Query 039717
Match_columns 131
No_of_seqs 135 out of 848
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:49:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cbp_A Cucumber basic protein; 100.0 4.9E-42 1.7E-46 237.1 6.0 96 36-131 1-96 (96)
2 1ws8_A Mavicyanin; oxidized fo 100.0 2.6E-41 9.1E-46 238.3 4.6 98 34-131 1-103 (109)
3 1jer_A Cucumber stellacyanin; 100.0 3.6E-40 1.2E-44 241.1 4.3 98 34-131 2-107 (138)
4 1x9u_A Umecyanin; cupredoxin, 100.0 2.7E-39 9.1E-44 230.3 5.8 96 36-131 2-104 (116)
5 1f56_A Plantacyanin; cupredoxi 100.0 6.6E-38 2.3E-42 214.6 7.0 91 36-131 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.2 1.7E-11 5.8E-16 87.5 7.6 94 33-130 14-138 (140)
7 1bxv_A Plastocyanin; copper pr 99.1 8.2E-11 2.8E-15 77.4 6.4 84 37-131 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.1 9.9E-11 3.4E-15 85.8 5.9 76 56-131 62-154 (154)
9 2aan_A Auracyanin A; cupredoxi 98.9 1.3E-08 4.3E-13 72.4 10.0 94 33-131 16-139 (139)
10 1pmy_A Pseudoazurin; electron 98.8 1.1E-08 3.8E-13 72.4 7.6 80 41-131 11-93 (123)
11 1paz_A Pseudoazurin precursor; 98.8 1.4E-08 4.7E-13 71.9 7.6 79 41-131 11-93 (123)
12 1iuz_A Plastocyanin; electron 98.8 1E-08 3.4E-13 68.8 6.1 89 37-131 3-98 (98)
13 2gim_A Plastocyanin; beta shee 98.8 5.5E-08 1.9E-12 65.5 9.5 89 37-131 5-105 (106)
14 1plc_A Plastocyanin; electron 98.8 3.2E-08 1.1E-12 66.1 8.3 89 37-131 2-99 (99)
15 1kdj_A Plastocyanin; electron 98.7 3.5E-08 1.2E-12 66.2 7.7 89 37-131 2-102 (102)
16 2plt_A Plastocyanin; electron 98.7 1.7E-08 5.8E-13 67.2 5.8 90 36-131 2-98 (98)
17 3erx_A Pseudoazurin; copper pr 98.7 2.2E-08 7.4E-13 71.0 5.8 69 54-130 20-92 (123)
18 3ef4_A Pseudoazurin, blue copp 98.7 4.1E-08 1.4E-12 69.8 7.2 80 40-130 10-93 (124)
19 1b3i_A PETE protein, protein ( 98.7 1.3E-07 4.3E-12 62.8 8.9 87 37-131 4-97 (97)
20 3tu6_A Pseudoazurin (blue copp 98.7 4.3E-08 1.5E-12 69.9 6.9 80 40-131 11-95 (127)
21 1byp_A Protein (plastocyanin); 98.7 9E-08 3.1E-12 63.8 7.8 89 37-131 2-99 (99)
22 1pcs_A Plastocyanin; electron 98.5 9E-07 3.1E-11 58.7 8.3 89 37-131 4-98 (98)
23 3c75_A Amicyanin; copper prote 98.1 6.6E-06 2.3E-10 58.3 6.1 67 54-131 59-132 (132)
24 3cvb_A Plastocyanin; cupredoxi 97.9 5E-05 1.7E-09 50.4 7.5 87 37-131 4-104 (105)
25 4hci_A Cupredoxin 1; structura 97.9 1.1E-05 3.8E-10 53.9 4.0 67 54-131 27-100 (100)
26 2ux6_A Pseudoazurin; type-1 co 97.8 3.1E-05 1.1E-09 54.3 5.9 78 41-131 11-91 (122)
27 3ay2_A Lipid modified azurin p 97.8 9.4E-05 3.2E-09 54.9 8.7 90 36-130 43-165 (167)
28 1cuo_A Protein (azurin ISO-2); 97.8 0.00017 5.9E-09 51.1 9.5 89 37-130 4-127 (129)
29 2ov0_A Amicyanin; beta-sandwic 97.7 6.9E-05 2.4E-09 50.6 5.8 82 34-131 17-105 (105)
30 1id2_A Amicyanin; beta barrel, 97.6 0.00011 3.9E-09 49.7 5.9 67 54-131 33-106 (106)
31 2iaa_C Azurin; quinoprotein, t 97.5 0.00057 1.9E-08 48.4 8.7 89 38-131 4-127 (128)
32 1nwp_A Azurin; electron transp 97.5 0.00043 1.5E-08 49.0 8.0 90 37-131 4-128 (128)
33 2ccw_A Azurin II, AZN-2; elect 97.4 0.0011 3.7E-08 46.9 9.1 90 37-131 4-128 (129)
34 1iko_P Ephrin-B2; greek KEY, g 97.4 7E-05 2.4E-09 56.3 2.2 71 60-130 27-138 (178)
35 3czu_B Ephrin-A1; ATP-binding, 96.9 0.0011 3.7E-08 50.0 4.5 95 30-131 24-159 (182)
36 2x11_B Ephrin-A5; receptor-sig 96.5 0.0018 6.1E-08 48.6 3.2 56 32-91 28-96 (177)
37 3d12_B Ephrin-B3; beta propell 96.0 0.005 1.7E-07 44.6 3.6 74 58-131 23-140 (141)
38 1iby_A Nitrosocyanin; RED copp 95.8 0.014 4.9E-07 39.1 4.9 66 54-130 37-110 (112)
39 2cua_A Protein (CUA); CUA cent 95.5 0.078 2.7E-06 37.4 8.0 66 54-130 59-133 (135)
40 2vsm_B Ephrin-B2; developmenta 95.3 0.0045 1.5E-07 44.7 1.0 73 59-131 25-138 (140)
41 1shx_A Ephrin-A5; ephrin signa 94.9 0.023 7.7E-07 41.0 3.6 72 57-131 23-132 (138)
42 2wo3_B Ephrin-A2; transferase- 94.3 0.037 1.3E-06 40.7 3.6 35 57-91 32-77 (157)
43 3fsa_A Azurin; copper, cupredo 93.5 0.92 3.2E-05 31.8 9.6 84 40-131 7-125 (125)
44 2dv6_A Nitrite reductase; elec 91.2 0.29 1E-05 39.9 5.3 70 54-130 54-130 (447)
45 1fwx_A Nitrous oxide reductase 90.0 0.62 2.1E-05 40.5 6.5 66 54-130 512-590 (595)
46 3hei_B Ephrin-A1; EPH receptor 89.8 0.24 8.4E-06 35.2 3.2 35 57-91 22-67 (132)
47 3s8f_B Cytochrome C oxidase su 87.9 2.9 9.8E-05 30.6 8.0 66 55-130 93-166 (168)
48 3sbq_A Nitrous-oxide reductase 84.4 2.1 7.3E-05 37.5 6.5 65 54-130 557-635 (638)
49 3l6w_A Hemocyanin 1; cupredoxi 84.1 1 3.5E-05 38.4 4.3 75 54-130 410-490 (491)
50 1yel_A AT1G16640; CESG, protei 82.3 0.41 1.4E-05 31.8 1.0 18 55-72 74-91 (104)
51 4i1k_A B3 domain-containing tr 80.6 0.68 2.3E-05 33.0 1.7 25 55-79 113-137 (146)
52 3iuw_A Activating signal coint 72.3 1.6 5.6E-05 28.6 1.6 16 57-72 36-52 (83)
53 2k75_A Uncharacterized protein 67.4 3.2 0.00011 27.7 2.3 29 37-68 41-69 (106)
54 1oe1_A Dissimilatory copper-co 56.8 14 0.00048 28.7 4.6 72 56-130 66-150 (336)
55 2l55_A SILB,silver efflux prot 56.0 7.2 0.00025 25.0 2.3 29 43-71 27-60 (82)
56 2kbn_A Conserved protein; nucl 54.5 7 0.00024 26.0 2.2 32 36-68 37-70 (109)
57 1wid_A DNA-binding protein RAV 53.0 4.7 0.00016 27.8 1.1 16 56-71 89-104 (130)
58 1kbv_A ANIA, major outer membr 52.8 13 0.00043 29.1 3.8 73 55-130 70-154 (327)
59 1mzy_A Copper-containing nitri 51.6 16 0.00056 28.3 4.2 72 56-130 65-150 (333)
60 2hzs_I RNA polymerase II media 51.3 0.15 5.2E-06 26.2 -5.0 20 55-74 3-22 (27)
61 2z0t_A Putative uncharacterize 49.0 5.5 0.00019 27.1 1.0 13 55-67 30-42 (109)
62 2zoo_A Probable nitrite reduct 48.1 9.7 0.00033 30.8 2.5 73 55-130 60-144 (442)
63 1wjj_A Hypothetical protein F2 48.1 6.5 0.00022 28.0 1.3 33 36-69 64-97 (145)
64 3e0e_A Replication protein A; 44.3 8.6 0.00029 25.0 1.3 30 37-67 41-72 (97)
65 2vb2_X Copper protein, cation 44.1 10 0.00035 24.6 1.6 22 50-71 53-74 (88)
66 4he6_A Peptidase family U32; u 43.3 17 0.00057 23.1 2.6 18 55-72 26-43 (89)
67 3gdc_A Multicopper oxidase; be 39.7 27 0.00091 26.7 3.7 82 45-130 182-286 (288)
68 2qcp_X Cation efflux system pr 39.7 13 0.00045 23.5 1.6 19 53-71 48-66 (80)
69 1xne_A Hypothetical protein PF 38.3 8.1 0.00028 26.4 0.4 13 56-68 32-44 (113)
70 2hd9_A UPF0310 protein PH1033; 37.0 11 0.00037 26.6 0.9 42 45-86 20-73 (145)
71 4doo_A Chalcone-flavanone isom 32.3 34 0.0012 25.1 3.1 29 51-79 132-160 (205)
72 4doi_A Chalcone--flavonone iso 30.4 52 0.0018 25.3 3.9 26 55-80 151-176 (246)
73 2p5d_A UPF0310 protein mjecl36 29.8 15 0.00052 25.8 0.7 41 46-86 25-74 (147)
74 3gdc_A Multicopper oxidase; be 27.8 1.1E+02 0.0039 23.1 5.5 74 56-130 67-152 (288)
75 2bw4_A Copper-containing nitri 27.6 68 0.0023 24.7 4.3 72 56-130 72-156 (340)
76 2l8d_A Lamin-B receptor; DNA b 27.2 59 0.002 20.2 3.0 46 55-105 6-53 (66)
77 3dm3_A Replication factor A; p 27.0 24 0.00082 23.3 1.3 30 37-67 44-75 (105)
78 2z0b_A GDE5, KIAA1434, putativ 26.4 30 0.001 23.7 1.7 35 36-70 24-74 (131)
79 4dny_A Metalloprotease STCE; m 25.9 28 0.00095 24.4 1.5 18 61-78 77-94 (126)
80 1ed7_A Chitinase A1, (CHBD-CHI 24.7 21 0.00071 20.1 0.6 16 52-67 1-16 (45)
81 1o7i_A SSB, SSO2364, single st 23.7 30 0.001 23.0 1.3 31 37-68 41-72 (119)
82 4dok_A Similarity to chalcone- 23.3 73 0.0025 23.6 3.5 20 56-75 135-154 (208)
83 1fft_B Ubiquinol oxidase; elec 22.0 1.8E+02 0.0061 23.0 5.7 83 36-130 128-224 (315)
84 2y7l_A NT_ALS9-2, agglutinin-l 21.0 32 0.0011 27.5 1.2 35 55-89 41-82 (312)
85 1sdd_A Coagulation factor V; c 21.0 16 0.00055 28.2 -0.6 28 103-130 270-298 (306)
86 2k50_A Replication factor A re 20.6 39 0.0013 22.0 1.4 32 37-69 46-81 (115)
87 2dig_A Lamin-B receptor; tudor 20.2 88 0.003 19.5 2.8 46 55-105 9-56 (68)
No 1
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=4.9e-42 Score=237.13 Aligned_cols=96 Identities=50% Similarity=1.108 Sum_probs=92.2
Q ss_pred eEEEecCCCCcccccccccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCccccCCCcEEEcCCCceEEEcC
Q 039717 36 STFTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSKGRNYFICS 115 (131)
Q Consensus 36 ~~~~VG~~~gW~~~y~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~G~~yFic~ 115 (131)
++|+|||+.||+++|+.|+++++|++||+|+|+|.+++|+|+||++++|+.|+.++|+..+++|+++|+|++|++||||+
T Consensus 1 ~~~~VG~~~GW~~~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~~g~~yFic~ 80 (96)
T 2cbp_A 1 AVYVVGGSGGWTFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKLPKGQSYFICN 80 (96)
T ss_dssp CEEETTGGGCSCSSCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEECCSEEEEEECC
T ss_pred CEEEECCcCCCccChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEecCCCEEEEcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999994499999999
Q ss_pred CCCCCcCCCEEEEEeC
Q 039717 116 IPGHCEAGLKLAVDAS 131 (131)
Q Consensus 116 ~~~HC~~GmKl~I~V~ 131 (131)
+++||++||||+|+|+
T Consensus 81 ~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 81 FPGHCQSGMKIAVNAL 96 (96)
T ss_dssp STTTGGGTCEEEEEEC
T ss_pred CCCccccCCEEEEEEC
Confidence 9999999999999996
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=2.6e-41 Score=238.33 Aligned_cols=98 Identities=41% Similarity=0.920 Sum_probs=93.1
Q ss_pred cceEEEecCCCCccc----ccccccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCccccCCCcEEEcCC-C
Q 039717 34 ATSTFTVGDTSGWTY----NIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSK-G 108 (131)
Q Consensus 34 ~a~~~~VG~~~gW~~----~y~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~-G 108 (131)
+|++|+|||+.||++ +|+.|+++++|++||+|+|+|.++.|+|+||++++|+.|+.++|+..+++|+++|+|++ |
T Consensus 1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G 80 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPG 80 (109)
T ss_dssp CCCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSE
T ss_pred CCcEEEeCCCCCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCCc
Confidence 367999999999985 59999999999999999999999999999999999999999999999999999999975 9
Q ss_pred ceEEEcCCCCCCcCCCEEEEEeC
Q 039717 109 RNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 109 ~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
++||||++++||++||||+|+|.
T Consensus 81 ~~yFic~~~gHC~~GmKl~I~V~ 103 (109)
T 1ws8_A 81 TFYFLCGIPGHCQLGQKVEIKVD 103 (109)
T ss_dssp EEEEECCSTTTTTTTCEEEEEEC
T ss_pred CEEEECCCCCcccCCCEEEEEEc
Confidence 99999999999999999999984
No 3
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=3.6e-40 Score=241.15 Aligned_cols=98 Identities=31% Similarity=0.721 Sum_probs=93.5
Q ss_pred cceEEEecCCCCcccc-----cccccCCCeeeeCCEEEEEecCCCceEEEE-cCCCCCCCCCCCCCccccCCCcEEEc-C
Q 039717 34 ATSTFTVGDTSGWTYN-----IQSWANGKQFKAGDTLIFNYDASIHNVAVV-DGNNYQSCRASPTSKSFSSGKDQIKL-S 106 (131)
Q Consensus 34 ~a~~~~VG~~~gW~~~-----y~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V-~~~~y~~C~~~~~~~~~~~G~~~v~L-~ 106 (131)
+|++|+|||+.||+++ |+.|+++++|++||+|+|+|.++.|+|+|| ++++|+.|+.++++..+++|+++|+| +
T Consensus 2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~~ 81 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLD 81 (138)
T ss_dssp CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECC
T ss_pred CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEecc
Confidence 5789999999999964 999999999999999999999999999999 99999999999999999999999999 7
Q ss_pred C-CceEEEcCCCCCCcCCCEEEEEeC
Q 039717 107 K-GRNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 107 ~-G~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
+ |++||||++++||++||||+|+|.
T Consensus 82 ~~G~~YFicg~~gHC~~GmKl~I~V~ 107 (138)
T 1jer_A 82 ELGMHYFVCTVGTHCSNGQKLSINVV 107 (138)
T ss_dssp SSEEEEEECCSTTTGGGTCEEEEEEE
T ss_pred CCcCEEEEcCCCCccccCCEEEEEEc
Confidence 7 999999999999999999999983
No 4
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=2.7e-39 Score=230.35 Aligned_cols=96 Identities=31% Similarity=0.723 Sum_probs=91.1
Q ss_pred eEEEecCCCCccc-----ccccccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCccccCCCcEEEcCC-Cc
Q 039717 36 STFTVGDTSGWTY-----NIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSK-GR 109 (131)
Q Consensus 36 ~~~~VG~~~gW~~-----~y~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~-G~ 109 (131)
++|+|||+.||++ +|+.|+++++|++||+|+|+|.++.|+|+||++++|++|+.++++..+++|+++|+|++ |+
T Consensus 2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~ 81 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGP 81 (116)
T ss_dssp CEEETTGGGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCEE
T ss_pred eEEEECCcCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCCC
Confidence 4799999999984 59999999999999999999999999999999999999999999999999999999976 99
Q ss_pred eEEEcCCCCCCcCCCEEEE-EeC
Q 039717 110 NYFICSIPGHCEAGLKLAV-DAS 131 (131)
Q Consensus 110 ~yFic~~~~HC~~GmKl~I-~V~ 131 (131)
+||||++++||++||||+| +|.
T Consensus 82 ~yFic~~~~HC~~Gmkl~In~V~ 104 (116)
T 1x9u_A 82 QYYICTVGDHCRVGQKLSINVVG 104 (116)
T ss_dssp EEEECCSTTTTTTTCEEEEEEEC
T ss_pred EEEECCCCCccccCCEEEEEEEC
Confidence 9999999999999999999 763
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=6.6e-38 Score=214.60 Aligned_cols=91 Identities=48% Similarity=1.041 Sum_probs=87.1
Q ss_pred eEEEecCCCCcccccccccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCccccCCCcEEEcCCCceEEEcC
Q 039717 36 STFTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFSSGKDQIKLSKGRNYFICS 115 (131)
Q Consensus 36 ~~~~VG~~~gW~~~y~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~G~~yFic~ 115 (131)
++|+| ||+++ +.|+++++|++||+|+|+|.+++|+|+||++++|+.|+.++|+..+++|+++|+|++|++||||+
T Consensus 1 ~~y~V----gW~~~-~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~~g~~yFic~ 75 (91)
T 1f56_A 1 AVYNI----GWSFN-VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTRGQNYFICS 75 (91)
T ss_dssp CEEEE----ECSSS-CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECCSEEEEEECC
T ss_pred CEEEE----eCCCC-CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeCCCCeEEEcC
Confidence 47899 89988 99999999999999999999999999999999999999999999999999999997799999999
Q ss_pred CCCCCcCCCEEEEEeC
Q 039717 116 IPGHCEAGLKLAVDAS 131 (131)
Q Consensus 116 ~~~HC~~GmKl~I~V~ 131 (131)
+++||++||||+|+|+
T Consensus 76 ~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 76 FPGHCGGGMKIAINAK 91 (91)
T ss_dssp STTTTTTTCEEEEEEC
T ss_pred CCCccccCCEEEEEEC
Confidence 9999999999999985
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.25 E-value=1.7e-11 Score=87.46 Aligned_cols=94 Identities=18% Similarity=0.389 Sum_probs=62.6
Q ss_pred ccceEEEecCC-CCcccccccccCCCeeeeCCEEEEEecC-----CCceEEEEcCC-CCCC--------------C---C
Q 039717 33 EATSTFTVGDT-SGWTYNIQSWANGKQFKAGDTLIFNYDA-----SIHNVAVVDGN-NYQS--------------C---R 88 (131)
Q Consensus 33 a~a~~~~VG~~-~gW~~~y~~Wa~~~~f~vGD~LvF~y~~-----~~H~V~~V~~~-~y~~--------------C---~ 88 (131)
+.+.++.|+-. .+|.|+ ++..++++||++.|.+.+ ..|++...+.. ++.. . +
T Consensus 14 ~~~~~v~V~~~~~~~~F~----P~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFA----QTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPD 89 (140)
T ss_dssp CCSEEEEEEBCSSSSSBS----CSEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTT
T ss_pred CCCEEEEEEEeCCCceEe----CCeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccc
Confidence 34467777653 357776 577899999999998865 47999887422 1110 0 0
Q ss_pred CCCC---CccccCC---CcEEEcC-CCceEEEcCCCCCCcCCCEEEEEe
Q 039717 89 ASPT---SKSFSSG---KDQIKLS-KGRNYFICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 89 ~~~~---~~~~~~G---~~~v~L~-~G~~yFic~~~~HC~~GmKl~I~V 130 (131)
..+. ......| ..+|+++ +|.|||+|++++||+.|||..|+|
T Consensus 90 ~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V 138 (140)
T 1qhq_A 90 TPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTV 138 (140)
T ss_dssp CTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEE
T ss_pred cccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEE
Confidence 0000 0112233 3357775 499999999999999999999987
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.14 E-value=8.2e-11 Score=77.35 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=59.3
Q ss_pred EEEecCC-CCcccccccccCCCeeeeCCEEEEEecC-CCceEEEEcCCCCCCCCCCCCCccccCC-CcEEEcCC-CceEE
Q 039717 37 TFTVGDT-SGWTYNIQSWANGKQFKAGDTLIFNYDA-SIHNVAVVDGNNYQSCRASPTSKSFSSG-KDQIKLSK-GRNYF 112 (131)
Q Consensus 37 ~~~VG~~-~gW~~~y~~Wa~~~~f~vGD~LvF~y~~-~~H~V~~V~~~~y~~C~~~~~~~~~~~G-~~~v~L~~-G~~yF 112 (131)
+..+|++ .+|.+. ++..++++||+|.|.+.. ..|+|...+...+. ........| ..++++++ |+++|
T Consensus 4 ~v~~~~~~~~~~f~----P~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~~~G~y~~ 74 (91)
T 1bxv_A 4 AIKMGADNGMLAFE----PSTIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFSEPGTYTY 74 (91)
T ss_dssp EEEESCTTSCSSEE----SSEEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECCSCEEEEE
T ss_pred EEEEecCCCccEEe----CCEEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeCCCEEEEE
Confidence 4556764 557665 467899999999999874 68999875432221 011123334 34677765 99999
Q ss_pred EcCCCCCCcCCCEEEEEeC
Q 039717 113 ICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 113 ic~~~~HC~~GmKl~I~V~ 131 (131)
+|+ .||..||+..|.|.
T Consensus 75 ~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 75 YCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp ECT--TTGGGTCEEEEEEC
T ss_pred EeC--CCccCCCEEEEEEC
Confidence 999 79999999999884
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.10 E-value=9.9e-11 Score=85.79 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=56.4
Q ss_pred CCeeeeCCEEEEEecCC----CceEEEEc-CCCCCCCCCCCCCc-------cccCC---Cc--EEEcCCCceEEEcCCCC
Q 039717 56 GKQFKAGDTLIFNYDAS----IHNVAVVD-GNNYQSCRASPTSK-------SFSSG---KD--QIKLSKGRNYFICSIPG 118 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~~----~H~V~~V~-~~~y~~C~~~~~~~-------~~~~G---~~--~v~L~~G~~yFic~~~~ 118 (131)
..++++||+|+|++.+. .|++..++ ...|+.|....++. ....| .. +|++.+|.+||+|+.++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~~pGtY~y~C~~~g 141 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHPTAGTYYYVCQIPG 141 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECCCSEEEEEECCSTT
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEECCceEEEECCCCC
Confidence 47889999999999642 69999984 45787776543321 12233 33 34563499999999999
Q ss_pred CCcCCCEEEEEeC
Q 039717 119 HCEAGLKLAVDAS 131 (131)
Q Consensus 119 HC~~GmKl~I~V~ 131 (131)
||+.||+..|.|.
T Consensus 142 H~~~GM~G~IiV~ 154 (154)
T 2cal_A 142 MAATGMFGKIVVK 154 (154)
T ss_dssp TGGGTCEEEEEEC
T ss_pred HHHCCCEEEEEEC
Confidence 9999999999884
No 9
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.90 E-value=1.3e-08 Score=72.41 Aligned_cols=94 Identities=20% Similarity=0.405 Sum_probs=63.0
Q ss_pred ccceEEEecC-CCCcccccccccCCCeeeeCCEEEEEecCC----CceEEEEcCC------------------CCCCCCC
Q 039717 33 EATSTFTVGD-TSGWTYNIQSWANGKQFKAGDTLIFNYDAS----IHNVAVVDGN------------------NYQSCRA 89 (131)
Q Consensus 33 a~a~~~~VG~-~~gW~~~y~~Wa~~~~f~vGD~LvF~y~~~----~H~V~~V~~~------------------~y~~C~~ 89 (131)
++..+..||. ..++.|+ ++..++++||++.|.+.+. .|++...+.. +|..+..
T Consensus 16 ~~~~~V~v~~~~~~~~F~----p~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 91 (139)
T 2aan_A 16 SGPVTIEIGSKGEELAFD----KTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADK 91 (139)
T ss_dssp -CCEEEEEEBCTTSSSBS----CSEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCC
T ss_pred CcCEEEEEEecCCccEEc----CCeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCccc
Confidence 3445677742 2456655 4678999999999888543 7999887532 5666653
Q ss_pred CCC---CccccCCC-cEEEc--C-CCceEEEcCCCCCCcCCCEEEEEeC
Q 039717 90 SPT---SKSFSSGK-DQIKL--S-KGRNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 90 ~~~---~~~~~~G~-~~v~L--~-~G~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
.+. ......|. .++++ + +|.++|+|.+++||+ ||+-.|.|.
T Consensus 92 ~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 92 SNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp TTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 221 11233443 34544 3 599999999999999 999999874
No 10
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.83 E-value=1.1e-08 Score=72.36 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=55.2
Q ss_pred cCCCCcccccccccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCcc-ccCCC-cEEEcCC-CceEEEcCCC
Q 039717 41 GDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKS-FSSGK-DQIKLSK-GRNYFICSIP 117 (131)
Q Consensus 41 G~~~gW~~~y~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~-~~~G~-~~v~L~~-G~~yFic~~~ 117 (131)
|++.+..|. ++..++++||+|.|.+....|+|...+ .|.+...... ...|. .++++++ |.++|+|+
T Consensus 11 g~~g~~~F~----P~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~-- 79 (123)
T 1pmy_A 11 GPGGMMVFD----PALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA-- 79 (123)
T ss_dssp ETTEEEEEE----SSEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS--
T ss_pred cCCCCceEe----CCEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC--
Confidence 544445554 477899999999999987789998642 2222111111 11233 3678865 99999998
Q ss_pred CCCcCCCEEEEEeC
Q 039717 118 GHCEAGLKLAVDAS 131 (131)
Q Consensus 118 ~HC~~GmKl~I~V~ 131 (131)
.||..||+..|+|.
T Consensus 80 ~H~~~gM~G~I~V~ 93 (123)
T 1pmy_A 80 PHYMMGMVALVVVG 93 (123)
T ss_dssp TTTTTTCEEEEEES
T ss_pred CccccCCEEEEEEc
Confidence 49999999999883
No 11
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.81 E-value=1.4e-08 Score=71.86 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=54.9
Q ss_pred cCCCCcccccccccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCcccc--CCC-cEEEcCC-CceEEEcCC
Q 039717 41 GDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFS--SGK-DQIKLSK-GRNYFICSI 116 (131)
Q Consensus 41 G~~~gW~~~y~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~--~G~-~~v~L~~-G~~yFic~~ 116 (131)
|++.+..|. ++..++++||+|.|.+....|+|.... .|.+.... .+. .|. .++++++ |.++|+|+
T Consensus 11 g~~g~~~F~----P~~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~-~~~~~pG~t~~~tF~~~G~y~y~C~- 79 (123)
T 1paz_A 11 GAEGAMVFE----PAYIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAE-KFKSKINENYVLTVTQPGAYLVKCT- 79 (123)
T ss_dssp ETTEEEEEE----SSEEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCC-CCBCCTTCCEEEECCSCEEEEEECT-
T ss_pred cCCCCceEe----CCEEEECCCCEEEEEECCCCeEEEEec-----ccCCCCcc-ceecCCCCEEEEEeCCCEEEEEEeC-
Confidence 554445554 577899999999999987789998631 22221111 122 232 3678865 99999998
Q ss_pred CCCCcCCCEEEEEeC
Q 039717 117 PGHCEAGLKLAVDAS 131 (131)
Q Consensus 117 ~~HC~~GmKl~I~V~ 131 (131)
.||..||+..|+|.
T Consensus 80 -~H~~~gM~G~I~V~ 93 (123)
T 1paz_A 80 -PHYAMGMIALIAVG 93 (123)
T ss_dssp -TTGGGTCEEEEEES
T ss_pred -CcccCCCEEEEEEc
Confidence 59999999999883
No 12
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.79 E-value=1e-08 Score=68.82 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=58.1
Q ss_pred EEEecC-CCCcccccccccCCCeeeeCCEEEEEecC-CCceEEEEcC---CCCCCCCCCCCCccccCCCc-EEEcCC-Cc
Q 039717 37 TFTVGD-TSGWTYNIQSWANGKQFKAGDTLIFNYDA-SIHNVAVVDG---NNYQSCRASPTSKSFSSGKD-QIKLSK-GR 109 (131)
Q Consensus 37 ~~~VG~-~~gW~~~y~~Wa~~~~f~vGD~LvF~y~~-~~H~V~~V~~---~~y~~C~~~~~~~~~~~G~~-~v~L~~-G~ 109 (131)
+..+|+ +.++.|. ++..++++||+|.|.... ..|+|...+. ++++.+..+........|.+ ++++++ |.
T Consensus 3 ~V~m~~~~~~~~F~----P~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf~~~G~ 78 (98)
T 1iuz_A 3 IVKLGGDDGSLAFV----PSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLSTPGV 78 (98)
T ss_dssp EEEESCTTSCCSEE----SSEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEECCSCEE
T ss_pred EEEEecCCCCcEEe----CCEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEEcCCCEE
Confidence 445554 3456665 477899999999998865 4899986531 11221111000012334443 677765 99
Q ss_pred eEEEcCCCCCCcCCCEEEEEeC
Q 039717 110 NYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 110 ~yFic~~~~HC~~GmKl~I~V~ 131 (131)
++|+|+. ||+.||+..|.|.
T Consensus 79 y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 79 YGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp EEEECTT--TGGGTCEEEEEEC
T ss_pred EEEEchh--hccCCCEEEEEEC
Confidence 9999985 9999999999884
No 13
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.78 E-value=5.5e-08 Score=65.51 Aligned_cols=89 Identities=22% Similarity=0.297 Sum_probs=57.7
Q ss_pred EEEecCC-CCcccccccccCCCeeeeCCEEEEEecC-CCceEEEEcCCCCC-----CCCCCCCCccccCCC-cEEEc---
Q 039717 37 TFTVGDT-SGWTYNIQSWANGKQFKAGDTLIFNYDA-SIHNVAVVDGNNYQ-----SCRASPTSKSFSSGK-DQIKL--- 105 (131)
Q Consensus 37 ~~~VG~~-~gW~~~y~~Wa~~~~f~vGD~LvF~y~~-~~H~V~~V~~~~y~-----~C~~~~~~~~~~~G~-~~v~L--- 105 (131)
+..+|.+ .++.|. ++..++++||++.|.+.. ..|++...+....+ .............|. .++++
T Consensus 5 ~V~~~~~~~~~~F~----P~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~~~~~~pG~~~~~~f~~~ 80 (106)
T 2gim_A 5 TVKLGSDKGLLVFE----PAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHKQLLMSPGQSTSTTFPAD 80 (106)
T ss_dssp EEEESCTTCCSSEE----SSEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBCSCCCSTTCEEEEECCTT
T ss_pred EEEEEecCCcceEc----CCEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccccceeeCCCCEEEEEEecC
Confidence 4566653 567765 467899999999999765 57999864321110 000000011123343 46777
Q ss_pred CC-CceEEEcCCCCCCcCCCEEEEEeC
Q 039717 106 SK-GRNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 106 ~~-G~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
++ |.++|+|. .||+.||+..|.|.
T Consensus 81 ~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 81 APAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp CCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 44 99999999 89999999999884
No 14
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.78 E-value=3.2e-08 Score=66.10 Aligned_cols=89 Identities=20% Similarity=0.360 Sum_probs=58.0
Q ss_pred EEEecCC-CCcccccccccCCCeeeeCCEEEEEecCC-CceEEEEcCC---CCCCCCCC--CCCccccCCC-cEEEcCC-
Q 039717 37 TFTVGDT-SGWTYNIQSWANGKQFKAGDTLIFNYDAS-IHNVAVVDGN---NYQSCRAS--PTSKSFSSGK-DQIKLSK- 107 (131)
Q Consensus 37 ~~~VG~~-~gW~~~y~~Wa~~~~f~vGD~LvF~y~~~-~H~V~~V~~~---~y~~C~~~--~~~~~~~~G~-~~v~L~~- 107 (131)
+..+|++ .+..+. ++..++++||+|.|..... .|++...+.. +.+.+... ........|. .++++++
T Consensus 2 ~v~m~~~~~~~~F~----P~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~tf~~~ 77 (99)
T 1plc_A 2 DVLLGADDGSLAFV----PSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNK 77 (99)
T ss_dssp EEEESCTTCCSCEE----SSEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEEECCSC
T ss_pred EEEEecCCCcceEe----CCEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEEEEECCC
Confidence 3456654 455554 4678999999999988654 8999875421 11111100 0001223343 3677765
Q ss_pred CceEEEcCCCCCCcCCCEEEEEeC
Q 039717 108 GRNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 108 G~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
|.++|+|. +||+.||+..|.|.
T Consensus 78 G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 78 GEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp EEEEEECG--GGTTTTCEEEEEEC
T ss_pred ceEEEEcC--CCcccCCEEEEEEC
Confidence 99999999 79999999999884
No 15
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.75 E-value=3.5e-08 Score=66.17 Aligned_cols=89 Identities=19% Similarity=0.249 Sum_probs=58.3
Q ss_pred EEEecCC-CCcccccccccCCCeeeeCCEEEEEecC-CCceEEEEcCCCCC----CCCCCC----CCccccCCC-cEEEc
Q 039717 37 TFTVGDT-SGWTYNIQSWANGKQFKAGDTLIFNYDA-SIHNVAVVDGNNYQ----SCRASP----TSKSFSSGK-DQIKL 105 (131)
Q Consensus 37 ~~~VG~~-~gW~~~y~~Wa~~~~f~vGD~LvF~y~~-~~H~V~~V~~~~y~----~C~~~~----~~~~~~~G~-~~v~L 105 (131)
+..+|++ .++.+. ++..++++||++.|.... ..|++...+...++ .++... .......|. .++++
T Consensus 2 ~V~~g~~~~~~~F~----P~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf 77 (102)
T 1kdj_A 2 KVEVGDEVGNFKFY----PDSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKV 77 (102)
T ss_dssp EEEESCTTCCCCEE----SSEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECC
T ss_pred EEEEecCCCccEEe----CCEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCCEEEEEe
Confidence 3556764 455554 467899999999998765 47999875433321 111000 011233343 36677
Q ss_pred CC-CceEEEcCCCCCCcCCCEEEEEeC
Q 039717 106 SK-GRNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 106 ~~-G~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
++ |.++|+|. +||+.||+..|.|.
T Consensus 78 ~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 78 STPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp CSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred CCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 54 99999999 89999999999884
No 16
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.74 E-value=1.7e-08 Score=67.16 Aligned_cols=90 Identities=20% Similarity=0.303 Sum_probs=58.2
Q ss_pred eEEEecCC-CCcccccccccCCCeeeeCCEEEEEecCC-CceEEEEcC---CCCCCCCCCCCCccccCCC-cEEEcCC-C
Q 039717 36 STFTVGDT-SGWTYNIQSWANGKQFKAGDTLIFNYDAS-IHNVAVVDG---NNYQSCRASPTSKSFSSGK-DQIKLSK-G 108 (131)
Q Consensus 36 ~~~~VG~~-~gW~~~y~~Wa~~~~f~vGD~LvF~y~~~-~H~V~~V~~---~~y~~C~~~~~~~~~~~G~-~~v~L~~-G 108 (131)
.+..+|++ .++.+. ++..++++||++.|..... .|++...+. .+++.+...........|. .++++++ |
T Consensus 2 ~~V~m~~~~~~~~F~----P~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf~~~G 77 (98)
T 2plt_A 2 ATVKLGADSGALEFV----PKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKLTAAG 77 (98)
T ss_dssp EEEEESCTTCCSSEE----SSEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEECCSCE
T ss_pred EEEEEecCCCCceEe----CCEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEEeCCCe
Confidence 35566643 456665 4668999999999988654 899986532 1122110000011233344 3677765 9
Q ss_pred ceEEEcCCCCCCcCCCEEEEEeC
Q 039717 109 RNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 109 ~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
++.|+|. .||+.||+-.|.|.
T Consensus 78 ~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 78 EYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EEEEECG--GGGGGTCEEEEEEC
T ss_pred EEEEEcC--CccccCCeEEEEEC
Confidence 9999999 79999999999884
No 17
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.70 E-value=2.2e-08 Score=71.02 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=50.7
Q ss_pred cCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCcccc--CC-CcEEEcCC-CceEEEcCCCCCCcCCCEEEEE
Q 039717 54 ANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFS--SG-KDQIKLSK-GRNYFICSIPGHCEAGLKLAVD 129 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~--~G-~~~v~L~~-G~~yFic~~~~HC~~GmKl~I~ 129 (131)
++..++++||++.|.+.+..|+|...+. +.+. ....+. .| ..++++++ |.++|+|. .||..||+-.|.
T Consensus 20 P~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~-g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~ 91 (123)
T 3erx_A 20 PAFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPE-GVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQ 91 (123)
T ss_dssp SSEEEECTTEEEEEEESSTTCCCEECTT-----SSCT-TCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEE
T ss_pred CCEEEECCCCEEEEEECCCCceEEEcCC-----cCCC-CccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEE
Confidence 5788999999999999877899986421 2221 111122 12 34677865 99999999 799999999998
Q ss_pred e
Q 039717 130 A 130 (131)
Q Consensus 130 V 130 (131)
|
T Consensus 92 V 92 (123)
T 3erx_A 92 V 92 (123)
T ss_dssp E
T ss_pred E
Confidence 7
No 18
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.70 E-value=4.1e-08 Score=69.84 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=56.4
Q ss_pred ecCCC-CcccccccccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCc-cccCCC-cEEEcCC-CceEEEcC
Q 039717 40 VGDTS-GWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSK-SFSSGK-DQIKLSK-GRNYFICS 115 (131)
Q Consensus 40 VG~~~-gW~~~y~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~-~~~~G~-~~v~L~~-G~~yFic~ 115 (131)
+|++. ++.|. ++..++++||++.|.+....|+|...+. +.+..... ....|. .++++++ |.+.|+|.
T Consensus 10 ~g~~G~~~~F~----P~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~ 80 (124)
T 3ef4_A 10 KDDAGNTMVFQ----PGFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA 80 (124)
T ss_dssp ECTTSCEEEEE----SSEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEEECT
T ss_pred cCCCCceeEEe----CCEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEEEcC
Confidence 45443 47766 5789999999999999888999987431 22211111 111233 4678865 99999997
Q ss_pred CCCCCcCCCEEEEEe
Q 039717 116 IPGHCEAGLKLAVDA 130 (131)
Q Consensus 116 ~~~HC~~GmKl~I~V 130 (131)
.||..||+-.|+|
T Consensus 81 --~H~~~GM~G~I~V 93 (124)
T 3ef4_A 81 --PHYGMGMVVLVQV 93 (124)
T ss_dssp --TTGGGTCEEEEEE
T ss_pred --CCCcCCCEEEEEE
Confidence 6999999999987
No 19
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.68 E-value=1.3e-07 Score=62.83 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=57.4
Q ss_pred EEEecCC-CCcccccccccCCCeeeeCCEEEEEecC-CCceEEEEcCCC---CCCCCCCCCCccccCC-CcEEEcCC-Cc
Q 039717 37 TFTVGDT-SGWTYNIQSWANGKQFKAGDTLIFNYDA-SIHNVAVVDGNN---YQSCRASPTSKSFSSG-KDQIKLSK-GR 109 (131)
Q Consensus 37 ~~~VG~~-~gW~~~y~~Wa~~~~f~vGD~LvF~y~~-~~H~V~~V~~~~---y~~C~~~~~~~~~~~G-~~~v~L~~-G~ 109 (131)
+..+|++ .++.|. ++..++++||++.|.... ..|++...+... .+.+... . .....| ..++++++ |.
T Consensus 4 ~V~~~~~~~~~~F~----P~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~-~-~~~~~g~~~~~tf~~~G~ 77 (97)
T 1b3i_A 4 QIKMGTDKYAPLYE----PKALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNT-K-LAIAPGSFYSVTLGTPGT 77 (97)
T ss_dssp EEEEEETTTEEEEE----SSEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBC-C-CCCSCSCCEEEECCSCSE
T ss_pred EEEEeccCCccEEe----CCEEEECCCCEEEEEECCCCCeEEEEeCCCCcccccccccc-c-eecCCCCEEEEEeCCCeE
Confidence 4456643 455554 467899999999999865 479998764321 0001011 1 122233 34677765 99
Q ss_pred eEEEcCCCCCCcCCCEEEEEeC
Q 039717 110 NYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 110 ~yFic~~~~HC~~GmKl~I~V~ 131 (131)
++|+|. +||+.||+..|.|.
T Consensus 78 y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 78 YSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp EEEECS--STTTTTCEEEEEEC
T ss_pred EEEEcc--ChhhcCCEEEEEEC
Confidence 999999 89999999999883
No 20
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.68 E-value=4.3e-08 Score=69.86 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=56.1
Q ss_pred ecCCC-CcccccccccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCcccc--CC-CcEEEcCC-CceEEEc
Q 039717 40 VGDTS-GWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSFS--SG-KDQIKLSK-GRNYFIC 114 (131)
Q Consensus 40 VG~~~-gW~~~y~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~--~G-~~~v~L~~-G~~yFic 114 (131)
+|++. +..|. ++..++++||+|.|.+.+..|+|...+. +.+.... .+. .| ..++++++ |.++|+|
T Consensus 11 ~g~~g~~~~F~----P~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~-~f~s~pGet~s~TF~~pG~y~y~C 80 (127)
T 3tu6_A 11 KAADGRVMAFE----PAVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAE-TWKGKINEEITVTLSKPGVYMYQC 80 (127)
T ss_dssp ECTTSCEEEEE----SSEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCC-CCBCCTTCCCEEECCSCEEEEEEC
T ss_pred cCCCCcccEEe----CCEEEECCCCEEEEEECCCCceEEEccC-----cCCCCcc-ceecCCCCEEEEEeCCCeEEEEEe
Confidence 36544 45554 5788999999999999877899986432 1111111 111 12 34788865 9999999
Q ss_pred CCCCCCcCCCEEEEEeC
Q 039717 115 SIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 115 ~~~~HC~~GmKl~I~V~ 131 (131)
+ .||..||+-.|.|.
T Consensus 81 ~--~H~~~GM~G~I~V~ 95 (127)
T 3tu6_A 81 A--PHVGMGMIGAIVVG 95 (127)
T ss_dssp T--TTGGGTCEEEEEES
T ss_pred C--CCCcCCcEEEEEEC
Confidence 9 69999999999873
No 21
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.67 E-value=9e-08 Score=63.79 Aligned_cols=89 Identities=19% Similarity=0.337 Sum_probs=57.8
Q ss_pred EEEecC-CCCcccccccccCCCeeeeCCEEEEEecCC-CceEEEEcCC---CCCCCCCC--CCCccccCCC-cEEEcCC-
Q 039717 37 TFTVGD-TSGWTYNIQSWANGKQFKAGDTLIFNYDAS-IHNVAVVDGN---NYQSCRAS--PTSKSFSSGK-DQIKLSK- 107 (131)
Q Consensus 37 ~~~VG~-~~gW~~~y~~Wa~~~~f~vGD~LvF~y~~~-~H~V~~V~~~---~y~~C~~~--~~~~~~~~G~-~~v~L~~- 107 (131)
+..+|+ +.+..+. ++..++++||+|.|..... .|++...+.. .++.+... ........|. .++++++
T Consensus 2 ~V~~~~~~~~~~F~----P~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f~~~ 77 (99)
T 1byp_A 2 EVLLGSSDGGLAFV----PSDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEK 77 (99)
T ss_dssp EEEESCTTSCCSEE----SSEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEECSC
T ss_pred EEEEecCCCcceEe----CCEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEEeCCC
Confidence 345664 4556655 4678999999999988653 8998865421 12211100 0001223343 3677765
Q ss_pred CceEEEcCCCCCCcCCCEEEEEeC
Q 039717 108 GRNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 108 G~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
|.+.|+|. .||+.||+..|.|.
T Consensus 78 G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 78 GTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp EEEEEECG--GGTTTTCEEEEEEC
T ss_pred cEEEEEcC--CccccCCEEEEEEC
Confidence 99999999 79999999999884
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.46 E-value=9e-07 Score=58.72 Aligned_cols=89 Identities=19% Similarity=0.305 Sum_probs=56.4
Q ss_pred EEEecCC-CCcccccccccCCCeeeeCCEEEEEecC-CCceEEEEcCCC--CCCCCCCCCCccccCCC-cEEEcCC-Cce
Q 039717 37 TFTVGDT-SGWTYNIQSWANGKQFKAGDTLIFNYDA-SIHNVAVVDGNN--YQSCRASPTSKSFSSGK-DQIKLSK-GRN 110 (131)
Q Consensus 37 ~~~VG~~-~gW~~~y~~Wa~~~~f~vGD~LvF~y~~-~~H~V~~V~~~~--y~~C~~~~~~~~~~~G~-~~v~L~~-G~~ 110 (131)
+..+|.+ .++.|. ++..++++||++.|.... ..|++...+... -+.............|. .++++++ |++
T Consensus 4 ~V~~~~~~~~~~F~----P~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf~~~G~y 79 (98)
T 1pcs_A 4 TVKMGSDSGALVFE----PSTVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEPGTY 79 (98)
T ss_dssp EEEESCTTSCSSEE----SSEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECCSCEEE
T ss_pred EEEEecCCCccEEe----CCEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEcCCCeEE
Confidence 4556653 566665 466899999999999765 479988643210 00000000011223343 3677765 999
Q ss_pred EEEcCCCCCCcCCCEEEEEeC
Q 039717 111 YFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 111 yFic~~~~HC~~GmKl~I~V~ 131 (131)
.|+|. .||..||+-.|.|.
T Consensus 80 ~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 80 TYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp EEECG--GGTTTTCEEEEEEC
T ss_pred EEEcC--CccccCCeEEEEEC
Confidence 99999 79999999999884
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.08 E-value=6.6e-06 Score=58.29 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=46.0
Q ss_pred cCCCeeeeCCEEEEEecCC-CceEEEEcCCC----CCCCCCCCCCccccCCC-cEEEcCC-CceEEEcCCCCCCcCCCEE
Q 039717 54 ANGKQFKAGDTLIFNYDAS-IHNVAVVDGNN----YQSCRASPTSKSFSSGK-DQIKLSK-GRNYFICSIPGHCEAGLKL 126 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~~-~H~V~~V~~~~----y~~C~~~~~~~~~~~G~-~~v~L~~-G~~yFic~~~~HC~~GmKl 126 (131)
++..++++||++.|..... .|++...+... |+. .....|. .++++++ |.+.|+|+. |. ||+-
T Consensus 59 P~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g~~~~~s-------~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G 127 (132)
T 3c75_A 59 TPEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRG 127 (132)
T ss_dssp SSEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEE
T ss_pred CCEEEECCCCEEEEEECCCCceEEEEeCCCCCcccccc-------cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEE
Confidence 4678999999999987543 79998643221 110 1122333 3567765 999999987 75 9999
Q ss_pred EEEeC
Q 039717 127 AVDAS 131 (131)
Q Consensus 127 ~I~V~ 131 (131)
.|.|.
T Consensus 128 ~I~V~ 132 (132)
T 3c75_A 128 KVIVE 132 (132)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99873
No 24
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.90 E-value=5e-05 Score=50.42 Aligned_cols=87 Identities=21% Similarity=0.340 Sum_probs=54.6
Q ss_pred EEEecCC-CCcccccccccCCCeeeeCCEEEEEecC-CCceEEEEcCCCCCCCCC-------CCCCccccCCC-cEEEc-
Q 039717 37 TFTVGDT-SGWTYNIQSWANGKQFKAGDTLIFNYDA-SIHNVAVVDGNNYQSCRA-------SPTSKSFSSGK-DQIKL- 105 (131)
Q Consensus 37 ~~~VG~~-~gW~~~y~~Wa~~~~f~vGD~LvF~y~~-~~H~V~~V~~~~y~~C~~-------~~~~~~~~~G~-~~v~L- 105 (131)
+..+|.+ .+..+. +...++++||+|.|.... ..|++..-... . .+.. .........|. .++++
T Consensus 4 ~V~~~~~~~~~~f~----p~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~-~-~~~~g~~~~~~~~~~~~i~pG~~~~~~f~ 77 (105)
T 3cvb_A 4 TVKMGADSGLFQFE----PANVTVHPGDTVKWVNNKLPPHNILFDDKQ-V-PGASKELADKLSHSQLMFSPGESYEITFS 77 (105)
T ss_dssp EEEESCTTCCSCEE----SSEEEECTTEEEEEEECSSCCEEEEECTTS-S-GGGCHHHHHHHCEEEEECSTTCEEEEEEC
T ss_pred EEEEeecCCccEEe----CCEEEEcCCCEEEEEECCCCCCeEEEeCCC-C-CcccccccccccccccccCCCCeEEEEEe
Confidence 4556653 555554 456789999999998753 47998764211 1 1100 00001122333 35666
Q ss_pred --CC-CceEEEcCCCCCCcCCCEEEEEeC
Q 039717 106 --SK-GRNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 106 --~~-G~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
++ |+++|.|. .|+..||+-.|.|.
T Consensus 78 ~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 78 SDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp TTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred cCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 45 99999999 79999999999874
No 25
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=97.88 E-value=1.1e-05 Score=53.93 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=44.4
Q ss_pred cCCCeeeeCCEEEEEecC---CCceEEEEcCCCCCCCCCCCCCccccCCC-cEEEc--C-CCceEEEcCCCCCCcCCCEE
Q 039717 54 ANGKQFKAGDTLIFNYDA---SIHNVAVVDGNNYQSCRASPTSKSFSSGK-DQIKL--S-KGRNYFICSIPGHCEAGLKL 126 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~---~~H~V~~V~~~~y~~C~~~~~~~~~~~G~-~~v~L--~-~G~~yFic~~~~HC~~GmKl 126 (131)
++..++++||++.|.+.+ ..|++..-+ ... ......|. ..+.+ + +|.|.|+|. .||..||+-
T Consensus 27 P~~i~v~~G~tV~~~~~n~d~~~H~~~~~~-~~~--------~~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G 95 (100)
T 4hci_A 27 PNVITIPINESTTLLLKNKGKSEHTFTIKK-LGI--------DVVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEG 95 (100)
T ss_dssp SSEEEECTTSCEEEEEEECSSSCEEEEEGG-GTE--------EEEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEE
T ss_pred CCEEEECCCCEEEEEEEcCCCceEEEEEec-CCc--------ceeecCCcceeEEEecccCceEEEECc--cccCCCCEE
Confidence 477999999999998743 347765411 111 11223333 24444 4 499999996 599999999
Q ss_pred EEEeC
Q 039717 127 AVDAS 131 (131)
Q Consensus 127 ~I~V~ 131 (131)
.|.|.
T Consensus 96 ~i~Ve 100 (100)
T 4hci_A 96 KVIVK 100 (100)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99873
No 26
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.84 E-value=3.1e-05 Score=54.33 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=51.4
Q ss_pred cCCCCcccccccccCCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCccc-cCC-CcEEEcCC-CceEEEcCCC
Q 039717 41 GDTSGWTYNIQSWANGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSKSF-SSG-KDQIKLSK-GRNYFICSIP 117 (131)
Q Consensus 41 G~~~gW~~~y~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~~~-~~G-~~~v~L~~-G~~yFic~~~ 117 (131)
|++.+..|. ++..++++||+|.|......|+|...+. +.+....... ..| ..++++++ |.+.|+|+.
T Consensus 11 g~~g~~~F~----P~~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~- 80 (122)
T 2ux6_A 11 GKDGAMVFE----PASLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP- 80 (122)
T ss_dssp ETTEEEEEE----SSEEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT-
T ss_pred CCCCCceEe----CCEEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC-
Confidence 554334443 4678999999999999777899986431 1111111111 112 24677765 999999987
Q ss_pred CCCcCCCEEEEEeC
Q 039717 118 GHCEAGLKLAVDAS 131 (131)
Q Consensus 118 ~HC~~GmKl~I~V~ 131 (131)
|.. |+-.|.|.
T Consensus 81 -H~~--M~G~I~V~ 91 (122)
T 2ux6_A 81 -HPF--MVGVVQVG 91 (122)
T ss_dssp -EEE--EEEEEEES
T ss_pred -Ccc--CEEEEEEe
Confidence 887 99999873
No 27
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.83 E-value=9.4e-05 Score=54.91 Aligned_cols=90 Identities=21% Similarity=0.385 Sum_probs=56.0
Q ss_pred eEEEecCCCCcccccccccCCCee-eeCCEEEEEec--CC------CceEEEEcCCC---------------CCCCCCCC
Q 039717 36 STFTVGDTSGWTYNIQSWANGKQF-KAGDTLIFNYD--AS------IHNVAVVDGNN---------------YQSCRASP 91 (131)
Q Consensus 36 ~~~~VG~~~gW~~~y~~Wa~~~~f-~vGD~LvF~y~--~~------~H~V~~V~~~~---------------y~~C~~~~ 91 (131)
.++.|+.+++..|+ ++..++ +.||++.|.+. .. .|+++..+..+ |-.=+..+
T Consensus 43 ~~V~I~~~d~m~F~----P~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~ 118 (167)
T 3ay2_A 43 CAATVESNDNMQFN----TKDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDAR 118 (167)
T ss_dssp CEEEEEECTTSCBS----CSEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTT
T ss_pred eEEEEEeCCCceEe----cceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccccc
Confidence 46777755566665 466778 88997666653 33 29998765432 21101111
Q ss_pred C---CccccCCCc-EEEc-----CCCceEEEcCCCCCCcCCCEEEEEe
Q 039717 92 T---SKSFSSGKD-QIKL-----SKGRNYFICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 92 ~---~~~~~~G~~-~v~L-----~~G~~yFic~~~~HC~~GmKl~I~V 130 (131)
. ......|.+ ++++ ++|.|+|+|++++|=+ |||-.|+|
T Consensus 119 vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V 165 (167)
T 3ay2_A 119 VVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTL 165 (167)
T ss_dssp EEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEE
T ss_pred hhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEE
Confidence 0 112334443 4554 3599999999999988 99999887
No 28
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.81 E-value=0.00017 Score=51.12 Aligned_cols=89 Identities=19% Similarity=0.316 Sum_probs=55.0
Q ss_pred EEEecCCCCcccccccccCCCeeeeC-CEEEEEecC-C-------CceEEEEcCC----------------CCCCCCCCC
Q 039717 37 TFTVGDTSGWTYNIQSWANGKQFKAG-DTLIFNYDA-S-------IHNVAVVDGN----------------NYQSCRASP 91 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~Wa~~~~f~vG-D~LvF~y~~-~-------~H~V~~V~~~----------------~y~~C~~~~ 91 (131)
+..|+.+.+..|+ ++..+++.| |.+.|.+.+ + .|++...+.. +|..=+..+
T Consensus 4 ~v~i~~~d~m~F~----p~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~ 79 (129)
T 1cuo_A 4 ETTVTSGDTMTYS----TRSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKR 79 (129)
T ss_dssp EEEEEECSSSCCS----CSEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTT
T ss_pred EEEEEeCCCceEc----cCeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccccccccc
Confidence 4445544555655 467899999 977776643 2 3999877543 231101111
Q ss_pred CC---ccccCCCc---EEEcC----CCceEEEcCCCCCCcCCCEEEEEe
Q 039717 92 TS---KSFSSGKD---QIKLS----KGRNYFICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 92 ~~---~~~~~G~~---~v~L~----~G~~yFic~~~~HC~~GmKl~I~V 130 (131)
.+ .....|.+ +|+.+ +|.|+|+|++++|=+ |||-.|+|
T Consensus 80 ~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V 127 (129)
T 1cuo_A 80 VIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKL 127 (129)
T ss_dssp CSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEE
T ss_pred ceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEE
Confidence 11 12344443 34443 499999999999988 89998887
No 29
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.71 E-value=6.9e-05 Score=50.55 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=52.9
Q ss_pred cceEEEecCCCCcccccccccCCCeeeeCCEEEEEecCC-CceEEEEcCCC----CCCCCCCCCCccccCCC-cEEEcCC
Q 039717 34 ATSTFTVGDTSGWTYNIQSWANGKQFKAGDTLIFNYDAS-IHNVAVVDGNN----YQSCRASPTSKSFSSGK-DQIKLSK 107 (131)
Q Consensus 34 ~a~~~~VG~~~gW~~~y~~Wa~~~~f~vGD~LvF~y~~~-~H~V~~V~~~~----y~~C~~~~~~~~~~~G~-~~v~L~~ 107 (131)
.+.++.|-- .+|.+. ++..++++||+|.|..... .|++...+..+ ++.. ....|. .++++++
T Consensus 17 ~a~~~~V~~-~~~~F~----P~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~~~tf~~ 84 (105)
T 2ov0_A 17 ADGAIVVDI-AKMKYE----TPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAYSLTFTE 84 (105)
T ss_dssp CTTCEEEEE-ETTEES----SSEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEEEEEECS
T ss_pred CCcCEEEEE-eecEEc----CCEEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEEEEEeCC
Confidence 344555532 356654 4678999999999987544 79987643210 2211 122333 3567765
Q ss_pred -CceEEEcCCCCCCcCCCEEEEEeC
Q 039717 108 -GRNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 108 -G~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
|.++|.|.. |- ||+-.|.|.
T Consensus 85 ~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 85 AGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp CEEEEEECSS--CT--TCEEEEEEC
T ss_pred CEEEEEEeCC--CC--CCEEEEEEC
Confidence 999999987 53 999999873
No 30
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.62 E-value=0.00011 Score=49.72 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=46.0
Q ss_pred cCCCeeeeCCEEEEEecCC-CceEEEEcCCC----CCCCCCCCCCccccCCC-cEEEcCC-CceEEEcCCCCCCcCCCEE
Q 039717 54 ANGKQFKAGDTLIFNYDAS-IHNVAVVDGNN----YQSCRASPTSKSFSSGK-DQIKLSK-GRNYFICSIPGHCEAGLKL 126 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~~-~H~V~~V~~~~----y~~C~~~~~~~~~~~G~-~~v~L~~-G~~yFic~~~~HC~~GmKl 126 (131)
++..++++||+|.|..... .|++...+... |+. .....|. .++++++ |.+.|+|+. |. ||+-
T Consensus 33 P~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G 101 (106)
T 1id2_A 33 TPEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRG 101 (106)
T ss_dssp SSEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEE
T ss_pred CCEEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEE
Confidence 4678999999999986543 79987543210 110 1122333 3567765 999999997 76 9999
Q ss_pred EEEeC
Q 039717 127 AVDAS 131 (131)
Q Consensus 127 ~I~V~ 131 (131)
.|.|.
T Consensus 102 ~I~V~ 106 (106)
T 1id2_A 102 KVIVE 106 (106)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99873
No 31
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.53 E-value=0.00057 Score=48.38 Aligned_cols=89 Identities=20% Similarity=0.398 Sum_probs=52.6
Q ss_pred EEecCCCCcccccccccCCCee-eeCCEEEEEecC-C-------CceEEEEcCC----------------CCCCCCCCCC
Q 039717 38 FTVGDTSGWTYNIQSWANGKQF-KAGDTLIFNYDA-S-------IHNVAVVDGN----------------NYQSCRASPT 92 (131)
Q Consensus 38 ~~VG~~~gW~~~y~~Wa~~~~f-~vGD~LvF~y~~-~-------~H~V~~V~~~----------------~y~~C~~~~~ 92 (131)
..|+.++++.|+ ++..++ +.||++.|.+.+ + .|+++..+.+ +|..=+..+.
T Consensus 4 v~v~~~d~m~F~----p~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~ 79 (128)
T 2iaa_C 4 VSIEGNDSMQFN----TKSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERV 79 (128)
T ss_dssp EEEEECTTSCBS----CSEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTE
T ss_pred EEEEeCCCceEe----cCEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchh
Confidence 345544566664 355666 779977666643 2 3998876533 2321011110
Q ss_pred ---CccccCCCc-EEEc--C---CCc-eEEEcCCCCCCcCCCEEEEEeC
Q 039717 93 ---SKSFSSGKD-QIKL--S---KGR-NYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 93 ---~~~~~~G~~-~v~L--~---~G~-~yFic~~~~HC~~GmKl~I~V~ 131 (131)
......|.+ ++++ + +|. |.|+|++|+|=+ |||-.|+|.
T Consensus 80 ~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 80 IAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp EEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred hccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 112344543 4444 3 484 999999999988 999999873
No 32
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.52 E-value=0.00043 Score=49.02 Aligned_cols=90 Identities=24% Similarity=0.384 Sum_probs=54.5
Q ss_pred EEEecCCCCcccccccccCCCee-eeCCEEEEEecC--C------CceEEEEcCCC----------------CCCCCCCC
Q 039717 37 TFTVGDTSGWTYNIQSWANGKQF-KAGDTLIFNYDA--S------IHNVAVVDGNN----------------YQSCRASP 91 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~Wa~~~~f-~vGD~LvF~y~~--~------~H~V~~V~~~~----------------y~~C~~~~ 91 (131)
+..|+.++++.|+ ++..++ +.||++.|.+.+ . .|+++..+.++ |..=+..+
T Consensus 4 ~v~v~~~d~m~F~----p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~ 79 (128)
T 1nwp_A 4 KVTVDSTDQMSFN----TKDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDAR 79 (128)
T ss_dssp EEEEEECTTSCBS----CSEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTT
T ss_pred EEEEEeCCCccEe----cCEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccch
Confidence 4556555566665 466788 889987776643 2 29988764322 21101001
Q ss_pred CC---ccccCCCc-EEEc--C---CCc-eEEEcCCCCCCcCCCEEEEEeC
Q 039717 92 TS---KSFSSGKD-QIKL--S---KGR-NYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 92 ~~---~~~~~G~~-~v~L--~---~G~-~yFic~~~~HC~~GmKl~I~V~ 131 (131)
.+ .....|.+ ++++ + +|. |.|+|++|+|=+ |||-.|+|.
T Consensus 80 ~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 80 VIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp EEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred hheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 00 12344543 4444 3 566 999999999988 999999873
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.43 E-value=0.0011 Score=46.91 Aligned_cols=90 Identities=20% Similarity=0.375 Sum_probs=52.8
Q ss_pred EEEecCCCCcccccccccCCCee-eeCCEEEEEecC--C------CceEEEEcCC----------------CCCCCCCCC
Q 039717 37 TFTVGDTSGWTYNIQSWANGKQF-KAGDTLIFNYDA--S------IHNVAVVDGN----------------NYQSCRASP 91 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~Wa~~~~f-~vGD~LvF~y~~--~------~H~V~~V~~~----------------~y~~C~~~~ 91 (131)
+..|+.+++..|+ ++..++ +.||++.|.+.+ . .|+++..+.. +|..=+..+
T Consensus 4 ~v~v~~~d~m~F~----p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (129)
T 2ccw_A 4 EATVESNDAMQYN----VKEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTR 79 (129)
T ss_dssp EEEEEECTTSCBS----CSEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTT
T ss_pred EEEEEeCCCccEe----cceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhccccccccccccc
Confidence 4455555555554 355566 669976666642 2 3999876543 232111111
Q ss_pred C---CccccCCCc-EEE--cC---CCc-eEEEcCCCCCCcCCCEEEEEeC
Q 039717 92 T---SKSFSSGKD-QIK--LS---KGR-NYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 92 ~---~~~~~~G~~-~v~--L~---~G~-~yFic~~~~HC~~GmKl~I~V~ 131 (131)
. ......|.+ +++ .+ +|. |+|+|++++|=+ |||-.|+|.
T Consensus 80 ~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 80 VIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp EEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred ceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 0 112344443 444 43 555 999999999988 999999873
No 34
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.36 E-value=7e-05 Score=56.32 Aligned_cols=71 Identities=20% Similarity=0.383 Sum_probs=47.9
Q ss_pred eeCCEEEEE---ecCC------CceEEEEcCCCCCCCCCCC-CCc--cccC--CCcEEEc--------------CCC-ce
Q 039717 60 KAGDTLIFN---YDAS------IHNVAVVDGNNYQSCRASP-TSK--SFSS--GKDQIKL--------------SKG-RN 110 (131)
Q Consensus 60 ~vGD~LvF~---y~~~------~H~V~~V~~~~y~~C~~~~-~~~--~~~~--G~~~v~L--------------~~G-~~ 110 (131)
+.||.|-|- |..+ .+.+++|++++|+.|+... +.. .-+. +...|++ .+| .|
T Consensus 27 ~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~Y 106 (178)
T 1iko_P 27 QIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDY 106 (178)
T ss_dssp CTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEEE
T ss_pred cCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCce
Confidence 459999884 5322 3788999999999999762 221 1122 2223332 255 68
Q ss_pred EEEcCCC-----------CCCcC-CCEEEEEe
Q 039717 111 YFICSIP-----------GHCEA-GLKLAVDA 130 (131)
Q Consensus 111 yFic~~~-----------~HC~~-GmKl~I~V 130 (131)
||||.-. |+|.. +|||.|.|
T Consensus 107 Y~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV 138 (178)
T 1iko_P 107 YIISTSNGSLEGLDNQEGGVCQTRAMKILMKV 138 (178)
T ss_dssp EEECCCCBSGGGTTCCBSHHHHHSCCEEEEEE
T ss_pred EEEecCCcccccccccCCCccccceeEEEEEe
Confidence 9999864 68976 89999987
No 35
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=96.86 E-value=0.0011 Score=49.96 Aligned_cols=95 Identities=21% Similarity=0.407 Sum_probs=52.7
Q ss_pred cccccceEEEecCCCCccc-cccccc--CCCeeeeCCEEEE---EecCC--------CceEEEEcCCCCCCCCCCC-CCc
Q 039717 30 HSTEATSTFTVGDTSGWTY-NIQSWA--NGKQFKAGDTLIF---NYDAS--------IHNVAVVDGNNYQSCRASP-TSK 94 (131)
Q Consensus 30 ~~~a~a~~~~VG~~~gW~~-~y~~Wa--~~~~f~vGD~LvF---~y~~~--------~H~V~~V~~~~y~~C~~~~-~~~ 94 (131)
++.+++..+.| -|+. |.--+. -....++||.|-+ +|+.+ ...++.|++++|++|+... +..
T Consensus 24 ~~~~sa~rh~V----yWNSsNp~F~~~~y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~ 99 (182)
T 3czu_B 24 GAMDAADRHTV----FWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQV 99 (182)
T ss_dssp -----CCEEEE----ECSTTCGGGTTSCCEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGE
T ss_pred hhhhhccccce----EEcCCCccccCCCceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcE
Confidence 44556667777 6872 321111 2355688999977 45432 3567899999999999753 221
Q ss_pred ccc-------CCCcEEE--------------cCCC-ceEEEcCC----CCCCcCCCEEEEEeC
Q 039717 95 SFS-------SGKDQIK--------------LSKG-RNYFICSI----PGHCEAGLKLAVDAS 131 (131)
Q Consensus 95 ~~~-------~G~~~v~--------------L~~G-~~yFic~~----~~HC~~GmKl~I~V~ 131 (131)
.+. .|..+|+ ..+| .||||+.- +|.| ||+.|.|.
T Consensus 100 ~~~C~~P~~~~~p~kftikFQ~FSP~p~GlEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~ 159 (182)
T 3czu_B 100 RWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRC---LRLKVTVS 159 (182)
T ss_dssp EEEECCTTCTTSCCEEEEECCSCCSCTTSCCCCTTCEEEEEEEESSSCCCSC---CEEEEEEC
T ss_pred EEEeCCCCCCCCCcEEEEEEEEcCCCCCCeeEeCCCeEEEEEccCCCCCCcc---eEEEEEEe
Confidence 111 1222222 2344 47888852 3455 89998873
No 36
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=96.45 E-value=0.0018 Score=48.57 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=35.3
Q ss_pred cccceEEEecCCCCccc-cccccc--CCCeeeeCCEEEE---EecC-------CCceEEEEcCCCCCCCCCCC
Q 039717 32 TEATSTFTVGDTSGWTY-NIQSWA--NGKQFKAGDTLIF---NYDA-------SIHNVAVVDGNNYQSCRASP 91 (131)
Q Consensus 32 ~a~a~~~~VG~~~gW~~-~y~~Wa--~~~~f~vGD~LvF---~y~~-------~~H~V~~V~~~~y~~C~~~~ 91 (131)
.+.+..+.| -|+. |.--+. -....+.||.|-+ +|+. ....++.|++++|++|+..+
T Consensus 28 ~~~~~r~~V----yWNSsNp~F~~~~~~i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~ 96 (177)
T 2x11_B 28 AAVADRYAV----YWNSSNPRFQRGDYHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTS 96 (177)
T ss_dssp --CCSEEEE----ECSTTCHHHHTSCCEEEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTT
T ss_pred eccCccCce----EcCCCCcCccCCCceEEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCC
Confidence 355666766 6872 211111 1255778999977 4542 24567899999999999754
No 37
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.04 E-value=0.005 Score=44.57 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=47.3
Q ss_pred eeeeCCEEEEE---ecC---------CCceEEEEcCCCCCCCCCCC-CCcccc----CCCcEE--------------EcC
Q 039717 58 QFKAGDTLIFN---YDA---------SIHNVAVVDGNNYQSCRASP-TSKSFS----SGKDQI--------------KLS 106 (131)
Q Consensus 58 ~f~vGD~LvF~---y~~---------~~H~V~~V~~~~y~~C~~~~-~~~~~~----~G~~~v--------------~L~ 106 (131)
..+.||.|-+- |.. ....++.|++++|++|+... +...+. .++..| ...
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF~ 102 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFR 102 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceeee
Confidence 55678999774 443 24568899999999999752 222221 122222 223
Q ss_pred CC-ceEEEcCCC-----------CCCcC-CCEEEEEeC
Q 039717 107 KG-RNYFICSIP-----------GHCEA-GLKLAVDAS 131 (131)
Q Consensus 107 ~G-~~yFic~~~-----------~HC~~-GmKl~I~V~ 131 (131)
+| .||||++-. |-|.. .|||.|.|.
T Consensus 103 pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 103 SHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp TTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred CCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 54 578888643 46866 799999883
No 38
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=95.79 E-value=0.014 Score=39.05 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=41.9
Q ss_pred cCCCeeeeCCEEEEEecC---CCceEEEEcCCCCCCCCCCCCCccccCCCc-EEEc--CC-CceEEEcCCCCCCcC-CCE
Q 039717 54 ANGKQFKAGDTLIFNYDA---SIHNVAVVDGNNYQSCRASPTSKSFSSGKD-QIKL--SK-GRNYFICSIPGHCEA-GLK 125 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~---~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~-~v~L--~~-G~~yFic~~~~HC~~-GmK 125 (131)
++..++++||.+.|.+.+ ..|++..-+ .+. ......|.. ++++ ++ |.++|.|.. ||.. +|+
T Consensus 37 p~~i~v~~G~~V~~~~~n~d~~~H~~~i~~-~~~--------~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~ 105 (112)
T 1iby_A 37 PETLVVKKGDAVKVVVENKSPISEGFSIDA-FGV--------QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLP 105 (112)
T ss_dssp SCEEEEETTCEEEEEEEECSSSCEEEEEGG-GTE--------EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCC
T ss_pred CCEEEEeCCCEEEEEEEECCCCeEEEEEcC-CCc--------eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCE
Confidence 466889999999997743 268765322 110 112233432 4544 54 999999987 6743 399
Q ss_pred EEEEe
Q 039717 126 LAVDA 130 (131)
Q Consensus 126 l~I~V 130 (131)
..|.|
T Consensus 106 g~i~V 110 (112)
T 1iby_A 106 GTLNV 110 (112)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88876
No 39
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=95.50 E-value=0.078 Score=37.43 Aligned_cols=66 Identities=21% Similarity=0.409 Sum_probs=43.2
Q ss_pred cCCCeeeeCCEEEEEecC--CCceEEEEcCCCCCCCCCCCCCccccCCC---cEEEcCC-CceEEEcCC---CCCCcCCC
Q 039717 54 ANGKQFKAGDTLIFNYDA--SIHNVAVVDGNNYQSCRASPTSKSFSSGK---DQIKLSK-GRNYFICSI---PGHCEAGL 124 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~--~~H~V~~V~~~~y~~C~~~~~~~~~~~G~---~~v~L~~-G~~yFic~~---~~HC~~Gm 124 (131)
++..++.+||.+.|...+ -.|+... ...+.+ .....|. ..++.++ |.++|.|+. .+| .+|
T Consensus 59 P~~l~Vp~G~~V~~~vts~DV~Hsf~i-p~~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~~H--~~M 127 (135)
T 2cua_A 59 PNPIEVPQGAEIVFKITSPDVIHGFHV-EGTNIN--------VEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNM 127 (135)
T ss_dssp SSSEEEETTSEEEEEEEBSSSCEEEEE-TTSSCE--------EEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTC
T ss_pred CCEEEEcCCCEEEEEEEeCCccceEEe-cCCCce--------eEeCCCCcEEEEEEcCCCEEEEEECcccCCCCc--CCC
Confidence 467899999999999854 3576653 211110 1122343 2456665 999999987 455 789
Q ss_pred EEEEEe
Q 039717 125 KLAVDA 130 (131)
Q Consensus 125 Kl~I~V 130 (131)
+..|.|
T Consensus 128 ~g~v~V 133 (135)
T 2cua_A 128 FGTIVV 133 (135)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999887
No 40
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=95.31 E-value=0.0045 Score=44.72 Aligned_cols=73 Identities=19% Similarity=0.356 Sum_probs=45.3
Q ss_pred eeeCCEEEEE---ecCC------CceEEEEcCCCCCCCCCCC-CCcccc----CCCcEE--------------EcCCC-c
Q 039717 59 FKAGDTLIFN---YDAS------IHNVAVVDGNNYQSCRASP-TSKSFS----SGKDQI--------------KLSKG-R 109 (131)
Q Consensus 59 f~vGD~LvF~---y~~~------~H~V~~V~~~~y~~C~~~~-~~~~~~----~G~~~v--------------~L~~G-~ 109 (131)
.+.||.|-+- |..+ ...++.|++++|+.|+... +...+. .++..+ ...+| +
T Consensus 25 v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~~ 104 (140)
T 2vsm_B 25 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD 104 (140)
T ss_dssp CCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 3568999884 4322 4677899999999999752 221111 122222 22355 4
Q ss_pred eEEEcCCC-----------CCCcC-CCEEEEEeC
Q 039717 110 NYFICSIP-----------GHCEA-GLKLAVDAS 131 (131)
Q Consensus 110 ~yFic~~~-----------~HC~~-GmKl~I~V~ 131 (131)
+|||+.-. |-|.. .|||.|.|.
T Consensus 105 YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~ 138 (140)
T 2vsm_B 105 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVG 138 (140)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEET
T ss_pred eEEEecCCCCccccccccCCccccceEEEEEEec
Confidence 78888643 47865 799999883
No 41
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=94.85 E-value=0.023 Score=40.95 Aligned_cols=72 Identities=21% Similarity=0.350 Sum_probs=44.7
Q ss_pred CeeeeCCEEEE---EecC-------CCceEEEEcCCCCCCCCCCCCCc-ccc-------CCCcEEE--------------
Q 039717 57 KQFKAGDTLIF---NYDA-------SIHNVAVVDGNNYQSCRASPTSK-SFS-------SGKDQIK-------------- 104 (131)
Q Consensus 57 ~~f~vGD~LvF---~y~~-------~~H~V~~V~~~~y~~C~~~~~~~-~~~-------~G~~~v~-------------- 104 (131)
...+.||.|-+ +|.. ....++.|++++|++|+..+... .+. .++.+|+
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 45678999977 4542 24567899999999998754321 111 1333332
Q ss_pred cCCC-ceEEEcCCC-----CCCcCCCEEEEEeC
Q 039717 105 LSKG-RNYFICSIP-----GHCEAGLKLAVDAS 131 (131)
Q Consensus 105 L~~G-~~yFic~~~-----~HC~~GmKl~I~V~ 131 (131)
..+| .||||++-. +-| |||.|.|.
T Consensus 103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~ 132 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVR 132 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCC---CEEEEEEC
T ss_pred ecCCCeEEEEEcCCCCCCCCce---eEEEEEEE
Confidence 2255 478887533 335 99999874
No 42
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=94.28 E-value=0.037 Score=40.66 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=25.6
Q ss_pred CeeeeCCEEEEE---ecCC--------CceEEEEcCCCCCCCCCCC
Q 039717 57 KQFKAGDTLIFN---YDAS--------IHNVAVVDGNNYQSCRASP 91 (131)
Q Consensus 57 ~~f~vGD~LvF~---y~~~--------~H~V~~V~~~~y~~C~~~~ 91 (131)
..++.||.|-+- |..+ ...++.|++++|++|+..+
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~ 77 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQ 77 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTT
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCC
Confidence 456789999874 5321 2357899999999999754
No 43
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=93.49 E-value=0.92 Score=31.82 Aligned_cols=84 Identities=18% Similarity=0.307 Sum_probs=48.2
Q ss_pred ecCCCCcccccccccCCCeeee-CCEEEEEecC-C-------CceEEEEcCC----------------CCCCCCCCCCC-
Q 039717 40 VGDTSGWTYNIQSWANGKQFKA-GDTLIFNYDA-S-------IHNVAVVDGN----------------NYQSCRASPTS- 93 (131)
Q Consensus 40 VG~~~gW~~~y~~Wa~~~~f~v-GD~LvF~y~~-~-------~H~V~~V~~~----------------~y~~C~~~~~~- 93 (131)
|-.+++..|+ ++..+++. |+++.|.+.+ + .||++..+.+ +|-.=+.++.+
T Consensus 7 i~~~d~M~F~----p~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via 82 (125)
T 3fsa_A 7 IQGNDQMQFN----TNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIA 82 (125)
T ss_dssp EEBCTTSCBS----CSEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCE
T ss_pred EEccCCcEEe----cCEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCcccee
Confidence 3334455554 35556654 9998777753 3 3999876322 33211111111
Q ss_pred --ccccCCCc-EEEc--C---C-CceEEEcCCCCCCcCCCEEEEEeC
Q 039717 94 --KSFSSGKD-QIKL--S---K-GRNYFICSIPGHCEAGLKLAVDAS 131 (131)
Q Consensus 94 --~~~~~G~~-~v~L--~---~-G~~yFic~~~~HC~~GmKl~I~V~ 131 (131)
.....|.+ ++++ + + |.|-|+|+ +|= |||-.|.|.
T Consensus 83 ~t~~l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 83 HTKLIGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp ECCCBCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred ccceeCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 12344543 4444 3 4 99999999 885 999988873
No 44
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=91.21 E-value=0.29 Score=39.88 Aligned_cols=70 Identities=23% Similarity=0.308 Sum_probs=46.0
Q ss_pred cCCCeeeeCCEEEEEecCC---CceEEEEcCCCCCCCCCCCCCccccCCC-c--EEEcCC-CceEEEcCCCCCCcCCCEE
Q 039717 54 ANGKQFKAGDTLIFNYDAS---IHNVAVVDGNNYQSCRASPTSKSFSSGK-D--QIKLSK-GRNYFICSIPGHCEAGLKL 126 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~~---~H~V~~V~~~~y~~C~~~~~~~~~~~G~-~--~v~L~~-G~~yFic~~~~HC~~GmKl 126 (131)
....+++.||+++|++.+. .|++..-....-..|.. ..|. . .|++++ |++||.|..++|=..||+.
T Consensus 54 ~p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i-------~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G 126 (447)
T 2dv6_A 54 NPTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVN-------GKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEG 126 (447)
T ss_dssp SCCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBC-------STTBEEEEEEECCSCEEEEEECCSTTHHHHTCEE
T ss_pred CCeEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceec-------CCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEE
Confidence 4668899999999988542 37765322221122322 2232 2 355554 9999999999998889988
Q ss_pred EEEe
Q 039717 127 AVDA 130 (131)
Q Consensus 127 ~I~V 130 (131)
.|.|
T Consensus 127 ~i~V 130 (447)
T 2dv6_A 127 NIQV 130 (447)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 45
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=90.00 E-value=0.62 Score=40.52 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=41.8
Q ss_pred cCCCeeeeCCEEEEEecCC------CceEEEEcCCCCCCCCCCCCCccccCCCc---EEEcCC-CceEEEcCC---CCCC
Q 039717 54 ANGKQFKAGDTLIFNYDAS------IHNVAVVDGNNYQSCRASPTSKSFSSGKD---QIKLSK-GRNYFICSI---PGHC 120 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~~------~H~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~L~~-G~~yFic~~---~~HC 120 (131)
+...++++||++.|...+. .|++..-+ ...+ .....|.. +|+.++ |.+||.|.. ..|
T Consensus 512 pp~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~gv~--------~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H- 581 (595)
T 1fwx_A 512 IESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YGVA--------MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH- 581 (595)
T ss_dssp CSEEEEETTCEEEEEEEECCCSTTCCEEEEETT-TTEE--------EEECTTCEEEEEEECCSCEEEEEECCSCCSTTC-
T ss_pred CCEEEEECCCEEEEEEEeCCCCCCceeeEEecC-CCcc--------eeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc-
Confidence 3567889999999987541 57765421 1110 11222332 456655 999999984 356
Q ss_pred cCCCEEEEEe
Q 039717 121 EAGLKLAVDA 130 (131)
Q Consensus 121 ~~GmKl~I~V 130 (131)
.||+..|.|
T Consensus 582 -~gM~G~IiV 590 (595)
T 1fwx_A 582 -MEMRGRMLV 590 (595)
T ss_dssp -TTCEEEEEE
T ss_pred -cCCEEEEEE
Confidence 499998876
No 46
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=89.83 E-value=0.24 Score=35.25 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=25.9
Q ss_pred CeeeeCCEEEE---EecCC--------CceEEEEcCCCCCCCCCCC
Q 039717 57 KQFKAGDTLIF---NYDAS--------IHNVAVVDGNNYQSCRASP 91 (131)
Q Consensus 57 ~~f~vGD~LvF---~y~~~--------~H~V~~V~~~~y~~C~~~~ 91 (131)
...++||.|-+ +|+.+ ...++.|++++|++|+...
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~ 67 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQS 67 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCC
Confidence 45578999977 45432 3567799999999999754
No 47
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=87.92 E-value=2.9 Score=30.56 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=41.3
Q ss_pred CCCeeeeCCEEEEEecCC--CceEEEEcCCCCCCCCCCCCCc-cccCCC---cEEEcCC-CceEEEcCC-CCCCcCCCEE
Q 039717 55 NGKQFKAGDTLIFNYDAS--IHNVAVVDGNNYQSCRASPTSK-SFSSGK---DQIKLSK-GRNYFICSI-PGHCEAGLKL 126 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~--~H~V~~V~~~~y~~C~~~~~~~-~~~~G~---~~v~L~~-G~~yFic~~-~~HC~~GmKl 126 (131)
+...+.+|+.+.|.-++. .|+... .. + .++ ....|. ..++.++ |.+|+.|+. -|+--.+|+.
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~I-P~--l-------gik~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g 162 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHV-EG--T-------NINVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFG 162 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEE-TT--S-------SCEEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEE-CC--C-------CeEEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEE
Confidence 668899999999987643 455543 11 1 111 111233 2455555 999999996 3444467999
Q ss_pred EEEe
Q 039717 127 AVDA 130 (131)
Q Consensus 127 ~I~V 130 (131)
.|.|
T Consensus 163 ~V~V 166 (168)
T 3s8f_B 163 TIVV 166 (168)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9887
No 48
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=84.36 E-value=2.1 Score=37.52 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=41.9
Q ss_pred cCCCeeeeCCEEEEEecC------CCceEEEEcCCCCCCCCCCCCCc-cccCCCc---EEEcCC-CceEEEcCCCCCCcC
Q 039717 54 ANGKQFKAGDTLIFNYDA------SIHNVAVVDGNNYQSCRASPTSK-SFSSGKD---QIKLSK-GRNYFICSIPGHCEA 122 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~------~~H~V~~V~~~~y~~C~~~~~~~-~~~~G~~---~v~L~~-G~~yFic~~~~HC~~ 122 (131)
++..++.+||.+.|...+ -.|+...-+ + .+. ....|.. +|+.++ |.+||.|+. .|-.
T Consensus 557 P~eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---l-------GIK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa 624 (638)
T 3sbq_A 557 VQEFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---H-------GVSMEISPQQTSSITFVADKPGLHWYYCSW--FCHA 624 (638)
T ss_dssp CCEEEEETTCEEEEEEEECCCSTTCCEEEEETT---T-------TEEEEECTTCEEEEEEECCSCEEEEEECCS--CCST
T ss_pred CCEEEEecCceeEEEEecCCcCCCceeeeEecC---C-------CceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCC
Confidence 466889999999998754 267765411 1 111 1223432 455555 999999997 4554
Q ss_pred C---CEEEEEe
Q 039717 123 G---LKLAVDA 130 (131)
Q Consensus 123 G---mKl~I~V 130 (131)
+ |+..|.|
T Consensus 625 ~Hs~M~G~ViV 635 (638)
T 3sbq_A 625 LHMEMVGRMMV 635 (638)
T ss_dssp TCTTCEEEEEE
T ss_pred CcccceEEEEE
Confidence 4 9988877
No 49
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=84.11 E-value=1 Score=38.40 Aligned_cols=75 Identities=15% Similarity=0.273 Sum_probs=49.0
Q ss_pred cCCCeeeeCCEEEEEecCCCceEEEEc---CCCCCCCCCCCCCccccC--CCcEEEcCCCceEEEcCCCCCCcCCC-EEE
Q 039717 54 ANGKQFKAGDTLIFNYDASIHNVAVVD---GNNYQSCRASPTSKSFSS--GKDQIKLSKGRNYFICSIPGHCEAGL-KLA 127 (131)
Q Consensus 54 a~~~~f~vGD~LvF~y~~~~H~V~~V~---~~~y~~C~~~~~~~~~~~--G~~~v~L~~G~~yFic~~~~HC~~Gm-Kl~ 127 (131)
+.+...+-|-.++|.=-...-+--.++ -.+..+|..+.-. |.+ =+....|++|.+||..+...-|++|- |+.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (491)
T 3l6w_A 410 PPKVVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFS--FHAFELGKMYSVESGDYFMTASTTELCNDNNLRIH 487 (491)
T ss_pred CCeeEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCc--cCcccccceEecCCCceEecCChHHHHhCCceeEE
Confidence 345667888888885532211111223 3455568875322 221 13467788999999999999999997 999
Q ss_pred EEe
Q 039717 128 VDA 130 (131)
Q Consensus 128 I~V 130 (131)
|.|
T Consensus 488 ~~~ 490 (491)
T 3l6w_A 488 VHV 490 (491)
T ss_pred EEe
Confidence 987
No 50
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=82.33 E-value=0.41 Score=31.83 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=14.8
Q ss_pred CCCeeeeCCEEEEEecCC
Q 039717 55 NGKQFKAGDTLIFNYDAS 72 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~ 72 (131)
..+..+.||.|+|+|...
T Consensus 74 ~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 74 KDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HHHTCCTTCEEEEEECSS
T ss_pred HHcCCCCCCEEEEEEcCC
Confidence 457789999999999754
No 51
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=80.65 E-value=0.68 Score=33.01 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=18.0
Q ss_pred CCCeeeeCCEEEEEecCCCceEEEE
Q 039717 55 NGKQFKAGDTLIFNYDASIHNVAVV 79 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~~H~V~~V 79 (131)
..+.+++||.++|.+....--+++|
T Consensus 113 ~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 113 LENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHcCCCCCCEEEEEEecCCceEEEE
Confidence 4588899999999997543224544
No 52
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=72.28 E-value=1.6 Score=28.56 Aligned_cols=16 Identities=38% Similarity=0.802 Sum_probs=12.4
Q ss_pred CeeeeCCEEEEE-ecCC
Q 039717 57 KQFKAGDTLIFN-YDAS 72 (131)
Q Consensus 57 ~~f~vGD~LvF~-y~~~ 72 (131)
..|++||.|+|. |+++
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 559999999994 6544
No 53
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=67.44 E-value=3.2 Score=27.66 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=25.6
Q ss_pred EEEecCCCCcccccccccCCCeeeeCCEEEEE
Q 039717 37 TFTVGDTSGWTYNIQSWANGKQFKAGDTLIFN 68 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~Wa~~~~f~vGD~LvF~ 68 (131)
+.++||+.| .+..+.|-.. |++||++.+.
T Consensus 41 ~~~l~DeTG-~I~~tlW~~~--l~~Gdvv~i~ 69 (106)
T 2k75_A 41 QGYIEDDTA-RIRISSFGKQ--LQDSDVVRID 69 (106)
T ss_dssp EEEEECSSC-EEEEEEESSC--CCTTEEEEEE
T ss_pred EEEEEcCCC-eEEEEEEcCc--cCCCCEEEEE
Confidence 578999998 7788999877 9999999998
No 54
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=56.78 E-value=14 Score=28.72 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCeeeeCCEEEEEecCC-----CceEEEEcCCCCCCCCCCCCCccccCCCc---EEEcCC-CceEEEcCCCC----CCcC
Q 039717 56 GKQFKAGDTLIFNYDAS-----IHNVAVVDGNNYQSCRASPTSKSFSSGKD---QIKLSK-GRNYFICSIPG----HCEA 122 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~L~~-G~~yFic~~~~----HC~~ 122 (131)
..+++.||+|++++.+. .|++..=.....+ . ..+......|.. .|++++ |++||-|...+ |=..
T Consensus 66 ~i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~--~-~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 142 (336)
T 1oe1_A 66 TLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGAL--G-GAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142 (336)
T ss_dssp CEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--G-GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred eEEEcCCCEEEEEEEcCCCCCccccceECCCCCCC--C-CcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhC
Confidence 46778999999888542 4666542111000 0 011111233432 355555 99999998754 4467
Q ss_pred CCEEEEEe
Q 039717 123 GLKLAVDA 130 (131)
Q Consensus 123 GmKl~I~V 130 (131)
||.-.+.|
T Consensus 143 Gl~G~liV 150 (336)
T 1oe1_A 143 GMSGTLMV 150 (336)
T ss_dssp TCEEEEEE
T ss_pred CCeEEEEE
Confidence 88766654
No 55
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=56.02 E-value=7.2 Score=25.02 Aligned_cols=29 Identities=21% Similarity=0.494 Sum_probs=20.8
Q ss_pred CCCcc-----cccccccCCCeeeeCCEEEEEecC
Q 039717 43 TSGWT-----YNIQSWANGKQFKAGDTLIFNYDA 71 (131)
Q Consensus 43 ~~gW~-----~~y~~Wa~~~~f~vGD~LvF~y~~ 71 (131)
+.+|. |...+.+.-..+++||.+.|.+..
T Consensus 27 ~l~wPaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~ 60 (82)
T 2l55_A 27 SAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRL 60 (82)
T ss_dssp TTTCCCEEEEEECCTTCCCSSCSTTCEEEEEEEE
T ss_pred ccCCCceEEEEEcCChhHhhcCCCCCEEEEEEEE
Confidence 35675 334445556889999999999964
No 56
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=54.53 E-value=7 Score=26.04 Aligned_cols=32 Identities=16% Similarity=0.423 Sum_probs=26.3
Q ss_pred eEEEecCCCCccccccccc--CCCeeeeCCEEEEE
Q 039717 36 STFTVGDTSGWTYNIQSWA--NGKQFKAGDTLIFN 68 (131)
Q Consensus 36 ~~~~VG~~~gW~~~y~~Wa--~~~~f~vGD~LvF~ 68 (131)
..-++||+.| .+.++.|. ....+..||++.++
T Consensus 37 ~~~~l~DeTG-~I~~t~W~~~~~~~~~~G~~V~i~ 70 (109)
T 2kbn_A 37 QVGLLGDETG-IIKFTIWKNAELPLLEQGESYLLR 70 (109)
T ss_dssp EEEEEECTTC-CEEEEEEGGGCCCCCCTTCEEEEE
T ss_pred EEEEEECCCC-eEEEEEECcccccccCCCCEEEEE
Confidence 3468999988 67888997 44689999999987
No 57
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=52.98 E-value=4.7 Score=27.83 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=13.1
Q ss_pred CCeeeeCCEEEEEecC
Q 039717 56 GKQFKAGDTLIFNYDA 71 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~ 71 (131)
.+..++||.++|....
T Consensus 89 ~~~L~~GD~~~F~~~~ 104 (130)
T 1wid_A 89 EKNLRAGDVVSFSRSN 104 (130)
T ss_dssp HTTCCTTCEEEEEECC
T ss_pred HcCCCCCCEEEEEEec
Confidence 3666899999999975
No 58
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=52.83 E-value=13 Score=29.10 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=39.7
Q ss_pred CCCeeeeCCEEEEEecCC-----CceEEEEcCCCCCCCCCCCCCccccCCCc---EEEcCC-CceEEEcCCC---CCCcC
Q 039717 55 NGKQFKAGDTLIFNYDAS-----IHNVAVVDGNNYQSCRASPTSKSFSSGKD---QIKLSK-GRNYFICSIP---GHCEA 122 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~L~~-G~~yFic~~~---~HC~~ 122 (131)
...+++.||++++++.+. .|++..=.....|. .+... ....|.. .|+.++ |++||-|... .|=..
T Consensus 70 P~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG--~~~~~-~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~ 146 (327)
T 1kbv_A 70 RMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG--GAAAT-FTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIAN 146 (327)
T ss_dssp CBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG--GTTTT-CBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred CeEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC--CCcce-eecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhc
Confidence 347788999999987543 46654310001110 00001 1223332 344454 9999999763 35567
Q ss_pred CCEEEEEe
Q 039717 123 GLKLAVDA 130 (131)
Q Consensus 123 GmKl~I~V 130 (131)
||.-.+.|
T Consensus 147 Gl~G~~iV 154 (327)
T 1kbv_A 147 GMYGLILV 154 (327)
T ss_dssp TCEEEEEE
T ss_pred ceEEEEEE
Confidence 88766654
No 59
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=51.58 E-value=16 Score=28.34 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=40.8
Q ss_pred CCeeeeCCEEEEEecCC-----CceEEEEcCCCCCCCCCCCCCccccCCCc---EEEcCC-CceEEEcCCCC-----CCc
Q 039717 56 GKQFKAGDTLIFNYDAS-----IHNVAVVDGNNYQSCRASPTSKSFSSGKD---QIKLSK-GRNYFICSIPG-----HCE 121 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~L~~-G~~yFic~~~~-----HC~ 121 (131)
..+++.||+|++++.+. .|.+..-...+.+.- .+......|.. .|+.++ |++||-|...+ |=.
T Consensus 65 ~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 141 (333)
T 1mzy_A 65 LMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV 141 (333)
T ss_dssp EEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH
T ss_pred cEEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhh
Confidence 36778999999988643 366553211111100 01111233432 455555 99999998764 666
Q ss_pred CCCEEEEEe
Q 039717 122 AGLKLAVDA 130 (131)
Q Consensus 122 ~GmKl~I~V 130 (131)
.||.-.+.|
T Consensus 142 ~Gl~G~~iV 150 (333)
T 1mzy_A 142 SGMAGCIMV 150 (333)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 788766554
No 60
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=51.28 E-value=0.15 Score=26.17 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=14.2
Q ss_pred CCCeeeeCCEEEEEecCCCc
Q 039717 55 NGKQFKAGDTLIFNYDASIH 74 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~~H 74 (131)
.+++|.|.|.|.|.|....|
T Consensus 3 pskpfnvddvlkftftgekh 22 (27)
T 2hzs_I 3 PSKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp ---CCCHHHHHHHHHHCCCC
T ss_pred CCCCcChhheEEEEeccccc
Confidence 35889999999999976544
No 61
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=49.05 E-value=5.5 Score=27.13 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=10.9
Q ss_pred CCCeeeeCCEEEE
Q 039717 55 NGKQFKAGDTLIF 67 (131)
Q Consensus 55 ~~~~f~vGD~LvF 67 (131)
+.+.+++||.|.|
T Consensus 30 k~~~ikvGD~I~f 42 (109)
T 2z0t_A 30 KRRQIKPGDIIIF 42 (109)
T ss_dssp TGGGCCTTCEEEE
T ss_pred hhhcCCCCCEEEE
Confidence 3467899999999
No 62
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=48.13 E-value=9.7 Score=30.79 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=39.5
Q ss_pred CCCeeeeCCEEEEEecCC-----CceEEEEcCCCCCCCCCCCCCccccCCC-c--EEEcCC-CceEEEcC---CCCCCcC
Q 039717 55 NGKQFKAGDTLIFNYDAS-----IHNVAVVDGNNYQSCRASPTSKSFSSGK-D--QIKLSK-GRNYFICS---IPGHCEA 122 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G~-~--~v~L~~-G~~yFic~---~~~HC~~ 122 (131)
...+++.||++++.+.+. .|++..=.....|. .........|. . .|+.++ |++||-|- ...|=..
T Consensus 60 p~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG---~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~ 136 (442)
T 2zoo_A 60 SFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGG---GAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIAN 136 (442)
T ss_dssp CBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG---GGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred CcEEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCC---CCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhC
Confidence 346788999999988543 46655311000110 00001122333 2 345544 99999994 3446668
Q ss_pred CCEEEEEe
Q 039717 123 GLKLAVDA 130 (131)
Q Consensus 123 GmKl~I~V 130 (131)
||.-.+.|
T Consensus 137 Gl~G~~iv 144 (442)
T 2zoo_A 137 GMYGLILV 144 (442)
T ss_dssp TCEEEEEE
T ss_pred ccEEEEEE
Confidence 88766654
No 63
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=48.10 E-value=6.5 Score=27.99 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=26.2
Q ss_pred eEEEecCCCCcccccccccCC-CeeeeCCEEEEEe
Q 039717 36 STFTVGDTSGWTYNIQSWANG-KQFKAGDTLIFNY 69 (131)
Q Consensus 36 ~~~~VG~~~gW~~~y~~Wa~~-~~f~vGD~LvF~y 69 (131)
.+.+|||+.| .+.++.|-.. ..++.||++.+..
T Consensus 64 ~~~lVgDeTG-~I~ftlW~e~~~~l~~Gd~v~i~n 97 (145)
T 1wjj_A 64 VECLIGDETG-CILFTARNDQVDLMKPGATVILRN 97 (145)
T ss_dssp EEEEEECSSC-EEEEEECTTHHHHTCTTCEEEEEE
T ss_pred EEEEEEcCCc-EEEEEEecCCcCcCCCCCEEEEec
Confidence 3579999988 5678889864 4588999999865
No 64
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=44.25 E-value=8.6 Score=25.00 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=23.7
Q ss_pred EEEecCCCCcccccccccCCC--eeeeCCEEEE
Q 039717 37 TFTVGDTSGWTYNIQSWANGK--QFKAGDTLIF 67 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~Wa~~~--~f~vGD~LvF 67 (131)
...++|+.| .+..+.|-+.. .+++||.+.+
T Consensus 41 ~~~l~DeTG-~I~~tlW~~~~~~~i~~Gdvv~i 72 (97)
T 3e0e_A 41 SLFLKDDTG-SIRGTLWNELADFEVKKGDIAEV 72 (97)
T ss_dssp EEEEEETTE-EEEEEEEGGGGGCCCCTTCEEEE
T ss_pred EEEEECCCC-cEEEEEECCccccccCCCCEEEE
Confidence 577899888 77777786552 6999999988
No 65
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=44.06 E-value=10 Score=24.58 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=16.7
Q ss_pred cccccCCCeeeeCCEEEEEecC
Q 039717 50 IQSWANGKQFKAGDTLIFNYDA 71 (131)
Q Consensus 50 y~~Wa~~~~f~vGD~LvF~y~~ 71 (131)
..+.+.-..+++||.+.|.+..
T Consensus 53 v~~~~~l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 53 ITPQTKMSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp CCTTCEECCCCTTCEEEEEEEE
T ss_pred cCChhhhhcCCCCCEEEEEEEE
Confidence 3444455789999999999964
No 66
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=43.27 E-value=17 Score=23.06 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.0
Q ss_pred CCCeeeeCCEEEEEecCC
Q 039717 55 NGKQFKAGDTLIFNYDAS 72 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~ 72 (131)
.+.+|.+||.|+|--+.+
T Consensus 26 ~rN~f~~GD~iEi~~P~g 43 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEI 43 (89)
T ss_dssp ESSCBCTTCEEEEESTTS
T ss_pred EcCCcCCCCEEEEEcCCC
Confidence 578999999999886544
No 67
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=39.73 E-value=27 Score=26.68 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=47.8
Q ss_pred Cccccccccc---CCCeeeeCCEEEEEecC-C----CceEEE------E-cCCCCCCCCCCCCC----ccccCCC-cEEE
Q 039717 45 GWTYNIQSWA---NGKQFKAGDTLIFNYDA-S----IHNVAV------V-DGNNYQSCRASPTS----KSFSSGK-DQIK 104 (131)
Q Consensus 45 gW~~~y~~Wa---~~~~f~vGD~LvF~y~~-~----~H~V~~------V-~~~~y~~C~~~~~~----~~~~~G~-~~v~ 104 (131)
-|.+|-..|. ...+++.||++.|...+ + .|.+.. | ..... ...+. .....|. ..+.
T Consensus 182 ~~~iNG~~~~~~~~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG~~f~v~~~g~~----~~~~~~~Dtv~v~pg~~~~v~ 257 (288)
T 3gdc_A 182 FYSVNGLPFHFMDFPVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGTM----LTPSEYTDTISQVQGQRGILE 257 (288)
T ss_dssp EEEETTSTTHHHHSCEEEETTCCEEEEEEECCCSSSEEEEEETTCCEEEEETTCC----SSCSEEESEEEEETTCEEEEE
T ss_pred eEEECcccccccCcccccCCCCEEEEEEEeCCCCCcceeEEEcCCEEEEEcCCCc----cCCCceeeEEEeCCCceEEEE
Confidence 3555544443 35788999999987743 2 255432 2 11111 00111 0112232 2344
Q ss_pred c--C-CCceEEEcCCCCCCcCCCEEEEEe
Q 039717 105 L--S-KGRNYFICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 105 L--~-~G~~yFic~~~~HC~~GmKl~I~V 130 (131)
+ + +|.+.|.|-...|=++||.-.+.|
T Consensus 258 ~~~~~pG~~~~hCH~~~H~~~GM~~~~~V 286 (288)
T 3gdc_A 258 LRFPYPGKFMFHAHKTEFAELGWMGFFEV 286 (288)
T ss_dssp ECCCSCEEEEEECSSHHHHTTTCEEEEEE
T ss_pred EECCCCEEEEEEecChHHHhcCCCEEEEE
Confidence 4 3 499999999999999999888877
No 68
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=39.65 E-value=13 Score=23.54 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=14.9
Q ss_pred ccCCCeeeeCCEEEEEecC
Q 039717 53 WANGKQFKAGDTLIFNYDA 71 (131)
Q Consensus 53 Wa~~~~f~vGD~LvF~y~~ 71 (131)
-+.-..+++||.+.|.+..
T Consensus 48 ~~~l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 48 QTKMSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp TCEECCCCTTCEEEEEEEE
T ss_pred hhhhhcCCCCCEEEEEEEE
Confidence 3344779999999999964
No 69
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=38.30 E-value=8.1 Score=26.43 Aligned_cols=13 Identities=54% Similarity=0.828 Sum_probs=10.8
Q ss_pred CCeeeeCCEEEEE
Q 039717 56 GKQFKAGDTLIFN 68 (131)
Q Consensus 56 ~~~f~vGD~LvF~ 68 (131)
.+.+++||.|+|+
T Consensus 32 ~~~i~vGD~I~f~ 44 (113)
T 1xne_A 32 LKDIKRGDKIIFN 44 (113)
T ss_dssp TTTCCTTCEEEET
T ss_pred hhccCCCCEEEEc
Confidence 3678999999994
No 70
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=36.96 E-value=11 Score=26.57 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=28.8
Q ss_pred Ccc-cccccccCCCeeeeCCEEEEEecC-----------CCceEEEEcCCCCCC
Q 039717 45 GWT-YNIQSWANGKQFKAGDTLIFNYDA-----------SIHNVAVVDGNNYQS 86 (131)
Q Consensus 45 gW~-~~y~~Wa~~~~f~vGD~LvF~y~~-----------~~H~V~~V~~~~y~~ 86 (131)
||. +||..-..=+..++||.+.|.-++ +.--+.+|.++.|..
T Consensus 20 g~~GVn~~arn~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~D 73 (145)
T 2hd9_A 20 NVWGVPKKHKNTLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVD 73 (145)
T ss_dssp CEEEECGGGHHHHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEEC
T ss_pred CccccCHHHHHHHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEeC
Confidence 454 777766555789999999887652 334566886676664
No 71
>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}
Probab=32.35 E-value=34 Score=25.06 Aligned_cols=29 Identities=7% Similarity=0.062 Sum_probs=21.1
Q ss_pred ccccCCCeeeeCCEEEEEecCCCceEEEE
Q 039717 51 QSWANGKQFKAGDTLIFNYDASIHNVAVV 79 (131)
Q Consensus 51 ~~Wa~~~~f~vGD~LvF~y~~~~H~V~~V 79 (131)
.-|.++.+|..||.|.|.|.++....+.+
T Consensus 132 ~~F~~~~~~~kGd~i~~~~~p~~~l~~~~ 160 (205)
T 4doo_A 132 SLFKDEYKIPRNSTIDLTKDPGHVLSVAI 160 (205)
T ss_dssp GGGTTCCCCCTTCEEEEEEETTTEEEEEE
T ss_pred HHhccCCCCCCCCEEEEEEcCCCcEEEEE
Confidence 34566778999999999998764433433
No 72
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}
Probab=30.41 E-value=52 Score=25.25 Aligned_cols=26 Identities=12% Similarity=0.312 Sum_probs=18.8
Q ss_pred CCCeeeeCCEEEEEecCCCceEEEEc
Q 039717 55 NGKQFKAGDTLIFNYDASIHNVAVVD 80 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~~H~V~~V~ 80 (131)
++++|+.||+|.|.|.++..-.+.++
T Consensus 151 ~~~~l~kGs~I~~~~~p~g~l~i~~s 176 (246)
T 4doi_A 151 KEETFPPGSSILFALSPTGSLTVAFS 176 (246)
T ss_dssp TTCEECTTCEEEEEECTTSEEEEEEE
T ss_pred ccCcCCCCCEEEEEEeCCCcEEEEEe
Confidence 35689999999999987633334444
No 73
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=29.84 E-value=15 Score=25.83 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=25.3
Q ss_pred cccccccccCCCeeeeCCEEEEE-----ecC----CCceEEEEcCCCCCC
Q 039717 46 WTYNIQSWANGKQFKAGDTLIFN-----YDA----SIHNVAVVDGNNYQS 86 (131)
Q Consensus 46 W~~~y~~Wa~~~~f~vGD~LvF~-----y~~----~~H~V~~V~~~~y~~ 86 (131)
|-+||..-..=+..++||.+.|. .++ +.--+.+|.++.|..
T Consensus 25 wGVn~~arn~lr~Mk~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D 74 (147)
T 2p5d_A 25 WGVAERYKNTINKVKVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD 74 (147)
T ss_dssp EEECGGGHHHHTTCCTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred eecCHHHHHHHHhCCCCCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence 33565443333678999999887 322 234567886666653
No 74
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=27.84 E-value=1.1e+02 Score=23.05 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=38.8
Q ss_pred CCeeeeCCEEEEEecCC---CceEEEE--cCCCCCCCCCCCCCccccCCCc---EEEcCC-CceEEEcCCC---CCCcCC
Q 039717 56 GKQFKAGDTLIFNYDAS---IHNVAVV--DGNNYQSCRASPTSKSFSSGKD---QIKLSK-GRNYFICSIP---GHCEAG 123 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~~---~H~V~~V--~~~~y~~C~~~~~~~~~~~G~~---~v~L~~-G~~yFic~~~---~HC~~G 123 (131)
..+++.||++++.+.+. .|++..= .....|.= +.........|.. .|+.++ |++||-|-.. .|=..|
T Consensus 67 ~i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~-p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 145 (288)
T 3gdc_A 67 TLWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGT-PGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKG 145 (288)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCC-TTSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred cEEEeCCCEEEEEEEeCCCCcccEEeccccccccCCC-CCccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCc
Confidence 46788999999988542 4444431 11111100 0000011122332 355555 9999999875 355678
Q ss_pred CEEEEEe
Q 039717 124 LKLAVDA 130 (131)
Q Consensus 124 mKl~I~V 130 (131)
|--.+.|
T Consensus 146 l~G~liV 152 (288)
T 3gdc_A 146 LYGGFIV 152 (288)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 8665544
No 75
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=27.64 E-value=68 Score=24.71 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=39.9
Q ss_pred CCeeeeCCEEEEEecCC-----CceEEEEcCCCCCCCCCCCCCccccCCCc---EEEcCC-CceEEEcCCCC----CCcC
Q 039717 56 GKQFKAGDTLIFNYDAS-----IHNVAVVDGNNYQSCRASPTSKSFSSGKD---QIKLSK-GRNYFICSIPG----HCEA 122 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G~~---~v~L~~-G~~yFic~~~~----HC~~ 122 (131)
..+++.||++++++.+. .|.+..=.....+ +. .+......|.. .|++++ |++||-|...+ |=..
T Consensus 72 ~i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~--~~-~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~ 148 (340)
T 2bw4_A 72 LMVVHENDYVELRLINPDTNTLLHNIDFHAATGAL--GG-GALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTS 148 (340)
T ss_dssp EEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--GG-GGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred cEEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCC--CC-ccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhC
Confidence 36778999999988653 3655431111000 00 11111233432 355555 99999998764 5567
Q ss_pred CCEEEEEe
Q 039717 123 GLKLAVDA 130 (131)
Q Consensus 123 GmKl~I~V 130 (131)
||.-.+.|
T Consensus 149 Gl~G~~iV 156 (340)
T 2bw4_A 149 GMNGAIMV 156 (340)
T ss_dssp TCEEEEEE
T ss_pred cCEEEEEE
Confidence 88665544
No 76
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=27.23 E-value=59 Score=20.19 Aligned_cols=46 Identities=9% Similarity=0.221 Sum_probs=27.7
Q ss_pred CCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCc--cccCCCcEEEc
Q 039717 55 NGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSK--SFSSGKDQIKL 105 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~--~~~~G~~~v~L 105 (131)
...+|.+||++.=+| +|.+.-+++.-.+++ ..+++. .|.+ .+..+|
T Consensus 6 p~~~~~vgd~VmaRW-~Gd~~yYparI~Si~---s~~~~Y~V~fKd-gT~e~L 53 (66)
T 2l8d_A 6 PNRKYADGEVVMGRW-PGSVLYYEVQVTSYD---DASHLYTVKYKD-GTELAL 53 (66)
T ss_dssp SSSSSCSSCEEEEEC-TTSSCEEEEEEEEEE---TTTTEEEEEETT-SCEEEE
T ss_pred CceEeecCCEEEEEc-CCCccceEEEEEEec---cCCceEEEEecC-CCEEee
Confidence 356789999999999 677666655333333 334442 4556 344444
No 77
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=27.03 E-value=24 Score=23.30 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=22.9
Q ss_pred EEEecCCCCcccccccccCC--CeeeeCCEEEE
Q 039717 37 TFTVGDTSGWTYNIQSWANG--KQFKAGDTLIF 67 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~Wa~~--~~f~vGD~LvF 67 (131)
+.+++|+.| .+..+-|-+. ..+.+||.+.|
T Consensus 44 ~~~l~D~TG-~IrvtlW~~~a~~~l~~Gdvv~i 75 (105)
T 3dm3_A 44 SFIVRDETG-SIRVTLWDNLTDIDVGRGDYVRV 75 (105)
T ss_dssp EEEEEETTE-EEEEEEEGGGGGSCCCTTCEEEE
T ss_pred EEEEECCCC-cEEEEEECcccccccCCCCEEEE
Confidence 567888877 6667777654 37999999998
No 78
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=26.40 E-value=30 Score=23.69 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=27.0
Q ss_pred eEEEecCC---CCccc-------------ccccccCCCeeeeCCEEEEEec
Q 039717 36 STFTVGDT---SGWTY-------------NIQSWANGKQFKAGDTLIFNYD 70 (131)
Q Consensus 36 ~~~~VG~~---~gW~~-------------~y~~Wa~~~~f~vGD~LvF~y~ 70 (131)
..|+||+. ..|+. .+..|.....+..|..++|||-
T Consensus 24 ~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyv 74 (131)
T 2z0b_A 24 VFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYF 74 (131)
T ss_dssp EEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEE
T ss_pred EEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEE
Confidence 57899983 57983 3457888788888889999994
No 79
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=25.88 E-value=28 Score=24.37 Aligned_cols=18 Identities=17% Similarity=0.229 Sum_probs=10.0
Q ss_pred eCCEEEEEecCCCceEEE
Q 039717 61 AGDTLIFNYDASIHNVAV 78 (131)
Q Consensus 61 vGD~LvF~y~~~~H~V~~ 78 (131)
-|+.+.|.-..+.++-+.
T Consensus 77 ~gK~V~~~S~AgY~S~V~ 94 (126)
T 4dny_A 77 EGKMVRFVSSAGYSSTVF 94 (126)
T ss_dssp TTCEEEEEEECSSCEEEE
T ss_pred CCCEEEEEEecCccEEEE
Confidence 466666666555544443
No 80
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=24.72 E-value=21 Score=20.10 Aligned_cols=16 Identities=19% Similarity=0.694 Sum_probs=13.3
Q ss_pred cccCCCeeeeCCEEEE
Q 039717 52 SWANGKQFKAGDTLIF 67 (131)
Q Consensus 52 ~Wa~~~~f~vGD~LvF 67 (131)
.|..+....+||.+.+
T Consensus 1 ~W~~~~~Y~~Gd~Vty 16 (45)
T 1ed7_A 1 AWQVNTAYTAGQLVTY 16 (45)
T ss_dssp CCCSSEEECTTCCEEE
T ss_pred CccCCceEcCCCEEEE
Confidence 4888999999999754
No 81
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=23.70 E-value=30 Score=22.96 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=23.6
Q ss_pred EEEecCCCCcccccccccCC-CeeeeCCEEEEE
Q 039717 37 TFTVGDTSGWTYNIQSWANG-KQFKAGDTLIFN 68 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~Wa~~-~~f~vGD~LvF~ 68 (131)
+.+++|+.| .+..+-|-.. ..|+.||++.++
T Consensus 41 ~~~l~D~TG-~I~~tlW~~~~~~~~~G~vv~i~ 72 (119)
T 1o7i_A 41 EAIVGDETG-RVKLTLWGKHAGSIKEGQVVKIE 72 (119)
T ss_dssp EEEEEETTE-EEEEEEEGGGTTCCCTTCEEEEE
T ss_pred EEEEEeCCC-EEEEEEECChhhcCCCCCEEEEE
Confidence 567888888 3566677543 569999999998
No 82
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=23.35 E-value=73 Score=23.65 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.8
Q ss_pred CCeeeeCCEEEEEecCCCce
Q 039717 56 GKQFKAGDTLIFNYDASIHN 75 (131)
Q Consensus 56 ~~~f~vGD~LvF~y~~~~H~ 75 (131)
+++|+.||+|.|.|.++...
T Consensus 135 ~~~~~~G~~I~~~~~p~~G~ 154 (208)
T 4dok_A 135 SKYFKANSVITYHFSAKDGI 154 (208)
T ss_dssp TCEECTTCEEEEEECSSSCC
T ss_pred cCCCCCCCEEEEEEeCCCCe
Confidence 46899999999999877554
No 83
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=21.97 E-value=1.8e+02 Score=22.98 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=47.5
Q ss_pred eEEEecCCCCcccccccc----cCCCeeeeCCEEEEEecCC--CceEEEEcCCCCCCCCCCCCCcc-ccCCCc---EEEc
Q 039717 36 STFTVGDTSGWTYNIQSW----ANGKQFKAGDTLIFNYDAS--IHNVAVVDGNNYQSCRASPTSKS-FSSGKD---QIKL 105 (131)
Q Consensus 36 ~~~~VG~~~gW~~~y~~W----a~~~~f~vGD~LvF~y~~~--~H~V~~V~~~~y~~C~~~~~~~~-~~~G~~---~v~L 105 (131)
+..++|-.=.|.+.|.+- .+...+.+|..+.|.-++. .|+-.. .+- .++. --.|.. .++.
T Consensus 128 tIkVig~QW~W~f~Ypd~~i~t~n~l~lP~g~~V~~~lTS~DViHsf~I-P~l---------g~k~DaiPGr~n~~~~~~ 197 (315)
T 1fft_B 128 TIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFI-PRL---------GSQIYAMAGMQTRLHLIA 197 (315)
T ss_dssp EEEEECCTTSCEEECTTTCCEEESBCCCCSSSEEEEEECBSSSCEEEEE-GGG---------TEEEEECBTSCEEEEEEC
T ss_pred eEEEeeeeccEEEecCCCcccccceEEEeCCCEEEEEEEeCCccceeee-ccc---------CcEEeecCCcceeeEEec
Confidence 345566544567777543 2456778889988888643 344432 111 1110 112332 3455
Q ss_pred CC-CceEEEcCCCCCCcC---CCEEEEEe
Q 039717 106 SK-GRNYFICSIPGHCEA---GLKLAVDA 130 (131)
Q Consensus 106 ~~-G~~yFic~~~~HC~~---GmKl~I~V 130 (131)
++ |.+|..|+. -|-. .|++.|.|
T Consensus 198 ~~~G~y~g~CsE--~CG~~Hs~M~~~v~v 224 (315)
T 1fft_B 198 NEPGTYDGISAS--YSGPGFSGMKFKAIA 224 (315)
T ss_dssp CSCBCCEEBCCS--CCSTTTTTCCEECCB
T ss_pred CCCeEEEEeccc--cchhhHHhccceEEE
Confidence 55 999999986 5655 48887765
No 84
>2y7l_A NT_ALS9-2, agglutinin-like ALS9 protein; cell adhesion, adhesin, peptide binding protein; 1.49A {Candida albicans} PDB: 2y7m_A 2y7n_A 2y7o_A 2ylh_A
Probab=20.99 E-value=32 Score=27.54 Aligned_cols=35 Identities=29% Similarity=0.615 Sum_probs=25.7
Q ss_pred CCCeeeeCCEE------EEEecCCCceEEEE-cCCCCCCCCC
Q 039717 55 NGKQFKAGDTL------IFNYDASIHNVAVV-DGNNYQSCRA 89 (131)
Q Consensus 55 ~~~~f~vGD~L------vF~y~~~~H~V~~V-~~~~y~~C~~ 89 (131)
++...+.||+. ||||...+-.|... +...|..|+.
T Consensus 41 dgs~v~~GDtFtL~MP~VfKf~~~~t~v~L~a~G~~yAtC~~ 82 (312)
T 2y7l_A 41 NSTTADPGDTFTLILPCVFKFITTQTSVDLTADGVSYATCDF 82 (312)
T ss_dssp ETTTCCTTCEEEEEEETEEEESSSCSEEEEEETTEEEEEEEE
T ss_pred ccCcCCCCCEEEEecccEEEEccCCceEEEecCCeEEEEEec
Confidence 45788999998 78888777666543 6666777775
No 85
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=20.98 E-value=16 Score=28.20 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEcC-CCceEEEcCCCCCCcCCCEEEEEe
Q 039717 103 IKLS-KGRNYFICSIPGHCEAGLKLAVDA 130 (131)
Q Consensus 103 v~L~-~G~~yFic~~~~HC~~GmKl~I~V 130 (131)
++.+ +|.++|.|-...|-..||...+.|
T Consensus 270 ~~~~~pG~~~~hch~~~H~~~GM~~~~~V 298 (306)
T 1sdd_A 270 MTVSPEGRWTIASLIPRHFQAGMQAYIDI 298 (306)
T ss_dssp ------CCCCCBCCSTTTGGGTCBCCC--
T ss_pred EEcCCCeEEEEEeCChHHHhcCCeEEEEE
Confidence 3444 499999999999999999876655
No 86
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=20.56 E-value=39 Score=21.97 Aligned_cols=32 Identities=22% Similarity=0.550 Sum_probs=22.4
Q ss_pred EEEecCCCCcccccccccCC----CeeeeCCEEEEEe
Q 039717 37 TFTVGDTSGWTYNIQSWANG----KQFKAGDTLIFNY 69 (131)
Q Consensus 37 ~~~VG~~~gW~~~y~~Wa~~----~~f~vGD~LvF~y 69 (131)
..+++|+.| .+..+-|.+. ..|++||.+.|+=
T Consensus 46 ~~~l~D~TG-~I~~t~w~~~~~~~~~l~~G~vv~i~g 81 (115)
T 2k50_A 46 NVIIADDTG-ELRAVFWTENIKLLKKFREGDVIRIKD 81 (115)
T ss_dssp EEEEEETTE-EEEEEEETTGGGGGGTCCTTSEEEEEE
T ss_pred EEEEEeCCC-eEEEEEeCchhhhhhcCCCCCEEEEEe
Confidence 466788877 6566666544 3688899888765
No 87
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.16 E-value=88 Score=19.51 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=27.0
Q ss_pred CCCeeeeCCEEEEEecCCCceEEEEcCCCCCCCCCCCCCc--cccCCCcEEEc
Q 039717 55 NGKQFKAGDTLIFNYDASIHNVAVVDGNNYQSCRASPTSK--SFSSGKDQIKL 105 (131)
Q Consensus 55 ~~~~f~vGD~LvF~y~~~~H~V~~V~~~~y~~C~~~~~~~--~~~~G~~~v~L 105 (131)
...+|.+||++.=+|. +.+.-+++.-.+++ ..+++. .|.+ .+..+|
T Consensus 9 p~~~f~vgd~VmaRW~-Gd~~yYparItSit---s~~~~Y~VkfKd-gT~e~L 56 (68)
T 2dig_A 9 PSRKFADGEVVRGRWP-GSSLYYEVEILSHD---STSQLYTVKYKD-GTELEL 56 (68)
T ss_dssp CCCSSCSSCEEEEECT-TTCCEEEEEEEEEE---TTTTEEEEECTT-SCEEEE
T ss_pred CceEeecCCEEEEEcc-CCccceEEEEEEec---cCCceEEEEecC-CCEEEe
Confidence 3467889999998997 66665554333333 334442 4556 344444
Done!