BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039717
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 122 bits (306), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 73/95 (76%)
Query: 36 STFTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKS 95
+ + VG + GWT+N +SW GK+F+AGD L+FNY+ S+HNV VV+ + +C +K
Sbjct: 1 AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKV 60
Query: 96 FSSGKDQIKLSKGRNYFICSIPGHCEAGLKLAVDA 130
++SG+DQIKL KG++YFIC+ PGHC++G+K+AV+A
Sbjct: 61 YTSGRDQIKLPKGQSYFICNFPGHCQSGMKIAVNA 95
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 45 GWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIK 104
GW++N+ A GK F+AGD L+F Y HNV V+G Y SC A ++++SSG+D+IK
Sbjct: 6 GWSFNVNG-ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIK 64
Query: 105 LSKGRNYFICSIPGHCEAGLKLAVDA 130
L++G+NYFICS PGHC G+K+A++A
Sbjct: 65 LTRGQNYFICSFPGHCGGGMKIAINA 90
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Query: 40 VGDTSGWT----YNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKS 95
VGD++GWT Y+ WA+ +F GD+L+FNY+ HNV VD ++SC +S + S
Sbjct: 7 VGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAAS 66
Query: 96 FSSGKDQIKLSK-GRNYFICSIPGHCEAGLKLAV 128
++SG D I L + G YF+C IPGHC+ G K+ +
Sbjct: 67 YTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEI 100
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 52 SWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKL-SKGRN 110
+WA GK F+ GD L F++ A +H+VAVV + + +C+ ++ +I L + G
Sbjct: 23 TWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQ 82
Query: 111 YFICSIPGHCEAGLKLAVDA 130
Y+IC++ HC G KL+++
Sbjct: 83 YYICTVGDHCRVGQKLSINV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 24/107 (22%)
Query: 40 VGDTSGWTY----NIQS-WANGKQFKAGDTLIFNYDASIHNVAVVD-GNNYQSC------ 87
VGD +GW+ N S WA GK F+ GD+L FN+ A+ HNV ++ ++ +C
Sbjct: 8 VGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSD 67
Query: 88 ----RASPTSKSFSSGKDQIKLSKGRNYFICSIPGHCEAGLKLAVDA 130
R SP + D++ G +YF+C++ HC G KL+++
Sbjct: 68 NDVERTSPVIERL----DEL----GMHYFVCTVGTHCSNGQKLSINV 106
>pdb|1GY2|A Chain A, Crystal Structure Of Met148leu Rusticyanin
pdb|1GY2|B Chain B, Crystal Structure Of Met148leu Rusticyanin
Length = 155
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 108 GRNYFICSIPGHCEAGL 124
G Y++C IPGH GL
Sbjct: 132 GTYYYVCQIPGHAATGL 148
>pdb|3ZSS|A Chain A, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|B Chain B, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|C Chain C, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|D Chain D, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZST|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZST|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZT5|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT6|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT7|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
Length = 695
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 36 STFTVGDTSGWTYNIQSWAN 55
+T T G+T W+Y +++W +
Sbjct: 110 ATVTAGETGTWSYTVEAWGD 129
>pdb|1A8Z|A Chain A, Structure Determination Of A 16.8kda Copper Protein
Rusticyanin At 2.1a Resolution Using Anomalous
Scattering Data With Direct Methods
Length = 153
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 108 GRNYFICSIPGHCEAGL 124
G Y++C IPGH G+
Sbjct: 130 GTYYYVCQIPGHAATGM 146
>pdb|1GY1|A Chain A, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
pdb|1GY1|B Chain B, Crystal Structures Of Ser86asp And Met148leu Rusticyanin
Length = 155
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 108 GRNYFICSIPGHCEAGL 124
G Y++C IPGH G+
Sbjct: 132 GTYYYVCQIPGHAATGM 148
>pdb|1CUR|A Chain A, Reduced Rusticyanin, Nmr
Length = 155
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 108 GRNYFICSIPGHCEAGL 124
G Y++C IPGH G+
Sbjct: 132 GTYYYVCQIPGHAATGM 148
>pdb|2CAK|A Chain A, 1.27angstrom Structure Of Rusticyanin From Thiobacillus
Ferrooxidans
Length = 154
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 108 GRNYFICSIPGHCEAGL 124
G Y++C IPGH G+
Sbjct: 131 GTYYYVCQIPGHAATGM 147
>pdb|1RCY|A Chain A, Rusticyanin (Rc) From Thiobacillus Ferrooxidans
Length = 151
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 108 GRNYFICSIPGHCEAGL 124
G Y++C IPGH G+
Sbjct: 128 GTYYYVCQIPGHAATGM 144
>pdb|1A3Z|A Chain A, Reduced Rusticyanin At 1.9 Angstroms
Length = 155
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 108 GRNYFICSIPGHCEAGL 124
G Y++C IPGH G+
Sbjct: 132 GTYYYVCQIPGHAATGM 148
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 52 SWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSF----SSGKDQIKLSK 107
SW + F GD I + +IH + N Y+ +A+ SK SG+ ++ +S+
Sbjct: 206 SW---ESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSE 262
>pdb|3LQM|A Chain A, Structure Of The Il-10r2 Common Chain
pdb|3LQM|B Chain B, Structure Of The Il-10r2 Common Chain
Length = 201
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 17 VAATLIVLLFLRFHSTEATSTFTVGDT-SGWTYNIQSWANGKQFKAGDTLIFNYDA 71
V A + + FL T+T+ + + WTYN+Q W G K T ++++
Sbjct: 103 VLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEV 158
>pdb|3KK7|A Chain A, Crystal Structure Of Putative Cell Invasion Protein With
MacPERFORIN Domain (Np_812351.1) From Bacteriodes
Thetaiotaomicron Vpi-5482 At 2.46 A Resolution
pdb|3KK7|B Chain B, Crystal Structure Of Putative Cell Invasion Protein With
MacPERFORIN Domain (Np_812351.1) From Bacteriodes
Thetaiotaomicron Vpi-5482 At 2.46 A Resolution
Length = 541
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 24 LLFLRFHSTEATSTFTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDAS 72
L + F E TFT SG++ N+ + G+Q +T + N D S
Sbjct: 106 LSYSDFDRLEKNKTFTKTVKSGFSLNLGPFKFGRQKTIKETFVHNTDDS 154
>pdb|1E30|A Chain A, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
pdb|1E30|B Chain B, Crystal Structure Of The Met148gln Mutant Of Rusticyanin
At 1.5 Angstrom Resolution
Length = 155
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 108 GRNYFICSIPGHCEAG 123
G Y++C IPGH G
Sbjct: 132 GTYYYVCQIPGHAATG 147
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 66 IFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSKGRNYFICSIPGHCEAGLK 125
+ N + + H+V V + Y + A K+ SS + G + CSI GH +AG++
Sbjct: 69 LVNGEGAQHDVVV---DQYAARSAIVNGKNASSTFSFVASKVGEFNYYCSIAGHRQAGME 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.128 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,764,381
Number of Sequences: 62578
Number of extensions: 141317
Number of successful extensions: 331
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 24
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)