RVEAHELLQAGVTQFSR 517 (601)
T ss_pred CCCCeEEEEeCC--HHHHHHHHhCCCCEEEc
Confidence 467888886654 57777888999998764
No 328
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=25.95 E-value=3.6e+02 Score=29.05 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=58.8
Q ss_pred HHHHHHhcCCeEEEEc--CHHHHHHHHHcCCCcEEEEcCCCCCCCHHH-----HHHHHhccccCCCchhhhhhhhcccCC
Q 039716 875 AKSMMKQLGHSIDVVN--NGVEAVHAVQCQNYDLILMDVCMPVMDGLK-----ATRLIRSFEDTGNWDAAAEAGIEQAMP 947 (1002)
Q Consensus 875 l~~~L~~~g~~v~~a~--~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e-----~~~~IR~~~~~~~~~~~~~~~~~~~~~ 947 (1002)
....|-+.||.|.... |..-|-.+.... -..+|=+.-|.-+|.- .++.|+..
T Consensus 122 Aae~Lv~eGF~VlPY~~dD~v~arrLee~G--caavMPl~aPIGSg~G~~n~~~l~iiie~------------------- 180 (262)
T COG2022 122 AAEQLVKEGFVVLPYTTDDPVLARRLEEAG--CAAVMPLGAPIGSGLGLQNPYNLEIIIEE------------------- 180 (262)
T ss_pred HHHHHHhCCCEEeeccCCCHHHHHHHHhcC--ceEeccccccccCCcCcCCHHHHHHHHHh-------------------
Confidence 4566777899987653 444333333222 3568888888877754 45566641
Q ss_pred CCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 948 SSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 948 ~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.++|||+=.+-..+.+...+++.|+|..|.
T Consensus 181 --------a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 181 --------ADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred --------CCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 369999999999999999999999999985
No 329
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=25.73 E-value=1.7e+02 Score=27.45 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=34.4
Q ss_pred HHHHHHhcCCeEEEEcCH-----HHHHHHHHc-CCCcEEEE--cCCC---CCCCHHHHHHHHh
Q 039716 875 AKSMMKQLGHSIDVVNNG-----VEAVHAVQC-QNYDLILM--DVCM---PVMDGLKATRLIR 926 (1002)
Q Consensus 875 l~~~L~~~g~~v~~a~~G-----~eAl~~~~~-~~~DlIlm--Di~M---P~mdG~e~~~~IR 926 (1002)
...+|++.|..+..+..+ .++.+++++ ..+|+|+- |-.. +.-||+.+.|.-.
T Consensus 34 Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~ 96 (112)
T cd00532 34 TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLAR 96 (112)
T ss_pred HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHH
Confidence 345566677777665432 558889999 99999986 4333 4667886555444
No 330
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=25.61 E-value=5.2e+02 Score=30.66 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=39.6
Q ss_pred CCeEEEEecCHHHH---HHHHHHHHhcCCeEEEEcCH-------HHHHHHHHcCCCcEEEEcCCCCCCCHH--HHHHHHh
Q 039716 859 KPKILLVEDNKINV---MVAKSMMKQLGHSIDVVNNG-------VEAVHAVQCQNYDLILMDVCMPVMDGL--KATRLIR 926 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~---~~l~~~L~~~g~~v~~a~~G-------~eAl~~~~~~~~DlIlmDi~MP~mdG~--e~~~~IR 926 (1002)
+.+|+||+-|+.-. ..++.+-+..|..+..+.++ .++++.++...||+||+|.- +.... ++.+.++
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTa--Gr~~~d~~lm~El~ 205 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTS--GRHKQEDSLFEEML 205 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECC--CCCcchHHHHHHHH
Confidence 45789988776432 22333344455555544432 24666777778999999983 33322 3555555
Q ss_pred cc
Q 039716 927 SF 928 (1002)
Q Consensus 927 ~~ 928 (1002)
..
T Consensus 206 ~i 207 (429)
T TIGR01425 206 QV 207 (429)
T ss_pred HH
Confidence 43
No 331
>PLN02366 spermidine synthase
Probab=25.54 E-value=2.7e+02 Score=31.44 Aligned_cols=56 Identities=27% Similarity=0.443 Sum_probs=41.5
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcC-----CeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCC
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLG-----HSID-VVNNGVEAVHAVQCQNYDLILMDVCMPV 915 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g-----~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~ 915 (1002)
.+|-+||=++....+.+..+...+ -++. ...||.+.++......||+|++|..-|.
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~ 177 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPV 177 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCC
Confidence 478999999988889999886532 2344 3467877776554568999999987664
No 332
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=25.40 E-value=1.5e+02 Score=35.90 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=42.1
Q ss_pred HHHHHHHcCCCcEEEEcCC---CCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHH
Q 039716 894 EAVHAVQCQNYDLILMDVC---MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE 970 (1002)
Q Consensus 894 eAl~~~~~~~~DlIlmDi~---MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~ 970 (1002)
+-+..+.+...|+|.+|.. -+. -++.+++||+. .+.+||++ -.-...+
T Consensus 244 ~~~~~l~~ag~d~i~id~a~G~s~~--~~~~i~~ik~~--------------------------~~~~~v~a-G~V~t~~ 294 (495)
T PTZ00314 244 ERAAALIEAGVDVLVVDSSQGNSIY--QIDMIKKLKSN--------------------------YPHVDIIA-GNVVTAD 294 (495)
T ss_pred HHHHHHHHCCCCEEEEecCCCCchH--HHHHHHHHHhh--------------------------CCCceEEE-CCcCCHH
Confidence 3344455667999999983 222 26788888852 34577777 2334467
Q ss_pred HHHHHHHcCCCEEE
Q 039716 971 SAEECFANGMDSFV 984 (1002)
Q Consensus 971 ~~~~~~~aG~d~~l 984 (1002)
....+.++|+|.+.
T Consensus 295 ~a~~~~~aGad~I~ 308 (495)
T PTZ00314 295 QAKNLIDAGADGLR 308 (495)
T ss_pred HHHHHHHcCCCEEE
Confidence 88899999999774
No 333
>PLN02775 Probable dihydrodipicolinate reductase
Probab=25.40 E-value=3.9e+02 Score=29.89 Aligned_cols=78 Identities=12% Similarity=0.136 Sum_probs=49.8
Q ss_pred eEEEE--cCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEE
Q 039716 885 SIDVV--NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIA 962 (1002)
Q Consensus 885 ~v~~a--~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIa 962 (1002)
.|... .+-.+++...+...||+|++|..-|.. -++.++...+. .--+||.
T Consensus 59 ~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P~a-~~~~~~~~~~~---------------------------g~~~VvG 110 (286)
T PLN02775 59 EVRLVGPSEREAVLSSVKAEYPNLIVVDYTLPDA-VNDNAELYCKN---------------------------GLPFVMG 110 (286)
T ss_pred eeeeecCccHHHHHHHhhccCCCEEEEECCChHH-HHHHHHHHHHC---------------------------CCCEEEE
Confidence 44444 788888888878889999999999963 23333333321 1234666
Q ss_pred EcCCCCHHHHHHHHHcCCCEEEeCCCCh
Q 039716 963 MTANALSESAEECFANGMDSFVSKPVTF 990 (1002)
Q Consensus 963 lTa~~~~~~~~~~~~aG~d~~l~KP~~~ 990 (1002)
.|+....+....|-..+.--++.-.|++
T Consensus 111 TTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 111 TTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred CCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 6776655444444445777777777775
No 334
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=25.37 E-value=4.6e+02 Score=28.76 Aligned_cols=67 Identities=19% Similarity=0.348 Sum_probs=44.9
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcC-----CeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCC-----HHHHHHHHhc
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLG-----HSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMD-----GLKATRLIRS 927 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g-----~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~md-----G~e~~~~IR~ 927 (1002)
.+|.+||-++......+..+...+ -.+. ...||.+.++.. ...||+|++|..-|... ..++.+.+++
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~ 174 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-ENTFDVIIVDSTDPVGPAETLFTKEFYELLKK 174 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-CCCccEEEEeCCCCCCcccchhHHHHHHHHHH
Confidence 369999999999888888886542 1233 246777766544 46899999998655432 2344555554
No 335
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=25.03 E-value=3.5e+02 Score=34.99 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=36.3
Q ss_pred HHHHHHHHhccCcEEEEec-ccccEEEeeccCCCCCcccccCCCchhcc
Q 039716 221 DNFLHFVLQNAPVVMGHQD-KELRYRFIYNHFPSLHEEDILGKTDVEIF 268 (1002)
Q Consensus 221 ~~~l~~il~~~p~~i~~~d-~~~~~~~~~~~~~~~~~e~iiGk~~~e~~ 268 (1002)
+.-.+.++.+.|+++...| .++.+.|.|..|..+-..+++|++..++.
T Consensus 101 ~~~~~~~l~~~p~gi~~~~~~~~~i~W~N~~~~~~~~~~~~g~~i~~~~ 149 (838)
T PRK14538 101 SQIGEEVLNELPIGIVLIDISSKEIQWLNPYANFILKNPEINTPLAQIN 149 (838)
T ss_pred hHHHHHHHHhCCceEEEEeCCCCEEEEECHHHHHHhCccccCCcHHHhc
Confidence 3445667889999999999 78999999987655544448888877643
No 336
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=24.76 E-value=4.6e+02 Score=27.18 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=34.8
Q ss_pred CHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccE-EEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHH
Q 039716 917 DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI-IAMTANALSESAEECFANGMDSFVSKPVTFQKLKE 995 (1002)
Q Consensus 917 dG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipI-IalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~ 995 (1002)
-|++.++.||+. ...|+ +.+..+........|.++|+|..+.-....+....
T Consensus 43 ~~~~~v~~i~~~---------------------------~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~ 95 (210)
T TIGR01163 43 FGPPVLEALRKY---------------------------TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHR 95 (210)
T ss_pred cCHHHHHHHHhc---------------------------CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHH
Confidence 578889999852 22455 42444455677888889999987775554444444
Q ss_pred HH
Q 039716 996 CL 997 (1002)
Q Consensus 996 ~l 997 (1002)
.+
T Consensus 96 ~~ 97 (210)
T TIGR01163 96 LL 97 (210)
T ss_pred HH
Confidence 43
No 337
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=24.76 E-value=3.4e+02 Score=29.14 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=48.0
Q ss_pred cCHHHHHHHHHcCCCc-EEEEcCCCCC---CCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 039716 890 NNGVEAVHAVQCQNYD-LILMDVCMPV---MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965 (1002)
Q Consensus 890 ~~G~eAl~~~~~~~~D-lIlmDi~MP~---mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa 965 (1002)
.+..+..+.+....+| +++.|+.--+ ..-++++++|++. ..+||++--+
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~---------------------------~~~pv~~~GG 79 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEE---------------------------VFIPLTVGGG 79 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHh---------------------------CCCCEEEeCC
Confidence 3666666666666665 6666665311 1125677777752 2489999999
Q ss_pred CCCHHHHHHHHHcCCCEEEe
Q 039716 966 NALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 966 ~~~~~~~~~~~~aG~d~~l~ 985 (1002)
-.+.++..+++..|++..+.
T Consensus 80 I~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 80 IRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHcCCceEEE
Confidence 99999999999999987654
No 338
>PLN02591 tryptophan synthase
Probab=24.71 E-value=9.1e+02 Score=26.38 Aligned_cols=98 Identities=9% Similarity=0.080 Sum_probs=64.0
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCeEE-EE-c-CHHHHHHHHHcCCCcEEEEcCCCCCCC---------HHHHHHHHhccc
Q 039716 862 ILLVEDNKINVMVAKSMMKQLGHSID-VV-N-NGVEAVHAVQCQNYDLILMDVCMPVMD---------GLKATRLIRSFE 929 (1002)
Q Consensus 862 ILiVeDn~~n~~~l~~~L~~~g~~v~-~a-~-~G~eAl~~~~~~~~DlIlmDi~MP~md---------G~e~~~~IR~~~ 929 (1002)
+||.|=...-..-+...+++.|.... .+ . ...+=+.++.....+.|-+ +.+.+.. -.+.++.+|+.
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~-Vs~~GvTG~~~~~~~~~~~~i~~vk~~- 187 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYL-VSSTGVTGARASVSGRVESLLQELKEV- 187 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEE-eeCCCCcCCCcCCchhHHHHHHHHHhc-
Confidence 66776665666677788888897644 33 2 3344456665555555543 1112111 23446777752
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCC
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP 987 (1002)
..+||++=.+-...++..++.+.|+|+.+.-.
T Consensus 188 --------------------------~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 188 --------------------------TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred --------------------------CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 46899988888889999999999999999755
No 339
>PRK05637 anthranilate synthase component II; Provisional
Probab=24.54 E-value=1.2e+02 Score=32.17 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=37.9
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEE
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlm 909 (1002)
.+|||+|-..-+..-+...|++.|+.+.++.+... ++.+....||.|++
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAANPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhcCCCEEEE
Confidence 37999998887888899999999999888876432 34444568888887
No 340
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=24.37 E-value=2.9e+02 Score=30.11 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=42.1
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCC--eEEE-EcCHHHHHHHHHc-----CCCcEEEEcCC
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGH--SIDV-VNNGVEAVHAVQC-----QNYDLILMDVC 912 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~--~v~~-a~~G~eAl~~~~~-----~~~DlIlmDi~ 912 (1002)
.+|.-+|=++......+..+++.|+ .|.. ..+..+.+..+.. ..||+||+|..
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 4799999999999999999999985 3443 4566777766542 58999999986
No 341
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.23 E-value=3.5e+02 Score=29.59 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCc-EEEEcCCCCC-CC--HHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 039716 892 GVEAVHAVQCQNYD-LILMDVCMPV-MD--GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967 (1002)
Q Consensus 892 G~eAl~~~~~~~~D-lIlmDi~MP~-md--G~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~ 967 (1002)
..+.++.+.....+ ++++|+.--+ +. -+++++.+++. ..+|||+--+-.
T Consensus 154 ~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~---------------------------~~ipvIasGGv~ 206 (258)
T PRK01033 154 PLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNA---------------------------LKIPLIALGGAG 206 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhh---------------------------CCCCEEEeCCCC
Confidence 34555555544444 6777664221 12 26777788742 458999999999
Q ss_pred CHHHHHHHH-HcCCCEEEe-CCCCh
Q 039716 968 LSESAEECF-ANGMDSFVS-KPVTF 990 (1002)
Q Consensus 968 ~~~~~~~~~-~aG~d~~l~-KP~~~ 990 (1002)
+.++..+++ ..|+++.+. ++|.+
T Consensus 207 s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 207 SLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred CHHHHHHHHHHCCCCEEEEcceeee
Confidence 999999999 799997653 44443
No 342
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=24.21 E-value=4.1e+02 Score=28.52 Aligned_cols=42 Identities=33% Similarity=0.450 Sum_probs=32.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHc-CCCEEEe-CC-----CChHHHHHHHH
Q 039716 957 RIPIIAMTANALSESAEECFAN-GMDSFVS-KP-----VTFQKLKECLE 998 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~a-G~d~~l~-KP-----~~~~~L~~~l~ 998 (1002)
.+|+|+.-+-.+.++..++++. |+|.++. ++ +++.+++..++
T Consensus 193 ~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~~~ 241 (243)
T cd04731 193 NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEYLA 241 (243)
T ss_pred CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHHHh
Confidence 5899999999999999999997 9987765 33 44566555554
No 343
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=24.15 E-value=1e+02 Score=31.90 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=36.0
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEE
Q 039716 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909 (1002)
Q Consensus 862 ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlm 909 (1002)
|||||-....-.-+..+|++.|+.+.+..+-...++.+....||.|++
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iil 49 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVI 49 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEE
Confidence 899998888888888999999999888765432344455567896665
No 344
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=24.12 E-value=4.9e+02 Score=26.57 Aligned_cols=82 Identities=21% Similarity=0.187 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCC-------CHHHHHHHHhccccCCCchhhhhhhhcccC
Q 039716 874 VAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVM-------DGLKATRLIRSFEDTGNWDAAAEAGIEQAM 946 (1002)
Q Consensus 874 ~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~m-------dG~e~~~~IR~~~~~~~~~~~~~~~~~~~~ 946 (1002)
..+..+....+--..+.|..|+.++ .....|.|+.--.-|-. -|++..+.+++.
T Consensus 87 ~~r~~~~~~~~ig~S~h~~~e~~~a-~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~------------------ 147 (180)
T PF02581_consen 87 EARKLLGPDKIIGASCHSLEEAREA-EELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARA------------------ 147 (180)
T ss_dssp HHHHHHTTTSEEEEEESSHHHHHHH-HHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH------------------
T ss_pred HhhhhcccceEEEeecCcHHHHHHh-hhcCCCEEEECCccCCCCCccccccCHHHHHHHHHh------------------
Confidence 3455555443334467888885544 45677999987654433 388888888753
Q ss_pred CCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 947 PSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 947 ~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
.++||+|+-+- ..++...+.++|++++-
T Consensus 148 ---------~~~pv~AlGGI-~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 148 ---------SPIPVYALGGI-TPENIPELREAGADGVA 175 (180)
T ss_dssp ---------TSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred ---------CCCCEEEEcCC-CHHHHHHHHHcCCCEEE
Confidence 24899999886 46778889999999874
No 345
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=24.04 E-value=1.2e+02 Score=33.87 Aligned_cols=55 Identities=22% Similarity=0.479 Sum_probs=43.4
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcC--C---eEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCC
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLG--H---SID-VVNNGVEAVHAVQCQNYDLILMDVCMPV 915 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g--~---~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~ 915 (1002)
-+|-+||=|+....+.+.+|.... . ++. ...||.+-++.... .||+||+|..=|.
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~D~tdp~ 161 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIVDSTDPV 161 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC-cCCEEEEcCCCCC
Confidence 379999999999999999998654 2 233 45788877776655 8999999999883
No 346
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.00 E-value=2.4e+02 Score=33.18 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=45.8
Q ss_pred HHHHHHHcCCCcEEEEcCCCCC-CCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHH
Q 039716 894 EAVHAVQCQNYDLILMDVCMPV-MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESA 972 (1002)
Q Consensus 894 eAl~~~~~~~~DlIlmDi~MP~-mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~ 972 (1002)
+-++.+-....|+|.+|..-+. ..-.++++.||.. .|+++|| +-.-...+..
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~--------------------------~p~~~vi-~g~V~T~e~a 208 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTK--------------------------YPNLDLI-AGNIVTKEAA 208 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhh--------------------------CCCCcEE-EEecCCHHHH
Confidence 4455556678999999998874 4556778888852 3456654 3344567888
Q ss_pred HHHHHcCCCEEE
Q 039716 973 EECFANGMDSFV 984 (1002)
Q Consensus 973 ~~~~~aG~d~~l 984 (1002)
..+.++|+|...
T Consensus 209 ~~l~~aGaD~I~ 220 (404)
T PRK06843 209 LDLISVGADCLK 220 (404)
T ss_pred HHHHHcCCCEEE
Confidence 899999999875
No 347
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=23.96 E-value=6.3e+02 Score=29.93 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=59.3
Q ss_pred CCeEEEEecCHHH---HHHHHHHHHhcCCeEEEEcCHHHHHHHHHc-CCCcEEEEcCCCCCCCHH--HHHHHHhccccCC
Q 039716 859 KPKILLVEDNKIN---VMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGL--KATRLIRSFEDTG 932 (1002)
Q Consensus 859 ~~~ILiVeDn~~n---~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~-~~~DlIlmDi~MP~mdG~--e~~~~IR~~~~~~ 932 (1002)
+.+|.+|+-++.- ...+..+-+..|+.+..+.+..+....+.. ..||+||+|. |++... ..+..++.+-..
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt--~G~~~~d~~~~~~L~~ll~~- 327 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDT--AGRSQRDKRLIEELKALIEF- 327 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCEEEEeC--CCCCCCCHHHHHHHHHHHhc-
Confidence 4579999888742 233455555677888888887766555543 4699999997 444322 223333322110
Q ss_pred CchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHH----HcCCCEEE
Q 039716 933 NWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF----ANGMDSFV 984 (1002)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~----~aG~d~~l 984 (1002)
...+.-.++++++.....+..+.. ..|.+.+|
T Consensus 328 --------------------~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI 363 (424)
T PRK05703 328 --------------------SGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLI 363 (424)
T ss_pred --------------------cCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 001223367788888777766543 34665554
No 348
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.76 E-value=9.1e+02 Score=28.04 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCC-------CCCCCHHHHHHHHhccccCCCchhhhhhh
Q 039716 872 VMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVC-------MPVMDGLKATRLIRSFEDTGNWDAAAEAG 941 (1002)
Q Consensus 872 ~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~-------MP~mdG~e~~~~IR~~~~~~~~~~~~~~~ 941 (1002)
..+++.+-+ .+..+.+- .+..+-.+.+.....|+|.++-. .+.-+-..+.+.+++
T Consensus 121 ~~iv~~~~~-~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-------------- 185 (368)
T PRK08649 121 TERIAEIRD-AGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-------------- 185 (368)
T ss_pred HHHHHHHHh-CeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH--------------
Confidence 344444443 35444332 25667777778889999999652 222245556666654
Q ss_pred hcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 942 IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 942 ~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
..+|||+ ..-...+...+++++|+|.++.
T Consensus 186 --------------~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 186 --------------LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred --------------CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 2488987 4455677888899999999854
No 349
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.72 E-value=6e+02 Score=28.07 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=45.5
Q ss_pred EEEEecCHHH---HHHHHHHHHhcCCeEEEE-------cCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhc
Q 039716 862 ILLVEDNKIN---VMVAKSMMKQLGHSIDVV-------NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRS 927 (1002)
Q Consensus 862 ILiVeDn~~n---~~~l~~~L~~~g~~v~~a-------~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~ 927 (1002)
.+|.+|++.- ...++..+++.|.+|... .|-...+..++...||+|++-.. ..++..+++.+++
T Consensus 141 ail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~--~~~~~~~~~~~~~ 214 (312)
T cd06346 141 ATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGY--PETGSGILRSAYE 214 (312)
T ss_pred EEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecc--cchHHHHHHHHHH
Confidence 3445666643 445677888889876532 46777888899999999998644 3378788888875
No 350
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.68 E-value=2.7e+02 Score=29.92 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=50.4
Q ss_pred EEcCHHHHHHHHHcCCCcEEEEcCCCCCC-CHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 039716 888 VVNNGVEAVHAVQCQNYDLILMDVCMPVM-DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966 (1002)
Q Consensus 888 ~a~~G~eAl~~~~~~~~DlIlmDi~MP~m-dG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~ 966 (1002)
.-.+..++++.+...--.+|++|+.=-+| .|++ .+... .+++|||+--+-
T Consensus 141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d---~l~~~--------------------------~~~~pviasGGv 191 (228)
T PRK04128 141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIE---EIERF--------------------------WGDEEFIYAGGV 191 (228)
T ss_pred CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHH---HHHHh--------------------------cCCCCEEEECCC
Confidence 34466677776655434699999976654 7777 33221 135899999999
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 039716 967 ALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 967 ~~~~~~~~~~~aG~d~~l~ 985 (1002)
.+.++..++.+.|+++.+.
T Consensus 192 ~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 192 SSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CCHHHHHHHHHCCCCEEEE
Confidence 9999999999999998764
No 351
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=23.51 E-value=2.3e+02 Score=28.91 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=52.1
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCeEEEEc-------CHHHHHHHHHcCCCcEEEE---cCCCCCC-CHHHHHHHHhcc
Q 039716 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVN-------NGVEAVHAVQCQNYDLILM---DVCMPVM-DGLKATRLIRSF 928 (1002)
Q Consensus 862 ILiVeDn~~n~~~l~~~L~~~g~~v~~a~-------~G~eAl~~~~~~~~DlIlm---Di~MP~m-dG~e~~~~IR~~ 928 (1002)
|||=|-+..-++.+...-++.|.++.... +|.|.++++++..+|-||. |.-.++. -|-++++.+-..
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h 80 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANH 80 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcC
Confidence 67777888899999999999999988764 8999999999988875443 4555544 577788877653
No 352
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=23.30 E-value=3.2e+02 Score=29.81 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=68.9
Q ss_pred ecCHHHHHHHHHHHHhcC-Ce------EEEEcCHHHHHHHHHcCCCcEEEEcCCCC-CCCHHHHHHHHhccccCCCchhh
Q 039716 866 EDNKINVMVAKSMMKQLG-HS------IDVVNNGVEAVHAVQCQNYDLILMDVCMP-VMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 866 eDn~~n~~~l~~~L~~~g-~~------v~~a~~G~eAl~~~~~~~~DlIlmDi~MP-~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
+|..++...++.+++..+ .. ++.+.|..+|++.+....+|=||.-=.-| ..+|++.++.+.+..
T Consensus 97 ~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a-------- 168 (248)
T PRK11572 97 VDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQDAEQGLSLIMELIAAS-------- 168 (248)
T ss_pred CCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhc--------
Confidence 466678888888887654 32 44567999999999999999999887666 578888888886521
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
.. .+|+.-+-...+...+....|+..|-
T Consensus 169 ------------------~~-~~Im~GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 169 ------------------DG-PIIMAGAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred ------------------CC-CEEEeCCCCCHHHHHHHHHcCCCEEe
Confidence 11 24777777778888887788988774
No 353
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=23.07 E-value=1.5e+02 Score=31.05 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCH-------HHHHHHHHcCCCcEEEEcCCCCCCCH--HHHHHHHhccccCCCchhhhhhh
Q 039716 871 NVMVAKSMMKQLGHSIDVVNNG-------VEAVHAVQCQNYDLILMDVCMPVMDG--LKATRLIRSFEDTGNWDAAAEAG 941 (1002)
Q Consensus 871 n~~~l~~~L~~~g~~v~~a~~G-------~eAl~~~~~~~~DlIlmDi~MP~mdG--~e~~~~IR~~~~~~~~~~~~~~~ 941 (1002)
-.+.|+.+-+.+|..+..+.+. .++++.+....+|+||+|- |+++- -+....++++...
T Consensus 44 a~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT--~Gr~~~d~~~~~el~~~~~~---------- 111 (196)
T PF00448_consen 44 AVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLVLIDT--AGRSPRDEELLEELKKLLEA---------- 111 (196)
T ss_dssp HHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE---SSSSTHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEEEEec--CCcchhhHHHHHHHHHHhhh----------
Confidence 5567888888889888776532 3456666778899999998 65544 3445555543211
Q ss_pred hcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHH---H-cCCCEEE
Q 039716 942 IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF---A-NGMDSFV 984 (1002)
Q Consensus 942 ~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~---~-aG~d~~l 984 (1002)
..+.-.+++|+|....++...+. + .|.+++|
T Consensus 112 ------------~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lI 146 (196)
T PF00448_consen 112 ------------LNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLI 146 (196)
T ss_dssp ------------HSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEE
T ss_pred ------------cCCccceEEEecccChHHHHHHHHHhhcccCceEE
Confidence 01334577888887777654432 3 3667655
No 354
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=22.84 E-value=1.1e+02 Score=30.48 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=38.6
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEE---------------EEcCHHHHHHHHH----cCCCcEEEEcCCCCCCCH
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSID---------------VVNNGVEAVHAVQ----CQNYDLILMDVCMPVMDG 918 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~---------------~a~~G~eAl~~~~----~~~~DlIlmDi~MP~mdG 918 (1002)
.+.++||..--.....-+...|+..++.+. +...+- ....+. ...||+||||= --.+|-
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at-~~~~~~~p~~~~~yd~II~DE-cH~~Dp 109 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT-YGHFLLNPCRLKNYDVIIMDE-CHFTDP 109 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH-HHHHHHTSSCTTS-SEEEECT-TT--SH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH-HHHHhcCcccccCccEEEEec-cccCCH
Confidence 467899999999998888899986653332 212221 222222 24699999993 334555
Q ss_pred HHH--HHHHhcc
Q 039716 919 LKA--TRLIRSF 928 (1002)
Q Consensus 919 ~e~--~~~IR~~ 928 (1002)
-.+ .-.|+..
T Consensus 110 ~sIA~rg~l~~~ 121 (148)
T PF07652_consen 110 TSIAARGYLREL 121 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhhheeHHHh
Confidence 443 3455544
No 355
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=22.60 E-value=1.5e+02 Score=37.60 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=44.0
Q ss_pred HHHHHHHHhccCcEEEEecccccEEEeecc---CCCCCcccccCCCchhccCccc
Q 039716 221 DNFLHFVLQNAPVVMGHQDKELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAG 272 (1002)
Q Consensus 221 ~~~l~~il~~~p~~i~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~ 272 (1002)
+++-+.+|+.+--.++++..+|++.||.+. +.++..+|++|.+.++++.+..
T Consensus 94 ~eL~~LmLeAlDGF~fvV~cdG~IvyVSeSVT~~L~y~QsDL~~qSly~ilhp~d 148 (803)
T KOG3561|consen 94 DELTHLILEALDGFLFVVNCDGRIVYVSESVTSVLGYLQSDLMGQSLYDILHPLD 148 (803)
T ss_pred HHHHHHHHHHhcCeEEEEecCceEEEEecchHHhhCcCHHHHhcchHHHhcCccc
Confidence 566788999999899999999999999775 4577889999999999987643
No 356
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=22.47 E-value=2e+02 Score=32.93 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=38.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHcCCCEE------EeC-CCChHHHHHHHHhhc
Q 039716 957 RIPIIAMTANALSESAEECFANGMDSF------VSK-PVTFQKLKECLEQYF 1001 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~aG~d~~------l~K-P~~~~~L~~~l~~~l 1001 (1002)
.+|||++.+-.+.++..+++.+|||.+ +.+ |.-+.++..-|.+|+
T Consensus 289 ~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l 340 (344)
T PRK05286 289 RLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLL 340 (344)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 589999999999999999999999854 555 888888888888775
No 357
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=22.39 E-value=4.3e+02 Score=28.16 Aligned_cols=68 Identities=24% Similarity=0.244 Sum_probs=51.9
Q ss_pred EEcCHHHHHHHHHcCCCcEEEEcC-------CCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccE
Q 039716 888 VVNNGVEAVHAVQCQNYDLILMDV-------CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960 (1002)
Q Consensus 888 ~a~~G~eAl~~~~~~~~DlIlmDi-------~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipI 960 (1002)
.+.+-+||.++.+.. +|.|..-- .+|.-.|++..+.++.. ..+|+
T Consensus 110 S~h~~eea~~A~~~g-~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~---------------------------~~iP~ 161 (211)
T COG0352 110 STHDLEEALEAEELG-ADYVGLGPIFPTSTKPDAPPLGLEGLREIREL---------------------------VNIPV 161 (211)
T ss_pred ecCCHHHHHHHHhcC-CCEEEECCcCCCCCCCCCCccCHHHHHHHHHh---------------------------CCCCE
Confidence 355888888776654 88888654 35567899999999863 23899
Q ss_pred EEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 961 IAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 961 IalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
+++-+- +.+...+.+++|+++.-
T Consensus 162 vAIGGi-~~~nv~~v~~~Ga~gVA 184 (211)
T COG0352 162 VAIGGI-NLENVPEVLEAGADGVA 184 (211)
T ss_pred EEEcCC-CHHHHHHHHHhCCCeEE
Confidence 999875 57888999999998763
No 358
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=22.34 E-value=93 Score=42.01 Aligned_cols=50 Identities=26% Similarity=0.487 Sum_probs=28.9
Q ss_pred EEEEecCCCCCcCcHh--------hhhhhccCCCc---cccCcCCC-ccccHHHHHHHHHHh
Q 039716 594 CDVYDTGIGIPENALP--------TLFRKYMQVSA---DHARKYGG-TGLGLAICKQLVELM 643 (1002)
Q Consensus 594 i~V~DtGiGI~~e~l~--------~IF~pF~q~~~---~~~~~~~G-tGLGLaI~k~Lve~~ 643 (1002)
|+|.|+|.|||-+.-+ -||.-...... ...+..|| .|.|.+.|.-+-+.+
T Consensus 96 IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~yKvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 96 ISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEKRVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred EEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCceeeecccccCCccccccccceE
Confidence 7899999999976543 13333222211 11112234 599999887766543
No 359
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.25 E-value=3e+02 Score=28.08 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=49.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhc--CCeEEEEcCH-------HHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhc
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQL--GHSIDVVNNG-------VEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRS 927 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~--g~~v~~a~~G-------~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~ 927 (1002)
.+.+|-++-..+.....+...|++. |..+.-+.+| .+.++.+....+|+|++-+-+|... ..+...+.
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE--~~~~~~~~ 123 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQE--RWIARHRQ 123 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHH--HHHHHHHH
Confidence 3458888888888877777888766 4555555544 4455677889999999999999754 34555554
No 360
>PRK12704 phosphodiesterase; Provisional
Probab=22.23 E-value=64 Score=39.18 Aligned_cols=40 Identities=8% Similarity=0.043 Sum_probs=32.1
Q ss_pred EEEEcCCCCHH--HHHHHHHcCCCEEEeCCCChHHHHHHHHh
Q 039716 960 IIAMTANALSE--SAEECFANGMDSFVSKPVTFQKLKECLEQ 999 (1002)
Q Consensus 960 IIalTa~~~~~--~~~~~~~aG~d~~l~KP~~~~~L~~~l~~ 999 (1002)
+|++|+++... ....+++.|+.|+..||+.++++...+++
T Consensus 252 ~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~ 293 (520)
T PRK12704 252 AVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARK 293 (520)
T ss_pred eEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHH
Confidence 67788877665 77788888888889999988888777654
No 361
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=22.13 E-value=2.2e+02 Score=29.96 Aligned_cols=54 Identities=24% Similarity=0.479 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHhhcCChHHHHHHHHHH
Q 039716 166 DTVEYWKQRALDLEKMLEASGQREQAL---MEKLNESVTNLEKQSSPVEELSQILKR 219 (1002)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~e~~l---~~~l~~~~~~l~~~~~~~~~~~~~l~~ 219 (1002)
.+-.||+.-|-.-+..|...++.-..| .+.+.+.+..|...+..+.++.+.++.
T Consensus 104 Pse~YWk~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~ 160 (200)
T PF07412_consen 104 PSENYWKELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQY 160 (200)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455799999988777777766554444 345556666666655555555444433
No 362
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=22.11 E-value=3.6e+02 Score=30.26 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=47.2
Q ss_pred EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 039716 886 IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965 (1002)
Q Consensus 886 v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa 965 (1002)
...+.+-+||.+++.. .+|+|++|-.-| -+=-++.+.++ .++ +|..|+
T Consensus 212 eVEv~sleea~ea~~~-gaDiI~LDn~s~-e~~~~av~~~~-----------------------------~~~-~ieaSG 259 (296)
T PRK09016 212 EVEVENLDELDQALKA-GADIIMLDNFTT-EQMREAVKRTN-----------------------------GRA-LLEVSG 259 (296)
T ss_pred EEEeCCHHHHHHHHHc-CCCEEEeCCCCh-HHHHHHHHhhc-----------------------------CCe-EEEEEC
Confidence 4567899999998874 589999996555 11222222222 123 678899
Q ss_pred CCCHHHHHHHHHcCCCEEE
Q 039716 966 NALSESAEECFANGMDSFV 984 (1002)
Q Consensus 966 ~~~~~~~~~~~~aG~d~~l 984 (1002)
....+...+..+.|+|.+-
T Consensus 260 GI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 260 NVTLETLREFAETGVDFIS 278 (296)
T ss_pred CCCHHHHHHHHhcCCCEEE
Confidence 9999999999999998654
No 363
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=22.01 E-value=1.1e+03 Score=28.47 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=62.4
Q ss_pred CCeEEEEecCH---HHHHHHHHHHHh-c-CCeEEE--EcCHHHHHHHHHcCCCcEEEEcC--------------CCCCCC
Q 039716 859 KPKILLVEDNK---INVMVAKSMMKQ-L-GHSIDV--VNNGVEAVHAVQCQNYDLILMDV--------------CMPVMD 917 (1002)
Q Consensus 859 ~~~ILiVeDn~---~n~~~l~~~L~~-~-g~~v~~--a~~G~eAl~~~~~~~~DlIlmDi--------------~MP~md 917 (1002)
+..|+++|--. .+..-+-..+++ . +..+.. +.+.++|..++. ...|.|.+-+ ..|...
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~-aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~ 338 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ-AGVDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH-cCcCEEEECCCCCccccCccccccCCCccc
Confidence 34577776432 222223334443 3 344433 678888888775 5788887632 223333
Q ss_pred HHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 918 GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 918 G~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
-+..+..+.+ ...+|||+-.+-....+..+|+.+||+.+..
T Consensus 339 ~i~~~~~~~~---------------------------~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 339 AVYKVASIAA---------------------------QHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred HHHHHHHHHH---------------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4444555543 1258999999999999999999999998763
No 364
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=21.99 E-value=4.9e+02 Score=24.09 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCCcEEEEcCC--CCCCCHHHHH
Q 039716 893 VEAVHAVQCQNYDLILMDVC--MPVMDGLKAT 922 (1002)
Q Consensus 893 ~eAl~~~~~~~~DlIlmDi~--MP~mdG~e~~ 922 (1002)
.+..++++...+|+|+--.. .+.-+|+.+.
T Consensus 57 ~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iR 88 (110)
T cd01424 57 PNIVDLIKNGEIQLVINTPSGKRAIRDGFSIR 88 (110)
T ss_pred hhHHHHHHcCCeEEEEECCCCCccCccHHHHH
Confidence 56677788899999987432 2334676433
No 365
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=21.97 E-value=4.6e+02 Score=30.55 Aligned_cols=62 Identities=19% Similarity=0.116 Sum_probs=42.5
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCe-E-EEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHH-Hhc
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHS-I-DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRL-IRS 927 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~-v-~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~-IR~ 927 (1002)
+|..+|=|+...+.++.-++..|.. + ....|..+.+.. ...||+|++|- |+. +.+++.. |+.
T Consensus 83 ~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~~~fD~V~lDP--~Gs-~~~~l~~al~~ 147 (382)
T PRK04338 83 KVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--ERKFDVVDIDP--FGS-PAPFLDSAIRS 147 (382)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--cCCCCEEEECC--CCC-cHHHHHHHHHH
Confidence 6999999999999999888877764 3 233444444332 46799999996 544 3455554 554
No 366
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.88 E-value=7.5e+02 Score=24.10 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhhh---hcccccccCCCCCCccccchhhhhhhhhcCC
Q 039716 90 VRLLREELDNLSRQRQESELKKLEILE---EHRFEEEGYGGDKRPISIMDELSDMWKDVCP 147 (1002)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (1002)
.+.|++++..|.+++.+.+...-++-. ...+-...-.|..-.|||.+.+| .+-.++.
T Consensus 15 ~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~y-v~~~v~~ 74 (140)
T PRK03947 15 LQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSF-VKAKVKD 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcE-EEEEecC
Confidence 456888888888888887765544321 11221111145666778887776 3335553
No 367
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=21.80 E-value=2.6e+02 Score=29.02 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=43.7
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCe--EE-EEcCHHHHHHHHHc--CCCcEEEEcCCCCCCCHHHHHHHHh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHS--ID-VVNNGVEAVHAVQC--QNYDLILMDVCMPVMDGLKATRLIR 926 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~--v~-~a~~G~eAl~~~~~--~~~DlIlmDi~MP~mdG~e~~~~IR 926 (1002)
+|..||.++.....++.-++..|+. +. ...|..+++..+.. ..||+|++|-=...-.-.+++..+.
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCE 144 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHH
Confidence 7999999999999999999888763 33 34555566654432 2489999996443322233444443
No 368
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=21.72 E-value=2e+02 Score=30.12 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=36.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEE
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlm 909 (1002)
.+|+|+|=.--|...+...|+..|+++....+..+ + ..||.|++
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~--~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I--LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H--ccCCEEEE
Confidence 37999999999999999999999999998876432 2 37999888
No 369
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=21.65 E-value=1.3e+02 Score=33.35 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=25.6
Q ss_pred CccEE--EEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 957 RIPII--AMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 957 ~ipII--alTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
++||| +..+-..+++...+++.|+|++..
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~melGAdGVaV 227 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQLGADGVFV 227 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHcCCCEEEE
Confidence 48998 888888999999999999999863
No 370
>CHL00101 trpG anthranilate synthase component 2
Probab=21.29 E-value=1.2e+02 Score=31.51 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=36.4
Q ss_pred EEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEE
Q 039716 862 ILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILM 909 (1002)
Q Consensus 862 ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlm 909 (1002)
|||+|-..-.-..+...|++.|+.+.++.+..-.+..+....||.|++
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEE
Confidence 889988877778889999999999988876643334444457888775
No 371
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=21.27 E-value=3.2e+02 Score=32.91 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=49.6
Q ss_pred EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCH-HHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC-
Q 039716 888 VVNNGVEAVHAVQCQNYDLILMDVCMPVMDG-LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA- 965 (1002)
Q Consensus 888 ~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG-~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa- 965 (1002)
+..+..+-+..+.....|.|.+|..-+.... .++++.||+ .++.+|||+ +
T Consensus 222 ~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~--------------------------~~~~~~vi~--g~ 273 (475)
T TIGR01303 222 INGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA--------------------------LDLGVPIVA--GN 273 (475)
T ss_pred eCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH--------------------------HCCCCeEEE--ec
Confidence 3356666667777788999999998754422 456777775 245789888 4
Q ss_pred CCCHHHHHHHHHcCCCEEE
Q 039716 966 NALSESAEECFANGMDSFV 984 (1002)
Q Consensus 966 ~~~~~~~~~~~~aG~d~~l 984 (1002)
-...+....+.++|+|.+-
T Consensus 274 ~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 274 VVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred cCCHHHHHHHHHhCCCEEE
Confidence 5567788889999998764
No 372
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=21.05 E-value=6.2e+02 Score=28.62 Aligned_cols=71 Identities=8% Similarity=0.003 Sum_probs=46.7
Q ss_pred EEEcCHHHHHHHHHc-----CCCcEEEEcCC--CCCC---CHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCC
Q 039716 887 DVVNNGVEAVHAVQC-----QNYDLILMDVC--MPVM---DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFK 956 (1002)
Q Consensus 887 ~~a~~G~eAl~~~~~-----~~~DlIlmDi~--MP~m---dG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1002)
..+.+-+||.+++.. ...|+|++|-. -|.- +--++.+.++.. ..
T Consensus 208 VEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~--------------------------~~ 261 (308)
T PLN02716 208 VETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI--------------------------NG 261 (308)
T ss_pred EEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh--------------------------CC
Confidence 457899999999872 56899999954 1210 212222222211 01
Q ss_pred CccEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 957 RIPIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
+. .+-.|+....+...+....|+|-.-
T Consensus 262 ~~-~lEaSGGIt~~ni~~yA~tGVD~Is 288 (308)
T PLN02716 262 RF-ETEASGNVTLDTVHKIGQTGVTYIS 288 (308)
T ss_pred Cc-eEEEECCCCHHHHHHHHHcCCCEEE
Confidence 23 4888999999999999999998543
No 373
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.98 E-value=3.6e+02 Score=30.01 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=46.0
Q ss_pred EEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 039716 887 DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966 (1002)
Q Consensus 887 ~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~ 966 (1002)
..+.|.+||.+++. ..+|.|.+|-. |.+.++++.... .+++|+++ ++.
T Consensus 194 VEv~tleea~eA~~-~gaD~I~LD~~-----~~e~l~~~v~~~-------------------------~~~i~leA-sGG 241 (277)
T PRK05742 194 VEVESLDELRQALA-AGADIVMLDEL-----SLDDMREAVRLT-------------------------AGRAKLEA-SGG 241 (277)
T ss_pred EEeCCHHHHHHHHH-cCCCEEEECCC-----CHHHHHHHHHHh-------------------------CCCCcEEE-ECC
Confidence 35788999888774 46899999843 445555554321 13577665 456
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 039716 967 ALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 967 ~~~~~~~~~~~aG~d~~l~ 985 (1002)
...+...++.+.|+|.+-+
T Consensus 242 It~~ni~~~a~tGvD~Isv 260 (277)
T PRK05742 242 INESTLRVIAETGVDYISI 260 (277)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 6788999999999997643
No 374
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=20.78 E-value=6.5e+02 Score=27.60 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCeE-EEEcCHHHHHHHHHcCCCcEEEEcC---CCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCC
Q 039716 873 MVAKSMMKQLGHSI-DVVNNGVEAVHAVQCQNYDLILMDV---CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948 (1002)
Q Consensus 873 ~~l~~~L~~~g~~v-~~a~~G~eAl~~~~~~~~DlIlmDi---~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~ 948 (1002)
..+...-..+|.++ ..+.|.+|+-.++. -..++|=++- .-=.+| ++.+..+...-
T Consensus 146 ~el~~~A~~LGm~~LVEVh~~eEl~rAl~-~ga~iIGINnRdL~tf~vd-l~~t~~la~~~------------------- 204 (254)
T COG0134 146 EELVDRAHELGMEVLVEVHNEEELERALK-LGAKIIGINNRDLTTLEVD-LETTEKLAPLI------------------- 204 (254)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHHHh-CCCCEEEEeCCCcchheec-HHHHHHHHhhC-------------------
Confidence 34445556789875 46888888877777 5566662211 111122 34566665421
Q ss_pred CCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 949 SGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 949 ~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.....+|.-|+-...++..+....|+|+||.
T Consensus 205 ------p~~~~~IsESGI~~~~dv~~l~~~ga~a~LV 235 (254)
T COG0134 205 ------PKDVILISESGISTPEDVRRLAKAGADAFLV 235 (254)
T ss_pred ------CCCcEEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 1336689999999999999999999999996
No 375
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=20.65 E-value=6.9e+02 Score=30.26 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=25.8
Q ss_pred CccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 957 RIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.+|||+=-+-....+..+|+.+||+.++.
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 48999988989999999999999998764
No 376
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=20.54 E-value=2.5e+02 Score=33.51 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=42.4
Q ss_pred HHHcCCCcEEEEcCCCCC-CCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHH
Q 039716 898 AVQCQNYDLILMDVCMPV-MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECF 976 (1002)
Q Consensus 898 ~~~~~~~DlIlmDi~MP~-mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~ 976 (1002)
.+.....|+|.+|..=+. ..-++.++.||+ .++++|||+ -.-...+....+.
T Consensus 231 ~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~--------------------------~~~~~~vi~-G~v~t~~~a~~l~ 283 (450)
T TIGR01302 231 ALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK--------------------------TYPDLDIIA-GNVATAEQAKALI 283 (450)
T ss_pred HHHHhCCCEEEEECCCCcHhHHHHHHHHHHH--------------------------hCCCCCEEE-EeCCCHHHHHHHH
Confidence 444567999999983331 345667777775 235788888 3345678888999
Q ss_pred HcCCCEEE
Q 039716 977 ANGMDSFV 984 (1002)
Q Consensus 977 ~aG~d~~l 984 (1002)
++|+|.+.
T Consensus 284 ~aGad~i~ 291 (450)
T TIGR01302 284 DAGADGLR 291 (450)
T ss_pred HhCCCEEE
Confidence 99999873
No 377
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.53 E-value=3.5e+02 Score=30.31 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=47.3
Q ss_pred EEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCC
Q 039716 887 DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTAN 966 (1002)
Q Consensus 887 ~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~ 966 (1002)
..+.+-+||.+++. ..+|+|++|-+-| -+=-++.+.++. + .++-.|+.
T Consensus 210 VEvetleea~eA~~-aGaDiImLDnmsp-e~l~~av~~~~~-----------------------------~-~~lEaSGG 257 (294)
T PRK06978 210 IEVETLAQLETALA-HGAQSVLLDNFTL-DMMREAVRVTAG-----------------------------R-AVLEVSGG 257 (294)
T ss_pred EEcCCHHHHHHHHH-cCCCEEEECCCCH-HHHHHHHHhhcC-----------------------------C-eEEEEECC
Confidence 45789999999886 5689999995444 222333333321 2 37889999
Q ss_pred CCHHHHHHHHHcCCCEEE
Q 039716 967 ALSESAEECFANGMDSFV 984 (1002)
Q Consensus 967 ~~~~~~~~~~~aG~d~~l 984 (1002)
...+...+....|+|-.-
T Consensus 258 It~~ni~~yA~tGVD~IS 275 (294)
T PRK06978 258 VNFDTVRAFAETGVDRIS 275 (294)
T ss_pred CCHHHHHHHHhcCCCEEE
Confidence 999999999999998543
No 378
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=20.46 E-value=7.3e+02 Score=26.75 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=45.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCC--eEEEE-cCHHHHHHHHHcCCCcEEEEcCCCCCC-CHHHHHHHHhc
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGH--SIDVV-NNGVEAVHAVQCQNYDLILMDVCMPVM-DGLKATRLIRS 927 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~--~v~~a-~~G~eAl~~~~~~~~DlIlmDi~MP~m-dG~e~~~~IR~ 927 (1002)
+.+|..||=++.....++..+...|. .+... .+..+ +.......||+|++...+.-+ +-..+++.+..
T Consensus 66 g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~-l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~ 137 (255)
T PRK11036 66 GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD-IAQHLETPVDLILFHAVLEWVADPKSVLQTLWS 137 (255)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH-HhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHH
Confidence 35799999999999999998888775 34443 34444 332345689999987654322 33455666654
No 379
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=20.40 E-value=6.1e+02 Score=28.50 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=43.8
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCe-EEE-EcCHHHHHHHHHcCCCcEEEEcCCCCCCCHH--HHHHHHhc
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHS-IDV-VNNGVEAVHAVQCQNYDLILMDVCMPVMDGL--KATRLIRS 927 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~-v~~-a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~--e~~~~IR~ 927 (1002)
.+|.-||=++.....++.-.+..|.. +.. ..|..+.... ....||+|++| |-..|+ ++++.|..
T Consensus 196 ~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-~~~~~D~Vv~d---PPr~G~~~~~~~~l~~ 263 (315)
T PRK03522 196 MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-QGEVPDLVLVN---PPRRGIGKELCDYLSQ 263 (315)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-cCCCCeEEEEC---CCCCCccHHHHHHHHH
Confidence 47999999999999888888887763 433 4555544322 23469999999 434553 66666654
No 380
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.33 E-value=8.6e+02 Score=25.91 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=55.3
Q ss_pred CHHHHHHHHHcCCCc-EEEEcCC----CCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 039716 891 NGVEAVHAVQCQNYD-LILMDVC----MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965 (1002)
Q Consensus 891 ~G~eAl~~~~~~~~D-lIlmDi~----MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa 965 (1002)
+..+....+....++ ++++|+. +.+ -.++.++.+++. ..+||++-.+
T Consensus 150 ~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g-~~~~~i~~i~~~---------------------------~~iPvia~GG 201 (241)
T PRK13585 150 TPVEAAKRFEELGAGSILFTNVDVEGLLEG-VNTEPVKELVDS---------------------------VDIPVIASGG 201 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecCCCCcCC-CCHHHHHHHHHh---------------------------CCCCEEEeCC
Confidence 456666666666666 4555653 222 346778888752 2489999999
Q ss_pred CCCHHHHHHHHHcCCCEEE------eCCCChHHHHHHH
Q 039716 966 NALSESAEECFANGMDSFV------SKPVTFQKLKECL 997 (1002)
Q Consensus 966 ~~~~~~~~~~~~aG~d~~l------~KP~~~~~L~~~l 997 (1002)
-.+.++..+++..|++.++ ..|+.+.++...+
T Consensus 202 I~~~~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~~~ 239 (241)
T PRK13585 202 VTTLDDLRALKEAGAAGVVVGSALYKGKFTLEEAIEAV 239 (241)
T ss_pred CCCHHHHHHHHHcCCCEEEEEHHHhcCCcCHHHHHHHh
Confidence 8889999999999999865 4677777665544
No 381
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=20.22 E-value=8e+02 Score=27.82 Aligned_cols=53 Identities=15% Similarity=0.323 Sum_probs=33.2
Q ss_pred CCeEEEEecCHHHH---HHHHHHHHhcCCeEEEEc---CH----HHHHHHHHcCCCcEEEEcC
Q 039716 859 KPKILLVEDNKINV---MVAKSMMKQLGHSIDVVN---NG----VEAVHAVQCQNYDLILMDV 911 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~---~~l~~~L~~~g~~v~~a~---~G----~eAl~~~~~~~~DlIlmDi 911 (1002)
+.+|+|++-|.... ..+...-...|..+..+. +. .+++.......||+||+|.
T Consensus 142 g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDT 204 (318)
T PRK10416 142 GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDT 204 (318)
T ss_pred CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 45799998776322 224444555666665543 22 3555555678899999998
No 382
>PRK04457 spermidine synthase; Provisional
Probab=20.15 E-value=8.9e+02 Score=26.47 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=45.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcC--CeEE-EEcCHHHHHHHHHcCCCcEEEEcCC----CCC-CCHHHHHHHHhc
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLG--HSID-VVNNGVEAVHAVQCQNYDLILMDVC----MPV-MDGLKATRLIRS 927 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g--~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~----MP~-mdG~e~~~~IR~ 927 (1002)
..+|..||=++....+.+..+...+ ..+. ...|+.+.+... ...||+|++|.. +|. +.-.++.+.++.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~ 165 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-RHSTDVILVDGFDGEGIIDALCTQPFFDDCRN 165 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-CCCCCEEEEeCCCCCCCccccCcHHHHHHHHH
Confidence 4579999999999999988876432 3443 347888777643 357999999962 221 122466666654
No 383
>PLN02476 O-methyltransferase
Probab=20.04 E-value=3.9e+02 Score=29.69 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=41.6
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCe--EEE-EcCHHHHHHHHH----cCCCcEEEEcCC
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHS--IDV-VNNGVEAVHAVQ----CQNYDLILMDVC 912 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~--v~~-a~~G~eAl~~~~----~~~~DlIlmDi~ 912 (1002)
.+|.-+|=++....+.+..+++.|+. |.. ..+..+.+..+. ...||+||+|..
T Consensus 144 G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 144 GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 36899999999999999999999974 443 356667666553 257999999985
No 384
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.01 E-value=1.4e+02 Score=27.28 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=42.9
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEE--cCHHHHHH-HHH--cCCCcEEEEcCCCCCCCHHHHHHHHhcc
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVV--NNGVEAVH-AVQ--CQNYDLILMDVCMPVMDGLKATRLIRSF 928 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a--~~G~eAl~-~~~--~~~~DlIlmDi~MP~mdG~e~~~~IR~~ 928 (1002)
+||||-....+...++..+++.|+..... .+|.+--. .+. -...|+||+=.. .-+-.++..+++.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~---~vsH~~~~~vk~~ 70 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTD---YVSHNAMWKVKKA 70 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeC---CcChHHHHHHHHH
Confidence 48999998888889999999999998877 22222221 121 245788876332 3455667777653
Done!