Query 039717
Match_columns 131
No_of_seqs 135 out of 848
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 12:32:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 6.7E-42 1.5E-46 257.9 11.2 103 28-131 13-118 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 6E-33 1.3E-37 188.7 2.2 76 49-124 9-85 (85)
3 PRK02710 plastocyanin; Provisi 98.6 1.2E-06 2.7E-11 62.3 10.8 92 30-131 23-119 (119)
4 PF00127 Copper-bind: Copper b 98.4 7.7E-07 1.7E-11 61.2 5.3 75 54-130 16-98 (99)
5 TIGR02656 cyanin_plasto plasto 98.2 1.2E-05 2.5E-10 55.4 8.9 88 37-131 2-99 (99)
6 TIGR03102 halo_cynanin halocya 98.0 9.8E-05 2.1E-09 52.8 9.5 86 34-130 22-114 (115)
7 COG3794 PetE Plastocyanin [Ene 97.9 6.4E-05 1.4E-09 54.8 7.7 69 54-130 53-126 (128)
8 TIGR02375 pseudoazurin pseudoa 97.8 0.00014 3E-09 52.0 7.8 72 54-130 14-86 (116)
9 PF06525 SoxE: Sulfocyanin (So 97.1 0.0028 6.1E-08 49.3 7.4 72 60-131 91-186 (196)
10 TIGR02657 amicyanin amicyanin. 97.0 0.0058 1.3E-07 40.6 7.4 71 54-131 10-83 (83)
11 TIGR03095 rusti_cyanin rusticy 96.5 0.017 3.6E-07 42.8 7.5 73 56-131 53-148 (148)
12 KOG3858 Ephrin, ligand for Eph 96.1 0.02 4.3E-07 45.7 6.6 30 60-89 48-86 (233)
13 TIGR03094 sulfo_cyanin sulfocy 95.9 0.053 1.1E-06 42.0 7.6 25 106-130 160-184 (195)
14 PF13473 Cupredoxin_1: Cupredo 94.7 0.031 6.6E-07 38.3 2.7 64 54-130 34-104 (104)
15 PF00812 Ephrin: Ephrin; Inte 93.7 0.075 1.6E-06 39.5 3.2 33 57-89 24-67 (145)
16 COG4454 Uncharacterized copper 92.6 0.19 4.2E-06 37.9 3.9 77 54-131 62-157 (158)
17 TIGR03096 nitroso_cyanin nitro 90.7 0.36 7.8E-06 35.5 3.6 62 48-120 54-122 (135)
18 PF02839 CBM_5_12: Carbohydrat 75.4 1.7 3.8E-05 24.7 1.2 18 50-67 1-18 (41)
19 PF07172 GRP: Glycine rich pro 74.8 1.9 4E-05 29.8 1.4 16 21-36 11-26 (95)
20 cd06555 ASCH_PF0470_like ASC-1 74.4 3.3 7.2E-05 29.3 2.7 31 56-86 29-61 (109)
21 PF02362 B3: B3 DNA binding do 74.2 2 4.2E-05 28.5 1.4 20 55-74 70-89 (100)
22 TIGR02228 sigpep_I_arch signal 74.0 13 0.00028 27.7 5.9 26 56-81 58-87 (158)
23 PF12961 DUF3850: Domain of Un 70.4 3.8 8.3E-05 27.1 2.1 18 55-72 25-43 (72)
24 PLN02604 oxidoreductase 70.3 37 0.0008 30.2 8.8 83 46-130 46-142 (566)
25 PF10377 ATG11: Autophagy-rela 69.6 6.9 0.00015 28.3 3.5 18 57-74 41-58 (129)
26 TIGR02866 CoxB cytochrome c ox 69.2 16 0.00035 27.9 5.7 82 37-130 93-190 (201)
27 PLN02354 copper ion binding / 68.4 58 0.0013 29.0 9.7 72 52-130 54-144 (552)
28 TIGR02376 Cu_nitrite_red nitri 66.5 17 0.00036 29.9 5.5 72 56-130 60-144 (311)
29 PRK10378 inactive ferrous ion 64.2 37 0.00079 29.0 7.3 16 101-116 90-105 (375)
30 PF14326 DUF4384: Domain of un 63.4 32 0.00069 22.4 5.5 16 58-73 2-17 (83)
31 TIGR02695 azurin azurin. Azuri 61.0 7.6 0.00017 28.3 2.3 22 107-129 102-124 (125)
32 PF11604 CusF_Ec: Copper bindi 59.6 6.9 0.00015 25.2 1.7 29 44-72 23-56 (70)
33 COG3241 Azurin [Energy product 58.8 4.9 0.00011 29.6 1.0 20 101-120 115-140 (151)
34 PRK02888 nitrous-oxide reducta 57.8 39 0.00085 30.9 6.6 65 55-130 555-632 (635)
35 PF00116 COX2: Cytochrome C ox 53.7 21 0.00046 25.2 3.6 66 54-130 45-119 (120)
36 PF05382 Amidase_5: Bacterioph 50.0 46 0.001 24.6 5.0 35 57-91 74-113 (145)
37 TIGR01480 copper_res_A copper- 49.3 69 0.0015 28.8 6.8 83 46-130 488-586 (587)
38 PTZ00459 mucin-associated surf 49.3 8.7 0.00019 31.5 1.1 10 1-10 1-10 (291)
39 KOG3416 Predicted nucleic acid 48.2 17 0.00037 26.7 2.4 31 37-68 40-71 (134)
40 PF06462 Hyd_WA: Propeller; I 48.1 34 0.00075 18.6 3.1 23 103-125 4-27 (32)
41 COG1622 CyoA Heme/copper-type 46.0 87 0.0019 25.1 6.3 82 38-130 116-210 (247)
42 cd02859 AMPKbeta_GBD_like AMP- 44.1 86 0.0019 20.2 5.6 44 64-110 3-48 (79)
43 PRK06461 single-stranded DNA-b 42.3 46 0.00099 23.7 3.9 31 37-68 43-74 (129)
44 PF11008 DUF2846: Protein of u 42.3 97 0.0021 21.3 5.5 58 55-113 41-99 (117)
45 cd04491 SoSSB_OBF SoSSB_OBF: A 41.5 27 0.00059 22.3 2.4 31 37-68 26-58 (82)
46 PF00686 CBM_20: Starch bindin 40.3 34 0.00074 22.6 2.8 35 36-70 17-67 (96)
47 smart00495 ChtBD3 Chitin-bindi 39.0 22 0.00049 20.0 1.5 18 50-67 1-18 (41)
48 COG3627 PhnJ Uncharacterized e 37.1 20 0.00043 28.8 1.4 23 101-123 257-280 (291)
49 PRK09723 putative fimbrial-lik 34.8 3.1E+02 0.0067 23.9 9.7 24 22-45 14-37 (421)
50 PF09792 But2: Ubiquitin 3 bin 34.7 54 0.0012 24.0 3.3 27 102-130 100-126 (143)
51 COG5569 Uncharacterized conser 34.0 35 0.00075 24.1 2.0 30 50-79 75-106 (108)
52 KOG3342 Signal peptidase I [In 33.7 16 0.00035 27.8 0.4 23 57-79 76-102 (180)
53 PF14478 DUF4430: Domain of un 32.7 17 0.00037 22.9 0.3 25 44-68 39-68 (68)
54 COG4043 Preprotein translocase 32.0 20 0.00044 25.4 0.6 16 54-69 29-44 (111)
55 KOG2315 Predicted translation 31.0 85 0.0018 28.3 4.4 62 53-114 209-277 (566)
56 PF02933 CDC48_2: Cell divisio 30.8 40 0.00087 20.8 1.8 16 55-70 15-30 (64)
57 PRK09838 periplasmic copper-bi 30.3 57 0.0012 23.1 2.7 22 50-71 80-101 (115)
58 PF05868 Rotavirus_VP7: Rotavi 30.3 37 0.00079 27.4 1.9 24 66-89 60-84 (249)
59 PRK11546 zraP zinc resistance 29.9 39 0.00085 25.1 1.9 26 21-47 12-37 (143)
60 PF09953 DUF2187: Uncharacteri 29.7 64 0.0014 20.4 2.5 12 57-68 2-13 (57)
61 KOG1546 Metacaspase involved i 28.6 35 0.00075 29.0 1.6 30 59-90 135-169 (362)
62 COG5661 Predicted secreted Zn- 28.6 73 0.0016 25.0 3.2 29 21-49 12-48 (210)
63 PRK07217 replication factor A; 28.0 53 0.0012 27.4 2.5 42 38-80 106-151 (311)
64 COG4446 Uncharacterized protei 27.7 52 0.0011 24.2 2.1 25 55-80 88-112 (141)
65 PRK13838 conjugal transfer pil 27.6 1.2E+02 0.0026 22.9 4.2 16 55-70 47-62 (176)
66 cd05829 Sortase_E Sortase E (S 27.4 1.1E+02 0.0023 22.1 3.8 23 57-79 71-93 (144)
67 TIGR03388 ascorbase L-ascorbat 27.1 1.3E+02 0.0028 26.5 4.9 74 55-130 32-119 (541)
68 COG1430 Uncharacterized conser 26.9 41 0.00088 24.4 1.5 21 51-71 103-123 (126)
69 COG1188 Ribosome-associated he 26.7 76 0.0016 22.2 2.8 21 54-74 44-64 (100)
70 PF04014 Antitoxin-MazE: Antid 26.5 23 0.0005 20.6 0.1 33 39-72 2-34 (47)
71 cd05810 CBM20_alpha_MTH Glucan 26.1 54 0.0012 22.1 1.9 35 36-70 17-63 (97)
72 PF11766 Candida_ALS_N: Cell-w 25.7 24 0.00052 28.5 0.1 37 55-91 5-48 (249)
73 PRK14699 replication factor A; 25.4 56 0.0012 28.7 2.3 30 38-68 98-133 (484)
74 PF12791 RsgI_N: Anti-sigma fa 25.2 1.6E+02 0.0034 17.5 4.0 30 99-129 5-35 (56)
75 TIGR02594 conserved hypothetic 25.0 42 0.00092 24.1 1.3 17 58-74 73-89 (129)
76 cd05808 CBM20_alpha_amylase Al 24.9 74 0.0016 20.7 2.4 35 36-70 16-62 (95)
77 PRK07218 replication factor A; 24.7 71 0.0015 27.7 2.8 36 31-68 90-125 (423)
78 PF14801 GCD14_N: tRNA methylt 24.7 78 0.0017 19.8 2.2 24 56-79 3-27 (54)
79 PF07076 DUF1344: Protein of u 24.7 1.6E+02 0.0035 18.8 3.8 35 95-129 11-47 (61)
80 PRK06386 replication factor A; 24.7 62 0.0013 27.4 2.4 32 37-69 40-71 (358)
81 PF01345 DUF11: Domain of unkn 24.4 59 0.0013 20.4 1.8 22 49-70 27-48 (76)
82 COG2372 CopC Uncharacterized p 23.0 56 0.0012 23.8 1.6 21 22-42 14-34 (127)
83 PRK02654 putative inner membra 22.9 74 0.0016 27.2 2.5 54 53-107 167-220 (375)
84 TIGR01451 B_ant_repeat conserv 22.4 65 0.0014 19.3 1.6 16 54-69 3-18 (53)
85 PF07154 DUF1392: Protein of u 22.3 89 0.0019 23.4 2.5 17 54-70 83-99 (150)
86 PF07732 Cu-oxidase_3: Multico 22.2 40 0.00087 23.5 0.7 74 56-130 27-113 (117)
87 PF03712 Cu2_monoox_C: Copper 22.0 48 0.001 24.3 1.1 29 43-71 70-103 (156)
88 PF04225 OapA: Opacity-associa 21.5 64 0.0014 21.4 1.5 22 57-79 41-62 (85)
89 TIGR00370 conserved hypothetic 21.0 69 0.0015 24.8 1.8 33 36-68 162-202 (202)
90 PRK11507 ribosome-associated p 21.0 56 0.0012 21.4 1.1 14 55-68 49-62 (70)
91 MTH00047 COX2 cytochrome c oxi 21.0 1.1E+02 0.0024 23.5 3.0 25 104-130 161-189 (194)
92 PF12071 DUF3551: Protein of u 20.5 77 0.0017 21.2 1.8 13 26-38 18-30 (82)
93 PLN02311 chalcone isomerase 20.3 1.3E+02 0.0029 24.5 3.4 26 56-81 199-224 (271)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=6.7e-42 Score=257.86 Aligned_cols=103 Identities=34% Similarity=0.657 Sum_probs=96.8
Q ss_pred HhcccccceEEEecCCCCcc--cccccccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCccccCCCcEEEc
Q 039717 28 RFHSTEATSTFTVGDTSGWT--YNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKL 105 (131)
Q Consensus 28 ~~~~~a~a~~~~VG~~~gW~--~~y~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L 105 (131)
.+...+.|++|+|||+.||+ .+|+.|+++++|++||+|+|+|+++.|||+||++++|++|+.++|+..+++|++.|+|
T Consensus 13 ~~~~~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d~v~L 92 (167)
T PLN03148 13 FSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKDFIPL 92 (167)
T ss_pred HhhhhccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCcEEEe
Confidence 34567789999999999997 5899999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CceEEEcCCCCCCcCCCEEEEEeC
Q 039717 106 SK-GRNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 106 ~~-G~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
++ |++||||+ ++||++||||.|+|.
T Consensus 93 ~~~G~~YFIcg-~ghC~~GmKl~I~V~ 118 (167)
T PLN03148 93 NKAKRYYFICG-NGQCFNGMKVTILVH 118 (167)
T ss_pred cCCccEEEEcC-CCccccCCEEEEEEc
Confidence 87 99999999 699999999999984
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=6e-33 Score=188.69 Aligned_cols=76 Identities=47% Similarity=1.026 Sum_probs=63.5
Q ss_pred ccccccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCccccCCCcEEEcCC-CceEEEcCCCCCCcCCC
Q 039717 49 NIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSK-GRNYFICSIPGHCEAGL 124 (131)
Q Consensus 49 ~y~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~-G~~yFic~~~~HC~~Gm 124 (131)
+|+.|+++++|++||+|+|+|+++.|+|+||++++|++|+.++|+..+++|++.|+|++ |++||||++++||+.||
T Consensus 9 ~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~HC~~Gq 85 (85)
T PF02298_consen 9 NYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGHCQKGQ 85 (85)
T ss_dssp HHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTTTTTT-
T ss_pred chhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCcccccC
Confidence 68999999999999999999999999999999999999999999999999999999987 99999999999999998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.57 E-value=1.2e-06 Score=62.33 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=57.6
Q ss_pred cccccceE--EEecCCCCcccccccccCCCeeeeCCEEEEEec-CCCceEEEEcCCCCCCCCCCCCCccccCCC-cEEEc
Q 039717 30 HSTEATST--FTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYD-ASIHNVAVVDGNNYQSCRASPTSKSFSSGK-DQIKL 105 (131)
Q Consensus 30 ~~~a~a~~--~~VG~~~gW~~~y~~Wa~~~~f~vGD~LvF~y~-~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~L 105 (131)
+..+.+++ ..+|.+.|+- .-.++..++++||++.|.-. ...||+.--. . +....++ .....|. .++++
T Consensus 23 ~~~a~a~~~~V~~~~~~~~~---~F~P~~i~v~~Gd~V~~~N~~~~~H~v~~~~-~--~~~~~~~--~~~~pg~t~~~tF 94 (119)
T PRK02710 23 VSSASAETVEVKMGSDAGML---AFEPSTLTIKAGDTVKWVNNKLAPHNAVFDG-A--KELSHKD--LAFAPGESWEETF 94 (119)
T ss_pred ccccccceEEEEEccCCCee---EEeCCEEEEcCCCEEEEEECCCCCceEEecC-C--ccccccc--cccCCCCEEEEEe
Confidence 33445544 4466655543 12267899999999999763 4689986311 1 1110111 1123333 36777
Q ss_pred CC-CceEEEcCCCCCCcCCCEEEEEeC
Q 039717 106 SK-GRNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 106 ~~-G~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
++ |.+-|+|. +|=+.|||-.|+|.
T Consensus 95 ~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 95 SEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred cCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 65 99999998 79889999999884
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.37 E-value=7.7e-07 Score=61.17 Aligned_cols=75 Identities=29% Similarity=0.465 Sum_probs=51.6
Q ss_pred cCCCeeeeCCEEEEEe-cCCCceEEEEcCC--CCCCCCCCCC---CccccCCCc-EEEcCC-CceEEEcCCCCCCcCCCE
Q 039717 54 ANGKQFKAGDTLIFNY-DASIHNVAVVDGN--NYQSCRASPT---SKSFSSGKD-QIKLSK-GRNYFICSIPGHCEAGLK 125 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y-~~~~H~V~~V~~~--~y~~C~~~~~---~~~~~~G~~-~v~L~~-G~~yFic~~~~HC~~GmK 125 (131)
++..++++||++.|.. +...|++...+.. .-.......+ ......|.+ .+++++ |.+.|+|. | |...||+
T Consensus 16 P~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~ 93 (99)
T PF00127_consen 16 PSEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMV 93 (99)
T ss_dssp SSEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSE
T ss_pred CCEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCE
Confidence 4778999999999999 5779999987521 0111111111 112333443 566654 99999999 8 9999999
Q ss_pred EEEEe
Q 039717 126 LAVDA 130 (131)
Q Consensus 126 l~I~V 130 (131)
-.|.|
T Consensus 94 G~i~V 98 (99)
T PF00127_consen 94 GTIIV 98 (99)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99987
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.25 E-value=1.2e-05 Score=55.40 Aligned_cols=88 Identities=23% Similarity=0.331 Sum_probs=54.9
Q ss_pred EEEecCCCC-cccccccccCCCeeeeCCEEEEEec-CCCceEEEEcCCCCCC------CCCCCCCccccCCC-cEEEcCC
Q 039717 37 TFTVGDTSG-WTYNIQSWANGKQFKAGDTLIFNYD-ASIHNVAVVDGNNYQS------CRASPTSKSFSSGK-DQIKLSK 107 (131)
Q Consensus 37 ~~~VG~~~g-W~~~y~~Wa~~~~f~vGD~LvF~y~-~~~H~V~~V~~~~y~~------C~~~~~~~~~~~G~-~~v~L~~ 107 (131)
+..+|.++| -.|. ++..++++||++.|..+ ...|++...+.. ... ............|. .++++++
T Consensus 2 ~v~~g~~~g~~~F~----P~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 2 TVKMGADKGALVFE----PAKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred EEEEecCCCceeEe----CCEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCC
Confidence 345664333 3343 57789999999999864 367999864221 000 00000001122343 3567765
Q ss_pred -CceEEEcCCCCCCcCCCEEEEEeC
Q 039717 108 -GRNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 108 -G~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
|.+-|+|. +|++.||+-.|.|.
T Consensus 77 ~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CEEEEEEcC--CccccCCEEEEEEC
Confidence 99999998 89999999999884
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.98 E-value=9.8e-05 Score=52.80 Aligned_cols=86 Identities=20% Similarity=0.397 Sum_probs=58.5
Q ss_pred cceEEEec--CCC-CcccccccccCCCeeeeCCEEEEEecC--CCceEEEEcCCCCCCCCCCCCCccccCC-CcEEEcCC
Q 039717 34 ATSTFTVG--DTS-GWTYNIQSWANGKQFKAGDTLIFNYDA--SIHNVAVVDGNNYQSCRASPTSKSFSSG-KDQIKLSK 107 (131)
Q Consensus 34 ~a~~~~VG--~~~-gW~~~y~~Wa~~~~f~vGD~LvF~y~~--~~H~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~L~~ 107 (131)
...+..|| ++. +..|. ++..++++||+|.|.++. ..|+|.--+...|+. .......| ..++++++
T Consensus 22 ~~~~v~~G~~~~~g~~~F~----P~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s-----~~~~~~~G~t~s~Tf~~ 92 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFD----PPAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE-----SERVSEEGTTYEHTFEE 92 (115)
T ss_pred ceEEEEecccCCCCceeEe----CCEEEECCCCEEEEEECCCCCCEEEEECCCCCccc-----cccccCCCCEEEEEecC
Confidence 45678888 332 33343 577899999999999853 589998543334442 11112233 34788865
Q ss_pred -CceEEEcCCCCCCcCCCEEEEEe
Q 039717 108 -GRNYFICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 108 -G~~yFic~~~~HC~~GmKl~I~V 130 (131)
|.+-|+|.. |=..|||-.|.|
T Consensus 93 ~G~Y~Y~C~p--H~~~gM~G~I~V 114 (115)
T TIGR03102 93 PGIYLYVCVP--HEALGMKGAVVV 114 (115)
T ss_pred CcEEEEEccC--CCCCCCEEEEEE
Confidence 999999984 866799999988
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.92 E-value=6.4e-05 Score=54.81 Aligned_cols=69 Identities=25% Similarity=0.351 Sum_probs=51.1
Q ss_pred cCCCeeeeCCEEEEEecCC-CceEEEEcCCCCCCCCCCCCCccccCC-C--cEEEcC-CCceEEEcCCCCCCcCCCEEEE
Q 039717 54 ANGKQFKAGDTLIFNYDAS-IHNVAVVDGNNYQSCRASPTSKSFSSG-K--DQIKLS-KGRNYFICSIPGHCEAGLKLAV 128 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~~-~H~V~~V~~~~y~~C~~~~~~~~~~~G-~--~~v~L~-~G~~yFic~~~~HC~~GmKl~I 128 (131)
++..+.++||++.|.+... .|||......+ + .....+..+ + .+.+++ +|.|.|+|.. |=..|||-.|
T Consensus 53 PA~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~-----~-~g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~I 124 (128)
T COG3794 53 PAEVTVKPGDTVTWVNTDSVGHNVTAVGGMD-----P-EGSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKI 124 (128)
T ss_pred CcEEEECCCCEEEEEECCCCCceEEEeCCCC-----c-ccccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEE
Confidence 6889999999999999876 99999875441 1 111222222 2 356776 4999999985 8888999999
Q ss_pred Ee
Q 039717 129 DA 130 (131)
Q Consensus 129 ~V 130 (131)
.|
T Consensus 125 vV 126 (128)
T COG3794 125 VV 126 (128)
T ss_pred Ee
Confidence 87
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.81 E-value=0.00014 Score=52.05 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=49.5
Q ss_pred cCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCccccCCCcEEEcCC-CceEEEcCCCCCCcCCCEEEEEe
Q 039717 54 ANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSK-GRNYFICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~-G~~yFic~~~~HC~~GmKl~I~V 130 (131)
++..++++||+|.|.+....|+|.......-+. .++...-.+...++++++ |.+-|.|. .|=..||+-.|+|
T Consensus 14 P~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~V 86 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQV 86 (116)
T ss_pred CCEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEE
Confidence 577899999999999987789988643211110 011100011223677765 99999998 6999999999987
No 9
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.07 E-value=0.0028 Score=49.28 Aligned_cols=72 Identities=25% Similarity=0.430 Sum_probs=45.5
Q ss_pred eeCCEEEEEecCC---CceEEEEc-CCCCCCCCCC---CCC---------c----cccCCCc-E--E-EcCCCceEEEcC
Q 039717 60 KAGDTLIFNYDAS---IHNVAVVD-GNNYQSCRAS---PTS---------K----SFSSGKD-Q--I-KLSKGRNYFICS 115 (131)
Q Consensus 60 ~vGD~LvF~y~~~---~H~V~~V~-~~~y~~C~~~---~~~---------~----~~~~G~~-~--v-~L~~G~~yFic~ 115 (131)
-+|-++.|+|.+. .|+...|. ...+..+..- ..+ . -..+|.. . + .|++|.||++|+
T Consensus 91 PAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC~ 170 (196)
T PF06525_consen 91 PAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVCG 170 (196)
T ss_pred cCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEcc
Confidence 4788888888543 79999883 3333443221 111 0 0112332 2 1 345699999999
Q ss_pred CCCCCcCCCEEEEEeC
Q 039717 116 IPGHCEAGLKLAVDAS 131 (131)
Q Consensus 116 ~~~HC~~GmKl~I~V~ 131 (131)
++||=+.||-..+.|+
T Consensus 171 ipGHA~sGMw~~LiVs 186 (196)
T PF06525_consen 171 IPGHAESGMWGVLIVS 186 (196)
T ss_pred CCChhhcCCEEEEEEe
Confidence 9999999998877764
No 10
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=96.99 E-value=0.0058 Score=40.57 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=46.0
Q ss_pred cCCCeeeeCCEEEEEecC-CCceEEEEcCCCCCCCCCCCCCccccCCC-cEEEcCC-CceEEEcCCCCCCcCCCEEEEEe
Q 039717 54 ANGKQFKAGDTLIFNYDA-SIHNVAVVDGNNYQSCRASPTSKSFSSGK-DQIKLSK-GRNYFICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~-~~H~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~L~~-G~~yFic~~~~HC~~GmKl~I~V 130 (131)
++..++++||+|.|.... ..|||...+..+ ..=+...+ ....|. .++++++ |.+-|.|.... .||-.|.|
T Consensus 10 P~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V 82 (83)
T TIGR02657 10 TPELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVV 82 (83)
T ss_pred CCEEEECCCCEEEEEECCCCCccEEecCCCC-cccccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEE
Confidence 456889999999998864 489998643221 11000111 123333 3678865 99999999844 59998887
Q ss_pred C
Q 039717 131 S 131 (131)
Q Consensus 131 ~ 131 (131)
.
T Consensus 83 ~ 83 (83)
T TIGR02657 83 E 83 (83)
T ss_pred C
Confidence 3
No 11
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.50 E-value=0.017 Score=42.82 Aligned_cols=73 Identities=23% Similarity=0.379 Sum_probs=45.9
Q ss_pred CCeeeeCCEEEEEecCC----CceEEEEcCC-CCC------------CCCCCCCCccccCC-----CcEEEcCC-CceEE
Q 039717 56 GKQFKAGDTLIFNYDAS----IHNVAVVDGN-NYQ------------SCRASPTSKSFSSG-----KDQIKLSK-GRNYF 112 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~~----~H~V~~V~~~-~y~------------~C~~~~~~~~~~~G-----~~~v~L~~-G~~yF 112 (131)
..+++.||++.|...+. .|........ .+. .|....+ -.+| +.++++++ |.+||
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~---~~~g~~~~~~~tf~f~~aGtywy 129 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP---PKSGKFGYTDFTYHFSTAGTYWY 129 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC---CCCCccceeEEEEECCCCeEEEE
Confidence 35578999999988643 5666654311 110 0111111 1122 23566655 99999
Q ss_pred EcCCCCCCcCCCEEEEEeC
Q 039717 113 ICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 113 ic~~~~HC~~GmKl~I~V~ 131 (131)
.|..++|=+.||.-.|.|.
T Consensus 130 hC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 130 LCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EcCChhHHHCCCEEEEEEC
Confidence 9999999999999888773
No 12
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=96.14 E-value=0.02 Score=45.68 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=20.8
Q ss_pred eeCCEEEE---EecCC-C----c-eEEEEcCCCCCCCCC
Q 039717 60 KAGDTLIF---NYDAS-I----H-NVAVVDGNNYQSCRA 89 (131)
Q Consensus 60 ~vGD~LvF---~y~~~-~----H-~V~~V~~~~y~~C~~ 89 (131)
+.||.|-+ +|+.+ . + =++.|++++|+.|+.
T Consensus 48 ~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~ 86 (233)
T KOG3858|consen 48 QIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCEL 86 (233)
T ss_pred ccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhc
Confidence 45888877 45432 2 2 356889999999996
No 13
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=95.88 E-value=0.053 Score=42.00 Aligned_cols=25 Identities=36% Similarity=0.763 Sum_probs=21.6
Q ss_pred CCCceEEEcCCCCCCcCCCEEEEEe
Q 039717 106 SKGRNYFICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 106 ~~G~~yFic~~~~HC~~GmKl~I~V 130 (131)
.+|.+|++|+.+||-+.||=..+.|
T Consensus 160 ~~G~YwlvCgipGHAesGMw~~lIV 184 (195)
T TIGR03094 160 SAGKYWLVCGITGHAESGMWAVVIV 184 (195)
T ss_pred CCeeEEEEcccCChhhcCcEEEEEE
Confidence 4599999999999999999766655
No 14
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.68 E-value=0.031 Score=38.29 Aligned_cols=64 Identities=22% Similarity=0.373 Sum_probs=29.9
Q ss_pred cCCCeeeeCC--EEEEEec-CCCceEEEEcCCCCCCCCCCCCCccccCCCc-EEEc---CCCceEEEcCCCCCCcCCCEE
Q 039717 54 ANGKQFKAGD--TLIFNYD-ASIHNVAVVDGNNYQSCRASPTSKSFSSGKD-QIKL---SKGRNYFICSIPGHCEAGLKL 126 (131)
Q Consensus 54 a~~~~f~vGD--~LvF~y~-~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~-~v~L---~~G~~yFic~~~~HC~~GmKl 126 (131)
++..+++.|+ +|+|.-. ...|++.. ++- ........|.+ ++++ ++|.|=|+|+...+ ||-
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~~--------~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G 100 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRPHEFVI-PDL--------GISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKG 100 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS-EEEEE-GGG--------TEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB-
T ss_pred cCEEEEcCCCeEEEEEEECCCCcEEEEE-CCC--------ceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----cee
Confidence 4678999999 5555443 34566643 221 11123334443 4555 44999999998664 555
Q ss_pred EEEe
Q 039717 127 AVDA 130 (131)
Q Consensus 127 ~I~V 130 (131)
.|.|
T Consensus 101 ~liV 104 (104)
T PF13473_consen 101 TLIV 104 (104)
T ss_dssp ----
T ss_pred cccC
Confidence 4443
No 15
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=93.70 E-value=0.075 Score=39.49 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=23.6
Q ss_pred CeeeeCCEEEEE---ecCC--------CceEEEEcCCCCCCCCC
Q 039717 57 KQFKAGDTLIFN---YDAS--------IHNVAVVDGNNYQSCRA 89 (131)
Q Consensus 57 ~~f~vGD~LvF~---y~~~--------~H~V~~V~~~~y~~C~~ 89 (131)
...+.||.|-|- |+.. ...++.|++++|+.|+.
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~ 67 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSL 67 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCC
Confidence 456789999984 4333 35678899999999996
No 16
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.55 E-value=0.19 Score=37.90 Aligned_cols=77 Identities=26% Similarity=0.452 Sum_probs=46.4
Q ss_pred cCCCeeeeCCEEEEEecCC---CceEEEEcC----CCCCC--------CCCCCCCccccCCCc---EEEcC-CCceEEEc
Q 039717 54 ANGKQFKAGDTLIFNYDAS---IHNVAVVDG----NNYQS--------CRASPTSKSFSSGKD---QIKLS-KGRNYFIC 114 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~~---~H~V~~V~~----~~y~~--------C~~~~~~~~~~~G~~---~v~L~-~G~~yFic 114 (131)
+++..++.|-++.|.=... .|....-.+ .-+.. =+..+. .....|.+ .+.++ +|.|=|+|
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~-v~L~PG~s~elvv~ft~~g~ye~~C 140 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNT-VTLAPGKSGELVVVFTGAGKYEFAC 140 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcce-eEeCCCCcEEEEEEecCCccEEEEe
Confidence 5678889999998865433 344432100 00000 011111 12333443 45555 59999999
Q ss_pred CCCCCCcCCCEEEEEeC
Q 039717 115 SIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 115 ~~~~HC~~GmKl~I~V~ 131 (131)
.+|||=+.||.-.|+|+
T Consensus 141 ~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 141 NIPGHYEAGMVGEITVS 157 (158)
T ss_pred cCCCcccCCcEEEEEeC
Confidence 99999999999999985
No 17
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=90.65 E-value=0.36 Score=35.52 Aligned_cols=62 Identities=18% Similarity=0.354 Sum_probs=37.3
Q ss_pred cccccccCCCeeeeCCEEEEEecC---CCceEEEEcCCCCCCCCCCCCCccccCCCc-EEEc--CC-CceEEEcCCCCCC
Q 039717 48 YNIQSWANGKQFKAGDTLIFNYDA---SIHNVAVVDGNNYQSCRASPTSKSFSSGKD-QIKL--SK-GRNYFICSIPGHC 120 (131)
Q Consensus 48 ~~y~~Wa~~~~f~vGD~LvF~y~~---~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~-~v~L--~~-G~~yFic~~~~HC 120 (131)
+||.-=++..++++||.+.+.+.+ -.|++.. .+|. . ......|.. ++++ ++ |.+.|.|+. ||
T Consensus 54 ~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---i---s~~I~pGet~TitF~adKpG~Y~y~C~~--HP 122 (135)
T TIGR03096 54 FNVLNEPEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---I---SEVIKAGETKTISFKADKAGAFTIWCQL--HP 122 (135)
T ss_pred eeeEEcCCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---c---ceEECCCCeEEEEEECCCCEEEEEeCCC--CC
Confidence 356555778999999999887753 2355443 2232 1 112233433 3444 44 999999987 55
No 18
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=75.39 E-value=1.7 Score=24.71 Aligned_cols=18 Identities=28% Similarity=0.822 Sum_probs=10.8
Q ss_pred cccccCCCeeeeCCEEEE
Q 039717 50 IQSWANGKQFKAGDTLIF 67 (131)
Q Consensus 50 y~~Wa~~~~f~vGD~LvF 67 (131)
|..|..+++...||.+.|
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~ 18 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSY 18 (41)
T ss_dssp --B--TTCEE-TT-EEEE
T ss_pred CCCcCCCCEEcCCCEEEE
Confidence 467999999999999985
No 19
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=74.78 E-value=1.9 Score=29.82 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=7.6
Q ss_pred HHHHHHHHhcccccce
Q 039717 21 LIVLLFLRFHSTEATS 36 (131)
Q Consensus 21 ~~~~~~~~~~~~a~a~ 36 (131)
|+|+++|+.++.++|+
T Consensus 11 l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 11 LLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHhhhhhH
Confidence 3444444555555543
No 20
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=74.40 E-value=3.3 Score=29.31 Aligned_cols=31 Identities=35% Similarity=0.542 Sum_probs=18.7
Q ss_pred CCeeeeCCEEEEEe-cCCCceEEEE-cCCCCCC
Q 039717 56 GKQFKAGDTLIFNY-DASIHNVAVV-DGNNYQS 86 (131)
Q Consensus 56 ~~~f~vGD~LvF~y-~~~~H~V~~V-~~~~y~~ 86 (131)
.+.|++||.|+|+= +.+.--+++| .-..|++
T Consensus 29 r~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~s 61 (109)
T cd06555 29 RQQIKVGDKILFNDLDTGQQLLVKVVDIRKYDS 61 (109)
T ss_pred hhcCCCCCEEEEEEcCCCcEEEEEEEEEEecCC
Confidence 36899999999954 3333233344 3445553
No 21
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=74.15 E-value=2 Score=28.46 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=12.1
Q ss_pred CCCeeeeCCEEEEEecCCCc
Q 039717 55 NGKQFKAGDTLIFNYDASIH 74 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~~H 74 (131)
..+.+++||.++|.+.....
T Consensus 70 ~~n~L~~GD~~~F~~~~~~~ 89 (100)
T PF02362_consen 70 RDNGLKEGDVCVFELIGNSN 89 (100)
T ss_dssp HHCT--TT-EEEEEE-SSSC
T ss_pred HHcCCCCCCEEEEEEecCCC
Confidence 45788999999999975333
No 22
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=73.97 E-value=13 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=19.6
Q ss_pred CCeeeeCCEEEEEecCC----CceEEEEcC
Q 039717 56 GKQFKAGDTLIFNYDAS----IHNVAVVDG 81 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~~----~H~V~~V~~ 81 (131)
...++.||.++|+.+.+ .|.|..+.+
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v~~ 87 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEINN 87 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEEEC
Confidence 35789999999998653 477777743
No 23
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=70.36 E-value=3.8 Score=27.06 Aligned_cols=18 Identities=33% Similarity=0.846 Sum_probs=13.5
Q ss_pred CCCeeeeCCEEEE-EecCC
Q 039717 55 NGKQFKAGDTLIF-NYDAS 72 (131)
Q Consensus 55 ~~~~f~vGD~LvF-~y~~~ 72 (131)
+...|+|||.|.+ .|+++
T Consensus 25 NDRdf~VGD~L~L~E~~~~ 43 (72)
T PF12961_consen 25 NDRDFQVGDILVLREWDNG 43 (72)
T ss_pred cCCCCCCCCEEEEEEecCC
Confidence 5678999999988 34433
No 24
>PLN02604 oxidoreductase
Probab=70.35 E-value=37 Score=30.17 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=46.0
Q ss_pred cccccccccCCCeeeeCCEEEEEecCC----CceEEE-----EcCCCCCCCCCCCCC-ccccCCCc---EEEcCC-CceE
Q 039717 46 WTYNIQSWANGKQFKAGDTLIFNYDAS----IHNVAV-----VDGNNYQSCRASPTS-KSFSSGKD---QIKLSK-GRNY 111 (131)
Q Consensus 46 W~~~y~~Wa~~~~f~vGD~LvF~y~~~----~H~V~~-----V~~~~y~~C~~~~~~-~~~~~G~~---~v~L~~-G~~y 111 (131)
|.+|=+.......++.||+++++..+. .|++.. .....+|- .+... .....|.+ .|++++ |++|
T Consensus 46 ~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG--~~~~tq~~i~pg~s~~y~f~~~~~Gt~w 123 (566)
T PLN02604 46 ITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG--TEGVTQCPILPGETFTYEFVVDRPGTYL 123 (566)
T ss_pred EEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC--CCccccCccCCCCeEEEEEEcCCCEEEE
Confidence 444422233458889999999988543 234332 11000111 00000 01223332 455655 9999
Q ss_pred EEcCCCCCCcCCCEEEEEe
Q 039717 112 FICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 112 Fic~~~~HC~~GmKl~I~V 130 (131)
|=|-...|=..||.-.|.|
T Consensus 124 yH~H~~~q~~~Gl~G~liV 142 (566)
T PLN02604 124 YHAHYGMQREAGLYGSIRV 142 (566)
T ss_pred EeeCcHHHHhCCCeEEEEE
Confidence 9999988888999777655
No 25
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=69.65 E-value=6.9 Score=28.28 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=15.7
Q ss_pred CeeeeCCEEEEEecCCCc
Q 039717 57 KQFKAGDTLIFNYDASIH 74 (131)
Q Consensus 57 ~~f~vGD~LvF~y~~~~H 74 (131)
+.|++||.+.|-+++..|
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 678999999999987666
No 26
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=69.18 E-value=16 Score=27.87 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=46.3
Q ss_pred EEEecCCCCcccccccc------cCCCeeeeCCEEEEEecCC--CceEEEEcCCCCCCCCCCCCCcc-ccCCC-cE--EE
Q 039717 37 TFTVGDTSGWTYNIQSW------ANGKQFKAGDTLIFNYDAS--IHNVAVVDGNNYQSCRASPTSKS-FSSGK-DQ--IK 104 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~W------a~~~~f~vGD~LvF~y~~~--~H~V~~V~~~~y~~C~~~~~~~~-~~~G~-~~--v~ 104 (131)
..++|-.=.|.+.|.+. .+...+.+|+.+.|.-++. .|+-.. +.-..+. --.|. .. ++
T Consensus 93 i~v~~~qw~W~f~Y~~~~~~~~~~~~l~vp~g~~v~~~~ts~DV~Hsf~i----------p~~~~k~da~PG~~~~~~~~ 162 (201)
T TIGR02866 93 VKVEGHQWYWSFDYPESRRGFTTVNELVVPAGTPVRLQVTSKDVIHSFWV----------PELGGKIDAIPGQYNALWFN 162 (201)
T ss_pred EEEEEEEeEEEEEcCCcCCCccccCEEEEEcCCEEEEEEEeCchhhcccc----------cccCceEEecCCcEEEEEEE
Confidence 35566555677888654 2345677888888877532 232222 1111111 11232 23 44
Q ss_pred cCC-CceEEEcCC---CCCCcCCCEEEEEe
Q 039717 105 LSK-GRNYFICSI---PGHCEAGLKLAVDA 130 (131)
Q Consensus 105 L~~-G~~yFic~~---~~HC~~GmKl~I~V 130 (131)
.++ |.++..|+. .+| ..|++.|.|
T Consensus 163 ~~~~G~y~~~c~e~cG~~h--~~M~~~v~v 190 (201)
T TIGR02866 163 ADEPGVYYGYCAELCGAGH--SLMLFKVVV 190 (201)
T ss_pred eCCCEEEEEEehhhCCcCc--cCCeEEEEE
Confidence 454 999999998 345 559888876
No 27
>PLN02354 copper ion binding / oxidoreductase
Probab=68.36 E-value=58 Score=28.97 Aligned_cols=72 Identities=11% Similarity=0.185 Sum_probs=42.9
Q ss_pred cccC-CCeeeeCCEEEEEecCC--------CceEEEEcCCCC-----CCCCCCCCCccccCCCc---EEEc-CC-CceEE
Q 039717 52 SWAN-GKQFKAGDTLIFNYDAS--------IHNVAVVDGNNY-----QSCRASPTSKSFSSGKD---QIKL-SK-GRNYF 112 (131)
Q Consensus 52 ~Wa~-~~~f~vGD~LvF~y~~~--------~H~V~~V~~~~y-----~~C~~~~~~~~~~~G~~---~v~L-~~-G~~yF 112 (131)
+|+- ...++.||+|+.+..+. -|-+.|-..... ..|-.. .|.+ .|++ +. |++||
T Consensus 54 q~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~-------PG~sf~Y~F~~~~q~GT~WY 126 (552)
T PLN02354 54 QFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIP-------PGTNFTYHFQPKDQIGSYFY 126 (552)
T ss_pred CCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCC-------CCCcEEEEEEeCCCCcceEE
Confidence 4553 47889999999877543 155554322112 234221 1322 5666 34 99999
Q ss_pred EcCCCCCCcCCCEEEEEe
Q 039717 113 ICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 113 ic~~~~HC~~GmKl~I~V 130 (131)
=+-...+=..|+.-.+.|
T Consensus 127 HsH~~~Q~~~Gl~G~lII 144 (552)
T PLN02354 127 YPSTGMHRAAGGFGGLRV 144 (552)
T ss_pred ecCccceecCCccceEEE
Confidence 987777777777655544
No 28
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=66.46 E-value=17 Score=29.85 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=42.1
Q ss_pred CCeeeeCCEEEEEecCC-----CceEEEEcCCCCCCCCCCCCCccccCCCc---EEEcCC-CceEEEcCC----CCCCcC
Q 039717 56 GKQFKAGDTLIFNYDAS-----IHNVAVVDGNNYQSCRASPTSKSFSSGKD---QIKLSK-GRNYFICSI----PGHCEA 122 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~L~~-G~~yFic~~----~~HC~~ 122 (131)
..+++.||+++..+.+. .|++..=-....+ ...+......|.+ .|++++ |++||-|.. ..|=..
T Consensus 60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~d---g~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~ 136 (311)
T TIGR02376 60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGAL---GGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVS 136 (311)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeeeecCCCccC---CCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhc
Confidence 36789999999888654 5666531100000 0011112333433 455555 999999985 347778
Q ss_pred CCEEEEEe
Q 039717 123 GLKLAVDA 130 (131)
Q Consensus 123 GmKl~I~V 130 (131)
||.-.+.|
T Consensus 137 Gl~G~liV 144 (311)
T TIGR02376 137 GMNGAIMV 144 (311)
T ss_pred CcceEEEe
Confidence 98777665
No 29
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=64.17 E-value=37 Score=29.02 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.2
Q ss_pred cEEEcCCCceEEEcCC
Q 039717 101 DQIKLSKGRNYFICSI 116 (131)
Q Consensus 101 ~~v~L~~G~~yFic~~ 116 (131)
-+++|.+|+|-|+|+.
T Consensus 90 l~~~L~pGtY~~~C~~ 105 (375)
T PRK10378 90 MTANLQPGEYDMTCGL 105 (375)
T ss_pred EEEecCCceEEeecCc
Confidence 3577778999999976
No 30
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=63.40 E-value=32 Score=22.38 Aligned_cols=16 Identities=13% Similarity=0.432 Sum_probs=13.3
Q ss_pred eeeeCCEEEEEecCCC
Q 039717 58 QFKAGDTLIFNYDASI 73 (131)
Q Consensus 58 ~f~vGD~LvF~y~~~~ 73 (131)
+|++||.|.|.+..+.
T Consensus 2 ~~~~Ge~v~~~~~~~~ 17 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNR 17 (83)
T ss_pred cccCCCEEEEEEEeCC
Confidence 6899999999997654
No 31
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=60.97 E-value=7.6 Score=28.25 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=17.0
Q ss_pred CCc-eEEEcCCCCCCcCCCEEEEE
Q 039717 107 KGR-NYFICSIPGHCEAGLKLAVD 129 (131)
Q Consensus 107 ~G~-~yFic~~~~HC~~GmKl~I~ 129 (131)
+|. |=|+|++|||=. .||-.++
T Consensus 102 ~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 102 AGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred CCCcceEEEcCCCcHH-hceEEEe
Confidence 465 669999999975 6886654
No 32
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=59.55 E-value=6.9 Score=25.15 Aligned_cols=29 Identities=21% Similarity=0.580 Sum_probs=18.0
Q ss_pred CCcc-----cccccccCCCeeeeCCEEEEEecCC
Q 039717 44 SGWT-----YNIQSWANGKQFKAGDTLIFNYDAS 72 (131)
Q Consensus 44 ~gW~-----~~y~~Wa~~~~f~vGD~LvF~y~~~ 72 (131)
.||. |...+...-..+++||.|.|.+...
T Consensus 23 l~wpaMTM~F~v~~~~~l~~l~~Gd~V~F~~~~~ 56 (70)
T PF11604_consen 23 LGWPAMTMDFPVADPVDLAGLKPGDKVRFTFERT 56 (70)
T ss_dssp CTB-SEEEEEE--TTSEESS-STT-EEEEEEEEE
T ss_pred CCCCCeEEEEEcCChhhhhcCCCCCEEEEEEEEC
Confidence 4675 3455556668999999999999753
No 33
>COG3241 Azurin [Energy production and conversion]
Probab=58.82 E-value=4.9 Score=29.59 Aligned_cols=20 Identities=30% Similarity=0.828 Sum_probs=14.8
Q ss_pred cEEEcC-----CCce-EEEcCCCCCC
Q 039717 101 DQIKLS-----KGRN-YFICSIPGHC 120 (131)
Q Consensus 101 ~~v~L~-----~G~~-yFic~~~~HC 120 (131)
++++++ +|.. -|+|++|||=
T Consensus 115 ~S~Tfd~~kL~~g~~Y~FfCtFPGH~ 140 (151)
T COG3241 115 TSLTFDPAKLADGVEYKFFCTFPGHG 140 (151)
T ss_pred ceEecCHHHhcCCceEEEEEecCCcH
Confidence 577764 4754 5999999993
No 34
>PRK02888 nitrous-oxide reductase; Validated
Probab=57.75 E-value=39 Score=30.87 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=37.6
Q ss_pred CCCeeeeCCEEEEEecCC------CceEEEEcCCCCCCCCCCCCCccccCCC-cE--EEcCC-CceEEEcCCCCCCcC--
Q 039717 55 NGKQFKAGDTLIFNYDAS------IHNVAVVDGNNYQSCRASPTSKSFSSGK-DQ--IKLSK-GRNYFICSIPGHCEA-- 122 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~------~H~V~~V~~~~y~~C~~~~~~~~~~~G~-~~--v~L~~-G~~yFic~~~~HC~~-- 122 (131)
...++++||.+.|...+- .|.... ..|. .......|. .+ |+.++ |.+|++|+.. |-.
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~n------I~~dv~PG~t~svtF~adkPGvy~~~Ctef--CGa~H 623 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYG------VNMEVAPQATASVTFTADKPGVYWYYCTWF--CHALH 623 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceee---cccC------ccEEEcCCceEEEEEEcCCCEEEEEECCcc--cccCc
Confidence 457889999999998641 343332 1111 001112233 23 44444 9999999973 443
Q ss_pred -CCEEEEEe
Q 039717 123 -GLKLAVDA 130 (131)
Q Consensus 123 -GmKl~I~V 130 (131)
+|+-.|.|
T Consensus 624 ~~M~G~~iV 632 (635)
T PRK02888 624 MEMRGRMLV 632 (635)
T ss_pred ccceEEEEE
Confidence 58777665
No 35
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=53.69 E-value=21 Score=25.19 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=37.1
Q ss_pred cCCCeeeeCCEEEEEecC--CCceEEEEcCCCCCCCCCCCCCccccCCCc---EEEcCC-CceEEEcCCCCCCcCC---C
Q 039717 54 ANGKQFKAGDTLIFNYDA--SIHNVAVVDGNNYQSCRASPTSKSFSSGKD---QIKLSK-GRNYFICSIPGHCEAG---L 124 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~--~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~L~~-G~~yFic~~~~HC~~G---m 124 (131)
.+...+..|+.+.|.-.+ -.|+-.. .+-.-+ ...-.|.. .++.++ |.+++.|+. -|-.| |
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DViHsf~i-p~~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M 113 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDVIHSFWI-PELGIK--------MDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFM 113 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS-EEEEE-TTCTEE--------EEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-
T ss_pred cceecccccceEeEEEEcCCccccccc-cccCcc--------cccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCC
Confidence 345667889999888754 2565553 111100 01112332 344454 999999987 67776 8
Q ss_pred EEEEEe
Q 039717 125 KLAVDA 130 (131)
Q Consensus 125 Kl~I~V 130 (131)
+..|.|
T Consensus 114 ~~~v~V 119 (120)
T PF00116_consen 114 PGKVIV 119 (120)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888876
No 36
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=50.04 E-value=46 Score=24.63 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=27.8
Q ss_pred CeeeeCCEEEEEecC-----CCceEEEEcCCCCCCCCCCC
Q 039717 57 KQFKAGDTLIFNYDA-----SIHNVAVVDGNNYQSCRASP 91 (131)
Q Consensus 57 ~~f~vGD~LvF~y~~-----~~H~V~~V~~~~y~~C~~~~ 91 (131)
...+.||++++.-.. .-|+.+-++....-.|+...
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCC
Confidence 578999999986542 35999999988899999753
No 37
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=49.27 E-value=69 Score=28.84 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=50.5
Q ss_pred cccccccccC--CCeeeeCCEEEEEecCC---CceEE------EEcCCC--CCCCCCCCCCccccCCCcEE--EcC-CCc
Q 039717 46 WTYNIQSWAN--GKQFKAGDTLIFNYDAS---IHNVA------VVDGNN--YQSCRASPTSKSFSSGKDQI--KLS-KGR 109 (131)
Q Consensus 46 W~~~y~~Wa~--~~~f~vGD~LvF~y~~~---~H~V~------~V~~~~--y~~C~~~~~~~~~~~G~~~v--~L~-~G~ 109 (131)
|++|=..|.. ..+++.||.+.+.+.+. .|.+. ++...+ |.. ....+...-.+..++ ..+ +|.
T Consensus 488 wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv~V~Pg~t~~~~f~ad~pG~ 565 (587)
T TIGR01480 488 WSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTVDVPPGGKRSFRVTADALGR 565 (587)
T ss_pred EEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCceeeCCCCEEEEEEECCCCeE
Confidence 8887555663 58899999999999654 34332 332111 110 001111222233344 444 499
Q ss_pred eEEEcCCCCCCcCCCEEEEEe
Q 039717 110 NYFICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 110 ~yFic~~~~HC~~GmKl~I~V 130 (131)
.+|=|-...|=+.||--.+.|
T Consensus 566 w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 566 WAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred EEEcCCCHHHHhCcCcEEEEe
Confidence 999999999999999877766
No 38
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=49.27 E-value=8.7 Score=31.45 Aligned_cols=10 Identities=40% Similarity=0.418 Sum_probs=7.3
Q ss_pred Cccccccccc
Q 039717 1 MARQAQGRCS 10 (131)
Q Consensus 1 ~~~m~~~~~~ 10 (131)
||-|+-||=.
T Consensus 1 MaMmMTGRVL 10 (291)
T PTZ00459 1 MAMMMTGRVL 10 (291)
T ss_pred CccchhchHH
Confidence 7878877744
No 39
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=48.23 E-value=17 Score=26.66 Aligned_cols=31 Identities=29% Similarity=0.631 Sum_probs=23.8
Q ss_pred EEEecCCCCcccccccccC-CCeeeeCCEEEEE
Q 039717 37 TFTVGDTSGWTYNIQSWAN-GKQFKAGDTLIFN 68 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~Wa~-~~~f~vGD~LvF~ 68 (131)
...|||+.| .++.+-|-. +..|++||+|.|.
T Consensus 40 ~~kVaD~Tg-sI~isvW~e~~~~~~PGDIirLt 71 (134)
T KOG3416|consen 40 SCKVADETG-SINISVWDEEGCLIQPGDIIRLT 71 (134)
T ss_pred EEEEecccc-eEEEEEecCcCcccCCccEEEec
Confidence 467999887 446667763 5899999999874
No 40
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=48.10 E-value=34 Score=18.62 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=18.8
Q ss_pred EEcCC-CceEEEcCCCCCCcCCCE
Q 039717 103 IKLSK-GRNYFICSIPGHCEAGLK 125 (131)
Q Consensus 103 v~L~~-G~~yFic~~~~HC~~GmK 125 (131)
..++. |.-||-.++...|..|+.
T Consensus 4 Wav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 4 WAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred EEEcCCCCEEEECcCCCCCCCCCC
Confidence 34554 999999999999999974
No 41
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=46.01 E-value=87 Score=25.12 Aligned_cols=82 Identities=17% Similarity=0.245 Sum_probs=46.3
Q ss_pred EEecCCCCccccccc---cc-CCCeeeeCCEEEEEecCC--CceEEEEcCCCCCCCCCCCCCccccCCC-c--EEEcCC-
Q 039717 38 FTVGDTSGWTYNIQS---WA-NGKQFKAGDTLIFNYDAS--IHNVAVVDGNNYQSCRASPTSKSFSSGK-D--QIKLSK- 107 (131)
Q Consensus 38 ~~VG~~~gW~~~y~~---Wa-~~~~f~vGD~LvF~y~~~--~H~V~~V~~~~y~~C~~~~~~~~~~~G~-~--~v~L~~- 107 (131)
.++|-.-.|.+.|.+ +. +...+-+|..+.|+-++. .|+-.. .+-..+.=. . .|. . .++.++
T Consensus 116 ~v~~~qw~W~f~Yp~~~~~t~n~l~lPv~~~V~f~ltS~DViHsF~I-P~l~~k~d~-------i-PG~~~~~~~~~~~~ 186 (247)
T COG1622 116 EVTAYQWKWLFIYPDYGIATVNELVLPVGRPVRFKLTSADVIHSFWI-PQLGGKIDA-------I-PGMTTELWLTANKP 186 (247)
T ss_pred EEEEEEEEEEEEccCcCccccceEEEeCCCeEEEEEEechhceeEEe-cCCCceeee-------c-CCceEEEEEecCCC
Confidence 334444456666543 22 447888999999998754 344332 111111100 0 122 1 344455
Q ss_pred CceEEEcCCCCCCcCC---CEEEEEe
Q 039717 108 GRNYFICSIPGHCEAG---LKLAVDA 130 (131)
Q Consensus 108 G~~yFic~~~~HC~~G---mKl~I~V 130 (131)
|.|+.+|+. .|-.| |++.|.|
T Consensus 187 G~Y~g~Cae--~CG~gH~~M~~~v~v 210 (247)
T COG1622 187 GTYRGICAE--YCGPGHSFMRFKVIV 210 (247)
T ss_pred eEEEEEcHh--hcCCCcccceEEEEE
Confidence 999999986 46554 9998876
No 42
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=44.08 E-value=86 Score=20.17 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=23.3
Q ss_pred EEEEEecCCCceEEEE-cCCCCCCCCCCCCCccccCC-CcEEEcCCCce
Q 039717 64 TLIFNYDASIHNVAVV-DGNNYQSCRASPTSKSFSSG-KDQIKLSKGRN 110 (131)
Q Consensus 64 ~LvF~y~~~~H~V~~V-~~~~y~~C~~~~~~~~~~~G-~~~v~L~~G~~ 110 (131)
.+.|.|..+..+|..+ +-.+++. ..|...-.+| ...+.|++|.|
T Consensus 3 ~v~f~~~~~a~~V~v~G~F~~W~~---~~pm~~~~~~~~~~~~L~~g~y 48 (79)
T cd02859 3 PTTFVWPGGGKEVYVTGSFDNWKK---KIPLEKSGKGFSATLRLPPGKY 48 (79)
T ss_pred EEEEEEcCCCcEEEEEEEcCCCCc---cccceECCCCcEEEEEcCCCCE
Confidence 3678888777777776 3334433 1222222222 23456677764
No 43
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=42.30 E-value=46 Score=23.72 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=24.3
Q ss_pred EEEecCCCCcccccccccCC-CeeeeCCEEEEE
Q 039717 37 TFTVGDTSGWTYNIQSWANG-KQFKAGDTLIFN 68 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~Wa~~-~~f~vGD~LvF~ 68 (131)
+.++||..| .+..+.|-+. ..|++||+|.++
T Consensus 43 ~~~l~D~TG-~I~~tlW~~~a~~l~~GdvV~I~ 74 (129)
T PRK06461 43 EAVVGDETG-RVKLTLWGEQAGSLKEGEVVEIE 74 (129)
T ss_pred EEEEECCCC-EEEEEEeCCccccCCCCCEEEEE
Confidence 457899888 5677888754 468999999887
No 44
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=42.27 E-value=97 Score=21.33 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=29.3
Q ss_pred CCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCC-ccccCCCcEEEcCCCceEEE
Q 039717 55 NGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTS-KSFSSGKDQIKLSKGRNYFI 113 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~-~~~~~G~~~v~L~~G~~yFi 113 (131)
.+..+++.|..+.+-.++..-+.+|+...|.- ....+. .......-.|++.+|..||+
T Consensus 41 ~~~~v~vdg~~ig~l~~g~y~~~~v~pG~h~i-~~~~~~~~~~~~~~l~~~~~~G~~yy~ 99 (117)
T PF11008_consen 41 VKPDVYVDGELIGELKNGGYFYVEVPPGKHTI-SAKSEFSSSPGANSLDVTVEAGKTYYV 99 (117)
T ss_pred ccceEEECCEEEEEeCCCeEEEEEECCCcEEE-EEecCccCCCCccEEEEEEcCCCEEEE
Confidence 55677788887766655555555554443321 111111 11111122566677887765
No 45
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=41.48 E-value=27 Score=22.34 Aligned_cols=31 Identities=26% Similarity=0.537 Sum_probs=24.8
Q ss_pred EEEecCCCCcccccccccCC--CeeeeCCEEEEE
Q 039717 37 TFTVGDTSGWTYNIQSWANG--KQFKAGDTLIFN 68 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~Wa~~--~~f~vGD~LvF~ 68 (131)
..+++|+.| .+...-|... ..+..||.+.+.
T Consensus 26 ~~~l~D~TG-~i~~~~W~~~~~~~~~~G~vv~i~ 58 (82)
T cd04491 26 SGLVGDETG-TIRFTLWDEKAADDLEPGDVVRIE 58 (82)
T ss_pred EEEEECCCC-EEEEEEECchhcccCCCCCEEEEE
Confidence 567889888 7777888765 778899988877
No 46
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=40.29 E-value=34 Score=22.63 Aligned_cols=35 Identities=26% Similarity=0.604 Sum_probs=27.9
Q ss_pred eEEEecCCC---Cccc-------------ccccccCCCeeeeCCEEEEEec
Q 039717 36 STFTVGDTS---GWTY-------------NIQSWANGKQFKAGDTLIFNYD 70 (131)
Q Consensus 36 ~~~~VG~~~---gW~~-------------~y~~Wa~~~~f~vGD~LvF~y~ 70 (131)
.-|++|+.. .|+. ++..|.....+..|..++|+|-
T Consensus 17 ~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~ 67 (96)
T PF00686_consen 17 SVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYV 67 (96)
T ss_dssp EEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEE
T ss_pred EEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEE
Confidence 468899863 6983 2478999888999999999994
No 47
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=39.03 E-value=22 Score=19.97 Aligned_cols=18 Identities=28% Similarity=0.796 Sum_probs=14.4
Q ss_pred cccccCCCeeeeCCEEEE
Q 039717 50 IQSWANGKQFKAGDTLIF 67 (131)
Q Consensus 50 y~~Wa~~~~f~vGD~LvF 67 (131)
|..|..++....||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 457888888889998865
No 48
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=37.10 E-value=20 Score=28.78 Aligned_cols=23 Identities=35% Similarity=0.761 Sum_probs=18.7
Q ss_pred cEEEcCC-CceEEEcCCCCCCcCC
Q 039717 101 DQIKLSK-GRNYFICSIPGHCEAG 123 (131)
Q Consensus 101 ~~v~L~~-G~~yFic~~~~HC~~G 123 (131)
|.+.+++ |.+-|+|+..+||+.-
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r 280 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQR 280 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhH
Confidence 4567765 9999999999999753
No 49
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=34.83 E-value=3.1e+02 Score=23.93 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=15.8
Q ss_pred HHHHHHHhcccccceEEEecCCCC
Q 039717 22 IVLLFLRFHSTEATSTFTVGDTSG 45 (131)
Q Consensus 22 ~~~~~~~~~~~a~a~~~~VG~~~g 45 (131)
++.++.+.+.......|+||+..|
T Consensus 14 ~~~~~~~~~~~~~~~~~~vg~~~~ 37 (421)
T PRK09723 14 CLSCYTASAGTDDNVSYIVGNYYG 37 (421)
T ss_pred HHhhhhhhccccCceEEEEccccc
Confidence 333444455566788999999655
No 50
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=34.66 E-value=54 Score=24.01 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=22.4
Q ss_pred EEEcCCCceEEEcCCCCCCcCCCEEEEEe
Q 039717 102 QIKLSKGRNYFICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 102 ~v~L~~G~~yFic~~~~HC~~GmKl~I~V 130 (131)
++++.+|..|-|.+ ..|..||++...+
T Consensus 100 ~~~~~pG~~y~i~~--f~Cp~g~~v~ye~ 126 (143)
T PF09792_consen 100 TFTVSPGNSYVINT--FPCPAGQAVSYEM 126 (143)
T ss_pred ceEECCCCceEeCc--EeCCCCCEEEEEE
Confidence 57888899999986 5899999887654
No 51
>COG5569 Uncharacterized conserved protein [Function unknown]
Probab=34.00 E-value=35 Score=24.10 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=20.2
Q ss_pred cccccCCCeeeeCCEEEEEecC--CCceEEEE
Q 039717 50 IQSWANGKQFKAGDTLIFNYDA--SIHNVAVV 79 (131)
Q Consensus 50 y~~Wa~~~~f~vGD~LvF~y~~--~~H~V~~V 79 (131)
.++=+.=..++-||.++|.+.. +.-.|.||
T Consensus 75 Vkd~a~lsglKeGdkV~fvferv~gk~tv~qv 106 (108)
T COG5569 75 VKDQAKLSGLKEGDKVEFVFERVNGKLTVQQV 106 (108)
T ss_pred eccHHHhhccccCCcEEEEEEeeCCEEEEEEe
Confidence 4455556788999999999974 33444443
No 52
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.72 E-value=16 Score=27.80 Aligned_cols=23 Identities=22% Similarity=0.554 Sum_probs=17.9
Q ss_pred CeeeeCCEEEEEecCC----CceEEEE
Q 039717 57 KQFKAGDTLIFNYDAS----IHNVAVV 79 (131)
Q Consensus 57 ~~f~vGD~LvF~y~~~----~H~V~~V 79 (131)
.++++||.++|+.+.. -|.|..+
T Consensus 76 ~p~~vGdivVf~vegR~IPiVHRviK~ 102 (180)
T KOG3342|consen 76 DPIRVGDIVVFKVEGREIPIVHRVIKQ 102 (180)
T ss_pred CcceeccEEEEEECCccCchhHHHHHH
Confidence 5689999999999743 4777655
No 53
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=32.74 E-value=17 Score=22.85 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=13.0
Q ss_pred CCccccc-----ccccCCCeeeeCCEEEEE
Q 039717 44 SGWTYNI-----QSWANGKQFKAGDTLIFN 68 (131)
Q Consensus 44 ~gW~~~y-----~~Wa~~~~f~vGD~LvF~ 68 (131)
.+|.+.. +.=+...+.+.||.|+|+
T Consensus 39 ~~W~~~vNG~~~~~ga~~~~l~~GD~i~~~ 68 (68)
T PF14478_consen 39 SYWMYYVNGESANVGAGSYKLKDGDKITWY 68 (68)
T ss_dssp EEEEEEETTEE-SS-CCC-B--TTEEEEE-
T ss_pred ceeEEEECCEEhhcCcceeEeCCCCEEEeC
Confidence 4677422 223455888999999984
No 54
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.97 E-value=20 Score=25.35 Aligned_cols=16 Identities=44% Similarity=0.729 Sum_probs=13.7
Q ss_pred cCCCeeeeCCEEEEEe
Q 039717 54 ANGKQFKAGDTLIFNY 69 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y 69 (131)
++....++||+++|+=
T Consensus 29 ~krr~ik~GD~IiF~~ 44 (111)
T COG4043 29 PKRRQIKPGDKIIFNG 44 (111)
T ss_pred HhhcCCCCCCEEEEcC
Confidence 5678899999999984
No 55
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=31.05 E-value=85 Score=28.30 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=42.5
Q ss_pred ccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCC----CCccc-cCCCc-EEEcCC-CceEEEc
Q 039717 53 WANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASP----TSKSF-SSGKD-QIKLSK-GRNYFIC 114 (131)
Q Consensus 53 Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~----~~~~~-~~G~~-~v~L~~-G~~yFic 114 (131)
=.++++|-.=|.+.|+|++..-.++.+...+.|.-+.+- ....+ .+|++ +|+|.+ |+-|=++
T Consensus 209 ~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 209 PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 346799999999999999888888887777777755431 11111 23554 788875 8866443
No 56
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=30.81 E-value=40 Score=20.80 Aligned_cols=16 Identities=31% Similarity=0.754 Sum_probs=13.4
Q ss_pred CCCeeeeCCEEEEEec
Q 039717 55 NGKQFKAGDTLIFNYD 70 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~ 70 (131)
.++.|..||.|.|.+.
T Consensus 15 ~~~pv~~Gd~i~~~~~ 30 (64)
T PF02933_consen 15 EGRPVTKGDTIVFPFF 30 (64)
T ss_dssp TTEEEETT-EEEEEET
T ss_pred cCCCccCCCEEEEEeC
Confidence 5689999999999996
No 57
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=30.28 E-value=57 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=15.9
Q ss_pred cccccCCCeeeeCCEEEEEecC
Q 039717 50 IQSWANGKQFKAGDTLIFNYDA 71 (131)
Q Consensus 50 y~~Wa~~~~f~vGD~LvF~y~~ 71 (131)
..+...-..+++||.+.|.+..
T Consensus 80 v~~~~~l~~lk~G~~V~F~~~~ 101 (115)
T PRK09838 80 ITPQTKMSEIKTGDKVAFNFVQ 101 (115)
T ss_pred CCChhhhccCCCCCEEEEEEEE
Confidence 3334444678999999999863
No 58
>PF05868 Rotavirus_VP7: Rotavirus major outer capsid protein VP7; InterPro: IPR008818 This family consists of several Rotavirus major outer capsid protein VP7 sequences. The rotavirus capsid is composed of three concentric protein layers. Proteins VP4 and VP7 comprise the outer layer. VP4 forms spikes and is the viral attachment protein. VP7 is a glycoprotein and the major constituent of the outer protein layer [].; GO: 0016021 integral to membrane, 0019012 virion
Probab=30.26 E-value=37 Score=27.38 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEecCCCceEEEE-cCCCCCCCCC
Q 039717 66 IFNYDASIHNVAVV-DGNNYQSCRA 89 (131)
Q Consensus 66 vF~y~~~~H~V~~V-~~~~y~~C~~ 89 (131)
.++|++...+|.+. ++.+|+.|+.
T Consensus 60 ~~~ys~~~ydvidils~~d~~tc~I 84 (249)
T PF05868_consen 60 FCNYSSNNYDVIDILSCYDYSTCDI 84 (249)
T ss_pred EEEecccchHHHHHHhhcccCCCCE
Confidence 35899889999876 8999999994
No 59
>PRK11546 zraP zinc resistance protein; Provisional
Probab=29.88 E-value=39 Score=25.07 Aligned_cols=26 Identities=8% Similarity=-0.025 Sum_probs=16.3
Q ss_pred HHHHHHHHhcccccceEEEecCCCCcc
Q 039717 21 LIVLLFLRFHSTEATSTFTVGDTSGWT 47 (131)
Q Consensus 21 ~~~~~~~~~~~~a~a~~~~VG~~~gW~ 47 (131)
++|..++++++.+.|..+. |+..||-
T Consensus 12 ~ala~~~~~s~~a~A~~~~-G~~~G~~ 37 (143)
T PRK11546 12 MALSALAMGSGSAFAHHHW-GGGHGMW 37 (143)
T ss_pred HHHHHHHHhhhHHHHhhcc-CCCCCCC
Confidence 3444555556667676666 7777765
No 60
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=29.71 E-value=64 Score=20.35 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=9.7
Q ss_pred CeeeeCCEEEEE
Q 039717 57 KQFKAGDTLIFN 68 (131)
Q Consensus 57 ~~f~vGD~LvF~ 68 (131)
+...+||+++|+
T Consensus 2 ~~a~vGdiIefk 13 (57)
T PF09953_consen 2 KKAKVGDIIEFK 13 (57)
T ss_pred cccccCcEEEEc
Confidence 356899999996
No 61
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.65 E-value=35 Score=28.96 Aligned_cols=30 Identities=23% Similarity=0.547 Sum_probs=19.2
Q ss_pred eeeCCEEEEEecCCCceEEE--E---cCCCCCCCCCC
Q 039717 59 FKAGDTLIFNYDASIHNVAV--V---DGNNYQSCRAS 90 (131)
Q Consensus 59 f~vGD~LvF~y~~~~H~V~~--V---~~~~y~~C~~~ 90 (131)
.+.||+|+|.|+. |---+ . +...||.|..+
T Consensus 135 aq~gD~LvfHYSG--HGtr~~~~~gDe~dG~DE~I~P 169 (362)
T KOG1546|consen 135 AQPGDSLVFHYSG--HGTRQPDTNGDEVDGYDETIVP 169 (362)
T ss_pred CCCCCEEEEEecC--CCCcCCCCCCCCCCCCcceeec
Confidence 4789999999973 32211 2 23578887653
No 62
>COG5661 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=28.62 E-value=73 Score=25.00 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=17.8
Q ss_pred HHHHHHHHhcccccce--------EEEecCCCCcccc
Q 039717 21 LIVLLFLRFHSTEATS--------TFTVGDTSGWTYN 49 (131)
Q Consensus 21 ~~~~~~~~~~~~a~a~--------~~~VG~~~gW~~~ 49 (131)
|+.++.++.++.++|+ -|.+||..-|+.+
T Consensus 12 l~~~L~~~~a~~a~Ae~ivkk~ysYfSI~gkTaaDLd 48 (210)
T COG5661 12 LTALLGLLLAGPAEAETIVKKEYSYFSIGGKTAADLD 48 (210)
T ss_pred HHHHHHhccCCccccchhheeeeEEEEEcCccHHHHH
Confidence 3444444455555553 2679999999854
No 63
>PRK07217 replication factor A; Reviewed
Probab=28.00 E-value=53 Score=27.43 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=29.1
Q ss_pred EEecCCCCcccccccccC--CCeeeeCCEEEEEec--CCCceEEEEc
Q 039717 38 FTVGDTSGWTYNIQSWAN--GKQFKAGDTLIFNYD--ASIHNVAVVD 80 (131)
Q Consensus 38 ~~VG~~~gW~~~y~~Wa~--~~~f~vGD~LvF~y~--~~~H~V~~V~ 80 (131)
=++||+.| ++.++.|.. ...++.||++.|... .......+++
T Consensus 106 GllgDETG-~IkfT~W~~s~~~~leeGd~~rI~na~v~ey~G~~~ln 151 (311)
T PRK07217 106 GLLGDETG-TIKFTKWAKSDLPELEEGKSYLLKNVVTDEYQGRFSVK 151 (311)
T ss_pred EEEEcCCc-eEEEEEccCCCCCcccCCCEEEEEeEEEeeECCEEEEE
Confidence 35788877 567999995 356999999999763 3344444443
No 64
>COG4446 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.72 E-value=52 Score=24.16 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=20.2
Q ss_pred CCCeeeeCCEEEEEecCCCceEEEEc
Q 039717 55 NGKQFKAGDTLIFNYDASIHNVAVVD 80 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~~H~V~~V~ 80 (131)
.++-|.-=|-|+|+.+ ..|+|.+|.
T Consensus 88 ~Srlf~FVDDlEfyl~-~d~~vi~vR 112 (141)
T COG4446 88 TSRLFGFVDDLEFYLP-QDHNVIWVR 112 (141)
T ss_pred HHHHhhcccceEEecC-CCCceEEEe
Confidence 4567777789999995 679999994
No 65
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=27.57 E-value=1.2e+02 Score=22.92 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=13.1
Q ss_pred CCCeeeeCCEEEEEec
Q 039717 55 NGKQFKAGDTLIFNYD 70 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~ 70 (131)
...+.+.||.++|..+
T Consensus 47 ~~~~~~rGDiVvf~~P 62 (176)
T PRK13838 47 LDRPVAVGDLVFICPP 62 (176)
T ss_pred cCCCCCCCcEEEEECC
Confidence 3578899999999864
No 66
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=27.44 E-value=1.1e+02 Score=22.12 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=16.3
Q ss_pred CeeeeCCEEEEEecCCCceEEEE
Q 039717 57 KQFKAGDTLIFNYDASIHNVAVV 79 (131)
Q Consensus 57 ~~f~vGD~LvF~y~~~~H~V~~V 79 (131)
..+++||.|......++--.++|
T Consensus 71 ~~l~~GD~I~v~~~~g~~~~Y~V 93 (144)
T cd05829 71 GDLRKGDKVEVTRADGQTATFRV 93 (144)
T ss_pred hcCCCCCEEEEEECCCCEEEEEE
Confidence 56789999999995554344555
No 67
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=27.07 E-value=1.3e+02 Score=26.53 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=42.3
Q ss_pred CCCeeeeCCEEEEEecCCC----ceEE-----EEcCCCCCCC-CCCCCCccccCCCc---EEEcCC-CceEEEcCCCCCC
Q 039717 55 NGKQFKAGDTLIFNYDASI----HNVA-----VVDGNNYQSC-RASPTSKSFSSGKD---QIKLSK-GRNYFICSIPGHC 120 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~~----H~V~-----~V~~~~y~~C-~~~~~~~~~~~G~~---~v~L~~-G~~yFic~~~~HC 120 (131)
....++.||.|++...+.. +++. +......|.= ..++ .....|.+ .|+++. |++||-|-...|-
T Consensus 32 P~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq--~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~ 109 (541)
T TIGR03388 32 PTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQ--CAINPGETFIYNFVVDRPGTYFYHGHYGMQR 109 (541)
T ss_pred CeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCcccc--CCcCCCCEEEEEEEcCCCEEEEEEecchHHh
Confidence 3478899999999876431 2332 1111101110 0000 01122332 466665 9999999988888
Q ss_pred cCCCEEEEEe
Q 039717 121 EAGLKLAVDA 130 (131)
Q Consensus 121 ~~GmKl~I~V 130 (131)
..||.-.|.|
T Consensus 110 ~~Gl~G~liV 119 (541)
T TIGR03388 110 SAGLYGSLIV 119 (541)
T ss_pred hccceEEEEE
Confidence 8899877765
No 68
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=26.88 E-value=41 Score=24.42 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=17.7
Q ss_pred ccccCCCeeeeCCEEEEEecC
Q 039717 51 QSWANGKQFKAGDTLIFNYDA 71 (131)
Q Consensus 51 ~~Wa~~~~f~vGD~LvF~y~~ 71 (131)
..|++...+++||.|.|..-.
T Consensus 103 ~G~~~~~~i~vGd~v~~~~~~ 123 (126)
T COG1430 103 AGWAARLGIKVGDRVEFRPLG 123 (126)
T ss_pred CCchhhcCCccCCEEEecccC
Confidence 468899999999999997643
No 69
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=26.72 E-value=76 Score=22.22 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=16.9
Q ss_pred cCCCeeeeCCEEEEEecCCCc
Q 039717 54 ANGKQFKAGDTLIFNYDASIH 74 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~~~H 74 (131)
-+++..++||.|.+.|....-
T Consensus 44 KpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 44 KPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred ccccccCCCCEEEEEeCCcEE
Confidence 367899999999999975433
No 70
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=26.46 E-value=23 Score=20.64 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=21.2
Q ss_pred EecCCCCcccccccccCCCeeeeCCEEEEEecCC
Q 039717 39 TVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDAS 72 (131)
Q Consensus 39 ~VG~~~gW~~~y~~Wa~~~~f~vGD~LvF~y~~~ 72 (131)
.+|.+.+=++ ...|.....++.||.|++.+..+
T Consensus 2 kvg~s~~v~i-Pk~~~~~l~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 2 KVGNSGQVTI-PKEIREKLGLKPGDEVEIEVEGD 34 (47)
T ss_dssp EETTCSEEEE--HHHHHHTTSSTTTEEEEEEETT
T ss_pred EECCCceEEC-CHHHHHHcCCCCCCEEEEEEeCC
Confidence 3444433332 24566667788999999999754
No 71
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=26.09 E-value=54 Score=22.07 Aligned_cols=35 Identities=17% Similarity=0.488 Sum_probs=26.1
Q ss_pred eEEEecCC---CCccc---------ccccccCCCeeeeCCEEEEEec
Q 039717 36 STFTVGDT---SGWTY---------NIQSWANGKQFKAGDTLIFNYD 70 (131)
Q Consensus 36 ~~~~VG~~---~gW~~---------~y~~Wa~~~~f~vGD~LvF~y~ 70 (131)
.-|++|+. ..|+. +|..|.....+..|..++|||-
T Consensus 17 ~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv 63 (97)
T cd05810 17 SVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCL 63 (97)
T ss_pred eEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEE
Confidence 35888874 36872 3566888888888999999983
No 72
>PF11766 Candida_ALS_N: Cell-wall agglutinin N-terminal ligand-sugar binding ; InterPro: IPR024672 This N-terminal domain is likely to be the sugar or ligand binding domain of yeast alpha-agglutinin [] and agglutinin-like (ALS) proteins.; PDB: 2YLH_A 2Y7M_A 2Y7L_A 2Y7O_A 2Y7N_A.
Probab=25.72 E-value=24 Score=28.46 Aligned_cols=37 Identities=27% Similarity=0.674 Sum_probs=24.2
Q ss_pred CCCeeeeCCEE------EEEecCCCceEEE-EcCCCCCCCCCCC
Q 039717 55 NGKQFKAGDTL------IFNYDASIHNVAV-VDGNNYQSCRASP 91 (131)
Q Consensus 55 ~~~~f~vGD~L------vF~y~~~~H~V~~-V~~~~y~~C~~~~ 91 (131)
++...++||+. |||+...+-+|.. ++...|..|...+
T Consensus 5 dgs~v~~GDtFtL~MPcVfKf~t~~~sv~L~~~~~~yAtC~~~~ 48 (249)
T PF11766_consen 5 DGSNVSPGDTFTLTMPCVFKFTTSQTSVDLTAGGTTYATCTFQS 48 (249)
T ss_dssp ETTT--TT-EEEEEEETEEEESSS-SEEEEEETTEEEEEEEEE-
T ss_pred cccccCCCCEEEEecceEEEEecCCCEEEEEeCCEEEEEecccC
Confidence 45778899987 8888777777754 4778898888643
No 73
>PRK14699 replication factor A; Provisional
Probab=25.36 E-value=56 Score=28.73 Aligned_cols=30 Identities=37% Similarity=0.677 Sum_probs=23.7
Q ss_pred EEecCCCCcccccccccCCC------eeeeCCEEEEE
Q 039717 38 FTVGDTSGWTYNIQSWANGK------QFKAGDTLIFN 68 (131)
Q Consensus 38 ~~VG~~~gW~~~y~~Wa~~~------~f~vGD~LvF~ 68 (131)
.++||+.| ++.|+.|.... .+++||++..+
T Consensus 98 ~~iaDeTG-~ir~tlW~~~a~~~~~g~l~~GDvv~I~ 133 (484)
T PRK14699 98 LIVGDETG-KIKLTLWDNMADLIKAGKIKAGQTLQIS 133 (484)
T ss_pred EEEecCCC-eEEEEEecCccchhhhcCCCCCCEEEEc
Confidence 36777777 66799998765 39999999986
No 74
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=25.23 E-value=1.6e+02 Score=17.49 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=19.5
Q ss_pred CCcEEEcCC-CceEEEcCCCCCCcCCCEEEEE
Q 039717 99 GKDQIKLSK-GRNYFICSIPGHCEAGLKLAVD 129 (131)
Q Consensus 99 G~~~v~L~~-G~~yFic~~~~HC~~GmKl~I~ 129 (131)
++..+.|++ |...=|=..++ ++-||++.+.
T Consensus 5 ~~~aiVlT~dGeF~~ik~~~~-~~vG~eI~~~ 35 (56)
T PF12791_consen 5 KKYAIVLTPDGEFIKIKRKPG-MEVGQEIEFD 35 (56)
T ss_pred CCEEEEEcCCCcEEEEeCCCC-CcccCEEEEe
Confidence 455677776 76554444444 8888888765
No 75
>TIGR02594 conserved hypothetical protein TIGR02594. Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.
Probab=24.99 E-value=42 Score=24.06 Aligned_cols=17 Identities=12% Similarity=-0.046 Sum_probs=13.1
Q ss_pred eeeeCCEEEEEecCCCc
Q 039717 58 QFKAGDTLIFNYDASIH 74 (131)
Q Consensus 58 ~f~vGD~LvF~y~~~~H 74 (131)
.-++||.++|+.....|
T Consensus 73 ~p~~GDiv~f~~~~~~H 89 (129)
T TIGR02594 73 KPAYGCIAVKRRGGGGH 89 (129)
T ss_pred CCCccEEEEEECCCCCE
Confidence 35899999998865445
No 76
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=24.93 E-value=74 Score=20.68 Aligned_cols=35 Identities=20% Similarity=0.620 Sum_probs=25.4
Q ss_pred eEEEecCC---CCccc---------ccccccCCCeeeeCCEEEEEec
Q 039717 36 STFTVGDT---SGWTY---------NIQSWANGKQFKAGDTLIFNYD 70 (131)
Q Consensus 36 ~~~~VG~~---~gW~~---------~y~~Wa~~~~f~vGD~LvF~y~ 70 (131)
.-+++|+. .+|+. .+..|.....+..|+.++|+|-
T Consensus 16 ~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~ 62 (95)
T cd05808 16 NVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYI 62 (95)
T ss_pred EEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEE
Confidence 45788874 47872 2456877777888899999994
No 77
>PRK07218 replication factor A; Provisional
Probab=24.75 E-value=71 Score=27.67 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=0.0
Q ss_pred ccccceEEEecCCCCcccccccccCCCeeeeCCEEEEE
Q 039717 31 STEATSTFTVGDTSGWTYNIQSWANGKQFKAGDTLIFN 68 (131)
Q Consensus 31 ~~a~a~~~~VG~~~gW~~~y~~Wa~~~~f~vGD~LvF~ 68 (131)
+.....+-++||+.| ++.++.|. .+.+.+||.+.+.
T Consensus 90 ~~g~v~~~~igDeTG-~Ir~tlW~-~~~l~~Gdvv~I~ 125 (423)
T PRK07218 90 DDHVIYEGILADETG-TISYTAWK-DFGLSPGDTVTIG 125 (423)
T ss_pred CceEEEEEEEECCCC-eEEEEEEC-CCCCCCCCEEEEe
No 78
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=24.73 E-value=78 Score=19.78 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=11.9
Q ss_pred CCeeeeCCEEEEEecCCC-ceEEEE
Q 039717 56 GKQFKAGDTLIFNYDASI-HNVAVV 79 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~~~-H~V~~V 79 (131)
.-+|++||.+.+.=.++. |++...
T Consensus 3 ~Gpf~~GdrVQlTD~Kgr~~Ti~L~ 27 (54)
T PF14801_consen 3 RGPFRAGDRVQLTDPKGRKHTITLE 27 (54)
T ss_dssp --S--TT-EEEEEETT--EEEEE--
T ss_pred cCCCCCCCEEEEccCCCCeeeEEEC
Confidence 457999999999988776 444443
No 79
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=24.73 E-value=1.6e+02 Score=18.76 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=22.2
Q ss_pred cccCCCcEEEcCCCceEEEcCCC--CCCcCCCEEEEE
Q 039717 95 SFSSGKDQIKLSKGRNYFICSIP--GHCEAGLKLAVD 129 (131)
Q Consensus 95 ~~~~G~~~v~L~~G~~yFic~~~--~HC~~GmKl~I~ 129 (131)
..+....+++|+.|..|=.-..- +-=+.|||+.|.
T Consensus 11 ~id~~~~titLdDGksy~lp~ef~~~~L~~G~kV~V~ 47 (61)
T PF07076_consen 11 SIDPETMTITLDDGKSYKLPEEFDFDGLKPGMKVVVF 47 (61)
T ss_pred EEcCCceEEEecCCCEEECCCcccccccCCCCEEEEE
Confidence 34445567888887777544322 345778988875
No 80
>PRK06386 replication factor A; Reviewed
Probab=24.65 E-value=62 Score=27.44 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=25.3
Q ss_pred EEEecCCCCcccccccccCCCeeeeCCEEEEEe
Q 039717 37 TFTVGDTSGWTYNIQSWANGKQFKAGDTLIFNY 69 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~Wa~~~~f~vGD~LvF~y 69 (131)
.=++||+.| .+.++.|...-.++.||++.+..
T Consensus 40 ~gllgDeTG-~I~fT~W~~~~~l~~Gd~v~i~n 71 (358)
T PRK06386 40 YGIIGDETG-TVPFTAWEFPDAVKSGDVIEIKY 71 (358)
T ss_pred EEEEECCcc-eEEEEecCCcccCCCCCEEEEEe
Confidence 346888887 45788998767889999998865
No 81
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=24.42 E-value=59 Score=20.41 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.3
Q ss_pred ccccccCCCeeeeCCEEEEEec
Q 039717 49 NIQSWANGKQFKAGDTLIFNYD 70 (131)
Q Consensus 49 ~y~~Wa~~~~f~vGD~LvF~y~ 70 (131)
....+.+..+.++||.|+|...
T Consensus 27 ~~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 27 SITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEEecCCCcccCCCEEEEEEE
Confidence 3567889999999999998764
No 82
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=23.01 E-value=56 Score=23.84 Aligned_cols=21 Identities=10% Similarity=0.214 Sum_probs=14.0
Q ss_pred HHHHHHHhcccccceEEEecC
Q 039717 22 IVLLFLRFHSTEATSTFTVGD 42 (131)
Q Consensus 22 ~~~~~~~~~~~a~a~~~~VG~ 42 (131)
+++++++..+.+.|-.|+|--
T Consensus 14 ~~l~~~~~~~~a~AHa~l~~s 34 (127)
T COG2372 14 ALLMLALVTPQAFAHAYLVSS 34 (127)
T ss_pred HHHHHHhcCcchhheeeeecC
Confidence 444455667778888888753
No 83
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=22.94 E-value=74 Score=27.22 Aligned_cols=54 Identities=11% Similarity=0.247 Sum_probs=27.6
Q ss_pred ccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCccccCCCcEEEcCC
Q 039717 53 WANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSK 107 (131)
Q Consensus 53 Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~ 107 (131)
-+.+.+.-|||+..++++...-.-+.--.++|++-+ -.|......|.+++.+++
T Consensus 167 ~p~g~k~~vg~~~~~~~q~~~g~~~~~~~~~~~~~~-~~p~~~v~kg~~~~~~~~ 220 (375)
T PRK02654 167 LPGGTKLGVGESVKIQLQTTEGKPFSQLLAEYPNSK-LSPTWKVTKGEERVKVSE 220 (375)
T ss_pred cCCCCcccccceeEEEEecCCCCcHHHHHhcCCccc-cCceeEEecCceeEEECC
Confidence 356677788998888886432221110013444411 134444456666665543
No 84
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=22.44 E-value=65 Score=19.33 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=12.5
Q ss_pred cCCCeeeeCCEEEEEe
Q 039717 54 ANGKQFKAGDTLIFNY 69 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y 69 (131)
+++.+..+||.|.|.=
T Consensus 3 ~d~~~~~~Gd~v~Yti 18 (53)
T TIGR01451 3 VDKTVATIGDTITYTI 18 (53)
T ss_pred cCccccCCCCEEEEEE
Confidence 4567889999998754
No 85
>PF07154 DUF1392: Protein of unknown function (DUF1392); InterPro: IPR009824 This family consists of several hypothetical cyanobacterial proteins of around 150 residues in length, which seem to be specific to Anabaena species. The function of this family is unknown.
Probab=22.34 E-value=89 Score=23.42 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=14.7
Q ss_pred cCCCeeeeCCEEEEEec
Q 039717 54 ANGKQFKAGDTLIFNYD 70 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~ 70 (131)
-++..|+.||.++|.|.
T Consensus 83 v~kp~F~LGd~V~~~f~ 99 (150)
T PF07154_consen 83 VQKPAFRLGDRVEFRFY 99 (150)
T ss_pred ccCCceecCCEEEEEec
Confidence 46688999999999994
No 86
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=22.19 E-value=40 Score=23.52 Aligned_cols=74 Identities=14% Similarity=0.178 Sum_probs=40.4
Q ss_pred CCeeeeCCEEEEEecC---CCceEEEE----cCC-CCCCCCCCCCCccccCCCc---EEEcC--CCceEEEcCCCCCCcC
Q 039717 56 GKQFKAGDTLIFNYDA---SIHNVAVV----DGN-NYQSCRASPTSKSFSSGKD---QIKLS--KGRNYFICSIPGHCEA 122 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~---~~H~V~~V----~~~-~y~~C~~~~~~~~~~~G~~---~v~L~--~G~~yFic~~~~HC~~ 122 (131)
...++.||+|.+.+.+ ..+++..= +.. ..|. ....+......|.. .|+++ +|++||-|...+|=..
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG-~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~ 105 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDG-VPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVM 105 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSG-GTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCC-cccccceeEEeecceeeeEeeeccccceeEeeCCCchhcC
Confidence 4788999999998864 24555431 111 0111 00000011222332 45663 3999999998875447
Q ss_pred CCEEEEEe
Q 039717 123 GLKLAVDA 130 (131)
Q Consensus 123 GmKl~I~V 130 (131)
||--.+.|
T Consensus 106 GL~G~~iV 113 (117)
T PF07732_consen 106 GLYGAIIV 113 (117)
T ss_dssp TEEEEEEE
T ss_pred cCEEEEEE
Confidence 88666654
No 87
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=22.02 E-value=48 Score=24.34 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=13.4
Q ss_pred CCCcccccc---cccCCCeeeeCCEEEE--EecC
Q 039717 43 TSGWTYNIQ---SWANGKQFKAGDTLIF--NYDA 71 (131)
Q Consensus 43 ~~gW~~~y~---~Wa~~~~f~vGD~LvF--~y~~ 71 (131)
...|+++++ ......++..||+|.- .|++
T Consensus 70 ~~~~dfn~Q~~y~l~~~v~i~~GD~l~~~C~Ydn 103 (156)
T PF03712_consen 70 IPPYDFNWQEFYPLKEPVTIPPGDTLRTECTYDN 103 (156)
T ss_dssp E-TTS----S-EEEEEEEEE-TT-EEEEEEEEE-
T ss_pred cCCCCCccceeEECCCceEecCCCEEEEEEEEeC
Confidence 345665432 2234578899999976 5654
No 88
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=21.53 E-value=64 Score=21.43 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=11.9
Q ss_pred CeeeeCCEEEEEecCCCceEEEE
Q 039717 57 KQFKAGDTLIFNYDASIHNVAVV 79 (131)
Q Consensus 57 ~~f~vGD~LvF~y~~~~H~V~~V 79 (131)
.++++||+|.|..+.. ..+.++
T Consensus 41 ~~L~pGq~l~f~~d~~-g~L~~L 62 (85)
T PF04225_consen 41 TRLKPGQTLEFQLDED-GQLTAL 62 (85)
T ss_dssp GG--TT-EEEEEE-TT-S-EEEE
T ss_pred hhCCCCCEEEEEECCC-CCEEEE
Confidence 5789999999999753 344443
No 89
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=20.98 E-value=69 Score=24.80 Aligned_cols=33 Identities=18% Similarity=0.541 Sum_probs=21.2
Q ss_pred eEEEecCCCCccc-c---cccccCC----CeeeeCCEEEEE
Q 039717 36 STFTVGDTSGWTY-N---IQSWANG----KQFKAGDTLIFN 68 (131)
Q Consensus 36 ~~~~VG~~~gW~~-~---y~~Wa~~----~~f~vGD~LvF~ 68 (131)
..|-+-...||.+ . ..-|..+ --|++||.|.|.
T Consensus 162 ~IYp~~sPGGW~iIGrTp~~lfd~~~~~p~ll~~GD~VrF~ 202 (202)
T TIGR00370 162 GVYPISTPGGWQLIGKTPLALFDPQENPPTLLRAGDIVKFV 202 (202)
T ss_pred EEEccCCCCcceEeeecchhhhCCCCCCCcccCCCCEEEeC
Confidence 4566766789983 2 2223322 458999999984
No 90
>PRK11507 ribosome-associated protein; Provisional
Probab=20.96 E-value=56 Score=21.38 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=12.1
Q ss_pred CCCeeeeCCEEEEE
Q 039717 55 NGKQFKAGDTLIFN 68 (131)
Q Consensus 55 ~~~~f~vGD~LvF~ 68 (131)
.+++.++||.+.|.
T Consensus 49 RgkKl~~GD~V~~~ 62 (70)
T PRK11507 49 KRCKIVAGQTVSFA 62 (70)
T ss_pred cCCCCCCCCEEEEC
Confidence 67999999999884
No 91
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.95 E-value=1.1e+02 Score=23.50 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=18.6
Q ss_pred EcCC-CceEEEcCCCCCCcCC---CEEEEEe
Q 039717 104 KLSK-GRNYFICSIPGHCEAG---LKLAVDA 130 (131)
Q Consensus 104 ~L~~-G~~yFic~~~~HC~~G---mKl~I~V 130 (131)
+.++ |.++..|+. -|-.| |++.|.|
T Consensus 161 ~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v 189 (194)
T MTH00047 161 CPDRHGVFVGYCSE--LCGVGHSYMPIVIEV 189 (194)
T ss_pred EcCCCEEEEEEeeh--hhCcCcccCcEEEEE
Confidence 3344 999999986 56655 8888876
No 92
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=20.53 E-value=77 Score=21.21 Aligned_cols=13 Identities=0% Similarity=0.054 Sum_probs=6.6
Q ss_pred HHHhcccccceEE
Q 039717 26 FLRFHSTEATSTF 38 (131)
Q Consensus 26 ~~~~~~~a~a~~~ 38 (131)
+++.++.+.+.+|
T Consensus 18 ~~~~~~pA~A~dy 30 (82)
T PF12071_consen 18 LALAAAPAQARDY 30 (82)
T ss_pred HhccccchhhcCC
Confidence 3344555666553
No 93
>PLN02311 chalcone isomerase
Probab=20.35 E-value=1.3e+02 Score=24.55 Aligned_cols=26 Identities=4% Similarity=0.277 Sum_probs=20.1
Q ss_pred CCeeeeCCEEEEEecCCCceEEEEcC
Q 039717 56 GKQFKAGDTLIFNYDASIHNVAVVDG 81 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~~~H~V~~V~~ 81 (131)
+++|+.||++.|.|.++...++.+++
T Consensus 199 ~~~l~kGd~I~~~~~p~~~~~v~~s~ 224 (271)
T PLN02311 199 NRSLNKGTVIFLTWINPSKMLVCISS 224 (271)
T ss_pred CCCCCCCCEEEEEEeCCCceEEEEec
Confidence 47899999999999887555555553
Done!