BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039719
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
Length = 151
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 75/145 (51%), Gaps = 13/145 (8%)
Query: 35 QSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMK 94
+S FD + + F I+ G A AR DW ETP HV D+P +K
Sbjct: 6 RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 65
Query: 95 KDNVKIEVEENRVLRVSGER------------KTEWTFGKFWRQFRMHMSTDLDHIKAHT 142
K+ VK+EVE+ VL VSGER + E + GKF R+FR+ ++ +KA
Sbjct: 66 KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL 125
Query: 143 ENGILRVTVPKLAEEKKRQPEVINI 167
ENG+L VTVPK AE KK + + I I
Sbjct: 126 ENGVLTVTVPK-AEVKKPEVKAIQI 149
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 12/95 (12%)
Query: 73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGER------------KTEWTF 120
AR DW ETP HV D+P +KK+ VK+EVE+ VL VSGER + E +
Sbjct: 2 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSS 61
Query: 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLA 155
GKF R+FR+ ++ +KA ENG+L VTVPK A
Sbjct: 62 GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAA 96
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
Length = 93
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 56/93 (60%), Gaps = 12/93 (12%)
Query: 73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGER------------KTEWTF 120
AR DW ETP HV D+P +KK+ VK+EVE+ VL VSGER + E +
Sbjct: 1 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSS 60
Query: 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPK 153
GKF R+FR+ ++ +KA ENG+L VTVPK
Sbjct: 61 GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWT------------ 119
+ R D E V+ D+P + +++++++ +L + GERK+E +
Sbjct: 4 VPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERR 62
Query: 120 FGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPK 153
+G F R+F + S D D I A NG+L + +PK
Sbjct: 63 YGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 96
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWT------------ 119
+ R D E V+ D+P + +++++++ +L + GERK+E +
Sbjct: 7 VPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERR 65
Query: 120 FGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPK 153
+G F R+F + S D D I A NG+L + +PK
Sbjct: 66 YGSFHRRFALPDSADADGITAAGRNGVLEIRIPK 99
>pdb|3BBO|I Chain I, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 223
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 12/48 (25%)
Query: 84 HVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKF------WR 125
H + + IP D++K++VEEN + VSG K+E G+F WR
Sbjct: 154 HPVKMQIP----DSLKVKVEENTRITVSGYDKSE--IGQFAATVRKWR 195
>pdb|4HG6|B Chain B, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 707
Score = 27.3 bits (59), Expect = 4.4, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 4 PRILAMTMLFLVMAATLTNMASQA----NALTPYTQSPFFDMMFPMTEESFRVLEQT 56
PR+LA+T+L ++ + A+ A NAL P +P +M P+ E ++ QT
Sbjct: 502 PRLLALTLLPSTVSRLVERPATPAGPPANALAPLGAAPGEGVMPPLVESNWSDRAQT 558
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 13 FLVMAATLTNMASQANALTPYT-QSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLA 71
F T T M + L P +SP ++ + F P++I +G H + +A
Sbjct: 18 FFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGF-----MPISIIEGDQHIKVIA 72
Query: 72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHM 131
E ++ + + + K + + E R++ + E +R ++
Sbjct: 73 WLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEE-----IYRTIKLPA 127
Query: 132 STDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINID 168
+ ++ A ENG+L V +PK K+ INI+
Sbjct: 128 TVKEENASAKFENGVLSVILPKAESSIKKG---INIE 161
>pdb|1K82|A Chain A, Crystal Structure Of E.Coli Formamidopyrimidine-Dna
Glycosylase (Fpg) Covalently Trapped With Dna
pdb|1K82|B Chain B, Crystal Structure Of E.Coli Formamidopyrimidine-Dna
Glycosylase (Fpg) Covalently Trapped With Dna
pdb|1K82|C Chain C, Crystal Structure Of E.Coli Formamidopyrimidine-Dna
Glycosylase (Fpg) Covalently Trapped With Dna
pdb|1K82|D Chain D, Crystal Structure Of E.Coli Formamidopyrimidine-Dna
Glycosylase (Fpg) Covalently Trapped With Dna
Length = 268
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 41 MMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWM-----ETPTIHVITLDIPVMKK 95
+ +P++EE +R+ +Q L++ + A + L W+ + ++ ++ ++P K
Sbjct: 32 LRWPVSEEIYRLSDQPVLSVQRRAKY--LLLELPEGWIIIHLGMSGSLRILPEELPPEKH 89
Query: 96 DNVKIEVEENRVLRVSGERK 115
D+V + + +VLR + R+
Sbjct: 90 DHVDLVMSNGKVLRYTDPRR 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.129 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,119,108
Number of Sequences: 62578
Number of extensions: 192640
Number of successful extensions: 438
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 14
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)