Query 039716
Match_columns 1002
No_of_seqs 739 out of 5293
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 21:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a0r_A Sensor protein; four he 100.0 2.6E-40 8.9E-45 374.1 23.2 335 217-666 3-345 (349)
2 2c2a_A Sensor histidine kinase 100.0 1.5E-37 5.2E-42 337.4 27.2 221 371-667 21-249 (258)
3 4ew8_A Sensor protein DIVL; si 100.0 1.8E-32 6.1E-37 298.6 27.3 215 371-668 41-258 (268)
4 3jz3_A Sensor protein QSEC; he 100.0 4E-34 1.4E-38 302.0 11.6 213 371-667 3-218 (222)
5 1gkz_A [3-methyl-2-oxobutanoat 100.0 1E-32 3.5E-37 318.1 22.0 219 369-667 120-374 (388)
6 2btz_A Pyruvate dehydrogenase 100.0 1.5E-32 5.2E-37 317.3 22.5 218 372-667 97-351 (394)
7 2e0a_A Pyruvate dehydrogenase 100.0 4.1E-32 1.4E-36 313.7 24.3 217 372-667 97-351 (394)
8 2q8g_A [pyruvate dehydrogenase 100.0 1.8E-31 6E-36 309.7 24.0 217 373-667 108-364 (407)
9 4fpp_A Phosphotransferase; fou 100.0 1.9E-31 6.6E-36 288.3 18.5 195 373-665 49-247 (247)
10 3d36_A Sporulation kinase B; G 100.0 3.9E-31 1.3E-35 283.3 20.1 211 370-668 14-227 (244)
11 1y8o_A [pyruvate dehydrogenase 100.0 4.3E-31 1.5E-35 307.5 21.7 217 372-667 120-375 (419)
12 3to5_A CHEY homolog; alpha(5)b 99.9 1E-25 3.5E-30 219.5 17.3 120 858-1001 11-131 (134)
13 1b3q_A Protein (chemotaxis pro 99.9 7.4E-26 2.5E-30 259.7 15.9 197 372-667 12-249 (379)
14 3ehh_A Sensor kinase (YOCF pro 99.9 1.6E-23 5.6E-28 220.6 21.9 186 371-666 29-216 (218)
15 3mm4_A Histidine kinase homolo 99.9 3.5E-24 1.2E-28 224.7 16.5 120 858-1001 60-194 (206)
16 1ysr_A Sensor-type histidine k 99.9 2.2E-23 7.4E-28 206.6 16.8 146 439-666 4-149 (150)
17 1id0_A PHOQ histidine kinase; 99.9 1.7E-22 5.9E-27 200.2 17.8 144 441-667 2-146 (152)
18 1bxd_A ENVZ(290-450), protein 99.9 9.1E-23 3.1E-27 204.7 15.3 148 438-668 5-152 (161)
19 3sl2_A Sensor histidine kinase 99.9 1.6E-22 5.4E-27 206.4 15.6 152 442-668 2-154 (177)
20 1r62_A Nitrogen regulation pro 99.9 2.4E-22 8.3E-27 200.5 13.2 156 437-666 2-159 (160)
21 3a0y_A Sensor protein; ATP-LID 99.9 1.4E-21 4.7E-26 193.4 17.1 144 439-666 2-148 (152)
22 2lpm_A Two-component response 99.9 2.7E-23 9.1E-28 199.1 3.5 113 858-1001 7-120 (123)
23 1i58_A Chemotaxis protein CHEA 99.8 3E-21 1E-25 199.0 12.6 148 441-665 3-188 (189)
24 3gl9_A Response regulator; bet 99.8 2.8E-20 9.6E-25 177.4 17.3 118 860-1001 3-120 (122)
25 2r25_B Osmosensing histidine p 99.8 1.7E-19 5.7E-24 174.7 17.7 117 860-1001 3-125 (133)
26 3t6k_A Response regulator rece 99.8 1.7E-19 5.7E-24 175.4 16.9 119 859-1001 4-122 (136)
27 3f6p_A Transcriptional regulat 99.8 2.6E-19 8.8E-24 170.0 16.2 115 860-1001 3-117 (120)
28 3h1g_A Chemotaxis protein CHEY 99.8 4E-19 1.4E-23 170.8 17.2 120 858-1001 4-125 (129)
29 3n0r_A Response regulator; sig 99.8 2.9E-20 1E-24 204.9 9.3 114 859-1001 160-275 (286)
30 3m6m_D Sensory/regulatory prot 99.8 5.8E-19 2E-23 173.2 16.8 122 858-1001 13-134 (143)
31 3rqi_A Response regulator prot 99.8 2.6E-19 9E-24 183.7 12.5 117 858-1000 6-122 (184)
32 3ehg_A Sensor kinase (YOCF pro 99.8 1.4E-18 4.8E-23 167.6 15.6 125 443-666 2-126 (128)
33 2ayx_A Sensor kinase protein R 99.8 1.3E-18 4.6E-23 188.3 16.4 119 857-1001 127-245 (254)
34 1dbw_A Transcriptional regulat 99.8 4.9E-18 1.7E-22 162.1 17.7 117 859-1001 3-119 (126)
35 1srr_A SPO0F, sporulation resp 99.8 3.7E-18 1.3E-22 162.4 15.9 116 860-1001 4-119 (124)
36 2pl1_A Transcriptional regulat 99.8 7.9E-18 2.7E-22 159.0 17.4 114 861-1000 2-115 (121)
37 3gt7_A Sensor protein; structu 99.8 5.2E-18 1.8E-22 168.5 17.0 120 858-1001 6-125 (154)
38 3crn_A Response regulator rece 99.8 5E-18 1.7E-22 163.8 16.3 116 860-1001 4-119 (132)
39 3zxo_A Redox sensor histidine 99.8 2.4E-18 8.3E-23 165.6 14.0 125 441-666 3-128 (129)
40 3luf_A Two-component system re 99.8 2.9E-18 9.8E-23 186.3 15.8 119 859-1001 124-243 (259)
41 3eod_A Protein HNR; response r 99.8 5.8E-18 2E-22 162.4 15.6 118 858-1001 6-124 (130)
42 1mb3_A Cell division response 99.8 4.6E-18 1.6E-22 161.4 14.7 118 860-1001 2-119 (124)
43 1tmy_A CHEY protein, TMY; chem 99.8 6.7E-18 2.3E-22 159.4 15.6 116 860-1001 3-119 (120)
44 1jbe_A Chemotaxis protein CHEY 99.8 1.2E-17 4.1E-22 159.6 17.6 119 859-1001 4-123 (128)
45 3hv2_A Response regulator/HD d 99.8 9.8E-18 3.3E-22 166.1 17.2 119 857-1001 12-131 (153)
46 3r0j_A Possible two component 99.8 7E-18 2.4E-22 181.9 16.9 118 858-1001 22-139 (250)
47 4e7p_A Response regulator; DNA 99.8 9.2E-18 3.1E-22 165.7 16.2 119 857-1001 18-138 (150)
48 1zgz_A Torcad operon transcrip 99.8 1.7E-17 5.9E-22 157.1 17.1 115 860-1001 3-117 (122)
49 3i42_A Response regulator rece 99.8 4.3E-18 1.5E-22 162.6 13.0 118 859-1001 3-120 (127)
50 3hdv_A Response regulator; PSI 99.8 1.7E-17 5.9E-22 160.4 17.3 119 858-1001 6-125 (136)
51 1xhf_A DYE resistance, aerobic 99.8 1.5E-17 5E-22 157.8 16.3 115 859-1000 3-117 (123)
52 1p6q_A CHEY2; chemotaxis, sign 99.8 9.4E-18 3.2E-22 160.6 14.8 119 859-1001 6-125 (129)
53 3lua_A Response regulator rece 99.8 5.1E-18 1.7E-22 165.2 13.2 119 859-1001 4-125 (140)
54 3hzh_A Chemotaxis response reg 99.7 1.1E-17 3.6E-22 166.8 15.7 118 858-1001 35-155 (157)
55 3heb_A Response regulator rece 99.7 1.8E-17 6E-22 163.9 17.2 118 859-1000 4-132 (152)
56 2a9o_A Response regulator; ess 99.7 1.6E-17 5.3E-22 156.6 15.5 115 860-1001 2-116 (120)
57 3kto_A Response regulator rece 99.7 4.3E-18 1.5E-22 165.1 12.0 117 859-1001 6-124 (136)
58 1i3c_A Response regulator RCP1 99.7 2E-17 6.9E-22 163.2 16.9 118 859-1000 8-134 (149)
59 3grc_A Sensor protein, kinase; 99.7 6.9E-18 2.4E-22 164.1 13.2 119 859-1001 6-125 (140)
60 3b2n_A Uncharacterized protein 99.7 1.7E-17 5.9E-22 160.2 15.9 116 860-1001 4-121 (133)
61 4dad_A Putative pilus assembly 99.7 4.2E-18 1.4E-22 167.0 11.6 119 857-1001 18-139 (146)
62 3cfy_A Putative LUXO repressor 99.7 1.2E-17 4E-22 162.5 14.5 116 860-1001 5-120 (137)
63 3hdg_A Uncharacterized protein 99.7 1.3E-17 4.4E-22 161.5 14.6 118 858-1001 6-123 (137)
64 2qzj_A Two-component response 99.7 1.9E-17 6.5E-22 160.8 15.5 115 859-1000 4-118 (136)
65 3ilh_A Two component response 99.7 2.6E-17 9E-22 160.7 16.6 122 858-1001 8-137 (146)
66 3snk_A Response regulator CHEY 99.7 1.7E-18 5.8E-23 167.6 8.0 118 858-1001 13-131 (135)
67 3kht_A Response regulator; PSI 99.7 2.6E-17 8.8E-22 161.0 16.1 119 859-1001 5-126 (144)
68 3jte_A Response regulator rece 99.7 3.7E-17 1.3E-21 159.5 16.9 117 859-1001 3-121 (143)
69 3dzd_A Transcriptional regulat 99.7 5.6E-18 1.9E-22 193.2 12.1 115 861-1001 2-116 (368)
70 1k68_A Phytochrome response re 99.7 4.8E-17 1.6E-21 157.2 16.8 119 859-1001 2-129 (140)
71 3nhm_A Response regulator; pro 99.7 2.4E-17 8.2E-22 158.6 14.5 117 859-1001 4-120 (133)
72 3eul_A Possible nitrate/nitrit 99.7 3.6E-17 1.2E-21 161.6 16.0 119 857-1001 13-133 (152)
73 3c3m_A Response regulator rece 99.7 3.7E-17 1.3E-21 158.9 15.8 118 860-1001 4-121 (138)
74 3f6c_A Positive transcription 99.7 1E-17 3.4E-22 161.5 11.5 116 860-1001 2-118 (134)
75 1mvo_A PHOP response regulator 99.7 3.9E-17 1.3E-21 157.8 15.1 115 860-1000 4-118 (136)
76 3zxq_A Hypoxia sensor histidin 99.7 2.9E-17 1E-21 156.9 13.9 122 444-666 2-123 (124)
77 1k66_A Phytochrome response re 99.7 6.9E-17 2.3E-21 158.1 16.8 119 858-1000 5-135 (149)
78 3lte_A Response regulator; str 99.7 7.1E-17 2.4E-21 155.1 16.6 119 858-1001 5-123 (132)
79 1dcf_A ETR1 protein; beta-alph 99.7 5.9E-17 2E-21 156.8 16.0 122 858-1001 6-127 (136)
80 3a10_A Response regulator; pho 99.7 2.6E-17 8.8E-22 154.4 13.0 114 860-1001 2-115 (116)
81 1zh2_A KDP operon transcriptio 99.7 3.9E-17 1.3E-21 154.1 14.2 114 860-1000 2-115 (121)
82 1dz3_A Stage 0 sporulation pro 99.7 2.9E-17 9.9E-22 157.7 13.5 117 860-1001 3-121 (130)
83 3h5i_A Response regulator/sens 99.7 1.8E-17 6.2E-22 161.5 12.0 116 859-1001 5-122 (140)
84 3cnb_A DNA-binding response re 99.7 1.1E-16 3.7E-21 155.7 17.4 120 858-1001 7-128 (143)
85 1yio_A Response regulatory pro 99.7 2.3E-17 7.8E-22 172.2 13.1 116 859-1000 4-119 (208)
86 2jba_A Phosphate regulon trans 99.7 1.7E-17 5.9E-22 158.1 10.0 117 860-1000 3-119 (127)
87 3q9s_A DNA-binding response re 99.7 5.3E-17 1.8E-21 175.2 14.9 117 858-1001 36-152 (249)
88 1a04_A Nitrate/nitrite respons 99.7 7.1E-17 2.4E-21 169.4 15.5 116 859-1000 5-122 (215)
89 2zay_A Response regulator rece 99.7 7.1E-17 2.4E-21 158.3 14.3 120 858-1001 7-126 (147)
90 2qxy_A Response regulator; reg 99.7 9.6E-17 3.3E-21 156.3 14.3 116 859-1001 4-119 (142)
91 2rjn_A Response regulator rece 99.7 1.7E-16 5.6E-21 157.2 16.0 118 858-1001 6-124 (154)
92 3cu5_A Two component transcrip 99.7 5.4E-17 1.9E-21 158.6 11.8 115 860-1000 3-120 (141)
93 3eq2_A Probable two-component 99.7 4E-17 1.4E-21 188.1 12.8 116 859-1000 5-121 (394)
94 2jk1_A HUPR, hydrogenase trans 99.7 1.4E-16 4.9E-21 154.8 14.6 114 860-1000 2-116 (139)
95 3n53_A Response regulator rece 99.7 4.3E-17 1.5E-21 158.6 10.7 118 859-1001 3-120 (140)
96 1kgs_A DRRD, DNA binding respo 99.7 1.3E-16 4.4E-21 168.4 15.0 115 860-1000 3-117 (225)
97 3kcn_A Adenylate cyclase homol 99.7 1.9E-16 6.4E-21 156.4 15.1 116 859-1001 4-121 (151)
98 1s8n_A Putative antiterminator 99.7 8.4E-17 2.9E-21 167.7 13.2 115 859-1000 13-128 (205)
99 3cg0_A Response regulator rece 99.7 1.9E-16 6.5E-21 153.5 14.8 117 858-1001 8-126 (140)
100 3cg4_A Response regulator rece 99.7 6.8E-17 2.3E-21 157.3 11.6 120 858-1001 6-125 (142)
101 1qkk_A DCTD, C4-dicarboxylate 99.7 1.7E-16 6E-21 157.2 14.6 117 859-1001 3-119 (155)
102 2qr3_A Two-component system re 99.7 2E-16 6.8E-21 153.4 14.4 117 859-1001 3-124 (140)
103 2qvg_A Two component response 99.7 3.3E-16 1.1E-20 152.5 16.0 118 859-1000 7-132 (143)
104 1w25_A Stalked-cell differenti 99.7 1.5E-16 5.1E-21 187.0 16.0 117 860-1000 2-118 (459)
105 3cz5_A Two-component response 99.7 3.6E-16 1.2E-20 154.6 15.5 117 859-1001 5-123 (153)
106 1ny5_A Transcriptional regulat 99.7 1.6E-16 5.6E-21 182.4 14.8 115 861-1001 2-116 (387)
107 3eqz_A Response regulator; str 99.7 9.8E-17 3.3E-21 154.4 10.9 116 859-1001 3-123 (135)
108 2pln_A HP1043, response regula 99.7 7.3E-16 2.5E-20 149.2 16.4 114 857-1001 16-131 (137)
109 1ys7_A Transcriptional regulat 99.7 1.7E-16 5.7E-21 168.5 12.8 117 859-1001 7-123 (233)
110 1mu5_A Type II DNA topoisomera 99.7 1.6E-16 5.3E-21 185.4 13.6 117 478-667 26-149 (471)
111 2zbk_B Type 2 DNA topoisomeras 99.7 1.3E-16 4.5E-21 187.9 13.1 77 591-667 69-148 (530)
112 3kyj_B CHEY6 protein, putative 99.7 1.1E-16 3.9E-21 156.7 10.4 109 857-992 11-124 (145)
113 2gkg_A Response regulator homo 99.7 3.5E-16 1.2E-20 148.5 13.2 117 860-1001 6-123 (127)
114 1th8_A Anti-sigma F factor; SP 99.7 3.4E-16 1.2E-20 154.1 12.3 102 480-667 35-140 (145)
115 2gwr_A DNA-binding response re 99.7 4.7E-16 1.6E-20 166.1 13.6 115 860-1001 6-120 (238)
116 2qv0_A Protein MRKE; structura 99.7 1.3E-15 4.5E-20 148.4 15.5 115 859-1001 9-125 (143)
117 2j48_A Two-component sensor ki 99.6 8.9E-16 3E-20 143.3 13.0 115 860-1001 2-116 (119)
118 3c97_A Signal transduction his 99.6 4.8E-16 1.6E-20 151.2 11.6 118 860-1001 11-128 (140)
119 3bre_A Probable two-component 99.6 4E-16 1.4E-20 177.0 12.6 118 859-1000 18-136 (358)
120 2oqr_A Sensory transduction pr 99.6 5.8E-16 2E-20 164.1 12.9 115 860-1001 5-119 (230)
121 3t8y_A CHEB, chemotaxis respon 99.6 1.3E-15 4.4E-20 153.0 14.5 117 858-1001 24-153 (164)
122 2rdm_A Response regulator rece 99.6 1.6E-15 5.4E-20 145.4 14.2 115 859-1001 5-121 (132)
123 2qsj_A DNA-binding response re 99.6 5.7E-16 2E-20 153.2 11.4 117 859-1001 3-122 (154)
124 2b4a_A BH3024; flavodoxin-like 99.6 6E-16 2.1E-20 150.0 11.1 115 857-1001 13-129 (138)
125 1p2f_A Response regulator; DRR 99.6 1.4E-15 4.8E-20 160.1 13.2 113 860-1001 3-115 (220)
126 3c3w_A Two component transcrip 99.6 1.8E-16 6E-21 168.1 6.0 115 860-1000 2-118 (225)
127 3sy8_A ROCR; TIM barrel phosph 99.6 5.3E-16 1.8E-20 179.2 9.9 116 860-1001 4-126 (400)
128 3klo_A Transcriptional regulat 99.6 2.3E-16 7.9E-21 167.0 6.2 118 859-1001 7-127 (225)
129 1qo0_D AMIR; binding protein, 99.6 1.2E-15 4.2E-20 157.6 9.6 111 859-1000 12-122 (196)
130 1dc7_A NTRC, nitrogen regulati 99.6 4.2E-17 1.4E-21 154.3 -1.6 115 860-1000 4-118 (124)
131 2hqr_A Putative transcriptiona 99.6 8.1E-15 2.8E-19 154.6 14.8 111 861-1001 2-113 (223)
132 3luf_A Two-component system re 99.6 3E-15 1E-19 162.5 9.5 102 860-990 5-107 (259)
133 1a2o_A CHEB methylesterase; ba 99.5 3.6E-14 1.2E-18 160.4 14.1 114 860-1000 4-130 (349)
134 2vyc_A Biodegradative arginine 99.5 6.1E-14 2.1E-18 173.9 8.8 113 861-999 2-129 (755)
135 2q2e_B Type 2 DNA topoisomeras 99.4 1.8E-13 6.1E-18 163.4 9.6 114 478-666 31-154 (621)
136 3p7n_A Sensor histidine kinase 99.1 2.8E-10 9.6E-15 122.2 11.9 176 214-396 55-238 (258)
137 1w25_A Stalked-cell differenti 99.1 1.4E-09 4.7E-14 127.5 16.2 115 859-999 152-266 (459)
138 3k3c_A Protein RV1364C/MT1410; 99.0 6.3E-09 2.1E-13 101.8 15.6 122 220-343 15-145 (158)
139 3mxq_A Sensor protein; PSI2, M 98.9 2.2E-09 7.5E-14 106.5 9.5 122 215-337 15-151 (152)
140 3cwo_X Beta/alpha-barrel prote 98.9 4.4E-10 1.5E-14 118.8 3.8 91 884-1000 6-98 (237)
141 3mr0_A Sensory box histidine k 98.9 1.3E-08 4.4E-13 98.5 13.2 131 215-345 2-137 (142)
142 2gj3_A Nitrogen fixation regul 98.8 9.2E-09 3.2E-13 96.1 9.1 113 221-333 4-119 (120)
143 3ue6_A Aureochrome1; PAS/LOV d 98.8 9.2E-09 3.2E-13 100.9 9.1 124 213-336 26-155 (166)
144 4hia_A LOV protein; PAS, HTH, 98.8 1E-08 3.6E-13 102.3 9.4 119 221-339 6-130 (176)
145 2pr5_A Blue-light photorecepto 98.8 5.1E-08 1.7E-12 92.6 12.7 119 226-346 3-127 (132)
146 3sw1_A Sensory box protein; li 98.8 2.7E-08 9.1E-13 97.3 11.0 126 221-346 24-155 (162)
147 3kx0_X Uncharacterized protein 98.7 2.4E-08 8.1E-13 101.4 10.1 119 219-339 34-161 (185)
148 3nja_A Probable ggdef family p 98.7 2.9E-08 9.9E-13 91.5 8.7 118 217-334 2-124 (125)
149 3f1p_B ARYL hydrocarbon recept 98.7 3.1E-08 1.1E-12 92.3 8.0 112 223-334 3-119 (121)
150 3luq_A Sensor protein; PAS, hi 98.7 7.8E-08 2.7E-12 87.1 10.4 110 221-331 2-114 (114)
151 3t50_A Blue-light-activated hi 98.6 5.4E-08 1.8E-12 90.9 8.5 114 227-340 2-121 (128)
152 3lyx_A Sensory BOX/ggdef domai 98.6 1.4E-07 4.8E-12 85.6 9.5 115 220-334 5-122 (124)
153 3vol_A Aerotaxis transducer AE 98.6 3.8E-07 1.3E-11 96.8 13.4 114 222-345 22-150 (233)
154 2z6d_A Phototropin-2; PAS-fold 98.5 2.2E-07 7.7E-12 84.8 9.0 119 219-337 3-127 (130)
155 3eeh_A Putative light and redo 98.5 3.1E-07 1.1E-11 83.8 8.4 117 214-331 3-125 (125)
156 4eet_B Phototropin-2; LOV, blu 98.5 2.8E-07 9.7E-12 83.3 8.0 107 227-333 2-114 (115)
157 1d06_A Nitrogen fixation regul 98.5 7.3E-07 2.5E-11 84.2 11.1 120 210-331 4-130 (130)
158 2v0u_A NPH1-1, LOV2; kinase, t 98.5 4E-07 1.4E-11 85.3 9.1 112 224-335 4-121 (146)
159 3f1p_A Endothelial PAS domain- 98.5 1.6E-07 5.3E-12 86.8 6.1 105 230-334 7-115 (117)
160 3icy_A Sensor protein; sensory 98.4 7.4E-07 2.5E-11 81.4 10.4 112 220-331 2-118 (118)
161 1v9y_A Heme PAS sensor protein 98.4 6.2E-07 2.1E-11 87.3 8.6 130 209-340 27-163 (167)
162 1b63_A MUTL; DNA mismatch repa 98.4 4.9E-07 1.7E-11 101.1 8.1 58 593-655 55-118 (333)
163 2qkp_A Uncharacterized protein 98.3 2.4E-06 8.2E-11 84.3 12.0 112 222-336 19-136 (151)
164 1kij_A DNA gyrase subunit B; t 98.3 3.6E-07 1.2E-11 104.1 6.6 51 593-643 65-127 (390)
165 3mqq_A Transcriptional regulat 98.3 7E-07 2.4E-11 82.9 6.8 111 223-335 4-118 (120)
166 2wkq_A NPH1-1, RAS-related C3 98.3 2E-06 6.8E-11 95.6 10.9 114 226-339 15-134 (332)
167 3ewk_A Sensor protein; PAS dom 98.3 3.1E-06 1.1E-10 88.7 11.4 106 235-340 2-110 (227)
168 1h7s_A PMS1 protein homolog 2; 98.3 1.6E-06 5.4E-11 97.9 9.6 57 593-654 65-127 (365)
169 1n9l_A PHOT-LOV1, putative blu 98.3 2.8E-06 9.4E-11 78.0 9.6 102 231-332 2-109 (109)
170 4hi4_A Aerotaxis transducer AE 98.3 6.1E-06 2.1E-10 77.2 12.1 102 222-333 5-121 (121)
171 3na3_A DNA mismatch repair pro 98.2 2E-06 6.9E-11 95.9 8.8 58 593-655 59-122 (348)
172 3fc7_A HTR-like protein, senso 98.2 1.4E-06 4.9E-11 80.5 6.4 105 220-331 17-125 (125)
173 3ke6_A Protein RV1364C/MT1410; 98.2 2.2E-06 7.7E-11 98.4 9.3 55 591-667 333-387 (399)
174 2vv6_A FIXL, sensor protein FI 98.2 5.5E-06 1.9E-10 76.7 9.7 109 230-340 1-116 (119)
175 2r78_A Sensor protein; sensory 98.2 6.8E-06 2.3E-10 76.2 10.2 109 217-331 6-117 (117)
176 3mjq_A Uncharacterized protein 98.2 2.2E-06 7.4E-11 79.1 6.5 113 225-340 2-117 (126)
177 3h9w_A Diguanylate cyclase wit 98.1 4.7E-06 1.6E-10 76.5 7.6 107 231-337 2-113 (115)
178 3ewk_A Sensor protein; PAS dom 98.1 2.3E-05 8E-10 81.9 12.6 106 224-329 113-227 (227)
179 3olo_A Two-component sensor hi 98.0 1.1E-05 3.7E-10 73.4 8.4 107 218-331 9-118 (118)
180 3fg8_A Uncharacterized protein 98.0 2.3E-06 7.7E-11 79.7 2.6 110 216-333 6-118 (118)
181 3bwl_A Sensor protein; structu 98.0 7.1E-05 2.4E-09 69.3 12.6 114 210-331 5-126 (126)
182 2kdk_A ARYL hydrocarbon recept 97.9 2.8E-05 9.6E-10 71.6 9.6 108 226-333 7-119 (121)
183 4eho_A Bacteriophytochrome, PA 97.9 5.6E-06 1.9E-10 100.8 4.9 112 223-335 519-633 (635)
184 2l0w_A Potassium voltage-gated 97.9 3.7E-05 1.3E-09 71.0 9.3 107 226-332 23-137 (138)
185 3cax_A Uncharacterized protein 97.9 0.00011 3.7E-09 83.4 14.8 109 222-335 239-349 (369)
186 3zcc_A HAMP, osmolarity sensor 97.9 4.2E-05 1.4E-09 70.2 9.3 54 371-429 61-114 (114)
187 3h4l_A DNA mismatch repair pro 97.9 1.1E-05 3.8E-10 90.7 6.3 58 592-654 55-118 (367)
188 3b33_A Sensor protein; structu 97.6 0.00019 6.4E-09 65.3 9.7 103 224-331 9-115 (115)
189 2wer_A ATP-dependent molecular 97.6 2.2E-05 7.4E-10 82.5 2.8 48 593-640 74-131 (220)
190 1byw_A Protein (human ERG pota 97.6 0.0002 7E-09 62.6 8.7 99 234-332 3-109 (110)
191 4f3l_A Mclock, circadian locom 97.5 0.00016 5.3E-09 81.8 9.4 105 232-336 251-359 (361)
192 2w0n_A Sensor protein DCUS; si 97.5 3.3E-05 1.1E-09 70.0 2.5 103 217-331 10-118 (118)
193 3d72_A Vivid PAS protein VVD; 97.5 0.00034 1.2E-08 66.8 9.3 102 227-329 31-149 (149)
194 1qy5_A Endoplasmin; GRP94, NEC 97.4 2.2E-05 7.6E-10 84.5 -0.2 48 593-640 76-138 (269)
195 1ixm_A SPO0B, protein (sporula 97.4 0.00073 2.5E-08 69.1 10.9 42 372-417 23-64 (192)
196 2ior_A Chaperone protein HTPG; 97.3 6.5E-05 2.2E-09 79.6 1.6 48 593-640 95-154 (235)
197 1yc1_A HSP 86, heat shock prot 97.2 0.00022 7.5E-09 76.6 5.5 56 593-652 116-181 (264)
198 3mfx_A Sensory BOX/ggdef famil 97.2 0.00056 1.9E-08 65.2 6.9 107 222-331 7-123 (129)
199 2jhe_A Transcription regulator 97.1 0.0002 6.8E-09 72.3 3.4 105 219-333 77-188 (190)
200 4f3l_B BMAL1B; BHLH, PAS, circ 97.1 0.00064 2.2E-08 77.5 7.7 105 230-334 276-385 (387)
201 3zrx_A AF1503 protein, osmolar 96.9 0.002 6.8E-08 58.6 7.8 55 371-430 61-115 (115)
202 2ayx_A Sensor kinase protein R 96.9 0.0011 3.8E-08 70.8 6.8 95 857-1000 9-103 (254)
203 1nwz_A PYP, photoactive yellow 96.8 0.0059 2E-07 57.7 9.9 99 225-325 20-122 (125)
204 3a0s_A Sensor protein; PAS-fol 96.7 0.0087 3E-07 50.6 10.1 92 231-329 1-96 (96)
205 1mzu_A PPR; photoactive yellow 96.7 0.0073 2.5E-07 57.3 9.8 98 226-325 26-127 (129)
206 2vlg_A Sporulation kinase A; h 96.7 0.0028 9.7E-08 58.6 6.9 90 226-318 3-95 (111)
207 1s16_A Topoisomerase IV subuni 96.5 0.0035 1.2E-07 71.2 7.3 48 594-641 65-124 (390)
208 3cwo_X Beta/alpha-barrel prote 96.3 0.0075 2.6E-07 62.7 8.2 88 887-999 127-222 (237)
209 2ykf_A Pdtas, probable sensor 95.1 0.00089 3E-08 73.8 0.0 108 227-340 175-293 (305)
210 3t0h_A Heat shock protein HSP 96.1 0.0011 3.9E-08 69.4 0.8 57 593-653 80-146 (228)
211 1ll8_A PAS kinase; PAS domain, 95.9 0.0061 2.1E-07 55.2 4.7 100 230-331 6-113 (114)
212 3peh_A Endoplasmin homolog; st 95.7 0.0041 1.4E-07 66.7 3.0 48 593-640 94-152 (281)
213 3o0i_A HSP90AA1 protein; HSP90 95.5 0.0026 8.9E-08 67.5 0.5 48 593-640 108-165 (256)
214 2gqp_A Endoplasmin; GRP94, HSP 95.5 0.0033 1.1E-07 66.4 1.2 58 593-654 80-152 (236)
215 1y4s_A Chaperone protein HTPG; 95.4 0.016 5.4E-07 68.5 6.5 72 593-664 75-181 (559)
216 3n75_A LDC, lysine decarboxyla 95.3 0.01 3.6E-07 72.5 4.7 91 872-991 19-110 (715)
217 3rty_A Period circadian protei 95.2 0.063 2.2E-06 59.7 10.4 102 231-332 153-263 (339)
218 2cg9_A ATP-dependent molecular 94.7 0.016 5.6E-07 69.6 4.1 72 593-664 74-178 (677)
219 3nmq_A Heat shock protein HSP 94.6 0.0068 2.3E-07 63.7 0.5 47 593-640 87-144 (239)
220 2ioq_A Chaperone protein HTPG; 94.6 0.014 4.7E-07 69.9 3.1 48 593-640 75-134 (624)
221 1ei1_A DNA gyrase B, GYRB; ATP 94.5 0.045 1.5E-06 62.0 7.0 48 594-641 68-127 (391)
222 2o1u_A Endoplasmin; GRP94, HSP 94.2 0.014 4.9E-07 70.0 2.1 72 593-664 93-201 (666)
223 2yxb_A Coenzyme B12-dependent 93.7 0.79 2.7E-05 45.1 13.3 117 858-1000 17-142 (161)
224 3fv5_A DNA topoisomerase 4 sub 93.6 0.095 3.3E-06 53.7 6.7 47 594-640 51-109 (201)
225 3cwv_A DNA gyrase, B subunit, 92.7 0.17 5.8E-06 56.8 7.4 20 481-500 27-46 (369)
226 4dj3_A Period circadian protei 92.6 0.37 1.3E-05 53.0 9.9 96 233-328 175-277 (317)
227 3gdi_A Period circadian protei 91.7 0.53 1.8E-05 51.5 9.8 99 233-331 166-270 (309)
228 3q7r_A Transcriptional regulat 91.6 0.31 1.1E-05 43.1 6.1 102 861-1001 14-116 (121)
229 4dj2_A Period circadian protei 91.5 0.48 1.6E-05 52.2 9.1 100 232-331 176-281 (320)
230 4duh_A DNA gyrase subunit B; s 90.1 0.61 2.1E-05 48.4 7.8 65 594-663 69-145 (220)
231 1ccw_A Protein (glutamate muta 89.6 3.2 0.00011 39.4 12.0 116 860-1000 4-133 (137)
232 1wv2_A Thiazole moeity, thiazo 87.4 3.2 0.00011 43.6 11.0 89 867-985 120-215 (265)
233 4emv_A DNA topoisomerase IV, B 87.3 1 3.5E-05 46.9 7.3 65 594-663 74-149 (226)
234 1zxm_A TOPO IIA ATPase, DNA to 87.1 2.1 7.1E-05 48.5 10.2 48 593-640 87-146 (400)
235 3ied_A Heat shock protein; HSP 85.8 0.27 9.1E-06 51.8 1.8 56 593-652 131-197 (272)
236 3ttz_A DNA gyrase subunit B; p 83.7 2 6.8E-05 43.7 7.3 29 481-509 28-59 (198)
237 4f3l_A Mclock, circadian locom 83.2 1 3.6E-05 50.2 5.4 57 221-277 85-144 (361)
238 1oj5_A Steroid receptor coacti 81.1 2.6 8.7E-05 39.8 6.2 99 231-329 6-114 (132)
239 2i2x_B MTAC, methyltransferase 80.7 16 0.00054 38.5 13.2 101 858-987 122-231 (258)
240 3q58_A N-acetylmannosamine-6-p 79.5 12 0.00041 38.8 11.5 83 874-985 120-209 (229)
241 3ezx_A MMCP 1, monomethylamine 78.8 8.6 0.00029 39.5 10.1 101 858-985 91-202 (215)
242 1y80_A Predicted cobalamin bin 78.1 14 0.00046 37.6 11.4 100 859-985 88-196 (210)
243 2xij_A Methylmalonyl-COA mutas 77.1 18 0.0006 44.1 13.5 117 858-1000 603-728 (762)
244 2htm_A Thiazole biosynthesis p 77.1 4.2 0.00014 42.9 7.1 82 876-985 117-206 (268)
245 1pvg_A DNA topoisomerase II; G 75.0 12 0.00042 42.3 10.8 67 594-664 100-179 (418)
246 4f3l_B BMAL1B; BHLH, PAS, circ 74.4 2.6 9.1E-05 47.4 5.2 55 222-276 86-144 (387)
247 1req_A Methylmalonyl-COA mutas 73.7 19 0.00064 43.6 12.4 114 858-997 595-717 (727)
248 3igs_A N-acetylmannosamine-6-p 73.6 21 0.00071 37.0 11.5 84 873-985 119-209 (232)
249 3lnu_A Topoisomerase IV subuni 68.5 8.8 0.0003 43.3 7.6 48 594-641 84-143 (408)
250 1geq_A Tryptophan synthase alp 66.5 11 0.00037 39.3 7.5 37 957-993 80-122 (248)
251 3f4w_A Putative hexulose 6 pho 61.0 35 0.0012 34.3 10.0 94 862-985 80-186 (211)
252 3vnd_A TSA, tryptophan synthas 60.7 11 0.00038 40.0 6.2 41 956-996 94-140 (267)
253 3qja_A IGPS, indole-3-glycerol 59.0 64 0.0022 34.2 11.8 85 874-985 153-241 (272)
254 3rty_A Period circadian protei 58.1 30 0.001 38.0 9.4 52 234-289 5-60 (339)
255 2ekc_A AQ_1548, tryptophan syn 57.6 28 0.00096 36.7 8.8 42 957-998 94-141 (262)
256 1qop_A Tryptophan synthase alp 54.3 16 0.00056 38.6 6.3 42 956-997 93-140 (268)
257 1xrs_B D-lysine 5,6-aminomutas 54.1 76 0.0026 33.4 11.2 112 859-997 120-252 (262)
258 3kp1_A D-ornithine aminomutase 53.2 66 0.0023 38.1 11.2 112 859-997 602-729 (763)
259 3lif_A Putative diguanylate cy 52.7 1.9E+02 0.0067 29.0 18.9 92 221-331 57-152 (254)
260 3rht_A (gatase1)-like protein; 51.6 3.7 0.00013 43.5 0.6 70 859-929 4-76 (259)
261 2w6r_A Imidazole glycerol phos 48.6 68 0.0023 33.4 10.0 77 893-997 159-246 (266)
262 1ka9_F Imidazole glycerol phos 48.4 1.1E+02 0.0038 31.3 11.6 79 893-999 155-244 (252)
263 1geq_A Tryptophan synthase alp 47.2 85 0.0029 32.2 10.4 86 871-985 121-219 (248)
264 3ffs_A Inosine-5-monophosphate 43.1 2.4E+02 0.0083 31.5 13.8 100 859-984 156-273 (400)
265 3tsm_A IGPS, indole-3-glycerol 43.1 1.6E+02 0.0054 31.1 11.6 93 873-992 159-260 (272)
266 3gdi_A Period circadian protei 42.7 17 0.00059 39.4 4.2 51 226-276 19-73 (309)
267 1thf_D HISF protein; thermophI 41.9 92 0.0031 32.0 9.7 81 892-999 153-243 (253)
268 3bul_A Methionine synthase; tr 40.4 83 0.0028 37.1 9.8 101 859-985 98-210 (579)
269 2v82_A 2-dehydro-3-deoxy-6-pho 40.3 49 0.0017 33.2 7.1 78 877-985 95-175 (212)
270 3o63_A Probable thiamine-phosp 40.3 89 0.003 32.4 9.1 71 888-985 141-218 (243)
271 1vzw_A Phosphoribosyl isomeras 38.2 91 0.0031 31.9 8.9 79 891-997 147-239 (244)
272 1ujp_A Tryptophan synthase alp 38.1 34 0.0012 36.3 5.6 80 893-1000 33-140 (271)
273 1yad_A Regulatory protein TENI 37.5 1.1E+02 0.0039 30.6 9.4 69 888-985 116-191 (221)
274 1x1o_A Nicotinate-nucleotide p 36.2 98 0.0033 33.0 8.7 90 862-983 169-265 (286)
275 2y88_A Phosphoribosyl isomeras 35.5 72 0.0024 32.7 7.5 79 892-997 151-242 (244)
276 4fo4_A Inosine 5'-monophosphat 34.9 2.9E+02 0.0099 30.4 12.6 100 860-985 121-239 (366)
277 3nav_A Tryptophan synthase alp 34.6 31 0.0011 36.6 4.5 39 956-994 96-140 (271)
278 4dj3_A Period circadian protei 34.5 25 0.00084 38.3 3.8 51 226-276 30-84 (317)
279 1xi3_A Thiamine phosphate pyro 34.3 1.2E+02 0.0042 30.0 9.0 68 888-984 114-188 (215)
280 4gfh_A DNA topoisomerase 2; to 33.9 76 0.0026 40.8 8.6 48 594-641 95-154 (1177)
281 1qo2_A Molecule: N-((5-phospho 33.7 1.7E+02 0.0058 29.8 10.1 79 891-997 145-240 (241)
282 1xm3_A Thiazole biosynthesis p 33.5 79 0.0027 33.2 7.5 74 883-985 126-206 (264)
283 1rd5_A Tryptophan synthase alp 33.1 77 0.0026 33.0 7.4 41 956-997 93-136 (262)
284 1ka9_F Imidazole glycerol phos 32.6 1.3E+02 0.0045 30.8 9.1 29 957-985 75-103 (252)
285 2wvr_A Geminin; DNA replicatio 32.2 1.4E+02 0.0047 29.8 8.2 67 166-232 94-163 (209)
286 1h5y_A HISF; histidine biosynt 31.3 2.2E+02 0.0076 28.7 10.6 81 892-999 156-246 (253)
287 1ep3_A Dihydroorotate dehydrog 31.2 2E+02 0.0067 30.5 10.4 104 870-1000 151-290 (311)
288 3ghg_A Fibrinogen alpha chain; 30.4 1.5E+02 0.0052 33.9 9.2 50 69-118 45-94 (562)
289 4dj2_A Period circadian protei 30.2 29 0.001 37.8 3.5 49 226-274 30-82 (320)
290 2xxa_A Signal recognition part 29.6 70 0.0024 36.3 6.7 56 859-916 129-194 (433)
291 3khj_A Inosine-5-monophosphate 28.7 2.1E+02 0.0072 31.5 10.2 91 869-985 131-235 (361)
292 3ceu_A Thiamine phosphate pyro 28.7 76 0.0026 31.9 6.2 70 887-984 93-170 (210)
293 1tqj_A Ribulose-phosphate 3-ep 28.6 64 0.0022 33.1 5.6 70 891-988 18-94 (230)
294 3kts_A Glycerol uptake operon 28.6 56 0.0019 32.7 4.9 61 894-985 118-178 (192)
295 3l4e_A Uncharacterized peptida 28.2 2.2E+02 0.0077 28.5 9.6 63 859-927 27-99 (206)
296 2tps_A Protein (thiamin phosph 28.0 1.7E+02 0.0057 29.4 8.7 69 889-985 123-199 (227)
297 2w6r_A Imidazole glycerol phos 27.8 1.3E+02 0.0046 31.0 8.1 41 957-997 74-120 (266)
298 2gjl_A Hypothetical protein PA 27.5 3.5E+02 0.012 28.9 11.7 81 877-985 112-200 (328)
299 2oo3_A Protein involved in cat 27.4 40 0.0014 36.0 3.8 67 860-926 114-183 (283)
300 3ajx_A 3-hexulose-6-phosphate 26.7 29 0.001 34.7 2.5 34 957-990 53-88 (207)
301 3bo9_A Putative nitroalkan dio 26.6 2.2E+02 0.0075 30.7 9.8 81 877-985 118-204 (326)
302 3dr5_A Putative O-methyltransf 26.2 98 0.0034 31.3 6.5 66 859-926 81-150 (221)
303 1h1y_A D-ribulose-5-phosphate 26.1 1.6E+02 0.0055 29.8 8.2 82 877-985 107-200 (228)
304 4e38_A Keto-hydroxyglutarate-a 25.9 2.8E+02 0.0097 28.4 9.9 102 863-997 18-123 (232)
305 1h5y_A HISF; histidine biosynt 25.8 2.7E+02 0.0093 28.0 10.0 68 890-984 33-104 (253)
306 3ovp_A Ribulose-phosphate 3-ep 25.8 79 0.0027 32.5 5.7 83 875-985 104-196 (228)
307 2z6i_A Trans-2-enoyl-ACP reduc 25.4 2.5E+02 0.0087 30.2 10.1 79 878-984 105-189 (332)
308 1eep_A Inosine 5'-monophosphat 24.7 3.2E+02 0.011 30.3 11.0 92 869-985 179-284 (404)
309 2lci_A Protein OR36; structura 24.7 1.6E+02 0.0055 25.4 6.3 28 861-888 53-80 (134)
310 3l0g_A Nicotinate-nucleotide p 23.6 1.3E+02 0.0044 32.3 6.8 67 886-984 211-277 (300)
311 3fkq_A NTRC-like two-domain pr 23.4 1.2E+02 0.0041 33.4 7.0 58 858-915 20-80 (373)
312 2v5j_A 2,4-dihydroxyhept-2-ENE 23.3 6.7E+02 0.023 26.3 12.8 98 875-998 30-131 (287)
313 3c3y_A Pfomt, O-methyltransfer 23.2 2.1E+02 0.0071 29.0 8.4 67 859-927 95-169 (237)
314 2zxx_A Geminin; coiled-coil, c 23.0 2.2E+02 0.0075 24.1 6.7 48 167-214 14-64 (79)
315 1y0e_A Putative N-acetylmannos 22.9 2.6E+02 0.0089 27.8 9.0 85 873-985 108-203 (223)
316 4e5v_A Putative THUA-like prot 22.8 52 0.0018 35.0 3.7 60 858-918 3-73 (281)
317 3bw2_A 2-nitropropane dioxygen 22.7 4.1E+02 0.014 28.9 11.3 77 880-984 142-235 (369)
318 1wlq_A Geminin; coiled-coil; 2 22.6 2.7E+02 0.0092 23.8 7.1 47 167-213 18-67 (83)
319 1qop_A Tryptophan synthase alp 22.1 2.5E+02 0.0085 29.3 8.9 86 872-985 136-233 (268)
320 4fxs_A Inosine-5'-monophosphat 21.8 1.2E+02 0.0043 34.9 6.9 66 893-985 233-299 (496)
321 1uii_A Geminin; human, DNA rep 21.6 3.8E+02 0.013 22.9 7.8 29 166-194 25-53 (83)
322 1thf_D HISF protein; thermophI 21.5 3.5E+02 0.012 27.4 9.9 29 957-985 74-102 (253)
323 1hjb_A Ccaat/enhancer binding 21.3 4E+02 0.014 23.0 8.4 65 166-235 12-80 (87)
324 3tdn_A FLR symmetric alpha-bet 21.0 2.8E+02 0.0094 28.3 8.9 28 957-984 79-106 (247)
325 3r2g_A Inosine 5'-monophosphat 21.0 1.4E+02 0.0048 32.9 6.8 66 893-985 102-168 (361)
326 1jvn_A Glutamine, bifunctional 20.7 4.3E+02 0.015 30.8 11.3 43 957-999 496-545 (555)
327 1yxy_A Putative N-acetylmannos 20.7 3.6E+02 0.012 27.1 9.6 84 872-985 121-214 (234)
328 2vws_A YFAU, 2-keto-3-deoxy su 20.6 7.2E+02 0.024 25.7 13.0 99 875-999 9-111 (267)
329 1sui_A Caffeoyl-COA O-methyltr 20.6 2.4E+02 0.0081 28.9 8.2 67 859-927 104-178 (247)
330 2qfm_A Spermine synthase; sper 20.4 1.4E+02 0.005 32.8 6.7 66 860-925 212-296 (364)
331 1jcn_A Inosine monophosphate d 20.3 4.5E+02 0.015 30.1 11.4 87 870-984 282-385 (514)
332 3fwz_A Inner membrane protein 20.2 4.9E+02 0.017 23.6 11.5 28 956-985 97-124 (140)
333 2i7c_A Spermidine synthase; tr 20.1 2.2E+02 0.0077 29.8 8.1 68 859-927 102-180 (283)
No 1
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-40 Score=374.05 Aligned_cols=335 Identities=24% Similarity=0.351 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCccee
Q 039716 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKRE 293 (1002)
Q Consensus 217 l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e 293 (1002)
+++++.+++.+++++|.+|+..|.++++.++|..+ .|+..++++|++..++... .........++..+.+..
T Consensus 3 l~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~-- 77 (349)
T 3a0r_A 3 VEHLRNFSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPVF-- 77 (349)
T ss_dssp ------CCCSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCCE--
T ss_pred hHHHHHHHHHHHhhhcCeEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCcee--
Confidence 44556778889999999999999999999998764 6888999999998887332 223334455666655432
Q ss_pred EEEEEeecCceEEEEEEeeeecCCCCE-EEEEEEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 294 ITFETELFGSKTFLIYVEPVFSKSGET-IGVNYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ 372 (1002)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~p~~~~~G~~-~gi~~~~~DITe~~~~~~~~~~l~~el~~~~~~~~el~k~~~~~e~~~~~k~ 372 (1002)
......+..++.+...|+.+..|.. .|+++++.|||++++.++++.+. +.....++
T Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~~---------------------~~~~~~~~ 134 (349)
T 3a0r_A 78 --LNFYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRR---------------------ERLSILGE 134 (349)
T ss_dssp --EECCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHH---------------------HHHHHHHH
T ss_pred --ecccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHHH---------------------HHHHHHHH
Confidence 2222346677888899999988775 58999999999987654433211 11112357
Q ss_pred HHHHhhhccccHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHH
Q 039716 373 MLATMSHEIRSPLTGVVSMAEILSNTKLD-REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451 (1002)
Q Consensus 373 fla~iSHELRTPL~~I~g~~elL~~~~l~-~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~ 451 (1002)
|++.+||||||||++|.+++++|.....+ +..+++++.+..++.++..++++++++++.. ..+...++++.++++.
T Consensus 135 ~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~---~~~~~~~~~l~~~~~~ 211 (349)
T 3a0r_A 135 MTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKER---QVLEFTEFNLNELIRE 211 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC----CEEEEEEEHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc---cccCCcccCHHHHHHH
Confidence 99999999999999999999999765333 3457889999999999999999999999943 3466788999999999
Q ss_pred HHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCC-CCeeEEEEEecCCCCcccchhhhhhhhh
Q 039716 452 VLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTP-EGKVGIKLYVVPEPPFAKEGLKQKSKAY 529 (1002)
Q Consensus 452 v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~-~G~I~I~v~~~~~~~~~~~~~~~~~~~~ 529 (1002)
++..+...+. +.+.+....... +..+.+|+.+|.|||.||++||+||++ .|.|.|.+...
T Consensus 212 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~----------------- 273 (349)
T 3a0r_A 212 VYVLFEEKIRKMNIDFCFETDNE-DLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM----------------- 273 (349)
T ss_dssp HHHHHHHHHTTTTCCCEEEESCS-CCEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEE-----------------
T ss_pred HHHHHHHHHHHcCcEEEEecCCC-CceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEEec-----------------
Confidence 9988876654 456666555544 346889999999999999999999995 57777766421
Q ss_pred hcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHh
Q 039716 530 QSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALP 609 (1002)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~ 609 (1002)
..++.|+|.|+|+|||++.++
T Consensus 274 -----------------------------------------------------------~~~~~i~v~D~G~Gi~~~~~~ 294 (349)
T 3a0r_A 274 -----------------------------------------------------------YTKVRVSVWNSGPPIPEELKE 294 (349)
T ss_dssp -----------------------------------------------------------TTEEEEEEEEESCCCCGGGGT
T ss_pred -----------------------------------------------------------CCEEEEEEEECCCCCChHHHh
Confidence 114889999999999999999
Q ss_pred hhhhhccCCCccccCcCCCccccHHHHHHHHH-HhCCEEEEEeecCCceEEEEEEeCC
Q 039716 610 TLFRKYMQVSADHARKYGGTGLGLAICKQLVE-LMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 610 ~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve-~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
+||+||++.+ .+|+||||+|||++|+ .|||.|+++|.++ ||+|+|+||..
T Consensus 295 ~if~~f~~~~------~~g~GlGL~i~~~~v~~~~gg~i~~~~~~~-Gt~f~i~lP~~ 345 (349)
T 3a0r_A 295 KIFSPFFTTK------TQGTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKT 345 (349)
T ss_dssp TTSSSCCCC------------CCCTHHHHHHHHTTCSBCCEEECSS-EEEEEEEEESC
T ss_pred hcCCCCccCC------CCCccchHHHHHHHHHHhCCCEEEEEeCCC-cEEEEEEecCC
Confidence 9999999753 4599999999999999 8999999999865 99999999975
No 2
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=1.5e-37 Score=337.42 Aligned_cols=221 Identities=31% Similarity=0.470 Sum_probs=180.8
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCC--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNT--K-LDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~--~-l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~ 447 (1002)
++|++++||||||||++|.|++++|... . .....+++++.|..++.+|..+|++++++++++.+...+...++++.+
T Consensus 21 ~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~~~~~l~~ 100 (258)
T 2c2a_A 21 TEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCD 100 (258)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCccceecHHH
Confidence 4799999999999999999999988643 1 234567899999999999999999999999999999888889999999
Q ss_pred HHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC----eeEEEEEecCCCCcccchh
Q 039716 448 VVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG----KVGIKLYVVPEPPFAKEGL 522 (1002)
Q Consensus 448 li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G----~I~I~v~~~~~~~~~~~~~ 522 (1002)
++++++..+...+. +.+.+........+..+.+|+.+|.|||.|||.||+||++.| .|.|.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~---------- 170 (258)
T 2c2a_A 101 LVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK---------- 170 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE----------
T ss_pred HHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecC----------
Confidence 99999988776543 556655554444456788999999999999999999999754 355444211
Q ss_pred hhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCC
Q 039716 523 KQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIG 602 (1002)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiG 602 (1002)
...+.|.|.|+|+|
T Consensus 171 ------------------------------------------------------------------~~~~~i~V~D~G~G 184 (258)
T 2c2a_A 171 ------------------------------------------------------------------DGGVLIIVEDNGIG 184 (258)
T ss_dssp ------------------------------------------------------------------TTEEEEEEEECSSC
T ss_pred ------------------------------------------------------------------CCeEEEEEEecCCC
Confidence 11478999999999
Q ss_pred CCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 603 IPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 603 I~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
|+++.+++||+|||+.+...+...+|+||||+|||++|+.|||+|+++|.+|+||+|+|+||...
T Consensus 185 i~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 185 IPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 249 (258)
T ss_dssp CCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred CCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeCCC
Confidence 99999999999999987655555679999999999999999999999999999999999999753
No 3
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=1.8e-32 Score=298.65 Aligned_cols=215 Identities=31% Similarity=0.504 Sum_probs=188.1
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNT-KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~-~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li 449 (1002)
++|++.++|||||||++|.+++++|... ..+++.++++..+..++.++..++++++++++++.+...+...++++.+++
T Consensus 41 ~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~l 120 (268)
T 4ew8_A 41 RDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLL 120 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEEEHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeeccHHHHH
Confidence 4799999999999999999999999764 357788999999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCcccchhhhhhh
Q 039716 450 KHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAKEGLKQKSK 527 (1002)
Q Consensus 450 ~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~~~~~~~~~ 527 (1002)
..++..+..... +.+.+...+....+ .+.+|+..|.|||.|||.||+||++. |.|.|.+...
T Consensus 121 ~~~~~~~~~~~~~~~i~i~~~~~~~~~-~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~--------------- 184 (268)
T 4ew8_A 121 LNAQERALKDAQLGGVTLAVECEEDVG-LIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA--------------- 184 (268)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTSC-EEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC---------------
T ss_pred HHHHHHHHhhhhccCceEEEEcCCCCc-eEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEEec---------------
Confidence 999988776544 56777777766554 58899999999999999999999986 6777766421
Q ss_pred hhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCc
Q 039716 528 AYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607 (1002)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~ 607 (1002)
..++.|.|.|+|+||+++.
T Consensus 185 -------------------------------------------------------------~~~~~i~V~D~G~Gi~~~~ 203 (268)
T 4ew8_A 185 -------------------------------------------------------------LGEVRLDVSDTGRGVPFHV 203 (268)
T ss_dssp -------------------------------------------------------------SSEEEEEEEESSCCCCHHH
T ss_pred -------------------------------------------------------------CCEEEEEEEcCCCCCCHHH
Confidence 1148899999999999999
Q ss_pred HhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCC
Q 039716 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668 (1002)
Q Consensus 608 l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~ 668 (1002)
++++|+||++. +.+|+||||+||+++++.|||+|++.|.+|+||+|+|.||....
T Consensus 204 ~~~if~~~~~~------~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~ 258 (268)
T 4ew8_A 204 QAHIFDRFVGR------DRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQQ 258 (268)
T ss_dssp HTTTTSTTCCC------SSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC-
T ss_pred HHHHHHHHhcC------CCCCCcccHHHHHHHHHHcCCEEEEEecCCCCEEEEEEecCCCC
Confidence 99999999953 33699999999999999999999999999999999999998643
No 4
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=4e-34 Score=301.96 Aligned_cols=213 Identities=21% Similarity=0.336 Sum_probs=127.7
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKLD-REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVV 449 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~~l~-~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li 449 (1002)
++|++.+||||||||++|.++++++.....+ +..++++..+..+++++..++++++++++++.+.......++++.+++
T Consensus 3 ~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~~ 82 (222)
T 3jz3_A 3 RRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLL 82 (222)
T ss_dssp -------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHHH
T ss_pred HHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHHH
Confidence 4799999999999999999999998755433 344677888999999999999999999999998888888899999999
Q ss_pred HHHHHHHHHHH-hhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC-eeEEEEEecCCCCcccchhhhhhh
Q 039716 450 KHVLQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKLYVVPEPPFAKEGLKQKSK 527 (1002)
Q Consensus 450 ~~v~~~~~~~~-~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G-~I~I~v~~~~~~~~~~~~~~~~~~ 527 (1002)
++++..+.... .+.+.+...+... +..+.+|+.+|.|||.|||.||+||++.| .|.|.+..
T Consensus 83 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~~---------------- 145 (222)
T 3jz3_A 83 QSSVMDIYHTAQQAKIDVRLTLNAH-SIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNA---------------- 145 (222)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSC-SCEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEECS----------------
T ss_pred HHHHHHHHHHHHHhCCeEEEeeCCc-ceEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcc----------------
Confidence 99988876654 3567777666555 34688999999999999999999999765 45554310
Q ss_pred hhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCc
Q 039716 528 AYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENA 607 (1002)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~ 607 (1002)
. .|.|.|+|+||+++.
T Consensus 146 ------------------------------------------------------------~----~i~V~D~G~Gi~~~~ 161 (222)
T 3jz3_A 146 ------------------------------------------------------------D----NFIVRDNGPGVTPEA 161 (222)
T ss_dssp ------------------------------------------------------------S----EEEEECSCC------
T ss_pred ------------------------------------------------------------C----eEEEEECCCCCCHHH
Confidence 0 167999999999999
Q ss_pred HhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 608 LPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 608 l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
+++||+||++.+. .+.+|+||||+|||++++.|||+|+++|.+|+||+|+|+||...
T Consensus 162 ~~~if~~f~~~~~---~~~~g~GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~P~~~ 218 (222)
T 3jz3_A 162 LARIGERFYRPPG---QTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLEHH 218 (222)
T ss_dssp -----------------------CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCCC-
T ss_pred HHHHHhhhccCCC---CCCCcccccHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeecCCC
Confidence 9999999998543 24469999999999999999999999999999999999999754
No 5
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=1e-32 Score=318.11 Aligned_cols=219 Identities=18% Similarity=0.227 Sum_probs=183.2
Q ss_pred HHHHHHHHhhhccccHHHHHH-HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHH
Q 039716 369 RAKQMLATMSHEIRSPLTGVV-SMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPRE 447 (1002)
Q Consensus 369 ~~k~fla~iSHELRTPL~~I~-g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~ 447 (1002)
+..+|+++++||+||||++|. |+.+++.....+++.+++++.+..++.+|..+|+++|++++++.+.+.+...++++.+
T Consensus 120 ~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~~l~~ 199 (388)
T 1gkz_A 120 QYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKK 199 (388)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEECHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCCCHHH
Confidence 445899999999999999999 7777766544467788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-h-----cceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC---------eeEEEEEec
Q 039716 448 VVKHVLQTAAASLQ-K-----ILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG---------KVGIKLYVV 512 (1002)
Q Consensus 448 li~~v~~~~~~~~~-k-----~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G---------~I~I~v~~~ 512 (1002)
++++++..+..... + .+.+.. +.+..+.+|+.+|.|||.|||.||+||+.+| .|.|.+...
T Consensus 200 li~~~~~~~~~~~~~~~g~~~~i~i~~----~~~~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~ 275 (388)
T 1gkz_A 200 IIEKWVDFARRLCEHKYGNAPRVRING----HVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANN 275 (388)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCEEEEE----STTCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEc----cCCCceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeC
Confidence 99999988876554 3 233332 2234578899999999999999999999765 566665321
Q ss_pred CCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEE
Q 039716 513 PEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWI 592 (1002)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 592 (1002)
..++
T Consensus 276 ----------------------------------------------------------------------------~~~v 279 (388)
T 1gkz_A 276 ----------------------------------------------------------------------------DVDL 279 (388)
T ss_dssp ----------------------------------------------------------------------------SSEE
T ss_pred ----------------------------------------------------------------------------CCEE
Confidence 1258
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCccc--------------------cCcCCCccccHHHHHHHHHHhCCEEEEEee
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSADH--------------------ARKYGGTGLGLAICKQLVELMGGRLTVTSK 652 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~--------------------~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~ 652 (1002)
.|.|.|+|+||+++.+++||+|||+++... ++..+|+||||+|||.+|+.|||+|++.|.
T Consensus 280 ~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~ 359 (388)
T 1gkz_A 280 IIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSL 359 (388)
T ss_dssp EEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEec
Confidence 899999999999999999999999987532 223479999999999999999999999999
Q ss_pred cCCceEEEEEEeCCC
Q 039716 653 VHCGSTFTFILPYQV 667 (1002)
Q Consensus 653 ~g~GTtF~~~LP~~~ 667 (1002)
+|.||+|+|+||...
T Consensus 360 ~g~Gt~f~i~LP~~~ 374 (388)
T 1gkz_A 360 QGIGTDVYLRLRHID 374 (388)
T ss_dssp TTTEEEEEEEEECSS
T ss_pred CCCcEEEEEEecCCC
Confidence 999999999999754
No 6
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=1.5e-32 Score=317.32 Aligned_cols=218 Identities=18% Similarity=0.156 Sum_probs=169.1
Q ss_pred HHHHHhhhcccc-----HHHHHHHHHHHHhCCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHhhhc-CCeeeE
Q 039716 372 QMLATMSHEIRS-----PLTGVVSMAEILSNTKLDRE----QRQLLG--VMISSGDLVLQLINDILDLSKVES-GVMKLE 439 (1002)
Q Consensus 372 ~fla~iSHELRT-----PL~~I~g~~elL~~~~l~~~----~~~~l~--~i~~s~~~L~~LIndlLd~skies-g~~~l~ 439 (1002)
+|++++|||||| ||+.|.|+++++.....++. ..++++ .+...+.+| +|+++|++++.+. +...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 488899999999 99999999999876544433 334777 478888999 9999999999987 566666
Q ss_pred e----eecCHHHHHHHHHHHHHHHHh------hcceecccc--CCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCe---
Q 039716 440 A----AKFRPREVVKHVLQTAAASLQ------KILMLEGDI--ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK--- 504 (1002)
Q Consensus 440 ~----~~~~l~~li~~v~~~~~~~~~------k~i~l~~~i--~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~--- 504 (1002)
. .++++.+++++++..+...+. +.+.+.... .+..+..+.+|+.+|.|||.|||.||+||+++|.
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 6 889999999999988876654 556665422 1233457899999999999999999999998764
Q ss_pred -----eEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCC
Q 039716 505 -----VGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHG 579 (1002)
Q Consensus 505 -----I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1002)
|.|.+...
T Consensus 255 ~~~~~I~I~~~~~------------------------------------------------------------------- 267 (394)
T 2btz_A 255 LILPPIKVMVALG------------------------------------------------------------------- 267 (394)
T ss_dssp SCCCCEEEEEEEC-------------------------------------------------------------------
T ss_pred CCCCCEEEEEEeC-------------------------------------------------------------------
Confidence 77665321
Q ss_pred CCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCcc-----ccCcCCCccccHHHHHHHHHHhCCEEEEEeecC
Q 039716 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSAD-----HARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654 (1002)
Q Consensus 580 ~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~-----~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g 654 (1002)
..++.|.|.|+|+||+++.+++||+|||+++.. ..+..+|+||||+|||.+|+.|||+|++.|.+|
T Consensus 268 ---------~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2btz_A 268 ---------EEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEG 338 (394)
T ss_dssp ---------SSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------CCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred ---------CCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 125889999999999999999999999998764 344567999999999999999999999999999
Q ss_pred CceEEEEEEeCCC
Q 039716 655 CGSTFTFILPYQV 667 (1002)
Q Consensus 655 ~GTtF~~~LP~~~ 667 (1002)
+||+|+|+||...
T Consensus 339 ~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 339 FGTDAVIYLKALS 351 (394)
T ss_dssp TEEEEEEEEESST
T ss_pred CceEEEEEecCCC
Confidence 9999999999754
No 7
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=4.1e-32 Score=313.71 Aligned_cols=217 Identities=17% Similarity=0.179 Sum_probs=178.3
Q ss_pred HHHHHhhhcccc-----HHHHHHHHHHHHhCCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHhhhcCCeeeE
Q 039716 372 QMLATMSHEIRS-----PLTGVVSMAEILSNTK----LDREQRQLLG--VMISSGDLVLQLINDILD-LSKVESGVMKLE 439 (1002)
Q Consensus 372 ~fla~iSHELRT-----PL~~I~g~~elL~~~~----l~~~~~~~l~--~i~~s~~~L~~LIndlLd-~skiesg~~~l~ 439 (1002)
+|+++++||||| ||+.|.|+++++.... ..++.+++++ .+.+.+.+| +|+++|+ +++. ++...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCCc
Confidence 478889999999 8999999999876542 3455678888 688999999 9999999 7776 6666665
Q ss_pred e----eecCHHHHHHHHHHHHHHHHh-h-----cceecccc--CCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCe---
Q 039716 440 A----AKFRPREVVKHVLQTAAASLQ-K-----ILMLEGDI--ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGK--- 504 (1002)
Q Consensus 440 ~----~~~~l~~li~~v~~~~~~~~~-k-----~i~l~~~i--~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~--- 504 (1002)
. .++++.+++++++..+...+. + .+.+...+ .+..+..+.+|+.+|.|||.|||.||+||+++|.
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 253 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQ 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 5 789999999999988776553 4 56666532 2234457899999999999999999999997654
Q ss_pred -----eEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCC
Q 039716 505 -----VGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHG 579 (1002)
Q Consensus 505 -----I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1002)
|.|.+...
T Consensus 254 ~~~~~I~I~~~~~------------------------------------------------------------------- 266 (394)
T 2e0a_A 254 PSLTPIEVIVVLG------------------------------------------------------------------- 266 (394)
T ss_dssp SSCCCEEEEEEEC-------------------------------------------------------------------
T ss_pred CCCCCEEEEEEeC-------------------------------------------------------------------
Confidence 77766321
Q ss_pred CCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCcc------ccCcCCCccccHHHHHHHHHHhCCEEEEEeec
Q 039716 580 NSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSAD------HARKYGGTGLGLAICKQLVELMGGRLTVTSKV 653 (1002)
Q Consensus 580 ~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~------~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~ 653 (1002)
..++.|.|.|+|+||+++.+++||+|||+++.. ..+..+|+||||+|||.+|+.|||+|+++|.+
T Consensus 267 ---------~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 267 ---------KEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp ---------SSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred ---------CCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 125889999999999999999999999998765 44456799999999999999999999999999
Q ss_pred CCceEEEEEEeCCC
Q 039716 654 HCGSTFTFILPYQV 667 (1002)
Q Consensus 654 g~GTtF~~~LP~~~ 667 (1002)
|.||+|+|+||...
T Consensus 338 g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 338 GYGTDAIIYLKALS 351 (394)
T ss_dssp TTEEEEEEEEESSG
T ss_pred CccEEEEEEeCCCC
Confidence 99999999999753
No 8
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.98 E-value=1.8e-31 Score=309.71 Aligned_cols=217 Identities=19% Similarity=0.172 Sum_probs=172.6
Q ss_pred HHHHhhhcccc-----HHHHHHHHHHHHhCCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc----C---
Q 039716 373 MLATMSHEIRS-----PLTGVVSMAEILSNTKLD----REQRQLLGV--MISSGDLVLQLINDILDLSKVES----G--- 434 (1002)
Q Consensus 373 fla~iSHELRT-----PL~~I~g~~elL~~~~l~----~~~~~~l~~--i~~s~~~L~~LIndlLd~skies----g--- 434 (1002)
+++.++||||| ||+.|.|+++++.....+ ++.+++++. +...+.+| +|+++|++++.+. +
T Consensus 108 ~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~~ 185 (407)
T 2q8g_A 108 DFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHRK 185 (407)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------C
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCcc
Confidence 44445599999 999999999988754433 234677887 67778888 9999999999976 3
Q ss_pred CeeeEeeecCHHHHHHHHHHHHHHHHh-h-----cceecccc--CCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC---
Q 039716 435 VMKLEAAKFRPREVVKHVLQTAAASLQ-K-----ILMLEGDI--ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG--- 503 (1002)
Q Consensus 435 ~~~l~~~~~~l~~li~~v~~~~~~~~~-k-----~i~l~~~i--~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G--- 503 (1002)
.+.+...++++.+++++++..+..... + .+.+...+ .+..+..+.+|+.+|.|||.|||.||+||+++|
T Consensus 186 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 265 (407)
T 2q8g_A 186 HIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHAN 265 (407)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 556677889999999999988776543 3 56666544 123445789999999999999999999999765
Q ss_pred -----eeEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccC
Q 039716 504 -----KVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSH 578 (1002)
Q Consensus 504 -----~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1002)
.|.|.+...
T Consensus 266 ~~~~~~I~I~~~~~------------------------------------------------------------------ 279 (407)
T 2q8g_A 266 RGVYPPIQVHVTLG------------------------------------------------------------------ 279 (407)
T ss_dssp TCCCCCEEEEEEEC------------------------------------------------------------------
T ss_pred CCCCCCEEEEEEeC------------------------------------------------------------------
Confidence 476665321
Q ss_pred CCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCcc------ccCcCCCccccHHHHHHHHHHhCCEEEEEee
Q 039716 579 GNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSAD------HARKYGGTGLGLAICKQLVELMGGRLTVTSK 652 (1002)
Q Consensus 579 ~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~------~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~ 652 (1002)
..++.|.|.|+|+||+++.+++||+|||+++.. ..+..+|+||||+|||.+|+.|||+|++.|.
T Consensus 280 ----------~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~ 349 (407)
T 2q8g_A 280 ----------NEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSL 349 (407)
T ss_dssp ----------SSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEE
T ss_pred ----------CCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEc
Confidence 115889999999999999999999999998764 2345579999999999999999999999999
Q ss_pred cCCceEEEEEEeCCC
Q 039716 653 VHCGSTFTFILPYQV 667 (1002)
Q Consensus 653 ~g~GTtF~~~LP~~~ 667 (1002)
+|.||+|+|+||...
T Consensus 350 ~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 350 EGYGTDAVIYIKALS 364 (407)
T ss_dssp TTTEEEEEEEEESSG
T ss_pred CCCceEEEEEECCCC
Confidence 999999999999753
No 9
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=1.9e-31 Score=288.31 Aligned_cols=195 Identities=18% Similarity=0.224 Sum_probs=144.0
Q ss_pred HHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHHH
Q 039716 373 MLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKHV 452 (1002)
Q Consensus 373 fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~v 452 (1002)
++++|||||||||++|.|++++|.+...++...++++.|..+++++..++ +++++..+.. ....++++.++...+
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~~~~~~ll----~~~r~~~~~~-~~~~~~~~~~l~~~~ 123 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADLL----QFTRVAFGAS-ASAENFDSRELEKLA 123 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHH----HHHHHHTTCC-SSCCCEEHHHHHHHH
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHH----HHHHHhhccc-cccccccHHHHHHHH
Confidence 67889999999999999999999887777777788999999888876655 5555543322 223456666544322
Q ss_pred HHHHHHHH-hhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC-eeEEEEEecCCCCcccchhhhhhhhhh
Q 039716 453 LQTAAASL-QKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG-KVGIKLYVVPEPPFAKEGLKQKSKAYQ 530 (1002)
Q Consensus 453 ~~~~~~~~-~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G-~I~I~v~~~~~~~~~~~~~~~~~~~~~ 530 (1002)
.... .+.+.+....++. ..+..+.|++.||+.||+||++.| .|.|.+...
T Consensus 124 ----~~~~~~~~i~l~~~~~~~------~~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~------------------ 175 (247)
T 4fpp_A 124 ----QGVFAHVRPTLDWQIEPQ------AMNKPSSRAVLNIAQIAASALPAGGVATVKGVAA------------------ 175 (247)
T ss_dssp ----HHHHTTSSSEEEECCCSC------EECHHHHHHHHHHHHHHHTTCTTCCEEEEEEEEE------------------
T ss_pred ----HHHHHhhhhhccccccch------hhhHHHHHHHHHHHHHHHHhcCCCCeEEEEEEEE------------------
Confidence 2222 2445555444322 135678999999999999999875 666665421
Q ss_pred cchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCC--CCcCcH
Q 039716 531 SATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIG--IPENAL 608 (1002)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiG--I~~e~l 608 (1002)
...+.|.|.|+|+| |+++..
T Consensus 176 ----------------------------------------------------------~~~~~i~V~D~G~Gi~i~~~~~ 197 (247)
T 4fpp_A 176 ----------------------------------------------------------DGRFSIIADAKGPRARLRPEVL 197 (247)
T ss_dssp ----------------------------------------------------------TTEEEEEEEEESTTCCCCHHHH
T ss_pred ----------------------------------------------------------CCEEEEEEEEcCCCCCCCHHHH
Confidence 11467788888876 677777
Q ss_pred hhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeC
Q 039716 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPY 665 (1002)
Q Consensus 609 ~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~ 665 (1002)
+++|++|++. +.+|+||||+|||+||+.|||+|+|+|.+| ||+|+|+||.
T Consensus 198 ~~~f~~~~~~------~~~G~GLGLai~~~iv~~hGG~i~v~s~~~-G~~f~v~LPA 247 (247)
T 4fpp_A 198 AGLKGEPLAE------GLGGPWVQAAYLNALVRAAGGQIAVEIGED-RASIAAWVPA 247 (247)
T ss_dssp HHHTTCCCCS------SCHHHHHHHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEEC
T ss_pred HHhcCCCCCC------CCCCccHHHHHHHHHHHHcCCEEEEEEcCC-EEEEEEEecC
Confidence 7888887643 446999999999999999999999999876 9999999993
No 10
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.97 E-value=3.9e-31 Score=283.26 Aligned_cols=211 Identities=26% Similarity=0.446 Sum_probs=176.4
Q ss_pred HHHHHHHhhhccccHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHH
Q 039716 370 AKQMLATMSHEIRSPLTGVVSMAEILSNTKLD-REQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448 (1002)
Q Consensus 370 ~k~fla~iSHELRTPL~~I~g~~elL~~~~l~-~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~l 448 (1002)
.++|++.++|||||||++|.+++++|.....+ ++.+++++.+..++.++..++++++++++.+.+ ...++++..+
T Consensus 14 ~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~~~ 89 (244)
T 3d36_A 14 VTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVKLE 89 (244)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHHHH
T ss_pred HHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhHHHH
Confidence 35799999999999999999999999876554 456789999999999999999999999998765 3467889999
Q ss_pred HHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCC-CCeeEEEEEecCCCCcccchhhhhh
Q 039716 449 VKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTP-EGKVGIKLYVVPEPPFAKEGLKQKS 526 (1002)
Q Consensus 449 i~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~-~G~I~I~v~~~~~~~~~~~~~~~~~ 526 (1002)
+..++..+..... +.+.+.....+ ..+.+|+..|.|||.||+.||+||++ .|.|.|.+...
T Consensus 90 l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~-------------- 152 (244)
T 3d36_A 90 IERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSID-------------- 152 (244)
T ss_dssp HHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEE--------------
T ss_pred HHHHHHHHHHHHHhcCeEEeccCCC---ceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEe--------------
Confidence 9999888776554 45666555433 46889999999999999999999995 46677766421
Q ss_pred hhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcC
Q 039716 527 KAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPEN 606 (1002)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e 606 (1002)
..++.|.|.|+|+||+++
T Consensus 153 --------------------------------------------------------------~~~~~i~i~D~G~gi~~~ 170 (244)
T 3d36_A 153 --------------------------------------------------------------NGRVLIRIADTGVGMTKE 170 (244)
T ss_dssp --------------------------------------------------------------TTEEEEEEEECSSCCCHH
T ss_pred --------------------------------------------------------------CCEEEEEEEecCCCCCHH
Confidence 114789999999999999
Q ss_pred cHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCC
Q 039716 607 ALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668 (1002)
Q Consensus 607 ~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~ 668 (1002)
.++++|+||++.+ ..+|+||||+||+++++.|||+|+++|.+++||+|+|+||+...
T Consensus 171 ~~~~if~~~~~~~-----~~~g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 171 QLERLGEPYFTTK-----GVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLASS 227 (244)
T ss_dssp HHHHTTSTTCCSS-----GGGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC-
T ss_pred HHHHHhcccccCC-----CCCCcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEecCCCC
Confidence 9999999999754 23589999999999999999999999999999999999998654
No 11
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.97 E-value=4.3e-31 Score=307.51 Aligned_cols=217 Identities=21% Similarity=0.192 Sum_probs=163.2
Q ss_pred HHHHHhhhccccHHH-----HHHHHHHHHhCCCCC----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh-hcCCee--
Q 039716 372 QMLATMSHEIRSPLT-----GVVSMAEILSNTKLD----REQRQLLGVMISS--GDLVLQLINDILDLSKV-ESGVMK-- 437 (1002)
Q Consensus 372 ~fla~iSHELRTPL~-----~I~g~~elL~~~~l~----~~~~~~l~~i~~s--~~~L~~LIndlLd~ski-esg~~~-- 437 (1002)
+|+ +++|||||||+ .|.|+++++.....+ ++..++++.+..+ +.+| +|+++|.+++. +.+...
T Consensus 120 ~f~-~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~~ 196 (419)
T 1y8o_A 120 NFL-QVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPKH 196 (419)
T ss_dssp HHH-HHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTTS
T ss_pred HHH-HHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCCCc
Confidence 465 56699999999 889999987653222 3456678886665 7788 99999776654 333322
Q ss_pred --eEeeecCHHHHHHHHHHHHHHHHh------hcceecccc--CCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCC----
Q 039716 438 --LEAAKFRPREVVKHVLQTAAASLQ------KILMLEGDI--ADDVPIEVIGDVLRIRQILTNLISNAIKFTPEG---- 503 (1002)
Q Consensus 438 --l~~~~~~l~~li~~v~~~~~~~~~------k~i~l~~~i--~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G---- 503 (1002)
....++++.+++++++..+..... +.+.+.... .+..+..+.+|+.+|.|||.|||.||+||+++|
T Consensus 197 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~~~ 276 (419)
T 1y8o_A 197 IGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDR 276 (419)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 234789999999999988766543 345554422 123455789999999999999999999999765
Q ss_pred -----eeEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccC
Q 039716 504 -----KVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSH 578 (1002)
Q Consensus 504 -----~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (1002)
.|.|.+...
T Consensus 277 ~~~~~~I~I~~~~~------------------------------------------------------------------ 290 (419)
T 1y8o_A 277 KEGYPAVKTLVTLG------------------------------------------------------------------ 290 (419)
T ss_dssp SSCCCCEEEEEEEC------------------------------------------------------------------
T ss_pred CCCCCCEEEEEEeC------------------------------------------------------------------
Confidence 466655321
Q ss_pred CCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCcc------ccCcCCCccccHHHHHHHHHHhCCEEEEEee
Q 039716 579 GNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSAD------HARKYGGTGLGLAICKQLVELMGGRLTVTSK 652 (1002)
Q Consensus 579 ~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~------~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~ 652 (1002)
..++.|.|.|+|+|||++.+++||+|||+++.. ..+..+|+||||+|||+||+.|||+|+++|.
T Consensus 291 ----------~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~ 360 (419)
T 1y8o_A 291 ----------KEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSM 360 (419)
T ss_dssp ----------SSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred ----------CCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHHHHHHhCCEEEEEec
Confidence 115889999999999999999999999998764 3445679999999999999999999999999
Q ss_pred cCCceEEEEEEeCCC
Q 039716 653 VHCGSTFTFILPYQV 667 (1002)
Q Consensus 653 ~g~GTtF~~~LP~~~ 667 (1002)
+|.||+|+|+||...
T Consensus 361 ~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 361 EGVGTDAVIYLKALS 375 (419)
T ss_dssp TTTEEEEEEEEESCG
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999999754
No 12
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.93 E-value=1e-25 Score=219.51 Aligned_cols=120 Identities=29% Similarity=0.517 Sum_probs=112.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
.+.|||||||++.++.+++.+|+..||. |..|.||.+|++.++...|||||+|++||+|||+++++.||+.+
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~------- 83 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE------- 83 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST-------
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC-------
Confidence 4568999999999999999999999986 78899999999999999999999999999999999999999743
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+++|||++||+...+...+|+++|+++||+|||+.++|...|++++
T Consensus 84 -----------------~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l 131 (134)
T 3to5_A 84 -----------------ELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIF 131 (134)
T ss_dssp -----------------TTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred -----------------CCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 346799999999999999999999999999999999999999999876
No 13
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.93 E-value=7.4e-26 Score=259.65 Aligned_cols=197 Identities=17% Similarity=0.177 Sum_probs=145.0
Q ss_pred HHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHHHHH
Q 039716 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREVVKH 451 (1002)
Q Consensus 372 ~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~li~~ 451 (1002)
+|+++++||||||++.|.++++.+.. +.+..++++|..+++++++++.- + ..+++..++..
T Consensus 12 d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~~------~--~~~~~~~~~~~ 72 (379)
T 1b3q_A 12 DNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVMK------I--RMVPISFVFNR 72 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHHH------H--HEEETHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHHH------c--ceecHHHHHHH
Confidence 79999999999999999998776543 46788899999999999999742 1 23445677766
Q ss_pred HHHHHHHHHh-hcceeccccCCCCCeeEEccHH---HHHHHHHHHHhhhhhcC-------------CCCeeEEEEEecCC
Q 039716 452 VLQTAAASLQ-KILMLEGDIADDVPIEVIGDVL---RIRQILTNLISNAIKFT-------------PEGKVGIKLYVVPE 514 (1002)
Q Consensus 452 v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~---rL~QIL~NLlsNAIKfT-------------~~G~I~I~v~~~~~ 514 (1002)
+...+..... .+..+...+.... +..|+. ++.|+|.||+.||+||+ +.|.|.|+++..
T Consensus 73 ~~~~~~~~~~~~~~~v~l~~~~~~---~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~-- 147 (379)
T 1b3q_A 73 FPRMVRDLAKKMNKEVNFIMRGED---TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHE-- 147 (379)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTT---CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEE--
T ss_pred HHHHHHHHHHHhCCeEEEEEcCCC---eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEe--
Confidence 6665554432 2333333333221 345774 56666999999999996 457777766421
Q ss_pred CCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEE
Q 039716 515 PPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRC 594 (1002)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 594 (1002)
..++.|
T Consensus 148 --------------------------------------------------------------------------~~~v~i 153 (379)
T 1b3q_A 148 --------------------------------------------------------------------------GNNVVI 153 (379)
T ss_dssp --------------------------------------------------------------------------TTEEEE
T ss_pred --------------------------------------------------------------------------CCEEEE
Confidence 115889
Q ss_pred EEEecCCCCCcCcH------------------------hhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEE
Q 039716 595 DVYDTGIGIPENAL------------------------PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVT 650 (1002)
Q Consensus 595 ~V~DtGiGI~~e~l------------------------~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~ 650 (1002)
+|.|+|+||+++.+ ++||+|||++... .+..+|+||||+|||++++.|||+|+++
T Consensus 154 ~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~-~~~~~G~GlGL~iv~~~v~~~gG~i~v~ 232 (379)
T 1b3q_A 154 EVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVESLNGSMGIE 232 (379)
T ss_dssp EEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC------------CCCSHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCc-cCCCCCccccHHHHHHHHHHCCCEEEEE
Confidence 99999999999987 8899999987643 3356799999999999999999999999
Q ss_pred eecCCceEEEEEEeCCC
Q 039716 651 SKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 651 S~~g~GTtF~~~LP~~~ 667 (1002)
|.+|+||+|+|+||+..
T Consensus 233 s~~g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 233 SEKDKGTKVTIRLPLTL 249 (379)
T ss_dssp EETTTEEEEEEEEESSC
T ss_pred EcCCCCeEEEeccCCcc
Confidence 99999999999999864
No 14
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.91 E-value=1.6e-23 Score=220.61 Aligned_cols=186 Identities=13% Similarity=0.133 Sum_probs=138.8
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeEeeecCHHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNT--KLDREQRQLLGVMISSGDLVLQLINDILDLSKVESGVMKLEAAKFRPREV 448 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~--~l~~~~~~~l~~i~~s~~~L~~LIndlLd~skiesg~~~l~~~~~~l~~l 448 (1002)
.++++.+.|++++||++|.++++++... ..++..++.+..+...+.+++..+.+++... .+.++.++
T Consensus 29 ~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~l~~~ 97 (218)
T 3ehh_A 29 QRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIRLKDE 97 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCCHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcCHHHH
Confidence 4688899999999999999999987542 2334466788888888888888888776432 24567777
Q ss_pred HHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhhhhhhh
Q 039716 449 VKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLKQKSKA 528 (1002)
Q Consensus 449 i~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~~~~~~ 528 (1002)
+..+...+. ..++.+........+.....+...|.+|+.||++||+||++.|.|.|.+...
T Consensus 98 l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~---------------- 158 (218)
T 3ehh_A 98 LINIKQILE---AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQL---------------- 158 (218)
T ss_dssp HHHHHHHHH---HTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE----------------
T ss_pred HHHHHHHHH---hcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEEe----------------
Confidence 776655543 2455555555544333345688899999999999999999888887776431
Q ss_pred hhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcH
Q 039716 529 YQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENAL 608 (1002)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l 608 (1002)
..++.|+|.|+|+||+++..
T Consensus 159 ------------------------------------------------------------~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 159 ------------------------------------------------------------WKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp ------------------------------------------------------------TTEEEEEEEESSCCCC----
T ss_pred ------------------------------------------------------------CCEEEEEEEECCcCCCCCCC
Confidence 11488999999999999865
Q ss_pred hhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 609 PTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 609 ~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
+|+||||+||+++|+.|||+|++.|.+ ||+|+|+||+.
T Consensus 179 ------------------~g~GlGL~~~~~~v~~~gG~i~~~s~~--Gt~~~i~lP~~ 216 (218)
T 3ehh_A 179 ------------------FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 216 (218)
T ss_dssp ----------------------CHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred ------------------CCCCCCHHHHHHHHHHcCCEEEEeCCC--CeEEEEEEecC
Confidence 489999999999999999999999998 99999999974
No 15
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.91 E-value=3.5e-24 Score=224.73 Aligned_cols=120 Identities=36% Similarity=0.540 Sum_probs=108.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCC-eEEEEcCHHHHHHHHHcC-------------CCcEEEEcCCCCCCCHHHHHH
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGH-SIDVVNNGVEAVHAVQCQ-------------NYDLILMDVCMPVMDGLKATR 923 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~-~v~~a~~G~eAl~~~~~~-------------~~DlIlmDi~MP~mdG~e~~~ 923 (1002)
.+.+||||||++.++..++.+|+..|| .|..|.++.+|++.+... .|||||+|+.||+|||+++++
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~ 139 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATR 139 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 356899999999999999999999998 899999999999999875 899999999999999999999
Q ss_pred HHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC-CHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 924 LIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA-LSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 924 ~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~-~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.||+.... ..+.+|||++|++. ..+...+|+++|+++||.||++ +|...|++++
T Consensus 140 ~lr~~~~~----------------------~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l 194 (206)
T 3mm4_A 140 EIRKVEKS----------------------YGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIE 194 (206)
T ss_dssp HHHHHHHT----------------------TTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC
T ss_pred HHHhhhhh----------------------cCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHH
Confidence 99975321 13679999999998 7888999999999999999999 8998888765
No 16
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=2.2e-23 Score=206.58 Aligned_cols=146 Identities=21% Similarity=0.293 Sum_probs=113.5
Q ss_pred EeeecCHHHHHHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcc
Q 039716 439 EAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFA 518 (1002)
Q Consensus 439 ~~~~~~l~~li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~ 518 (1002)
+..++++.+++++++..+.... +.+.+..... .+..+.+|+.+|.|||.|||.||+||++.|.|.|.+...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~I~i~~~~~------ 74 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY-PDLDVSLVPS--PTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSS------ 74 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS-TTCEEEECSC--CCCEEEECHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEE------
T ss_pred cccccCHHHHHHHHHHHHHHhc-cCCceEEccC--CCceEecCHHHHHHHHHHHHHHHHhcCCCcEEEEEEEec------
Confidence 3467899999999998876544 3344444433 345789999999999999999999999999777766421
Q ss_pred cchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEe
Q 039716 519 KEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYD 598 (1002)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~D 598 (1002)
...+.|.|.|
T Consensus 75 ----------------------------------------------------------------------~~~~~i~v~D 84 (150)
T 1ysr_A 75 ----------------------------------------------------------------------RAGVEIAIDD 84 (150)
T ss_dssp ----------------------------------------------------------------------TTEEEEEEEE
T ss_pred ----------------------------------------------------------------------CCEEEEEEEE
Confidence 1147899999
Q ss_pred cCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 599 TGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 599 tGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
+|+||+++.++++|+||++.+.. +.+|+||||+||+++++.|||+|+++|.+++||+|+|.||..
T Consensus 85 ~G~gi~~~~~~~if~~f~~~~~~---~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 149 (150)
T 1ysr_A 85 NGSGVPEGERQVVFERFSRGSTA---SHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGP 149 (150)
T ss_dssp SSSCCCGGGHHHHHTSCC--------------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEECC
T ss_pred CCCCCCHHHHHHHhcccccCCCC---CCCCCCcCHHHHHHHHHHcCCEEEEeecCCCCEEEEEEEeCC
Confidence 99999999999999999986432 346999999999999999999999999999999999999963
No 17
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.89 E-value=1.7e-22 Score=200.25 Aligned_cols=144 Identities=21% Similarity=0.306 Sum_probs=121.2
Q ss_pred eecCHHHHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCccc
Q 039716 441 AKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAK 519 (1002)
Q Consensus 441 ~~~~l~~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~ 519 (1002)
+++++.+++++++..+...+. +.+.+...++... .+.+|+..|.|||.|||.||+||++. .|.|.+...
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~i~i~~~~~------- 71 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI--SFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQT------- 71 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC--EEESCHHHHHHHHHHHHHHHHHHCSS-EEEEEEEEC-------
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc--eEeeCHHHHHHHHHHHHHHHHHhCcC-eEEEEEEec-------
Confidence 468899999999998877664 5677777665543 58899999999999999999999976 666655321
Q ss_pred chhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEec
Q 039716 520 EGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDT 599 (1002)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~Dt 599 (1002)
..++.|.|.|+
T Consensus 72 ---------------------------------------------------------------------~~~~~i~i~D~ 82 (152)
T 1id0_A 72 ---------------------------------------------------------------------DEHLYIVVEDD 82 (152)
T ss_dssp ---------------------------------------------------------------------SSCEEEEEEES
T ss_pred ---------------------------------------------------------------------CCEEEEEEEeC
Confidence 11378999999
Q ss_pred CCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 600 GIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 600 GiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
|+||+++.++++|+||++.+.. .+|+||||+||+++++.|||+|+++|.++.||+|+|+||...
T Consensus 83 G~gi~~~~~~~~f~~~~~~~~~----~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~ 146 (152)
T 1id0_A 83 GPGIPLSKREVIFDRGQRVDTL----RPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQH 146 (152)
T ss_dssp SSCCCGGGTTGGGSCCCCTTCC----CTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECCCC
T ss_pred CCCcCHHHHHHHhccceeccCC----CCCcccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeccc
Confidence 9999999999999999986542 369999999999999999999999999999999999999864
No 18
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.89 E-value=9.1e-23 Score=204.73 Aligned_cols=148 Identities=24% Similarity=0.329 Sum_probs=120.4
Q ss_pred eEeeecCHHHHHHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCc
Q 039716 438 LEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPF 517 (1002)
Q Consensus 438 l~~~~~~l~~li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~ 517 (1002)
+...++++.+++++++..+.. ....+...+.. .+..+.+|+.+|.|||.|||.||+||+ .|.|.|.+...
T Consensus 5 ~~~~~~~l~~~~~~~~~~~~~---~~~~i~~~~~~-~~~~v~~d~~~l~~il~nll~NAik~~-~~~I~i~~~~~----- 74 (161)
T 1bxd_A 5 MPMEMADLNAVLGEVIAAESG---YEREIETALYP-GSIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTE----- 74 (161)
T ss_dssp CCSEEECHHHHHHHHHHHHCS---SSCCEEEECCS-SCCCEEECHHHHHHHHHHHHHHHHTTC-CSCEEEEEEEE-----
T ss_pred ccccccCHHHHHHHHHHHhhh---hcceEEEEecC-CCceEEECHHHHHHHHHHHHHHHHhhc-CCeEEEEEEEc-----
Confidence 455789999999998877432 23333333322 234688999999999999999999999 78888776421
Q ss_pred ccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEE
Q 039716 518 AKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVY 597 (1002)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~ 597 (1002)
..++.|.|.
T Consensus 75 -----------------------------------------------------------------------~~~~~i~i~ 83 (161)
T 1bxd_A 75 -----------------------------------------------------------------------PNRAWFQVE 83 (161)
T ss_dssp -----------------------------------------------------------------------TTEEEEEEE
T ss_pred -----------------------------------------------------------------------CCEEEEEEE
Confidence 114789999
Q ss_pred ecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCC
Q 039716 598 DTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668 (1002)
Q Consensus 598 DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~ 668 (1002)
|+|+||+++.++++|+||++.+.. +..+|+||||+||+++++.|||+|+++|.++.||+|+|.||+...
T Consensus 84 D~G~gi~~~~~~~~f~~f~~~~~~--~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~ 152 (161)
T 1bxd_A 84 DDGPGIAPEQRKHLFQPFVRGDSA--RTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVT 152 (161)
T ss_dssp EESSCSCTTGGGCSSCCCCCCSCC--CCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECCCSC
T ss_pred eCCCCCCHHHHHHhCCCceeCCCC--CCCCCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEEeCCcc
Confidence 999999999999999999987653 334699999999999999999999999999999999999998643
No 19
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.88 E-value=1.6e-22 Score=206.43 Aligned_cols=152 Identities=33% Similarity=0.529 Sum_probs=121.0
Q ss_pred ecCHHHHHHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCC-CeeEEEEEecCCCCcccc
Q 039716 442 KFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPE-GKVGIKLYVVPEPPFAKE 520 (1002)
Q Consensus 442 ~~~l~~li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~-G~I~I~v~~~~~~~~~~~ 520 (1002)
+|++.++++.++..+.....+.+.+...+... +..+.+|+..|.+||.|||.||+||++. |.|.|.+.....
T Consensus 2 ~v~l~~~l~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~------ 74 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMTKEQHVEFIRNLPDR-DLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEE------ 74 (177)
T ss_dssp EEEHHHHHHHHHHHHHTSSCC--CEEEECCSS-CCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETT------
T ss_pred eeeHHHHHHHHHHHHHHHHhcCcEEEEecCCC-CcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccC------
Confidence 57889999999888776644566666666543 4568999999999999999999999965 666666643211
Q ss_pred hhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecC
Q 039716 521 GLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTG 600 (1002)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG 600 (1002)
..++.|.|.|+|
T Consensus 75 --------------------------------------------------------------------~~~~~i~V~D~G 86 (177)
T 3sl2_A 75 --------------------------------------------------------------------EELLYISVKDEG 86 (177)
T ss_dssp --------------------------------------------------------------------TTEEEEEEECCS
T ss_pred --------------------------------------------------------------------CCEEEEEEEECC
Confidence 114889999999
Q ss_pred CCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCCC
Q 039716 601 IGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQVS 668 (1002)
Q Consensus 601 iGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~~ 668 (1002)
+||+++.+.++|++|++.+...+.+.+|+||||+||+++++.|||+|++.|.++.||+|+|.||+...
T Consensus 87 ~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt~~~i~lP~~~~ 154 (177)
T 3sl2_A 87 IGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKEE 154 (177)
T ss_dssp SCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEEEEEC-
T ss_pred CCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEeCCCC
Confidence 99999999999999999876656667799999999999999999999999999999999999998653
No 20
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.87 E-value=2.4e-22 Score=200.46 Aligned_cols=156 Identities=26% Similarity=0.348 Sum_probs=105.8
Q ss_pred eeEeeecCHHHHHHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCC--CCeeEEEEEecCC
Q 039716 437 KLEAAKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTP--EGKVGIKLYVVPE 514 (1002)
Q Consensus 437 ~l~~~~~~l~~li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~--~G~I~I~v~~~~~ 514 (1002)
.++..++++.++++.++..+.....+.+.+...+....+ .+.+|+.+|.|||.||+.||+||++ .|.|.|.+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~ 80 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSMELPDNVRLIRDYDPSLP-ELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQ 80 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTTCCTTEEEEEECCTTCC-CEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhhcccCcEEEEEcCCCCC-eeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEecccc
Confidence 356678999999999998877654456777777665554 4889999999999999999999997 6777777643211
Q ss_pred CCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEE
Q 039716 515 PPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRC 594 (1002)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 594 (1002)
.. ........++.|
T Consensus 81 ~~------------------------------------------------------------------~~~~~~~~~~~i 94 (160)
T 1r62_A 81 LT------------------------------------------------------------------LHGERYRLAARI 94 (160)
T ss_dssp EE------------------------------------------------------------------ETTEEEEEEEEE
T ss_pred cc------------------------------------------------------------------ccccccccEEEE
Confidence 00 000012236889
Q ss_pred EEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 595 DVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 595 ~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
.|.|+|+||+++.++++|+||++.+ .+|+||||+||+++++.|||+|+++|.+++ |+|+|.||+.
T Consensus 95 ~v~D~G~gi~~~~~~~lf~~~~~~~------~~g~GlGL~i~~~~~~~~gG~l~i~s~~~~-~~~~i~lP~~ 159 (160)
T 1r62_A 95 DVEDNGPGIPPHLQDTLFYPMVSGR------EGGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPIR 159 (160)
T ss_dssp EEEEECTTC--------------------------CHHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEEEEE
T ss_pred EEEeCCCCCCHHHHHHhhCccccCC------CCCCccCHHHHHHHHHHCCCeEEEEeCCCC-EEEEEEEecc
Confidence 9999999999999999999999753 358999999999999999999999999886 9999999974
No 21
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.87 E-value=1.4e-21 Score=193.42 Aligned_cols=144 Identities=28% Similarity=0.504 Sum_probs=118.9
Q ss_pred EeeecCHHHHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCC-CCeeEEEEEecCCCC
Q 039716 439 EAAKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTP-EGKVGIKLYVVPEPP 516 (1002)
Q Consensus 439 ~~~~~~l~~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~-~G~I~I~v~~~~~~~ 516 (1002)
+..++++.+++++++..+...+. +.+.+...+... +..+.+|+..|.|||.||+.||+||++ .|.|.|.+...
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~~~---- 76 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNE-DLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM---- 76 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCS-SCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEC----
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCC-CcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEEec----
Confidence 35678999999999988876554 567777666543 446899999999999999999999995 56777765321
Q ss_pred cccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEE
Q 039716 517 FAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDV 596 (1002)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V 596 (1002)
..++.|.|
T Consensus 77 ------------------------------------------------------------------------~~~~~i~i 84 (152)
T 3a0y_A 77 ------------------------------------------------------------------------YTKVRVSV 84 (152)
T ss_dssp ------------------------------------------------------------------------SSEEEEEE
T ss_pred ------------------------------------------------------------------------CCEEEEEE
Confidence 11488999
Q ss_pred EecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHH-HhCCEEEEEeecCCceEEEEEEeCC
Q 039716 597 YDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVE-LMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 597 ~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve-~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
.|+|+||+++.++++|+||++.+ .+|+||||+||+++++ .|||.+.+++.++ ||+|+|.||..
T Consensus 85 ~D~G~g~~~~~~~~~f~~~~~~~------~~g~GlGL~i~~~~~~~~~gg~~~~~~~~~-g~~~~i~lP~~ 148 (152)
T 3a0y_A 85 WNSGPPIPEELKEKIFSPFFTTK------TQGTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKT 148 (152)
T ss_dssp EEESCCCCGGGTTGGGSTTCCCC--------CCCCSHHHHHHHHHTTTSCEEEEEEETT-EEEEEEEEESC
T ss_pred EeCCCCcCHHHHHhHhhhhccCC------CCCCCcCHHHHHHHHHHhCCcEEEEecCCC-CEEEEEEeCCC
Confidence 99999999999999999999743 3589999999999999 9999999999865 99999999975
No 22
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.87 E-value=2.7e-23 Score=199.06 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=103.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
.+.|||||||++.++..++.+|+..||.|. +|.||.+|++.+...+||+||+|++||+|||+++++.||+
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~--------- 77 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAE--------- 77 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHH---------
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHc---------
Confidence 457899999999999999999999999975 7999999999999999999999999999999999999996
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
+++|||++||+.+... +.++|+++||+|||+.++|..+|++++
T Consensus 78 -------------------~~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 78 -------------------RNVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp -------------------TCCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred -------------------CCCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 2489999999986554 346799999999999999999998865
No 23
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.85 E-value=3e-21 Score=199.02 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=114.0
Q ss_pred eecCHHHHHHHHHHHHHHHHh-hcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcC-------------CCCeeE
Q 039716 441 AKFRPREVVKHVLQTAAASLQ-KILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFT-------------PEGKVG 506 (1002)
Q Consensus 441 ~~~~l~~li~~v~~~~~~~~~-k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT-------------~~G~I~ 506 (1002)
.++++.++++.+...+...+. +.+.+...+..........+..+|.|||.|||.||+||+ +.|.|.
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~ 82 (189)
T 1i58_A 3 HMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLI 82 (189)
T ss_dssp SEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEE
T ss_pred eEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCCeEE
Confidence 467888999998888776554 445555544433322223445667777999999999995 456777
Q ss_pred EEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCcccc
Q 039716 507 IKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDL 586 (1002)
Q Consensus 507 I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (1002)
|.+...
T Consensus 83 I~~~~~-------------------------------------------------------------------------- 88 (189)
T 1i58_A 83 LSARHE-------------------------------------------------------------------------- 88 (189)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred EEEEec--------------------------------------------------------------------------
Confidence 766421
Q ss_pred ccceEEEEEEEecCCCCCcCcH------------------------hhhhhhccCCCccccCcCCCccccHHHHHHHHHH
Q 039716 587 EATVWIRCDVYDTGIGIPENAL------------------------PTLFRKYMQVSADHARKYGGTGLGLAICKQLVEL 642 (1002)
Q Consensus 587 ~~~~~l~i~V~DtGiGI~~e~l------------------------~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~ 642 (1002)
..++.|.|.|+|+||+++.+ +++|+||++.... .+..+|+||||+||+++++.
T Consensus 89 --~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~-~~~~~g~GlGL~iv~~~~~~ 165 (189)
T 1i58_A 89 --GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-VSEVSGRGVGMDVVKNVVES 165 (189)
T ss_dssp --TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHH-HHGGGTCCCHHHHHHHHHHH
T ss_pred --CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCccccccc-CCCCCCCccCHHHHHHHHHH
Confidence 11588999999999999986 8999999986542 22346999999999999999
Q ss_pred hCCEEEEEeecCCceEEEEEEeC
Q 039716 643 MGGRLTVTSKVHCGSTFTFILPY 665 (1002)
Q Consensus 643 ~gG~I~v~S~~g~GTtF~~~LP~ 665 (1002)
|||+|+++|.+++||+|+|+||+
T Consensus 166 ~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 166 LNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp TTCEEEEEEETTTEEEEEEEEEC
T ss_pred cCCEEEEEeCCCCceEEEEEEeC
Confidence 99999999999999999999997
No 24
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.84 E-value=2.8e-20 Score=177.35 Aligned_cols=118 Identities=27% Similarity=0.427 Sum_probs=110.8
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..||.|..+.||.+|++.+....||+||+|+.||+|||+++++.||+..
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~---------- 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE---------- 72 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc----------
Confidence 4799999999999999999999999999999999999999999999999999999999999999999632
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+++|||++|+....+...+++++|+++||.||++.++|...|++.+
T Consensus 73 --------------~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 73 --------------EWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp --------------TTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred --------------cccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 236799999999999999999999999999999999999999998865
No 25
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.82 E-value=1.7e-19 Score=174.71 Aligned_cols=117 Identities=42% Similarity=0.632 Sum_probs=107.8
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCC-eEEEEcCHHHHHHHHHc-----CCCcEEEEcCCCCCCCHHHHHHHHhccccCCC
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGH-SIDVVNNGVEAVHAVQC-----QNYDLILMDVCMPVMDGLKATRLIRSFEDTGN 933 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~-~v~~a~~G~eAl~~~~~-----~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~ 933 (1002)
.+||||||++.++..++.+|+..|+ .|..+.+|.+|++.+.. ..||+||+|+.||+|||+++++.||+..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~---- 78 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDL---- 78 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHS----
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhc----
Confidence 5799999999999999999999997 48899999999999887 7899999999999999999999999621
Q ss_pred chhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 934 WDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|++...+...+|+++|+++||.||++.++|...|++++
T Consensus 79 ---------------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 125 (133)
T 2r25_B 79 ---------------------GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFC 125 (133)
T ss_dssp ---------------------CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred ---------------------CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 23589999999999999999999999999999999999999998875
No 26
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.82 E-value=1.7e-19 Score=175.40 Aligned_cols=119 Identities=21% Similarity=0.358 Sum_probs=110.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..++.+|+..||.|..+.+|.+|++.+....||+||+|+.||+|||+++++.||+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~--------- 74 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP--------- 74 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG---------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC---------
Confidence 45899999999999999999999999999999999999999999999999999999999999999999732
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+..+.+...+++++|+++||.||++.++|...|++.+
T Consensus 75 ---------------~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l 122 (136)
T 3t6k_A 75 ---------------LTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNIL 122 (136)
T ss_dssp ---------------GGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHH
T ss_pred ---------------CcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 135789999999999999999999999999999999999999998754
No 27
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.81 E-value=2.6e-19 Score=170.01 Aligned_cols=115 Identities=29% Similarity=0.426 Sum_probs=108.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..||.|..+.+|.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~----------- 71 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKK----------- 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTT-----------
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 489999999999999999999999999999999999999999999999999999999999999999952
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+|||++|+........+++++|+++||.||++.++|...|++.+
T Consensus 72 ----------------~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 72 ----------------YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117 (120)
T ss_dssp ----------------CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred ----------------CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999998764
No 28
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.81 E-value=4e-19 Score=170.80 Aligned_cols=120 Identities=31% Similarity=0.466 Sum_probs=109.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCe-EEEEcCHHHHHHHHHcC-CCcEEEEcCCCCCCCHHHHHHHHhccccCCCch
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQCQ-NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~-v~~a~~G~eAl~~~~~~-~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~ 935 (1002)
.+.+||||||++..+..++.+|++.||. +..+.++.+|++.+... .||+||+|+.||+|||+++++.||+..
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~------ 77 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDS------ 77 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTST------
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC------
Confidence 3568999999999999999999999995 89999999999988765 799999999999999999999999632
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|++.......+|+++|+++||.||++.++|...|++++
T Consensus 78 ------------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l 125 (129)
T 3h1g_A 78 ------------------RFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVL 125 (129)
T ss_dssp ------------------TCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred ------------------CCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHh
Confidence 236799999999999999999999999999999999999999998875
No 29
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.80 E-value=2.9e-20 Score=204.95 Aligned_cols=114 Identities=22% Similarity=0.335 Sum_probs=106.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCC-CCCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMP-VMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP-~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+|||||||+.++.+++.+|+..||.|. .|.||.+|++.+....|||||||++|| +|||+++++.||+.
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir~~-------- 231 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGR-------- 231 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHHHH--------
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHhc--------
Confidence 45899999999999999999999999999 999999999999999999999999999 89999999999973
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
+++|||++|++. +...+|+++|+++||+|||++++|...|.+++
T Consensus 232 -------------------~~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l 275 (286)
T 3n0r_A 232 -------------------MDVPVIFITAFP--ERLLTGERPEPTFLITKPFQPETVKAAIGQAL 275 (286)
T ss_dssp -------------------TTCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHHHHHHHHHHHH
T ss_pred -------------------CCCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 169999999985 45778999999999999999999999998875
No 30
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.80 E-value=5.8e-19 Score=173.24 Aligned_cols=122 Identities=25% Similarity=0.527 Sum_probs=109.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
...+||||||++..+..++.+|+..||.|..+.++.+|++.+....||+||+|+.||+|||+++++.||.....
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~------ 86 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQAS------ 86 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHT------
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhc------
Confidence 45799999999999999999999999999999999999999999999999999999999999999999964211
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+....+...+|+++|+++||.||++.++|...|.++.
T Consensus 87 ----------------~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 87 ----------------GMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp ----------------TCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC
T ss_pred ----------------cCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHH
Confidence 235689999999999999999999999999999999999999998764
No 31
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.79 E-value=2.6e-19 Score=183.73 Aligned_cols=117 Identities=16% Similarity=0.300 Sum_probs=109.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+.+||||||++..+..++.+|+..||.|..|.||.+|++.+....||+||+|+.||+|||+++++.||+.
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~--------- 76 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDL--------- 76 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHH---------
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhc---------
Confidence 35689999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|++.+.+...+|+.+|+++||.||++.++|...|++.
T Consensus 77 -----------------~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 122 (184)
T 3rqi_A 77 -----------------QPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTN 122 (184)
T ss_dssp -----------------CTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTT
T ss_pred -----------------CCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHH
Confidence 2568999999999999999999999999999999999999988764
No 32
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.78 E-value=1.4e-18 Score=167.57 Aligned_cols=125 Identities=15% Similarity=0.154 Sum_probs=96.6
Q ss_pred cCHHHHHHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchh
Q 039716 443 FRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGL 522 (1002)
Q Consensus 443 ~~l~~li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~ 522 (1002)
+++.+++..+...+. .+++.+........+.....+...|.+|+.||++||+||++.|.|.|.+...
T Consensus 2 v~l~~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~~---------- 68 (128)
T 3ehg_A 2 IRLKDELINIKQILE---AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQAKTCRVDIQQL---------- 68 (128)
T ss_dssp CCHHHHHHHHHHHHH---HTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEE----------
T ss_pred ccHHHHHHHHHHHHH---HcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEe----------
Confidence 455566655544433 2455555555443333345688999999999999999999888888776431
Q ss_pred hhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCC
Q 039716 523 KQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIG 602 (1002)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiG 602 (1002)
..++.|+|.|+|+|
T Consensus 69 ------------------------------------------------------------------~~~~~i~V~D~G~G 82 (128)
T 3ehg_A 69 ------------------------------------------------------------------WKEVVITVSDDGTF 82 (128)
T ss_dssp ------------------------------------------------------------------TTEEEEEEEESSCC
T ss_pred ------------------------------------------------------------------CCEEEEEEEECCcC
Confidence 11488999999999
Q ss_pred CCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 603 IPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 603 I~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
|+++.+ +|+||||+||+++++.|||+|+++|.+ ||+|+++||+.
T Consensus 83 i~~~~~------------------~g~GlGL~~~~~~~~~~gG~i~~~s~~--Gt~~~i~lP~~ 126 (128)
T 3ehg_A 83 KGEENS------------------FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPNN 126 (128)
T ss_dssp CSCSSC------------------CCTTSHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC-
T ss_pred cCcccC------------------CCCCccHHHHHHHHHHcCCEEEEEeCC--CEEEEEEEecC
Confidence 998765 489999999999999999999999998 99999999974
No 33
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.78 E-value=1.3e-18 Score=188.32 Aligned_cols=119 Identities=38% Similarity=0.622 Sum_probs=112.0
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+.+||||||++.++..+..+|+..||.|..+.||.+|++.+....||+||||+.||+|||+++++.||+..
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~------- 199 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLG------- 199 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHH-------
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcC-------
Confidence 3467999999999999999999999999999999999999999999999999999999999999999999742
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
+.+|||++|++...+...+|+++|+++||.||++.++|...|++++
T Consensus 200 -------------------~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 245 (254)
T 2ayx_A 200 -------------------LTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYA 245 (254)
T ss_dssp -------------------CCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHH
T ss_pred -------------------CCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999998874
No 34
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.78 E-value=4.9e-18 Score=162.15 Aligned_cols=117 Identities=19% Similarity=0.239 Sum_probs=109.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..++.+|...||.+..+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~---------- 72 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDL---------- 72 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHT----------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhc----------
Confidence 3589999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++++|+++||.||++.++|...|++.+
T Consensus 73 ----------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 119 (126)
T 1dbw_A 73 ----------------KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERAS 119 (126)
T ss_dssp ----------------TCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ----------------CCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHH
Confidence 25689999999999999999999999999999999999999998753
No 35
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.77 E-value=3.7e-18 Score=162.40 Aligned_cols=116 Identities=24% Similarity=0.405 Sum_probs=109.4
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..||.+..+.++.+|+..+....||+||+|+.||+++|+++++.||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~----------- 72 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVI----------- 72 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHH-----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHh-----------
Confidence 489999999999999999999999999999999999999998899999999999999999999999963
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++++|+++||.||++.++|...|++++
T Consensus 73 ---------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1srr_A 73 ---------------DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119 (124)
T ss_dssp ---------------CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHS
T ss_pred ---------------CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHh
Confidence 25689999999999999999999999999999999999999998865
No 36
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.77 E-value=7.9e-18 Score=159.04 Aligned_cols=114 Identities=26% Similarity=0.396 Sum_probs=107.7
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||||||++..+..++.+|+..||.|..+.++.+|+..+....||+||+|+.||+++|+++++.||..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~------------ 69 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSN------------ 69 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHT------------
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhc------------
Confidence 79999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+........+++++|+++|+.||++.++|...|++.
T Consensus 70 --------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 115 (121)
T 2pl1_A 70 --------------DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQAL 115 (121)
T ss_dssp --------------TCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred --------------CCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHH
Confidence 2568999999999999999999999999999999999999998865
No 37
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.77 E-value=5.2e-18 Score=168.47 Aligned_cols=120 Identities=28% Similarity=0.432 Sum_probs=111.4
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+.+||||||++..+..++.+|+..||.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~-------- 77 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP-------- 77 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST--------
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC--------
Confidence 356899999999999999999999999999999999999999999999999999999999999999999732
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+....+...+|+++|+++||.||++..+|...|++++
T Consensus 78 ----------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 125 (154)
T 3gt7_A 78 ----------------DLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLL 125 (154)
T ss_dssp ----------------TTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHH
T ss_pred ----------------CcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 236799999999999999999999999999999999999999998754
No 38
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.77 E-value=5e-18 Score=163.80 Aligned_cols=116 Identities=20% Similarity=0.343 Sum_probs=108.8
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~----------- 72 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKL----------- 72 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHH-----------
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhh-----------
Confidence 589999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++++|+++||.||++.++|...|++.+
T Consensus 73 ---------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 119 (132)
T 3crn_A 73 ---------------RPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKL 119 (132)
T ss_dssp ---------------CTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ---------------CCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHH
Confidence 24689999999999999999999999999999999999999987653
No 39
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.77 E-value=2.4e-18 Score=165.55 Aligned_cols=125 Identities=19% Similarity=0.286 Sum_probs=98.5
Q ss_pred eecCHHHHHHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccc
Q 039716 441 AKFRPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKE 520 (1002)
Q Consensus 441 ~~~~l~~li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~ 520 (1002)
..+++.+++..++..+ ..+.+.+...+....+.....|+..|.||+.||++||+||++.|.|.|.+..
T Consensus 3 ~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~i~i~~~~--------- 70 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF---ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAASTLTVRVKV--------- 70 (129)
T ss_dssp --CCHHHHHHHHHHHH---SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEEE---------
T ss_pred ccccHHHHHHHHHHHH---hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE---------
Confidence 4678888888887766 3344555554444433333456899999999999999999988888877642
Q ss_pred hhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecC
Q 039716 521 GLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTG 600 (1002)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG 600 (1002)
... +.|.|.|+|
T Consensus 71 -------------------------------------------------------------------~~~-~~i~v~D~G 82 (129)
T 3zxo_A 71 -------------------------------------------------------------------DDD-LCIEVTDNG 82 (129)
T ss_dssp -------------------------------------------------------------------SSE-EEEEEEECC
T ss_pred -------------------------------------------------------------------cCC-EEEEEecCC
Confidence 112 678999999
Q ss_pred CCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecC-CceEEEEEEeCC
Q 039716 601 IGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVH-CGSTFTFILPYQ 666 (1002)
Q Consensus 601 iGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g-~GTtF~~~LP~~ 666 (1002)
+||+++. +||||+||+++++.|||+|++.|.++ +|++|+++||+.
T Consensus 83 ~gi~~~~---------------------~GlGL~i~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 83 RGMPDEF---------------------TGSGLTNLRQRAEQAGGEFTLASMPGASGTVLRWSAPLS 128 (129)
T ss_dssp CCCTTTT---------------------CSHHHHHHHHHHHHTTCEEEEEECTTTCCEEEEEEEESC
T ss_pred CCCCccc---------------------CCcCHHHHHHHHHHcCCEEEEeeCCCCCcEEEEEEecCC
Confidence 9999765 69999999999999999999999999 899999999974
No 40
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.77 E-value=2.9e-18 Score=186.31 Aligned_cols=119 Identities=17% Similarity=0.344 Sum_probs=109.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCC-CcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~-~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
..+||||||++.++..+...|+..|+.|..+.||.+|++.+.... ||+||+|+.||+|||+++++.||+..
T Consensus 124 ~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~-------- 195 (259)
T 3luf_A 124 QIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERY-------- 195 (259)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHC--------
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcc--------
Confidence 458999999999999999999999999999999999999998775 89999999999999999999999742
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
....+|||++|++...+...+|+++|+++||.||++.++|...|++.+
T Consensus 196 ----------------~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l 243 (259)
T 3luf_A 196 ----------------SKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNL 243 (259)
T ss_dssp ----------------CTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ----------------CCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHH
Confidence 234689999999999999999999999999999999999999988754
No 41
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.76 E-value=5.8e-18 Score=162.41 Aligned_cols=118 Identities=25% Similarity=0.426 Sum_probs=104.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+.+||||||++..+..++.+|+..|+.+..+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~--------- 76 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNR--------- 76 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHT---------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhc---------
Confidence 45699999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCC-ChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV-TFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~-~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++.+|+++||.||+ +.+.|...|++.+
T Consensus 77 -----------------~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l 124 (130)
T 3eod_A 77 -----------------GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 (130)
T ss_dssp -----------------TCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHH
T ss_pred -----------------CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999 8999999998764
No 42
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.76 E-value=4.6e-18 Score=161.35 Aligned_cols=118 Identities=27% Similarity=0.522 Sum_probs=103.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..||.+..+.++.+|+..+....||+||+|+.||+++|+++++.||+..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~---------- 71 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDD---------- 71 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHST----------
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCc----------
Confidence 4799999999999999999999999999999999999999988999999999999999999999999631
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+....+....++++|+++||.||++.++|...|++.+
T Consensus 72 --------------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1mb3_A 72 --------------DLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 119 (124)
T ss_dssp --------------TTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHH
T ss_pred --------------cccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 235799999999999999999999999999999999999999998754
No 43
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.76 E-value=6.7e-18 Score=159.45 Aligned_cols=116 Identities=26% Similarity=0.386 Sum_probs=108.3
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
.+||||||++..+..++.+|+..||. +..+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~---------- 72 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKI---------- 72 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHH----------
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhh----------
Confidence 48999999999999999999999999 5689999999999999999999999999999999999999963
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++++|+++|+.||++.++|...|++.+
T Consensus 73 ----------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 73 ----------------DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp ----------------CTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred ----------------CCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 25689999999999999999999999999999999999999998765
No 44
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.76 E-value=1.2e-17 Score=159.59 Aligned_cols=119 Identities=29% Similarity=0.531 Sum_probs=109.1
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCC-eEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGH-SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~-~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
..+||||||++..+..++.+|+..|+ .+..+.++.+|++.+....||+||+|+.||+++|+++++.||+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~-------- 75 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXX-------- 75 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC----------
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhc--------
Confidence 45799999999999999999999999 799999999999999999999999999999999999999999632
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+....+...+++++|+++|+.||++.++|...|++.+
T Consensus 76 ----------------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 76 ----------------AMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp ----------------CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ----------------ccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHH
Confidence 235789999999999999999999999999999999999999988753
No 45
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.76 E-value=9.8e-18 Score=166.05 Aligned_cols=119 Identities=20% Similarity=0.342 Sum_probs=111.5
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
....+||||||++..+..+..+|+..||.|..+.++.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~-------- 83 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQ-------- 83 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHH--------
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhH--------
Confidence 346799999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcC-CCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG-MDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG-~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++.+| +++||.||++..+|...|++.+
T Consensus 84 ------------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l 131 (153)
T 3hv2_A 84 ------------------YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQAL 131 (153)
T ss_dssp ------------------CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHH
T ss_pred ------------------CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999999 9999999999999999998754
No 46
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.76 E-value=7e-18 Score=181.85 Aligned_cols=118 Identities=25% Similarity=0.382 Sum_probs=110.7
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
...+||||||++..+..++.+|+..||.|..|.||.+|++.+....||+||+|+.||+|||+++++.||+.
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~--------- 92 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRAD--------- 92 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHT---------
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 45799999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+..+.+...+|+++|+++||.||++.++|...|+..+
T Consensus 93 -----------------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~ 139 (250)
T 3r0j_A 93 -----------------GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVIL 139 (250)
T ss_dssp -----------------TCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHH
T ss_pred -----------------CCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999987653
No 47
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.76 E-value=9.2e-18 Score=165.67 Aligned_cols=119 Identities=24% Similarity=0.318 Sum_probs=110.3
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcC--CeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCc
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLG--HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNW 934 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g--~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~ 934 (1002)
....+||||||++..+..+..+|+..| +.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~------ 91 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSE------ 91 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHT------
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHh------
Confidence 446799999999999999999999887 789999999999999999999999999999999999999999962
Q ss_pred hhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 935 DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+..+.+...+++++|+++||.||++.++|..+|++++
T Consensus 92 --------------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 92 --------------------KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVL 138 (150)
T ss_dssp --------------------TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHH
T ss_pred --------------------CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999998764
No 48
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.75 E-value=1.7e-17 Score=157.08 Aligned_cols=115 Identities=27% Similarity=0.403 Sum_probs=107.8
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..||.+..+.++.+|+..+....||+||+|+.||+++|+++++.||+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~------------ 70 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRE------------ 70 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHT------------
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHh------------
Confidence 47999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+........+++++|+++|+.||++.++|...|++.+
T Consensus 71 ---------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 71 ---------------RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp ---------------TCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ---------------cCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 14589999999999999999999999999999999999999988753
No 49
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.75 E-value=4.3e-18 Score=162.64 Aligned_cols=118 Identities=24% Similarity=0.395 Sum_probs=108.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~--------- 73 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALP--------- 73 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSC---------
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhh---------
Confidence 35899999999999999999999999999999999999999999999999999999999999999999742
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+....+. ..++..|+++||.||++.++|...++.+.
T Consensus 74 ---------------~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 74 ---------------MEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp ---------------CSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred ---------------ccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhh
Confidence 246799999999998888 88999999999999999999999998764
No 50
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.75 E-value=1.7e-17 Score=160.39 Aligned_cols=119 Identities=27% Similarity=0.355 Sum_probs=110.4
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCC-CcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~-~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
...+||||||++..+..++.+|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.||+..
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~------- 78 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE------- 78 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST-------
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC-------
Confidence 3568999999999999999999999999999999999999998777 99999999999999999999999631
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++++|+++||.||++.++|...|++++
T Consensus 79 ------------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (136)
T 3hdv_A 79 ------------------RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKEL 125 (136)
T ss_dssp ------------------TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------------CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHh
Confidence 36799999999999999999999999999999999999999998864
No 51
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.75 E-value=1.5e-17 Score=157.82 Aligned_cols=115 Identities=22% Similarity=0.353 Sum_probs=107.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~---------- 72 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQ---------- 72 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHH----------
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhC----------
Confidence 3589999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
+.+|||++|+........+++++|+++|+.||++.++|...|++.
T Consensus 73 -----------------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 117 (123)
T 1xhf_A 73 -----------------ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117 (123)
T ss_dssp -----------------CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred -----------------CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999988765
No 52
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.75 E-value=9.4e-18 Score=160.56 Aligned_cols=119 Identities=27% Similarity=0.440 Sum_probs=109.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCC-eEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGH-SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~-~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
..+||||||++..+..++.+|+..|| .+..+.++.+|++.+....||+||+|+.||+++|+++++.||+..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~-------- 77 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANP-------- 77 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCT--------
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCc--------
Confidence 45899999999999999999999999 799999999999999999999999999999999999999999631
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+....+...+++++|+++|+.||++.++|...|++.+
T Consensus 78 ----------------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (129)
T 1p6q_A 78 ----------------ATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVF 125 (129)
T ss_dssp ----------------TSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHH
T ss_pred ----------------cccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 235799999999999999999999999999999999999999998753
No 53
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.75 E-value=5.1e-18 Score=165.19 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=111.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHh-cCCeEEEEcCHHHHHHHHHc-CCCcEEEEcCCCC-CCCHHHHHHHHhccccCCCch
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQ-LGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMP-VMDGLKATRLIRSFEDTGNWD 935 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~-~g~~v~~a~~G~eAl~~~~~-~~~DlIlmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 935 (1002)
..+||||||++..+..++.+|+. .||.|..+.++.+|++.+.. ..||+||+|+.|| +++|+++++.||+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~------ 77 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNS------ 77 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSG------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCc------
Confidence 46899999999999999999999 99999999999999999999 9999999999999 999999999999732
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+....+...+++++|+++||.||++.++|...|++++
T Consensus 78 ------------------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (140)
T 3lua_A 78 ------------------RTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVL 125 (140)
T ss_dssp ------------------GGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHH
T ss_pred ------------------ccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 236799999999999999999999999999999999999999998764
No 54
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.75 E-value=1.1e-17 Score=166.79 Aligned_cols=118 Identities=25% Similarity=0.417 Sum_probs=111.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEE-EEcCHHHHHHHHHcC--CCcEEEEcCCCCCCCHHHHHHHHhccccCCCc
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSID-VVNNGVEAVHAVQCQ--NYDLILMDVCMPVMDGLKATRLIRSFEDTGNW 934 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~-~a~~G~eAl~~~~~~--~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~ 934 (1002)
...+||||||++..+..++.+|+..||.+. .+.++.+|++.+... .|||||+|+.||+++|+++++.||+.
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~------ 108 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEF------ 108 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHH------
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhh------
Confidence 456999999999999999999999999988 999999999999988 89999999999999999999999973
Q ss_pred hhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 935 DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+..+.+...+|+++|+++||.||++.++|...|++++
T Consensus 109 --------------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 109 --------------------DKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp --------------------CTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred --------------------CCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 25689999999999999999999999999999999999999999876
No 55
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.75 E-value=1.8e-17 Score=163.87 Aligned_cols=118 Identities=20% Similarity=0.481 Sum_probs=108.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCC--eEEEEcCHHHHHHHHH---------cCCCcEEEEcCCCCCCCHHHHHHHHhc
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGH--SIDVVNNGVEAVHAVQ---------CQNYDLILMDVCMPVMDGLKATRLIRS 927 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~--~v~~a~~G~eAl~~~~---------~~~~DlIlmDi~MP~mdG~e~~~~IR~ 927 (1002)
+.+||||||++..+..++.+|+..|+ .|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 46899999999999999999999998 8999999999999995 678999999999999999999999997
Q ss_pred cccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 928 FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.. ..+.+|||++|+....+...+++++|+++||.||++.++|...|+++
T Consensus 84 ~~------------------------~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 84 NP------------------------HTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQL 132 (152)
T ss_dssp ST------------------------TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred cc------------------------cccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 32 24679999999999999999999999999999999999999999875
No 56
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.75 E-value=1.6e-17 Score=156.58 Aligned_cols=115 Identities=27% Similarity=0.444 Sum_probs=107.6
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|...||.+..+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~----------- 70 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKT----------- 70 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHH-----------
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhC-----------
Confidence 379999999999999999999999999999999999999998899999999999999999999999952
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
+.+|||++|+.........++++|+++|+.||++.++|...|++.+
T Consensus 71 ----------------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (120)
T 2a9o_A 71 ----------------SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALL 116 (120)
T ss_dssp ----------------CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ----------------CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999988753
No 57
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.75 E-value=4.3e-18 Score=165.10 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=109.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCC--CCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV--MDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~--mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+....||+||+|+.||+ ++|+++++.||+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~-------- 77 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKR-------- 77 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHT--------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhC--------
Confidence 468999999999999999999999999999999999999999999999999999999 9999999999973
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+|+++|+++||.||++.++|...|++.+
T Consensus 78 ------------------~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~ 124 (136)
T 3kto_A 78 ------------------GFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQII 124 (136)
T ss_dssp ------------------TCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHH
T ss_pred ------------------CCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999998753
No 58
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.75 E-value=2e-17 Score=163.16 Aligned_cols=118 Identities=22% Similarity=0.387 Sum_probs=107.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCC--eEEEEcCHHHHHHHHHc-------CCCcEEEEcCCCCCCCHHHHHHHHhccc
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGH--SIDVVNNGVEAVHAVQC-------QNYDLILMDVCMPVMDGLKATRLIRSFE 929 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~--~v~~a~~G~eAl~~~~~-------~~~DlIlmDi~MP~mdG~e~~~~IR~~~ 929 (1002)
..+||||||++..+..++.+|+..|+ .|..+.+|.+|++.+.. ..||+||+|+.||+|||+++++.||+..
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~ 87 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc
Confidence 45899999999999999999999887 78999999999999975 5799999999999999999999999631
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+++|||++|+....+...+++++|+++||.||++.++|...|++.
T Consensus 88 ------------------------~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 134 (149)
T 1i3c_A 88 ------------------------DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGI 134 (149)
T ss_dssp ------------------------TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred ------------------------CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 23579999999999999999999999999999999999999988764
No 59
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.74 E-value=6.9e-18 Score=164.08 Aligned_cols=119 Identities=23% Similarity=0.377 Sum_probs=109.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+..
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~--------- 76 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDS--------- 76 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSG---------
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCc---------
Confidence 46899999999999999999999999999999999999999999999999999999999999999999632
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHH-HHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE-ECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~-~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+........ .++.+|+++||.||++.++|...|++.+
T Consensus 77 ---------------~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l 125 (140)
T 3grc_A 77 ---------------RTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAI 125 (140)
T ss_dssp ---------------GGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHH
T ss_pred ---------------ccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 23679999999998887777 8999999999999999999999998754
No 60
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.74 E-value=1.7e-17 Score=160.23 Aligned_cols=116 Identities=22% Similarity=0.360 Sum_probs=107.3
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcC--CeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLG--HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g--~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+||||||++..+..++.+|+..| +.+..+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~--------- 74 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKK--------- 74 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHT---------
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHH---------
Confidence 479999999999999999999887 567889999999999998899999999999999999999999962
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++.+|+++||.||++.++|...|++.+
T Consensus 75 -----------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 121 (133)
T 3b2n_A 75 -----------------HLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVN 121 (133)
T ss_dssp -----------------TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHH
T ss_pred -----------------CCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999998753
No 61
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.74 E-value=4.2e-18 Score=167.04 Aligned_cols=119 Identities=12% Similarity=0.196 Sum_probs=110.1
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcC-CeEEEEcCHHHHHHHHHc--CCCcEEEEcCCCCCCCHHHHHHHHhccccCCC
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQC--QNYDLILMDVCMPVMDGLKATRLIRSFEDTGN 933 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g-~~v~~a~~G~eAl~~~~~--~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~ 933 (1002)
..+.+||||||++..+..+..+|+..| |.|..+.++.+|+..+.. ..||+||+|+.||+++|+++++.||..
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~----- 92 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRL----- 92 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHH-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHh-----
Confidence 456799999999999999999999999 999999999999988765 899999999999999999999999973
Q ss_pred chhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 934 WDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+|+.+|+++||.||++.++|...|++.+
T Consensus 93 ---------------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 139 (146)
T 4dad_A 93 ---------------------HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAA 139 (146)
T ss_dssp ---------------------CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHH
T ss_pred ---------------------CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHH
Confidence 25689999999999999999999999999999999999999998764
No 62
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=1.2e-17 Score=162.54 Aligned_cols=116 Identities=25% Similarity=0.367 Sum_probs=108.6
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~----------- 73 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQN----------- 73 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHT-----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhc-----------
Confidence 379999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++++|+++||.||++.++|...|++.+
T Consensus 74 ---------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~ 120 (137)
T 3cfy_A 74 ---------------DIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHL 120 (137)
T ss_dssp ---------------TCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ---------------CCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHH
Confidence 25689999999999999999999999999999999999999987653
No 63
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.74 E-value=1.3e-17 Score=161.54 Aligned_cols=118 Identities=22% Similarity=0.256 Sum_probs=110.6
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
...+||||||++..+..++.+|+..|+.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~--------- 76 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAG--------- 76 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHT---------
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 35689999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++.+|+++||.||++.++|...|++++
T Consensus 77 -----------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 77 -----------------GAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp -----------------TCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHH
T ss_pred -----------------CCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998764
No 64
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.74 E-value=1.9e-17 Score=160.79 Aligned_cols=115 Identities=27% Similarity=0.427 Sum_probs=108.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..+..+|+..|+.|..+.++.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~---------- 73 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNV---------- 73 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTT----------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccC----------
Confidence 4589999999999999999999999999999999999999999999999999999999999999999952
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+|||++|+....+...+++++|+++||.||++.++|...|++.
T Consensus 74 -----------------~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~ 118 (136)
T 2qzj_A 74 -----------------TTCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAI 118 (136)
T ss_dssp -----------------CCCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred -----------------CCCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 258999999999999999999999999999999999999998765
No 65
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.74 E-value=2.6e-17 Score=160.66 Aligned_cols=122 Identities=18% Similarity=0.315 Sum_probs=111.7
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCC--eEEEEcCHHHHHHHHHc-----CCCcEEEEcCCCCCCCHHHHHHHHhcccc
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGH--SIDVVNNGVEAVHAVQC-----QNYDLILMDVCMPVMDGLKATRLIRSFED 930 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~--~v~~a~~G~eAl~~~~~-----~~~DlIlmDi~MP~mdG~e~~~~IR~~~~ 930 (1002)
...+||||||++..+..++.+|+..|+ .|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||+...
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 356899999999999999999999999 89999999999999998 89999999999999999999999997321
Q ss_pred CCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcC-CCEEEeCCCChHHHHHHHHhhc
Q 039716 931 TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG-MDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG-~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
...+.+|||++|+....+...+++.+| +++||.||++.++|..+|++++
T Consensus 88 ----------------------~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~ 137 (146)
T 3ilh_A 88 ----------------------PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVL 137 (146)
T ss_dssp ----------------------GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHH
T ss_pred ----------------------hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHH
Confidence 013678999999999999999999999 9999999999999999999874
No 66
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.74 E-value=1.7e-18 Score=167.61 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=111.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcC-CeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLG-HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g-~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
...+||||||++..+..++.+|+..| |.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+..
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~------- 85 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALW------- 85 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGG-------
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhC-------
Confidence 35689999999999999999999999 9999999999999999999999999999999999999999999732
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
+.+|||++|+....+...+++++|+++||.||++.++|...|++++
T Consensus 86 -------------------~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 86 -------------------ATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp -------------------TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC
T ss_pred -------------------CCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999875
No 67
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.74 E-value=2.6e-17 Score=160.98 Aligned_cols=119 Identities=26% Similarity=0.507 Sum_probs=110.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCe--EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHS--IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~--v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+||||||++..+..++.+|+..|+. |..+.++.+|++.+....||+||+|+.||+++|+++++.||+..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~------- 77 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPG------- 77 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSS-------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcc-------
Confidence 468999999999999999999999987 88999999999999999999999999999999999999999632
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCC-ChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV-TFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~-~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+..+.+...+|+++|+++||.||+ +.++|...|++.+
T Consensus 78 -----------------~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 78 -----------------ANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp -----------------TTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred -----------------cccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 24679999999999999999999999999999999 9999999887653
No 68
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.74 E-value=3.7e-17 Score=159.52 Aligned_cols=117 Identities=21% Similarity=0.385 Sum_probs=109.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHH--cCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQ--CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~--~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~-------- 74 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKI-------- 74 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHH--------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 458999999999999999999999999999999999999998 6799999999999999999999999963
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++++|+++||.||++.++|..+|++.+
T Consensus 75 ------------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 121 (143)
T 3jte_A 75 ------------------TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAI 121 (143)
T ss_dssp ------------------CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------------CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHH
Confidence 35699999999999999999999999999999999999999998753
No 69
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.73 E-value=5.6e-18 Score=193.17 Aligned_cols=115 Identities=20% Similarity=0.340 Sum_probs=109.1
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||||||++..+..++.+|+..||.|..|.||.+|++.+....||+||+|+.||+|||+++++.||+.
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllDi~mP~~dG~ell~~lr~~------------ 69 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIKEN------------ 69 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBCCSEEEEESEETTEETTTHHHHHHHH------------
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhh------------
Confidence 79999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|++.+.+...+|+++|+++||.||++.++|...|++.+
T Consensus 70 --------------~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l 116 (368)
T 3dzd_A 70 --------------SPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAF 116 (368)
T ss_dssp --------------CTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHH
T ss_pred --------------CCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 25689999999999999999999999999999999999999988753
No 70
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.73 E-value=4.8e-17 Score=157.24 Aligned_cols=119 Identities=23% Similarity=0.388 Sum_probs=109.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCC--eEEEEcCHHHHHHHHHc-------CCCcEEEEcCCCCCCCHHHHHHHHhccc
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGH--SIDVVNNGVEAVHAVQC-------QNYDLILMDVCMPVMDGLKATRLIRSFE 929 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~--~v~~a~~G~eAl~~~~~-------~~~DlIlmDi~MP~mdG~e~~~~IR~~~ 929 (1002)
+.+||||||++..+..++.+|+..|+ .|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||+..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 45899999999999999999999998 89999999999999987 7899999999999999999999999732
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+....+...+++++|+++|+.||++.++|...|++++
T Consensus 82 ------------------------~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 82 ------------------------TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp ------------------------TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred ------------------------ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHH
Confidence 125689999999999999999999999999999999999999887653
No 71
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.73 E-value=2.4e-17 Score=158.61 Aligned_cols=117 Identities=23% Similarity=0.288 Sum_probs=103.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
+.+||||||++..+..++.+|+ .|+.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~--------- 73 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEP--------- 73 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHST---------
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCC---------
Confidence 4689999999999999999999 899999999999999999999999999999999999999999999732
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+...... ..++.+|+++||.||++.++|...|++.+
T Consensus 74 ---------------~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 120 (133)
T 3nhm_A 74 ---------------TLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALL 120 (133)
T ss_dssp ---------------TTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred ---------------ccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHH
Confidence 235799999999988877 89999999999999999999999998764
No 72
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.73 E-value=3.6e-17 Score=161.59 Aligned_cols=119 Identities=17% Similarity=0.264 Sum_probs=109.4
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcCCe--EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCc
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLGHS--IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNW 934 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g~~--v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~ 934 (1002)
..+.+||||||++..+..++.+|+..|+. |..+.++.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~------ 86 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSY------ 86 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHT------
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhc------
Confidence 45679999999999999999999999954 6689999999999999999999999999999999999999963
Q ss_pred hhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 935 DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+..+.+...+++++|+++||.||++.++|..+|++++
T Consensus 87 --------------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 133 (152)
T 3eul_A 87 --------------------ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 133 (152)
T ss_dssp --------------------TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHH
T ss_pred --------------------CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998753
No 73
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.73 E-value=3.7e-17 Score=158.91 Aligned_cols=118 Identities=26% Similarity=0.423 Sum_probs=106.5
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+....||+||+|+.||+++|+++++.||...
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~---------- 73 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDP---------- 73 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHST----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCc----------
Confidence 5899999999999999999999999999999999999999999999999999999999999999999632
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+.........++.+|+++||.||++.++|...|++.+
T Consensus 74 --------------~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~ 121 (138)
T 3c3m_A 74 --------------ATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVL 121 (138)
T ss_dssp --------------TTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHH
T ss_pred --------------ccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHH
Confidence 235799999999887666666777889999999999999999998753
No 74
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.73 E-value=1e-17 Score=161.49 Aligned_cols=116 Identities=19% Similarity=0.307 Sum_probs=106.1
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
.+||||||++..+..++.+|++.|+.+. .+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~---------- 71 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKR---------- 71 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHT----------
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhc----------
Confidence 4899999999999999999999999987 89999999999999999999999999999999999999962
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++++|+++||.||++.++|..+|++.+
T Consensus 72 ----------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 118 (134)
T 3f6c_A 72 ----------------QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAK 118 (134)
T ss_dssp ----------------TCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHH
T ss_pred ----------------CCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998754
No 75
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.73 E-value=3.9e-17 Score=157.78 Aligned_cols=115 Identities=23% Similarity=0.400 Sum_probs=107.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..+..+|...||.|..+.++.+|+..+....||+||+|+.||+++|+++++.||+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~----------- 72 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQ----------- 72 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHT-----------
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcC-----------
Confidence 489999999999999999999999999999999999999998899999999999999999999999963
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+.........++++|+++||.||++.++|...|++.
T Consensus 73 ---------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (136)
T 1mvo_A 73 ---------------KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAI 118 (136)
T ss_dssp ---------------TCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred ---------------CCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHH
Confidence 2468999999999988899999999999999999999999998865
No 76
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.72 E-value=2.9e-17 Score=156.90 Aligned_cols=122 Identities=20% Similarity=0.282 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHHHHhhcceeccccCCCCCeeEEccHHHHHHHHHHHHhhhhhcCCCCeeEEEEEecCCCCcccchhh
Q 039716 444 RPREVVKHVLQTAAASLQKILMLEGDIADDVPIEVIGDVLRIRQILTNLISNAIKFTPEGKVGIKLYVVPEPPFAKEGLK 523 (1002)
Q Consensus 444 ~l~~li~~v~~~~~~~~~k~i~l~~~i~~~~p~~v~gD~~rL~QIL~NLlsNAIKfT~~G~I~I~v~~~~~~~~~~~~~~ 523 (1002)
++.+.+..++..+ ....+.+...+....+.....+...|.+|+.||++||+||++.|.|.|.+..
T Consensus 2 ~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~i~i~~~~------------ 66 (124)
T 3zxq_A 2 GLRHRLDKVIDQL---AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANATSLAINVSV------------ 66 (124)
T ss_dssp CHHHHHHHHHHHH---TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEEEE------------
T ss_pred cHHHHHHHHHHHH---HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEEe------------
Confidence 4555666665555 2233444444433333223346889999999999999999998888777642
Q ss_pred hhhhhhhcchhhhhhhccCCCCCccCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCC
Q 039716 524 QKSKAYQSATDAVKEEKHQPKSQTASDQNGFHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGI 603 (1002)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI 603 (1002)
... +.|+|.|+|+||
T Consensus 67 ----------------------------------------------------------------~~~-~~i~v~D~G~gi 81 (124)
T 3zxq_A 67 ----------------------------------------------------------------EDD-VRVEVVDDGVGI 81 (124)
T ss_dssp ----------------------------------------------------------------EEE-EEEEEEECCCSS
T ss_pred ----------------------------------------------------------------CCC-EEEEEEECCCCC
Confidence 112 678999999999
Q ss_pred CcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCC
Q 039716 604 PENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQ 666 (1002)
Q Consensus 604 ~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~ 666 (1002)
+++. +||||++|+++++.|||+|++.|.+++||+|+++||+.
T Consensus 82 ~~~~---------------------~GlGL~~~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 123 (124)
T 3zxq_A 82 SGDI---------------------TESGLRNLRQRADDAGGEFTVENMPTGGTLLRWSAPLR 123 (124)
T ss_dssp CGGG---------------------SHHHHHHHHHHHHHHTCEEEEEECTTSSEEEEEEEECC
T ss_pred Cccc---------------------cccCHHHHHHHHHHhCCEEEEEEcCCCcEEEEEEEecC
Confidence 9865 39999999999999999999999999999999999974
No 77
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.72 E-value=6.9e-17 Score=158.07 Aligned_cols=119 Identities=24% Similarity=0.447 Sum_probs=109.5
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCC--eEEEEcCHHHHHHHHHc----------CCCcEEEEcCCCCCCCHHHHHHHH
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGH--SIDVVNNGVEAVHAVQC----------QNYDLILMDVCMPVMDGLKATRLI 925 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~--~v~~a~~G~eAl~~~~~----------~~~DlIlmDi~MP~mdG~e~~~~I 925 (1002)
...+||||||++..+..++.+|+..|+ .|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 356899999999999999999999998 89999999999999987 889999999999999999999999
Q ss_pred hccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 926 RSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 926 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
|+.. ..+.+|||++|+....+....++++|+++||.||++.++|...|+++
T Consensus 85 ~~~~------------------------~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 135 (149)
T 1k66_A 85 KQDE------------------------VLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTF 135 (149)
T ss_dssp TTST------------------------TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HhCc------------------------ccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence 9631 12579999999999999999999999999999999999999988765
No 78
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.72 E-value=7.1e-17 Score=155.05 Aligned_cols=119 Identities=18% Similarity=0.368 Sum_probs=105.3
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+.+||||||++..+..++.+|++.||.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+..
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~-------- 76 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK-------- 76 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT--------
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC--------
Confidence 356899999999999999999999999999999999999999999999999999999999999999999632
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+.... ...+++++|+++||.||++.++|...|++++
T Consensus 77 ----------------~~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (132)
T 3lte_A 77 ----------------VANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLV 123 (132)
T ss_dssp ----------------CSSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHH
T ss_pred ----------------ccCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHc
Confidence 1234667777776655 7889999999999999999999999998764
No 79
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.72 E-value=5.9e-17 Score=156.76 Aligned_cols=122 Identities=24% Similarity=0.512 Sum_probs=106.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+.+||||||++..+..++.+|+..|+.|..+.+|.+|++.+.... |+||+|+.||+++|+++++.||+....
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-dlvllD~~lp~~~g~~~~~~l~~~~~~------ 78 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEH-KVVFMDVCMPGVENYQIALRIHEKFTK------ 78 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTTC-SEEEEECCSSTTTTTHHHHHHHHHHC-------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhccC-CEEEEeCCCCCCcHHHHHHHHHHhhhh------
Confidence 4568999999999999999999999999999999999999987655 999999999999999999999852110
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
...+..|||++|+........+|+++|+++||.||++.++|...|++.+
T Consensus 79 ---------------~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~ 127 (136)
T 1dcf_A 79 ---------------QRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLL 127 (136)
T ss_dssp ---------------CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ---------------ccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHh
Confidence 0012246889999999999999999999999999999999999998754
No 80
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.72 E-value=2.6e-17 Score=154.41 Aligned_cols=114 Identities=31% Similarity=0.443 Sum_probs=104.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..|+.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~----------- 70 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKK----------- 70 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHH-----------
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHcc-----------
Confidence 379999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+..... ..++.+|+++|+.||++.++|...|++.+
T Consensus 71 ---------------~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 71 ---------------KKDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ---------------CTTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ---------------CCCCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 2568999999986554 67889999999999999999999998865
No 81
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.72 E-value=3.9e-17 Score=154.06 Aligned_cols=114 Identities=21% Similarity=0.366 Sum_probs=106.8
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..|+.+..+.++.+|+..+....||+||+|+.||+++|+++++.||.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~------------ 69 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQ------------ 69 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHT------------
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHh------------
Confidence 47999999999999999999999999999999999999998889999999999999999999999994
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+........+++++|+++|+.||++.++|...|++.
T Consensus 70 ---------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 115 (121)
T 1zh2_A 70 ---------------WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVA 115 (121)
T ss_dssp ---------------TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHH
T ss_pred ---------------CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHH
Confidence 1458999999999999999999999999999999999999988765
No 82
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.72 E-value=2.9e-17 Score=157.68 Aligned_cols=117 Identities=21% Similarity=0.356 Sum_probs=106.5
Q ss_pred CeEEEEecCHHHHHHHHHHHHhc-CCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQL-GHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~-g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+||||||++..+..++.+|... |+.+. .+.++.+|++.+....||+||+|+.||+++|+++++.||+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~-------- 74 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGF-------- 74 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHC--------
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcC--------
Confidence 47999999999999999999987 88865 899999999999988999999999999999999999999621
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++++|+++||.||++.++|...|++.+
T Consensus 75 -----------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~ 121 (130)
T 1dz3_A 75 -----------------EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVY 121 (130)
T ss_dssp -----------------SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHH
T ss_pred -----------------CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 24579999999999999999999999999999999999999988753
No 83
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.72 E-value=1.8e-17 Score=161.54 Aligned_cols=116 Identities=28% Similarity=0.388 Sum_probs=107.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHc-CCCcEEEEcCCCCC-CCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPV-MDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~-~~~DlIlmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
+.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||. ++|+++++.||+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-------- 76 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI-------- 76 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH--------
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC--------
Confidence 4689999999999999999999999999999999999999987 78999999999995 9999999999962
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
+.+|||++|+....+...+++.+|+++||.||++.++|...|++.+
T Consensus 77 -------------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 77 -------------------SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp -------------------CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred -------------------CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 4589999999999888899999999999999999999999998754
No 84
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.72 E-value=1.1e-16 Score=155.66 Aligned_cols=120 Identities=23% Similarity=0.352 Sum_probs=110.2
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHh-cCCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCch
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQ-LGHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~-~g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~ 935 (1002)
...+||||||++..+..++.+|+. .||. |..+.++.+|++.+....||+||+|+.||+++|+++++.||...
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~------ 80 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTP------ 80 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTST------
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCc------
Confidence 356899999999999999999999 8999 99999999999999999999999999999999999999999631
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+........+++++|+++||.||++.++|...|++.+
T Consensus 81 ------------------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 128 (143)
T 3cnb_A 81 ------------------ATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLV 128 (143)
T ss_dssp ------------------TTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------------cccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHH
Confidence 246799999999999999999999999999999999999999998753
No 85
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.72 E-value=2.3e-17 Score=172.15 Aligned_cols=116 Identities=20% Similarity=0.341 Sum_probs=108.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
.++||||||++..+..+..+|+..||.|..+.+|.+|++.+....||+||+|+.||++||+++++.||..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~---------- 73 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAI---------- 73 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHT----------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 4589999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|++.+.+...+++++|+++||.||++.++|...|++.
T Consensus 74 ----------------~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~ 119 (208)
T 1yio_A 74 ----------------SDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQG 119 (208)
T ss_dssp ----------------TCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHH
T ss_pred ----------------CCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 3569999999999999999999999999999999999999988765
No 86
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.71 E-value=1.7e-17 Score=158.06 Aligned_cols=117 Identities=22% Similarity=0.277 Sum_probs=108.3
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..|+.+..+.++.+|++.+....||+||+|+.||+++|+++++.||+..
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~---------- 72 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRES---------- 72 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTST----------
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCc----------
Confidence 4799999999999999999999999999999999999999888999999999999999999999999631
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+.+|||++|+....+...+++++|+++|+.||++.++|...|++.
T Consensus 73 --------------~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~ 119 (127)
T 2jba_A 73 --------------MTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAV 119 (127)
T ss_dssp --------------TTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHH
T ss_pred --------------ccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Confidence 23579999999999888999999999999999999999999988765
No 87
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.71 E-value=5.3e-17 Score=175.18 Aligned_cols=117 Identities=23% Similarity=0.367 Sum_probs=109.7
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
...+||||||++..+..++.+|+..|+.|..+.++.+|++.+....||+||+|+.||++||+++++.||.
T Consensus 36 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~---------- 105 (249)
T 3q9s_A 36 NEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRK---------- 105 (249)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHT----------
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHc----------
Confidence 3468999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+..+.+...+|+++|+++||.||++.++|...|+.++
T Consensus 106 -----------------~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l 152 (249)
T 3q9s_A 106 -----------------NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQL 152 (249)
T ss_dssp -----------------TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred -----------------CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 14589999999999999999999999999999999999999998754
No 88
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.71 E-value=7.1e-17 Score=169.41 Aligned_cols=116 Identities=22% Similarity=0.341 Sum_probs=107.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcC-CeE-EEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLG-HSI-DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g-~~v-~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+||||||++..+..++.+|+..| +.+ ..+.+|.+|++.+....||+||+|+.||++||+++++.||+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~-------- 76 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREK-------- 76 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHS--------
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHHh--------
Confidence 4589999999999999999999875 777 789999999999999999999999999999999999999963
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+....+...+++.+|+++||.||++.++|...|++.
T Consensus 77 ------------------~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~ 122 (215)
T 1a04_A 77 ------------------SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQA 122 (215)
T ss_dssp ------------------CCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHH
T ss_pred ------------------CCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999865
No 89
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.71 E-value=7.1e-17 Score=158.27 Aligned_cols=120 Identities=23% Similarity=0.344 Sum_probs=110.6
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
...+||||||++..+..+..+|...||.|..+.++.+|+..+....||+||+|+.||+++|+++++.||...
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~-------- 78 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNP-------- 78 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTST--------
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCc--------
Confidence 356899999999999999999999999999999999999999999999999999999999999999999621
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+....+...+++++|+++||.||++..+|...|++.+
T Consensus 79 ----------------~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 126 (147)
T 2zay_A 79 ----------------QTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVL 126 (147)
T ss_dssp ----------------TTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ----------------ccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 246799999999999999999999999999999999999999988653
No 90
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.70 E-value=9.6e-17 Score=156.33 Aligned_cols=116 Identities=20% Similarity=0.351 Sum_probs=109.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+....||+||+|+ ||+++|+++++.||..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~---------- 72 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREE---------- 72 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHH----------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHH----------
Confidence 46899999999999999999999999999999999999999999999999999 9999999999999963
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++.+|+++||.||++.++|...|++.+
T Consensus 73 ----------------~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 119 (142)
T 2qxy_A 73 ----------------FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp ----------------CTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHH
T ss_pred ----------------CCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHH
Confidence 25699999999999999999999999999999999999999998753
No 91
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.70 E-value=1.7e-16 Score=157.21 Aligned_cols=118 Identities=19% Similarity=0.326 Sum_probs=109.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
...+||||||++..+..+..+|+..||.|..+.++.+|+..+....||+||+|+.||+++|+++++.||..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~--------- 76 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKS--------- 76 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHH---------
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHh---------
Confidence 45689999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcC-CCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG-MDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG-~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+........+++.+| +++||.||++..+|...|++.+
T Consensus 77 -----------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~ 124 (154)
T 2rjn_A 77 -----------------YPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGL 124 (154)
T ss_dssp -----------------CTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred -----------------CCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHH
Confidence 2569999999999999999999998 9999999999999999987653
No 92
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.70 E-value=5.4e-17 Score=158.58 Aligned_cols=115 Identities=22% Similarity=0.317 Sum_probs=99.6
Q ss_pred CeEEEEecCHHHHHHHHHHHHh--cCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQ--LGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~--~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
.+||||||++..+..+..+|.. .|+.+. .+.+|.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~-------- 74 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKL-------- 74 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHH--------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhh--------
Confidence 4799999999999999999973 688877 89999999999998999999999999999999999999963
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+....+...+++++|+++||.||++.++|...|++.
T Consensus 75 ------------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 120 (141)
T 3cu5_A 75 ------------------YPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQS 120 (141)
T ss_dssp ------------------CTTCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHH
T ss_pred ------------------CCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHH
Confidence 2568999999999888889999999999999999999999998765
No 93
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.70 E-value=4e-17 Score=188.11 Aligned_cols=116 Identities=21% Similarity=0.413 Sum_probs=104.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++.++..++.+|+..||.|..+.||.+|++.+....||+||+|++||+|||+++++.||+.
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~---------- 74 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQPDLVICDLRMPQIDGLELIRRIRQT---------- 74 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSCCSEEEECCCSSSSCTHHHHHHHHHT----------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHHhh----------
Confidence 3589999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCC-ChHHHHHHHHhh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV-TFQKLKECLEQY 1000 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~-~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|++.+.+...+|+++|+++||.||+ +.+.|...|++.
T Consensus 75 ----------------~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~ 121 (394)
T 3eq2_A 75 ----------------ASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRA 121 (394)
T ss_dssp ----------------TCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHH
T ss_pred ----------------CCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHH
Confidence 3579999999999999999999999999999999 688888777654
No 94
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.69 E-value=1.4e-16 Score=154.80 Aligned_cols=114 Identities=20% Similarity=0.265 Sum_probs=104.0
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+.. |.|..+.+|.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~----------- 69 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVRER----------- 69 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSCEEEEEEESCCSSSCHHHHHHHHHHH-----------
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHHh-----------
Confidence 47999999999999999999875 999999999999999999999999999999999999999999963
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHc-CCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFAN-GMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~a-G~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+........+++.. |+++||.||++.++|...|++.
T Consensus 70 ---------------~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 116 (139)
T 2jk1_A 70 ---------------WPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNA 116 (139)
T ss_dssp ---------------CTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred ---------------CCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHH
Confidence 256899999999988888888876 5999999999999999988764
No 95
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.69 E-value=4.3e-17 Score=158.59 Aligned_cols=118 Identities=17% Similarity=0.285 Sum_probs=99.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..+..+|+.. +.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+..
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--------- 72 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSK--------- 72 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTST---------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCc---------
Confidence 458999999999999999999988 9999999999999999999999999999999999999999999632
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+....+...+++++|+++||.||++.++|...|++++
T Consensus 73 ---------------~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 120 (140)
T 3n53_A 73 ---------------GLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHL 120 (140)
T ss_dssp ---------------TCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHH
T ss_pred ---------------ccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHH
Confidence 236799999999999999999999999999999999999999998753
No 96
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.69 E-value=1.3e-16 Score=168.44 Aligned_cols=115 Identities=22% Similarity=0.379 Sum_probs=108.6
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~----------- 71 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRES----------- 71 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHT-----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 589999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+....+....++.+|+++||.||++.++|...|+..
T Consensus 72 ---------------~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~ 117 (225)
T 1kgs_A 72 ---------------GVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRAL 117 (225)
T ss_dssp ---------------TCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHH
T ss_pred ---------------CCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHH
Confidence 2579999999999999999999999999999999999999998765
No 97
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.69 E-value=1.9e-16 Score=156.43 Aligned_cols=116 Identities=22% Similarity=0.357 Sum_probs=107.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCC-CcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-YDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~-~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
..+||||||++..+..+..+|+. |+.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.||..
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~--------- 73 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLI--------- 73 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHH---------
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhc---------
Confidence 46899999999999999999986 999999999999999998876 6999999999999999999999963
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcC-CCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANG-MDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG-~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+..+.+...+++.+| +++||.||++.++|...|.+.+
T Consensus 74 -----------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l 121 (151)
T 3kcn_A 74 -----------------SPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGI 121 (151)
T ss_dssp -----------------CSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred -----------------CCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999999 9999999999999999987653
No 98
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.69 E-value=8.4e-17 Score=167.65 Aligned_cols=115 Identities=29% Similarity=0.417 Sum_probs=106.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
..+||||||++..+..+..+|...||.|. .+.+|.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~--------- 83 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASK--------- 83 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHT---------
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhc---------
Confidence 35899999999999999999999999988 89999999999999999999999999999999999999962
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
...|||++|++...+...+++++|+++||.||++.++|...|++.
T Consensus 84 ------------------~~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~ 128 (205)
T 1s8n_A 84 ------------------RIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELA 128 (205)
T ss_dssp ------------------TCSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHH
T ss_pred ------------------CCCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Confidence 124999999999999999999999999999999999999988764
No 99
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.69 E-value=1.9e-16 Score=153.54 Aligned_cols=117 Identities=24% Similarity=0.372 Sum_probs=109.0
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCC-CCCHHHHHHHHhccccCCCch
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMP-VMDGLKATRLIRSFEDTGNWD 935 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP-~mdG~e~~~~IR~~~~~~~~~ 935 (1002)
...+||||||++..+..++.+|+..||.+. ++.++.+|+..+....||+||+|+.|| +++|+++++.||..
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~------- 80 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG------- 80 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH-------
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC-------
Confidence 457899999999999999999999999999 599999999999999999999999999 89999999999963
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
+.+|||++|+....+....++++|+++||.||++.++|...|++.+
T Consensus 81 --------------------~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 126 (140)
T 3cg0_A 81 --------------------CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAI 126 (140)
T ss_dssp --------------------SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHH
T ss_pred --------------------CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999998753
No 100
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.69 E-value=6.8e-17 Score=157.27 Aligned_cols=120 Identities=20% Similarity=0.328 Sum_probs=110.7
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
...+||||||++..+..+..+|+..||.|..+.++.+|++.+....||+||+|+.||+++|+++++.||...
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~-------- 77 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNS-------- 77 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTT--------
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhc--------
Confidence 456899999999999999999999999999999999999999999999999999999999999999999621
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+....+...+++.+|+++||.||++.++|...|++++
T Consensus 78 ----------------~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 78 ----------------LEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp ----------------CCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred ----------------ccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 246799999999998888889999999999999999999999988754
No 101
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.69 E-value=1.7e-16 Score=157.21 Aligned_cols=117 Identities=21% Similarity=0.362 Sum_probs=109.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
+.+||||||++..+..+..+|...||.|..+.++.+|+..+....||+||+|+.||+++|+++++.||..
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~---------- 72 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILAL---------- 72 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHH----------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhh----------
Confidence 4689999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+....++.+|+++||.||++..+|...|++.+
T Consensus 73 ----------------~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~ 119 (155)
T 1qkk_A 73 ----------------DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAE 119 (155)
T ss_dssp ----------------CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ----------------CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Confidence 25699999999999999999999999999999999999999987653
No 102
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.69 E-value=2e-16 Score=153.40 Aligned_cols=117 Identities=24% Similarity=0.294 Sum_probs=108.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCC-----CCCHHHHHHHHhccccCCC
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMP-----VMDGLKATRLIRSFEDTGN 933 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP-----~mdG~e~~~~IR~~~~~~~ 933 (1002)
..+||||||++..+..++.+|+..|+.|..+.++.+|++.+....||+||+|+.|| +++|+++++.||..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~----- 77 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ----- 77 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHH-----
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhh-----
Confidence 45899999999999999999999999999999999999999999999999999999 99999999999963
Q ss_pred chhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 934 WDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++++|+++||.||++.++|...|++.+
T Consensus 78 ---------------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 78 ---------------------YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp ---------------------CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred ---------------------CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998754
No 103
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.69 E-value=3.3e-16 Score=152.52 Aligned_cols=118 Identities=19% Similarity=0.361 Sum_probs=108.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCC--eEEEEcCHHHHHHHHHc------CCCcEEEEcCCCCCCCHHHHHHHHhcccc
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGH--SIDVVNNGVEAVHAVQC------QNYDLILMDVCMPVMDGLKATRLIRSFED 930 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~--~v~~a~~G~eAl~~~~~------~~~DlIlmDi~MP~mdG~e~~~~IR~~~~ 930 (1002)
..+||||||++..+..++.+|+..|+ .|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||+..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~- 85 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS- 85 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG-
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc-
Confidence 46899999999999999999999998 99999999999999987 7899999999999999999999999632
Q ss_pred CCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 931 TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+.+|||++|+....+...+++++|+++||.||++.++|..++..+
T Consensus 86 -----------------------~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~ 132 (143)
T 2qvg_A 86 -----------------------SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWIL 132 (143)
T ss_dssp -----------------------GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHH
T ss_pred -----------------------cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 12569999999999999999999999999999999999999988754
No 104
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.68 E-value=1.5e-16 Score=186.96 Aligned_cols=117 Identities=24% Similarity=0.347 Sum_probs=109.2
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++.++..++.+|+..||.|..|.+|.+|++.+....||+||+|+.||+|||+++++.||...
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~l~~~~---------- 71 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDP---------- 71 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST----------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHhcCc----------
Confidence 4799999999999999999999999999999999999999999999999999999999999999999632
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+++|||++|+..+.+...+|+++|+++||.||++..+|...|++.
T Consensus 72 --------------~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~ 118 (459)
T 1w25_A 72 --------------TTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSL 118 (459)
T ss_dssp --------------TTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHH
T ss_pred --------------ccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 23579999999999999999999999999999999999999988764
No 105
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.68 E-value=3.6e-16 Score=154.58 Aligned_cols=117 Identities=24% Similarity=0.344 Sum_probs=109.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHh-cCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQ-LGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~-~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+||||||++..+..++.+|+. .||.+. .+.++.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~-------- 76 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQW-------- 76 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHH--------
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHh--------
Confidence 46899999999999999999998 799988 89999999999999999999999999999999999999973
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++.+|+++||.||++.++|...|++++
T Consensus 77 ------------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 77 ------------------DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp ------------------CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHT
T ss_pred ------------------CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 25689999999999999999999999999999999999999998764
No 106
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.68 E-value=1.6e-16 Score=182.42 Aligned_cols=115 Identities=19% Similarity=0.413 Sum_probs=108.7
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||||||++..+..++.+|+..||.|..|.+|.+|++.+....||+||+|+.||+|||+++++.||..
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllD~~mp~~dG~ell~~lr~~------------ 69 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKER------------ 69 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHH------------
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhh------------
Confidence 79999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|++.+.+...+|+++|+++||.||++.++|...|++.+
T Consensus 70 --------------~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l 116 (387)
T 1ny5_A 70 --------------SPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAI 116 (387)
T ss_dssp --------------CTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred --------------CCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHH
Confidence 25689999999999999999999999999999999999999887653
No 107
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.68 E-value=9.8e-17 Score=154.38 Aligned_cols=116 Identities=16% Similarity=0.275 Sum_probs=106.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..++.+|+..|+.|..+.++.+|+..+... ||+||+|+.||+++|+++++.||+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~-~dlvi~D~~l~~~~g~~~~~~l~~~---------- 71 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNK-QDIIILDLMMPDMDGIEVIRHLAEH---------- 71 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCT-TEEEEEECCTTTTHHHHHHHHHHHT----------
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccC-CCEEEEeCCCCCCCHHHHHHHHHhC----------
Confidence 45899999999999999999999988999999999999988888 9999999999999999999999963
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCH-----HHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALS-----ESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~-----~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+.... +...+++.+|+++||.||++.++|...|++++
T Consensus 72 ----------------~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~ 123 (135)
T 3eqz_A 72 ----------------KSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLS 123 (135)
T ss_dssp ----------------TCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHS
T ss_pred ----------------CCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHH
Confidence 356899999999875 66777999999999999999999999999875
No 108
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.67 E-value=7.3e-16 Score=149.22 Aligned_cols=114 Identities=21% Similarity=0.336 Sum_probs=107.0
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+.+||||||++..+..++.+|+..||.|..+.++.+|+..+....||+|| ||+++|+++++.||..
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi----~~~~~g~~~~~~l~~~-------- 83 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM----VSDKNALSFVSRIKEK-------- 83 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE----ECSTTHHHHHHHHHHH--------
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE----EcCccHHHHHHHHHhc--------
Confidence 4567999999999999999999999999999999999999999999999999 9999999999999962
Q ss_pred hhhhhhcccCCCCCCCCCCC-CccEEEEcCCCCHHHHHHHHHcCCCEEEeCCC-ChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFK-RIPIIAMTANALSESAEECFANGMDSFVSKPV-TFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~-~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~-~~~~L~~~l~~~l 1001 (1002)
+ .+|||++|+....+...+++++|+++||.||+ +.++|...|++.+
T Consensus 84 -------------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 131 (137)
T 2pln_A 84 -------------------HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARL 131 (137)
T ss_dssp -------------------STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHT
T ss_pred -------------------CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHH
Confidence 3 58999999999999999999999999999999 9999999998765
No 109
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.67 E-value=1.7e-16 Score=168.47 Aligned_cols=117 Identities=21% Similarity=0.439 Sum_probs=109.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~---------- 76 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAM---------- 76 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHT----------
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhc----------
Confidence 4689999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+...+++++|+++||.||++.++|...|++.+
T Consensus 77 ----------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 123 (233)
T 1ys7_A 77 ----------------DNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALL 123 (233)
T ss_dssp ----------------TCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ----------------CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 25699999999999988899999999999999999999999988653
No 110
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.67 E-value=1.6e-16 Score=185.42 Aligned_cols=117 Identities=21% Similarity=0.343 Sum_probs=95.9
Q ss_pred EEccHHHHHHHHHHHHhhhhhcCCCC----eeEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCC
Q 039716 478 VIGDVLRIRQILTNLISNAIKFTPEG----KVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNG 553 (1002)
Q Consensus 478 v~gD~~rL~QIL~NLlsNAIKfT~~G----~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (1002)
+.+|+.+|.|||.|||.||+||+..| .|.|.+....
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~---------------------------------------- 65 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLID---------------------------------------- 65 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEE----------------------------------------
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECC----------------------------------------
Confidence 45688999999999999999999875 4666553210
Q ss_pred CCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCcccc-CcCCCcccc
Q 039716 554 FHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHA-RKYGGTGLG 632 (1002)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~-~~~~GtGLG 632 (1002)
....++.|+|.|||+||+++.++++|++|++++.... ...+|+|||
T Consensus 66 ---------------------------------~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLG 112 (471)
T 1mu5_A 66 ---------------------------------DARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLG 112 (471)
T ss_dssp ---------------------------------TTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTTT
T ss_pred ---------------------------------CcCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCceee
Confidence 0012578999999999999999999999987765422 456799999
Q ss_pred HHHHHHHHHHhCCE-EEEEeecCCce-EEEEEEeCCC
Q 039716 633 LAICKQLVELMGGR-LTVTSKVHCGS-TFTFILPYQV 667 (1002)
Q Consensus 633 LaI~k~Lve~~gG~-I~v~S~~g~GT-tF~~~LP~~~ 667 (1002)
|++|+.+++.|||. |+|.|..+.|+ +|+|+||+..
T Consensus 113 L~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~ 149 (471)
T 1mu5_A 113 VKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDI 149 (471)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECT
T ss_pred HHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccc
Confidence 99999999999999 99999999987 9999998764
No 111
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.67 E-value=1.3e-16 Score=187.95 Aligned_cols=77 Identities=22% Similarity=0.403 Sum_probs=68.1
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCcccc-CcCCCccccHHHHHHHHHHhCCE-EEEEeecCCce-EEEEEEeCCC
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHA-RKYGGTGLGLAICKQLVELMGGR-LTVTSKVHCGS-TFTFILPYQV 667 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~-~~~~GtGLGLaI~k~Lve~~gG~-I~v~S~~g~GT-tF~~~LP~~~ 667 (1002)
++.|+|.|||+||+++.++++|++|++++.... ...+|+||||++|+.++++|||. |++.|..+.|+ +|+|.||+..
T Consensus 69 ~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~ 148 (530)
T 2zbk_B 69 IYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDI 148 (530)
T ss_dssp EEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEET
T ss_pred eEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecc
Confidence 578999999999999999999999987765322 45689999999999999999999 99999999887 8999988754
No 112
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.67 E-value=1.1e-16 Score=156.69 Aligned_cols=109 Identities=29% Similarity=0.407 Sum_probs=95.1
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhc-CCeE-EEEcCHHHHHHHHHcC-CCcEEEEcCCCCCCCHHHHHHHHhccccCCC
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQL-GHSI-DVVNNGVEAVHAVQCQ-NYDLILMDVCMPVMDGLKATRLIRSFEDTGN 933 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~-g~~v-~~a~~G~eAl~~~~~~-~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~ 933 (1002)
...++||||||++..+..++.+|++. |+.+ ..+.++.+|++.+... .||+||+|+.||+++|+++++.||+.
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~----- 85 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLK----- 85 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHH-----
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhc-----
Confidence 34678999999999999999999998 8885 5899999999999988 89999999999999999999999963
Q ss_pred chhhhhhhhcccCCCCCCCCCCCCccEEEEcC--CCCHHHHHHHHHcCCCEEEeCCCChHH
Q 039716 934 WDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA--NALSESAEECFANGMDSFVSKPVTFQK 992 (1002)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa--~~~~~~~~~~~~aG~d~~l~KP~~~~~ 992 (1002)
..+|||++|+ ....+...+|+++|+++||.||++..+
T Consensus 86 ----------------------~~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~ 124 (145)
T 3kyj_B 86 ----------------------TRAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVS 124 (145)
T ss_dssp ----------------------CCCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC-
T ss_pred ----------------------CCCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHH
Confidence 1278999987 666677889999999999999999443
No 113
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.67 E-value=3.5e-16 Score=148.45 Aligned_cols=117 Identities=21% Similarity=0.345 Sum_probs=108.5
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCC-CCCHHHHHHHHhccccCCCchhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMP-VMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP-~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+....||+||+|+.|| +++|+++++.||...
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~--------- 76 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDD--------- 76 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHST---------
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCc---------
Confidence 5899999999999999999999999999999999999999999999999999999 999999999999732
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++ +....+...+++++|+++|+.||++..+|...|++.+
T Consensus 77 ---------------~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 77 ---------------DLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALI 123 (127)
T ss_dssp ---------------TTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHH
T ss_pred ---------------cccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHH
Confidence 2367999999 8888888999999999999999999999999998764
No 114
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.66 E-value=3.4e-16 Score=154.05 Aligned_cols=102 Identities=21% Similarity=0.360 Sum_probs=82.8
Q ss_pred ccHHHHHHHHHHHHhhhhhcCCC----CeeEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCCCC
Q 039716 480 GDVLRIRQILTNLISNAIKFTPE----GKVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNGFH 555 (1002)
Q Consensus 480 gD~~rL~QIL~NLlsNAIKfT~~----G~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (1002)
.|...+.+|+.||+.||+||+.. |.|.|.+...
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~------------------------------------------- 71 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE------------------------------------------- 71 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE-------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe-------------------------------------------
Confidence 58889999999999999999964 6777766421
Q ss_pred CCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHH
Q 039716 556 DKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAI 635 (1002)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI 635 (1002)
..++.|.|.|+|+||+ .++++|++|++.+. ...|+||||+|
T Consensus 72 ---------------------------------~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~----~~~~~GlGL~i 112 (145)
T 1th8_A 72 ---------------------------------DGVVHLTVRDEGVGIP--DIEEARQPLFTTKP----ELERSGMGFTI 112 (145)
T ss_dssp ---------------------------------TTEEEEEEEECSSCCS--CHHHHTCCC-----------CCCSCHHHH
T ss_pred ---------------------------------CCEEEEEEEECCCCcC--hHHHhhcccccCCC----CCCCCcchHHH
Confidence 1148899999999999 89999999997653 33589999999
Q ss_pred HHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 636 CKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 636 ~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
|+++++ .|+++|.+++||+|+++||+..
T Consensus 113 v~~~~~----~i~~~~~~~~Gt~v~~~lp~~~ 140 (145)
T 1th8_A 113 MENFMD----EVIVESEVNKGTTVYLKKHGIH 140 (145)
T ss_dssp HHHHSS----EEEEEEETTTEEEEEEEECCC-
T ss_pred HHHHHh----eEEEEeCCCCCEEEEEEEeccc
Confidence 999998 8999999999999999999864
No 115
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.65 E-value=4.7e-16 Score=166.10 Aligned_cols=115 Identities=24% Similarity=0.445 Sum_probs=108.5
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~----------- 74 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRAD----------- 74 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTT-----------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhC-----------
Confidence 589999999999999999999999999999999999999999999999999999999999999999962
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
+.+|||++|+.........++.+|+++||.||++.++|...|+..+
T Consensus 75 ----------------~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~ 120 (238)
T 2gwr_A 75 ----------------SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARL 120 (238)
T ss_dssp ----------------CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHC
T ss_pred ----------------CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 2589999999999999999999999999999999999999998764
No 116
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.65 E-value=1.3e-15 Score=148.42 Aligned_cols=115 Identities=22% Similarity=0.347 Sum_probs=102.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhc-CCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQL-GHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~-g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+||||||++..+..+..+|+.. |+. +..+.++.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~-------- 80 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQF-------- 80 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTS--------
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcc--------
Confidence 468999999999999999999986 788 5589999999999999999999999999999999999999962
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+.. +...+++.+|+++||.||++.++|...|++++
T Consensus 81 ------------------~~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (143)
T 2qv0_A 81 ------------------AHKPFIVFITAWK--EHAVEAFELEAFDYILKPYQESRIINMLQKLT 125 (143)
T ss_dssp ------------------TTCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ------------------CCCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHH
Confidence 2457899999874 36778999999999999999999999998753
No 117
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.65 E-value=8.9e-16 Score=143.29 Aligned_cols=115 Identities=19% Similarity=0.216 Sum_probs=105.9
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..+..+|+..|+.|..+.++.+|+..+....||+||+|+.||+++|+++++.||...
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~---------- 71 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ---------- 71 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC----------
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc----------
Confidence 4799999999999999999999999999999999999999999999999999999999999999999732
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|+..... .++.+|+++|+.||++..+|...|++.+
T Consensus 72 --------------~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 72 --------------ADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp --------------CCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred --------------ccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 23679999999987766 8999999999999999999999998765
No 118
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.65 E-value=4.8e-16 Score=151.24 Aligned_cols=118 Identities=37% Similarity=0.629 Sum_probs=102.9
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..++.+|+..|+.+..+.+|.+|++.+....||+||+|+.||+++|+++++.||+....
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~-------- 82 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERT-------- 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHH--------
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhh--------
Confidence 589999999999999999999999999999999999999999999999999999999999999999963210
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
...+.+|||++|+........ .+|+++||.||++.++|...|++.+
T Consensus 83 -------------~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~ 128 (140)
T 3c97_A 83 -------------HNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCH 128 (140)
T ss_dssp -------------HTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHH
T ss_pred -------------cCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHh
Confidence 013568999999876654433 7899999999999999999998753
No 119
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.64 E-value=4e-16 Score=176.97 Aligned_cols=118 Identities=21% Similarity=0.292 Sum_probs=107.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHH-hcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMK-QLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~-~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
..+||||||++..+..++.+|. ..|+.|..|.||.+|++.+....||+||+|+.||+|||+++++.||...
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~G~~~~~~l~~~~-------- 89 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIKPTVILQDLVMPGVDGLTLLAAYRGNP-------- 89 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHTTST--------
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHhcCc--------
Confidence 4579999999999999999996 4689999999999999999999999999999999999999999999632
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+.+|||++|++.+.+...+|+++|+++||.||++..+|...+..+
T Consensus 90 ----------------~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~ 136 (358)
T 3bre_A 90 ----------------ATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYH 136 (358)
T ss_dssp ----------------TTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHH
T ss_pred ----------------ccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHH
Confidence 23679999999999999999999999999999999999999888754
No 120
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.64 E-value=5.8e-16 Score=164.09 Aligned_cols=115 Identities=23% Similarity=0.386 Sum_probs=108.1
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..+..+|+..|+.|..+.++.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~----------- 73 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRAR----------- 73 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHH-----------
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcC-----------
Confidence 589999999999999999999999999999999999999998899999999999999999999999962
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
+.+|||++|+.........++++|+++||.||++.++|...|++.+
T Consensus 74 ----------------~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~ 119 (230)
T 2oqr_A 74 ----------------SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVL 119 (230)
T ss_dssp ----------------CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHH
T ss_pred ----------------CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 3589999999998888999999999999999999999999998753
No 121
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.64 E-value=1.3e-15 Score=152.99 Aligned_cols=117 Identities=26% Similarity=0.366 Sum_probs=102.6
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhcCC--eEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCch
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQLGH--SIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~g~--~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~ 935 (1002)
...+||||||++..+..++.+|+..|. .+..+.++.+|++.+....||+||+|+.||+++|+++++.||+.
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~------- 96 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNLNGIEALKLIMKK------- 96 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHH-------
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHhc-------
Confidence 356899999999999999999998863 35579999999999999999999999999999999999999963
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHH--HHHHHHHcCCCEEEeCCCC---------hHHHHHHHHhhc
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSE--SAEECFANGMDSFVSKPVT---------FQKLKECLEQYF 1001 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~--~~~~~~~aG~d~~l~KP~~---------~~~L~~~l~~~l 1001 (1002)
.+ +|||++|+..... ...+++.+|+++||.||++ ..+|...|++++
T Consensus 97 -------------------~~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~ 153 (164)
T 3t8y_A 97 -------------------AP-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAM 153 (164)
T ss_dssp -------------------SC-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHT
T ss_pred -------------------CC-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHh
Confidence 13 7999999977654 6678999999999999999 688888887764
No 122
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.64 E-value=1.6e-15 Score=145.43 Aligned_cols=115 Identities=23% Similarity=0.355 Sum_probs=105.1
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcC-CCcEEEEcCCCCC-CCHHHHHHHHhccccCCCchh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ-NYDLILMDVCMPV-MDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~-~~DlIlmDi~MP~-mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+||||||++..+..++.+|...||.|..+.++.+|++.+... .||+||+|+.||+ ++|+++++.||..
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~-------- 76 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREI-------- 76 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHH--------
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhc--------
Confidence 46899999999999999999999999999999999999999987 8999999999997 9999999999973
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+....++.+| +||.||++.++|...|++++
T Consensus 77 ------------------~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~ 121 (132)
T 2rdm_A 77 ------------------DPNMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLL 121 (132)
T ss_dssp ------------------CTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHH
T ss_pred ------------------CCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHH
Confidence 2568999999999888888877776 89999999999999998764
No 123
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.64 E-value=5.7e-16 Score=153.16 Aligned_cols=117 Identities=18% Similarity=0.292 Sum_probs=97.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhc-CC-eEEEEcCHHHHHHHHHc-CCCcEEEEcCCCCCCCHHHHHHHHhccccCCCch
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQL-GH-SIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~-g~-~v~~a~~G~eAl~~~~~-~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~ 935 (1002)
..+||||||++..+..++.+|+.. |+ .|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||..
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~------- 75 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRF------- 75 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHH-------
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHh-------
Confidence 358999999999999999999988 88 68899999999999998 899999999999999999999999973
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+....+....++.+|+++||.||++.++|..+|++.+
T Consensus 76 -------------------~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~ 122 (154)
T 2qsj_A 76 -------------------DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLIL 122 (154)
T ss_dssp -------------------CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHH
T ss_pred -------------------CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHH
Confidence 25689999999999999999999999999999999999999998754
No 124
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.64 E-value=6e-16 Score=150.04 Aligned_cols=115 Identities=15% Similarity=0.204 Sum_probs=102.5
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHc-CCCcEEEEcCCCCCCCHHHHHHHHhccccCCCch
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~-~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~ 935 (1002)
....+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.||..
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~------- 85 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQ------- 85 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTS-------
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhh-------
Confidence 456799999999999999999999999999999999999999998 899999999999999999999999962
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEc-CCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMT-ANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalT-a~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++| +...... .+++ +++|+.||++.++|...|++.+
T Consensus 86 -------------------~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~ 129 (138)
T 2b4a_A 86 -------------------TKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHK 129 (138)
T ss_dssp -------------------SSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTC
T ss_pred -------------------CCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHH
Confidence 3579999999 8877666 6666 9999999999999999998765
No 125
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.62 E-value=1.4e-15 Score=160.06 Aligned_cols=113 Identities=23% Similarity=0.384 Sum_probs=105.4
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..+..+|+..| .|..+.++.+|++.+ ..||+||+|+.||+++|+++++.||..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~----------- 68 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--EAFHVVVLDVMLPDYSGYEICRMIKET----------- 68 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--SCCSEEEEESBCSSSBHHHHHHHHHHH-----------
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhc-----------
Confidence 479999999999999999999999 999999999999987 789999999999999999999999963
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+..+.+...+++.+|+++||.||++.++|...|++++
T Consensus 69 ---------------~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 115 (220)
T 1p2f_A 69 ---------------RPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFL 115 (220)
T ss_dssp ---------------CTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ---------------CCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 25689999999999999999999999999999999999999998753
No 126
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.62 E-value=1.8e-16 Score=168.12 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=106.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcC-Ce-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLG-HS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g-~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+||||||++..+..++.+|+..| +. +..+.+|.+|++.+....||+||+|+.||++||+++++.||..
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~lr~~--------- 72 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSR--------- 72 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHCCSEEEECSEETTEEHHHHHHHHHHH---------
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHh---------
Confidence 479999999999999999999887 88 4579999999999999899999999999999999999999963
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+..+.+...+++++|+++||.||++.++|...|++.
T Consensus 73 -----------------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~ 118 (225)
T 3c3w_A 73 -----------------MPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDV 118 (225)
T ss_dssp -----------------CTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 3569999999999999999999999999999999999999998765
No 127
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.62 E-value=5.3e-16 Score=179.22 Aligned_cols=116 Identities=25% Similarity=0.308 Sum_probs=104.1
Q ss_pred CeEEEEecCHHHHHHHHHHHHh-cCCeEEEEcCHHHHHHHHHc-CCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQ-LGHSIDVVNNGVEAVHAVQC-QNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~-~g~~v~~a~~G~eAl~~~~~-~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+||||||++.++..++.+|+. .|+.|..|.||.+|++.+.. ..||+||+|+.||+|||+++++.||..
T Consensus 4 ~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~~DlvllDi~mP~~dG~ell~~l~~~--------- 74 (400)
T 3sy8_A 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHASLS--------- 74 (400)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSCEEEEEECSSCSSSCHHHHHHHHHHH---------
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCCCCEEEEeCCCCCCCHHHHHHHHHhc---------
Confidence 5899999999999999999998 57899999999999999988 589999999999999999999999963
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCH-----HHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALS-----ESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~-----~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+.... ....+|+.+|+++||.||++.++|...|++.+
T Consensus 75 -----------------~~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~ 126 (400)
T 3sy8_A 75 -----------------GKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYN 126 (400)
T ss_dssp -----------------TCEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred -----------------CCCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHH
Confidence 245778888887766 66778999999999999999999999998753
No 128
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.62 E-value=2.3e-16 Score=167.04 Aligned_cols=118 Identities=8% Similarity=0.059 Sum_probs=103.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHh-cCCeEEE-EcCHHHHHHH-HHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCch
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQ-LGHSIDV-VNNGVEAVHA-VQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWD 935 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~-~g~~v~~-a~~G~eAl~~-~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~ 935 (1002)
..+||||||++..+..++.+|+. .|+.+.. +.++.+|+.. +....||+||+|+.||+|||+++++.||+.
T Consensus 7 ~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~------- 79 (225)
T 3klo_A 7 KLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHI------- 79 (225)
T ss_dssp SEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHH-------
T ss_pred ceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHh-------
Confidence 46899999999999999999994 6888754 4677777764 678899999999999999999999999961
Q ss_pred hhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 936 AAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
..+.+|||++|++.+......++.+|+++||.||+++++|...|++.+
T Consensus 80 ------------------~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~ 127 (225)
T 3klo_A 80 ------------------SCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKIL 127 (225)
T ss_dssp ------------------HCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHH
T ss_pred ------------------hCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHH
Confidence 025689999999999999999999999999999999999999998753
No 129
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.60 E-value=1.2e-15 Score=157.61 Aligned_cols=111 Identities=10% Similarity=0.089 Sum_probs=100.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||||||++..+..+..+|...||.|..+.++.+|+ ...||+||+|+.||+|||+ +++.++..
T Consensus 12 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~~~~dlvl~D~~mp~~~g~-l~~~~~~~---------- 76 (196)
T 1qo0_D 12 ELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----DVPVDVVFTSIFQNRHHDE-IAALLAAG---------- 76 (196)
T ss_dssp GCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----SSCCSEEEEECCSSTHHHH-HHHHHHHS----------
T ss_pred CCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----CCCCCEEEEeCCCCccchH-HHHHHhcc----------
Confidence 46899999999999999999999999999999988877 4689999999999999999 99999862
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|++.+.+...+|+++|+++||.||++..+|...|+..
T Consensus 77 ----------------~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~ 122 (196)
T 1qo0_D 77 ----------------TPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSA 122 (196)
T ss_dssp ----------------CTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHH
T ss_pred ----------------CCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHH
Confidence 1568999999999999999999999999999999999999888754
No 130
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.60 E-value=4.2e-17 Score=154.33 Aligned_cols=115 Identities=24% Similarity=0.384 Sum_probs=107.0
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.+||||||++..+..+..+|...|+.+..+.++.+|++.+....||+||+|+.||+++|+++++.||..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~----------- 72 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQR----------- 72 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHH-----------
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhh-----------
Confidence 479999999999999999999999999999999999999998999999999999999999999999963
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.+.+|||++|+....+...+++++|+++|+.||++.++|...|++.
T Consensus 73 ---------------~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 118 (124)
T 1dc7_A 73 ---------------HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERA 118 (124)
T ss_dssp ---------------CTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHH
T ss_pred ---------------CCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHH
Confidence 2568999999999888888999999999999999999999998765
No 131
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.59 E-value=8.1e-15 Score=154.56 Aligned_cols=111 Identities=22% Similarity=0.347 Sum_probs=104.4
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEA 940 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~ 940 (1002)
+||||||++..+..++.+|+..||.|..+.++.+|++.+....||+|| ||+++|+++++.||+.
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi----lp~~~g~~~~~~lr~~------------ 65 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM----VSDKNALSFVSRIKEK------------ 65 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEE----ECCTTHHHHHHHHHHH------------
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEE----eCCCCHHHHHHHHHhC------------
Confidence 699999999999999999999999999999999999999999999999 9999999999999963
Q ss_pred hhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCC-ChHHHHHHHHhhc
Q 039716 941 GIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPV-TFQKLKECLEQYF 1001 (1002)
Q Consensus 941 ~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~-~~~~L~~~l~~~l 1001 (1002)
.+.+|||++|+..+.+....++.+|+++||.||+ +.++|...|++.+
T Consensus 66 --------------~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~ 113 (223)
T 2hqr_A 66 --------------HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARL 113 (223)
T ss_dssp --------------CTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHT
T ss_pred --------------CCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHh
Confidence 1268999999999999999999999999999999 9999999998764
No 132
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.57 E-value=3e-15 Score=162.51 Aligned_cols=102 Identities=24% Similarity=0.366 Sum_probs=89.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhc-CCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQL-GHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~-g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
.+||||||++..+..+...|... |+.+. +.+|.+|+..+....||+||+|+.||+|||+++++.||+
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~-~~~~~~~~~~~~~~~~dlvllD~~mP~~~G~~~~~~lr~----------- 72 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEID-AFDTLEGARHCQGDEYVVALVDLTLPDAPSGEAVKVLLE----------- 72 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEE-EESSTGGGTTCCTTTEEEEEEESCBTTBTTSHHHHHHHH-----------
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEE-EeChHHHHHHhhcCCCcEEEEeCCCCCCCHHHHHHHHHh-----------
Confidence 58999999999999999999764 77765 667777887777789999999999999999999999995
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCCh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTF 990 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~ 990 (1002)
..+|||++|++.+.+...+|+++|+++||.||+..
T Consensus 73 -----------------~~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 73 -----------------RGLPVVILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp -----------------TTCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred -----------------CCCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 13899999999999999999999999999999754
No 133
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.53 E-value=3.6e-14 Score=160.38 Aligned_cols=114 Identities=19% Similarity=0.281 Sum_probs=101.1
Q ss_pred CeEEEEecCHHHHHHHHHHHHhc-CCe-EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQL-GHS-IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~-g~~-v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~ 937 (1002)
.+||||||++..+..++.+|+.. |+. |..+.|+.+|++.+....||+||+|+.||+|||+++++.||+.
T Consensus 4 ~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~pDlVllDi~mp~~dGlell~~l~~~--------- 74 (349)
T 1a2o_A 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFNPDVLTLDVEMPRMDGLDFLEKLMRL--------- 74 (349)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEECCCSSSCHHHHHHHHHHS---------
T ss_pred CEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHhc---------
Confidence 58999999999999999999986 888 6799999999999999999999999999999999999999962
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCH--HHHHHHHHcCCCEEEeCCCCh---------HHHHHHHHhh
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALS--ESAEECFANGMDSFVSKPVTF---------QKLKECLEQY 1000 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~--~~~~~~~~aG~d~~l~KP~~~---------~~L~~~l~~~ 1000 (1002)
.+ +|||++|+.... +...+++++|+++||.||++. ++|...|+..
T Consensus 75 -----------------~p-~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~ 130 (349)
T 1a2o_A 75 -----------------RP-MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTA 130 (349)
T ss_dssp -----------------SC-CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred -----------------CC-CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHH
Confidence 23 899999998875 447889999999999999983 7777776643
No 134
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.45 E-value=6.1e-14 Score=173.91 Aligned_cols=113 Identities=10% Similarity=0.064 Sum_probs=102.9
Q ss_pred eEEEEecCH-HH-------HHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCC-CcEEEEcCCCCC----CCHHHHHHHHhc
Q 039716 861 KILLVEDNK-IN-------VMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQN-YDLILMDVCMPV----MDGLKATRLIRS 927 (1002)
Q Consensus 861 ~ILiVeDn~-~n-------~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~-~DlIlmDi~MP~----mdG~e~~~~IR~ 927 (1002)
+||||||++ .. +..++..|++.||+|..|.||.+|+..+.... ||+||+|++||+ |||+++++.||+
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~~~d~vilDi~lp~~~~~~~G~~ll~~iR~ 81 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE 81 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTCCCSEEEEECCCCSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCCCCcEEEEeCCCCcccccccHHHHHHHHHH
Confidence 799999999 78 89999999999999999999999999999874 999999999999 999999999997
Q ss_pred cccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCC-HHHHHHHHHcCCCEEEeCCCChHH-HHHHHHh
Q 039716 928 FEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANAL-SESAEECFANGMDSFVSKPVTFQK-LKECLEQ 999 (1002)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~-~~~~~~~~~aG~d~~l~KP~~~~~-L~~~l~~ 999 (1002)
. ...+|||++|+... .+++...+..|+|||+.||++..+ |...|+.
T Consensus 82 ~--------------------------~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a 129 (755)
T 2vyc_A 82 R--------------------------QQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVA 129 (755)
T ss_dssp H--------------------------STTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHH
T ss_pred h--------------------------CCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHH
Confidence 3 24699999999888 888899999999999999999999 6555543
No 135
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.42 E-value=1.8e-13 Score=163.39 Aligned_cols=114 Identities=17% Similarity=0.287 Sum_probs=86.6
Q ss_pred EEccHHHHHHHHHHHHhhhhhcCCC-C---eeEEEEEecCCCCcccchhhhhhhhhhcchhhhhhhccCCCCCccCCCCC
Q 039716 478 VIGDVLRIRQILTNLISNAIKFTPE-G---KVGIKLYVVPEPPFAKEGLKQKSKAYQSATDAVKEEKHQPKSQTASDQNG 553 (1002)
Q Consensus 478 v~gD~~rL~QIL~NLlsNAIKfT~~-G---~I~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (1002)
+.+|+.+|.|||.|||.||++|+.. | .|.|.+...
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~----------------------------------------- 69 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERT----------------------------------------- 69 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----------------------------------------
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----------------------------------------
Confidence 6689999999999999999999984 5 455543210
Q ss_pred CCCCCCCCCccCCCCCCCCCCCccCCCCCccccccceEEEEEEEecCCCCCcCcHhhhhhhccCCCcc--ccCcCCCccc
Q 039716 554 FHDKKHGEGYQDHKHDDDPGTPVSHGNSMDEDLEATVWIRCDVYDTGIGIPENALPTLFRKYMQVSAD--HARKYGGTGL 631 (1002)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~--~~~~~~GtGL 631 (1002)
...++.|+|.|+|+|||++.++++|.+|+.++.- .....+|+||
T Consensus 70 ----------------------------------~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~Gl 115 (621)
T 2q2e_B 70 ----------------------------------GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQGI 115 (621)
T ss_dssp ----------------------------------TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSSH
T ss_pred ----------------------------------CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCcee
Confidence 0024789999999999999999999887654321 1123479999
Q ss_pred cHHHHHHHHHHhCCE-EEEEeecCC---ceEEEEEEeCC
Q 039716 632 GLAICKQLVELMGGR-LTVTSKVHC---GSTFTFILPYQ 666 (1002)
Q Consensus 632 GLaI~k~Lve~~gG~-I~v~S~~g~---GTtF~~~LP~~ 666 (1002)
||++|+.+++.|||. |+++|..+. |++|+|.||..
T Consensus 116 GLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~ 154 (621)
T 2q2e_B 116 GISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTS 154 (621)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSS
T ss_pred chhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchh
Confidence 999999999999999 899998874 55555555543
No 136
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.10 E-value=2.8e-10 Score=122.23 Aligned_cols=176 Identities=11% Similarity=0.082 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEecc---cccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhC
Q 039716 214 SQILKRADNFLHFVLQNAPVVMGHQDK---ELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKG 287 (1002)
Q Consensus 214 ~~~l~~~~~~l~~il~~~p~~i~~~d~---~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g 287 (1002)
.+.++.++.+++.+++++|.+|+..|. ++++.++|..| .|+++++++|++..+++++............++..+
T Consensus 55 ~~~l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~ 134 (258)
T 3p7n_A 55 RVEVQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREH 134 (258)
T ss_dssp ------CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcC
Confidence 344666778899999999999999999 99999999865 588999999999888887766555555666777788
Q ss_pred CCcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 288 LPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRK--REKMAKLREEIAVQKAKETELNKTIHITE 365 (1002)
Q Consensus 288 ~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~--~~~~~~l~~el~~~~~~~~el~k~~~~~e 365 (1002)
.+...++.+....+...++.+.+.|+++.+|.+.|+++++.|||+++.. +..+.+..+.+......+.+....
T Consensus 135 ~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~i~~~----- 209 (258)
T 3p7n_A 135 KPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLEVTTL----- 209 (258)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHHTTSCHHHHHHHHH-----
T ss_pred CCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHHHHHH-----
Confidence 7776676665555555667788999999999999999999999998433 222222222111100111110000
Q ss_pred HHHHHHHHHHHhhhccccHHHHHHHHHHHHh
Q 039716 366 ETMRAKQMLATMSHEIRSPLTGVVSMAEILS 396 (1002)
Q Consensus 366 ~~~~~k~fla~iSHELRTPL~~I~g~~elL~ 396 (1002)
...+.....++|+|..|++.|......+.
T Consensus 210 --~~~g~~~~eia~~l~~s~~tv~~~l~~i~ 238 (258)
T 3p7n_A 210 --VASGLRNKEVAARLGLSEKTVKMHRGLVM 238 (258)
T ss_dssp --HHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred --HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 00112346789999999999988877553
No 137
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.05 E-value=1.4e-09 Score=127.50 Aligned_cols=115 Identities=20% Similarity=0.317 Sum_probs=99.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
..+||+|||+..+...+...|.. .+.+..+.++.+++ ......||+|+||+.||+|||+++++.||....
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~-~~~~~~~dlil~D~~mp~~dG~~~~~~ir~~~~-------- 221 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAK-ISAGGPVDLVIVNAAAKNFDGLRFTAALRSEER-------- 221 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHH-HHHHSSCSEEEEETTCSSSCHHHHHHHHHTSGG--------
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHh-hhccCCCCEEEEecCCCCCcHHHHHHHHHhCcc--------
Confidence 45899999999998888888865 46777888998886 445678999999999999999999999997432
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHh
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQ 999 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~ 999 (1002)
...+|||++|+....+....|+++|+++|+.||++..++...+..
T Consensus 222 ----------------~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~ 266 (459)
T 1w25_A 222 ----------------TRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKT 266 (459)
T ss_dssp ----------------GTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHH
T ss_pred ----------------ccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHH
Confidence 246899999999999999999999999999999999988776654
No 138
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.99 E-value=6.3e-09 Score=101.80 Aligned_cols=122 Identities=19% Similarity=0.313 Sum_probs=95.5
Q ss_pred HHHHHHHHHhccCcEEEEec-ccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCccee-E
Q 039716 220 ADNFLHFVLQNAPVVMGHQD-KELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKRE-I 294 (1002)
Q Consensus 220 ~~~~l~~il~~~p~~i~~~d-~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e-~ 294 (1002)
+.++++.+++++|.+|+..| .++++.++|..+ .|+. +++|++..+++++............++..|.+...+ .
T Consensus 15 ~~~~~~~~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (158)
T 3k3c_A 15 AAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEW 92 (158)
T ss_dssp CHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccccce
Confidence 34578899999999999999 999999998865 5666 899999999998766556667778888888775432 3
Q ss_pred EEEEee----cCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHH
Q 039716 295 TFETEL----FGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKL 343 (1002)
Q Consensus 295 ~~~~~~----~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l 343 (1002)
.+.... +...++.+...|+++.+|.+.|+++++.|||+++++++++..+
T Consensus 93 ~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~ 145 (158)
T 3k3c_A 93 RLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEAR 145 (158)
T ss_dssp EEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eEEeccCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHH
Confidence 232221 2236777888999999999999999999999998877665543
No 139
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.93 E-value=2.2e-09 Score=106.48 Aligned_cols=122 Identities=15% Similarity=0.079 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEecccccEEEeecc---CCCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcc
Q 039716 215 QILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAK 291 (1002)
Q Consensus 215 ~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~ 291 (1002)
.+++.++..++.+++++|.+|+..|.++++.++|.. +.|++.++++|++..+++++ .........+.++..|.+..
T Consensus 15 ~~~~~~~~~l~~il~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~ 93 (152)
T 3mxq_A 15 NAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSF 93 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCcee
Confidence 456777888999999999999999999999999875 57888899999999999988 65666667788999887632
Q ss_pred eeE-------EEE--Ee---ecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHH
Q 039716 292 REI-------TFE--TE---LFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKR 337 (1002)
Q Consensus 292 ~e~-------~~~--~~---~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~ 337 (1002)
... .+. .+ .+...++.+++.|+.+.+|++.|++.+..|||++++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a~ 151 (152)
T 3mxq_A 94 SSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
T ss_dssp EECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC----
T ss_pred eecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhcc
Confidence 111 010 11 11233567888999999999999999999999987654
No 140
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.90 E-value=4.4e-10 Score=118.82 Aligned_cols=91 Identities=26% Similarity=0.349 Sum_probs=75.5
Q ss_pred CeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEE
Q 039716 884 HSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAM 963 (1002)
Q Consensus 884 ~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIal 963 (1002)
+.|..+.|+.+|++.+....||+||+|+.||+|+|+++++.||+.. +..||+++
T Consensus 6 ~~v~~~~~~~~a~~~~~~~~~dlvl~D~~~p~~~g~~~~~~l~~~~--------------------------~~~~i~vi 59 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKID--------------------------PNAKIIVC 59 (237)
T ss_dssp EEEECCCSSSTTHHHHHHHCCSCEEEECCSTTSSHHHHHHHHHHHS--------------------------SSCCEEEE
T ss_pred EEEEECCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHhC--------------------------CCCCEEEE
Confidence 4556689999999999999999999999999999999999999742 23445555
Q ss_pred cCCCCHHHHHHHHHcCCCEEEeCC--CChHHHHHHHHhh
Q 039716 964 TANALSESAEECFANGMDSFVSKP--VTFQKLKECLEQY 1000 (1002)
Q Consensus 964 Ta~~~~~~~~~~~~aG~d~~l~KP--~~~~~L~~~l~~~ 1000 (1002)
++....+...+++++|+++|+.|| ++..+|...+.+.
T Consensus 60 ~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~ 98 (237)
T 3cwo_X 60 SAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQT 98 (237)
T ss_dssp CCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHH
Confidence 665668899999999999999999 7777887776654
No 141
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=98.88 E-value=1.3e-08 Score=98.47 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCC--CchhccCccchhhhhHHHHHHHHhCCC
Q 039716 215 QILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGK--TDVEIFSGAGVKESQDFKREVLEKGLP 289 (1002)
Q Consensus 215 ~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk--~~~e~~~~~~~~~~~~~~~~vl~~g~~ 289 (1002)
++|++++++++.++++++.+++..|.++...++|..+ .|+.++++.|. ...+++++.............+..+.+
T Consensus 2 ~aL~~se~rl~~~~~~~~~g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~ 81 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDT 81 (142)
T ss_dssp -------CCHHHHHHHTTCEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhCCcEEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCc
Confidence 4577788899999999999999999999988887754 57777777663 345666676666666666677777777
Q ss_pred cceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHH
Q 039716 290 AKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLRE 345 (1002)
Q Consensus 290 ~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~ 345 (1002)
...++.+....+...|+.....|+++.+|.+.+++++..|||+++++++++.+.++
T Consensus 82 ~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~ 137 (142)
T 3mr0_A 82 YDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSRE 137 (142)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHH
Confidence 66666665555555677788889999999999999999999999888777655443
No 142
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=98.81 E-value=9.2e-09 Score=96.08 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=86.9
Q ss_pred HHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEE
Q 039716 221 DNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFE 297 (1002)
Q Consensus 221 ~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~ 297 (1002)
+..++.+++++|.+|+..|.++++.++|..| .|++.++++|++..++.++.............+..+.+...++.+.
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 83 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLVNR 83 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHhCCCeEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 3567789999999999999999999999865 6889999999998887665433332333344556666666666555
Q ss_pred EeecCceEEEEEEeeeecCCCCEEEEEEEeechhHH
Q 039716 298 TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQ 333 (1002)
Q Consensus 298 ~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~ 333 (1002)
.+.+...++.+.+.|+++.+|.+.+++++..|||++
T Consensus 84 ~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~ 119 (120)
T 2gj3_A 84 RKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSEL 119 (120)
T ss_dssp CTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSC
T ss_pred cCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCccc
Confidence 555455566788899999999999999999999974
No 143
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=98.80 E-value=9.2e-09 Score=100.89 Aligned_cols=124 Identities=17% Similarity=0.106 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHhccCcEEEEecc---cccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHh
Q 039716 213 LSQILKRADNFLHFVLQNAPVVMGHQDK---ELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEK 286 (1002)
Q Consensus 213 ~~~~l~~~~~~l~~il~~~p~~i~~~d~---~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~ 286 (1002)
+.+.++.++.+++.+++++|.+++..|. ++++.++|..| .|++.++++|++..+++++.............+..
T Consensus 26 ~~~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 105 (166)
T 3ue6_A 26 ANRILEDPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITK 105 (166)
T ss_dssp -----CCCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhc
Confidence 3444555667888999999999999999 79999999865 57888999999988887765555555555667777
Q ss_pred CCCcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHH
Q 039716 287 GLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRK 336 (1002)
Q Consensus 287 g~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~ 336 (1002)
+.+...++.+....+...++.+...|+++.+|.+.|+++++.|||+++.+
T Consensus 106 ~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~ 155 (166)
T 3ue6_A 106 GVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAK 155 (166)
T ss_dssp TCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHH
T ss_pred CCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHH
Confidence 77766666655544455566788899999999999999999999987654
No 144
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=98.80 E-value=1e-08 Score=102.26 Aligned_cols=119 Identities=13% Similarity=0.050 Sum_probs=96.3
Q ss_pred HHHHHHHHhccCcEEEEeccc---ccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeE
Q 039716 221 DNFLHFVLQNAPVVMGHQDKE---LRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREI 294 (1002)
Q Consensus 221 ~~~l~~il~~~p~~i~~~d~~---~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~ 294 (1002)
...++.+++++|.+|+..|.+ +++.++|..| .|++.++++|++..+++++............++..+.+...++
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 85 (176)
T 4hia_A 6 FEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVL 85 (176)
T ss_dssp HHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEE
Confidence 356788999999999999999 9999999865 5888999999998888877655555556667777887776666
Q ss_pred EEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHH
Q 039716 295 TFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREK 339 (1002)
Q Consensus 295 ~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~ 339 (1002)
.+....+...++.+...|+++.+|.+.|+++++.|||++++.+++
T Consensus 86 ~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 86 RNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp EEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHH
T ss_pred EEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHH
Confidence 665555555666788999999999999999999999998776554
No 145
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=98.77 E-value=5.1e-08 Score=92.63 Aligned_cols=119 Identities=17% Similarity=0.093 Sum_probs=84.8
Q ss_pred HHHhccCcEEEEecccc---cEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEe
Q 039716 226 FVLQNAPVVMGHQDKEL---RYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETE 299 (1002)
Q Consensus 226 ~il~~~p~~i~~~d~~~---~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~ 299 (1002)
.+++++|.+|+..|.++ ++.++|..| .|++.++++|++...+.++.............+..+.+...++.+..+
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 47899999999999976 999998765 688999999998877665443333233344556666665556555554
Q ss_pred ecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHH
Q 039716 300 LFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREE 346 (1002)
Q Consensus 300 ~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~e 346 (1002)
.+...++.+.+.|+.+.+ +.+++++..|||++++.++++..++++
T Consensus 83 dG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~ 127 (132)
T 2pr5_A 83 DGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTE 127 (132)
T ss_dssp TSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHH
Confidence 444556677888998765 788999999999998887776555443
No 146
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=98.76 E-value=2.7e-08 Score=97.27 Aligned_cols=126 Identities=15% Similarity=0.111 Sum_probs=98.4
Q ss_pred HHHHHHHHhccCcEEEEecccc---cEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeE
Q 039716 221 DNFLHFVLQNAPVVMGHQDKEL---RYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREI 294 (1002)
Q Consensus 221 ~~~l~~il~~~p~~i~~~d~~~---~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~ 294 (1002)
+.+++.+++++|.+++..|.++ ++.++|..+ .|+..++++|++..+++++............++..+.+...++
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREVL 103 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcceE
Confidence 4678889999999999999999 999998764 5778899999999888876555545555566677777666665
Q ss_pred EEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHHH
Q 039716 295 TFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLREE 346 (1002)
Q Consensus 295 ~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~e 346 (1002)
.+....+...++.+...|+.+.+|.+.|+++++.|||++++.++++.++.++
T Consensus 104 ~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~ 155 (162)
T 3sw1_A 104 RNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRAR 155 (162)
T ss_dssp EEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC-
T ss_pred EEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHH
Confidence 5544444556677888999999999999999999999998887766555433
No 147
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=98.74 E-value=2.4e-08 Score=101.41 Aligned_cols=119 Identities=19% Similarity=0.315 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhccCcEEEEec-ccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCccee-
Q 039716 219 RADNFLHFVLQNAPVVMGHQD-KELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKRE- 293 (1002)
Q Consensus 219 ~~~~~l~~il~~~p~~i~~~d-~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e- 293 (1002)
+++.+++.+++++|.+++..| .++++.++|..+ .|+. +++|++..+++++............++..|.+...+
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSE 111 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccccc
Confidence 345678999999999999999 999999998765 5666 899999999998766655667778888888775432
Q ss_pred EEEEEe--e--cCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHH
Q 039716 294 ITFETE--L--FGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREK 339 (1002)
Q Consensus 294 ~~~~~~--~--~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~ 339 (1002)
..+... . +...++.+...|+++.+|.+.|+++++.|||++++++++
T Consensus 112 ~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 112 WRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp EEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-
T ss_pred eeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHH
Confidence 222211 1 344677888999999999999999999999999887665
No 148
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=98.71 E-value=2.9e-08 Score=91.50 Aligned_cols=118 Identities=10% Similarity=-0.102 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccC--CCchhccCccchhhhhHHHHHHHHhCCCcc
Q 039716 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILG--KTDVEIFSGAGVKESQDFKREVLEKGLPAK 291 (1002)
Q Consensus 217 l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiG--k~~~e~~~~~~~~~~~~~~~~vl~~g~~~~ 291 (1002)
|++++.+++.+++++|.+++..|.++++.++|..+ .|+.+++++| ....+++++............++..+.+..
T Consensus 2 l~~~~~~l~~~~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 81 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFD 81 (125)
T ss_dssp ---------------CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEE
T ss_pred cHHHHHHHHHHHHhCCeeEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCce
Confidence 45667888999999999999999999999998764 5778888888 455566666666666666677777777765
Q ss_pred eeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHH
Q 039716 292 REITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQV 334 (1002)
Q Consensus 292 ~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~ 334 (1002)
.++.+....+...++.+...|+++.+|.+.+++++..|||+++
T Consensus 82 ~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k 124 (125)
T 3nja_A 82 VEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHK 124 (125)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEeccccc
Confidence 6666655555556777888899999999999999999999875
No 149
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.68 E-value=3.1e-08 Score=92.34 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=85.7
Q ss_pred HHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHH-hCCCcceeEEEEE
Q 039716 223 FLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLE-KGLPAKREITFET 298 (1002)
Q Consensus 223 ~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~-~g~~~~~e~~~~~ 298 (1002)
|...+++++|.+|+..|.++++.++|..+ .|+++++++|++..+++++............++. .+.+...++.+..
T Consensus 3 ~~~ll~e~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 82 (121)
T 3f1p_B 3 FKGLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRS 82 (121)
T ss_dssp -----CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEEC
T ss_pred cccceecCCCceEEEECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEEe
Confidence 45678999999999999999999999865 5889999999999999988776665555555553 4445555666666
Q ss_pred eecCceEEEEEEeeeecC-CCCEEEEEEEeechhHHH
Q 039716 299 ELFGSKTFLIYVEPVFSK-SGETIGVNYMGMDVTDQV 334 (1002)
Q Consensus 299 ~~~~~~~~~~~~~p~~~~-~G~~~gi~~~~~DITe~~ 334 (1002)
..+...++.....|+++. +|.+.+++++..|||+++
T Consensus 83 ~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~k 119 (121)
T 3f1p_B 83 KNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSS 119 (121)
T ss_dssp TTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC-
T ss_pred cCCCEEEEEEEEEEEECCCCCceeEEEEEeEEccccc
Confidence 656666777888899987 889999999999999864
No 150
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=98.67 E-value=7.8e-08 Score=87.13 Aligned_cols=110 Identities=25% Similarity=0.303 Sum_probs=81.3
Q ss_pred HHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEE
Q 039716 221 DNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFE 297 (1002)
Q Consensus 221 ~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~ 297 (1002)
+++++.+++++|.+++..|.++++.++|..+ .|+.+++++|++..++++. ...........++..+.....+..+.
T Consensus 2 e~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T 3luq_A 2 DERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIFPE-IGEEWKSVHRRGLAGEVIRVEEDCFV 80 (114)
T ss_dssp CHHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHCTT-CCHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred hHHHHHHHhcCCceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHCCc-cHHHHHHHHHHHhcCCcceeeeeEEE
Confidence 3567889999999999999999999998764 6788899999999998853 33444444555554332222222444
Q ss_pred EeecCceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 298 TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 298 ~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
...+...++.+...|+++.+|.+.|+++++.|||
T Consensus 81 ~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 81 RADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp C--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred cCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 4444556677888999999999999999999997
No 151
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=98.64 E-value=5.4e-08 Score=90.87 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=86.9
Q ss_pred HHhccCcEEEEecc---cccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEee
Q 039716 227 VLQNAPVVMGHQDK---ELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETEL 300 (1002)
Q Consensus 227 il~~~p~~i~~~d~---~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~ 300 (1002)
+++++|.+++..|. ++++.++|..+ .|+..++++|++..+++++.............+..+.+...++.+....
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 81 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKS 81 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCC
Confidence 56889999999999 89999998865 5788899999998888876555545555566677777666666555544
Q ss_pred cCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHH
Q 039716 301 FGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKM 340 (1002)
Q Consensus 301 ~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~ 340 (1002)
+...++.+...|+++.+|.+.|+++++.|||++++++++.
T Consensus 82 g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 82 GEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp CCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhh
Confidence 5556677889999999999999999999999987765544
No 152
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=98.59 E-value=1.4e-07 Score=85.61 Aligned_cols=115 Identities=9% Similarity=-0.081 Sum_probs=90.2
Q ss_pred HHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEE
Q 039716 220 ADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITF 296 (1002)
Q Consensus 220 ~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~ 296 (1002)
+..+++.+++++|.+++..|.++++.++|..+ .|+..++++|++...++++............++..+.+...++.+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIRM 84 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEEE
Confidence 45678889999999999999999999998764 577888999999886666554444444556667777776666665
Q ss_pred EEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHH
Q 039716 297 ETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQV 334 (1002)
Q Consensus 297 ~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~ 334 (1002)
....+...++.+...|+.+.+|.+.|+++++.|||+++
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~ 122 (124)
T 3lyx_A 85 LHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRK 122 (124)
T ss_dssp ECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC-
T ss_pred EccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhh
Confidence 55555556777889999999999999999999999864
No 153
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.56 E-value=3.8e-07 Score=96.82 Aligned_cols=114 Identities=19% Similarity=0.312 Sum_probs=85.0
Q ss_pred HHHHHHHhccCcEEEEecccccEEEeeccC---------------CCCCcccccCCCchhccCccchhhhhHHHHHHHHh
Q 039716 222 NFLHFVLQNAPVVMGHQDKELRYRFIYNHF---------------PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEK 286 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---------------~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~ 286 (1002)
.+++.+++++|.+|...|.++++.|+|..+ +|++.++++|++..++++.. ...+.++..
T Consensus 22 ~~l~~iLd~~~~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~~------~~~~~~~~~ 95 (233)
T 3vol_A 22 ARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP------AHQRHLLAN 95 (233)
T ss_dssp HHHHHHHTTSSSEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSSH------HHHHHHHHT
T ss_pred HHHHHHHhcCCCcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCCH------HHHHHHHHh
Confidence 456788999999999999999999998754 36788999999988877532 122334443
Q ss_pred CCCcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHHHHHHH
Q 039716 287 GLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKMAKLRE 345 (1002)
Q Consensus 287 g~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~~~l~~ 345 (1002)
... ..+ .+... +..++.++..|+++.+|++.|++.++.|||++++.++++..+.+
T Consensus 96 ~~~-~~~--~~~~~-~g~~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~ 150 (233)
T 3vol_A 96 LTG-VHK--AELNL-GGRRFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQ 150 (233)
T ss_dssp CCS-CEE--EEEEE-TTEEEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred ccc-cee--EEEEE-CCEEEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHH
Confidence 322 122 22222 45678899999999999999999999999999888776655543
No 154
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=98.52 E-value=2.2e-07 Score=84.83 Aligned_cols=119 Identities=15% Similarity=0.095 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhccCcEEEEec---ccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcce
Q 039716 219 RADNFLHFVLQNAPVVMGHQD---KELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKR 292 (1002)
Q Consensus 219 ~~~~~l~~il~~~p~~i~~~d---~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~ 292 (1002)
+++..++.+++++|.+++..| .++++.++|..+ .|+..++++|++..+++++.............+..+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCG 82 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCccee
Confidence 345667889999999999999 899999998764 57788899999998887765444444444556666666555
Q ss_pred eEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHH
Q 039716 293 EITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKR 337 (1002)
Q Consensus 293 e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~ 337 (1002)
++.+....+...++.+...|+.+.+|.+.|+++++.|||++++.+
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e 127 (130)
T 2z6d_A 83 RLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGV 127 (130)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC---
T ss_pred EEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhh
Confidence 555444444455677888999999999999999999999876543
No 155
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=98.47 E-value=3.1e-07 Score=83.75 Aligned_cols=117 Identities=14% Similarity=0.080 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEeccc-ccEEEeeccC---CCCCcccccCCC--chhccCccchhhhhHHHHHHHHhC
Q 039716 214 SQILKRADNFLHFVLQNAPVVMGHQDKE-LRYRFIYNHF---PSLHEEDILGKT--DVEIFSGAGVKESQDFKREVLEKG 287 (1002)
Q Consensus 214 ~~~l~~~~~~l~~il~~~p~~i~~~d~~-~~~~~~~~~~---~~~~~e~iiGk~--~~e~~~~~~~~~~~~~~~~vl~~g 287 (1002)
++.|++++.+++.+++++|.+++..|.+ +++.++|..+ .|+.+++++|+. ..+.+++............ +..+
T Consensus 3 e~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 81 (125)
T 3eeh_A 3 KQQAAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDG 81 (125)
T ss_dssp -------CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcC
Confidence 3456677888999999999999999999 9999998764 577888888876 4555555444444443433 3455
Q ss_pred CCcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 288 LPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 288 ~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
.+...++.+....+...++.+...|+.+.+|.+.++++++.|||
T Consensus 82 ~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 82 ESADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp CCEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CCccEEEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 55545555444444567778889999999999999999999997
No 156
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=98.47 E-value=2.8e-07 Score=83.34 Aligned_cols=107 Identities=15% Similarity=0.080 Sum_probs=82.6
Q ss_pred HHhccCcEEEEecc---cccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEee
Q 039716 227 VLQNAPVVMGHQDK---ELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETEL 300 (1002)
Q Consensus 227 il~~~p~~i~~~d~---~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~ 300 (1002)
.++++|.+++..|. ++++.++|..+ .|++.++++|++..+++++.............+..+.+...++.+....
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKS 81 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCC
Confidence 46889999999999 99999999865 5788899999998877766554444455566677777666666655444
Q ss_pred cCceEEEEEEeeeecCCCCEEEEEEEeechhHH
Q 039716 301 FGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQ 333 (1002)
Q Consensus 301 ~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~ 333 (1002)
+...++.+...|+++.+|.+.|+++++.|||++
T Consensus 82 g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer 114 (115)
T 4eet_B 82 GKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDH 114 (115)
T ss_dssp CCEEEEEEEEEEEECTTSCEEEEEEEEEECSCC
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEeeccc
Confidence 555566788999999999999999999999975
No 157
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=98.46 E-value=7.3e-07 Score=84.22 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeecc---CCCCCcccccCCCchhccCccchhhhhHHHHHHHHh
Q 039716 210 VEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEK 286 (1002)
Q Consensus 210 ~~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~ 286 (1002)
+..+++.|++++..++.+++++|.+|+..|.++++.++|.. +.|++.++++|++..+++++................
T Consensus 4 ~~~~e~~l~~~~~~~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~ 83 (130)
T 1d06_A 4 MLETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMAT 83 (130)
T ss_dssp HHHHHHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhc
Confidence 45667788888889999999999999999999999999876 468899999999988887765433333333444444
Q ss_pred CCC----cceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 287 GLP----AKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 287 g~~----~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
+.. ...++....+.+...++.+.+.|+.+. ...+++++++|||
T Consensus 84 ~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~--~~~~~~~~~~DIT 130 (130)
T 1d06_A 84 GEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSG--GERFFTGFIRDLT 130 (130)
T ss_dssp CCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC
T ss_pred CCccccCCeeEEEEEeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEECc
Confidence 432 223444444444445566777888763 3345788889997
No 158
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=98.46 E-value=4e-07 Score=85.33 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=87.0
Q ss_pred HHHHHhccCcEEEEecc---cccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEE
Q 039716 224 LHFVLQNAPVVMGHQDK---ELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFE 297 (1002)
Q Consensus 224 l~~il~~~p~~i~~~d~---~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~ 297 (1002)
++.+++++|.+++..|. ++++.++|..+ .|+..++++|++..+++++.............+..+.+...++.+.
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINY 83 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEE
Confidence 34578999999999999 99999998764 5778889999998888776554444455556677777665565554
Q ss_pred EeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHH
Q 039716 298 TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVR 335 (1002)
Q Consensus 298 ~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~ 335 (1002)
...+...++.+...|+++.+|.+.|+++++.|||++++
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 121 (146)
T 2v0u_A 84 TKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR 121 (146)
T ss_dssp CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCC
T ss_pred ecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHH
Confidence 44444567778889999999999999999999998765
No 159
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.46 E-value=1.6e-07 Score=86.81 Aligned_cols=105 Identities=8% Similarity=0.178 Sum_probs=87.0
Q ss_pred ccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCceEE
Q 039716 230 NAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTF 306 (1002)
Q Consensus 230 ~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~~ 306 (1002)
+++..|+..|.++++.++|..+ .|+++++++|++..+++++...+........++..+.+...++.+....+...++
T Consensus 7 ~~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~ 86 (117)
T 3f1p_A 7 DSKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWL 86 (117)
T ss_dssp GGGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEEEE
T ss_pred CCccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEEEE
Confidence 4577889999999999999865 6889999999999999988877777666777777777666677776666666777
Q ss_pred EEEEeeeecC-CCCEEEEEEEeechhHHH
Q 039716 307 LIYVEPVFSK-SGETIGVNYMGMDVTDQV 334 (1002)
Q Consensus 307 ~~~~~p~~~~-~G~~~gi~~~~~DITe~~ 334 (1002)
.....|+++. +|.+.+++++..|||+++
T Consensus 87 ~~~~~~~~d~~~g~~~~iv~~~~DITer~ 115 (117)
T 3f1p_A 87 ETQGTVIYNPRNLQPQCIMCVNYVLSEIE 115 (117)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEECSCCB
T ss_pred EEeeEEEECCCCCCceEEEEEeeeccccc
Confidence 7888999997 899999999999999864
No 160
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=98.45 E-value=7.4e-07 Score=81.37 Aligned_cols=112 Identities=13% Similarity=0.023 Sum_probs=86.7
Q ss_pred HHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCc--hhccCccchhhhhHHHHHHHHhCCCcceeE
Q 039716 220 ADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTD--VEIFSGAGVKESQDFKREVLEKGLPAKREI 294 (1002)
Q Consensus 220 ~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~--~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~ 294 (1002)
+++.++.+++++|.+++..|.++++.++|..+ .|+++++++|+.. .+++++............++..+.+...++
T Consensus 2 s~~~~~~l~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e~ 81 (118)
T 3icy_A 2 NAEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLVY 81 (118)
T ss_dssp HHHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEEE
T ss_pred cHHHHHHHHhcCCceEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 35678899999999999999999999998765 4667778777653 566666666666666666777776655666
Q ss_pred EEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 295 TFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 295 ~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
.+....+...++.....|+++.+|.+.+++++..|||
T Consensus 82 r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 82 RIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 6655555556777888999999999999999999997
No 161
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=98.38 E-value=6.2e-07 Score=87.32 Aligned_cols=130 Identities=14% Similarity=0.092 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHH
Q 039716 209 PVEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLE 285 (1002)
Q Consensus 209 ~~~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~ 285 (1002)
.+.+..+.+++++..++.+++++|.+++..|.++++.++|..+ .|+..++++|++..+++++............+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 106 (167)
T 1v9y_A 27 VIMKLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNRE 106 (167)
T ss_dssp -------------CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhHHHHHHHHhCCCCEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhh
Confidence 3444555667777888999999999999999999999998764 5788899999999888876554444444444544
Q ss_pred hCCC----cceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHH
Q 039716 286 KGLP----AKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKM 340 (1002)
Q Consensus 286 ~g~~----~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~ 340 (1002)
.+.. ...++.+....+...++.+...|+ +..|.+ ++++++.|||++++.++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~-~~~~~~~DiT~~~~~e~~l 163 (167)
T 1v9y_A 107 GGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKEQT 163 (167)
T ss_dssp ----------CEEEEECTTSCEEEEEEEEEEE-EETTEE-EEEEEEEC-----------
T ss_pred cCCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCE-EEEEEEecCcHHHHHHHHH
Confidence 4332 223444433334445666777788 556665 4888999999987665443
No 162
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.36 E-value=4.9e-07 Score=101.09 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=44.5
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCccc------cCcCCCccccHHHHHHHHHHhCCEEEEEeecCC
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSADH------ARKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~------~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~ 655 (1002)
.|+|.|+|+||+++++..+|.+|++.+... ....|+.|+||+.+..+ +++.|.|....
T Consensus 55 ~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~v-----s~l~v~s~~~~ 118 (333)
T 1b63_A 55 LIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASISSV-----SRLTLTSRTAE 118 (333)
T ss_dssp EEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTT-----SEEEEEEECTT
T ss_pred EEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCccccchhhhhcC-----CcEEEEEecCC
Confidence 478999999999999999999998764321 12456799999987554 36888887643
No 163
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.35 E-value=2.4e-06 Score=84.34 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=82.4
Q ss_pred HHHHHHHhccCcEEEEecccccEEEeecc---CCCC--CcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEE
Q 039716 222 NFLHFVLQNAPVVMGHQDKELRYRFIYNH---FPSL--HEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITF 296 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~~~~~~~~~~---~~~~--~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~ 296 (1002)
..+..+++++|.+|...|.++++.|+|.. +..+ ..++++|++..+++++.... .......++++|.+...++.+
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g~~~~~iGr~v~~~~~~~~~~-~v~~i~~~l~~g~~~~~~~~~ 97 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPKVLD-KVKKVFELLRNGQRDKVNMWF 97 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSCCCGGGTTSBGGGSSCHHHHH-HHHHHHHHHHTTSBSEEEEEE
T ss_pred HHHHHHHHhCCCceEEEcCCCeEEEEeCCCchhhhhcCCCHHHcCCCHHHhCCHHHHH-HHHHHHHHHHcCCccEEEEEE
Confidence 45778999999999999999999999988 4333 35789999999987743222 112234456667765554443
Q ss_pred EEeecC-ceEEEEEEeeeecCCCCEEEEEEEeechhHHHHH
Q 039716 297 ETELFG-SKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRK 336 (1002)
Q Consensus 297 ~~~~~~-~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~ 336 (1002)
...+ .+.+.+...|+++.+|+++|++.++.|||+.++.
T Consensus 98 --~~~~~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~l 136 (151)
T 2qkp_A 98 --QSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFEL 136 (151)
T ss_dssp --EETTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGG
T ss_pred --ecCCCCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhh
Confidence 2222 5667888899999999999999999999976543
No 164
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.34 E-value=3.6e-07 Score=104.06 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=39.4
Q ss_pred EEEEEecCCCCCcCcHhh--------hhhhccCCCcc----ccCcCCCccccHHHHHHHHHHh
Q 039716 593 RCDVYDTGIGIPENALPT--------LFRKYMQVSAD----HARKYGGTGLGLAICKQLVELM 643 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~--------IF~pF~q~~~~----~~~~~~GtGLGLaI~k~Lve~~ 643 (1002)
.|+|.|+|+|||++.+++ +|.+|+....- .....|+.|+||++|+.+++.+
T Consensus 65 ~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~ 127 (390)
T 1kij_A 65 SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGASVVNALSEWT 127 (390)
T ss_dssp CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred EEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCccccccCCCCCcceeeecccccce
Confidence 378999999999999988 99988765321 1113457999999999999754
No 165
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=98.31 E-value=7e-07 Score=82.85 Aligned_cols=111 Identities=6% Similarity=-0.024 Sum_probs=77.0
Q ss_pred HHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccch-hhhhHHHHHHHHhCCCcceeEEEEE
Q 039716 223 FLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGV-KESQDFKREVLEKGLPAKREITFET 298 (1002)
Q Consensus 223 ~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~-~~~~~~~~~vl~~g~~~~~e~~~~~ 298 (1002)
.++.+++++|.+|+ .|.++++.++|..+ .|+++++++|++..+++++... ..........+..+.+...++.+..
T Consensus 4 ~~~~~~~~~~~~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 82 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKR 82 (120)
T ss_dssp CHHHHHHHCSSEEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEEEC
T ss_pred hHHHHHhcCCceEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEEEe
Confidence 36789999999996 47899999999865 6888999999998888765322 2233333444555656556666555
Q ss_pred eecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHH
Q 039716 299 ELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVR 335 (1002)
Q Consensus 299 ~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~ 335 (1002)
..+...+..+...|+ +..|...|+++++.|||++++
T Consensus 83 ~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~ 118 (120)
T 3mqq_A 83 AGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRR 118 (120)
T ss_dssp TTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC---
T ss_pred CCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhc
Confidence 544445556777777 556666788889999999765
No 166
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.28 E-value=2e-06 Score=95.59 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=90.6
Q ss_pred HHHhccCcEEEEecc---cccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEe
Q 039716 226 FVLQNAPVVMGHQDK---ELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETE 299 (1002)
Q Consensus 226 ~il~~~p~~i~~~d~---~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~ 299 (1002)
.+++++|.+|+..|. ++++.++|..+ .|+++++++|++..+++++.............+..+.+...++.+...
T Consensus 15 ~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 94 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTK 94 (332)
T ss_dssp CCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECT
T ss_pred hHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcC
Confidence 467899999999999 99999999865 688999999999988877655444445556677777776666666555
Q ss_pred ecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHH
Q 039716 300 LFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREK 339 (1002)
Q Consensus 300 ~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~ 339 (1002)
.+...++.+...|+++..|.+.|++++..|||++++.+++
T Consensus 95 dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~ 134 (332)
T 2wkq_A 95 SGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAE 134 (332)
T ss_dssp TCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHH
T ss_pred CCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhh
Confidence 5555677788999999999999999999999997655443
No 167
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=98.27 E-value=3.1e-06 Score=88.69 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=80.6
Q ss_pred EEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCceEEEEEEe
Q 039716 235 MGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLIYVE 311 (1002)
Q Consensus 235 i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~~~~~~~ 311 (1002)
|+..|.++++.++|..| .|++.++++|++...+.++...........+.+..+.+...++.+..+.+...++.....
T Consensus 2 i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~ 81 (227)
T 3ewk_A 2 VSITDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDSTIV 81 (227)
T ss_dssp EEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEEEEE
T ss_pred EEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeeeEEE
Confidence 56789999999999865 688999999999877766544333333334455667666667766655555566678889
Q ss_pred eeecCCCCEEEEEEEeechhHHHHHHHHH
Q 039716 312 PVFSKSGETIGVNYMGMDVTDQVRKREKM 340 (1002)
Q Consensus 312 p~~~~~G~~~gi~~~~~DITe~~~~~~~~ 340 (1002)
|+++.+|.+.+++++..|||+++++++++
T Consensus 82 p~~d~~g~~~~~~~~~~DIT~~k~~e~~l 110 (227)
T 3ewk_A 82 PLMDNAGKPRQYISIRRDITAQKEAEAQL 110 (227)
T ss_dssp EEECSSSCEEEEEEEEEECTTTTHHHHHH
T ss_pred EEEcCCCCEEEEEEEEEehhhHHHHHHHH
Confidence 99999999999999999999987766554
No 168
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.27 E-value=1.6e-06 Score=97.91 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=35.8
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCcccc-----CcCCCc-cccHHHHHHHHHHhCCEEEEEeecC
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSADHA-----RKYGGT-GLGLAICKQLVELMGGRLTVTSKVH 654 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~-----~~~~Gt-GLGLaI~k~Lve~~gG~I~v~S~~g 654 (1002)
.|+|.|+|+||+++.++++|++|++.+.... ....|. |+||+.+..+ . .+.|.|...
T Consensus 65 ~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~gl~si~~v----s-~v~v~t~~~ 127 (365)
T 1h7s_A 65 LIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCAL----S-DVTISTCHA 127 (365)
T ss_dssp EEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSSHHHHHHHH----S-EEEEEEECT
T ss_pred EEEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCCCCchhhhhhhh----c-cEEEEEccC
Confidence 5789999999999999999999998654321 112244 9999877654 2 677777653
No 169
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=98.26 E-value=2.8e-06 Score=77.98 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=75.8
Q ss_pred cCcEEEEec---ccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCce
Q 039716 231 APVVMGHQD---KELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSK 304 (1002)
Q Consensus 231 ~p~~i~~~d---~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~ 304 (1002)
++.+|+..| .++++.++|..| .|++.++++|++...+.++.............+..+.+...++....+.+...
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 456777788 479999999865 58899999999876655443332233344556677777666666655555556
Q ss_pred EEEEEEeeeecCCCCEEEEEEEeechhH
Q 039716 305 TFLIYVEPVFSKSGETIGVNYMGMDVTD 332 (1002)
Q Consensus 305 ~~~~~~~p~~~~~G~~~gi~~~~~DITe 332 (1002)
+..+.+.|+++.+|.+.+++++..|||+
T Consensus 82 ~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 82 WNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 7778899999999999999999999985
No 170
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.26 E-value=6.1e-06 Score=77.19 Aligned_cols=102 Identities=17% Similarity=0.268 Sum_probs=75.0
Q ss_pred HHHHHHHhccCcEEEEecccccEEEeeccCC---------------CCCcccccCCCchhccCccchhhhhHHHHHHHHh
Q 039716 222 NFLHFVLQNAPVVMGHQDKELRYRFIYNHFP---------------SLHEEDILGKTDVEIFSGAGVKESQDFKREVLEK 286 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~~~~~~~~~~~~---------------~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~ 286 (1002)
.+++.+++++|.+|...|.++++.++|.++. |+..++++|++..++++.. ...+.++..
T Consensus 5 ~rl~~il~~~~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~------~~~~~~~~~ 78 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP------AHQRHLLAN 78 (121)
T ss_dssp HHHHHHHTTSSSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSH------HHHHHHHHH
T ss_pred HHHHHHHhcCCccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCH------HHHHHHHhC
Confidence 3578899999999999999999999997643 3677899999988887542 122344554
Q ss_pred CCCcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHH
Q 039716 287 GLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQ 333 (1002)
Q Consensus 287 g~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~ 333 (1002)
... ..+..+ .. +..++.+++.|+++.+|++.|+++++.|||++
T Consensus 79 ~~~-~~~~~~--~~-~~~~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 79 LTG-VHKAEL--NL-GGRRFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp CSS-CEEEEE--EE-TTEEEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred cCC-CcEEEE--EE-CCEEEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 431 112222 22 45677889999999999999999999999973
No 171
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.21 E-value=2e-06 Score=95.89 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=42.0
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCcccc------CcCCCccccHHHHHHHHHHhCCEEEEEeecCC
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSADHA------RKYGGTGLGLAICKQLVELMGGRLTVTSKVHC 655 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~------~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~ 655 (1002)
.|+|.|+|+||+++.++.+|+||++.+.... ..+|--|.||+-+..+. .+.|.|....
T Consensus 59 ~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-----~l~v~sr~~~ 122 (348)
T 3na3_A 59 LIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-----HVTITTKTAD 122 (348)
T ss_dssp EEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTCHHHHHHHSS-----EEEEEEECTT
T ss_pred EEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCChHHHHhhccc-----EEEEEEEECC
Confidence 5789999999999999999999998764321 12344578887555442 6899887643
No 172
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.21 E-value=1.4e-06 Score=80.46 Aligned_cols=105 Identities=10% Similarity=0.136 Sum_probs=71.1
Q ss_pred HHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEE
Q 039716 220 ADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITF 296 (1002)
Q Consensus 220 ~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~ 296 (1002)
++.+++.+++++|.+|+..|.++++.++|..+ .|+.+++++|++..+++++............+...+.+.
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT------ 90 (125)
T ss_dssp ---------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE------
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE------
Confidence 67788999999999999999999999999864 578889999999999885433333333335566666432
Q ss_pred EEeecC-ceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 297 ETELFG-SKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 297 ~~~~~~-~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
....+. ..++.+...|+.+. |...|+++++.|||
T Consensus 91 ~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp EEEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred EeEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 122233 67788889998765 66678899999997
No 173
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.21 E-value=2.2e-06 Score=98.40 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=35.5
Q ss_pred EEEEEEEecCCCCCcCcHhhhhhhccCCCccccCcCCCccccHHHHHHHHHHhCCEEEEEeecCCceEEEEEEeCCC
Q 039716 591 WIRCDVYDTGIGIPENALPTLFRKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFILPYQV 667 (1002)
Q Consensus 591 ~l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~LP~~~ 667 (1002)
.++|+|.|+|+|+++. . ...+.|+||.|++.+++.+ .+.+. +.|+++++.+|+..
T Consensus 333 ~l~i~V~D~G~g~~~~------------~-----~~~~~G~GL~lv~~l~~~~----~~~~~-~~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 333 NVRASVIDRGQWKDHR------------D-----GARGRGRGLAMAEALVSEA----RIMHG-AGGTTATLTHRLSR 387 (399)
T ss_dssp EEEEEEEESCBC-----------------------------CHHHHHTTSSEE----EEEEE-TTEEEEEEEEECEE
T ss_pred EEEEEEEECCCCCCCC------------C-----CCCCCCcHHHHHHHHHHhe----eeEEC-CCcEEEEEEEEcCC
Confidence 4889999999999976 0 1136799999999998754 45554 56999999999753
No 174
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=98.18 E-value=5.5e-06 Score=76.65 Aligned_cols=109 Identities=10% Similarity=0.018 Sum_probs=67.5
Q ss_pred ccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCC----cceeEEEEEeecC
Q 039716 230 NAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLP----AKREITFETELFG 302 (1002)
Q Consensus 230 ~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~----~~~e~~~~~~~~~ 302 (1002)
++|.+|+..|.++++.++|..+ .|++.++++|++...++++................+.. ...++....+.+.
T Consensus 1 ~~~d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~ 80 (119)
T 2vv6_A 1 TIPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGT 80 (119)
T ss_dssp -CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSC
T ss_pred CCcceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCCCC
Confidence 3688999999999999998764 68899999999988887654433323333444444433 2334444444444
Q ss_pred ceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHH
Q 039716 303 SKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKM 340 (1002)
Q Consensus 303 ~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~ 340 (1002)
..++.+.+.|+.+. ...++++++.|||++++.++++
T Consensus 81 ~~~~~~~~~~~~~~--~~~~~~~~~~DITerk~~e~~l 116 (119)
T 2vv6_A 81 TFPMHLSIGEMQSG--GEPYFTGFVRDLTEHQQTQARL 116 (119)
T ss_dssp EEEEEEEEEEEEET--TEEEEEEEEEECC---------
T ss_pred EEEEEEEEEEEEEC--CeEEEEEEEEEcHHHHHHHHHH
Confidence 45566777888763 3346788899999988776654
No 175
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=98.17 E-value=6.8e-06 Score=76.25 Aligned_cols=109 Identities=16% Similarity=0.025 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCccee
Q 039716 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKRE 293 (1002)
Q Consensus 217 l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e 293 (1002)
|+.++..++.+++++|.+|+..|.++++.++|..+ .|++.++++|++..++.++.......... ..+..+.+...+
T Consensus 6 l~~se~~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e 84 (117)
T 2r78_A 6 LYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASL-ARIVGGEPLREE 84 (117)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHH-HHHHTTCCEEEE
T ss_pred HHHhHHHHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHH-HHHHcCCcEEEE
Confidence 56778889999999999999999999999999865 58899999999876554322211111222 334445454455
Q ss_pred EEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 294 ITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
..+..+.+...++.+...|+. +|. ++++++|||
T Consensus 85 ~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 85 RTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp EEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred EEEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 555444444455556677775 566 456678987
No 176
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=98.16 E-value=2.2e-06 Score=79.09 Aligned_cols=113 Identities=11% Similarity=0.009 Sum_probs=74.7
Q ss_pred HHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeec
Q 039716 225 HFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELF 301 (1002)
Q Consensus 225 ~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~ 301 (1002)
+.+++++|.+++..|.++++.++|..+ .|++.++++|++..+++++............++..+.. ..++.+....+
T Consensus 2 ~~l~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g 80 (126)
T 3mjq_A 2 KNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKKEG 80 (126)
T ss_dssp CTTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECTTS
T ss_pred hhHHhhCCceEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEccCC
Confidence 457899999999999999999998764 57888999999999988776655555555566655544 44554444433
Q ss_pred CceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHH
Q 039716 302 GSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKM 340 (1002)
Q Consensus 302 ~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~ 340 (1002)
...++.+...|+.. +...|+++++.|||++++++++.
T Consensus 81 ~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~ 117 (126)
T 3mjq_A 81 TSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPP 117 (126)
T ss_dssp CEEEEEEEEEEEES--SSSEEEEEEEEECC---------
T ss_pred CEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhccc
Confidence 44455555565554 34668889999999987765543
No 177
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=98.11 E-value=4.7e-06 Score=76.52 Aligned_cols=107 Identities=9% Similarity=-0.032 Sum_probs=79.7
Q ss_pred cCcEEEEec-ccccEEEeeccC---CCCCcccccCCC-chhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCceE
Q 039716 231 APVVMGHQD-KELRYRFIYNHF---PSLHEEDILGKT-DVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKT 305 (1002)
Q Consensus 231 ~p~~i~~~d-~~~~~~~~~~~~---~~~~~e~iiGk~-~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~ 305 (1002)
++.+++..| .++++.|+|..+ .|+.+++++|.. ..++++++..+.........+..+.+...++.+..+.+...+
T Consensus 2 a~~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w 81 (115)
T 3h9w_A 2 TKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHYVW 81 (115)
T ss_dssp -CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEE
T ss_pred cceEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCEEE
Confidence 567888888 678888888754 578888888832 235666666666666666777777766667666665566677
Q ss_pred EEEEEeeeecCCCCEEEEEEEeechhHHHHHH
Q 039716 306 FLIYVEPVFSKSGETIGVNYMGMDVTDQVRKR 337 (1002)
Q Consensus 306 ~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~ 337 (1002)
+.....|+++.+|.+++++++..|||++++++
T Consensus 82 ~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~ 113 (115)
T 3h9w_A 82 IRDVVHVVRDDSGEVEALIGFMFDISLEHHHH 113 (115)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEECGGGGC--
T ss_pred EEEEEEEEECCCCCEEEEEEEEeccCcccccc
Confidence 78888999999999999999999999987654
No 178
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=98.05 E-value=2.3e-05 Score=81.92 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=84.2
Q ss_pred HHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEee
Q 039716 224 LHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETEL 300 (1002)
Q Consensus 224 l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~ 300 (1002)
++.+++++|.+|+..|.++++.++|..| .|++.++++|++...+.++...........+.+..+.+...++....+.
T Consensus 113 ~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~ 192 (227)
T 3ewk_A 113 LKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRT 192 (227)
T ss_dssp HHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEEC
T ss_pred HHHHHhcCcCeEEEEcCCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCC
Confidence 3456789999999999999999999865 5889999999998888776555555555666777888877777666554
Q ss_pred cC------ceEEEEEEeeeecCCCCEEEEEEEeec
Q 039716 301 FG------SKTFLIYVEPVFSKSGETIGVNYMGMD 329 (1002)
Q Consensus 301 ~~------~~~~~~~~~p~~~~~G~~~gi~~~~~D 329 (1002)
+. ..+..+.+.|+++.+|.++|++++..|
T Consensus 193 G~~~~dg~~~~~~~~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 193 GPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp CSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred CCcCcccceEEEEEEEEEEECCCCCEEEEEEEecC
Confidence 43 355668889999999999999999876
No 179
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.03 E-value=1.1e-05 Score=73.43 Aligned_cols=107 Identities=7% Similarity=0.020 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeE
Q 039716 218 KRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREI 294 (1002)
Q Consensus 218 ~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~ 294 (1002)
+++..+++.+++++|.+|+..|.++++.++|..+ .|+++++++|++..++++...... ...+ ..+.....+.
T Consensus 9 e~~~~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~~-~~~~~~~~e~ 83 (118)
T 3olo_A 9 ELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEEI-RQKNNYTFKT 83 (118)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHHH-HHHSEEEEEE
T ss_pred HHHHHHHHHHHhcCCceEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHHH-HhcCcEEEEE
Confidence 3444567789999999999999999999998864 588999999999998886543332 2222 2333334444
Q ss_pred EEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 295 TFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 295 ~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
.+....+...++.+...|+.+.. . .++++++.|||
T Consensus 84 ~~~~~~g~~~~~~~~~~~~~~~~-~-~~~~~~~~DIT 118 (118)
T 3olo_A 84 RYRSQSGRIFLVEMSLTFLEDQE-R-RFSCVFVREKS 118 (118)
T ss_dssp EEECTTCCEEEEEEEEEEEEETT-E-EEEEEEEEEC-
T ss_pred EEEccCCCEEEEEEEEEEEEECC-c-cEEEEEEEeCC
Confidence 44444344445556667776543 2 35667889987
No 180
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=97.97 E-value=2.3e-06 Score=79.69 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcce
Q 039716 216 ILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKR 292 (1002)
Q Consensus 216 ~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~ 292 (1002)
.+....++.+.+++++|.+|+..|.++++.++|..+ .|++.++++|++..+++++...........+++..|.+...
T Consensus 6 ~~~~~~~~~~~il~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (118)
T 3fg8_A 6 HHHHHSSGRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQT 85 (118)
T ss_dssp -------CCCCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEE
T ss_pred ccccccchHHHHHhhCCceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEE
Confidence 345566778889999999999999999999999764 57888999999999999876555555667778888876544
Q ss_pred eEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHH
Q 039716 293 EITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQ 333 (1002)
Q Consensus 293 e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~ 333 (1002)
++..... ...++.+...|+.+ |+++++.|||++
T Consensus 86 ~~~~~~~--~g~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 86 RVDSLYS--PGMTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp EEECSSS--TTCEEEEEEEEETT------EEEEEEEECSCC
T ss_pred EEEEEcC--CCeEEEEEEEEcCC------cEEEEEEeccCC
Confidence 2211111 34667777788753 477788999963
No 181
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=97.95 E-value=7.1e-05 Score=69.34 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccc--cCCCchhccCccchhhhhHHHHHHH
Q 039716 210 VEELSQILKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDI--LGKTDVEIFSGAGVKESQDFKREVL 284 (1002)
Q Consensus 210 ~~~~~~~l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~i--iGk~~~e~~~~~~~~~~~~~~~~vl 284 (1002)
.+++++.|++++..++.+++++|.+|+..|.++++.++|..+ .|++++++ +|++..++++ . .. ... ..+
T Consensus 5 r~~~e~~L~~~~~~~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~-~-~~---~~~-~~~ 78 (126)
T 3bwl_A 5 RKRREKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF-D-AE---DVQ-TQL 78 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC-C-HH---HHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC-C-HH---HHH-HHH
Confidence 455667788889999999999999999999999999999865 58889999 5677777665 1 11 111 111
Q ss_pred Hh---CCCcceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 285 EK---GLPAKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 285 ~~---g~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
.. +.....+..+..+.+...++.+...|+. ..|.. ++++++.|||
T Consensus 79 ~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~-~~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 79 SGFSVDERRKFEGLYERRDGSTMSVEVHLLRFN-LEGED-RFLAISRDIT 126 (126)
T ss_dssp HTCCTTCEEEEEEEEECTTSCEEEEEEEEEEEE-ETTEE-EEEEEEEEC-
T ss_pred HHHhcCCCcceEEEEEeCCCCEEEEEEEeEEEe-cCCcE-EEEEEEEeCC
Confidence 11 1111222233333333334444445553 34443 5677889997
No 182
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=97.95 E-value=2.8e-05 Score=71.58 Aligned_cols=108 Identities=10% Similarity=0.026 Sum_probs=79.1
Q ss_pred HHHhccCcEEEEecccccEEEeecc---CCCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCC-cceeEEEEEeec
Q 039716 226 FVLQNAPVVMGHQDKELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLP-AKREITFETELF 301 (1002)
Q Consensus 226 ~il~~~p~~i~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~-~~~e~~~~~~~~ 301 (1002)
.+++++|.+|+..|.++++.++|.. +.|+++++++|++..+++++............++..+.. ...++.+..+.+
T Consensus 7 ~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG 86 (121)
T 2kdk_A 7 EINVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDG 86 (121)
T ss_dssp CCCCCSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECSSS
T ss_pred ccccCCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEcCC
Confidence 3678899999999999999999876 468899999999998888776655555545555554332 344555555555
Q ss_pred CceEEEEEEeeeecCC-CCEEEEEEEeechhHH
Q 039716 302 GSKTFLIYVEPVFSKS-GETIGVNYMGMDVTDQ 333 (1002)
Q Consensus 302 ~~~~~~~~~~p~~~~~-G~~~gi~~~~~DITe~ 333 (1002)
...++.....|+++.. |.+.+++++..||++.
T Consensus 87 ~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~ 119 (121)
T 2kdk_A 87 SFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGH 119 (121)
T ss_dssp CEEEEEEEEEEEECCSSSCEEEEEEEEECCSSC
T ss_pred CEEEEEEEEEEEECCCCCeeeEEEEEEEecccc
Confidence 5556667888999875 5666788888888863
No 183
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=97.90 E-value=5.6e-06 Score=100.78 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=88.8
Q ss_pred HHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEe
Q 039716 223 FLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETE 299 (1002)
Q Consensus 223 ~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~ 299 (1002)
.+..++++++..|+..|.++++.++|..| .|++.++++|++......+...+...... +.+..|.....|+.+..+
T Consensus 519 ~~~~lle~a~~~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~-~~l~~g~~~~~E~~~~~~ 597 (635)
T 4eho_A 519 QASSQVHASMQPVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVA-ELIDHGRGWRGEVLLRGA 597 (635)
T ss_dssp SHHHHHHHCSSCCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHH-HHHHHCCCBCCCCEECCS
T ss_pred HHHHHHHhCCCcEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHH-HHHHcCCcEEEEEEEEcc
Confidence 45667899999999999999999998754 67888999999888776666555444443 445567677777777666
Q ss_pred ecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHH
Q 039716 300 LFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVR 335 (1002)
Q Consensus 300 ~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~ 335 (1002)
.+...++.+...|++|.+|.++|+++++.|||++++
T Consensus 598 dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~ 633 (635)
T 4eho_A 598 GNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRT 633 (635)
T ss_dssp SSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCC
T ss_pred CCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhh
Confidence 666677778889999999999999999999998754
No 184
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=97.89 E-value=3.7e-05 Score=70.98 Aligned_cols=107 Identities=12% Similarity=0.019 Sum_probs=74.1
Q ss_pred HHHhccCcEEEEecc---cccEEEeeccC---CCCCcccccCCC--chhccCccchhhhhHHHHHHHHhCCCcceeEEEE
Q 039716 226 FVLQNAPVVMGHQDK---ELRYRFIYNHF---PSLHEEDILGKT--DVEIFSGAGVKESQDFKREVLEKGLPAKREITFE 297 (1002)
Q Consensus 226 ~il~~~p~~i~~~d~---~~~~~~~~~~~---~~~~~e~iiGk~--~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~ 297 (1002)
..++++|.+++..|. ++++.++|..+ .|+..++++|++ ...+.++.............+..+.+...++.+.
T Consensus 23 ~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (138)
T 2l0w_A 23 RKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIAFY 102 (138)
T ss_dssp HHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEEEE
T ss_pred HHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEEEE
Confidence 446779999999999 99999998764 577888999998 3334333322222233344444554444444443
Q ss_pred EeecCceEEEEEEeeeecCCCCEEEEEEEeechhH
Q 039716 298 TELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTD 332 (1002)
Q Consensus 298 ~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe 332 (1002)
...+...++.+...|+.+.+|.+.|+++++.|||+
T Consensus 103 ~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~ 137 (138)
T 2l0w_A 103 RKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVME 137 (138)
T ss_dssp CTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccC
Confidence 33344456678889999999999999999999996
No 185
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=97.88 E-value=0.00011 Score=83.40 Aligned_cols=109 Identities=22% Similarity=0.269 Sum_probs=83.2
Q ss_pred HHHHHHHhccCcEEEEecccccEEEeeccCCC--CCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEe
Q 039716 222 NFLHFVLQNAPVVMGHQDKELRYRFIYNHFPS--LHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETE 299 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~~~~~~~~~~~~~--~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~ 299 (1002)
..+..+++++|.+|...|.++++.++|.. .. +..++++|++..+++++...... .....++.+|.+...+..+.
T Consensus 239 ~~l~~IL~~l~dgIivvD~~g~I~~~N~a-e~i~~~~~e~iGr~v~~~~p~~~~~~~-~~l~~~l~~g~~~~~~~~~~-- 314 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDKDDRVRFFSPG-ERIFTRTPSVLGRPVQLCHPPKSVYVV-NKILKAFKEGRKKEATFWLR-- 314 (369)
T ss_dssp HHHHHHHHHSSSEEEEECTTSBEEEECCS-SCSSCCCGGGTTCBTTTSSCGGGHHHH-HHHHHHHHHTSCSCEEEEEE--
T ss_pred HHHHHHHHhCCCcEEEECCCCcEEEEcCH-HHccCChHHHcCCcHHHHCChhhHHHH-HHHHHHHHcCCceEEEEEEe--
Confidence 46788999999999999999999999986 44 35678999999998875432222 22345667777655544432
Q ss_pred ecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHH
Q 039716 300 LFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVR 335 (1002)
Q Consensus 300 ~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~ 335 (1002)
. +.+++.+...|+++.+|.++|++.++.|||+.++
T Consensus 315 ~-~g~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~ 349 (369)
T 3cax_A 315 L-REKYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKK 349 (369)
T ss_dssp E-TTEEEEEEEEEEECTTSCEEEEEEEEEECHHHHT
T ss_pred e-CCEEEEEEEEEEECCCCCEEEEEEEEEcCHHHHH
Confidence 2 2367888899999999999999999999998654
No 186
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=97.87 E-value=4.2e-05 Score=70.17 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=46.7
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLS 429 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~s 429 (1002)
++|++.+||||||||++|.++++++.+. ..+++..+..++.+|..+|+++|+|.
T Consensus 61 ~~~~~~~shel~tpl~~i~~~~e~l~~~-----~~~~~~~i~~~~~~l~~~i~~ll~~~ 114 (114)
T 3zcc_A 61 TLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHcChHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4799999999999999999999988542 34456899999999999999999873
No 187
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.87 E-value=1.1e-05 Score=90.73 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=38.1
Q ss_pred EEEEEEecCCCCCcCcHhhhhhhccCCCcccc------CcCCCccccHHHHHHHHHHhCCEEEEEeecC
Q 039716 592 IRCDVYDTGIGIPENALPTLFRKYMQVSADHA------RKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654 (1002)
Q Consensus 592 l~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~~------~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g 654 (1002)
..|+|.|+|+||+++.+..+|++|++.+.... ..+|--|-||+-+..+ +.+.|.|...
T Consensus 55 ~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~av-----S~l~V~sr~~ 118 (367)
T 3h4l_A 55 ESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGI-----AKLSVITTTS 118 (367)
T ss_dssp SEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTHHHHHHHHS-----SEEEEEEESS
T ss_pred EEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccchHHHHhhcc-----CEEEEEEEEC
Confidence 35789999999999999999999998754321 1112236777655443 2688888754
No 188
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.64 E-value=0.00019 Score=65.33 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=74.1
Q ss_pred HHHHHhccCcEEEEecccccEEEeecc---CCCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCc-ceeEEEEEe
Q 039716 224 LHFVLQNAPVVMGHQDKELRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPA-KREITFETE 299 (1002)
Q Consensus 224 l~~il~~~p~~i~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~-~~e~~~~~~ 299 (1002)
...+++++|.+++..|.++++.++|.. +.|++.++++|++..++++... ........++..+.+. ..++.+. .
T Consensus 9 ~~~il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~ 85 (115)
T 3b33_A 9 PSAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHAS--LDLALLTQPLQSGQSITDSDVTFV-V 85 (115)
T ss_dssp HHHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEE--CCTHHHHHHHHHCCCEEEEEEEEE-E
T ss_pred HHHHHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccc--hhhHHHHHHHHcCCcccCCceEEe-c
Confidence 345899999999999999999999875 4678888999999988876432 1233445566666553 2344443 3
Q ss_pred ecCceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 300 LFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 300 ~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
.+...++.+...|+.+ +|. .|++.++.||+
T Consensus 86 ~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 86 DGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp TTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred CCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 3334456788899998 787 68889999974
No 189
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.59 E-value=2.2e-05 Score=82.50 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=31.7
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCc----------cccCcCCCccccHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSA----------DHARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~----------~~~~~~~GtGLGLaI~k~Lv 640 (1002)
.|.|.|||+||+++++...|..+.+... ......|..|+|++-|..++
T Consensus 74 ~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~ 131 (220)
T 2wer_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVA 131 (220)
T ss_dssp EEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTE
T ss_pred EEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcC
Confidence 4789999999999999888766543210 01112344799997665443
No 190
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=97.57 E-value=0.0002 Score=62.65 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=67.3
Q ss_pred EEEEecc---cccEEEeeccC---CCCCcccccCCC-chhccC-ccchhhhhHHHHHHHHhCCCcceeEEEEEeecCceE
Q 039716 234 VMGHQDK---ELRYRFIYNHF---PSLHEEDILGKT-DVEIFS-GAGVKESQDFKREVLEKGLPAKREITFETELFGSKT 305 (1002)
Q Consensus 234 ~i~~~d~---~~~~~~~~~~~---~~~~~e~iiGk~-~~e~~~-~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~ 305 (1002)
+++..|. ++++.++|..+ .|++.++++|++ ....+. +.............+..+.+...++.+....+...+
T Consensus 3 ~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (110)
T 1byw_A 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFL 82 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEE
T ss_pred CEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEE
Confidence 4555565 59999998764 578889999998 244443 322222233444556666665555555444444556
Q ss_pred EEEEEeeeecCCCCEEEEEEEeechhH
Q 039716 306 FLIYVEPVFSKSGETIGVNYMGMDVTD 332 (1002)
Q Consensus 306 ~~~~~~p~~~~~G~~~gi~~~~~DITe 332 (1002)
+.+...|+.+..|.+.|++++..|||+
T Consensus 83 ~~~~~~~~~~~~g~~~~~~~~~~DiTe 109 (110)
T 1byw_A 83 CLVDVVPVKNEDGAVIMFILNFEVVME 109 (110)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred EEEEEEEeecCCCCEEEEEEEEEeccC
Confidence 778889999999999999999999996
No 191
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.55 E-value=0.00016 Score=81.83 Aligned_cols=105 Identities=8% Similarity=0.023 Sum_probs=86.1
Q ss_pred CcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCceEEEE
Q 039716 232 PVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFLI 308 (1002)
Q Consensus 232 p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~~~~ 308 (1002)
...+...|.++++.++|..+ .|+.+++++|++..+++++++.+........++..|.....++.+....++..|+..
T Consensus 251 ~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~ 330 (361)
T 4f3l_A 251 EEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQT 330 (361)
T ss_dssp CEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEE
T ss_pred ceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEE
Confidence 45677789999999999876 589999999999999999887777777777888888665566777666666666777
Q ss_pred EEeeeecC-CCCEEEEEEEeechhHHHHH
Q 039716 309 YVEPVFSK-SGETIGVNYMGMDVTDQVRK 336 (1002)
Q Consensus 309 ~~~p~~~~-~G~~~gi~~~~~DITe~~~~ 336 (1002)
...|+++. +|++.+++++..|||++..+
T Consensus 331 ~~~~v~~~~~g~~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 331 HYYITYHQWNSRPEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEEEECCHHHHH
T ss_pred EEEEEEcCCCCCeeEEEEEEEECChhHhh
Confidence 78899997 89999999999999987543
No 192
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=97.50 E-value=3.3e-05 Score=70.04 Aligned_cols=103 Identities=20% Similarity=0.166 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCC---CcccccCCCchhccCccchhhhhHHHHHHHHhCCCc
Q 039716 217 LKRADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSL---HEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPA 290 (1002)
Q Consensus 217 l~~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~---~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~ 290 (1002)
++++..+++.+++++|.+++..|.++++.++|..+ .|+ ..++++|++..+++++.. ...++..+.+.
T Consensus 10 l~~~~~~~~~il~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~ 82 (118)
T 2w0n_A 10 ISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTPR 82 (118)
T ss_dssp HCTTHHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCcee
Confidence 44455667889999999999999999999998764 464 678899999888876532 33455555543
Q ss_pred ceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 291 KREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 291 ~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
.... + .. +..++.+...|+.+ +|.+.|+++++.|||
T Consensus 83 ~~~~-~--~~-~~~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 83 RDEE-I--TI-KDRLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCC-E--ES-SSCEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred ccEE-E--EE-CCEEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 2211 1 11 33567777889987 888889999999987
No 193
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=97.47 E-value=0.00034 Score=66.76 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=74.5
Q ss_pred HHhccCcEEEEec---ccccEEEeeccC---CCCCcccccCCCchhccCccc-----------hhhhhHHHHHHHHhCCC
Q 039716 227 VLQNAPVVMGHQD---KELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAG-----------VKESQDFKREVLEKGLP 289 (1002)
Q Consensus 227 il~~~p~~i~~~d---~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~-----------~~~~~~~~~~vl~~g~~ 289 (1002)
++++ +.+++..| .++++.++|..+ .|++.++++|++..+++++.. ...........+..+.+
T Consensus 31 ~~~~-~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (149)
T 3d72_A 31 PVDT-SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAE 109 (149)
T ss_dssp SCCT-TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCC
T ss_pred hhcC-CccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCc
Confidence 4555 47777788 799999998764 688899999999888876542 23333344556666766
Q ss_pred cceeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeec
Q 039716 290 AKREITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMD 329 (1002)
Q Consensus 290 ~~~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~D 329 (1002)
...++.+....+...++.+...|+++.+|.+.|++++..|
T Consensus 110 ~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 110 VQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred eEEEEEEECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 6666655555455556778889999999999999988766
No 194
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=97.39 E-value=2.2e-05 Score=84.45 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=30.6
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCc---------------cccCcCCCccccHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSA---------------DHARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~---------------~~~~~~~GtGLGLaI~k~Lv 640 (1002)
.|.|.|||+||+++.+...|..+.+... ......|..|+|++-|..++
T Consensus 76 ~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va 138 (269)
T 1qy5_A 76 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA 138 (269)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTE
T ss_pred EEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhcc
Confidence 4689999999999998776644322100 01112245799998776554
No 195
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.38 E-value=0.00073 Score=69.09 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=29.7
Q ss_pred HHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 039716 372 QMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDL 417 (1002)
Q Consensus 372 ~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~ 417 (1002)
+.+....||+.|=|..|.|++++= --++..+|+..+....+.
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~----~ydea~~yI~~~~~~~q~ 64 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQ----KYDRVFEMIEEMVIDAKH 64 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHH
Confidence 467778999999999999998862 224556666655544443
No 196
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.27 E-value=6.5e-05 Score=79.55 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=32.3
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCcc------------ccCcCCCccccHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSAD------------HARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~~------------~~~~~~GtGLGLaI~k~Lv 640 (1002)
.|.|.|||+||+++++...|..+.+.... .....|..|+||+-|..++
T Consensus 95 ~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~ 154 (235)
T 2ior_A 95 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 154 (235)
T ss_dssp EEEEEECSSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCc
Confidence 37899999999999999888665443210 0112356899997664443
No 197
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=97.25 E-value=0.00022 Score=76.59 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=36.3
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCcc----------ccCcCCCccccHHHHHHHHHHhCCEEEEEee
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSAD----------HARKYGGTGLGLAICKQLVELMGGRLTVTSK 652 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~~----------~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~ 652 (1002)
.|.|.|||+||+++++...|..+.+.... .....|..|+|++-|..++ -.+.|.|.
T Consensus 116 ~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va----~~v~V~Sr 181 (264)
T 1yc1_A 116 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA----EKVTVITK 181 (264)
T ss_dssp EEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHE----EEEEEEEE
T ss_pred EEEEEECCcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCC----CEEEEEEe
Confidence 47799999999999998777655433210 1113345799998776654 34555554
No 198
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=97.16 E-value=0.00056 Score=65.16 Aligned_cols=107 Identities=10% Similarity=0.043 Sum_probs=68.7
Q ss_pred HHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCC----C---cc
Q 039716 222 NFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGL----P---AK 291 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~----~---~~ 291 (1002)
..++.+++++|.+|...|.+|++.++|..+ .|++.++++|++..+++++................+. + ..
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPA 86 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEEE
T ss_pred HHHHHHHhcCCceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCCCc
Confidence 457789999999999999999999998764 6889999999999999887543332222222222221 1 12
Q ss_pred eeEEEEEeecCceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 292 REITFETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 292 ~e~~~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
.++.+..+.+...+..+++.|+.+ +... ++++.+|..
T Consensus 87 ~E~~~~rkdG~~~~velsis~i~~--~~~~-~v~~~~~~~ 123 (129)
T 3mfx_A 87 QETTLICASGKAKDVELSISYIPG--HEPM-FVMVMHDLE 123 (129)
T ss_dssp EEEEEECTTSCEEEEEEEEEEECS--SSCE-EEEEEEEC-
T ss_pred eEEEEEcCCCCEEEEEEEEEEecC--CCcE-EEEEEechh
Confidence 455555555555666788888873 3333 334455653
No 199
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.12 E-value=0.0002 Score=72.26 Aligned_cols=105 Identities=14% Similarity=0.148 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEE
Q 039716 219 RADNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREIT 295 (1002)
Q Consensus 219 ~~~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~ 295 (1002)
+...+++.+++++|.++...|.++++.++|..+ .++..++++|++..+++++... ..++..+........
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 149 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-------LRWLESEPQDSHNEH 149 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCH-------HHHHHTCCCSCEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCH-------HHHHhcCCCCCcceE
Confidence 345678899999999999999999999998754 5777788999999998875421 234454432212222
Q ss_pred EEEeecCceEEEEEEeeeecCCCC----EEEEEEEeechhHH
Q 039716 296 FETELFGSKTFLIYVEPVFSKSGE----TIGVNYMGMDVTDQ 333 (1002)
Q Consensus 296 ~~~~~~~~~~~~~~~~p~~~~~G~----~~gi~~~~~DITe~ 333 (1002)
+ .. +...+.+...|+++.+|. +.|++.++.|||+.
T Consensus 150 ~--~~-~g~~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~ 188 (190)
T 2jhe_A 150 V--VI-NGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM 188 (190)
T ss_dssp E--EE-TTEEEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTT
T ss_pred E--EE-CCeEEEEEEEEEEecCCCCcceEEeEEEEEeccchh
Confidence 2 22 335677888999876665 78888888999974
No 200
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.10 E-value=0.00064 Score=77.52 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=80.7
Q ss_pred ccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCC-cceeEEEEEeecCceE
Q 039716 230 NAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLP-AKREITFETELFGSKT 305 (1002)
Q Consensus 230 ~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~-~~~e~~~~~~~~~~~~ 305 (1002)
+....+...|.++++.|++..+ .||.++|++|++..+++++++.+........++..+.+ ...++++....++..|
T Consensus 276 ~~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vW 355 (387)
T 4f3l_B 276 KSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFIT 355 (387)
T ss_dssp CCCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEE
T ss_pred CCceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEE
Confidence 3455778889999999998764 68999999999999999887777666666666655443 3346777776666667
Q ss_pred EEEEEeeeecC-CCCEEEEEEEeechhHHH
Q 039716 306 FLIYVEPVFSK-SGETIGVNYMGMDVTDQV 334 (1002)
Q Consensus 306 ~~~~~~p~~~~-~G~~~gi~~~~~DITe~~ 334 (1002)
+.....++++. +|++.+++++..|||+++
T Consensus 356 v~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk 385 (387)
T 4f3l_B 356 LRSRWFSFMNPWTKEVEYIVSTNTVVLANV 385 (387)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEECC---
T ss_pred EEEEEEEEECCCCCCEEEEEEEEEEcchhh
Confidence 77778889887 899999999999999875
No 201
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=96.90 E-value=0.002 Score=58.61 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=47.2
Q ss_pred HHHHHHhhhccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039716 371 KQMLATMSHEIRSPLTGVVSMAEILSNTKLDREQRQLLGVMISSGDLVLQLINDILDLSK 430 (1002)
Q Consensus 371 k~fla~iSHELRTPL~~I~g~~elL~~~~l~~~~~~~l~~i~~s~~~L~~LIndlLd~sk 430 (1002)
++|++.+|||||||++.|.++++.+... ..+....+...+.+|..++++++++++
T Consensus 61 ~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (115)
T 3zrx_A 61 TLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYLR 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4799999999999999999999987543 246678889999999999999998764
No 202
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=96.88 E-value=0.0011 Score=70.77 Aligned_cols=95 Identities=8% Similarity=0.096 Sum_probs=70.2
Q ss_pred CCCCeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchh
Q 039716 857 KPKPKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDA 936 (1002)
Q Consensus 857 ~~~~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~ 936 (1002)
..+.+|||||||+.++..+..+|...|+.|..+.+ .....||+||+|..||...+.+
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-------~~~~~~~~ii~d~~~~~~~~~~---------------- 65 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-------QEPTPEDVLITDEVVSKKWQGR---------------- 65 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-------CCCCTTCEEEEESSCSCCCCSS----------------
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-------CCCCcCcEEEEcCCCccccccc----------------
Confidence 45679999999999999999999999999988875 1346799999999999764311
Q ss_pred hhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 937 AAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
.++.++....... ...+...++.||+...+|...+.++
T Consensus 66 ----------------------~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~ 103 (254)
T 2ayx_A 66 ----------------------AVVTFCRRHIGIP----LEKAPGEWVHSVAAPHELPALLARI 103 (254)
T ss_dssp ----------------------EEEEECSSCCCSC----CTTSTTEEEECSSCCSHHHHHHHHH
T ss_pred ----------------------eEEEEecccCCCc----ccccCCceeccccchHHHHHHHHHH
Confidence 1444444321100 1235568999999999888888764
No 203
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=96.77 E-value=0.0059 Score=57.71 Aligned_cols=99 Identities=11% Similarity=-0.020 Sum_probs=72.0
Q ss_pred HHHHhccCcEEEEecccccEEEeecc---CCCCCcccccCCCchhcc-CccchhhhhHHHHHHHHhCCCcceeEEEEEee
Q 039716 225 HFVLQNAPVVMGHQDKELRYRFIYNH---FPSLHEEDILGKTDVEIF-SGAGVKESQDFKREVLEKGLPAKREITFETEL 300 (1002)
Q Consensus 225 ~~il~~~p~~i~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~-~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~ 300 (1002)
..+++++|.++...|.++++.++|.. ..|+++++++|++.++.+ +......+.....+.+++|. ......+....
T Consensus 20 ~~~ld~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v~~~ 98 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYTFDY 98 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEEECT
T ss_pred HHHHhccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEEcC
Confidence 34799999999999999999998864 468999999999998754 43444555555666666776 44444444222
Q ss_pred cCceEEEEEEeeeecCCCCEEEEEE
Q 039716 301 FGSKTFLIYVEPVFSKSGETIGVNY 325 (1002)
Q Consensus 301 ~~~~~~~~~~~p~~~~~G~~~gi~~ 325 (1002)
......+.+.+..+.+|..+|+..
T Consensus 99 -~~~p~~v~i~l~~~~~~~~~~i~v 122 (125)
T 1nwz_A 99 -QMTPTKVKVHMKKALSGDSYWVFV 122 (125)
T ss_dssp -TSCCEEEEEEEEECSSSSEEEEEE
T ss_pred -CCCEEEEEEEEEEcCCCCEEEEEE
Confidence 233677788888899999988764
No 204
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=96.72 E-value=0.0087 Score=50.59 Aligned_cols=92 Identities=20% Similarity=0.177 Sum_probs=62.7
Q ss_pred cCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecCceEEE
Q 039716 231 APVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFGSKTFL 307 (1002)
Q Consensus 231 ~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~~~~ 307 (1002)
+|.+|+..|.++++.++|..+ .++..++++|++..++ +. . ..........+..+.+. .+....++..++.
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~-~~-~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 73 (96)
T 3a0s_A 1 METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL-PD-F-EEIGSVAESVFENKEPV----FLNFYKFGERYFN 73 (96)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS-TT-C-HHHHHHHHHHHHHTCCE----EEEEEEETTEEEE
T ss_pred CCceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC-cc-h-HHHHHHHHHHhccCCeE----EEEEEcCCcEEEE
Confidence 367888999999999998764 5778889999998887 32 1 22222334445544432 2333344667788
Q ss_pred EEEeeeecCCCC-EEEEEEEeec
Q 039716 308 IYVEPVFSKSGE-TIGVNYMGMD 329 (1002)
Q Consensus 308 ~~~~p~~~~~G~-~~gi~~~~~D 329 (1002)
+...|+.+.+|. +.|+++++.|
T Consensus 74 ~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 74 IRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEECTTTCCEEEEEEEEEC
T ss_pred EEEEEeEcCCCCeeeEEEEEecC
Confidence 899999988664 6788887765
No 205
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=96.68 E-value=0.0073 Score=57.26 Aligned_cols=98 Identities=7% Similarity=-0.019 Sum_probs=71.5
Q ss_pred HHHhccCcEEEEecccccEEEeecc---CCCCCcccccCCCchhcc-CccchhhhhHHHHHHHHhCCCcceeEEEEEeec
Q 039716 226 FVLQNAPVVMGHQDKELRYRFIYNH---FPSLHEEDILGKTDVEIF-SGAGVKESQDFKREVLEKGLPAKREITFETELF 301 (1002)
Q Consensus 226 ~il~~~p~~i~~~d~~~~~~~~~~~---~~~~~~e~iiGk~~~e~~-~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~ 301 (1002)
.+++++|.++...|.++++.++|.. ..|+++++++|++.++.+ +......+.....+.++.|. ......+....
T Consensus 26 ~~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv~~~- 103 (129)
T 1mzu_A 26 AEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFVFDF- 103 (129)
T ss_dssp TTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEEEEC-
T ss_pred HHHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEEcC-
Confidence 3689999999999999999998864 468999999999998754 43444555555666666766 44444444222
Q ss_pred CceEEEEEEeeeecCCCCEEEEEE
Q 039716 302 GSKTFLIYVEPVFSKSGETIGVNY 325 (1002)
Q Consensus 302 ~~~~~~~~~~p~~~~~G~~~gi~~ 325 (1002)
....+.+.+....+.+|..+|++.
T Consensus 104 ~~~p~~v~i~l~~~~~~~~~~i~v 127 (129)
T 1mzu_A 104 QMAPVRVQIRMQNAGVPDRYWIFV 127 (129)
T ss_dssp SSCEEEEEEEEEECSSTTEEEEEE
T ss_pred CCCEEEEEEEEEEcCCCCEEEEEE
Confidence 233677888888899999988764
No 206
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=96.67 E-value=0.0028 Score=58.55 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=55.4
Q ss_pred HHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCcceeEEEEEeecC
Q 039716 226 FVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPAKREITFETELFG 302 (1002)
Q Consensus 226 ~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~~~e~~~~~~~~~ 302 (1002)
.++++++.+|+..|.+|++.|+|..+ .|+++++++|++..+++++...+..... +...+.....+..+..+.+.
T Consensus 3 ~lle~~~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~---~~~~~~~~~~e~r~~~kdG~ 79 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESY---FYNEHHLMPCTFRFIKKDHT 79 (111)
T ss_dssp ------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHH---HHCSCCSSCEEEEEECTTSC
T ss_pred chhhcCCCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHH---HhccCCCccEEEEEEcCCCC
Confidence 57899999999999999999999864 6899999999999999887665443322 22222223345555555555
Q ss_pred ceEEEEEEeeeecCCC
Q 039716 303 SKTFLIYVEPVFSKSG 318 (1002)
Q Consensus 303 ~~~~~~~~~p~~~~~G 318 (1002)
..|+...+.++.+..+
T Consensus 80 ~~wve~~~~~v~~~~~ 95 (111)
T 2vlg_A 80 IVWVEAAVEIVTTRAE 95 (111)
T ss_dssp EEEEEEEEEEC-----
T ss_pred EEEEEEEEEEEecccC
Confidence 5566677777777544
No 207
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.47 E-value=0.0035 Score=71.18 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=35.6
Q ss_pred EEEEecCCCCCcCc--------HhhhhhhccCCCc---cccCcCCC-ccccHHHHHHHHH
Q 039716 594 CDVYDTGIGIPENA--------LPTLFRKYMQVSA---DHARKYGG-TGLGLAICKQLVE 641 (1002)
Q Consensus 594 i~V~DtGiGI~~e~--------l~~IF~pF~q~~~---~~~~~~~G-tGLGLaI~k~Lve 641 (1002)
|+|.|+|.|||.+. ++.+|..|+.+.. ......+| .|.||+.+.-+.+
T Consensus 65 I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 65 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred EEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCcccccCCccccchHHHHHhhc
Confidence 77999999999998 6788988765432 11122344 8999999988874
No 208
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.28 E-value=0.0075 Score=62.72 Aligned_cols=88 Identities=23% Similarity=0.273 Sum_probs=67.6
Q ss_pred EEEcCHHHHHHHHHcC-CCcEEEEcC-CCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEc
Q 039716 887 DVVNNGVEAVHAVQCQ-NYDLILMDV-CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMT 964 (1002)
Q Consensus 887 ~~a~~G~eAl~~~~~~-~~DlIlmDi-~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalT 964 (1002)
....+..+.+..+... ..+++++++ .++.|+|+. ++.|+.... ..++|||+++
T Consensus 127 ~~~~~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~~-~~~i~~~~~------------------------~~~~Pvia~~ 181 (237)
T 3cwo_X 127 NTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYD-TEMIRFVRP------------------------LTTLPIIASG 181 (237)
T ss_dssp EEEEEHHHHHHHHHHHTCSEEEEEETTTTTCCSCCC-HHHHHHHGG------------------------GCCSCEEEES
T ss_pred ccccCHHHHHHHHhhcCCCeEEEEecCCCCcccccc-HHHHHHHHH------------------------hcCCCEEecC
Confidence 3344566666666554 556999997 788888876 555554321 2368999999
Q ss_pred CCCCHHHHHHHHHcCCCEEE------eCCCChHHHHHHHHh
Q 039716 965 ANALSESAEECFANGMDSFV------SKPVTFQKLKECLEQ 999 (1002)
Q Consensus 965 a~~~~~~~~~~~~aG~d~~l------~KP~~~~~L~~~l~~ 999 (1002)
+....++..+|+++|||+++ .+|+++.++...+.+
T Consensus 182 g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l~~ 222 (237)
T 3cwo_X 182 GAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKK 222 (237)
T ss_dssp CCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999999995 899999999988764
No 209
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=95.13 E-value=0.00089 Score=73.78 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=72.1
Q ss_pred HHhccCcEEEEecccccEEEeeccCCCC-----CcccccCCCchhccCcc---chh--hhhHHHHHHHHh-CCCcceeEE
Q 039716 227 VLQNAPVVMGHQDKELRYRFIYNHFPSL-----HEEDILGKTDVEIFSGA---GVK--ESQDFKREVLEK-GLPAKREIT 295 (1002)
Q Consensus 227 il~~~p~~i~~~d~~~~~~~~~~~~~~~-----~~e~iiGk~~~e~~~~~---~~~--~~~~~~~~vl~~-g~~~~~e~~ 295 (1002)
++++++.+|...|.++++.++|..+..+ ..++++|++..++++.. ... ........++.. +.+...++.
T Consensus 175 ~~~~~~dGIivvD~~G~Ii~~N~aA~~ll~~lG~~~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ei~ 254 (305)
T 2ykf_A 175 SSPRAGDGFIRLDVDGVVSYASPNALSAYHRMGLTTELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMRMEVD 254 (305)
Confidence 5678999999999999999999876443 12688999999887643 110 111222224443 222222211
Q ss_pred EEEeecCceEEEEEEeeeecCCCCEEEEEEEeechhHHHHHHHHH
Q 039716 296 FETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVTDQVRKREKM 340 (1002)
Q Consensus 296 ~~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DITe~~~~~~~~ 340 (1002)
.+..++.+...|+++ +|.+.|++.+++|||+.++.++++
T Consensus 255 -----~~~~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL 293 (305)
T 2ykf_A 255 -----AGGATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRAL 293 (305)
Confidence 134567778889986 588899999999999987766554
No 210
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=96.12 E-value=0.0011 Score=69.39 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=35.0
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCc----------cccCcCCCccccHHHHHHHHHHhCCEEEEEeec
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSA----------DHARKYGGTGLGLAICKQLVELMGGRLTVTSKV 653 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~----------~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~ 653 (1002)
.|.|.|||+||+++++...|....+... ......|--|+||+-+-.+. -++.|.|..
T Consensus 80 ~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~va----d~v~V~Sr~ 146 (228)
T 3t0h_A 80 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA----EKVTVITKH 146 (228)
T ss_dssp EEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTE----EEEEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccC----CEEEEEEec
Confidence 4679999999999998766644322100 11123455689998764432 256666654
No 211
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=95.92 E-value=0.0061 Score=55.17 Aligned_cols=100 Identities=9% Similarity=0.055 Sum_probs=61.8
Q ss_pred ccCcEEEEeccc-ccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHH-hCCCc---ceeEEEEEeec
Q 039716 230 NAPVVMGHQDKE-LRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLE-KGLPA---KREITFETELF 301 (1002)
Q Consensus 230 ~~p~~i~~~d~~-~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~-~g~~~---~~e~~~~~~~~ 301 (1002)
+++.+|+..|.+ +++.++|..+ .|++.++++|++..+++++........+....+. .+... ..++.+....+
T Consensus 6 ~~~~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG 85 (114)
T 1ll8_A 6 EFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSG 85 (114)
T ss_dssp TTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTC
T ss_pred CCCceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEEEecCC
Confidence 455789999999 9999999864 6889999999999998876432211111100111 11111 23444444444
Q ss_pred CceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 302 GSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 302 ~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
...++.++..|+.+..+. +++++..|++
T Consensus 86 ~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 86 EKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp CCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred CEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 455666778888765543 5566777764
No 212
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=95.73 E-value=0.0041 Score=66.75 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=29.1
Q ss_pred EEEEEecCCCCCcCcHhhhhhh--------cc---CCCccccCcCCCccccHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALPTLFRK--------YM---QVSADHARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~p--------F~---q~~~~~~~~~~GtGLGLaI~k~Lv 640 (1002)
.|.|.|||+||+++.+..-+.. |. +........-|-.|+|++-|..++
T Consensus 94 tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~va 152 (281)
T 3peh_A 94 ILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVA 152 (281)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcccc
Confidence 4679999999999997653321 21 100111223466799998775543
No 213
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=95.52 E-value=0.0026 Score=67.54 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=29.7
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCC----------ccccCcCCCccccHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVS----------ADHARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~----------~~~~~~~~GtGLGLaI~k~Lv 640 (1002)
.|.|.|||+||+++++..-|....+.. .......|--|+||+-+..++
T Consensus 108 ~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Va 165 (256)
T 3o0i_A 108 TLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVA 165 (256)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTE
T ss_pred EEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhccC
Confidence 468999999999999876553321100 011123456789998775443
No 214
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=95.50 E-value=0.0033 Score=66.41 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=36.9
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCccc---------------cCcCCCccccHHHHHHHHHHhCCEEEEEeecC
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSADH---------------ARKYGGTGLGLAICKQLVELMGGRLTVTSKVH 654 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~~~---------------~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~~g 654 (1002)
.|.|.|||+||+++++...|..+.+..... ....|..|+|+.-+..++ ..+.|.|...
T Consensus 80 ~i~I~DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va----~~v~V~Sr~~ 152 (236)
T 2gqp_A 80 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA----DKVIVTSKHN 152 (236)
T ss_dssp EEEEEECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTE----EEEEEEEECT
T ss_pred EEEEEECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcC----CEEEEEEeCC
Confidence 468999999999999988886554321100 001123689987666554 6788888764
No 215
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=95.39 E-value=0.016 Score=68.49 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=43.9
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCc------------cccCcCCCccccHHHHHHHHH------Hh-----------
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSA------------DHARKYGGTGLGLAICKQLVE------LM----------- 643 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~------------~~~~~~~GtGLGLaI~k~Lve------~~----------- 643 (1002)
.|+|.|||+||+++++..-|....+... ......|.-|+|++-+..+++ .+
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w 154 (559)
T 1y4s_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFW 154 (559)
T ss_dssp EEEEEECSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEE
Confidence 4679999999999998876654322210 011233566999877766642 11
Q ss_pred ----CCEEEEEe--ecCCceEEEEEEe
Q 039716 644 ----GGRLTVTS--KVHCGSTFTFILP 664 (1002)
Q Consensus 644 ----gG~I~v~S--~~g~GTtF~~~LP 664 (1002)
||...+.. ..+.||++++.|.
T Consensus 155 ~s~g~~~~~i~~~~~~~~GT~I~L~Lk 181 (559)
T 1y4s_A 155 ESAGEGEYTVADITKEDRGTEITLHLR 181 (559)
T ss_dssp EECSSSEEEEEEECCCSCEEEEEEEEC
T ss_pred EEeCCCeeEEeECCCCCCCeEEEEEEc
Confidence 23444442 3467888888874
No 216
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=95.27 E-value=0.01 Score=72.48 Aligned_cols=91 Identities=11% Similarity=0.053 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCeEEEEcCHHHHHHHHHcC-CCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCC
Q 039716 872 VMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQ-NYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950 (1002)
Q Consensus 872 ~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~-~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1002)
...|...|++.||+|..+.++.+|+..++.+ .+++|++|+.|+ +.++++.||..
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~~i~avIld~d~~---~~~ll~~Ir~~---------------------- 73 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKY---NLELCEEISKM---------------------- 73 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHHCTTEEEEEEEHHHH---HHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhCCCceEEEEecccc---HHHHHHHHHHh----------------------
Confidence 3446688999999999999999999999876 499999999997 78999999973
Q ss_pred CCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChH
Q 039716 951 SSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQ 991 (1002)
Q Consensus 951 ~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~ 991 (1002)
...+||++++.....++..-..-.++++|+.+..+-.
T Consensus 74 ----~~~iPVFl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (715)
T 3n75_A 74 ----NENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAA 110 (715)
T ss_dssp ----CTTCEEEEECCTTCCCCGGGTTSCCEEEEECCCTTCH
T ss_pred ----CCCCCEEEEecCCcccccchhhhhccCeEEEeCCCCH
Confidence 3579999999886544433222457899999987543
No 217
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=95.18 E-value=0.063 Score=59.72 Aligned_cols=102 Identities=10% Similarity=0.012 Sum_probs=77.5
Q ss_pred cCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCCc-----ceeEEEEEeecC
Q 039716 231 APVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLPA-----KREITFETELFG 302 (1002)
Q Consensus 231 ~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~~-----~~e~~~~~~~~~ 302 (1002)
....+...+.+|++.+++.++ .|+.++|++|++..+++++++..........++..|... ..++++.+..++
T Consensus 153 ~~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG~ 232 (339)
T 3rty_A 153 SPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGC 232 (339)
T ss_dssp CCEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTSC
T ss_pred CceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCCC
Confidence 355777789999999998865 689999999999999999988877777777888877642 346777776666
Q ss_pred ceEEEEEEeeeecC-CCCEEEEEEEeechhH
Q 039716 303 SKTFLIYVEPVFSK-SGETIGVNYMGMDVTD 332 (1002)
Q Consensus 303 ~~~~~~~~~p~~~~-~G~~~gi~~~~~DITe 332 (1002)
..|+.....++++. ++.+..++++...|+.
T Consensus 233 ~vWlet~~~~~~np~s~~~~~II~~h~vi~~ 263 (339)
T 3rty_A 233 YVLLETEWTSFVNPWSRKLEFVVGHHRVFQG 263 (339)
T ss_dssp EEEEEEEEEEEECTTTCSEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEECCCCCCeeEEEEEEEECCC
Confidence 66666777888885 5666666666655553
No 218
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=94.71 E-value=0.016 Score=69.55 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=42.5
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCC---------Cc-cccCcCCCccccHHHHHHHHH------------------HhC
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQV---------SA-DHARKYGGTGLGLAICKQLVE------------------LMG 644 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~---------~~-~~~~~~~GtGLGLaI~k~Lve------------------~~g 644 (1002)
.|+|.|||+||+++++..-|...-+. .. .....-|..|+|++-|..+++ .-|
T Consensus 74 ~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~ 153 (677)
T 2cg9_A 74 VLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAG 153 (677)
T ss_dssp EEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCC
Confidence 47899999999999987655332111 00 011234557899876643321 113
Q ss_pred CEEEEEe-----ecCCceEEEEEEe
Q 039716 645 GRLTVTS-----KVHCGSTFTFILP 664 (1002)
Q Consensus 645 G~I~v~S-----~~g~GTtF~~~LP 664 (1002)
|...+.. ..+.||++++.|.
T Consensus 154 ~~~ti~~~~~~~~~~~GT~I~L~Lk 178 (677)
T 2cg9_A 154 GSFTVTLDEVNERIGRGTILRLFLK 178 (677)
T ss_dssp SEEEEEECCSSCCCSSEEEEEEEEC
T ss_pred ceEEEeecCCCCCCCCCeEEEEEEc
Confidence 4555654 2356888888874
No 219
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=94.63 E-value=0.0068 Score=63.69 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=29.0
Q ss_pred EEEEEecCCCCCcCcHhhhhh--------hccC---CCccccCcCCCccccHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALPTLFR--------KYMQ---VSADHARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~--------pF~q---~~~~~~~~~~GtGLGLaI~k~Lv 640 (1002)
.|.|.|||+||+++++..-+. .|.. ... ....-|--|+|++-|..++
T Consensus 87 ~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~-d~~~IGqFGvGfySaf~va 144 (239)
T 3nmq_A 87 TLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGA-DISMIGQFGVGFYSAYLVA 144 (239)
T ss_dssp EEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTC-CGGGGGGGTCGGGGGGGTE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhhhcccC-CcccccccCcccccccccC
Confidence 468999999999999843221 1211 111 1223456799998876554
No 220
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=94.58 E-value=0.014 Score=69.86 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=30.5
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCCCc------------cccCcCCCccccHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQVSA------------DHARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~~~------------~~~~~~~GtGLGLaI~k~Lv 640 (1002)
.|+|.|||+||+++++..-|....+... ......|.-|+|++-+..++
T Consensus 75 ~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (624)
T 2ioq_A 75 TLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (624)
T ss_dssp EEEEEECSCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHE
T ss_pred EEEEEECCCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcC
Confidence 4679999999999998776654332210 01111234599998777776
No 221
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=94.54 E-value=0.045 Score=62.03 Aligned_cols=48 Identities=23% Similarity=0.438 Sum_probs=32.8
Q ss_pred EEEEecCCCCCcCc--------HhhhhhhccCCCc---cccCcCCC-ccccHHHHHHHHH
Q 039716 594 CDVYDTGIGIPENA--------LPTLFRKYMQVSA---DHARKYGG-TGLGLAICKQLVE 641 (1002)
Q Consensus 594 i~V~DtGiGI~~e~--------l~~IF~pF~q~~~---~~~~~~~G-tGLGLaI~k~Lve 641 (1002)
|+|.|+|.|||.+. .+-+|..+..+.. ......+| .|.||+.+.-+.+
T Consensus 68 I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 68 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp EEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred EEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCcccccCCccccchHHHHHhcC
Confidence 77999999999998 4457875544321 11112334 7999999888775
No 222
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=94.24 E-value=0.014 Score=70.03 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=37.9
Q ss_pred EEEEEecCCCCCcCcHhhhhhhccCC---------Cc------cccCcCCCccccHHHHHHHHH----------------
Q 039716 593 RCDVYDTGIGIPENALPTLFRKYMQV---------SA------DHARKYGGTGLGLAICKQLVE---------------- 641 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~pF~q~---------~~------~~~~~~~GtGLGLaI~k~Lve---------------- 641 (1002)
.|+|.|||+||+++++..-|...-+. .. .....-|..|+|++-+-.+++
T Consensus 93 ~I~I~DnGiGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W 172 (666)
T 2o1u_A 93 LLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIW 172 (666)
T ss_dssp EEEEEECSCCCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEE
Confidence 36799999999999987765432111 00 011123456899876644431
Q ss_pred -HhCCEEEEEee-----cCCceEEEEEEe
Q 039716 642 -LMGGRLTVTSK-----VHCGSTFTFILP 664 (1002)
Q Consensus 642 -~~gG~I~v~S~-----~g~GTtF~~~LP 664 (1002)
.-||.++++.. .+.||++++.|.
T Consensus 173 ~s~gg~~ti~~~~~~~~~~~GT~I~L~Lk 201 (666)
T 2o1u_A 173 ESDSNEFSVIADPRGNTLGRGTTITLVLK 201 (666)
T ss_dssp EESSSCCEEEECTTCCSSSSEEEEEEEEC
T ss_pred EEeCCeEEEEecccCCCCCCCeEEEEEEc
Confidence 11245555543 357888888874
No 223
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=93.68 E-value=0.79 Score=45.07 Aligned_cols=117 Identities=11% Similarity=0.145 Sum_probs=81.8
Q ss_pred CCCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCC--CHHHHHHHHhcc
Q 039716 858 PKPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVM--DGLKATRLIRSF 928 (1002)
Q Consensus 858 ~~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~ 928 (1002)
.+++||+. |-+.+-..++..+|+..||+|... ...++.++.+....+|+|.+-..|... .--++++.+|+.
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~ 96 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLREL 96 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhc
Confidence 45689988 888899999999999999998853 577888999999999999998877631 112344455541
Q ss_pred ccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 929 EDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+++||+ +-+....++...+.+.|+|.++..=-+..+....+.++
T Consensus 97 -------------------------g~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~ 142 (161)
T 2yxb_A 97 -------------------------GADDIPVV-LGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKL 142 (161)
T ss_dssp -------------------------TCTTSCEE-EEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred -------------------------CCCCCEEE-EeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHH
Confidence 11346665 45566666766788999998665444444444444443
No 224
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=93.62 E-value=0.095 Score=53.75 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=22.1
Q ss_pred EEEEecCCCCCcCcH--------hhh-hhhccCCCcc---ccCcCCCccccHHHHHHHH
Q 039716 594 CDVYDTGIGIPENAL--------PTL-FRKYMQVSAD---HARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 594 i~V~DtGiGI~~e~l--------~~I-F~pF~q~~~~---~~~~~~GtGLGLaI~k~Lv 640 (1002)
|+|.|+|.|||.+.. +.+ +.+....+-. .....|=-|.||+.+..+.
T Consensus 51 i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~s~GfrGeglssinalS 109 (201)
T 3fv5_A 51 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALS 109 (201)
T ss_dssp EEEEECSSCCCCSBCTTCSSBHHHHHHHCC---------------------CHHHHHTE
T ss_pred EEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccccCcccceecchhhccc
Confidence 679999999999984 343 3333222110 1111222588999887765
No 225
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=92.69 E-value=0.17 Score=56.84 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHhhhhhcC
Q 039716 481 DVLRIRQILTNLISNAIKFT 500 (1002)
Q Consensus 481 D~~rL~QIL~NLlsNAIKfT 500 (1002)
|+..+..++.-||.|||+..
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~ 46 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEA 46 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhhHhHH
Confidence 56789999999999999863
No 226
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=92.63 E-value=0.37 Score=52.98 Aligned_cols=96 Identities=7% Similarity=-0.051 Sum_probs=71.5
Q ss_pred cEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCC---cceeEEEEEeecCceEE
Q 039716 233 VVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLP---AKREITFETELFGSKTF 306 (1002)
Q Consensus 233 ~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~---~~~e~~~~~~~~~~~~~ 306 (1002)
..+...+.++++.|++.++ .|+.++|++|++..+++++++..........++..+.. ...++++..+.++..|+
T Consensus 175 ~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwv 254 (317)
T 4dj3_A 175 IFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVIL 254 (317)
T ss_dssp EEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEE
T ss_pred ceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEE
Confidence 5677779999999998764 68999999999999999988887777777778876544 34567777666665666
Q ss_pred EEEEeeeecC-CCCEEEEEEEee
Q 039716 307 LIYVEPVFSK-SGETIGVNYMGM 328 (1002)
Q Consensus 307 ~~~~~p~~~~-~G~~~gi~~~~~ 328 (1002)
.....++++. ++++..+++...
T Consensus 255 et~~~~~~np~s~~~e~II~~h~ 277 (317)
T 4dj3_A 255 DSSWSSFVNPWSRKVSFIIGRHK 277 (317)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEE
T ss_pred EEEEEEEECCCCCcccEEEEEEE
Confidence 6666677775 566655555554
No 227
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=91.73 E-value=0.53 Score=51.53 Aligned_cols=99 Identities=9% Similarity=-0.001 Sum_probs=69.7
Q ss_pred cEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCC-Ccc-eeEEEEEeecCceEEE
Q 039716 233 VVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGL-PAK-REITFETELFGSKTFL 307 (1002)
Q Consensus 233 ~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~-~~~-~e~~~~~~~~~~~~~~ 307 (1002)
..+..-+.++++.|++.++ .|+.++|++|++..+++++++..........++..+. +.. .++++..+.++..|+.
T Consensus 166 ~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwve 245 (309)
T 3gdi_A 166 IFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLD 245 (309)
T ss_dssp EEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEEE
T ss_pred eEEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEEE
Confidence 4677779999999998764 6899999999999999998887777777777777543 333 3566666655555555
Q ss_pred EEEeeeecC-CCCEEEEEEEeechh
Q 039716 308 IYVEPVFSK-SGETIGVNYMGMDVT 331 (1002)
Q Consensus 308 ~~~~p~~~~-~G~~~gi~~~~~DIT 331 (1002)
....++.+. ++++..+++...-++
T Consensus 246 t~~~~~~np~s~~~e~ii~~h~v~~ 270 (309)
T 3gdi_A 246 TSWSSFINPWSRKISFIIGRHKVRV 270 (309)
T ss_dssp EEEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEEEEEECCCCCcccEEEEEEEEcc
Confidence 555666664 566655555544433
No 228
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=91.63 E-value=0.31 Score=43.07 Aligned_cols=102 Identities=17% Similarity=0.245 Sum_probs=76.1
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCC-CCCCHHHHHHHHhccccCCCchhhhh
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCM-PVMDGLKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~M-P~mdG~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
.||+|-.|-..--.++.++....|.+.+...-. ....-|+|+|...+ |. .|++
T Consensus 14 ~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~------~e~~AdlIfCEYlLLPe--------~ifS------------ 67 (121)
T 3q7r_A 14 HVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK------QELSADLVVCEYSLLPR--------EIRS------------ 67 (121)
T ss_dssp EEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC------CCTTEEEEEEEGGGSCT--------TCCC------------
T ss_pred EEEEEecCchhhHHHHHhcCCcceeEEeccccC------CcccceeEEEeeecChH--------HhcC------------
Confidence 588888888777778888877778888775422 13456999999754 42 2332
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYF 1001 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~l 1001 (1002)
.+.....-+|++-..-+++...+.++.|+. ||..|++..-|..+|+.+|
T Consensus 68 ------------~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFL 116 (121)
T 3q7r_A 68 ------------PKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFL 116 (121)
T ss_dssp ------------CTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHH
T ss_pred ------------CCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHH
Confidence 112233457777777788999999999999 9999999999999998775
No 229
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=91.47 E-value=0.48 Score=52.17 Aligned_cols=100 Identities=12% Similarity=0.006 Sum_probs=70.8
Q ss_pred CcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHh-CCCc-ceeEEEEEeecCceEE
Q 039716 232 PVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEK-GLPA-KREITFETELFGSKTF 306 (1002)
Q Consensus 232 p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~-g~~~-~~e~~~~~~~~~~~~~ 306 (1002)
...+..-+.+|++.|++..+ .|+.++|++|++..+++++++..........++.. |.+. ..++++..+.++..|+
T Consensus 176 ~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwv 255 (320)
T 4dj2_A 176 RIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTM 255 (320)
T ss_dssp CEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEE
T ss_pred ceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEE
Confidence 34667779999999998764 68999999999999999988877766666677663 4443 2466776666655555
Q ss_pred EEEEeeeecC-CCCEEEEEEEeechh
Q 039716 307 LIYVEPVFSK-SGETIGVNYMGMDVT 331 (1002)
Q Consensus 307 ~~~~~p~~~~-~G~~~gi~~~~~DIT 331 (1002)
.....++.+. ++++..+++.-.-++
T Consensus 256 et~~~~~~np~s~~~e~II~~h~v~~ 281 (320)
T 4dj2_A 256 DTSWAGFVHPWSRKVAFVLGRHKVRT 281 (320)
T ss_dssp ECEEEEEECTTTCSEEEEEEEEEESS
T ss_pred EEEEEEEECCCCCCccEEEEEEEEcc
Confidence 5555666664 566666666554444
No 230
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=90.08 E-value=0.61 Score=48.37 Aligned_cols=65 Identities=22% Similarity=0.391 Sum_probs=35.9
Q ss_pred EEEEecCCCCCcCcH--------hhhhhhccCCC---ccccCcCCC-ccccHHHHHHHHHHhCCEEEEEeecCCceEEEE
Q 039716 594 CDVYDTGIGIPENAL--------PTLFRKYMQVS---ADHARKYGG-TGLGLAICKQLVELMGGRLTVTSKVHCGSTFTF 661 (1002)
Q Consensus 594 i~V~DtGiGI~~e~l--------~~IF~pF~q~~---~~~~~~~~G-tGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~ 661 (1002)
|+|.|+|.|||.+.. +-+|....... .......+| -|.||+.+.-|.+ .+.|++..+ |..+..
T Consensus 69 i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~svvNAlS~----~l~v~v~r~-g~~~~~ 143 (220)
T 4duh_A 69 VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ----KLELVIQRE-GKIHRQ 143 (220)
T ss_dssp EEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC--------CCCHHHHHHTEE----EEEEEEEET-TEEEEE
T ss_pred EEEEECCcCcccccccccCcchhhheeeecccCCCcCCCccccccCccceecchhccccc----ceEEEEEEC-CEEEEE
Confidence 679999999999975 34553222111 111111223 6899998877654 455655543 455555
Q ss_pred EE
Q 039716 662 IL 663 (1002)
Q Consensus 662 ~L 663 (1002)
.+
T Consensus 144 ~f 145 (220)
T 4duh_A 144 IY 145 (220)
T ss_dssp EE
T ss_pred Ee
Confidence 55
No 231
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=89.58 E-value=3.2 Score=39.41 Aligned_cols=116 Identities=10% Similarity=0.010 Sum_probs=77.0
Q ss_pred CeEEEE----ecCHHHHHHHHHHHHhcCCeEE---EEcCHHHHHHHHHcCCCcEEEEcCCCCCCC--HHHHHHHHhcccc
Q 039716 860 PKILLV----EDNKINVMVAKSMMKQLGHSID---VVNNGVEAVHAVQCQNYDLILMDVCMPVMD--GLKATRLIRSFED 930 (1002)
Q Consensus 860 ~~ILiV----eDn~~n~~~l~~~L~~~g~~v~---~a~~G~eAl~~~~~~~~DlIlmDi~MP~md--G~e~~~~IR~~~~ 930 (1002)
++|++. |-+.+-..++..+|+..||+|. .....++.++.+....+|+|.+-..|..-. --++++.+|+.
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~-- 81 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEA-- 81 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHT--
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhc--
Confidence 456654 4556777889999999999988 346889999999999999999988875311 12345555541
Q ss_pred CCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC-----CHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 931 TGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA-----LSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~-----~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..++++|++=-+-. ..+....+.++|+|.|..---+..+....|.+.
T Consensus 82 -----------------------g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 82 -----------------------GLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp -----------------------TCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred -----------------------CCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 11246665443221 122255688999999986666666666655543
No 232
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=87.43 E-value=3.2 Score=43.63 Aligned_cols=89 Identities=11% Similarity=0.120 Sum_probs=62.6
Q ss_pred cCHHHHHHHHHHHHhcCCeEE--EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCH-----HHHHHHHhccccCCCchhhhh
Q 039716 867 DNKINVMVAKSMMKQLGHSID--VVNNGVEAVHAVQCQNYDLILMDVCMPVMDG-----LKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 867 Dn~~n~~~l~~~L~~~g~~v~--~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG-----~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
|.....+ ....|.+.|+.|. ++.|...|- .+..-.++.| |.+..|.-.| +++++.|++.
T Consensus 120 D~~~tv~-aa~~L~~~Gf~Vlpy~~dd~~~ak-rl~~~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~----------- 185 (265)
T 1wv2_A 120 NVVETLK-AAEQLVKDGFDVMVYTSDDPIIAR-QLAEIGCIAV-MPLAGLIGSGLGICNPYNLRIILEE----------- 185 (265)
T ss_dssp CHHHHHH-HHHHHHTTTCEEEEEECSCHHHHH-HHHHSCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH-----------
T ss_pred CHHHHHH-HHHHHHHCCCEEEEEeCCCHHHHH-HHHHhCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc-----------
Confidence 3333333 3456667799977 445555444 4455677877 7776663333 6788888862
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.++|||+=-+-..+++...|++.|+|+++.
T Consensus 186 ----------------~~vPVI~eGGI~TPsDAa~AmeLGAdgVlV 215 (265)
T 1wv2_A 186 ----------------AKVPVLVDAGVGTASDAAIAMELGCEAVLM 215 (265)
T ss_dssp ----------------CSSCBEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ----------------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 458999988889999999999999999874
No 233
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=87.34 E-value=1 Score=46.86 Aligned_cols=65 Identities=22% Similarity=0.355 Sum_probs=37.0
Q ss_pred EEEEecCCCCCcCc-------HhhhhhhccCCCc---cccCcCCC-ccccHHHHHHHHHHhCCEEEEEeecCCceEEEEE
Q 039716 594 CDVYDTGIGIPENA-------LPTLFRKYMQVSA---DHARKYGG-TGLGLAICKQLVELMGGRLTVTSKVHCGSTFTFI 662 (1002)
Q Consensus 594 i~V~DtGiGI~~e~-------l~~IF~pF~q~~~---~~~~~~~G-tGLGLaI~k~Lve~~gG~I~v~S~~g~GTtF~~~ 662 (1002)
|+|.|+|.|||.+. .+-+|........ ......+| -|.|++.|.-|.+ .+.|++.. .|-.+...
T Consensus 74 i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~svvNALS~----~l~v~v~r-~g~~~~q~ 148 (226)
T 4emv_A 74 LTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSSVVNALSS----WLEVEITR-DGAVYKQR 148 (226)
T ss_dssp EEEEECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHHHHHHTEE----EEEEEEEE-TTEEEEEE
T ss_pred EEEEEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccchhhhhccc----ceEEEEEe-CCcEEEEE
Confidence 67999999999998 6667743322111 11112223 6899998776654 45566554 35555555
Q ss_pred E
Q 039716 663 L 663 (1002)
Q Consensus 663 L 663 (1002)
+
T Consensus 149 f 149 (226)
T 4emv_A 149 F 149 (226)
T ss_dssp E
T ss_pred E
Confidence 5
No 234
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=87.08 E-value=2.1 Score=48.45 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=29.4
Q ss_pred EEEEEecCCCCCcCc--------HhhhhhhccCCC---cc-ccCcCCCccccHHHHHHHH
Q 039716 593 RCDVYDTGIGIPENA--------LPTLFRKYMQVS---AD-HARKYGGTGLGLAICKQLV 640 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~--------l~~IF~pF~q~~---~~-~~~~~~GtGLGLaI~k~Lv 640 (1002)
.|+|.|+|.|||.+. .+-+|.....+. .. .....|=.|.||+.|.-+-
T Consensus 87 ~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~~ykvSgGlhGvGlsvVnAlS 146 (400)
T 1zxm_A 87 LISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 146 (400)
T ss_dssp EEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGCCCCSCCSSCHHHHHHHTE
T ss_pred EEEEEECCCcccCccccccCccchhheeeeecccCCCCCCcccccCCccccceeeeEEec
Confidence 377999999999997 455666322111 11 1112233699999887663
No 235
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=85.77 E-value=0.27 Score=51.81 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=33.9
Q ss_pred EEEEEecCCCCCcCcHhhhhhh--------cc---CCCccccCcCCCccccHHHHHHHHHHhCCEEEEEee
Q 039716 593 RCDVYDTGIGIPENALPTLFRK--------YM---QVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSK 652 (1002)
Q Consensus 593 ~i~V~DtGiGI~~e~l~~IF~p--------F~---q~~~~~~~~~~GtGLGLaI~k~Lve~~gG~I~v~S~ 652 (1002)
.|+|.|||+||+++.+..-|-. |. +........-|-.|+|++-|-.++ -.+.|.|.
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVA----dkV~V~Sk 197 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVS----NRVEVYTK 197 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTE----EEEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccC----CEEEEEEc
Confidence 4789999999999999875522 21 111011123356799998765443 44555554
No 236
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=83.73 E-value=2 Score=43.69 Aligned_cols=29 Identities=7% Similarity=0.239 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHhhhhhcCC---CCeeEEEE
Q 039716 481 DVLRIRQILTNLISNAIKFTP---EGKVGIKL 509 (1002)
Q Consensus 481 D~~rL~QIL~NLlsNAIKfT~---~G~I~I~v 509 (1002)
++..+.+++.-||.||++..- ...|.|.+
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i 59 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVI 59 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEE
Confidence 456788888888888887532 23555544
No 237
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=83.19 E-value=1 Score=50.22 Aligned_cols=57 Identities=7% Similarity=0.071 Sum_probs=48.4
Q ss_pred HHHHHHHHhccCcEEEEecccccEEEeeccC---CCCCcccccCCCchhccCccchhhhh
Q 039716 221 DNFLHFVLQNAPVVMGHQDKELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQ 277 (1002)
Q Consensus 221 ~~~l~~il~~~p~~i~~~d~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~ 277 (1002)
+++.+.++++++..++..|.+|++.|+|..+ .|+++++++|++..+++++.......
T Consensus 85 ~~~~~~~l~a~~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~ 144 (361)
T 4f3l_A 85 EEFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVY 144 (361)
T ss_dssp HHHHHHHHHHTTEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHH
T ss_pred HHHHHHHHHhcCceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHH
Confidence 4567788999999999999999999998865 58899999999999999887655443
No 238
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=81.06 E-value=2.6 Score=39.77 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=62.1
Q ss_pred cCcEEEEecccccEEEeecc--CCCCCc--ccccCCCchhccCccchh--hhhHHHHHHHHhCCCcceeEEEEEeecCce
Q 039716 231 APVVMGHQDKELRYRFIYNH--FPSLHE--EDILGKTDVEIFSGAGVK--ESQDFKREVLEKGLPAKREITFETELFGSK 304 (1002)
Q Consensus 231 ~p~~i~~~d~~~~~~~~~~~--~~~~~~--e~iiGk~~~e~~~~~~~~--~~~~~~~~vl~~g~~~~~e~~~~~~~~~~~ 304 (1002)
..-.+...|.+|.+.++-.. ..++.+ +|++|+...+++.+.+.. ......++|+.+|.....-.+|....++-.
T Consensus 6 ~e~F~sRh~~dGKf~~vDq~~~r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V 85 (132)
T 1oj5_A 6 VESFMTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTML 85 (132)
T ss_dssp CCEEEEEECTTCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEE
T ss_pred ceeeEEeecCCCcEEEEecccccccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEE
Confidence 34567778999999998663 134444 899999999999988755 677778889988876555556655543322
Q ss_pred EEEEEE----eeeecCCCCEEEEEEEeec
Q 039716 305 TFLIYV----EPVFSKSGETIGVNYMGMD 329 (1002)
Q Consensus 305 ~~~~~~----~p~~~~~G~~~gi~~~~~D 329 (1002)
+..... .|..++-.-++++..+.++
T Consensus 86 ~~qT~sk~f~np~t~e~e~Ivs~n~v~r~ 114 (132)
T 1oj5_A 86 SAHTRCKLCYPQSPDMQPFIMGIHIIDRE 114 (132)
T ss_dssp EEEEEEEEECC----CCCEEEEEEEEECC
T ss_pred EEEEEEEEecCCCCCCCCEEEEEEEEEcC
Confidence 222222 2332333445566655544
No 239
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=80.67 E-value=16 Score=38.53 Aligned_cols=101 Identities=11% Similarity=0.090 Sum_probs=71.8
Q ss_pred CCCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCC-CCH-HHHHHHHhcc
Q 039716 858 PKPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPV-MDG-LKATRLIRSF 928 (1002)
Q Consensus 858 ~~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~-mdG-~e~~~~IR~~ 928 (1002)
.+++||++ |-+.+-..++..+|+..||+|... ....+.++.+...+||+|.+-..|+. +.. -++++.+|+.
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~ 201 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLEN 201 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhc
Confidence 35688888 667788889999999999998643 46777888999999999999987764 332 3455666641
Q ss_pred ccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCC
Q 039716 929 EDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKP 987 (1002)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP 987 (1002)
..++||++--+....+. +-..|+|.|-.-+
T Consensus 202 --------------------------~~~~~v~vGG~~~~~~~---~~~igad~~~~da 231 (258)
T 2i2x_B 202 --------------------------GIKIPFACGGGAVNQDF---VSQFALGVYGEEA 231 (258)
T ss_dssp --------------------------TCCCCEEEESTTCCHHH---HHTSTTEEECSST
T ss_pred --------------------------CCCCcEEEECccCCHHH---HHHcCCeEEECCH
Confidence 23478776655555432 3477998776544
No 240
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=79.50 E-value=12 Score=38.81 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCC------CCCCCHHHHHHHHhccccCCCchhhhhhhhcccC
Q 039716 874 VAKSMMKQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVC------MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAM 946 (1002)
Q Consensus 874 ~l~~~L~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~------MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~ 946 (1002)
-+...+++.|..+. .+.+.++|..+. ...+|+|..-+. .+...++++++.++.
T Consensus 120 ~~i~~~~~~g~~v~~~v~t~eea~~a~-~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~------------------- 179 (229)
T 3q58_A 120 SLLTRIRLHGLLAMADCSTVNEGISCH-QKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSH------------------- 179 (229)
T ss_dssp HHHHHHHHTTCEEEEECSSHHHHHHHH-HTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHT-------------------
T ss_pred HHHHHHHHCCCEEEEecCCHHHHHHHH-hCCCCEEEecCccCCCCCcCCCCCHHHHHHHHH-------------------
Confidence 34445566687654 457777776654 457898864221 233456888888884
Q ss_pred CCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 947 PSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 947 ~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
. .+|||+-.+-...++..+++++|+|+++.
T Consensus 180 --------~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 180 --------A-GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp --------T-TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred --------c-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 1 58999999999999999999999999984
No 241
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=78.76 E-value=8.6 Score=39.46 Aligned_cols=101 Identities=11% Similarity=0.008 Sum_probs=70.0
Q ss_pred CCCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEE--cCCCC-CCC-HHHHHHHHh
Q 039716 858 PKPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILM--DVCMP-VMD-GLKATRLIR 926 (1002)
Q Consensus 858 ~~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlm--Di~MP-~md-G~e~~~~IR 926 (1002)
.+.+||+. |-+.+-..++..+|+..||+|... ....+.++.+...+||+|.+ -..|. .+. --++++.+|
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~ 170 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLN 170 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHH
Confidence 35688887 667788889999999999998764 46778889999999999999 88774 222 233455566
Q ss_pred ccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 927 SFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
+.. ...++||++--+-...+ -|-..|+|.|-.
T Consensus 171 ~~~------------------------~~~~v~v~vGG~~~~~~---~a~~iGad~~~~ 202 (215)
T 3ezx_A 171 EEK------------------------LRDSVKCMFGGAPVSDK---WIEEIGADATAE 202 (215)
T ss_dssp HTT------------------------CGGGSEEEEESSSCCHH---HHHHHTCCBCCS
T ss_pred HcC------------------------CCCCCEEEEECCCCCHH---HHHHhCCeEEEC
Confidence 421 11257877665555543 345669998854
No 242
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=78.06 E-value=14 Score=37.59 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=70.2
Q ss_pred CCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCC-CCH-HHHHHHHhccc
Q 039716 859 KPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPV-MDG-LKATRLIRSFE 929 (1002)
Q Consensus 859 ~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~-mdG-~e~~~~IR~~~ 929 (1002)
+.+||++ |-+.+-..++..+|+..||+|... ....+.++.+...+||+|.+-..|+. +.. -++++.+|+..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~ 167 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAG 167 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTT
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcC
Confidence 4578888 777788889999999999998864 35677778888899999999988763 222 33455666421
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
..+++||++--+....+. +...|+|.|..
T Consensus 168 ------------------------~~~~~~v~vGG~~~~~~~---~~~~gad~~~~ 196 (210)
T 1y80_A 168 ------------------------LRDRVKVIVGGAPLSQDF---ADEIGADGYAP 196 (210)
T ss_dssp ------------------------CGGGCEEEEESTTCCHHH---HHHHTCSEECS
T ss_pred ------------------------CCCCCeEEEECCCCCHHH---HHHcCCeEEEC
Confidence 123578777665555433 35679998754
No 243
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=77.14 E-value=18 Score=44.05 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=79.9
Q ss_pred CCCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCC--CHHHHHHHHhcc
Q 039716 858 PKPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVM--DGLKATRLIRSF 928 (1002)
Q Consensus 858 ~~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~ 928 (1002)
.+++|+|. |.+.+-..++..+|+..||+|..- ...++.++.+....+|+|.+-..|..- ..-++++.+|+.
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~Lr~~ 682 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSL 682 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHHHHhc
Confidence 34678876 556677788999999999999764 367899999999999999998776422 224455666642
Q ss_pred ccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 929 EDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
. ..+++|+ +-+-....+...+.+.|+|.|+..=-+..+....+.++
T Consensus 683 G-------------------------~~dv~Vi-vGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~ 728 (762)
T 2xij_A 683 G-------------------------RPDILVM-CGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDD 728 (762)
T ss_dssp T-------------------------CTTSEEE-EEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHH
T ss_pred C-------------------------CCCCEEE-EeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHH
Confidence 1 1245444 44434444667788999999998555665555555443
No 244
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=77.12 E-value=4.2 Score=42.87 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=58.1
Q ss_pred HHHHHhcCCeEE--EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCH-----HHHHHHHhccccCCCchhhhhhhhcccCCC
Q 039716 876 KSMMKQLGHSID--VVNNGVEAVHAVQCQNYDLILMDVCMPVMDG-----LKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948 (1002)
Q Consensus 876 ~~~L~~~g~~v~--~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG-----~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~ 948 (1002)
...|.+.||.|. +..|... ...+..-.++.| |.+-.|.-.| .+.++.|++.
T Consensus 117 a~~L~k~Gf~Vlpy~~~D~~~-ak~l~~~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~-------------------- 174 (268)
T 2htm_A 117 AERLIEEDFLVLPYMGPDLVL-AKRLAALGTATV-MPLAAPIGSGWGVRTRALLELFARE-------------------- 174 (268)
T ss_dssp HHHHHHTTCEECCEECSCHHH-HHHHHHHTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHT--------------------
T ss_pred HHHHHHCCCEEeeccCCCHHH-HHHHHhcCCCEE-EecCccCcCCcccCCHHHHHHHHHh--------------------
Confidence 445556799976 4456544 344444567766 8877775555 3457777751
Q ss_pred CCCCCCCCC-ccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 949 SGSSNHFKR-IPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 949 ~~~~~~~~~-ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
..+ +|||+=-+-..+++...+++.|+|+.+.
T Consensus 175 ------~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlV 206 (268)
T 2htm_A 175 ------KASLPPVVVDAGLGLPSHAAEVMELGLDAVLV 206 (268)
T ss_dssp ------TTTSSCBEEESCCCSHHHHHHHHHTTCCEEEE
T ss_pred ------cCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 135 8999988889999999999999999874
No 245
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=74.98 E-value=12 Score=42.31 Aligned_cols=67 Identities=21% Similarity=0.438 Sum_probs=39.6
Q ss_pred EEEEecCCCCCcCcHhh--------hhhhccCCC---ccccCcCCC-ccccHHHHHHHHHHhCCEEEEEeec-CCceEEE
Q 039716 594 CDVYDTGIGIPENALPT--------LFRKYMQVS---ADHARKYGG-TGLGLAICKQLVELMGGRLTVTSKV-HCGSTFT 660 (1002)
Q Consensus 594 i~V~DtGiGI~~e~l~~--------IF~pF~q~~---~~~~~~~~G-tGLGLaI~k~Lve~~gG~I~v~S~~-g~GTtF~ 660 (1002)
|+|.|+|.|||.+..+. +|....... ....+..+| .|.|.+.|.-|-+ .+.|+... ..|-.+.
T Consensus 100 I~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ykvSGGLhGVG~SvVNALS~----~l~V~v~r~rdGk~y~ 175 (418)
T 1pvg_A 100 IEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST----EFILETADLNVGQKYV 175 (418)
T ss_dssp EEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSCCCCSCCSSCHHHHHHHTEE----EEEEEEEETTTTEEEE
T ss_pred EEEEECCCcccCcccccCCcccceEEEEEEecccccCCCceeccCCccceeeeeeeeccc----eEEEEEEECCCCcEEE
Confidence 67999999999887543 564433211 111112233 6999998776654 35566553 2466666
Q ss_pred EEEe
Q 039716 661 FILP 664 (1002)
Q Consensus 661 ~~LP 664 (1002)
..+-
T Consensus 176 q~f~ 179 (418)
T 1pvg_A 176 QKWE 179 (418)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 246
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=74.39 E-value=2.6 Score=47.41 Aligned_cols=55 Identities=11% Similarity=0.219 Sum_probs=46.4
Q ss_pred HHHHHHHhccCcEEEEeccc-ccEEEeeccC---CCCCcccccCCCchhccCccchhhh
Q 039716 222 NFLHFVLQNAPVVMGHQDKE-LRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKES 276 (1002)
Q Consensus 222 ~~l~~il~~~p~~i~~~d~~-~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~ 276 (1002)
.+.+.++++++.++++.+.+ |++.|++..+ .|++++|++|++.++++++.+...+
T Consensus 86 ~~~~~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~ 144 (387)
T 4f3l_B 86 ELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKV 144 (387)
T ss_dssp HHHHHHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHH
T ss_pred HHHHHHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHH
Confidence 34567899999999999987 9999998864 6899999999999999988765544
No 247
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=73.67 E-value=19 Score=43.63 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=79.0
Q ss_pred CCCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCC--CHHHHHHHHhcc
Q 039716 858 PKPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVM--DGLKATRLIRSF 928 (1002)
Q Consensus 858 ~~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~m--dG~e~~~~IR~~ 928 (1002)
.+++|++. |.+.+-..++..+|+..||+|..- ...++.++.+....+|+|.+-..|..- ..-++++.+|+.
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~L~~~ 674 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKL 674 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHHHHHhc
Confidence 35678877 666677788999999999999764 367899999999999999998776522 234556666652
Q ss_pred ccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHH
Q 039716 929 EDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997 (1002)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l 997 (1002)
. ..+++|+ +-+-....+...+.+.|+|.|+.-=-+..++...+
T Consensus 675 G-------------------------~~~i~Vi-vGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l 717 (727)
T 1req_A 675 G-------------------------RPDILIT-VGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISL 717 (727)
T ss_dssp T-------------------------CTTSEEE-EEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHH
T ss_pred C-------------------------CCCCEEE-EcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHH
Confidence 1 1245444 44444455667789999999987555555544444
No 248
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=73.58 E-value=21 Score=36.99 Aligned_cols=84 Identities=11% Similarity=-0.007 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCC------CCCCCHHHHHHHHhccccCCCchhhhhhhhccc
Q 039716 873 MVAKSMMKQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVC------MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQA 945 (1002)
Q Consensus 873 ~~l~~~L~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~------MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~ 945 (1002)
.-+...+++.|..+. .+.+.++|..+. ....|+|..-+. .+...++++++.++.
T Consensus 119 ~~~i~~~~~~g~~v~~~v~t~eea~~a~-~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~------------------ 179 (232)
T 3igs_A 119 EALLARIHHHHLLTMADCSSVDDGLACQ-RLGADIIGTTMSGYTTPDTPEEPDLPLVKALHD------------------ 179 (232)
T ss_dssp HHHHHHHHHTTCEEEEECCSHHHHHHHH-HTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHH------------------
T ss_pred HHHHHHHHHCCCEEEEeCCCHHHHHHHH-hCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHh------------------
Confidence 334445566687654 457777776654 457898864221 123346888888885
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 946 MPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 946 ~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
. .+|||+-.+-...++..+++++|+|+++.
T Consensus 180 ---------~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 180 ---------A-GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp ---------T-TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ---------c-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 1 58999999999999999999999999984
No 249
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=68.46 E-value=8.8 Score=43.30 Aligned_cols=48 Identities=23% Similarity=0.490 Sum_probs=24.3
Q ss_pred EEEEecCCCCCcCcH--------hhhhhhccCCC---ccccCcCCC-ccccHHHHHHHHH
Q 039716 594 CDVYDTGIGIPENAL--------PTLFRKYMQVS---ADHARKYGG-TGLGLAICKQLVE 641 (1002)
Q Consensus 594 i~V~DtGiGI~~e~l--------~~IF~pF~q~~---~~~~~~~~G-tGLGLaI~k~Lve 641 (1002)
|+|.|+|.|||.+.. +-+|....... .......+| -|.|++.|.-|.+
T Consensus 84 I~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~svVNALS~ 143 (408)
T 3lnu_A 84 CEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVSVVNALST 143 (408)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHHHHHHTEE
T ss_pred EEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccceehhccC
Confidence 679999999999884 34553322211 111112233 6899998887764
No 250
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=66.55 E-value=11 Score=39.28 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=27.0
Q ss_pred CccEEEEcCCCC------HHHHHHHHHcCCCEEEeCCCChHHH
Q 039716 957 RIPIIAMTANAL------SESAEECFANGMDSFVSKPVTFQKL 993 (1002)
Q Consensus 957 ~ipIIalTa~~~------~~~~~~~~~aG~d~~l~KP~~~~~L 993 (1002)
.+||++++.... .+....|+++|+|.++.-.....+.
T Consensus 80 ~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~ 122 (248)
T 1geq_A 80 STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHA 122 (248)
T ss_dssp CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhH
Confidence 478999885332 5788889999999999865554433
No 251
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=60.98 E-value=35 Score=34.26 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=61.1
Q ss_pred EEEEecCH--HHHHHHHHHHHhcCCeEEEE----cCHHHHHHHHHcCCCcEEEEcCCCCCC-------CHHHHHHHHhcc
Q 039716 862 ILLVEDNK--INVMVAKSMMKQLGHSIDVV----NNGVEAVHAVQCQNYDLILMDVCMPVM-------DGLKATRLIRSF 928 (1002)
Q Consensus 862 ILiVeDn~--~n~~~l~~~L~~~g~~v~~a----~~G~eAl~~~~~~~~DlIlmDi~MP~m-------dG~e~~~~IR~~ 928 (1002)
.+++-+.+ .....+...+++.|..+... .+..+.++.+.....|.|.++ |+. .+++.++.+|+.
T Consensus 80 ~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~---~g~~g~~~~~~~~~~i~~l~~~ 156 (211)
T 3f4w_A 80 YVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVH---TGTDQQAAGRKPIDDLITMLKV 156 (211)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEE---CCHHHHHTTCCSHHHHHHHHHH
T ss_pred EEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEc---CCCcccccCCCCHHHHHHHHHH
Confidence 44444433 34455666777778776643 344455566666668888776 332 356777888752
Q ss_pred ccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 929 EDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.+++||++-.+- ..++..+++++|+|.++.
T Consensus 157 --------------------------~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 157 --------------------------RRKARIAVAGGI-SSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp --------------------------CSSCEEEEESSC-CTTTHHHHHTTCCSEEEE
T ss_pred --------------------------cCCCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 135788776655 488999999999999875
No 252
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=60.66 E-value=11 Score=39.99 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=30.2
Q ss_pred CCccEEEEcCCC------CHHHHHHHHHcCCCEEEeCCCChHHHHHH
Q 039716 956 KRIPIIAMTANA------LSESAEECFANGMDSFVSKPVTFQKLKEC 996 (1002)
Q Consensus 956 ~~ipIIalTa~~------~~~~~~~~~~aG~d~~l~KP~~~~~L~~~ 996 (1002)
..+||++|+=.. ......+|.++|+|+++.--..+++....
T Consensus 94 ~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~ 140 (267)
T 3vnd_A 94 PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPF 140 (267)
T ss_dssp TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHH
T ss_pred CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHH
Confidence 468999997532 25678899999999999877766654433
No 253
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=59.01 E-value=64 Score=34.18 Aligned_cols=85 Identities=14% Similarity=0.021 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCeE-EEEcCHHHHHHHHHcCCCcEEEEc---CCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCC
Q 039716 874 VAKSMMKQLGHSI-DVVNNGVEAVHAVQCQNYDLILMD---VCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSS 949 (1002)
Q Consensus 874 ~l~~~L~~~g~~v-~~a~~G~eAl~~~~~~~~DlIlmD---i~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~ 949 (1002)
.+....+.+|..+ ..+.+..|+..+.. ...|+|-+- ...... +++.++.++..-
T Consensus 153 ~l~~~a~~lGl~~lvev~t~ee~~~A~~-~Gad~IGv~~r~l~~~~~-dl~~~~~l~~~v-------------------- 210 (272)
T 3qja_A 153 SMLDRTESLGMTALVEVHTEQEADRALK-AGAKVIGVNARDLMTLDV-DRDCFARIAPGL-------------------- 210 (272)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHH-HTCSEEEEESBCTTTCCB-CTTHHHHHGGGS--------------------
T ss_pred HHHHHHHHCCCcEEEEcCCHHHHHHHHH-CCCCEEEECCCccccccc-CHHHHHHHHHhC--------------------
Confidence 3445556788874 45688888766554 468887764 222222 356677776421
Q ss_pred CCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 950 GSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 950 ~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
...+|+|+-++-...++..++.++|+|+++.
T Consensus 211 -----~~~~pvVaegGI~t~edv~~l~~~GadgvlV 241 (272)
T 3qja_A 211 -----PSSVIRIAESGVRGTADLLAYAGAGADAVLV 241 (272)
T ss_dssp -----CTTSEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred -----cccCEEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 1258999999999999999999999999986
No 254
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=58.15 E-value=30 Score=38.00 Aligned_cols=52 Identities=8% Similarity=0.061 Sum_probs=38.3
Q ss_pred EEEEec-ccccEEEeeccC---CCCCcccccCCCchhccCccchhhhhHHHHHHHHhCCC
Q 039716 234 VMGHQD-KELRYRFIYNHF---PSLHEEDILGKTDVEIFSGAGVKESQDFKREVLEKGLP 289 (1002)
Q Consensus 234 ~i~~~d-~~~~~~~~~~~~---~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~~g~~ 289 (1002)
.+++.+ .+|++.|++..+ .|+++++++|++..+++++.+... .+..+..|.+
T Consensus 5 F~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~----f~~~L~~gl~ 60 (339)
T 3rty_A 5 FCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRAT----FASQITTGIP 60 (339)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHH----HHHHHHTTSC
T ss_pred EEEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHH----HHHHHhcCCC
Confidence 455567 699999998765 589999999999999988765544 2334455544
No 255
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=57.65 E-value=28 Score=36.68 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=31.4
Q ss_pred CccEEEEcCCC------CHHHHHHHHHcCCCEEEeCCCChHHHHHHHH
Q 039716 957 RIPIIAMTANA------LSESAEECFANGMDSFVSKPVTFQKLKECLE 998 (1002)
Q Consensus 957 ~ipIIalTa~~------~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~ 998 (1002)
.+||++|+-.. .......|.++|+|+++.-.+..+++...+.
T Consensus 94 ~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~ 141 (262)
T 2ekc_A 94 DIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKA 141 (262)
T ss_dssp TSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHH
T ss_pred CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 68999986432 1456678999999999998887777655543
No 256
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=54.29 E-value=16 Score=38.60 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=30.1
Q ss_pred CCccEEEEcCC------CCHHHHHHHHHcCCCEEEeCCCChHHHHHHH
Q 039716 956 KRIPIIAMTAN------ALSESAEECFANGMDSFVSKPVTFQKLKECL 997 (1002)
Q Consensus 956 ~~ipIIalTa~------~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l 997 (1002)
..+||++|+-. ........|.++|+|+++.-.+..+++...+
T Consensus 93 ~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~ 140 (268)
T 1qop_A 93 PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFR 140 (268)
T ss_dssp SSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHH
T ss_pred CCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHH
Confidence 35899988622 2256778899999999999887765554443
No 257
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=54.07 E-value=76 Score=33.42 Aligned_cols=112 Identities=8% Similarity=0.054 Sum_probs=73.4
Q ss_pred CCeEEEE----ecCHHHHHHHHHH--------HHhc-CCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCC----CCH
Q 039716 859 KPKILLV----EDNKINVMVAKSM--------MKQL-GHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPV----MDG 918 (1002)
Q Consensus 859 ~~~ILiV----eDn~~n~~~l~~~--------L~~~-g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~----mdG 918 (1002)
+.+|++. |-+.+-..++..+ |+.. ||+|... ...++.++.+...++|+|.+-..|.. +..
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~ 199 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQN 199 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEEeecCCccchHHH
Confidence 4467765 5666777778877 9999 9998653 47788889999999999999998875 222
Q ss_pred H-HHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHH
Q 039716 919 L-KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997 (1002)
Q Consensus 919 ~-e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l 997 (1002)
+ ++++.+|+.. ...++||++=-+.. +...+.+.|+|.|..--....++...|
T Consensus 200 ~~~~i~~L~~~g------------------------~~~~i~vivGG~~~---~~~~a~~iGad~~~~da~~~~~~a~~l 252 (262)
T 1xrs_B 200 MTHLIELLEAEG------------------------LRDRFVLLCGGPRI---NNEIAKELGYDAGFGPGRFADDVATFA 252 (262)
T ss_dssp HHHHHHHHHHTT------------------------CGGGSEEEEECTTC---CHHHHHTTTCSEEECTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcC------------------------CCCCCEEEEECCcC---CHHHHHHcCCeEEECCchHHHHHHHHH
Confidence 2 2344555311 11236665444433 234477889998876555555544443
No 258
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=53.24 E-value=66 Score=38.06 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=74.2
Q ss_pred CCeEEEE----ecCHHHHHHH----HHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCC----CCHH-HHH
Q 039716 859 KPKILLV----EDNKINVMVA----KSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPV----MDGL-KAT 922 (1002)
Q Consensus 859 ~~~ILiV----eDn~~n~~~l----~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~----mdG~-e~~ 922 (1002)
+.+||+. |=+.+-..++ ..+|+..||+|... ...++.++++.+..+|+|.+...|.. |..+ +++
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~EedADVVGLSsLLTt~dihL~~MkevI 681 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELKADAILASTIISHDDIHYKNMKRIH 681 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCchhhHHHHHHHH
Confidence 5688888 4455544333 57899999998753 47899999999999999999988876 3333 345
Q ss_pred HHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHH
Q 039716 923 RLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997 (1002)
Q Consensus 923 ~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l 997 (1002)
+.+|+.. ....+||++= +.....+ -+.+.|+|.|..-.....++...|
T Consensus 682 elLrE~G------------------------lrDkIkVIVG-Ga~~tqd--~AkeIGADa~f~DATeAVeVA~~L 729 (763)
T 3kp1_A 682 ELAVEKG------------------------IRDKIMIGCG-GTQVTPE--VAVKQGVDAGFGRGSKGIHVATFL 729 (763)
T ss_dssp HHHHHTT------------------------CTTTSEEEEE-CTTCCHH--HHHTTTCSEEECTTCCHHHHHHHH
T ss_pred HHHHhcC------------------------CCCCCEEEEE-CCCCCHH--HHHHcCCcEEECCcchHHHHHHHH
Confidence 5565421 1123666653 4333333 356899999987666665554444
No 259
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=52.73 E-value=1.9e+02 Score=29.04 Aligned_cols=92 Identities=9% Similarity=0.022 Sum_probs=49.9
Q ss_pred HHHHHHHHhccCc--EEEEecccccEEEeeccCCCCCcccccCCCchhccCccchhhhhHHHHHHHH--hCCCcceeEEE
Q 039716 221 DNFLHFVLQNAPV--VMGHQDKELRYRFIYNHFPSLHEEDILGKTDVEIFSGAGVKESQDFKREVLE--KGLPAKREITF 296 (1002)
Q Consensus 221 ~~~l~~il~~~p~--~i~~~d~~~~~~~~~~~~~~~~~e~iiGk~~~e~~~~~~~~~~~~~~~~vl~--~g~~~~~e~~~ 296 (1002)
..+|+.++...|. .++..|.+|+ ....... ...|... ....+++..+. .+.+.-.+. +
T Consensus 57 ~~~L~~~~~~~~~~~~i~i~d~~G~-~~~s~~~------~~~~~~~----------~~r~~f~~a~~~~~~~~~is~p-~ 118 (254)
T 3lif_A 57 NERLRALADNLPQLSDVAILDADGQ-LTYASVK------PVPALDN----------SDRSYFRYHRANDDHTLLITGP-I 118 (254)
T ss_dssp HHHHHHHHHHCTTEEEEEEECTTSB-EEEESSS------SEECCBC----------TTSHHHHHHHHCCCCCCEEEEE-E
T ss_pred HHHHHHHHhcCCccceEEEECCCCC-EecCCCC------CCCCCCc----------ccHHHHHHHHhCCCCCeEECCc-e
Confidence 4556666666674 5778899998 3322110 0011111 11234555555 232221111 1
Q ss_pred EEeecCceEEEEEEeeeecCCCCEEEEEEEeechh
Q 039716 297 ETELFGSKTFLIYVEPVFSKSGETIGVNYMGMDVT 331 (1002)
Q Consensus 297 ~~~~~~~~~~~~~~~p~~~~~G~~~gi~~~~~DIT 331 (1002)
.. .....+......|+++.+|++.|++++..++.
T Consensus 119 ~~-~~~g~~~i~~~~pi~~~~g~~~Gvl~~~i~l~ 152 (254)
T 3lif_A 119 QS-RTSGVWVFVVSRRLETTDGKFFGVVVATIESE 152 (254)
T ss_dssp EC-TTTCCEEEEEEEEEECTTCCEEEEEEEEECHH
T ss_pred ec-CCCCcEEEEEEeeeeCCCCCEeEEEEEEECHH
Confidence 11 11234556667899999999999998887764
No 260
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=51.63 E-value=3.7 Score=43.51 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=43.6
Q ss_pred CCeEEEEecC--HHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCC-CCCHHHHHHHHhccc
Q 039716 859 KPKILLVEDN--KINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQCQNYDLILMDVCMP-VMDGLKATRLIRSFE 929 (1002)
Q Consensus 859 ~~~ILiVeDn--~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP-~mdG~e~~~~IR~~~ 929 (1002)
..+||||+++ +.-...+...|++.|+.|+......-......-..||+||++-... ..+- +.++.|+.+-
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l~~-~~~~~L~~yV 76 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMTA-QAIDQLVTMV 76 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGBCH-HHHHHHHHHH
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccCCH-HHHHHHHHHH
Confidence 3589999998 5567788999999999999876432100111124799998873322 2332 4556666543
No 261
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=48.55 E-value=68 Score=33.36 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCCcEEEE-cCC----CCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 039716 893 VEAVHAVQCQNYDLILM-DVC----MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967 (1002)
Q Consensus 893 ~eAl~~~~~~~~DlIlm-Di~----MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~ 967 (1002)
.+....+.....+.|+. ++. +.+. .++.++.+++. ..+|||+..+-.
T Consensus 159 ~e~~~~~~~~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~---------------------------~~ipvia~GGI~ 210 (266)
T 2w6r_A 159 RDWVVEVEKRGAGEILLTSIDRDGTKSGY-DTEMIRFVRPL---------------------------TTLPIIASGGAG 210 (266)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTTCSCC-CHHHHHHHGGG---------------------------CCSCEEEESCCC
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCCC-CHHHHHHHHHH---------------------------cCCCEEEeCCCC
Confidence 44444444455565553 332 2233 27888888852 358999999999
Q ss_pred CHHHHHHHHHcCCCEEEe------CCCChHHHHHHH
Q 039716 968 LSESAEECFANGMDSFVS------KPVTFQKLKECL 997 (1002)
Q Consensus 968 ~~~~~~~~~~aG~d~~l~------KP~~~~~L~~~l 997 (1002)
..++..+++++|+|+++. .|+.+.++.+.+
T Consensus 211 ~~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l 246 (266)
T 2w6r_A 211 KMEHFLEAFLAGADAALAASVFHFREIDMRELKEYL 246 (266)
T ss_dssp SHHHHHHHHHHTCSEEEESTTTC-------------
T ss_pred CHHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHHH
Confidence 999999999999998764 455666665554
No 262
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=48.45 E-value=1.1e+02 Score=31.34 Aligned_cols=79 Identities=22% Similarity=0.247 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCc-EEEEcCC----CCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 039716 893 VEAVHAVQCQNYD-LILMDVC----MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967 (1002)
Q Consensus 893 ~eAl~~~~~~~~D-lIlmDi~----MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~ 967 (1002)
.+.+..+.....+ +++.+.. +.+. .++.++.+++. ..+|||+-.+-.
T Consensus 155 ~e~~~~~~~~G~~~i~~~~~~~~g~~~g~-~~~~i~~l~~~---------------------------~~ipvia~GGI~ 206 (252)
T 1ka9_F 155 VEWAVKGVELGAGEILLTSMDRDGTKEGY-DLRLTRMVAEA---------------------------VGVPVIASGGAG 206 (252)
T ss_dssp HHHHHHHHHHTCCEEEEEETTTTTTCSCC-CHHHHHHHHHH---------------------------CSSCEEEESCCC
T ss_pred HHHHHHHHHcCCCEEEEecccCCCCcCCC-CHHHHHHHHHH---------------------------cCCCEEEeCCCC
Confidence 4444444444556 4445443 2222 28899999862 258999999988
Q ss_pred CHHHHHHHHHcCCCEEEe------CCCChHHHHHHHHh
Q 039716 968 LSESAEECFANGMDSFVS------KPVTFQKLKECLEQ 999 (1002)
Q Consensus 968 ~~~~~~~~~~aG~d~~l~------KP~~~~~L~~~l~~ 999 (1002)
..++..+++++|+|+++. .|+++.++.+.+..
T Consensus 207 ~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l~~ 244 (252)
T 1ka9_F 207 RMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYLAE 244 (252)
T ss_dssp SHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 889999999999999875 57788888777653
No 263
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=47.17 E-value=85 Score=32.25 Aligned_cols=86 Identities=10% Similarity=0.097 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCeEEEEc---CHHHHHHHHHcCCCc-EEEEcCCCCCCCH---------HHHHHHHhccccCCCchhh
Q 039716 871 NVMVAKSMMKQLGHSIDVVN---NGVEAVHAVQCQNYD-LILMDVCMPVMDG---------LKATRLIRSFEDTGNWDAA 937 (1002)
Q Consensus 871 n~~~l~~~L~~~g~~v~~a~---~G~eAl~~~~~~~~D-lIlmDi~MP~mdG---------~e~~~~IR~~~~~~~~~~~ 937 (1002)
+...+...+++.|..+..+- +..++++.+... .| +|.+ +..|+..| ++.++.+|+.
T Consensus 121 ~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~-~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~--------- 189 (248)
T 1geq_A 121 HAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM-TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRI--------- 189 (248)
T ss_dssp GHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH-CSSEEEE-ECCC-------CCCHHHHHHHHHHHHH---------
T ss_pred hHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc-CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhh---------
Confidence 34455667777887765543 446777666544 33 5543 33365443 4466666642
Q ss_pred hhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 938 AEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.++||++-.+-...++..+++.+|+|.++.
T Consensus 190 ------------------~~~pi~~~GGI~~~e~i~~~~~~Gad~viv 219 (248)
T 1geq_A 190 ------------------CRNKVAVGFGVSKREHVVSLLKEGANGVVV 219 (248)
T ss_dssp ------------------CSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ------------------cCCCEEEEeecCCHHHHHHHHHcCCCEEEE
Confidence 248988877777779999999999999885
No 264
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=43.13 E-value=2.4e+02 Score=31.45 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=64.0
Q ss_pred CCeEEEEe----cCHHHHHHHHHHHHhcCCeEE--EEcCHHHHHHHHHcCCCcEEEEcCCCC------------CCCHHH
Q 039716 859 KPKILLVE----DNKINVMVAKSMMKQLGHSID--VVNNGVEAVHAVQCQNYDLILMDVCMP------------VMDGLK 920 (1002)
Q Consensus 859 ~~~ILiVe----Dn~~n~~~l~~~L~~~g~~v~--~a~~G~eAl~~~~~~~~DlIlmDi~MP------------~mdG~e 920 (1002)
+..++++| +.......++.+-+..+..|. .+.+.++|..+.. ...|.|.+-.. | +...++
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~-aGAD~I~vG~g-~Gs~~~tr~~~g~g~p~~~ 233 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE-NGADGIKVGIG-PGSICTTRIVAGVGVPQIT 233 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHH-TTCSEEEECC----------CCSCBCCCHHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHH-cCCCEEEEeCC-CCcCcccccccccchhHHH
Confidence 34566664 223334555555454576665 4788888776654 57898887321 1 123455
Q ss_pred HHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 921 ~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
++..+...- ....+|||+--+-....+..+++.+|++...
T Consensus 234 al~~v~~~~------------------------~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 234 AIEKCSSVA------------------------SKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp HHHHHHHHH------------------------TTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHH------------------------HhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 666665321 0135899999999999999999999999875
No 265
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=43.11 E-value=1.6e+02 Score=31.14 Aligned_cols=93 Identities=11% Similarity=0.052 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCeE-EEEcCHHHHHHHHHcCCCcEEEEcC---CCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCC
Q 039716 873 MVAKSMMKQLGHSI-DVVNNGVEAVHAVQCQNYDLILMDV---CMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948 (1002)
Q Consensus 873 ~~l~~~L~~~g~~v-~~a~~G~eAl~~~~~~~~DlIlmDi---~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~ 948 (1002)
..+......+|..+ ..+.|..|+..++ ...+|+|=+.. .--..| ++.+..+...-
T Consensus 159 ~~l~~~a~~lGl~~lvevh~~eEl~~A~-~~ga~iIGinnr~l~t~~~d-l~~~~~L~~~i------------------- 217 (272)
T 3tsm_A 159 KELEDTAFALGMDALIEVHDEAEMERAL-KLSSRLLGVNNRNLRSFEVN-LAVSERLAKMA------------------- 217 (272)
T ss_dssp HHHHHHHHHTTCEEEEEECSHHHHHHHT-TSCCSEEEEECBCTTTCCBC-THHHHHHHHHS-------------------
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHH-hcCCCEEEECCCCCccCCCC-hHHHHHHHHhC-------------------
Confidence 33444556689874 4578888875554 55788875542 111223 56666665421
Q ss_pred CCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe-----CCCChHH
Q 039716 949 SGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS-----KPVTFQK 992 (1002)
Q Consensus 949 ~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~-----KP~~~~~ 992 (1002)
...+|+|+-++-...++..++.++|+|+++. ||-++..
T Consensus 218 ------p~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~ 260 (272)
T 3tsm_A 218 ------PSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAA 260 (272)
T ss_dssp ------CTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHH
T ss_pred ------CCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHH
Confidence 1358999999999999999999999999986 5555443
No 266
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=42.67 E-value=17 Score=39.40 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=33.1
Q ss_pred HHHhccCcEEEEeccc-ccEEEeecc---CCCCCcccccCCCchhccCccchhhh
Q 039716 226 FVLQNAPVVMGHQDKE-LRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKES 276 (1002)
Q Consensus 226 ~il~~~p~~i~~~d~~-~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~ 276 (1002)
.+++++.-.+++.+.+ |++.|+.+. +.|+.++|++|++.++++++.+...+
T Consensus 19 lll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~ 73 (309)
T 3gdi_A 19 YIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVF 73 (309)
T ss_dssp ----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHH
T ss_pred HHHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHH
Confidence 4678888888999986 999999875 46788999999999999988765443
No 267
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=41.87 E-value=92 Score=32.00 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCCc-EEEEcCCCCC-CC--HHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 039716 892 GVEAVHAVQCQNYD-LILMDVCMPV-MD--GLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967 (1002)
Q Consensus 892 G~eAl~~~~~~~~D-lIlmDi~MP~-md--G~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~ 967 (1002)
..+.+..+....++ ++++++.-.+ .. .++.++++++. ..+|||+-.+-.
T Consensus 153 ~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~---------------------------~~ipvia~GGI~ 205 (253)
T 1thf_D 153 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPL---------------------------TTLPIIASGGAG 205 (253)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGG---------------------------CCSCEEEESCCC
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHHHh---------------------------cCCCEEEECCCC
Confidence 45555666666677 4456654211 12 27888888852 258999999888
Q ss_pred CHHHHHHHHHcCCCEEEe------CCCChHHHHHHHHh
Q 039716 968 LSESAEECFANGMDSFVS------KPVTFQKLKECLEQ 999 (1002)
Q Consensus 968 ~~~~~~~~~~aG~d~~l~------KP~~~~~L~~~l~~ 999 (1002)
..++..+++++|+|.++. .|+++.++...+++
T Consensus 206 ~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~~~~l~~ 243 (253)
T 1thf_D 206 KMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKK 243 (253)
T ss_dssp SHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCChHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 889999999999998764 46677777776653
No 268
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=40.40 E-value=83 Score=37.09 Aligned_cols=101 Identities=13% Similarity=0.109 Sum_probs=68.2
Q ss_pred CCeEEEE----ecCHHHHHHHHHHHHhcCCeEEEE---cCHHHHHHHHHcCCCcEEEEcCCCCCC-C-HHHHHHHHhccc
Q 039716 859 KPKILLV----EDNKINVMVAKSMMKQLGHSIDVV---NNGVEAVHAVQCQNYDLILMDVCMPVM-D-GLKATRLIRSFE 929 (1002)
Q Consensus 859 ~~~ILiV----eDn~~n~~~l~~~L~~~g~~v~~a---~~G~eAl~~~~~~~~DlIlmDi~MP~m-d-G~e~~~~IR~~~ 929 (1002)
+.+||++ |-+.+-..++..+|+..||+|... ....+.++.+....+|+|.+-..|..- + --++++.+|..
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~~Lr~~- 176 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ- 176 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHT-
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHHHHHHc-
Confidence 5678888 666777888999999999998754 467888889999999999999987531 1 11244455531
Q ss_pred cCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHH-HH--HHcCCCEEEe
Q 039716 930 DTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE-EC--FANGMDSFVS 985 (1002)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~-~~--~~aG~d~~l~ 985 (1002)
..++||++--+-...+... ++ .-.|+|.|..
T Consensus 177 -------------------------g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~ 210 (579)
T 3bul_A 177 -------------------------GFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQ 210 (579)
T ss_dssp -------------------------TCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECC
T ss_pred -------------------------CCCCeEEEEccccchhhhhhhhhhcccCCeEEEC
Confidence 2368887666555554332 11 1129888854
No 269
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=40.32 E-value=49 Score=33.19 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=54.8
Q ss_pred HHHHhcCCeE-EEEcCHHHHHHHHHcCCCcEEEEcCCCC-CCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCC
Q 039716 877 SMMKQLGHSI-DVVNNGVEAVHAVQCQNYDLILMDVCMP-VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNH 954 (1002)
Q Consensus 877 ~~L~~~g~~v-~~a~~G~eAl~~~~~~~~DlIlmDi~MP-~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1002)
...+.+|..+ ..+.+..++..... ...|.|++ .| ...|++.++.++..
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~-~G~d~v~v---~~t~~~g~~~~~~l~~~-------------------------- 144 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE-AGAQALKI---FPSSAFGPQYIKALKAV-------------------------- 144 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH-TTCSEEEE---TTHHHHCHHHHHHHHTT--------------------------
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH-CCCCEEEE---ecCCCCCHHHHHHHHHh--------------------------
Confidence 4455667653 23788888876644 56899886 22 12357777777752
Q ss_pred CC-CccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 955 FK-RIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 955 ~~-~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.+ ++||++..+-. .++..+++++|++.+..
T Consensus 145 ~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~v 175 (212)
T 2v82_A 145 LPSDIAVFAVGGVT-PENLAQWIDAGCAGAGL 175 (212)
T ss_dssp SCTTCEEEEESSCC-TTTHHHHHHHTCSEEEE
T ss_pred ccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEE
Confidence 12 58999988876 88899999999999884
No 270
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=40.28 E-value=89 Score=32.44 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=51.9
Q ss_pred EEcCHHHHHHHHHcCCCcEEEEcCCCCC-------CCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccE
Q 039716 888 VVNNGVEAVHAVQCQNYDLILMDVCMPV-------MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960 (1002)
Q Consensus 888 ~a~~G~eAl~~~~~~~~DlIlmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipI 960 (1002)
.+.+..|+..+.. ...|.|.+.-.-|. .-|++.++.++... ...+||
T Consensus 141 S~ht~~Ea~~A~~-~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~-------------------------~~~iPv 194 (243)
T 3o63_A 141 STHDPDQVAAAAA-GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG-------------------------GDDKPW 194 (243)
T ss_dssp EECSHHHHHHHHH-SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC----------------------------CCCE
T ss_pred eCCCHHHHHHHhh-CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc-------------------------cCCCCE
Confidence 4688888776655 57899988543332 23788888887520 136899
Q ss_pred EEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 961 IAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 961 IalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
|++.+- ..++..+++++|++.+..
T Consensus 195 vAiGGI-~~~ni~~~~~aGa~gvav 218 (243)
T 3o63_A 195 FAIGGI-NAQRLPAVLDAGARRIVV 218 (243)
T ss_dssp EEESSC-CTTTHHHHHHTTCCCEEE
T ss_pred EEecCC-CHHHHHHHHHcCCCEEEE
Confidence 999887 678899999999999875
No 271
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=38.16 E-value=91 Score=31.90 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=56.1
Q ss_pred CHHHHHHHHHcCCCc-EEEEcCCC----CCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 039716 891 NGVEAVHAVQCQNYD-LILMDVCM----PVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965 (1002)
Q Consensus 891 ~G~eAl~~~~~~~~D-lIlmDi~M----P~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa 965 (1002)
+..+.+..+....+| ++++++.- .+. .++.+++|++. ..+|||+-.+
T Consensus 147 ~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~-~~~~~~~i~~~---------------------------~~ipvia~GG 198 (244)
T 1vzw_A 147 DLYETLDRLNKEGCARYVVTDIAKDGTLQGP-NLELLKNVCAA---------------------------TDRPVVASGG 198 (244)
T ss_dssp BHHHHHHHHHHTTCCCEEEEEC-------CC-CHHHHHHHHHT---------------------------CSSCEEEESC
T ss_pred CHHHHHHHHHhCCCCEEEEeccCcccccCCC-CHHHHHHHHHh---------------------------cCCCEEEECC
Confidence 556666666666677 55677642 222 37888888852 2589999988
Q ss_pred CCCHHHHHHHHHc---CCCEEEe------CCCChHHHHHHH
Q 039716 966 NALSESAEECFAN---GMDSFVS------KPVTFQKLKECL 997 (1002)
Q Consensus 966 ~~~~~~~~~~~~a---G~d~~l~------KP~~~~~L~~~l 997 (1002)
-...++..+++++ |+|.++. .|+++.++...+
T Consensus 199 I~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 199 VSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEAT 239 (244)
T ss_dssp CCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHHHHHHh
Confidence 8888999999999 9998763 677777766654
No 272
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=38.13 E-value=34 Score=36.26 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCcEEEEcCCC--CCCCH--------------------HHHHHHHhccccCCCchhhhhhhhcccCCCCC
Q 039716 893 VEAVHAVQCQNYDLILMDVCM--PVMDG--------------------LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950 (1002)
Q Consensus 893 ~eAl~~~~~~~~DlIlmDi~M--P~mdG--------------------~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1002)
.+.+..+... .|+|.+++-. |.+|| ++.++.||..
T Consensus 33 ~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~---------------------- 89 (271)
T 1ujp_A 33 LQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL---------------------- 89 (271)
T ss_dssp HHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc----------------------
Q ss_pred CCCCCCCccEEEEcCCCC------HHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Q 039716 951 SSNHFKRIPIIAMTANAL------SESAEECFANGMDSFVSKPVTFQKLKECLEQY 1000 (1002)
Q Consensus 951 ~~~~~~~ipIIalTa~~~------~~~~~~~~~aG~d~~l~KP~~~~~L~~~l~~~ 1000 (1002)
..+||++|+-... ......|.++|+|+++.--+..+++...+...
T Consensus 90 -----~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 90 -----TEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp -----CCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred -----CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
No 273
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=37.45 E-value=1.1e+02 Score=30.64 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=48.9
Q ss_pred EEcCHHHHHHHHHcCCCcEEEEcCCCCC-------CCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccE
Q 039716 888 VVNNGVEAVHAVQCQNYDLILMDVCMPV-------MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960 (1002)
Q Consensus 888 ~a~~G~eAl~~~~~~~~DlIlmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipI 960 (1002)
.+.+..++..+.. ...|.|+++-..|. .-|++.++.++.. ..+||
T Consensus 116 sv~t~~~~~~a~~-~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~---------------------------~~~pv 167 (221)
T 1yad_A 116 SVHSLEEAVQAEK-EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR---------------------------ISIPV 167 (221)
T ss_dssp EECSHHHHHHHHH-TTCSEEEEECCC----------CHHHHHHHHHHH---------------------------CCSCE
T ss_pred EcCCHHHHHHHHh-CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHh---------------------------CCCCE
Confidence 4578888766554 56899988654332 2367777777642 25899
Q ss_pred EEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 961 IAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 961 IalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
++.-+- ..++..+++++|++.+..
T Consensus 168 ia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 168 IAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp EEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred EEECCC-CHHHHHHHHHcCCCEEEE
Confidence 988777 789999999999998764
No 274
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=36.20 E-value=98 Score=33.01 Aligned_cols=90 Identities=27% Similarity=0.256 Sum_probs=0.0
Q ss_pred EEEEecCHHH----HHHHHHHHHhcCCe---EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCc
Q 039716 862 ILLVEDNKIN----VMVAKSMMKQLGHS---IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNW 934 (1002)
Q Consensus 862 ILiVeDn~~n----~~~l~~~L~~~g~~---v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~ 934 (1002)
+||.||+... ...++..-+..|.. -..+.+-.||.+++ ....|.|.+| .|+.-+--++.+.++
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~-~aGaD~I~ld-~~~~~~~k~av~~v~-------- 238 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEAL-EAGADLILLD-NFPLEALREAVRRVG-------- 238 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHH-HHTCSEEEEE-SCCHHHHHHHHHHHT--------
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH-HcCCCEEEEC-CCCHHHHHHHHHHhC--------
Q ss_pred hhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEE
Q 039716 935 DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSF 983 (1002)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~ 983 (1002)
.++|+++ ++....+...+..++|+|.+
T Consensus 239 ---------------------~~ipi~A-sGGIt~eni~~~a~tGvD~I 265 (286)
T 1x1o_A 239 ---------------------GRVPLEA-SGNMTLERAKAAAEAGVDYV 265 (286)
T ss_dssp ---------------------TSSCEEE-ESSCCHHHHHHHHHHTCSEE
T ss_pred ---------------------CCCeEEE-EcCCCHHHHHHHHHcCCCEE
No 275
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=35.47 E-value=72 Score=32.66 Aligned_cols=79 Identities=9% Similarity=0.109 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCCcE-EEEcCCCCCC---CHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 039716 892 GVEAVHAVQCQNYDL-ILMDVCMPVM---DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967 (1002)
Q Consensus 892 G~eAl~~~~~~~~Dl-IlmDi~MP~m---dG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~ 967 (1002)
..+.++.+.....|. ++++..-.++ -+++.++++++. ..+|||+-.+-.
T Consensus 151 ~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~---------------------------~~ipvia~GGI~ 203 (244)
T 2y88_A 151 LWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADR---------------------------TDAPVIASGGVS 203 (244)
T ss_dssp HHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTT---------------------------CSSCEEEESCCC
T ss_pred HHHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHh---------------------------CCCCEEEECCCC
Confidence 356666666666774 4577653222 147888888741 358999999888
Q ss_pred CHHHHHHHHHc---CCCEEEe------CCCChHHHHHHH
Q 039716 968 LSESAEECFAN---GMDSFVS------KPVTFQKLKECL 997 (1002)
Q Consensus 968 ~~~~~~~~~~a---G~d~~l~------KP~~~~~L~~~l 997 (1002)
..++..+++++ |+|.++. .|..+.++...+
T Consensus 204 ~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~~~~~~~~ 242 (244)
T 2y88_A 204 SLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAV 242 (244)
T ss_dssp SHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHHT
T ss_pred CHHHHHHHHhhccCCCCEEEEcHHHHCCCcCHHHHHHHh
Confidence 88999999998 9998764 577777766554
No 276
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=34.86 E-value=2.9e+02 Score=30.43 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=63.9
Q ss_pred CeEEEEe----cCHHHHHHHHHHHHhc-CCeEE--EEcCHHHHHHHHHcCCCcEEEEcCCCCC------------CCHHH
Q 039716 860 PKILLVE----DNKINVMVAKSMMKQL-GHSID--VVNNGVEAVHAVQCQNYDLILMDVCMPV------------MDGLK 920 (1002)
Q Consensus 860 ~~ILiVe----Dn~~n~~~l~~~L~~~-g~~v~--~a~~G~eAl~~~~~~~~DlIlmDi~MP~------------mdG~e 920 (1002)
..++++| +.+.....++.+-+.. +..|. .+.+.++|..+... ..|.|.+-+. |+ ...++
T Consensus 121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a-GAD~I~vG~g-pGs~~~tr~~~g~g~p~~~ 198 (366)
T 4fo4_A 121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA-GVSAVKVGIG-PGSICTTRIVTGVGVPQIT 198 (366)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH-TCSEEEECSS-CSTTBCHHHHHCCCCCHHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc-CCCEEEEecC-CCCCCCcccccCcccchHH
Confidence 4566664 3344445555555554 55544 47888888876654 6888887321 21 23455
Q ss_pred HHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 921 ATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 921 ~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
++..++..-. ...+|||+--+-....+..+++.+|+|....
T Consensus 199 ~l~~v~~~~~------------------------~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 199 AIADAAGVAN------------------------EYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHG------------------------GGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHh------------------------hcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5665553110 1258999999888999999999999998753
No 277
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=34.60 E-value=31 Score=36.57 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=29.1
Q ss_pred CCccEEEEcC------CCCHHHHHHHHHcCCCEEEeCCCChHHHH
Q 039716 956 KRIPIIAMTA------NALSESAEECFANGMDSFVSKPVTFQKLK 994 (1002)
Q Consensus 956 ~~ipIIalTa------~~~~~~~~~~~~aG~d~~l~KP~~~~~L~ 994 (1002)
..+||++||= +.......+|.++|+|++|.-=+.+++..
T Consensus 96 ~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~ 140 (271)
T 3nav_A 96 PETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQ 140 (271)
T ss_dssp TTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCH
T ss_pred CCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 4689999973 23466788999999999998666655533
No 278
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=34.47 E-value=25 Score=38.30 Aligned_cols=51 Identities=10% Similarity=-0.020 Sum_probs=42.2
Q ss_pred HHHhccCcEEEEeccc-ccEEEeecc---CCCCCcccccCCCchhccCccchhhh
Q 039716 226 FVLQNAPVVMGHQDKE-LRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVKES 276 (1002)
Q Consensus 226 ~il~~~p~~i~~~d~~-~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~~~ 276 (1002)
.+++++.-.+++...+ |++.|+++. +.|++.++++|++.++++++.+...+
T Consensus 30 ~~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f 84 (317)
T 4dj3_A 30 HTSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAF 84 (317)
T ss_dssp HHTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHH
T ss_pred HHHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHH
Confidence 4678888888888886 999999875 57899999999999999988765443
No 279
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=34.28 E-value=1.2e+02 Score=29.97 Aligned_cols=68 Identities=25% Similarity=0.359 Sum_probs=49.5
Q ss_pred EEcCHHHHHHHHHcCCCcEEEEcCCCCC-------CCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccE
Q 039716 888 VVNNGVEAVHAVQCQNYDLILMDVCMPV-------MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960 (1002)
Q Consensus 888 ~a~~G~eAl~~~~~~~~DlIlmDi~MP~-------mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipI 960 (1002)
.+.+..++... ....+|.|+++-..|. ..|++.++.++.. .++||
T Consensus 114 ~~~t~~e~~~~-~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------------------------~~~pv 165 (215)
T 1xi3_A 114 SVYSLEEALEA-EKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES---------------------------VKIPV 165 (215)
T ss_dssp EESSHHHHHHH-HHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHH---------------------------CSSCE
T ss_pred ecCCHHHHHHH-HhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh---------------------------CCCCE
Confidence 35777776654 3456899998754443 3578888888752 25789
Q ss_pred EEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 961 IAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 961 IalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
++..+-. .++..+++++|++.+.
T Consensus 166 ia~GGI~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 166 VAIGGIN-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp EEESSCC-TTTHHHHHTTTCSEEE
T ss_pred EEECCcC-HHHHHHHHHcCCCEEE
Confidence 8877665 8888899999999985
No 280
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=33.87 E-value=76 Score=40.75 Aligned_cols=48 Identities=27% Similarity=0.546 Sum_probs=29.2
Q ss_pred EEEEecCCCCCcCcH--------hhhhhhccCCC---ccccCcCCC-ccccHHHHHHHHH
Q 039716 594 CDVYDTGIGIPENAL--------PTLFRKYMQVS---ADHARKYGG-TGLGLAICKQLVE 641 (1002)
Q Consensus 594 i~V~DtGiGI~~e~l--------~~IF~pF~q~~---~~~~~~~~G-tGLGLaI~k~Lve 641 (1002)
|+|.|+|-|||-+.- +-||....... ....+..|| .|.|.+.|.-|-+
T Consensus 95 isV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~ 154 (1177)
T 4gfh_A 95 IEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 154 (1177)
T ss_dssp EEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEE
T ss_pred EEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCC
Confidence 689999999997643 34555443221 111112233 5999999887754
No 281
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=33.68 E-value=1.7e+02 Score=29.79 Aligned_cols=79 Identities=10% Similarity=0.154 Sum_probs=55.4
Q ss_pred CHHHHHHHHHcCCCc-EEEEcCC----CCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 039716 891 NGVEAVHAVQCQNYD-LILMDVC----MPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965 (1002)
Q Consensus 891 ~G~eAl~~~~~~~~D-lIlmDi~----MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa 965 (1002)
+..+....+.....+ +++.++. +.+. ++++++.+++. ..+|||+-.+
T Consensus 145 ~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~---------------------------~~iPvia~GG 196 (241)
T 1qo2_A 145 DPVSLLKRLKEYGLEEIVHTEIEKDGTLQEH-DFSLTKKIAIE---------------------------AEVKVLAAGG 196 (241)
T ss_dssp CHHHHHHHHHTTTCCEEEEEETTHHHHTCCC-CHHHHHHHHHH---------------------------HTCEEEEESS
T ss_pred CHHHHHHHHHhCCCCEEEEEeecccccCCcC-CHHHHHHHHHh---------------------------cCCcEEEECC
Confidence 444544555555666 4444532 3333 38889998862 2489999999
Q ss_pred CCCHHHHHHHHHc-----C-CCEEEe------CCCChHHHHHHH
Q 039716 966 NALSESAEECFAN-----G-MDSFVS------KPVTFQKLKECL 997 (1002)
Q Consensus 966 ~~~~~~~~~~~~a-----G-~d~~l~------KP~~~~~L~~~l 997 (1002)
-...++..++++. | +|+++. .|+++.+++..+
T Consensus 197 I~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~~~~~ 240 (241)
T 1qo2_A 197 ISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMKRYA 240 (241)
T ss_dssp CCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred CCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHHHHHh
Confidence 9989999999998 9 998764 688888777654
No 282
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=33.45 E-value=79 Score=33.18 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=49.7
Q ss_pred CCeEE--EEcCHHHHHHHHHcCCCcEEEEcCCC--C---CCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCC
Q 039716 883 GHSID--VVNNGVEAVHAVQCQNYDLILMDVCM--P---VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHF 955 (1002)
Q Consensus 883 g~~v~--~a~~G~eAl~~~~~~~~DlIlmDi~M--P---~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1002)
|..+. ++.+..++... .....|.|+. +.- + +..+.+.++++|+.
T Consensus 126 g~~vi~~~~~~~~~a~~~-~~~gad~v~~-~~~~~Gt~~~~~~~~~l~~i~~~--------------------------- 176 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKL-EELGVHAIMP-GASPIGSGQGILNPLNLSFIIEQ--------------------------- 176 (264)
T ss_dssp TCCEEEEECSCHHHHHHH-HHHTCSCBEE-CSSSTTCCCCCSCHHHHHHHHHH---------------------------
T ss_pred CeEEEEEcCCCHHHHHHH-HHhCCCEEEE-CCcccCCCCCCCCHHHHHHHHhc---------------------------
Confidence 76655 34566555444 3345666622 110 0 12347788888852
Q ss_pred CCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 956 KRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 956 ~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
..+|||+..+-...++..+++++|+|.++.
T Consensus 177 ~~iPviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 177 AKVPVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp CSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 358999999988899999999999999885
No 283
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=33.13 E-value=77 Score=33.01 Aligned_cols=41 Identities=7% Similarity=0.144 Sum_probs=25.3
Q ss_pred CCccEEEEcCCCCHH---HHHHHHHcCCCEEEeCCCChHHHHHHH
Q 039716 956 KRIPIIAMTANALSE---SAEECFANGMDSFVSKPVTFQKLKECL 997 (1002)
Q Consensus 956 ~~ipIIalTa~~~~~---~~~~~~~aG~d~~l~KP~~~~~L~~~l 997 (1002)
.++|+++|+-. ... ....|.++|+|+++.-....+++...+
T Consensus 93 ~~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~ 136 (262)
T 1rd5_A 93 LSCPVVLLSYY-KPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLW 136 (262)
T ss_dssp CSSCEEEECCS-HHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHH
T ss_pred CCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHH
Confidence 35899988622 221 123499999999998655544444443
No 284
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=32.63 E-value=1.3e+02 Score=30.75 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=26.6
Q ss_pred CccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 957 RIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.+||++...-.+.++..+++++|+|.++.
T Consensus 75 ~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 75 FIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp CSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 58999999999999999999999998775
No 285
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=32.24 E-value=1.4e+02 Score=29.80 Aligned_cols=67 Identities=16% Similarity=0.323 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHhccC
Q 039716 166 DTVEYWKQRALDLEKMLEASGQREQAL---MEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAP 232 (1002)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~e~~l---~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~il~~~p 232 (1002)
-+-.||+.-|......|...++.-..| .+.+.+.+..|+..+.+++++.+.+......+..++...|
T Consensus 94 Pse~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~ 163 (209)
T 2wvr_A 94 PSSQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPL 163 (209)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 345699999988777777766655554 3445566666666555555555555444444544444433
No 286
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=31.32 E-value=2.2e+02 Score=28.67 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCCcEE-EEcCCCCCC---CHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCC
Q 039716 892 GVEAVHAVQCQNYDLI-LMDVCMPVM---DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANA 967 (1002)
Q Consensus 892 G~eAl~~~~~~~~DlI-lmDi~MP~m---dG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~ 967 (1002)
..+.+..+.....|.| ++++.-.++ -.++.++.+++. ..+||++-.+-.
T Consensus 156 ~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~---------------------------~~~pvia~GGi~ 208 (253)
T 1h5y_A 156 AVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADS---------------------------VRIPVIASGGAG 208 (253)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHH---------------------------CSSCEEEESCCC
T ss_pred HHHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHh---------------------------cCCCEEEeCCCC
Confidence 3444444444456655 444442111 136778888752 258999988888
Q ss_pred CHHHHHHHHHcCCCEEEe------CCCChHHHHHHHHh
Q 039716 968 LSESAEECFANGMDSFVS------KPVTFQKLKECLEQ 999 (1002)
Q Consensus 968 ~~~~~~~~~~aG~d~~l~------KP~~~~~L~~~l~~ 999 (1002)
..++..+++++|+|.++. .+.++.++.+.+++
T Consensus 209 ~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~l~~ 246 (253)
T 1h5y_A 209 RVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLKE 246 (253)
T ss_dssp SHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 789999999999999874 56777777777654
No 287
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=31.17 E-value=2e+02 Score=30.47 Aligned_cols=104 Identities=23% Similarity=0.292 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCCeEEE-----EcCHHHHHHHHHcCCCcEEEE---------cCCC--C-------CCCH-------H
Q 039716 870 INVMVAKSMMKQLGHSIDV-----VNNGVEAVHAVQCQNYDLILM---------DVCM--P-------VMDG-------L 919 (1002)
Q Consensus 870 ~n~~~l~~~L~~~g~~v~~-----a~~G~eAl~~~~~~~~DlIlm---------Di~M--P-------~mdG-------~ 919 (1002)
...++++.+-+..+..|.+ +.+..+....+.....|.|.+ +..- | ++.| +
T Consensus 151 ~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~ 230 (311)
T 1ep3_A 151 VAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVAL 230 (311)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHH
Confidence 3455555555444654443 134466666677777888777 3311 1 1122 4
Q ss_pred HHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEE------eCCCChHHH
Q 039716 920 KATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV------SKPVTFQKL 993 (1002)
Q Consensus 920 e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l------~KP~~~~~L 993 (1002)
++++.+++. .++|||+.-+-.+.++..+++++|+|.+. .-|.-+.++
T Consensus 231 ~~i~~i~~~---------------------------~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i 283 (311)
T 1ep3_A 231 KLIHQVAQD---------------------------VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKI 283 (311)
T ss_dssp HHHHHHHTT---------------------------CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHH
T ss_pred HHHHHHHHh---------------------------cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHH
Confidence 667777641 25899998888899999999999998764 456666777
Q ss_pred HHHHHhh
Q 039716 994 KECLEQY 1000 (1002)
Q Consensus 994 ~~~l~~~ 1000 (1002)
..-+.+|
T Consensus 284 ~~~l~~~ 290 (311)
T 1ep3_A 284 IDKLPEL 290 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 288
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.36 E-value=1.5e+02 Score=33.89 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=42.0
Q ss_pred cccchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHhhhhhc
Q 039716 69 DKGSSQMAYLVKHWEYRQSNAVRLLREELDNLSRQRQESELKKLEILEEH 118 (1002)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (1002)
|-.-=+|+.|+-.+|-.=.|.+.-||.+|+.+++-|+++++--..+.++.
T Consensus 45 CPSGCrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~L 94 (562)
T 3ghg_A 45 CPSGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEIL 94 (562)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcccchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 33445899999999999999999999999999999999998766655554
No 289
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=30.17 E-value=29 Score=37.77 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=40.4
Q ss_pred HHHhccCcEEEEeccc-ccEEEeecc---CCCCCcccccCCCchhccCccchh
Q 039716 226 FVLQNAPVVMGHQDKE-LRYRFIYNH---FPSLHEEDILGKTDVEIFSGAGVK 274 (1002)
Q Consensus 226 ~il~~~p~~i~~~d~~-~~~~~~~~~---~~~~~~e~iiGk~~~e~~~~~~~~ 274 (1002)
.+|+++.-.+.+...+ |++.|+.+. +.|+..++++|++.++++++.+..
T Consensus 30 ~lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~ 82 (320)
T 4dj2_A 30 YTLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVG 82 (320)
T ss_dssp HTTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHH
T ss_pred HHHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHH
Confidence 3688888888888875 999999775 568899999999999999876544
No 290
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=29.61 E-value=70 Score=36.30 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=35.0
Q ss_pred CCeEEEEecCHH---HHHHHHHHHHhcCCeEEEEcC---H----HHHHHHHHcCCCcEEEEcCCCCCC
Q 039716 859 KPKILLVEDNKI---NVMVAKSMMKQLGHSIDVVNN---G----VEAVHAVQCQNYDLILMDVCMPVM 916 (1002)
Q Consensus 859 ~~~ILiVeDn~~---n~~~l~~~L~~~g~~v~~a~~---G----~eAl~~~~~~~~DlIlmDi~MP~m 916 (1002)
+.+||+||-++. ....+...-...|..+..+.. . .++++.+....||+||+|. |+.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDT--pG~ 194 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDT--AGR 194 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEEC--CCC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC--CCc
Confidence 568999998862 233333344455666655432 2 3455566667899999998 544
No 291
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=28.69 E-value=2.1e+02 Score=31.45 Aligned_cols=91 Identities=18% Similarity=0.101 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCCeEE--EEcCHHHHHHHHHcCCCcEEEEcCCCC------------CCCHHHHHHHHhccccCCCc
Q 039716 869 KINVMVAKSMMKQLGHSID--VVNNGVEAVHAVQCQNYDLILMDVCMP------------VMDGLKATRLIRSFEDTGNW 934 (1002)
Q Consensus 869 ~~n~~~l~~~L~~~g~~v~--~a~~G~eAl~~~~~~~~DlIlmDi~MP------------~mdG~e~~~~IR~~~~~~~~ 934 (1002)
......++.+-+..+..|. .+.+..+|..+. ....|.|.+-+. | +...++++..++..-.
T Consensus 131 ~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~-~aGaD~I~VG~~-~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~---- 204 (361)
T 3khj_A 131 LNIIRTLKEIKSKMNIDVIVGNVVTEEATKELI-ENGADGIKVGIG-PGSICTTRIVAGVGVPQITAIEKCSSVAS---- 204 (361)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHH-HTTCSEEEECSS-CCTTCCHHHHTCBCCCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHH-HcCcCEEEEecC-CCcCCCcccccCCCCCcHHHHHHHHHHHh----
Confidence 3344556665555576655 467777776554 456888887311 1 1234555555543110
Q ss_pred hhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 935 DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
...+|||+--+-...++..+++.+|+|....
T Consensus 205 --------------------~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 205 --------------------KFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp --------------------HHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred --------------------hcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 0248999998888999999999999998753
No 292
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.68 E-value=76 Score=31.91 Aligned_cols=70 Identities=13% Similarity=0.065 Sum_probs=48.3
Q ss_pred EEEcCHHHHHHHHHcCCCcEEEEcCCCCC--------CCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCc
Q 039716 887 DVVNNGVEAVHAVQCQNYDLILMDVCMPV--------MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRI 958 (1002)
Q Consensus 887 ~~a~~G~eAl~~~~~~~~DlIlmDi~MP~--------mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 958 (1002)
..+.+..|+..+. ...|.|+++-.-|. .-|++.++.++.. ....+
T Consensus 93 ~s~~t~~e~~~A~--~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~-------------------------~~~~i 145 (210)
T 3ceu_A 93 CSCHSVEEVKNRK--HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKA-------------------------KIIDS 145 (210)
T ss_dssp EEECSHHHHHTTG--GGSSEEEECCCC---------CCCCHHHHHHHHHT-------------------------TCSST
T ss_pred EecCCHHHHHHHh--hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHh-------------------------cCCCC
Confidence 3467888876664 56899988765432 2367777777641 00358
Q ss_pred cEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 959 PIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 959 pIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
|||++-+-. .+...+++++|++++-
T Consensus 146 PviaiGGI~-~~nv~~~~~~Ga~gVa 170 (210)
T 3ceu_A 146 KVMALGGIN-EDNLLEIKDFGFGGAV 170 (210)
T ss_dssp TEEEESSCC-TTTHHHHHHTTCSEEE
T ss_pred CEEEECCCC-HHHHHHHHHhCCCEEE
Confidence 999977665 7888999999999873
No 293
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=28.59 E-value=64 Score=33.13 Aligned_cols=70 Identities=21% Similarity=0.201 Sum_probs=43.0
Q ss_pred CHHHHHHHHHcCCCcEEEEcC---CC-C-CCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEE--EE
Q 039716 891 NGVEAVHAVQCQNYDLILMDV---CM-P-VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPII--AM 963 (1002)
Q Consensus 891 ~G~eAl~~~~~~~~DlIlmDi---~M-P-~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipII--al 963 (1002)
+-.++++.+.+...|+|=+|+ +. | -..|.+.++.||+. .+.|+. +|
T Consensus 18 ~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~---------------------------~~~~~~vhlm 70 (230)
T 1tqj_A 18 RLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPL---------------------------TKKTLDVHLM 70 (230)
T ss_dssp GHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGG---------------------------CCSEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhh---------------------------cCCcEEEEEE
Confidence 444556655555555554444 21 1 23467999999963 124555 77
Q ss_pred cCCCCHHHHHHHHHcCCCEEEeCCC
Q 039716 964 TANALSESAEECFANGMDSFVSKPV 988 (1002)
Q Consensus 964 Ta~~~~~~~~~~~~aG~d~~l~KP~ 988 (1002)
+.+ .......|.++|+|.+..-..
T Consensus 71 v~d-p~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 71 IVE-PEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp SSS-GGGTHHHHHHHTCSEEEEECS
T ss_pred ccC-HHHHHHHHHHcCCCEEEECcc
Confidence 744 345678899999998866555
No 294
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=28.56 E-value=56 Score=32.73 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=47.3
Q ss_pred HHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHH
Q 039716 894 EAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAE 973 (1002)
Q Consensus 894 eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~ 973 (1002)
-+++.+...+||+| =.||+.-- ++++.+++. ..+|||+=-.-.+.++..
T Consensus 118 ~~~~~i~~~~PD~i---EiLPGi~p-~iI~~i~~~---------------------------~~~PiIaGGlI~~~edv~ 166 (192)
T 3kts_A 118 KGVALIQKVQPDCI---ELLPGIIP-EQVQKMTQK---------------------------LHIPVIAGGLIETSEQVN 166 (192)
T ss_dssp HHHHHHHHHCCSEE---EEECTTCH-HHHHHHHHH---------------------------HCCCEEEESSCCSHHHHH
T ss_pred HHHHHHhhcCCCEE---EECCchhH-HHHHHHHHh---------------------------cCCCEEEECCcCCHHHHH
Confidence 46777788889987 22576553 678888753 258999988888999999
Q ss_pred HHHHcCCCEEEe
Q 039716 974 ECFANGMDSFVS 985 (1002)
Q Consensus 974 ~~~~aG~d~~l~ 985 (1002)
+|+++||+..-+
T Consensus 167 ~al~aGA~aVsT 178 (192)
T 3kts_A 167 QVIASGAIAVTT 178 (192)
T ss_dssp HHHTTTEEEEEE
T ss_pred HHHHcCCeEEEe
Confidence 999999998754
No 295
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=28.23 E-value=2.2e+02 Score=28.46 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=50.1
Q ss_pred CCeEEEEe------cCHHHHHHHHHHHHhcCCeEEEE----cCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhc
Q 039716 859 KPKILLVE------DNKINVMVAKSMMKQLGHSIDVV----NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRS 927 (1002)
Q Consensus 859 ~~~ILiVe------Dn~~n~~~l~~~L~~~g~~v~~a----~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~ 927 (1002)
+.+|++|+ |...+...+...|+++|+++... .+..+..+.+.. .|.|++ |+-+-+.+++.++.
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~--ad~I~l----~GG~~~~l~~~L~~ 99 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK--NDFIYV----TGGNTFFLLQELKR 99 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH--SSEEEE----CCSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh--CCEEEE----CCCCHHHHHHHHHH
Confidence 46899996 44458888899999999999888 477777777764 688886 88888888887775
No 296
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=28.05 E-value=1.7e+02 Score=29.36 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=46.6
Q ss_pred EcCHHHHHHHHHcCCCcEEEEcCCCC--------CCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccE
Q 039716 889 VNNGVEAVHAVQCQNYDLILMDVCMP--------VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPI 960 (1002)
Q Consensus 889 a~~G~eAl~~~~~~~~DlIlmDi~MP--------~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipI 960 (1002)
+.+..++.... ...+|.|++....| ...|++.++.+++. .+++||
T Consensus 123 ~~t~~e~~~a~-~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~--------------------------~~~~pv 175 (227)
T 2tps_A 123 AHTMSEVKQAE-EDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ--------------------------GISIPI 175 (227)
T ss_dssp ECSHHHHHHHH-HHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT--------------------------TCCCCE
T ss_pred cCCHHHHHHHH-hCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHh--------------------------CCCCCE
Confidence 47777765544 45689998622112 12367888888752 123899
Q ss_pred EEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 961 IAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 961 IalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
++.-+-. .++..+++++|++.+..
T Consensus 176 ia~GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 176 VGIGGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp EEESSCC-TTTSHHHHHTTCSEEEE
T ss_pred EEEcCCC-HHHHHHHHHcCCCEEEE
Confidence 9877666 88888899999998763
No 297
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=27.75 E-value=1.3e+02 Score=31.03 Aligned_cols=41 Identities=32% Similarity=0.383 Sum_probs=30.5
Q ss_pred CccEEEEcCCCCHHHHHHHHHcCCCEEEeC--CC----ChHHHHHHH
Q 039716 957 RIPIIAMTANALSESAEECFANGMDSFVSK--PV----TFQKLKECL 997 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~aG~d~~l~K--P~----~~~~L~~~l 997 (1002)
.+||++..+-.+.++..+++++|+|..+.= ++ +++.++..+
T Consensus 74 ~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~~~~~~~~~~~~~ 120 (266)
T 2w6r_A 74 TLPIIASGGAGKMEHFLEAFLAGADKALAASVFHFREIDMRELKEYL 120 (266)
T ss_dssp CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC------CHHHHHHC
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHhCCCCHHHHHHHH
Confidence 589999988888889999999999998753 23 455565543
No 298
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=27.49 E-value=3.5e+02 Score=28.91 Aligned_cols=81 Identities=20% Similarity=0.136 Sum_probs=57.0
Q ss_pred HHHHhcCCeEEE-EcCHHHHHHHHHcCCCcEEEEcCCCC----C---CCHHHHHHHHhccccCCCchhhhhhhhcccCCC
Q 039716 877 SMMKQLGHSIDV-VNNGVEAVHAVQCQNYDLILMDVCMP----V---MDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPS 948 (1002)
Q Consensus 877 ~~L~~~g~~v~~-a~~G~eAl~~~~~~~~DlIlmDi~MP----~---mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~ 948 (1002)
..+++.|..+.. +.+..+|..... ...|.|+++-.-+ + ...+++++.++..
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~-~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~-------------------- 170 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAER-LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR-------------------- 170 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH-TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT--------------------
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHH-cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHh--------------------
Confidence 445556766543 678888776554 5688888753211 1 2567788888741
Q ss_pred CCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 949 SGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 949 ~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.++|||+-.+-.+.++..+++..|+|.+..
T Consensus 171 -------~~iPviaaGGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 171 -------LRVPIIASGGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp -------CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred -------cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 258999988888899999999999998763
No 299
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=27.38 E-value=40 Score=35.97 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=46.7
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHc--CCCcEEEEcCCCCC-CCHHHHHHHHh
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLGHSIDVVNNGVEAVHAVQC--QNYDLILMDVCMPV-MDGLKATRLIR 926 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g~~v~~a~~G~eAl~~~~~--~~~DlIlmDi~MP~-mdG~e~~~~IR 926 (1002)
-++.+||-++.....|+.-++...-.-....|+.+++..+.. .+|||||+|----. .+.-.++..|.
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~ 183 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIK 183 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHH
Confidence 479999999999999988887643233445799999987754 36999999963221 23344444454
No 300
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=26.66 E-value=29 Score=34.73 Aligned_cols=34 Identities=21% Similarity=0.080 Sum_probs=20.6
Q ss_pred CccEEE--EcCCCCHHHHHHHHHcCCCEEEeCCCCh
Q 039716 957 RIPIIA--MTANALSESAEECFANGMDSFVSKPVTF 990 (1002)
Q Consensus 957 ~ipIIa--lTa~~~~~~~~~~~~aG~d~~l~KP~~~ 990 (1002)
..||++ ++.+........+.++|+|.+..-|...
T Consensus 53 ~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~ 88 (207)
T 3ajx_A 53 DKIVFADMKTMDAGELEADIAFKAGADLVTVLGSAD 88 (207)
T ss_dssp TSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCC
Confidence 456664 5543223336778888888777656543
No 301
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=26.61 E-value=2.2e+02 Score=30.69 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=56.8
Q ss_pred HHHHhcCCeEEE-EcCHHHHHHHHHcCCCcEEEEcCCCC-----CCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCC
Q 039716 877 SMMKQLGHSIDV-VNNGVEAVHAVQCQNYDLILMDVCMP-----VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSG 950 (1002)
Q Consensus 877 ~~L~~~g~~v~~-a~~G~eAl~~~~~~~~DlIlmDi~MP-----~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1002)
..++..|..+.. +.+..+|..+. ....|.|+++-.-+ ....+++++.++..
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~-~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~---------------------- 174 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVE-RAGADAVIAEGMESGGHIGEVTTFVLVNKVSRS---------------------- 174 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHH-HTTCSCEEEECTTSSEECCSSCHHHHHHHHHHH----------------------
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHH-HcCCCEEEEECCCCCccCCCccHHHHHHHHHHH----------------------
Confidence 445566776554 57777776554 45588888753211 12457788887742
Q ss_pred CCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 951 SSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 951 ~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.++|||+-.+-.+.++..+++.+|++.+..
T Consensus 175 -----~~iPviaaGGI~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 175 -----VNIPVIAAGGIADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp -----CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred -----cCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 258999999988899999999999998763
No 302
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=26.17 E-value=98 Score=31.27 Aligned_cols=66 Identities=11% Similarity=0.164 Sum_probs=47.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCCe---EEEE-cCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHh
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGHS---IDVV-NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIR 926 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~~---v~~a-~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR 926 (1002)
..+|..||=++.....++..++..|+. +... .+..+.+..+....||+|++|...+. -.++.+.+.
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~~~--~~~~l~~~~ 150 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMD--LKALVDAAW 150 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCCTTT--HHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcHHH--HHHHHHHHH
Confidence 358999999999999999999998865 6554 46666554443578999999975443 333455544
No 303
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=26.11 E-value=1.6e+02 Score=29.84 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=53.0
Q ss_pred HHHHhcCCeEEEEc---CHHHHHHHHHcC--CCcEEEEcCCCCCCCH-------HHHHHHHhccccCCCchhhhhhhhcc
Q 039716 877 SMMKQLGHSIDVVN---NGVEAVHAVQCQ--NYDLILMDVCMPVMDG-------LKATRLIRSFEDTGNWDAAAEAGIEQ 944 (1002)
Q Consensus 877 ~~L~~~g~~v~~a~---~G~eAl~~~~~~--~~DlIlmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~~~~~~~ 944 (1002)
..+++.|..+...- +..++++.+... ..|.|+++-..|+-.| ++-++++|+..
T Consensus 107 ~~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~--------------- 171 (228)
T 1h1y_A 107 QSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY--------------- 171 (228)
T ss_dssp HHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC---------------
T ss_pred HHHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc---------------
Confidence 33445676655443 334666666654 7899998877776433 55666666531
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 945 AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 945 ~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
+++||++- +.-..+...++.++|+|.++.
T Consensus 172 -----------~~~pi~v~-GGI~~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 172 -----------PSLDIEVD-GGLGPSTIDVAASAGANCIVA 200 (228)
T ss_dssp -----------TTSEEEEE-SSCSTTTHHHHHHHTCCEEEE
T ss_pred -----------CCCCEEEE-CCcCHHHHHHHHHcCCCEEEE
Confidence 25776654 445557888999999999875
No 304
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=25.94 E-value=2.8e+02 Score=28.41 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=61.9
Q ss_pred EEEecCHHHHHHHHHHHHhcCC-eEEEEcCHHHHHHHHH---cCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhh
Q 039716 863 LLVEDNKINVMVAKSMMKQLGH-SIDVVNNGVEAVHAVQ---CQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAA 938 (1002)
Q Consensus 863 LiVeDn~~n~~~l~~~L~~~g~-~v~~a~~G~eAl~~~~---~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~ 938 (1002)
|+.+|.- + . +...|.+.+. -|....+..+|+..++ ....++|=+.+.-| +++++++.||+..
T Consensus 18 ~~~~~~m-~-~-~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~--~a~e~I~~l~~~~--------- 83 (232)
T 4e38_A 18 LYFQSMM-S-T-INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSD--AAVEAIRLLRQAQ--------- 83 (232)
T ss_dssp --CCCCH-H-H-HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTST--THHHHHHHHHHHC---------
T ss_pred hHHHHHH-H-H-HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCC--CHHHHHHHHHHhC---------
Confidence 4455542 2 2 3345555563 4666677777776554 56788777666554 7899999998631
Q ss_pred hhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEeCCCChHHHHHHH
Q 039716 939 EAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVSKPVTFQKLKECL 997 (1002)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~KP~~~~~L~~~l 997 (1002)
+. .+|..-.-...+..+.|.++|++-.+ =|-.-.++....
T Consensus 84 -----------------~~-~~iGaGTVlt~~~a~~Ai~AGA~fIv-sP~~~~~vi~~~ 123 (232)
T 4e38_A 84 -----------------PE-MLIGAGTILNGEQALAAKEAGATFVV-SPGFNPNTVRAC 123 (232)
T ss_dssp -----------------TT-CEEEEECCCSHHHHHHHHHHTCSEEE-CSSCCHHHHHHH
T ss_pred -----------------CC-CEEeECCcCCHHHHHHHHHcCCCEEE-eCCCCHHHHHHH
Confidence 22 24444345568899999999998555 454444443333
No 305
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=25.78 E-value=2.7e+02 Score=27.95 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=45.6
Q ss_pred cCHHHHHHHHHcCCCc-EEEEcCCCCCC---CHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 039716 890 NNGVEAVHAVQCQNYD-LILMDVCMPVM---DGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965 (1002)
Q Consensus 890 ~~G~eAl~~~~~~~~D-lIlmDi~MP~m---dG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa 965 (1002)
.+..+.++.+.....| +.+.|...... ..++.++.|++. ..+||++...
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~---------------------------~~ipvi~~g~ 85 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEA---------------------------VSIPVLVGGG 85 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHH---------------------------CSSCEEEESS
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHh---------------------------cCCCEEEECC
Confidence 3555666666666666 44444433211 235667777642 2489999888
Q ss_pred CCCHHHHHHHHHcCCCEEE
Q 039716 966 NALSESAEECFANGMDSFV 984 (1002)
Q Consensus 966 ~~~~~~~~~~~~aG~d~~l 984 (1002)
-.+.+...+++++|+|.+.
T Consensus 86 i~~~~~~~~~~~~Gad~V~ 104 (253)
T 1h5y_A 86 VRSLEDATTLFRAGADKVS 104 (253)
T ss_dssp CCSHHHHHHHHHHTCSEEE
T ss_pred CCCHHHHHHHHHcCCCEEE
Confidence 8888899999999999877
No 306
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=25.78 E-value=79 Score=32.45 Aligned_cols=83 Identities=17% Similarity=0.303 Sum_probs=53.9
Q ss_pred HHHHHHhcCCeEEEEcC---HHHHHHHHHcCCCcEEEEcCCCCCCCH-------HHHHHHHhccccCCCchhhhhhhhcc
Q 039716 875 AKSMMKQLGHSIDVVNN---GVEAVHAVQCQNYDLILMDVCMPVMDG-------LKATRLIRSFEDTGNWDAAAEAGIEQ 944 (1002)
Q Consensus 875 l~~~L~~~g~~v~~a~~---G~eAl~~~~~~~~DlIlmDi~MP~mdG-------~e~~~~IR~~~~~~~~~~~~~~~~~~ 944 (1002)
+...+++.|..+-++-+ ..+.++.+.. ..|+|++.-.-|+.+| ++-++++|+.
T Consensus 104 ~i~~i~~~G~k~gval~p~t~~e~l~~~l~-~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~---------------- 166 (228)
T 3ovp_A 104 LIKDIRENGMKVGLAIKPGTSVEYLAPWAN-QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQ---------------- 166 (228)
T ss_dssp HHHHHHHTTCEEEEEECTTSCGGGTGGGGG-GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHH----------------
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHhc-cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHh----------------
Confidence 33455777887766644 3344443332 4788887666787776 3345556642
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 945 AMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 945 ~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
...+| |.+.+....+....|.++|+|.++.
T Consensus 167 ----------~~~~~-I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 167 ----------FPSLD-IEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp ----------CTTCE-EEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred ----------cCCCC-EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 12344 5677777889999999999999875
No 307
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=25.36 E-value=2.5e+02 Score=30.20 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=54.6
Q ss_pred HHHhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCC-----CCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCC
Q 039716 878 MMKQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVCMP-----VMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951 (1002)
Q Consensus 878 ~L~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP-----~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1002)
.++..|..+. .+.+..+|..+ .....|.|+++-.-+ ....+++++.++..
T Consensus 105 ~l~~~g~~v~~~v~~~~~a~~~-~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~----------------------- 160 (332)
T 2z6i_A 105 RFHEAGIIVIPVVPSVALAKRM-EKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATA----------------------- 160 (332)
T ss_dssp HHHHTTCEEEEEESSHHHHHHH-HHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHH-----------------------
T ss_pred HHHHcCCeEEEEeCCHHHHHHH-HHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHh-----------------------
Confidence 3444576654 35666665544 445688888863211 13457888888752
Q ss_pred CCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 952 SNHFKRIPIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 952 ~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
-.+|||+-.+-.+.++..+++..|+|.+.
T Consensus 161 ----~~iPViaaGGI~~~~~~~~al~~GAdgV~ 189 (332)
T 2z6i_A 161 ----ISIPVIAAGGIADGEGAAAGFMLGAEAVQ 189 (332)
T ss_dssp ----CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred ----cCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 24899999988889999999999999875
No 308
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=24.74 E-value=3.2e+02 Score=30.28 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhc-CCeEE--EEcCHHHHHHHHHcCCCcEEEEcCCC---------C--CCCHHHHHHHHhccccCCCc
Q 039716 869 KINVMVAKSMMKQL-GHSID--VVNNGVEAVHAVQCQNYDLILMDVCM---------P--VMDGLKATRLIRSFEDTGNW 934 (1002)
Q Consensus 869 ~~n~~~l~~~L~~~-g~~v~--~a~~G~eAl~~~~~~~~DlIlmDi~M---------P--~mdG~e~~~~IR~~~~~~~~ 934 (1002)
....+.++.+-+.. +..|. .+.+.++|..+. ....|.|.+-... + +.-.++++..++..-.
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~-~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~---- 253 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLI-SVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACN---- 253 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHH-TTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHH-hcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHh----
Confidence 34445555444544 55555 366776665544 5678988882100 0 1224556666654210
Q ss_pred hhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 935 DAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
..++|||+..+-...++..+++.+|+|.+..
T Consensus 254 --------------------~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 254 --------------------NTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp --------------------TSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred --------------------hcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 1359999999999999999999999998765
No 309
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=24.73 E-value=1.6e+02 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=15.6
Q ss_pred eEEEEecCHHHHHHHHHHHHhcCCeEEE
Q 039716 861 KILLVEDNKINVMVAKSMMKQLGHSIDV 888 (1002)
Q Consensus 861 ~ILiVeDn~~n~~~l~~~L~~~g~~v~~ 888 (1002)
+|||+..+.-...-+-.++.++||.|..
T Consensus 53 kiliisndkqllkemlelisklgykvfl 80 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVFL 80 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeEE
Confidence 4666666655544444555566665543
No 310
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=23.55 E-value=1.3e+02 Score=32.30 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=47.1
Q ss_pred EEEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcC
Q 039716 886 IDVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTA 965 (1002)
Q Consensus 886 v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa 965 (1002)
...+.+-.|+.+++.. ..|+|.+|-.-| +.++.+...- ..+ ..|..|+
T Consensus 211 eVEv~tl~e~~eAl~a-GaDiImLDn~s~-----~~l~~av~~~-------------------------~~~-v~leaSG 258 (300)
T 3l0g_A 211 AIECDNISQVEESLSN-NVDMILLDNMSI-----SEIKKAVDIV-------------------------NGK-SVLEVSG 258 (300)
T ss_dssp EEEESSHHHHHHHHHT-TCSEEEEESCCH-----HHHHHHHHHH-------------------------TTS-SEEEEES
T ss_pred EEEECCHHHHHHHHHc-CCCEEEECCCCH-----HHHHHHHHhh-------------------------cCc-eEEEEEC
Confidence 4468899999998876 589999996333 2233222210 012 3778999
Q ss_pred CCCHHHHHHHHHcCCCEEE
Q 039716 966 NALSESAEECFANGMDSFV 984 (1002)
Q Consensus 966 ~~~~~~~~~~~~aG~d~~l 984 (1002)
....+...+..+.|+|.+-
T Consensus 259 GIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 259 CVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp SCCTTTHHHHHTTTCSEEE
T ss_pred CCCHHHHHHHHHcCCCEEE
Confidence 9999999999999998664
No 311
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=23.37 E-value=1.2e+02 Score=33.36 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=49.1
Q ss_pred CCCeEEEEecCHHHHHHHHHHHHhc---CCeEEEEcCHHHHHHHHHcCCCcEEEEcCCCCC
Q 039716 858 PKPKILLVEDNKINVMVAKSMMKQL---GHSIDVVNNGVEAVHAVQCQNYDLILMDVCMPV 915 (1002)
Q Consensus 858 ~~~~ILiVeDn~~n~~~l~~~L~~~---g~~v~~a~~G~eAl~~~~~~~~DlIlmDi~MP~ 915 (1002)
-+.++.|+|.++....-+..+|.+. .+.+..+.+.+.+.+.++.+.+|++|+|=.++.
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~~dilli~e~~~~ 80 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYRIDVLIAEEDFNI 80 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHTCSEEEEETTCCC
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCCCCEEEEcchhhh
Confidence 3568999999999888888888643 478899999999999999999999999977754
No 312
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=23.25 E-value=6.7e+02 Score=26.34 Aligned_cols=98 Identities=9% Similarity=0.088 Sum_probs=63.8
Q ss_pred HHHHHHhcCC-eEEEE--cCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCC
Q 039716 875 AKSMMKQLGH-SIDVV--NNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951 (1002)
Q Consensus 875 l~~~L~~~g~-~v~~a--~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1002)
++..|+. |. .+-.. .+..+.++++....+|.|++|+.=...+--++...++....
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~~GaD~v~lDlEh~~~~~~~~~~~l~a~~~--------------------- 87 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGEHAPNNVQTVLTQLQAIAP--------------------- 87 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTSCCSEEEEESSSSSCCHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHhCCCCEEEEeCCCccchHHHHHHHHHHHHh---------------------
Confidence 5566654 54 34333 45567778888889999999995544555555555554211
Q ss_pred CCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe-CCCChHHHHHHHH
Q 039716 952 SNHFKRIPIIAMTANALSESAEECFANGMDSFVS-KPVTFQKLKECLE 998 (1002)
Q Consensus 952 ~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~-KP~~~~~L~~~l~ 998 (1002)
...|+++=+...+..+...++++|++..+. |--+.++++.+++
T Consensus 88 ----~~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~ 131 (287)
T 2v5j_A 88 ----YPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVR 131 (287)
T ss_dssp ----SSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHH
T ss_pred ----cCCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH
Confidence 134566666666788999999999997554 3335777776665
No 313
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=23.23 E-value=2.1e+02 Score=28.98 Aligned_cols=67 Identities=15% Similarity=0.256 Sum_probs=48.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCC--eEE-EEcCHHHHHHHHH-----cCCCcEEEEcCCCCCCCHHHHHHHHhc
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGH--SID-VVNNGVEAVHAVQ-----CQNYDLILMDVCMPVMDGLKATRLIRS 927 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~--~v~-~a~~G~eAl~~~~-----~~~~DlIlmDi~MP~mdG~e~~~~IR~ 927 (1002)
..+|..+|-++.....++..+++.|+ .+. ...+..+.+..+. ...||+|++|...+ +-..+.+.+..
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~~~ 169 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERLMK 169 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHHHH
Confidence 35899999999999999999998887 354 4567877776553 46799999996432 23344455443
No 314
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.99 E-value=2.2e+02 Score=24.13 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHhhcCChHHHHH
Q 039716 167 TVEYWKQRALDLEKMLEASGQREQALME---KLNESVTNLEKQSSPVEELS 214 (1002)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~e~~l~~---~l~~~~~~l~~~~~~~~~~~ 214 (1002)
+-.||+.-|-.-.+.+..+.+.-..|-. .+.+.+..|+..+..+.++.
T Consensus 14 se~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 14 SSQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4469999998877777777666555543 33455555555444444433
No 315
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=22.88 E-value=2.6e+02 Score=27.82 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=53.6
Q ss_pred HHHHHHHHhc-CCeE-EEEcCHHHHHHHHHcCCCcEEEEcCC-----CC----CCCHHHHHHHHhccccCCCchhhhhhh
Q 039716 873 MVAKSMMKQL-GHSI-DVVNNGVEAVHAVQCQNYDLILMDVC-----MP----VMDGLKATRLIRSFEDTGNWDAAAEAG 941 (1002)
Q Consensus 873 ~~l~~~L~~~-g~~v-~~a~~G~eAl~~~~~~~~DlIlmDi~-----MP----~mdG~e~~~~IR~~~~~~~~~~~~~~~ 941 (1002)
.+++.+-+.. |..+ ..+.+..++..+. ....|+|..-.. .+ ...+++.++.++..
T Consensus 108 ~~i~~~~~~~~~~~v~~~~~t~~e~~~~~-~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~------------- 173 (223)
T 1y0e_A 108 ELVSYIRTHAPNVEIMADIATVEEAKNAA-RLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS------------- 173 (223)
T ss_dssp HHHHHHHHHCTTSEEEEECSSHHHHHHHH-HTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHhCCCceEEecCCCHHHHHHHH-HcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhh-------------
Confidence 3444433332 5443 3456777776644 455787754221 11 12245677777742
Q ss_pred hcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 942 IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 942 ~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
-.+|||+..+-.+.++..+++++|+|.++.
T Consensus 174 --------------~~ipvia~GGI~~~~~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 174 --------------VDAKVIAEGNVITPDMYKRVMDLGVHCSVV 203 (223)
T ss_dssp --------------CCSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred --------------CCCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 248999999888999999999999998875
No 316
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=22.84 E-value=52 Score=35.02 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=41.7
Q ss_pred CCCeEEEEecC-----HHHHHHHHHHHHhcC-CeEEEEcCHH-----HHHHHHHcCCCcEEEEcCCCCCCCH
Q 039716 858 PKPKILLVEDN-----KINVMVAKSMMKQLG-HSIDVVNNGV-----EAVHAVQCQNYDLILMDVCMPVMDG 918 (1002)
Q Consensus 858 ~~~~ILiVeDn-----~~n~~~l~~~L~~~g-~~v~~a~~G~-----eAl~~~~~~~~DlIlmDi~MP~mdG 918 (1002)
.+.+||||.-. +.....+..+|++.| ++|+++.+.. +.+.. .-..||+||++..+...+-
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~-~L~~~D~vV~~~~~~~l~~ 73 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVL-DFSPYQLVVLDYNGDSWPE 73 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCC-CCTTCSEEEECCCSSCCCH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhh-hhhcCCEEEEeCCCCcCCH
Confidence 35689999762 445578899999998 9999997641 22211 1246999999887665544
No 317
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=22.70 E-value=4.1e+02 Score=28.91 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=54.2
Q ss_pred HhcCCeEE-EEcCHHHHHHHHHcCCCcEEEEcCC---------CC-----C--CCHHHHHHHHhccccCCCchhhhhhhh
Q 039716 880 KQLGHSID-VVNNGVEAVHAVQCQNYDLILMDVC---------MP-----V--MDGLKATRLIRSFEDTGNWDAAAEAGI 942 (1002)
Q Consensus 880 ~~~g~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~---------MP-----~--mdG~e~~~~IR~~~~~~~~~~~~~~~~ 942 (1002)
+..|..|. .+.+..+|..+. ....|.|+++-. .| . .+.+++++.++..
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~-~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~-------------- 206 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVE-AAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA-------------- 206 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHH-HTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH--------------
T ss_pred HHCCCeEEEECCCHHHHHHHH-HcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh--------------
Confidence 34566543 467777776554 456899988531 11 0 2348888888752
Q ss_pred cccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 943 EQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 943 ~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
..+|||+.-+-.+.++..+++..|+|.+.
T Consensus 207 -------------~~iPViaaGGI~~~~~~~~~l~~GAd~V~ 235 (369)
T 3bw2_A 207 -------------VDIPVVAAGGIMRGGQIAAVLAAGADAAQ 235 (369)
T ss_dssp -------------CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred -------------cCceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 25899998888799999999999999876
No 318
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=22.64 E-value=2.7e+02 Score=23.76 Aligned_cols=47 Identities=23% Similarity=0.423 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhhcCChHHHH
Q 039716 167 TVEYWKQRALDLEKMLEASGQREQALM---EKLNESVTNLEKQSSPVEEL 213 (1002)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~e~~l~---~~l~~~~~~l~~~~~~~~~~ 213 (1002)
+-.||+.-|..-...+..+.+.-..|. +.+++.+..|+..+..++++
T Consensus 18 se~YWk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 18 SSQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446999999877777776665544443 33444444554444333333
No 319
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=22.15 E-value=2.5e+02 Score=29.27 Aligned_cols=86 Identities=7% Similarity=0.041 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCeEE-EEc--CHHHHHHHHHcCCCcEEEEcCCCCCCCH---------HHHHHHHhccccCCCchhhhh
Q 039716 872 VMVAKSMMKQLGHSID-VVN--NGVEAVHAVQCQNYDLILMDVCMPVMDG---------LKATRLIRSFEDTGNWDAAAE 939 (1002)
Q Consensus 872 ~~~l~~~L~~~g~~v~-~a~--~G~eAl~~~~~~~~DlIlmDi~MP~mdG---------~e~~~~IR~~~~~~~~~~~~~ 939 (1002)
...+...+++.|..+. .+. +..+-++.+.....+.|++. .+.+..| .+.++++|+.
T Consensus 136 ~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~-s~~G~tG~~~~~~~~~~~~i~~lr~~----------- 203 (268)
T 1qop_A 136 SAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLL-SRSGVTGAENRGALPLHHLIEKLKEY----------- 203 (268)
T ss_dssp CHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEE-SSSSCCCSSSCC--CCHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCCcEEEE-ecCCcCCCccCCCchHHHHHHHHHhc-----------
Confidence 3455667778887633 332 22333333332222334443 2223333 5778888862
Q ss_pred hhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 940 AGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
..+||++=.+-...+...+|+.+|+|.++.
T Consensus 204 ----------------~~~pi~vggGI~t~e~~~~~~~agAD~vVV 233 (268)
T 1qop_A 204 ----------------HAAPALQGFGISSPEQVSAAVRAGAAGAIS 233 (268)
T ss_dssp ----------------TCCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ----------------cCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 247877766666689999999999999986
No 320
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=21.78 E-value=1.2e+02 Score=34.86 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCCcEEEEcCCCCCCCH-HHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHH
Q 039716 893 VEAVHAVQCQNYDLILMDVCMPVMDG-LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971 (1002)
Q Consensus 893 ~eAl~~~~~~~~DlIlmDi~MP~mdG-~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~ 971 (1002)
.+.++.+....+|+|.+|...|...+ ++.++.||+. .+.+||++-+ -...+.
T Consensus 233 ~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~--------------------------~p~~~Vi~g~-v~t~e~ 285 (496)
T 4fxs_A 233 EERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAA--------------------------YPHLEIIGGN-VATAEG 285 (496)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHH--------------------------CTTCCEEEEE-ECSHHH
T ss_pred HHHHHHHHhccCceEEeccccccchHHHHHHHHHHHH--------------------------CCCceEEEcc-cCcHHH
Confidence 45555555668999999998775432 4677888752 2467888733 345678
Q ss_pred HHHHHHcCCCEEEe
Q 039716 972 AEECFANGMDSFVS 985 (1002)
Q Consensus 972 ~~~~~~aG~d~~l~ 985 (1002)
...+.++|+|.+..
T Consensus 286 a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 286 ARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHTCSEEEE
T ss_pred HHHHHHhCCCEEEE
Confidence 88999999998875
No 321
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.56 E-value=3.8e+02 Score=22.86 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=20.5
Q ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 039716 166 DTVEYWKQRALDLEKMLEASGQREQALME 194 (1002)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~e~~l~~ 194 (1002)
.+-.||+.-|-.....|..+.+.-..|.+
T Consensus 25 Pse~YWk~lAE~RR~AL~eaL~EN~~Lh~ 53 (83)
T 1uii_A 25 PSSQYWKEVAEKRRKALYEALKENEKLHK 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999998877777777665555543
No 322
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=21.52 E-value=3.5e+02 Score=27.43 Aligned_cols=29 Identities=24% Similarity=0.177 Sum_probs=26.1
Q ss_pred CccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 957 RIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
.+||++...-.+.++..+++++|+|..+.
T Consensus 74 ~ipvi~~ggI~~~~~~~~~~~~Gad~V~l 102 (253)
T 1thf_D 74 DIPFTVGGGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp CSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 58999998888899999999999998875
No 323
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.31 E-value=4e+02 Score=22.97 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHhccCcEE
Q 039716 166 DTVEYWKQRALDLEKMLE----ASGQREQALMEKLNESVTNLEKQSSPVEELSQILKRADNFLHFVLQNAPVVM 235 (1002)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~----~~~~~e~~l~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~il~~~p~~i 235 (1002)
+.-.||.-|...=. ... ...+++..+ ...+..|+..+..++.--+.|..--.+|+.+|-..|..+
T Consensus 12 ~d~~Y~~rR~rNN~-AarrSR~krk~r~~e~----~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~ 80 (87)
T 1hjb_A 12 HSDEYKIRRERNNI-AVRKSRDKAKMRNLET----QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPL 80 (87)
T ss_dssp TSHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccHHHHHHHHHhHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHH
Confidence 44568887775522 111 122233333 333344444444444444455555566777777777654
No 324
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=21.04 E-value=2.8e+02 Score=28.28 Aligned_cols=28 Identities=32% Similarity=0.401 Sum_probs=25.3
Q ss_pred CccEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 957 RIPIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
.+|||+--+-.+.++..+++++|+|..+
T Consensus 79 ~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ 106 (247)
T 3tdn_A 79 TLPIIASGGAGKMEHFLEAFLRGADKVS 106 (247)
T ss_dssp CSCEEEESCCCSHHHHHHHHHTTCSEEC
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCeee
Confidence 5899999888899999999999999876
No 325
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=20.96 E-value=1.4e+02 Score=32.89 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCcEEEEcCCCCCCCH-HHHHHHHhccccCCCchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHH
Q 039716 893 VEAVHAVQCQNYDLILMDVCMPVMDG-LKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSES 971 (1002)
Q Consensus 893 ~eAl~~~~~~~~DlIlmDi~MP~mdG-~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~ 971 (1002)
.+.++.+....+|+|.+|.......+ ++.++.||+ ..+.+|||+ -.-...++
T Consensus 102 ~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~--------------------------~~~~~~Vi~-G~V~T~e~ 154 (361)
T 3r2g_A 102 LQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQ--------------------------LLGSRCIMA-GNVATYAG 154 (361)
T ss_dssp HHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHH--------------------------HHTTCEEEE-EEECSHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHH--------------------------hcCCCeEEE-cCcCCHHH
Q ss_pred HHHHHHcCCCEEEe
Q 039716 972 AEECFANGMDSFVS 985 (1002)
Q Consensus 972 ~~~~~~aG~d~~l~ 985 (1002)
...+.++|+|....
T Consensus 155 A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 155 ADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHTTCSEEEE
T ss_pred HHHHHHcCCCEEEE
No 326
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=20.73 E-value=4.3e+02 Score=30.77 Aligned_cols=43 Identities=30% Similarity=0.472 Sum_probs=36.8
Q ss_pred CccEEEEcCCCCHHHHHHHHH-cCCCEEEe------CCCChHHHHHHHHh
Q 039716 957 RIPIIAMTANALSESAEECFA-NGMDSFVS------KPVTFQKLKECLEQ 999 (1002)
Q Consensus 957 ~ipIIalTa~~~~~~~~~~~~-aG~d~~l~------KP~~~~~L~~~l~~ 999 (1002)
.+|||+--+-.+.++..++++ .|+++.+. .|+++.+++..+.+
T Consensus 496 ~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l~~ 545 (555)
T 1jvn_A 496 KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLE 545 (555)
T ss_dssp SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHH
T ss_pred CccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 589999888889999999998 89999764 58999999887754
No 327
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=20.68 E-value=3.6e+02 Score=27.07 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=53.8
Q ss_pred HHHHHHHHHhc-CCeEE-EEcCHHHHHHHHHcCCCcEE---EEcCCCCC-----CCHHHHHHHHhccccCCCchhhhhhh
Q 039716 872 VMVAKSMMKQL-GHSID-VVNNGVEAVHAVQCQNYDLI---LMDVCMPV-----MDGLKATRLIRSFEDTGNWDAAAEAG 941 (1002)
Q Consensus 872 ~~~l~~~L~~~-g~~v~-~a~~G~eAl~~~~~~~~DlI---lmDi~MP~-----mdG~e~~~~IR~~~~~~~~~~~~~~~ 941 (1002)
..+++.+-+.. +..+. .+.+..+|.... ....|+| ++.+. |. ..+++.++.++.
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~-~~Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~-------------- 184 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAH-QAGIDFVGTTLSGYT-PYSRQEAGPDVALIEALCK-------------- 184 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHH-HTTCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHH--------------
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHH-HcCCCEEeeeccccC-CCCcCCCCCCHHHHHHHHh--------------
Confidence 34444443333 44433 346677765554 4567887 44332 21 123677777774
Q ss_pred hcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 942 IEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 942 ~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
. .+||++..+-.+.++..+++++|+|.++.
T Consensus 185 -------------~-~ipvia~GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 185 -------------A-GIAVIAEGKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp -------------T-TCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred -------------C-CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 1 48999988888899999999999999864
No 328
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=20.63 E-value=7.2e+02 Score=25.69 Aligned_cols=99 Identities=9% Similarity=0.081 Sum_probs=63.0
Q ss_pred HHHHHHhcCC-eE--EEEcCHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHHhccccCCCchhhhhhhhcccCCCCCC
Q 039716 875 AKSMMKQLGH-SI--DVVNNGVEAVHAVQCQNYDLILMDVCMPVMDGLKATRLIRSFEDTGNWDAAAEAGIEQAMPSSGS 951 (1002)
Q Consensus 875 l~~~L~~~g~-~v--~~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG~e~~~~IR~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1002)
++..|.. |. .+ ...-...+.++++....+|.|++|+.=...+--++...++....
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~~GaD~v~lDlE~~~~~~~~~~~~~~a~~~--------------------- 66 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAP--------------------- 66 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTTCCSEEEEETTTSCCCHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHHHHh---------------------
Confidence 5555654 54 22 23345566778888889999999996554555556566654321
Q ss_pred CCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEEe-CCCChHHHHHHHHh
Q 039716 952 SNHFKRIPIIAMTANALSESAEECFANGMDSFVS-KPVTFQKLKECLEQ 999 (1002)
Q Consensus 952 ~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l~-KP~~~~~L~~~l~~ 999 (1002)
...|+++=+...+..+...++++|++..+. |--+.++++..++.
T Consensus 67 ----~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 67 ----YASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp ----SSSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred ----CCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 123455444456688889999999997544 33467777766543
No 329
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=20.63 E-value=2.4e+02 Score=28.85 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=49.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcCC--eEEE-EcCHHHHHHHHH-----cCCCcEEEEcCCCCCCCHHHHHHHHhc
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLGH--SIDV-VNNGVEAVHAVQ-----CQNYDLILMDVCMPVMDGLKATRLIRS 927 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g~--~v~~-a~~G~eAl~~~~-----~~~~DlIlmDi~MP~mdG~e~~~~IR~ 927 (1002)
..+|..+|-++.....++..++..|+ .|.. ..+..+.+..+. ...||+|++|...+ +-..+.+.+..
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~ 178 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKRLID 178 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHHHHH
Confidence 35899999999999999999998886 3544 567777776553 46899999997533 33455555544
No 330
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=20.36 E-value=1.4e+02 Score=32.84 Aligned_cols=66 Identities=15% Similarity=0.309 Sum_probs=47.1
Q ss_pred CeEEEEecCHHHHHHHHHHHHhcC---C------eEE-EEcCHHHHHHHH--HcCCCcEEEEcCCC-CC------CCHHH
Q 039716 860 PKILLVEDNKINVMVAKSMMKQLG---H------SID-VVNNGVEAVHAV--QCQNYDLILMDVCM-PV------MDGLK 920 (1002)
Q Consensus 860 ~~ILiVeDn~~n~~~l~~~L~~~g---~------~v~-~a~~G~eAl~~~--~~~~~DlIlmDi~M-P~------mdG~e 920 (1002)
.+|.+||=++....+.+..+...+ + .+. ...|+.+.++.+ ....||+|++|.-- |. .-..+
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t~e 291 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWE 291 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhHHH
Confidence 479999999999999998876432 1 243 468999988765 45789999999865 42 23456
Q ss_pred HHHHH
Q 039716 921 ATRLI 925 (1002)
Q Consensus 921 ~~~~I 925 (1002)
+.+.+
T Consensus 292 Fy~~~ 296 (364)
T 2qfm_A 292 FLRLI 296 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 331
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=20.25 E-value=4.5e+02 Score=30.10 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhc-CCeEE--EEcCHHHHHHHHHcCCCcEEEEcC--------------CCCCCCHHHHHHHHhccccCC
Q 039716 870 INVMVAKSMMKQL-GHSID--VVNNGVEAVHAVQCQNYDLILMDV--------------CMPVMDGLKATRLIRSFEDTG 932 (1002)
Q Consensus 870 ~n~~~l~~~L~~~-g~~v~--~a~~G~eAl~~~~~~~~DlIlmDi--------------~MP~mdG~e~~~~IR~~~~~~ 932 (1002)
...+.++.+-+.. +..|. .+.+..+|..+... ..|.|.+-. .+|....+..++.++..
T Consensus 282 ~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a-Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~---- 356 (514)
T 1jcn_A 282 YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA-GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARR---- 356 (514)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH-TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGG----
T ss_pred hHHHHHHHHHHhCCCCceEecccchHHHHHHHHHc-CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhh----
Confidence 3445666665555 55554 36777777665544 477776632 12222234555555531
Q ss_pred CchhhhhhhhcccCCCCCCCCCCCCccEEEEcCCCCHHHHHHHHHcCCCEEE
Q 039716 933 NWDAAAEAGIEQAMPSSGSSNHFKRIPIIAMTANALSESAEECFANGMDSFV 984 (1002)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~ipIIalTa~~~~~~~~~~~~aG~d~~l 984 (1002)
..+|||+--+-....+..+++.+|+|...
T Consensus 357 -----------------------~~ipVia~GGI~~~~di~kala~GAd~V~ 385 (514)
T 1jcn_A 357 -----------------------FGVPIIADGGIQTVGHVVKALALGASTVM 385 (514)
T ss_dssp -----------------------GTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred -----------------------CCCCEEEECCCCCHHHHHHHHHcCCCeee
Confidence 24899999999999999999999999865
No 332
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=20.21 E-value=4.9e+02 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=20.0
Q ss_pred CCccEEEEcCCCCHHHHHHHHHcCCCEEEe
Q 039716 956 KRIPIIAMTANALSESAEECFANGMDSFVS 985 (1002)
Q Consensus 956 ~~ipIIalTa~~~~~~~~~~~~aG~d~~l~ 985 (1002)
+.++||+...+ .+......++|+|..+.
T Consensus 97 ~~~~iiar~~~--~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 97 PDIEIIARAHY--DDEVAYITERGANQVVM 124 (140)
T ss_dssp SSSEEEEEESS--HHHHHHHHHTTCSEEEE
T ss_pred CCCeEEEEECC--HHHHHHHHHCCCCEEEC
Confidence 45678877653 56667778899997764
No 333
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=20.11 E-value=2.2e+02 Score=29.76 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=47.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHhcC-----CeEE-EEcCHHHHHHHHHcCCCcEEEEcCCCCCCCH-----HHHHHHHhc
Q 039716 859 KPKILLVEDNKINVMVAKSMMKQLG-----HSID-VVNNGVEAVHAVQCQNYDLILMDVCMPVMDG-----LKATRLIRS 927 (1002)
Q Consensus 859 ~~~ILiVeDn~~n~~~l~~~L~~~g-----~~v~-~a~~G~eAl~~~~~~~~DlIlmDi~MP~mdG-----~e~~~~IR~ 927 (1002)
..+|..||=++......+..+...+ -.+. ...|+.+.+... ...||+|++|...|.... -++.+.++.
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~ 180 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYN 180 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-CCCceEEEEcCCCCCCcchhhhHHHHHHHHHH
Confidence 3489999999999999988886532 2343 457887766543 568999999987664222 366666654
Done!