Query 039719
Match_columns 186
No_of_seqs 198 out of 1586
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 12:34:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10743 heat shock protein Ib 99.9 2E-26 4.3E-31 178.0 12.7 94 71-168 33-137 (137)
2 PRK11597 heat shock chaperone 99.9 2.2E-26 4.9E-31 178.6 12.4 99 70-172 30-139 (142)
3 COG0071 IbpA Molecular chapero 99.9 7.4E-25 1.6E-29 170.5 13.3 97 70-168 38-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 2E-23 4.4E-28 150.4 10.6 80 74-153 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 7.7E-23 1.7E-27 149.1 13.0 92 76-168 1-102 (102)
6 cd06497 ACD_alphaA-crystallin_ 99.9 1.9E-22 4.2E-27 144.2 11.0 77 76-153 4-86 (86)
7 cd06479 ACD_HspB7_like Alpha c 99.9 2.4E-22 5.2E-27 142.3 9.7 77 76-153 2-81 (81)
8 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 6.9E-22 1.5E-26 140.4 10.6 77 76-153 1-83 (83)
9 cd06471 ACD_LpsHSP_like Group 99.9 6.6E-22 1.4E-26 142.5 10.6 79 73-153 1-93 (93)
10 cd06498 ACD_alphaB-crystallin_ 99.9 9.3E-22 2E-26 140.1 10.7 77 77-154 2-84 (84)
11 cd06475 ACD_HspB1_like Alpha c 99.9 1.6E-21 3.5E-26 139.4 10.6 77 75-152 3-85 (86)
12 cd06470 ACD_IbpA-B_like Alpha- 99.9 4.2E-21 9.1E-26 138.1 11.4 78 73-153 1-90 (90)
13 cd06476 ACD_HspB2_like Alpha c 99.9 3.6E-21 7.8E-26 136.8 10.8 76 77-153 2-83 (83)
14 cd06477 ACD_HspB3_Like Alpha c 99.8 2.7E-20 5.8E-25 132.4 10.4 73 79-152 4-82 (83)
15 cd06481 ACD_HspB9_like Alpha c 99.8 3.7E-20 8.1E-25 132.6 9.6 74 79-153 4-87 (87)
16 cd06526 metazoan_ACD Alpha-cry 99.8 7.6E-20 1.7E-24 129.4 9.8 72 81-153 6-83 (83)
17 cd06482 ACD_HspB10 Alpha cryst 99.8 1.6E-19 3.4E-24 129.5 10.0 72 80-152 6-86 (87)
18 cd06464 ACD_sHsps-like Alpha-c 99.8 6.3E-19 1.4E-23 123.8 10.1 77 76-153 1-88 (88)
19 cd06480 ACD_HspB8_like Alpha-c 99.7 5.2E-17 1.1E-21 117.3 9.4 75 77-152 10-90 (91)
20 KOG3591 Alpha crystallins [Pos 99.7 6.3E-16 1.4E-20 123.7 11.9 101 72-174 62-168 (173)
21 KOG0710 Molecular chaperone (s 99.7 1.5E-16 3.3E-21 129.6 6.1 100 69-168 81-195 (196)
22 cd00298 ACD_sHsps_p23-like Thi 99.5 1.1E-13 2.5E-18 93.5 10.1 76 77-153 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 1.3E-11 2.8E-16 85.4 8.9 71 77-156 1-71 (78)
24 cd06463 p23_like Proteins cont 99.1 1.3E-09 2.8E-14 75.1 9.2 76 77-156 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.0 1.5E-09 3.2E-14 86.8 9.8 79 71-157 90-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 1.8E-08 3.9E-13 70.3 8.1 77 76-156 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.6 2.8E-06 6E-11 57.8 11.8 77 73-153 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.2 1.8E-05 3.8E-10 58.3 10.2 78 73-155 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.2 8.9E-06 1.9E-10 70.2 8.8 65 81-152 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.1 2.3E-05 4.9E-10 55.0 8.5 76 76-155 1-76 (84)
31 cd06467 p23_NUDC_like p23_like 97.9 0.0001 2.2E-09 51.4 8.7 75 75-156 1-77 (85)
32 cd06488 p23_melusin_like p23_l 97.9 0.00019 4.1E-09 50.9 9.6 79 74-156 2-80 (87)
33 cd06468 p23_CacyBP p23_like do 97.8 0.00031 6.7E-09 49.8 10.3 79 74-156 3-85 (92)
34 cd06493 p23_NUDCD1_like p23_NU 97.8 0.00029 6.4E-09 49.6 9.3 75 75-156 1-77 (85)
35 cd00237 p23 p23 binds heat sho 97.5 0.0024 5.2E-08 47.2 10.4 79 72-156 1-79 (106)
36 cd06494 p23_NUDCD2_like p23-li 97.4 0.0021 4.5E-08 46.5 9.4 77 72-156 5-83 (93)
37 PLN03088 SGT1, suppressor of 96.9 0.0061 1.3E-07 53.8 9.0 81 72-156 156-236 (356)
38 KOG1309 Suppressor of G2 allel 96.6 0.009 1.9E-07 48.2 7.1 81 72-156 3-83 (196)
39 cd06490 p23_NCB5OR p23_like do 96.1 0.12 2.7E-06 36.5 9.9 76 75-156 1-80 (87)
40 cd06492 p23_mNUDC_like p23-lik 95.9 0.11 2.5E-06 36.8 9.0 73 77-156 3-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 95.4 0.31 6.8E-06 35.7 10.0 77 72-155 4-86 (102)
42 COG5091 SGT1 Suppressor of G2 88.3 0.38 8.2E-06 41.6 2.5 111 72-185 176-292 (368)
43 KOG2265 Nuclear distribution p 80.5 16 0.00034 29.5 8.4 80 70-156 16-97 (179)
44 PF13349 DUF4097: Domain of un 79.5 25 0.00054 26.7 9.3 74 72-150 65-147 (166)
45 KOG3158 HSP90 co-chaperone p23 79.0 6.8 0.00015 31.6 5.8 81 70-156 5-85 (180)
46 PF14913 DPCD: DPCD protein fa 77.4 21 0.00047 29.2 8.4 79 71-155 85-170 (194)
47 cd06526 metazoan_ACD Alpha-cry 74.4 5.1 0.00011 27.5 3.7 32 82-113 50-82 (83)
48 cd06482 ACD_HspB10 Alpha cryst 73.8 8.2 0.00018 27.3 4.6 35 121-156 8-42 (87)
49 KOG1667 Zn2+-binding protein M 71.6 19 0.00041 31.0 7.0 84 71-157 213-296 (320)
50 cd06471 ACD_LpsHSP_like Group 70.3 7.3 0.00016 27.2 3.7 30 82-112 62-91 (93)
51 cd06464 ACD_sHsps-like Alpha-c 70.2 8.1 0.00018 25.9 3.9 33 80-113 54-87 (88)
52 cd06480 ACD_HspB8_like Alpha-c 69.5 9.8 0.00021 27.2 4.2 31 82-112 58-89 (91)
53 PRK10743 heat shock protein Ib 66.7 21 0.00046 27.3 5.9 28 127-155 51-78 (137)
54 PRK05518 rpl6p 50S ribosomal p 66.4 25 0.00054 28.3 6.5 45 95-152 13-57 (180)
55 cd06470 ACD_IbpA-B_like Alpha- 66.4 15 0.00032 25.7 4.7 36 121-157 11-46 (90)
56 PF00011 HSP20: Hsp20/alpha cr 65.1 12 0.00026 26.3 4.0 35 81-116 54-89 (102)
57 cd06472 ACD_ScHsp26_like Alpha 64.4 11 0.00025 26.3 3.8 31 81-112 59-90 (92)
58 cd06477 ACD_HspB3_Like Alpha c 64.4 17 0.00038 25.4 4.6 33 122-155 8-40 (83)
59 cd06476 ACD_HspB2_like Alpha c 63.7 17 0.00037 25.3 4.5 33 121-154 7-39 (83)
60 PF00347 Ribosomal_L6: Ribosom 63.6 14 0.0003 24.7 3.9 47 95-153 2-48 (77)
61 TIGR03653 arch_L6P archaeal ri 62.8 37 0.00081 27.0 6.8 45 95-152 7-51 (170)
62 PF08308 PEGA: PEGA domain; I 62.5 28 0.0006 22.8 5.2 40 74-113 26-66 (71)
63 PF12992 DUF3876: Domain of un 62.2 32 0.00069 24.9 5.7 41 70-111 23-68 (95)
64 cd06478 ACD_HspB4-5-6 Alpha-cr 62.0 22 0.00048 24.6 4.8 33 121-154 7-39 (83)
65 cd06497 ACD_alphaA-crystallin_ 61.9 21 0.00045 25.0 4.7 33 121-154 10-42 (86)
66 KOG3591 Alpha crystallins [Pos 61.3 11 0.00024 30.2 3.5 42 87-130 120-162 (173)
67 KOG3260 Calcyclin-binding prot 61.1 31 0.00067 28.2 6.0 78 75-156 77-155 (224)
68 TIGR03654 L6_bact ribosomal pr 60.8 38 0.00083 27.0 6.6 44 95-152 11-54 (175)
69 cd06469 p23_DYX1C1_like p23_li 60.3 23 0.0005 23.5 4.6 34 82-116 36-70 (78)
70 cd06479 ACD_HspB7_like Alpha c 59.9 23 0.00051 24.6 4.6 33 121-154 8-40 (81)
71 PRK11597 heat shock chaperone 58.4 34 0.00074 26.5 5.7 29 126-155 48-76 (142)
72 PRK05498 rplF 50S ribosomal pr 58.1 40 0.00088 26.9 6.3 44 95-152 12-55 (178)
73 PTZ00027 60S ribosomal protein 57.6 35 0.00077 27.7 5.9 47 95-152 13-59 (190)
74 PRK10568 periplasmic protein; 57.4 81 0.0018 25.6 8.1 25 91-116 73-97 (203)
75 PF04972 BON: BON domain; Int 57.3 20 0.00042 23.0 3.7 26 91-117 12-37 (64)
76 PF01954 DUF104: Protein of un 55.3 12 0.00026 24.8 2.3 33 136-170 3-35 (60)
77 CHL00140 rpl6 ribosomal protei 54.6 41 0.00089 26.9 5.8 44 95-152 12-55 (178)
78 cd06498 ACD_alphaB-crystallin_ 54.0 27 0.00059 24.3 4.2 33 121-154 7-39 (84)
79 COG0071 IbpA Molecular chapero 53.7 28 0.00061 26.5 4.6 34 82-116 100-134 (146)
80 cd00298 ACD_sHsps_p23-like Thi 53.6 25 0.00053 22.3 3.7 32 81-113 47-79 (80)
81 cd06481 ACD_HspB9_like Alpha c 53.0 52 0.0011 23.0 5.5 34 121-155 7-40 (87)
82 cd06475 ACD_HspB1_like Alpha c 52.6 39 0.00085 23.5 4.8 34 121-155 10-43 (86)
83 cd06463 p23_like Proteins cont 51.7 38 0.00082 22.1 4.5 35 81-116 40-75 (84)
84 cd01759 PLAT_PL PLAT/LH2 domai 48.2 63 0.0014 24.0 5.5 46 121-172 44-90 (113)
85 PTZ00179 60S ribosomal protein 43.7 76 0.0016 25.7 5.8 46 95-152 12-58 (189)
86 KOG3247 Uncharacterized conser 43.3 11 0.00024 34.4 1.0 77 72-157 3-82 (466)
87 cd06467 p23_NUDC_like p23_like 40.4 63 0.0014 21.7 4.3 30 123-152 10-39 (85)
88 KOG3413 Mitochondrial matrix p 39.3 15 0.00032 28.9 1.0 24 129-152 65-88 (156)
89 COG0097 RplF Ribosomal protein 38.3 1.1E+02 0.0023 24.8 5.8 46 93-151 10-55 (178)
90 PF10766 DUF2592: Protein of u 35.3 36 0.00078 20.8 2.0 14 4-17 4-17 (41)
91 PF13349 DUF4097: Domain of un 32.9 1.4E+02 0.003 22.4 5.6 19 132-150 148-166 (166)
92 PLN02711 Probable galactinol-- 31.4 1E+02 0.0022 30.5 5.4 45 120-167 731-775 (777)
93 PF14730 DUF4468: Domain of un 31.1 1.8E+02 0.004 20.2 5.7 16 138-153 70-85 (91)
94 cd00503 Frataxin Frataxin is a 30.2 53 0.0011 24.0 2.6 17 136-152 28-44 (105)
95 PF01491 Frataxin_Cyay: Fratax 29.1 69 0.0015 23.5 3.1 17 137-153 31-47 (109)
96 cd02175 GH16_lichenase lichena 28.4 1.4E+02 0.003 24.0 5.1 15 118-132 66-80 (212)
97 PF07873 YabP: YabP family; I 27.8 53 0.0011 21.7 2.1 21 93-114 23-43 (66)
98 cd06494 p23_NUDCD2_like p23-li 27.3 1.3E+02 0.0028 21.4 4.2 29 123-151 17-45 (93)
99 PRK00446 cyaY frataxin-like pr 27.0 56 0.0012 23.9 2.3 16 138-153 29-44 (105)
100 PRK14290 chaperone protein Dna 26.5 3.9E+02 0.0085 23.6 8.0 43 126-172 277-319 (365)
101 TIGR03421 FeS_CyaY iron donor 26.4 65 0.0014 23.5 2.5 17 137-153 26-42 (102)
102 PRK11198 LysM domain/BON super 25.7 85 0.0019 24.1 3.2 26 91-117 38-63 (147)
103 PF05455 GvpH: GvpH; InterPro 25.2 2.3E+02 0.0049 22.9 5.6 38 79-117 133-170 (177)
104 COG4004 Uncharacterized protei 24.6 1.8E+02 0.0038 21.1 4.3 33 75-112 26-58 (96)
105 TIGR02892 spore_yabP sporulati 22.4 79 0.0017 22.4 2.2 21 93-114 22-42 (85)
106 PF13620 CarboxypepD_reg: Carb 22.3 1E+02 0.0023 20.2 2.8 29 82-110 48-77 (82)
107 PRK13726 conjugal transfer pil 21.0 1.9E+02 0.0042 23.3 4.5 50 96-152 131-180 (188)
108 TIGR02856 spore_yqfC sporulati 20.9 77 0.0017 22.3 1.9 23 92-115 40-62 (85)
109 PF11033 ComJ: Competence prot 20.8 3.4E+02 0.0075 20.6 5.6 60 80-154 36-97 (125)
110 TIGR03422 mito_frataxin fratax 20.2 74 0.0016 23.0 1.8 14 139-152 30-43 (97)
111 cd02178 GH16_beta_agarase Beta 20.1 2.3E+02 0.0051 23.5 5.0 14 118-131 96-109 (258)
No 1
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.94 E-value=2e-26 Score=178.02 Aligned_cols=94 Identities=18% Similarity=0.311 Sum_probs=82.8
Q ss_pred ccceeEEEE-CCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece----------eeeeEEEEEEEcCCCCCcCceE
Q 039719 71 ALARADWME-TPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE----------WTFGKFWRQFRMHMSTDLDHIK 139 (186)
Q Consensus 71 ~~p~vdi~e-~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~----------~~~~~f~R~~~LP~~vd~~~i~ 139 (186)
..|++||++ ++++|.|+++|||++++||+|++++ +.|+|+|+++.+ +++|+|+|+|.||.+||.++
T Consensus 33 ~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~-- 109 (137)
T PRK10743 33 GYPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG-- 109 (137)
T ss_pred CCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--
Confidence 348899994 8999999999999999999999999 899999997653 47899999999999999994
Q ss_pred EEEeCCEEEEEEeccCcccCCCCeEEEec
Q 039719 140 AHTENGILRVTVPKLAEEKKRQPEVINID 168 (186)
Q Consensus 140 A~~~nGvL~I~lPK~~~~~~~~~k~I~I~ 168 (186)
|+|+||||+|++||..++ ..++|+|+|+
T Consensus 110 A~~~dGVL~I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 110 ANLVNGLLYIDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred CEEeCCEEEEEEeCCCcc-ccCCeEEeeC
Confidence 999999999999997443 2358999985
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.94 E-value=2.2e-26 Score=178.58 Aligned_cols=99 Identities=19% Similarity=0.278 Sum_probs=85.9
Q ss_pred cccceeEEEE-CCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece----------eeeeEEEEEEEcCCCCCcCce
Q 039719 70 LALARADWME-TPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE----------WTFGKFWRQFRMHMSTDLDHI 138 (186)
Q Consensus 70 ~~~p~vdi~e-~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~----------~~~~~f~R~~~LP~~vd~~~i 138 (186)
...|++||+| ++++|.|+++|||++++||+|++++ |.|+|+|+++.+ +.+|+|+|+|.||++||.+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~-- 106 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS-- 106 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--
Confidence 3568899998 5789999999999999999999999 899999997542 4889999999999999998
Q ss_pred EEEEeCCEEEEEEeccCcccCCCCeEEEeccCCC
Q 039719 139 KAHTENGILRVTVPKLAEEKKRQPEVINIDEESC 172 (186)
Q Consensus 139 ~A~~~nGvL~I~lPK~~~~~~~~~k~I~I~~~~~ 172 (186)
+|+|+||||+|++||..++ ..++|+|+|+...+
T Consensus 107 ~A~~~nGVL~I~lPK~~~~-~~~~rkI~I~~~~~ 139 (142)
T PRK11597 107 GATFVNGLLHIDLIRNEPE-AIAPQRIAISERPA 139 (142)
T ss_pred cCEEcCCEEEEEEeccCcc-ccCCcEEEECCccc
Confidence 6999999999999997433 23689999987543
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.4e-25 Score=170.52 Aligned_cols=97 Identities=36% Similarity=0.577 Sum_probs=88.5
Q ss_pred cccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece------------eeeeEEEEEEEcCCCCCcCc
Q 039719 70 LALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE------------WTFGKFWRQFRMHMSTDLDH 137 (186)
Q Consensus 70 ~~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~------------~~~~~f~R~~~LP~~vd~~~ 137 (186)
...|++||+++++.|.|.++|||++++||+|++++ +.|+|+|++..+ +.+|.|+|+|.||..|+++.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 36899999999999999999999999999999999 899999999752 48999999999999999999
Q ss_pred eEEEEeCCEEEEEEeccCcccCCCCeEEEec
Q 039719 138 IKAHTENGILRVTVPKLAEEKKRQPEVINID 168 (186)
Q Consensus 138 i~A~~~nGvL~I~lPK~~~~~~~~~k~I~I~ 168 (186)
++|+|+||+|+|++||.++++ .++++|+|+
T Consensus 117 ~~A~~~nGvL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred eeeEeeCcEEEEEEecccccc-ccCceeecC
Confidence 999999999999999998764 457888874
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.90 E-value=2e-23 Score=150.40 Aligned_cols=80 Identities=56% Similarity=0.931 Sum_probs=73.9
Q ss_pred eeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece------------eeeeEEEEEEEcCCCCCcCceEEE
Q 039719 74 RADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE------------WTFGKFWRQFRMHMSTDLDHIKAH 141 (186)
Q Consensus 74 ~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~------------~~~~~f~R~~~LP~~vd~~~i~A~ 141 (186)
++||+|++++|+|.++|||++++||+|++++++.|+|+|++..+ +.+|+|.|+|.||.+||.+.|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 48999999999999999999999999999874589999997532 468999999999999999999999
Q ss_pred EeCCEEEEEEec
Q 039719 142 TENGILRVTVPK 153 (186)
Q Consensus 142 ~~nGvL~I~lPK 153 (186)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999997
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.90 E-value=7.7e-23 Score=149.05 Aligned_cols=92 Identities=40% Similarity=0.649 Sum_probs=78.3
Q ss_pred EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece----------eeeeEEEEEEEcCCCCCcCceEEEEeCC
Q 039719 76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE----------WTFGKFWRQFRMHMSTDLDHIKAHTENG 145 (186)
Q Consensus 76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~----------~~~~~f~R~~~LP~~vd~~~i~A~~~nG 145 (186)
||.+++++|.|.++|||++++||+|++++ +.|+|+|++... +.++.|.|+|.||.++|.++|+|.|+||
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-CccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 79999999999999999999999999999 799999999822 3668999999999999999999999999
Q ss_pred EEEEEEeccCcccCCCCeEEEec
Q 039719 146 ILRVTVPKLAEEKKRQPEVINID 168 (186)
Q Consensus 146 vL~I~lPK~~~~~~~~~k~I~I~ 168 (186)
+|+|++||....+...+++|+|+
T Consensus 80 vL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 80 VLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEEEEEEBSSSCTTSSSCEE-ET
T ss_pred EEEEEEEccccccCCCCeEEEeC
Confidence 99999999988765578999985
No 6
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.89 E-value=1.9e-22 Score=144.17 Aligned_cols=77 Identities=18% Similarity=0.387 Sum_probs=72.4
Q ss_pred EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEE-eCCEEEE
Q 039719 76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHT-ENGILRV 149 (186)
Q Consensus 76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~-~nGvL~I 149 (186)
+|++++++|.|.++|||++++||+|++.+ +.|+|+|++... +..+.|.|+|.||++||.++|+|+| +||+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I 82 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF 82 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEE
Confidence 79999999999999999999999999999 899999997543 6677899999999999999999999 8999999
Q ss_pred EEec
Q 039719 150 TVPK 153 (186)
Q Consensus 150 ~lPK 153 (186)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9998
No 7
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.88 E-value=2.4e-22 Score=142.27 Aligned_cols=77 Identities=10% Similarity=0.228 Sum_probs=72.6
Q ss_pred EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece--eeeeEEEEEEEcCCCCCcCceEEEE-eCCEEEEEEe
Q 039719 76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE--WTFGKFWRQFRMHMSTDLDHIKAHT-ENGILRVTVP 152 (186)
Q Consensus 76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~--~~~~~f~R~~~LP~~vd~~~i~A~~-~nGvL~I~lP 152 (186)
||.|++++|.|.++|||++++||+|++++ +.|+|+|+++.+ ..+|+|+|+|.||.+||+++|+|+| +||+|+|+++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~ 80 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKAR 80 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEec
Confidence 68999999999999999999999999999 899999998654 5689999999999999999999997 9999999998
Q ss_pred c
Q 039719 153 K 153 (186)
Q Consensus 153 K 153 (186)
+
T Consensus 81 ~ 81 (81)
T cd06479 81 R 81 (81)
T ss_pred C
Confidence 5
No 8
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.87 E-value=6.9e-22 Score=140.35 Aligned_cols=77 Identities=16% Similarity=0.367 Sum_probs=71.4
Q ss_pred EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEE-eCCEEEE
Q 039719 76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHT-ENGILRV 149 (186)
Q Consensus 76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~-~nGvL~I 149 (186)
+|.+++++|.|.++||||+++||+|++.+ +.|+|+|++... +..+.|.|+|.||.+||.++|+|+| +||+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I 79 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTI 79 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEE
Confidence 47899999999999999999999999999 899999987643 5667899999999999999999999 7999999
Q ss_pred EEec
Q 039719 150 TVPK 153 (186)
Q Consensus 150 ~lPK 153 (186)
++||
T Consensus 80 ~~PK 83 (83)
T cd06478 80 SGPR 83 (83)
T ss_pred EecC
Confidence 9997
No 9
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.87 E-value=6.6e-22 Score=142.47 Aligned_cols=79 Identities=33% Similarity=0.603 Sum_probs=73.4
Q ss_pred ceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece--------------eeeeEEEEEEEcCCCCCcCce
Q 039719 73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE--------------WTFGKFWRQFRMHMSTDLDHI 138 (186)
Q Consensus 73 p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~--------------~~~~~f~R~~~LP~~vd~~~i 138 (186)
+++||+|++++|+|.++|||++++||+|++++ +.|+|+|++... +.+|+|.|+|.|| ++|.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 36999999999999999999999999999999 899999998641 3789999999999 7999999
Q ss_pred EEEEeCCEEEEEEec
Q 039719 139 KAHTENGILRVTVPK 153 (186)
Q Consensus 139 ~A~~~nGvL~I~lPK 153 (186)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.87 E-value=9.3e-22 Score=140.09 Aligned_cols=77 Identities=18% Similarity=0.349 Sum_probs=71.5
Q ss_pred EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEEe-CCEEEEE
Q 039719 77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHTE-NGILRVT 150 (186)
Q Consensus 77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~~-nGvL~I~ 150 (186)
+++++++|.|.++||||+++||+|++.+ +.|+|+|++..+ +..+.|.|+|.||.+||.++|+|+|+ ||+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVC 80 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEE
Confidence 5788999999999999999999999999 899999987553 67789999999999999999999995 9999999
Q ss_pred Eecc
Q 039719 151 VPKL 154 (186)
Q Consensus 151 lPK~ 154 (186)
+||+
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9985
No 11
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.87 E-value=1.6e-21 Score=139.41 Aligned_cols=77 Identities=17% Similarity=0.388 Sum_probs=72.6
Q ss_pred eEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEEe-CCEEE
Q 039719 75 ADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHTE-NGILR 148 (186)
Q Consensus 75 vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~~-nGvL~ 148 (186)
.||+|++++|.|.++|||++++||+|++.+ +.|+|+|++... +..++|+|+|.||.+||.++|+|+|. ||+|+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence 589999999999999999999999999999 799999998653 57789999999999999999999996 99999
Q ss_pred EEEe
Q 039719 149 VTVP 152 (186)
Q Consensus 149 I~lP 152 (186)
|++|
T Consensus 82 I~lP 85 (86)
T cd06475 82 VEAP 85 (86)
T ss_pred EEec
Confidence 9998
No 12
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.86 E-value=4.2e-21 Score=138.07 Aligned_cols=78 Identities=27% Similarity=0.385 Sum_probs=71.3
Q ss_pred ceeEEEECC-CEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----------eeeeEEEEEEEcCCCCCcCceEE
Q 039719 73 ARADWMETP-TIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----------WTFGKFWRQFRMHMSTDLDHIKA 140 (186)
Q Consensus 73 p~vdi~e~~-~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----------~~~~~f~R~~~LP~~vd~~~i~A 140 (186)
|++||+|++ ++|.|.++|||++++||+|++++ +.|+|+|++... +.+|+|.|+|.||.++|.+ +|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence 579999975 99999999999999999999999 899999998654 3689999999999999875 89
Q ss_pred EEeCCEEEEEEec
Q 039719 141 HTENGILRVTVPK 153 (186)
Q Consensus 141 ~~~nGvL~I~lPK 153 (186)
+|+||+|+|++|+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 9999999999985
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.86 E-value=3.6e-21 Score=136.81 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=70.0
Q ss_pred EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEEe-CCEEEEE
Q 039719 77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHTE-NGILRVT 150 (186)
Q Consensus 77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~~-nGvL~I~ 150 (186)
+..++++|.|.++|||++++||+|++.+ +.|+|+|++... +..+.|+|+|.||.+||.++|+|+|. ||+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQ 80 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEE
Confidence 3467899999999999999999999999 899999998543 67889999999999999999999995 9999999
Q ss_pred Eec
Q 039719 151 VPK 153 (186)
Q Consensus 151 lPK 153 (186)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 14
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.84 E-value=2.7e-20 Score=132.37 Aligned_cols=73 Identities=23% Similarity=0.368 Sum_probs=68.1
Q ss_pred ECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEE-eCCEEEEEEe
Q 039719 79 ETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHT-ENGILRVTVP 152 (186)
Q Consensus 79 e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~-~nGvL~I~lP 152 (186)
|++++|.|+++|||++++||+|++.+ +.|+|+|++..+ +..++|+|+|.||.+||.++|+|+| +||+|+|+.|
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 68899999999999999999999999 899999998653 6778999999999999999999998 8999999976
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.83 E-value=3.7e-20 Score=132.61 Aligned_cols=74 Identities=19% Similarity=0.431 Sum_probs=68.2
Q ss_pred ECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece---------eeeeEEEEEEEcCCCCCcCceEEEE-eCCEEE
Q 039719 79 ETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE---------WTFGKFWRQFRMHMSTDLDHIKAHT-ENGILR 148 (186)
Q Consensus 79 e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~---------~~~~~f~R~~~LP~~vd~~~i~A~~-~nGvL~ 148 (186)
+.+++|.|.++||||+++||+|++++ +.|+|+|++... +.+|+|.|+|.||.+||.+.|+|+| +||+|+
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~ 82 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLH 82 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEE
Confidence 56789999999999999999999999 899999997543 3679999999999999999999999 999999
Q ss_pred EEEec
Q 039719 149 VTVPK 153 (186)
Q Consensus 149 I~lPK 153 (186)
|++|+
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99995
No 16
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.82 E-value=7.6e-20 Score=129.42 Aligned_cols=72 Identities=24% Similarity=0.476 Sum_probs=67.8
Q ss_pred CCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEEeC-CEEEEEEec
Q 039719 81 PTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHTEN-GILRVTVPK 153 (186)
Q Consensus 81 ~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~~n-GvL~I~lPK 153 (186)
+++|.|.++||||+++||+|++++ +.|+|+|++... +.+++|.|+|.||.+||.++++|+|.| |+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 369999999999999999999999 899999998764 678999999999999999999999998 999999997
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.81 E-value=1.6e-19 Score=129.48 Aligned_cols=72 Identities=18% Similarity=0.405 Sum_probs=66.6
Q ss_pred CCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece--------eeeeEEEEEEEcCCCCCcCceEEEEeCC-EEEEE
Q 039719 80 TPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE--------WTFGKFWRQFRMHMSTDLDHIKAHTENG-ILRVT 150 (186)
Q Consensus 80 ~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~--------~~~~~f~R~~~LP~~vd~~~i~A~~~nG-vL~I~ 150 (186)
++++|+|.++|||++++||+|++.+ +.|+|+|+++.. +.+|+|.|+|.||.+||.++|+|+|+|| +|+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 5789999999999999999999999 899999998642 6899999999999999999999999776 99998
Q ss_pred Ee
Q 039719 151 VP 152 (186)
Q Consensus 151 lP 152 (186)
-|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 76
No 18
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.79 E-value=6.3e-19 Score=123.77 Aligned_cols=77 Identities=47% Similarity=0.758 Sum_probs=72.3
Q ss_pred EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----------eeeeEEEEEEEcCCCCCcCceEEEEeC
Q 039719 76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----------WTFGKFWRQFRMHMSTDLDHIKAHTEN 144 (186)
Q Consensus 76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----------~~~~~f~R~~~LP~~vd~~~i~A~~~n 144 (186)
++.|++++|.|.++|||+++++|+|++.+ +.|.|+|++... +.++.|.|+|.||.++|.+.++|.|+|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC
Confidence 57899999999999999999999999999 899999998853 458999999999999999999999999
Q ss_pred CEEEEEEec
Q 039719 145 GILRVTVPK 153 (186)
Q Consensus 145 GvL~I~lPK 153 (186)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.71 E-value=5.2e-17 Score=117.30 Aligned_cols=75 Identities=13% Similarity=0.274 Sum_probs=69.7
Q ss_pred EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEEe-CCEEEEE
Q 039719 77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHTE-NGILRVT 150 (186)
Q Consensus 77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~~-nGvL~I~ 150 (186)
+..+++.|.|.+++.||++|||+|++.+ +.|+|+|++... +..++|.|+|.||.+||.+.|+|+|. ||+|+|.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie 88 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE 88 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence 3467889999999999999999999999 899999998764 67899999999999999999999996 9999999
Q ss_pred Ee
Q 039719 151 VP 152 (186)
Q Consensus 151 lP 152 (186)
+|
T Consensus 89 aP 90 (91)
T cd06480 89 AP 90 (91)
T ss_pred cC
Confidence 98
No 20
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.3e-16 Score=123.71 Aligned_cols=101 Identities=16% Similarity=0.364 Sum_probs=90.8
Q ss_pred cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eeeeEEEEEEEcCCCCCcCceEEEE-eCC
Q 039719 72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAHT-ENG 145 (186)
Q Consensus 72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~~~f~R~~~LP~~vd~~~i~A~~-~nG 145 (186)
....++..++++|.|.+|+..|++++|+|++.+ +.|.|.|++.+. +..++|.|+|.||.+||++.|++.+ .||
T Consensus 62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dG 140 (173)
T KOG3591|consen 62 SGASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDG 140 (173)
T ss_pred ccccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCc
Confidence 356788999999999999999999999999999 799999998875 6889999999999999999999999 899
Q ss_pred EEEEEEeccCcccCCCCeEEEeccCCCCC
Q 039719 146 ILRVTVPKLAEEKKRQPEVINIDEESCNS 174 (186)
Q Consensus 146 vL~I~lPK~~~~~~~~~k~I~I~~~~~~~ 174 (186)
+|+|.+||.+.... ..+.|+|+..+..+
T Consensus 141 vLtI~ap~~~~~~~-~er~ipI~~~~~~~ 168 (173)
T KOG3591|consen 141 VLTIEAPKPPPKQD-NERSIPIEQVGPSA 168 (173)
T ss_pred eEEEEccCCCCcCc-cceEEeEeecCccc
Confidence 99999999986643 57899999876643
No 21
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.5e-16 Score=129.64 Aligned_cols=100 Identities=44% Similarity=0.671 Sum_probs=86.2
Q ss_pred ccccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece--------------eeeeEEEEEEEcCCCCC
Q 039719 69 TLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE--------------WTFGKFWRQFRMHMSTD 134 (186)
Q Consensus 69 ~~~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~--------------~~~~~f~R~~~LP~~vd 134 (186)
..+.++++|.|.++.|.+.+++||+++++|+|+++++++|+|+|++..+ ..+|.|.|.+.||++++
T Consensus 81 ~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~ 160 (196)
T KOG0710|consen 81 SEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVD 160 (196)
T ss_pred ccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcccc
Confidence 3456778899999999999999999999999999995589999998764 37899999999999999
Q ss_pred cCceEEEEeCCEEEEEEeccCcc-cCCCCeEEEec
Q 039719 135 LDHIKAHTENGILRVTVPKLAEE-KKRQPEVINID 168 (186)
Q Consensus 135 ~~~i~A~~~nGvL~I~lPK~~~~-~~~~~k~I~I~ 168 (186)
.+.|+|.|+||||+|++||..+. +....+.|.|.
T Consensus 161 ~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 161 VDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred HHHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 99999999999999999999873 22345566554
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.53 E-value=1.1e-13 Score=93.48 Aligned_cols=76 Identities=42% Similarity=0.775 Sum_probs=69.8
Q ss_pred EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece----eeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719 77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE----WTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP 152 (186)
Q Consensus 77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~----~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP 152 (186)
|+++++.|.|++++||+.++++.|.+.+ +.|.|+|++... ...+.|.+++.||..++++.++|.+.+|+|+|++|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 4688899999999999999999999999 899999997642 34689999999999999999999999999999999
Q ss_pred c
Q 039719 153 K 153 (186)
Q Consensus 153 K 153 (186)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.32 E-value=1.3e-11 Score=85.41 Aligned_cols=71 Identities=21% Similarity=0.264 Sum_probs=65.2
Q ss_pred EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccCc
Q 039719 77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAE 156 (186)
Q Consensus 77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~~ 156 (186)
|+++++.+.|.+++||+++++++|++++ +.|.|++ ..|.+.+.||..||++..++++.+|.|.|+++|.++
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~--------~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF--------PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEP 71 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcC--------CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCC
Confidence 4688999999999999999999999999 7899986 368899999999999999999999999999999754
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.07 E-value=1.3e-09 Score=75.05 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=68.0
Q ss_pred EEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccCc
Q 039719 77 WMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAE 156 (186)
Q Consensus 77 i~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~~ 156 (186)
++++++.+.|.+.+||..+++++|.+.+ +.|+|++.... .+.|...+.|+..|+++...+++++|.|.|+++|..+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~---~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG---GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC---CCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 3578899999999999999999999999 79999987542 3578889999999999999999999999999999865
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.05 E-value=1.5e-09 Score=86.78 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=64.0
Q ss_pred ccceeEEEECCC-EEEEEEecCCCCccc-EEEEEEe-CcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEE
Q 039719 71 ALARADWMETPT-IHVITLDIPVMKKDN-VKIEVEE-NRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGIL 147 (186)
Q Consensus 71 ~~p~vdi~e~~~-~y~l~v~LPG~~~ed-i~V~v~~-~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL 147 (186)
..+.+++.+.++ ...|.++|||+.+++ |+|.++. .+.|+|+ . -+.+.+++.||.. +.+.+++.|+||||
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~--~-----~~~~~krv~L~~~-~~e~~~~t~nNgIL 161 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIR--V-----GEKYLKRVALPWP-DPEITSATFNNGIL 161 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEe--c-----CCceEeeEecCCC-ccceeeEEEeCceE
Confidence 457789998887 699999999999888 9999985 1345554 3 2457789999976 78999999999999
Q ss_pred EEEEeccCcc
Q 039719 148 RVTVPKLAEE 157 (186)
Q Consensus 148 ~I~lPK~~~~ 157 (186)
+|++-+.++.
T Consensus 162 EIri~~~~~~ 171 (177)
T PF05455_consen 162 EIRIRRTEES 171 (177)
T ss_pred EEEEeecCCC
Confidence 9999887654
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.85 E-value=1.8e-08 Score=70.33 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=68.3
Q ss_pred EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccC
Q 039719 76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLA 155 (186)
Q Consensus 76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~ 155 (186)
||+++++...|.+.+||+.++++.|.+++ +.|.|++.... .+.|...+.|+..|+++..++.+.+|.|.|++.|..
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~~---~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~ 76 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILPG---GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAE 76 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECCC---CCeEEEecccccccCchhcEEEEeCeEEEEEEEcCC
Confidence 67899999999999999999999999999 78999876431 246888899999999999999999999999999976
Q ss_pred c
Q 039719 156 E 156 (186)
Q Consensus 156 ~ 156 (186)
+
T Consensus 77 ~ 77 (84)
T cd06466 77 P 77 (84)
T ss_pred C
Confidence 4
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.55 E-value=2.8e-06 Score=57.84 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=65.4
Q ss_pred ceeEEEECCCEEEEEEecCCC--CcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEE
Q 039719 73 ARADWMETPTIHVITLDIPVM--KKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVT 150 (186)
Q Consensus 73 p~vdi~e~~~~y~l~v~LPG~--~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~ 150 (186)
|.++|+++++...|.+.+++. ++++++|.+.+ +.|.|+...... ..|.-.+.|...|+++.....+.++.|.|+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~---~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~ 76 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDG---KEYLLEGELFGEIDPDESTWKVKDNKIEIT 76 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTS---CEEEEEEEBSS-BECCCEEEEEETTEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCC---ceEEEEEEEeeeEcchhcEEEEECCEEEEE
Confidence 568999999999999999665 59999999999 799999764431 477778899999999999999999999999
Q ss_pred Eec
Q 039719 151 VPK 153 (186)
Q Consensus 151 lPK 153 (186)
|.|
T Consensus 77 L~K 79 (79)
T PF04969_consen 77 LKK 79 (79)
T ss_dssp EEB
T ss_pred EEC
Confidence 987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.23 E-value=1.8e-05 Score=58.26 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=67.5
Q ss_pred ceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719 73 ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP 152 (186)
Q Consensus 73 p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP 152 (186)
|+++++++.+...|.+.+||+ +++.|.++. +.|.|++..... ...|.-.+.|...|+++..+.++.++.|.|++.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~~--~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~ 75 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGGG--GKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLR 75 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCCC--CeeEEEEeEhhhhccccccEEEecCCeEEEEEE
Confidence 478999999999999999998 889999999 789999854211 234777889999999999999999999999999
Q ss_pred ccC
Q 039719 153 KLA 155 (186)
Q Consensus 153 K~~ 155 (186)
|..
T Consensus 76 K~~ 78 (108)
T cd06465 76 KKE 78 (108)
T ss_pred ECC
Confidence 986
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.18 E-value=8.9e-06 Score=70.20 Aligned_cols=65 Identities=25% Similarity=0.429 Sum_probs=57.7
Q ss_pred CCEEEEEEecCCC-CcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEE--eCCEEEEEEe
Q 039719 81 PTIHVITLDIPVM-KKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHT--ENGILRVTVP 152 (186)
Q Consensus 81 ~~~y~l~v~LPG~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~--~nGvL~I~lP 152 (186)
.+.++|+++|||+ +..+|+|.|.+ ..|.|.... ..|.-.+.||..||.+..+|.| +.++|+|++|
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~------~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPK------PKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCC------CceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 5789999999999 88999999999 789888442 2588889999999999999999 5699999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.13 E-value=2.3e-05 Score=55.03 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=65.6
Q ss_pred EEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccC
Q 039719 76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLA 155 (186)
Q Consensus 76 di~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~ 155 (186)
||+++++...|.+.++|+.++++.|++++ +.|.+++.... ...|.-.+.|...|+++..+.....+-+.|++.|.+
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~---~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~ 76 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS---GNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTE 76 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC---CCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCC
Confidence 67889999999999999999999999999 78999876532 125777789999999998888888999999999975
No 31
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.92 E-value=0.0001 Score=51.37 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=62.0
Q ss_pred eEEEECCCEEEEEEecC-CCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeC-CEEEEEEe
Q 039719 75 ADWMETPTIHVITLDIP-VMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTEN-GILRVTVP 152 (186)
Q Consensus 75 vdi~e~~~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~n-GvL~I~lP 152 (186)
++++++++...|.+.+| +++++|++|.+.+ +.|.|+... +.+.-.-.|...||++...-++.+ ..|.|+++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~------~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~ 73 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG------GEPLLDGELYAKVKVDESTWTLEDGKLLEITLE 73 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC------CCceEcCcccCceeEcCCEEEEeCCCEEEEEEE
Confidence 36789999999999997 7899999999999 789998642 122233468899999998888999 99999999
Q ss_pred ccCc
Q 039719 153 KLAE 156 (186)
Q Consensus 153 K~~~ 156 (186)
|.++
T Consensus 74 K~~~ 77 (85)
T cd06467 74 KRNE 77 (85)
T ss_pred ECCC
Confidence 9864
No 32
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.88 E-value=0.00019 Score=50.90 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=67.4
Q ss_pred eeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEec
Q 039719 74 RADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPK 153 (186)
Q Consensus 74 ~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK 153 (186)
+.||+++++...|.+.+.|+.++++.+.+++ +.|+++..... ...|.-.+.|-..|+++..+-....+-+.|++.|
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~---~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K 77 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG---NKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRK 77 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC---CceEEEEeeccceEChhHcEEEecCcEEEEEEEe
Confidence 4799999999999999999999999999988 78888755332 1257788899999999998888899999999999
Q ss_pred cCc
Q 039719 154 LAE 156 (186)
Q Consensus 154 ~~~ 156 (186)
.++
T Consensus 78 ~~~ 80 (87)
T cd06488 78 AEP 80 (87)
T ss_pred CCC
Confidence 864
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.85 E-value=0.00031 Score=49.84 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=65.3
Q ss_pred eeEEEECCCEEEEEEecCCCCc---ccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEE-cCCCCCcCceEEEEeCCEEEE
Q 039719 74 RADWMETPTIHVITLDIPVMKK---DNVKIEVEENRVLRVSGERKTEWTFGKFWRQFR-MHMSTDLDHIKAHTENGILRV 149 (186)
Q Consensus 74 ~vdi~e~~~~y~l~v~LPG~~~---edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~-LP~~vd~~~i~A~~~nGvL~I 149 (186)
.++|+++++...|.+.+|+..+ ++++|++.. +.|.|++.... -..|.-.+. |-..|+++..+.....+-+.|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~~---~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i 78 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDLN---GKNYRFTINRLLKKIDPEKSSFKVKTDRIVI 78 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECCC---CcEEEEEehHhhCccCccccEEEEeCCEEEE
Confidence 4789999999999999999977 999999999 78999875322 124544554 889999999999999999999
Q ss_pred EEeccCc
Q 039719 150 TVPKLAE 156 (186)
Q Consensus 150 ~lPK~~~ 156 (186)
++.|.++
T Consensus 79 ~L~K~~~ 85 (92)
T cd06468 79 TLAKKKE 85 (92)
T ss_pred EEEeCCC
Confidence 9999864
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.80 E-value=0.00029 Score=49.62 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=59.9
Q ss_pred eEEEECCCEEEEEEecC-CCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCC-EEEEEEe
Q 039719 75 ADWMETPTIHVITLDIP-VMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENG-ILRVTVP 152 (186)
Q Consensus 75 vdi~e~~~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nG-vL~I~lP 152 (186)
++++++.+...|.+.+| |++++|++|+++. +.|.+...... .+ -.-.|...|+++...-..++| .|.|++.
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~~~-----~~-~~g~L~~~I~~d~Stw~i~~~~~l~i~L~ 73 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKDQA-----PL-LEGKLYSSIDHESSTWIIKENKSLEVSLI 73 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCCCC-----eE-EeCcccCcccccCcEEEEeCCCEEEEEEE
Confidence 36789999999999996 9999999999999 78888753111 12 234788999999977777777 6999999
Q ss_pred ccCc
Q 039719 153 KLAE 156 (186)
Q Consensus 153 K~~~ 156 (186)
|.++
T Consensus 74 K~~~ 77 (85)
T cd06493 74 KKDE 77 (85)
T ss_pred ECCC
Confidence 9864
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.46 E-value=0.0024 Score=47.23 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=64.1
Q ss_pred cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719 72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV 151 (186)
Q Consensus 72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l 151 (186)
.|.+++.++.+...|++.+|+ .+|++|.+++ +.|.++|.... -..|.-.+.|-..|+++..+-+...--+.|.+
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~~---g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L 74 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNGD---NVKIYNEIELYDRVDPNDSKHKRTDRSILCCL 74 (106)
T ss_pred CCcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECCC---CcEEEEEEEeecccCcccCeEEeCCceEEEEE
Confidence 367999999999999999999 5799999999 78999985422 12366678888999999877777777888999
Q ss_pred eccCc
Q 039719 152 PKLAE 156 (186)
Q Consensus 152 PK~~~ 156 (186)
.|.++
T Consensus 75 ~K~~~ 79 (106)
T cd00237 75 RKGKE 79 (106)
T ss_pred EeCCC
Confidence 99864
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.41 E-value=0.0021 Score=46.47 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=62.1
Q ss_pred cceeEEEECCCEEEEEEecC-CCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCE-EEE
Q 039719 72 LARADWMETPTIHVITLDIP-VMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGI-LRV 149 (186)
Q Consensus 72 ~p~vdi~e~~~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGv-L~I 149 (186)
...++++.+.+...|.+.+| |+++.|+.|.+.. +.|.|..... ..-.| .|...|+++...-.+++|- |.|
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~g~-~~l~G------~L~~~I~~destWtled~k~l~I 76 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVKGQ-EVLKG------KLFDSVVADECTWTLEDRKLIRI 76 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEECCE-EEEcC------cccCccCcccCEEEEECCcEEEE
Confidence 45789999999999999998 8999999999999 7888874211 01111 6888999999888888875 899
Q ss_pred EEeccCc
Q 039719 150 TVPKLAE 156 (186)
Q Consensus 150 ~lPK~~~ 156 (186)
++.|...
T Consensus 77 ~L~K~~~ 83 (93)
T cd06494 77 VLTKSNR 83 (93)
T ss_pred EEEeCCC
Confidence 9999753
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.89 E-value=0.0061 Score=53.75 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=68.8
Q ss_pred cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719 72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV 151 (186)
Q Consensus 72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l 151 (186)
..+.||+++++...|.+.+.|+.++++.|++.+ +.|.|+..... ...|...+.|-..|+++..+.+..-.-+.|++
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~---~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l 231 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPG---EDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRL 231 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCC---CcceeecccccccccccccEEEEecceEEEEE
Confidence 367899999999999999999999999999999 78888865432 12566668899999999988888888999999
Q ss_pred eccCc
Q 039719 152 PKLAE 156 (186)
Q Consensus 152 PK~~~ 156 (186)
.|.+.
T Consensus 232 ~K~~~ 236 (356)
T PLN03088 232 AKAEP 236 (356)
T ss_pred ecCCC
Confidence 98764
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.61 E-value=0.009 Score=48.23 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=65.1
Q ss_pred cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719 72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV 151 (186)
Q Consensus 72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l 151 (186)
.++.|+++++...+|.+-.+|+.++|+.|.+.+ +.|.+..+... ...|.-...|-..|.+++.+-+.----+.|++
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~---g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L 78 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPS---GSEYNLQLKLYHEIIPEKSSFKVFSTKVEITL 78 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCC---chhhhhhHHhcccccccceeeEeeeeeEEEEe
Confidence 457899999999999999999999999999998 78888866542 12455555677889898877666677899999
Q ss_pred eccCc
Q 039719 152 PKLAE 156 (186)
Q Consensus 152 PK~~~ 156 (186)
+|.+.
T Consensus 79 ~K~~~ 83 (196)
T KOG1309|consen 79 AKAEI 83 (196)
T ss_pred ccccc
Confidence 99543
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.07 E-value=0.12 Score=36.46 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=56.1
Q ss_pred eEEEECCCEEEEEEecCC--CCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEe--CCEEEEE
Q 039719 75 ADWMETPTIHVITLDIPV--MKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTE--NGILRVT 150 (186)
Q Consensus 75 vdi~e~~~~y~l~v~LPG--~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~--nGvL~I~ 150 (186)
.||+.+++...|.+-..+ ..++++.+.... +.|.|+-.... ..|...+.|-..|+++. +.++. -|-++|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~~----~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~ 74 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILGD----KSYLLHLDLSNEVQWPC-EVRISTETGKIELV 74 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECCC----ceEEEeeeccccCCCCc-EEEEcccCceEEEE
Confidence 489999999999999885 455555566566 57888754321 24677788988998775 55554 7899999
Q ss_pred EeccCc
Q 039719 151 VPKLAE 156 (186)
Q Consensus 151 lPK~~~ 156 (186)
+.|.++
T Consensus 75 L~K~e~ 80 (87)
T cd06490 75 LKKKEP 80 (87)
T ss_pred EEcCCC
Confidence 999764
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.88 E-value=0.11 Score=36.76 Aligned_cols=73 Identities=14% Similarity=0.255 Sum_probs=55.6
Q ss_pred EEECCCEEEEEEecC-C--CCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCC-EEEEEEe
Q 039719 77 WMETPTIHVITLDIP-V--MKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENG-ILRVTVP 152 (186)
Q Consensus 77 i~e~~~~y~l~v~LP-G--~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nG-vL~I~lP 152 (186)
+..+.+...|.+.+| | .+..|++|.++. +.|.|.-+.. ..--.=.|...|+++...-.+++| .|.|++-
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~------~~~i~G~L~~~V~~des~Wtled~~~l~i~L~ 75 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQ------PPIIDGELYNEVKVEESSWLIEDGKVVTVNLE 75 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCC------ceEEeCcccCcccccccEEEEeCCCEEEEEEE
Confidence 557778888999996 3 899999999999 7888864321 111223678899998888888886 8999999
Q ss_pred ccCc
Q 039719 153 KLAE 156 (186)
Q Consensus 153 K~~~ 156 (186)
|...
T Consensus 76 K~~~ 79 (87)
T cd06492 76 KINK 79 (87)
T ss_pred ECCC
Confidence 9753
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.40 E-value=0.31 Score=35.72 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=59.8
Q ss_pred cceeEEEECCCEEEEEEecC-C-CCcccEEEEEEeCcEEEEEEEE--ec-eeeeeEEEEEEEcCCCCCcCceEEEEeCC-
Q 039719 72 LARADWMETPTIHVITLDIP-V-MKKDNVKIEVEENRVLRVSGER--KT-EWTFGKFWRQFRMHMSTDLDHIKAHTENG- 145 (186)
Q Consensus 72 ~p~vdi~e~~~~y~l~v~LP-G-~~~edi~V~v~~~~~L~I~g~~--~~-~~~~~~f~R~~~LP~~vd~~~i~A~~~nG- 145 (186)
...+.+..+.+...|.+.|| | .+..+|.|.+.. ..|.|.-.. .. ..-.| .|+..|+.+.-.-.++||
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~~~~~~i~G------~L~~~V~~des~Wtled~~ 76 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGGGEKVLMEG------EFTHKINTENSLWSLEPGK 76 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCCCCceEEeC------cccCcccCccceEEEeCCC
Confidence 45688999999999999999 6 468899999999 788887542 11 11122 588899999888888886
Q ss_pred EEEEEEeccC
Q 039719 146 ILRVTVPKLA 155 (186)
Q Consensus 146 vL~I~lPK~~ 155 (186)
.|.|++-|..
T Consensus 77 ~l~I~L~K~~ 86 (102)
T cd06495 77 CVLLSLSKCS 86 (102)
T ss_pred EEEEEEEECC
Confidence 4899999974
No 42
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=88.29 E-value=0.38 Score=41.64 Aligned_cols=111 Identities=17% Similarity=0.098 Sum_probs=76.3
Q ss_pred cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719 72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV 151 (186)
Q Consensus 72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l 151 (186)
...+|+.+|.....|-+.-|-+..++|.+.+++ |.|.|+-+.... ..-+.-...|-..|+++...-+.---++.|++
T Consensus 176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~--~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l 252 (368)
T COG5091 176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRL--RLWNDITISLYKEVYPDIRSIKSFSKRVEVHL 252 (368)
T ss_pred eeeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeecccc--chHHHhhhhhhhhcCcchhhhhhcchhheehh
Confidence 346777889999999999999999999999999 899999765432 11223446777889888877665447888888
Q ss_pred eccCccc------CCCCeEEEeccCCCCCCcccccccccC
Q 039719 152 PKLAEEK------KRQPEVINIDEESCNSSNEDIKATKSQ 185 (186)
Q Consensus 152 PK~~~~~------~~~~k~I~I~~~~~~~~~~~~~~~k~~ 185 (186)
.|.+..+ .....-..+-.++.+++.++.+..|+|
T Consensus 253 ~KV~~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~ 292 (368)
T COG5091 253 RKVEMVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQ 292 (368)
T ss_pred hhhhhhhhcccccCccccccccccccccccccCCcccccc
Confidence 8876431 001122334455666666666666654
No 43
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=80.46 E-value=16 Score=29.55 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=60.4
Q ss_pred cccceeEEEECCCEEEEEEecC-CC-CcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEE
Q 039719 70 LALARADWMETPTIHVITLDIP-VM-KKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGIL 147 (186)
Q Consensus 70 ~~~p~vdi~e~~~~y~l~v~LP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL 147 (186)
...+.+.|..|=....|.+.+| |+ +..+|.|.+.. ..|.|.-+.....-.| .|...|+.+...-.+++|.+
T Consensus 16 ~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~~ildG------~L~~~vk~des~WtiEd~k~ 88 (179)
T KOG2265|consen 16 ADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQPPILDG------ELSHSVKVDESTWTIEDGKM 88 (179)
T ss_pred ccccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCCceecC------ccccccccccceEEecCCEE
Confidence 3456788888888899998887 88 89999999999 7787775433222223 46677888888888999988
Q ss_pred EEEEeccCc
Q 039719 148 RVTVPKLAE 156 (186)
Q Consensus 148 ~I~lPK~~~ 156 (186)
.|++-++..
T Consensus 89 i~i~l~K~~ 97 (179)
T KOG2265|consen 89 IVILLKKSN 97 (179)
T ss_pred EEEEeeccc
Confidence 888777654
No 44
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=79.45 E-value=25 Score=26.65 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=47.9
Q ss_pred cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece-----eee----eEEEEEEEcCCCCCcCceEEEE
Q 039719 72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTF----GKFWRQFRMHMSTDLDHIKAHT 142 (186)
Q Consensus 72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~-----~~~----~~f~R~~~LP~~vd~~~i~A~~ 142 (186)
...+.|...++ ..+++.. ..+.++++.++ +.|.|+.+.... +.. ..-.-.+.||.....++++..-
T Consensus 65 ~~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~ 139 (166)
T PF13349_consen 65 NGDVEIKPSDD-DKIKVEY---NGKKPEISVEG-GTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKT 139 (166)
T ss_pred ceeEEEEEcCC-ccEEEEE---cCcEEEEEEcC-CEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEe
Confidence 44577766444 3334444 22268888888 899999883322 211 2334457888888778888888
Q ss_pred eCCEEEEE
Q 039719 143 ENGILRVT 150 (186)
Q Consensus 143 ~nGvL~I~ 150 (186)
.+|-++|.
T Consensus 140 ~~G~i~i~ 147 (166)
T PF13349_consen 140 SSGDITIE 147 (166)
T ss_pred ccccEEEE
Confidence 88888765
No 45
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=79.00 E-value=6.8 Score=31.61 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=59.6
Q ss_pred cccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEE
Q 039719 70 LALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRV 149 (186)
Q Consensus 70 ~~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I 149 (186)
..+|.+-|.+..+.+.+++.++.-+ +.+|.++. ..|+++|+.... ...|...|.|-..||+++.+-+-. +-...
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~~--d~~v~~e~-~~l~fs~k~~~d--~~~~~~~ief~~eIdpe~sk~k~~-~r~if 78 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDAK--DVHVNLEP-SKLTFSCKSGAD--NHKYENEIEFFDEIDPEKSKHKRT-SRSIF 78 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccCc--cceeeccc-cEEEEEeccCCC--ceeeEEeeehhhhcCHhhcccccc-ceEEE
Confidence 3567888999999999999998655 45556666 689999987543 346667788989999999876665 55555
Q ss_pred EEeccCc
Q 039719 150 TVPKLAE 156 (186)
Q Consensus 150 ~lPK~~~ 156 (186)
.++++..
T Consensus 79 ~i~~K~e 85 (180)
T KOG3158|consen 79 CILRKKE 85 (180)
T ss_pred EEEEccc
Confidence 5555443
No 46
>PF14913 DPCD: DPCD protein family
Probab=77.36 E-value=21 Score=29.15 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=59.9
Q ss_pred ccceeEEEECCCEEEEEEecCCCCcccEEEEEEeC-cEEEEEEEEeceeeeeEEEEEEEcCCC------CCcCceEEEEe
Q 039719 71 ALARADWMETPTIHVITLDIPVMKKDNVKIEVEEN-RVLRVSGERKTEWTFGKFWRQFRMHMS------TDLDHIKAHTE 143 (186)
Q Consensus 71 ~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~-~~L~I~g~~~~~~~~~~f~R~~~LP~~------vd~~~i~A~~~ 143 (186)
..|-+-=.++..+|+-++-==-+.++-.+|+++++ +.++|+... ..|.+.|.+|+- .+.+.++..+.
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTtN------KKYyKk~~IPDl~R~~l~l~~~~ls~~h~ 158 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTTN------KKYYKKFSIPDLDRCGLPLEQSALSFAHQ 158 (194)
T ss_pred CCCEEEEEcCccceEEEEccCCCCccceEEEEcCCCcEEEEECcC------ccceeEecCCcHHhhCCCcchhhceeeee
Confidence 34444446788899998865457888899999863 368888553 477788999952 37888888899
Q ss_pred CCEEEEEEeccC
Q 039719 144 NGILRVTVPKLA 155 (186)
Q Consensus 144 nGvL~I~lPK~~ 155 (186)
|..|.|+..|..
T Consensus 159 nNTLIIsYkKP~ 170 (194)
T PF14913_consen 159 NNTLIISYKKPK 170 (194)
T ss_pred cCeEEEEecCcH
Confidence 999999998864
No 47
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=74.40 E-value=5.1 Score=27.55 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=27.9
Q ss_pred CEEEEEEecC-CCCcccEEEEEEeCcEEEEEEE
Q 039719 82 TIHVITLDIP-VMKKDNVKIEVEENRVLRVSGE 113 (186)
Q Consensus 82 ~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~ 113 (186)
..|.=++.|| +++.+.++-++.++|.|+|++.
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCcEEEEEec
Confidence 4788899999 7999999999987689999863
No 48
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=73.77 E-value=8.2 Score=27.35 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=29.4
Q ss_pred eEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccCc
Q 039719 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAE 156 (186)
Q Consensus 121 ~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~~ 156 (186)
..|.-...|| .++.+.|+-++.||.|+|+.-+...
T Consensus 8 ~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 8 SNVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 3566668898 8999999999999999999987643
No 49
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=71.64 E-value=19 Score=30.96 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=69.6
Q ss_pred ccceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEE
Q 039719 71 ALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVT 150 (186)
Q Consensus 71 ~~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~ 150 (186)
..-+.||..++....|.|..-|.-++.-.|..++ ..|.|.-.... ...+|...+.|=.-|+++...+.+-.--..|+
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~--gna~fd~d~kLwgvvnve~s~v~m~~tkVEIs 289 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGF--GNASFDLDYKLWGVVNVEESSVVMGETKVEIS 289 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecC--CCceeeccceeeeeechhhceEEeecceEEEE
Confidence 4567899999999999999999999999998888 77888765421 13467777777777899999999999999999
Q ss_pred EeccCcc
Q 039719 151 VPKLAEE 157 (186)
Q Consensus 151 lPK~~~~ 157 (186)
++|.++.
T Consensus 290 l~k~ep~ 296 (320)
T KOG1667|consen 290 LKKAEPG 296 (320)
T ss_pred EeccCCC
Confidence 9998765
No 50
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=70.31 E-value=7.3 Score=27.19 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=26.2
Q ss_pred CEEEEEEecCCCCcccEEEEEEeCcEEEEEE
Q 039719 82 TIHVITLDIPVMKKDNVKIEVEENRVLRVSG 112 (186)
Q Consensus 82 ~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g 112 (186)
+.|.-.+.||.++.++++-++++ |.|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~d-GvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYEN-GVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEEC-CEEEEEE
Confidence 46777789999999999999988 8999984
No 51
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=70.23 E-value=8.1 Score=25.91 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=29.0
Q ss_pred CCCEEEEEEecC-CCCcccEEEEEEeCcEEEEEEE
Q 039719 80 TPTIHVITLDIP-VMKKDNVKIEVEENRVLRVSGE 113 (186)
Q Consensus 80 ~~~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~ 113 (186)
....|.-.+.|| +++.++++..+++ |.|+|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~-G~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLEN-GVLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeC-CEEEEEEc
Confidence 467899999999 7899999999999 89999853
No 52
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=69.53 E-value=9.8 Score=27.25 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=27.0
Q ss_pred CEEEEEEecC-CCCcccEEEEEEeCcEEEEEE
Q 039719 82 TIHVITLDIP-VMKKDNVKIEVEENRVLRVSG 112 (186)
Q Consensus 82 ~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g 112 (186)
..|.=++.|| +++.+.|+-.+..+|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 5677789999 899999999999559999986
No 53
>PRK10743 heat shock protein IbpA; Provisional
Probab=66.73 E-value=21 Score=27.33 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=24.6
Q ss_pred EEcCCCCCcCceEEEEeCCEEEEEEeccC
Q 039719 127 FRMHMSTDLDHIKAHTENGILRVTVPKLA 155 (186)
Q Consensus 127 ~~LP~~vd~~~i~A~~~nGvL~I~lPK~~ 155 (186)
..|| +++.+.|+-.++||+|+|..-+..
T Consensus 51 aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 51 IAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 6688 899999999999999999987654
No 54
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=66.44 E-value=25 Score=28.35 Aligned_cols=45 Identities=24% Similarity=0.468 Sum_probs=33.6
Q ss_pred cccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719 95 KDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP 152 (186)
Q Consensus 95 ~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP 152 (186)
|++++|++++ +.++++|.+ |+..+.|.-+ .++...+||.|.|...
T Consensus 13 P~~V~v~i~~-~~v~VkGp~------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGPK------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEEC-CEEEEECCC------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 6889999999 899999985 6777655432 3556678898888754
No 55
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=66.42 E-value=15 Score=25.71 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=30.0
Q ss_pred eEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccCcc
Q 039719 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEE 157 (186)
Q Consensus 121 ~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~~~ 157 (186)
..|.-.+.|| .++.+.|+-.+++|.|+|...+....
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 4666679999 68999999999999999998776543
No 56
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=65.11 E-value=12 Score=26.34 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.5
Q ss_pred CCEEEEEEecC-CCCcccEEEEEEeCcEEEEEEEEec
Q 039719 81 PTIHVITLDIP-VMKKDNVKIEVEENRVLRVSGERKT 116 (186)
Q Consensus 81 ~~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~~~~ 116 (186)
...|.-.+.|| +++.+.|+..+++ |.|+|+..+..
T Consensus 54 ~~~f~r~~~lP~~vd~~~i~a~~~~-GvL~I~~pk~~ 89 (102)
T PF00011_consen 54 YGSFERSIRLPEDVDPDKIKASYEN-GVLTITIPKKE 89 (102)
T ss_dssp SEEEEEEEE-STTB-GGG-EEEETT-SEEEEEEEBSS
T ss_pred cceEEEEEcCCCcCCcceEEEEecC-CEEEEEEEccc
Confidence 34677899999 7999999999977 89999977654
No 57
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=64.41 E-value=11 Score=26.25 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=27.6
Q ss_pred CCEEEEEEecC-CCCcccEEEEEEeCcEEEEEE
Q 039719 81 PTIHVITLDIP-VMKKDNVKIEVEENRVLRVSG 112 (186)
Q Consensus 81 ~~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g 112 (186)
...|.-.+.|| +++.+.++-++++ |.|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~n-GvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLEN-GVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEEC-CEEEEEe
Confidence 45889999999 7999999999999 8999984
No 58
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=64.35 E-value=17 Score=25.38 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=28.5
Q ss_pred EEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccC
Q 039719 122 KFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLA 155 (186)
Q Consensus 122 ~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~ 155 (186)
.|.-.+.|| .++++.|+-.+++|.|+|+--+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 566678898 899999999999999999997654
No 59
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=63.67 E-value=17 Score=25.29 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=28.4
Q ss_pred eEEEEEEEcCCCCCcCceEEEEeCCEEEEEEecc
Q 039719 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKL 154 (186)
Q Consensus 121 ~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~ 154 (186)
..|.-.+.|| +++++.|+.+++||.|+|+.-+.
T Consensus 7 d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 7 DKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4677778898 88999999999999999998764
No 60
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=63.60 E-value=14 Score=24.71 Aligned_cols=47 Identities=15% Similarity=0.318 Sum_probs=32.2
Q ss_pred cccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEec
Q 039719 95 KDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPK 153 (186)
Q Consensus 95 ~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK 153 (186)
|+.++|++++ +.+++.|... . .++.+|..|. ++...+|+.+.+....
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g------~--l~~~~~~~v~---v~~~~~~~~~~~~~~~ 48 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKG------E--LSRPIPPGVK---VEIKVEDNKITVSVLS 48 (77)
T ss_dssp STTCEEEEET-TEEEEESSSS------E--EEEEETTTEE---EEEEEETTSEEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCCE------e--EEEECCCCee---EEEEcCCCceEEEECc
Confidence 5788999999 8999998753 3 4567776543 2233568877777653
No 61
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=62.77 E-value=37 Score=27.03 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=33.2
Q ss_pred cccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719 95 KDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP 152 (186)
Q Consensus 95 ~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP 152 (186)
|++++|++++ +.++|+|.+ |+..+.+. |. .+....+++.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp~------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPK------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCC------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 6789999999 899999885 66666553 33 3455678888888854
No 62
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=62.45 E-value=28 Score=22.84 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=31.2
Q ss_pred eeEEE-ECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEE
Q 039719 74 RADWM-ETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGE 113 (186)
Q Consensus 74 ~vdi~-e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~ 113 (186)
++.+. -..+.|.|++..||+....-+|.+..+....|..+
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 45555 45789999999999999988899886466777654
No 63
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=62.18 E-value=32 Score=24.88 Aligned_cols=41 Identities=12% Similarity=0.030 Sum_probs=32.6
Q ss_pred cccceeEEEECCCEEEEEEecCCC-----CcccEEEEEEeCcEEEEE
Q 039719 70 LALARADWMETPTIHVITLDIPVM-----KKDNVKIEVEENRVLRVS 111 (186)
Q Consensus 70 ~~~p~vdi~e~~~~y~l~v~LPG~-----~~edi~V~v~~~~~L~I~ 111 (186)
...|.+.|+++++.|.|.+--+.- +++...|.-++ +.+.|.
T Consensus 23 ~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~-g~~fI~ 68 (95)
T PF12992_consen 23 NGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEED-GNLFIE 68 (95)
T ss_pred CCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeC-CEEEEe
Confidence 346899999999999999977654 77777788666 677776
No 64
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=62.00 E-value=22 Score=24.55 Aligned_cols=33 Identities=3% Similarity=0.095 Sum_probs=28.4
Q ss_pred eEEEEEEEcCCCCCcCceEEEEeCCEEEEEEecc
Q 039719 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKL 154 (186)
Q Consensus 121 ~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~ 154 (186)
..|.-.+.|| +++++.|+-.+.+|.|+|+.-+.
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4667778998 89999999999999999998654
No 65
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=61.88 E-value=21 Score=24.97 Aligned_cols=33 Identities=6% Similarity=0.078 Sum_probs=28.2
Q ss_pred eEEEEEEEcCCCCCcCceEEEEeCCEEEEEEecc
Q 039719 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKL 154 (186)
Q Consensus 121 ~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~ 154 (186)
..|.-.+.|| +++++.|+-...+|.|+|+--+.
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4666678898 89999999999999999998654
No 66
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=61.25 E-value=11 Score=30.18 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=31.8
Q ss_pred EEecC-CCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcC
Q 039719 87 TLDIP-VMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMH 130 (186)
Q Consensus 87 ~v~LP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP 130 (186)
+.-|| ||+++.|.-.+..||+|+|+|.+.... -...|.+++.
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~--~~~er~ipI~ 162 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK--QDNERSIPIE 162 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCCCc--CccceEEeEe
Confidence 45688 999999999999889999999876531 1145666654
No 67
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=61.07 E-value=31 Score=28.22 Aligned_cols=78 Identities=8% Similarity=0.155 Sum_probs=56.2
Q ss_pred eEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEE-EcCCCCCcCceEEEEeCCEEEEEEec
Q 039719 75 ADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQF-RMHMSTDLDHIKAHTENGILRVTVPK 153 (186)
Q Consensus 75 vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~-~LP~~vd~~~i~A~~~nGvL~I~lPK 153 (186)
+-|-.+++-..+-+.|-|+..|+|+|++.. +.|.|.-..-+ -.+|.-.+ .|-..|++++-+-..+-....|.+.|
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dlq---GK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kk 152 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDLQ---GKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKK 152 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecc-cceeeeeeecC---CcceeeehhhhccccChhhcccccccceEEEeehh
Confidence 445567777788999999999999999998 77877755433 12333332 45567888888777887888888866
Q ss_pred cCc
Q 039719 154 LAE 156 (186)
Q Consensus 154 ~~~ 156 (186)
.+.
T Consensus 153 Ve~ 155 (224)
T KOG3260|consen 153 VEN 155 (224)
T ss_pred hhc
Confidence 543
No 68
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=60.77 E-value=38 Score=26.98 Aligned_cols=44 Identities=27% Similarity=0.573 Sum_probs=32.9
Q ss_pred cccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719 95 KDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP 152 (186)
Q Consensus 95 ~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP 152 (186)
|++|+|++++ +.|+|+|.+ |...+.| |.. +....+++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~------G~l~~~l--~~~-----i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPK------GELSRTL--HPG-----VTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCC------eEEEEEc--CCC-----eEEEEECCEEEEEec
Confidence 6889999998 899999884 6777665 543 345568888877754
No 69
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=60.35 E-value=23 Score=23.47 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=29.1
Q ss_pred CEEEEEEecCC-CCcccEEEEEEeCcEEEEEEEEec
Q 039719 82 TIHVITLDIPV-MKKDNVKIEVEENRVLRVSGERKT 116 (186)
Q Consensus 82 ~~y~l~v~LPG-~~~edi~V~v~~~~~L~I~g~~~~ 116 (186)
+.|.+.++||+ +++++.+.++.+ +.|.|+-.+..
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~K~~ 70 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGN-GVLVFTLVKKE 70 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeC-CEEEEEEEeCC
Confidence 56999999995 799999999999 88999877654
No 70
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=59.90 E-value=23 Score=24.58 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=28.5
Q ss_pred eEEEEEEEcCCCCCcCceEEEEeCCEEEEEEecc
Q 039719 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKL 154 (186)
Q Consensus 121 ~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~ 154 (186)
..|.-.+.|| .++++.|+-+.++|.|+|+--|.
T Consensus 8 ~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 8 DTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 3677778898 89999999999999999998664
No 71
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=58.44 E-value=34 Score=26.46 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=24.7
Q ss_pred EEEcCCCCCcCceEEEEeCCEEEEEEeccC
Q 039719 126 QFRMHMSTDLDHIKAHTENGILRVTVPKLA 155 (186)
Q Consensus 126 ~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~ 155 (186)
...|| +++.+.|+-.+++|.|+|+--+..
T Consensus 48 ~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 48 TLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 36688 889999999999999999987543
No 72
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=58.13 E-value=40 Score=26.89 Aligned_cols=44 Identities=23% Similarity=0.470 Sum_probs=32.7
Q ss_pred cccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719 95 KDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP 152 (186)
Q Consensus 95 ~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP 152 (186)
|++|+|++++ +.|+|+|.+ |...+.| |.. +....+|+.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp~------G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPK------GELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------EEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 6889999999 899999884 7777766 443 344568887777644
No 73
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=57.63 E-value=35 Score=27.69 Aligned_cols=47 Identities=26% Similarity=0.423 Sum_probs=33.8
Q ss_pred cccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719 95 KDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP 152 (186)
Q Consensus 95 ~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP 152 (186)
|++++|++++ +.++|+|.+ |+..+.|.=| + ..+....+||.|.|.-+
T Consensus 13 P~~V~V~i~~-~~v~VkGp~------G~L~~~~~~~-~---~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKS-RKVTVTGKY------GELTRSFRHL-P---VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEEC-CEEEEECCC------ceEEEEecCC-C---ceEEEEeCCCEEEEEeC
Confidence 7899999999 899999884 6676655322 1 24556678888777744
No 74
>PRK10568 periplasmic protein; Provisional
Probab=57.38 E-value=81 Score=25.57 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=21.1
Q ss_pred CCCCcccEEEEEEeCcEEEEEEEEec
Q 039719 91 PVMKKDNVKIEVEENRVLRVSGERKT 116 (186)
Q Consensus 91 PG~~~edi~V~v~~~~~L~I~g~~~~ 116 (186)
++++..+|+|.+.+ |.++++|.-..
T Consensus 73 ~~i~~~~I~V~v~~-G~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQ-KVVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEEC-CEEEEEEEeCC
Confidence 56667789999998 89999999874
No 75
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=57.28 E-value=20 Score=22.98 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=20.3
Q ss_pred CCCCcccEEEEEEeCcEEEEEEEEece
Q 039719 91 PVMKKDNVKIEVEENRVLRVSGERKTE 117 (186)
Q Consensus 91 PG~~~edi~V~v~~~~~L~I~g~~~~~ 117 (186)
++++..+|+|.+.+ +.++|+|.-...
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEEESSC
T ss_pred cccCCCeEEEEEEC-CEEEEEeeCcHH
Confidence 36777789999999 899999997553
No 76
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=55.26 E-value=12 Score=24.78 Aligned_cols=33 Identities=36% Similarity=0.400 Sum_probs=15.8
Q ss_pred CceEEEEeCCEEEEEEeccCcccCCCCeEEEeccC
Q 039719 136 DHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEE 170 (186)
Q Consensus 136 ~~i~A~~~nGvL~I~lPK~~~~~~~~~k~I~I~~~ 170 (186)
+.|+|.|+||+|.--=|-.-++. ..-+|.|...
T Consensus 3 ~~I~aiYe~GvlkPl~~~~L~Eg--~~V~i~I~~~ 35 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVDLPEG--EEVKITIEEE 35 (60)
T ss_dssp --EEEEEETTEEEECS-----TT--EEEEEEE---
T ss_pred ceEEEEEECCEEEECCCCCCCCC--CEEEEEEecc
Confidence 46899999999986543332221 1245566553
No 77
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=54.63 E-value=41 Score=26.90 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=31.5
Q ss_pred cccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719 95 KDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP 152 (186)
Q Consensus 95 ~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP 152 (186)
|++|+|++++ +.|+|+|.. |+..+ .||.. +....+|+.|.|..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp~------G~l~~--~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPK------GTLSR--KIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------EEEEE--ECCCC-----eEEEEeCCEEEEEcC
Confidence 5788999999 899999885 56654 45543 445568887777654
No 78
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=53.98 E-value=27 Score=24.26 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=27.8
Q ss_pred eEEEEEEEcCCCCCcCceEEEEeCCEEEEEEecc
Q 039719 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKL 154 (186)
Q Consensus 121 ~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~ 154 (186)
..|.-.+.|| +++++.|+....+|.|+|.--+.
T Consensus 7 ~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 7 DKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred ceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 4666678897 89999999999999999998543
No 79
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=53.67 E-value=28 Score=26.53 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=27.2
Q ss_pred CEEEEEEecC-CCCcccEEEEEEeCcEEEEEEEEec
Q 039719 82 TIHVITLDIP-VMKKDNVKIEVEENRVLRVSGERKT 116 (186)
Q Consensus 82 ~~y~l~v~LP-G~~~edi~V~v~~~~~L~I~g~~~~ 116 (186)
..|.-++.|| +++.+.++-++++ |+|+|+-.+..
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~n-GvL~I~lpk~~ 134 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKN-GLLTVTLPKAE 134 (146)
T ss_pred eeEEEEEECcccccccceeeEeeC-cEEEEEEeccc
Confidence 5677888888 5788888999999 89999876643
No 80
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=53.56 E-value=25 Score=22.29 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=27.4
Q ss_pred CCEEEEEEecCC-CCcccEEEEEEeCcEEEEEEE
Q 039719 81 PTIHVITLDIPV-MKKDNVKIEVEENRVLRVSGE 113 (186)
Q Consensus 81 ~~~y~l~v~LPG-~~~edi~V~v~~~~~L~I~g~ 113 (186)
...|...+.||+ +++++++..+.+ +.|.|...
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~-~~l~i~l~ 79 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLEN-GVLEITLP 79 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEEC-CEEEEEEc
Confidence 578999999995 788899999999 89998743
No 81
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=52.97 E-value=52 Score=22.96 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=28.6
Q ss_pred eEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccC
Q 039719 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLA 155 (186)
Q Consensus 121 ~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~ 155 (186)
..|.-.+.|| .+.++.|+.+++++.|+|+.-+..
T Consensus 7 d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 7 EGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred ceEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 3566778888 889999999999999999987653
No 82
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=52.60 E-value=39 Score=23.52 Aligned_cols=34 Identities=9% Similarity=0.225 Sum_probs=29.0
Q ss_pred eEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccC
Q 039719 121 GKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLA 155 (186)
Q Consensus 121 ~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~ 155 (186)
..|.-.+.|| +++++.|+-.+.++.|+|+--+..
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 4677778898 899999999999999999986643
No 83
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=51.74 E-value=38 Score=22.10 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=29.5
Q ss_pred CCEEEEEEecCC-CCcccEEEEEEeCcEEEEEEEEec
Q 039719 81 PTIHVITLDIPV-MKKDNVKIEVEENRVLRVSGERKT 116 (186)
Q Consensus 81 ~~~y~l~v~LPG-~~~edi~V~v~~~~~L~I~g~~~~ 116 (186)
+..|.+.++|++ +++++...++.+ +.|.|.-.+..
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~-~~l~i~L~K~~ 75 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVED-RKIEITLKKKE 75 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeC-CEEEEEEEECC
Confidence 478999999996 788889999998 89999877654
No 84
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=48.22 E-value=63 Score=24.02 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=34.2
Q ss_pred eEEEEEEEcCCCC-CcCceEEEEeCCEEEEEEeccCcccCCCCeEEEeccCCC
Q 039719 121 GKFWRQFRMHMST-DLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESC 172 (186)
Q Consensus 121 ~~f~R~~~LP~~v-d~~~i~A~~~nGvL~I~lPK~~~~~~~~~k~I~I~~~~~ 172 (186)
.+|+.-|....++ +...++-.++|.++....|+.. .++|.|+..+.
T Consensus 44 ~tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~~------~~~I~Vq~Ge~ 90 (113)
T cd01759 44 NTYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKVG------AEKITVQSGKD 90 (113)
T ss_pred CEEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeEE------EEEEEEEeCCC
Confidence 4667777788888 8888888899988877666653 46799995443
No 85
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=43.72 E-value=76 Score=25.73 Aligned_cols=46 Identities=17% Similarity=0.417 Sum_probs=32.0
Q ss_pred cccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCC-CCCcCceEEEEeCCEEEEEEe
Q 039719 95 KDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHM-STDLDHIKAHTENGILRVTVP 152 (186)
Q Consensus 95 ~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~-~vd~~~i~A~~~nGvL~I~lP 152 (186)
|++|+|++++ +.|+|+|.+ |+..+. ||. .+ .+....+||.|.|.-+
T Consensus 12 P~~V~V~i~~-~~ItVkGpk------G~Ls~~--~~~~~~---~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKR------GTLTKD--LRHLQL---DFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeC-CEEEEECCC------cEEEEE--cCCCCc---EEEEEecCCEEEEEeC
Confidence 6889999999 899999885 566654 443 12 2445667788877744
No 86
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.27 E-value=11 Score=34.37 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=61.2
Q ss_pred cceeEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCC-CcCceEEEE--eCCEEE
Q 039719 72 LARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMST-DLDHIKAHT--ENGILR 148 (186)
Q Consensus 72 ~p~vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~v-d~~~i~A~~--~nGvL~ 148 (186)
.|...+..+++...|.+..|-.+..++++...+ +....+ .+.|.-+..+|..+ |...-.|+| ++|-..
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~--------~~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~ 73 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFS--------AGPYFLRLAGPGMVEDDARPNASYDAKDGYAH 73 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhc--------cchhHHhhcCcchhhhhccccCccccccceeE
Confidence 467888999999999999998888888887777 556555 67788888899887 666666766 889999
Q ss_pred EEEeccCcc
Q 039719 149 VTVPKLAEE 157 (186)
Q Consensus 149 I~lPK~~~~ 157 (186)
|.+||..+.
T Consensus 74 vK~~K~~~~ 82 (466)
T KOG3247|consen 74 VKVPKFHPG 82 (466)
T ss_pred EeecCCCcc
Confidence 999995443
No 87
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=40.39 E-value=63 Score=21.65 Aligned_cols=30 Identities=17% Similarity=0.117 Sum_probs=25.4
Q ss_pred EEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719 123 FWRQFRMHMSTDLDHIKAHTENGILRVTVP 152 (186)
Q Consensus 123 f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP 152 (186)
..-.|.+|..++.+.++..+.+.-|+|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 334578999999999999999999999986
No 88
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=39.27 E-value=15 Score=28.87 Aligned_cols=24 Identities=8% Similarity=0.201 Sum_probs=18.7
Q ss_pred cCCCCCcCceEEEEeCCEEEEEEe
Q 039719 129 MHMSTDLDHIKAHTENGILRVTVP 152 (186)
Q Consensus 129 LP~~vd~~~i~A~~~nGvL~I~lP 152 (186)
|-+.++.+.-.+.|.||||+|.++
T Consensus 65 l~e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred HHhhcCccccccccccceEEEEec
Confidence 445555566678899999999998
No 89
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=38.26 E-value=1.1e+02 Score=24.81 Aligned_cols=46 Identities=28% Similarity=0.502 Sum_probs=31.5
Q ss_pred CCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719 93 MKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTV 151 (186)
Q Consensus 93 ~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~l 151 (186)
..|++++|++++ +.++++|-+ |+..+.|. .++ +.-..+|+.+.+..
T Consensus 10 ~~P~gV~V~i~~-~~v~vkGpk------GeL~~~~~--~~~----v~v~~~~~~~vv~~ 55 (178)
T COG0097 10 VIPAGVTVSIEG-QVVTVKGPK------GELTREFH--DNV----VKVEVEDNILVVRP 55 (178)
T ss_pred ecCCCeEEEEec-cEEEEECCC------cEEEEEec--Ccc----eEEEecCCEEEEee
Confidence 348899999998 899999875 55555443 222 45566777666654
No 90
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=35.30 E-value=36 Score=20.76 Aligned_cols=14 Identities=36% Similarity=0.406 Sum_probs=11.5
Q ss_pred chhHHHHHHHHHHh
Q 039719 4 PRILAMTMLFLVMA 17 (186)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (186)
.-.+|..|+|++|+
T Consensus 4 Sl~fa~iMVPVvma 17 (41)
T PF10766_consen 4 SLAFAVIMVPVVMA 17 (41)
T ss_pred HHHHHHHHHHHHHH
Confidence 34689999999994
No 91
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=32.91 E-value=1.4e+02 Score=22.42 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=12.6
Q ss_pred CCCcCceEEEEeCCEEEEE
Q 039719 132 STDLDHIKAHTENGILRVT 150 (186)
Q Consensus 132 ~vd~~~i~A~~~nGvL~I~ 150 (186)
++..+.+.+.-.+|-++|+
T Consensus 148 ~i~~~~~~i~~~~G~i~l~ 166 (166)
T PF13349_consen 148 DISAKNLNIKTSSGDITLT 166 (166)
T ss_pred ccEeeEEEEEeeeEEEEEC
Confidence 4666677777777777653
No 92
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=31.40 E-value=1e+02 Score=30.46 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=30.7
Q ss_pred eeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEeccCcccCCCCeEEEe
Q 039719 120 FGKFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINI 167 (186)
Q Consensus 120 ~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~~~~~~~~k~I~I 167 (186)
.|-|.-..+.-+.||...++-.|++|.|++.+|-.++. ....|+|
T Consensus 731 lg~YsS~~P~~c~v~~~~~~f~y~~g~~~~~~~~~~~~---~~~~v~~ 775 (777)
T PLN02711 731 MRVFASEKPRSCKIDGEEVEFGYEDCMVVVQVPWSGSS---GLSLIEY 775 (777)
T ss_pred EEEEecCCCeEEEECCEEeeeEecCCEEEEEecCCCcC---CceeEEE
Confidence 34555444444556888888889999999999987632 3455655
No 93
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=31.15 E-value=1.8e+02 Score=20.18 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=12.4
Q ss_pred eEEEEeCCEEEEEEec
Q 039719 138 IKAHTENGILRVTVPK 153 (186)
Q Consensus 138 i~A~~~nGvL~I~lPK 153 (186)
+.+.++||-.++++-.
T Consensus 70 l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 70 LIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEECCEEEEEEEE
Confidence 5677889988888754
No 94
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=30.24 E-value=53 Score=24.02 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=14.8
Q ss_pred CceEEEEeCCEEEEEEe
Q 039719 136 DHIKAHTENGILRVTVP 152 (186)
Q Consensus 136 ~~i~A~~~nGvL~I~lP 152 (186)
..+.+.+.+|||+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 45778889999999997
No 95
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=29.06 E-value=69 Score=23.48 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=14.8
Q ss_pred ceEEEEeCCEEEEEEec
Q 039719 137 HIKAHTENGILRVTVPK 153 (186)
Q Consensus 137 ~i~A~~~nGvL~I~lPK 153 (186)
.+.+.+.+|||+|+++.
T Consensus 31 d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPD 47 (109)
T ss_dssp TEEEEEETTEEEEEETT
T ss_pred ceEEEccCCEEEEEECC
Confidence 58899999999999953
No 96
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=28.39 E-value=1.4e+02 Score=23.98 Aligned_cols=15 Identities=7% Similarity=0.397 Sum_probs=11.8
Q ss_pred eeeeEEEEEEEcCCC
Q 039719 118 WTFGKFWRQFRMHMS 132 (186)
Q Consensus 118 ~~~~~f~R~~~LP~~ 132 (186)
+.+|.|+-++.+|..
T Consensus 66 f~yG~~ear~k~~~~ 80 (212)
T cd02175 66 YGYGRYEVRMKPAKG 80 (212)
T ss_pred EEeeEEEEEEEcCCC
Confidence 578889888888853
No 97
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=27.83 E-value=53 Score=21.74 Aligned_cols=21 Identities=14% Similarity=0.503 Sum_probs=16.9
Q ss_pred CCcccEEEEEEeCcEEEEEEEE
Q 039719 93 MKKDNVKIEVEENRVLRVSGER 114 (186)
Q Consensus 93 ~~~edi~V~v~~~~~L~I~g~~ 114 (186)
|+.+.|.+.... +.|.|+|+.
T Consensus 23 f~~~~I~l~t~~-g~l~I~G~~ 43 (66)
T PF07873_consen 23 FDDEEIRLNTKK-GKLTIKGEG 43 (66)
T ss_dssp EETTEEEEEETT-EEEEEEEEE
T ss_pred ECCCEEEEEeCC-EEEEEECce
Confidence 567788888888 789999875
No 98
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=27.34 E-value=1.3e+02 Score=21.38 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCCcCceEEEEeCCEEEEEE
Q 039719 123 FWRQFRMHMSTDLDHIKAHTENGILRVTV 151 (186)
Q Consensus 123 f~R~~~LP~~vd~~~i~A~~~nGvL~I~l 151 (186)
..-+|+||.++..+.+...++..-|+|.+
T Consensus 17 V~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 17 VFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 33458899999999999999999999998
No 99
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=26.96 E-value=56 Score=23.94 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=14.1
Q ss_pred eEEEEeCCEEEEEEec
Q 039719 138 IKAHTENGILRVTVPK 153 (186)
Q Consensus 138 i~A~~~nGvL~I~lPK 153 (186)
+.+.+.+|||+|+++.
T Consensus 29 ~D~e~~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERNGGVLTLTFEN 44 (105)
T ss_pred eeeeccCCEEEEEECC
Confidence 6788999999999974
No 100
>PRK14290 chaperone protein DnaJ; Provisional
Probab=26.47 E-value=3.9e+02 Score=23.58 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=29.0
Q ss_pred EEEcCCCCCcCceEEEEeCCEEEEEEeccCcccCCCCeEEEeccCCC
Q 039719 126 QFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESC 172 (186)
Q Consensus 126 ~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~~~~~~~~k~I~I~~~~~ 172 (186)
.|+|.+.+--..+.-..-+|.++|.+|.... ...+|.|.+++-
T Consensus 277 ~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~----~g~~iri~g~G~ 319 (365)
T PRK14290 277 KINFPQAALGGEIEIKLFREKYNLKIPEGTQ----PGEVLKIKGAGM 319 (365)
T ss_pred EeCHHHHhCCCEEEEEcCCceEEEEECCccC----CCcEEEECCCCC
Confidence 4556566655666666778999999995432 256788877654
No 101
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=26.41 E-value=65 Score=23.47 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.3
Q ss_pred ceEEEEeCCEEEEEEec
Q 039719 137 HIKAHTENGILRVTVPK 153 (186)
Q Consensus 137 ~i~A~~~nGvL~I~lPK 153 (186)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 36788899999999973
No 102
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=25.70 E-value=85 Score=24.10 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.2
Q ss_pred CCCCcccEEEEEEeCcEEEEEEEEece
Q 039719 91 PVMKKDNVKIEVEENRVLRVSGERKTE 117 (186)
Q Consensus 91 PG~~~edi~V~v~~~~~L~I~g~~~~~ 117 (186)
.|+...+++|.+++ |.++++|.-...
T Consensus 38 ~~~~~~~i~V~v~~-G~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVED-GKATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeC-CEEEEEEEeCCH
Confidence 47888889999998 899999987654
No 103
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=25.24 E-value=2.3e+02 Score=22.95 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=29.2
Q ss_pred ECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEece
Q 039719 79 ETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE 117 (186)
Q Consensus 79 e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~ 117 (186)
..++.|+=++.||--..+-.++++++ ++|.|..++.++
T Consensus 133 ~~~~~~~krv~L~~~~~e~~~~t~nN-gILEIri~~~~~ 170 (177)
T PF05455_consen 133 RVGEKYLKRVALPWPDPEITSATFNN-GILEIRIRRTEE 170 (177)
T ss_pred ecCCceEeeEecCCCccceeeEEEeC-ceEEEEEeecCC
Confidence 34445667888986667778999999 899999887653
No 104
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.57 E-value=1.8e+02 Score=21.11 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=26.2
Q ss_pred eEEEECCCEEEEEEecCCCCcccEEEEEEeCcEEEEEE
Q 039719 75 ADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSG 112 (186)
Q Consensus 75 vdi~e~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g 112 (186)
+++.+.+| .|....||..+ |+|..++ +.|.|.+
T Consensus 26 ~~v~~eGD--~ivas~pgis~--ieik~E~-kkL~v~t 58 (96)
T COG4004 26 WTVSEEGD--RIVASSPGISR--IEIKPEN-KKLLVNT 58 (96)
T ss_pred eeEeeccc--EEEEecCCceE--EEEeccc-ceEEEec
Confidence 77888888 77889999864 6777777 7788886
No 105
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=22.38 E-value=79 Score=22.36 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=16.9
Q ss_pred CCcccEEEEEEeCcEEEEEEEE
Q 039719 93 MKKDNVKIEVEENRVLRVSGER 114 (186)
Q Consensus 93 ~~~edi~V~v~~~~~L~I~g~~ 114 (186)
|+++.|.+.... +.|+|+|+.
T Consensus 22 fd~~~I~l~T~~-G~L~I~G~~ 42 (85)
T TIGR02892 22 FDDEEILLETVM-GFLTIKGQE 42 (85)
T ss_pred ECCCEEEEEeCc-EEEEEEcce
Confidence 577888888888 788888874
No 106
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=22.27 E-value=1e+02 Score=20.18 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=20.9
Q ss_pred CEEEEEEecCCCCcccE-EEEEEeCcEEEE
Q 039719 82 TIHVITLDIPVMKKDNV-KIEVEENRVLRV 110 (186)
Q Consensus 82 ~~y~l~v~LPG~~~edi-~V~v~~~~~L~I 110 (186)
+.|.|.+.-+|+..... .|.+..+....+
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 78999999999999888 588875344443
No 107
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=20.96 E-value=1.9e+02 Score=23.32 Aligned_cols=50 Identities=16% Similarity=0.071 Sum_probs=27.8
Q ss_pred ccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCceEEEEeCCEEEEEEe
Q 039719 96 DNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHIKAHTENGILRVTVP 152 (186)
Q Consensus 96 edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i~A~~~nGvL~I~lP 152 (186)
..+++..+. +.+.|+|..+.- .|.- - +......=.++-+|+||.|.|.==
T Consensus 131 ~~i~v~~~~-~~V~V~Gtlkt~--vg~~---~-~~~~~k~Y~l~~~y~~G~l~L~~f 180 (188)
T PRK13726 131 TSVRVWPQY-GRVDIRGVLKTW--IGDS---K-PFTEIKHYILILKRENGVTWLDNF 180 (188)
T ss_pred eeEEEccCC-CEEEEEEEEEEE--ECCc---c-cCchheEEEEEEEEcCCEEEEEEE
Confidence 456666556 678888775421 1110 0 111122234677889999998743
No 108
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=20.88 E-value=77 Score=22.29 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=19.0
Q ss_pred CCCcccEEEEEEeCcEEEEEEEEe
Q 039719 92 VMKKDNVKIEVEENRVLRVSGERK 115 (186)
Q Consensus 92 G~~~edi~V~v~~~~~L~I~g~~~ 115 (186)
-|+.+.|.+.... +.|.|+|+.=
T Consensus 40 ~y~~~~I~l~t~~-G~l~I~G~~L 62 (85)
T TIGR02856 40 VFSPEEVKLNSTN-GKITIEGKNF 62 (85)
T ss_pred EECCCEEEEEcCc-eEEEEEcccE
Confidence 4678899999988 8999998853
No 109
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=20.83 E-value=3.4e+02 Score=20.64 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=36.7
Q ss_pred CCCEEEEEEecCCCCcccEEEEEEeCcEEEEEEEEeceeeeeEEEEEEEcCCCCCcCce--EEEEeCCEEEEEEecc
Q 039719 80 TPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQFRMHMSTDLDHI--KAHTENGILRVTVPKL 154 (186)
Q Consensus 80 ~~~~y~l~v~LPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~f~R~~~LP~~vd~~~i--~A~~~nGvL~I~lPK~ 154 (186)
.++...+++ ++..+ -.|+|.+.+ . +. .....|++.+|..|-.+.| .+.+.+ .|.+.+||-
T Consensus 36 ~~g~VsFea-i~D~~-a~V~v~~~~-~---~~--------~~~~~R~i~VPF~V~~d~i~V~Svls~-~~~~~ip~G 97 (125)
T PF11033_consen 36 ADGAVSFEA-ISDGA-AEVEVTLNE-K---FE--------AEDAQRTISVPFTVKGDGIEVSSVLSE-KLSFDIPKG 97 (125)
T ss_pred cCCcEEEee-ecCCe-EEEEEEeCC-c---cc--------CccceEEEEeeEEEcCCCEEEEEeecC-cEEEecCCC
Confidence 445555555 44443 556666655 2 11 3466899999999955665 444566 578887754
No 110
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=20.19 E-value=74 Score=22.99 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=12.3
Q ss_pred EEEEeCCEEEEEEe
Q 039719 139 KAHTENGILRVTVP 152 (186)
Q Consensus 139 ~A~~~nGvL~I~lP 152 (186)
.+.+.+|||+|+++
T Consensus 30 D~e~~~gVLti~~~ 43 (97)
T TIGR03422 30 DVEYSSGVLTLELP 43 (97)
T ss_pred ccccCCCEEEEEEC
Confidence 67789999999995
No 111
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=20.10 E-value=2.3e+02 Score=23.49 Aligned_cols=14 Identities=14% Similarity=0.193 Sum_probs=11.6
Q ss_pred eeeeEEEEEEEcCC
Q 039719 118 WTFGKFWRQFRMHM 131 (186)
Q Consensus 118 ~~~~~f~R~~~LP~ 131 (186)
+.||.|+-++.||.
T Consensus 96 ~~YG~~EaR~K~p~ 109 (258)
T cd02178 96 VKYGYFEARAKASN 109 (258)
T ss_pred eEEEEEEEEEEcCC
Confidence 47889999999985
Done!