RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 039719
(186 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 118 bits (299), Expect = 8e-35
Identities = 55/145 (37%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 36 SPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKK 95
S FD + + F I+ G A AR DW ETP HV D+P +KK
Sbjct: 7 SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 66
Query: 96 DNVKIEVEENRVLRVSGERK------------TEWTFGKFWRQFRMHMSTDLDHIKAHTE 143
+ VK+EVE+ VL VSGER E + GKF R+FR+ ++ +KA E
Sbjct: 67 EEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLE 126
Query: 144 NGILRVTVPKLAEEKKRQPEVINID 168
NG+L VTVPK +K PEV I
Sbjct: 127 NGVLTVTVPKAEVKK---PEVKAIQ 148
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 97.5 bits (244), Expect = 5e-27
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 74 RADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-------WT-----FG 121
R D E V+ D+P + +++++++ +L + GERK+E ++ +G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG 64
Query: 122 KFWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAE 156
F R+F + S D D I A NG+L + +PK
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPKRPA 99
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 97.1 bits (242), Expect = 4e-26
Identities = 18/146 (12%), Positives = 43/146 (29%), Gaps = 17/146 (11%)
Query: 36 SPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKK 95
+ + + +E + +P + K
Sbjct: 20 ATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGVNK 79
Query: 96 DNVKIEVEENRVLRVSGERKTEWT-------------FGKFWRQFRMHMSTDLDHIKAHT 142
+++ + + L + +R + +R ++ + ++ A
Sbjct: 80 EDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF 138
Query: 143 ENGILRVTVPKLAEEKKRQPEVINID 168
ENG+L V +PK K+ INI+
Sbjct: 139 ENGVLSVILPKAESSIKKG---INIE 161
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 94.6 bits (236), Expect = 1e-25
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 9/102 (8%)
Query: 68 QTLALARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKT--------EWT 119
L D E V+ D+ K+ +K V L + ER+
Sbjct: 20 YELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQR 79
Query: 120 FGKFWRQFRMHMSTDLD-HIKAHTENGILRVTVPKLAEEKKR 160
+ R+ + D I ENG+L + +P +
Sbjct: 80 PKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 63.3 bits (154), Expect = 9e-14
Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 79 ETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMST 133
P + LD+ + + ++V + + V + + +F R++R+
Sbjct: 8 TDPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHARHEERPDEHGFIAREFHRRYRLPPGV 66
Query: 134 DLDHIKAH-TENGILRVTVPK-LAEEKKRQPEVI 165
D + + + G+L + A+ P
Sbjct: 67 DPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 61.3 bits (149), Expect = 4e-13
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 85 VITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIK 139
+ LD+ + +K++V + V+ V G+ + + +F R++R+ D I
Sbjct: 9 SVNLDVKHFSPEELKVKVLGD-VIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTIT 67
Query: 140 AH-TENGILRVTVPKLAEEKKRQ 161
+ + +G+L V P+ +
Sbjct: 68 SSMSSDGVLTVNGPRKQVSGPER 90
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 59.9 bits (145), Expect = 2e-12
Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 79 ETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMST 133
VI LD+ +++ ++V+E+ V + G+ + +F R++R+ +
Sbjct: 9 SDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHGKHNERQDDHGYISREFHRRYRLPSNV 67
Query: 134 DLDHIKAH-TENGILRVTVPKLAEEKKRQPEVINI 167
D + + +G+L + PK+ I
Sbjct: 68 DQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAI 102
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 57.7 bits (140), Expect = 8e-12
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 79 ETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMST 133
T ++LD+ D + ++ ++ V ++G+ + F R++ +
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKTKDGVVE-ITGKHAARQDEHGYISRCFTRKYTLPPGV 62
Query: 134 DLDHIKAH-TENGILRVTVPK 153
D + + + G L V P
Sbjct: 63 DPTQVSSSLSPEGTLTVEAPM 83
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 58.8 bits (142), Expect = 2e-11
Identities = 21/148 (14%), Positives = 47/148 (31%), Gaps = 18/148 (12%)
Query: 29 ALTPYTQSPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITL 88
L P + P L ++ + L
Sbjct: 31 HLLESDLFPTSTSLSPFYLRPPSFLR-----------APSWFDTGLSEMRLEKDRFSVNL 79
Query: 89 DIPVMKKDNVKIEVEENRVLRVSGERKTE-----WTFGKFWRQFRMHMSTDLDHIKAH-T 142
D+ + +K++V + + V G+ + + +F R++R+ D I + +
Sbjct: 80 DVKHFSPEELKVKVLGDV-IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLS 138
Query: 143 ENGILRVTVPKLAEEKKRQPEVINIDEE 170
+G+L V P+ + I +E+
Sbjct: 139 SDGVLTVNGPRKQVSGPERTIPITREEK 166
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 49.4 bits (117), Expect = 1e-07
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 76 DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE--------WTFGKFWRQF 127
+ IH+ P +VK+ + N+V V G E +F++ F
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVY-VHGVTGKEEKTENASHSEHREFYKAF 286
Query: 128 RMHMSTDLDHIKAHTENGILRVTVPKL 154
D +A +G++ V P
Sbjct: 287 VTPEVVDASKTQAEIVDGLMVVEAPLF 313
Score = 43.3 bits (101), Expect = 2e-05
Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 10/150 (6%)
Query: 20 LTNMASQANALTPYTQ--SPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADW 77
+ NM +L P+T + F +M M+ R G A
Sbjct: 50 IVNMHRNLFSLEPFTAMDNAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGK- 108
Query: 78 METPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTE----WTFGKFWRQFRMHMST 133
+ + ++ K + + I+ ++N+ L V ++ R + S
Sbjct: 109 -DGRLHFKVYFNVKNFKAEEITIKADKNK-LVVRAQKSVACGDAAMSESVGRSIPLPPSV 166
Query: 134 DLDHIKAH-TENGILRVTVPKLAEEKKRQP 162
D +HI+A T + +L + P K
Sbjct: 167 DRNHIQATITTDDVLVIEAPVNEPNYKAIK 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.013
Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 44/174 (25%)
Query: 4 PRILAMTMLFL-VMAATLTN------------MASQANALTPYTQSPFFDMM--FP---- 44
PR L++ + AT N + S N L P FD + FP
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 45 MTEESFRVL-----EQTPLTIAKGADHHQTLALARADWME-TPTIHVITLDIPVMKKDNV 98
+ ++ + + + + +L E T +I I L++ +K +N
Sbjct: 387 IPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVEKQPKESTISIPSIYLEL-KVKLEN- 441
Query: 99 KIEVEENRVLRVSGERKTE-WTFGK-----FWRQFRMHMSTDLDHIKA--HTEN 144
+ + + V + + + ++ H H+K H E
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH------HLKNIEHPER 489
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.018
Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 72/179 (40%)
Query: 30 LTPYTQSPFFDMMFPMTEESFRVLE-----QTPLTIAKGADHHQTL----AL-ARADWME 79
T +TQ P + M + +F L+ T A G H +L AL + AD
Sbjct: 1728 ATQFTQ-P---ALTLMEKAAFEDLKSKGLIPADATFA-G--H--SLGEYAALASLAD--- 1775
Query: 80 TPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTFGKFWRQ-----------FR 128
V++++ V++ + R G + +
Sbjct: 1776 -----VMSIE------SLVEV-------VF---YR------GMTMQVAVPRDELGRSNYG 1808
Query: 129 MHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEVINIDEESCNSSNE------DIKA 181
M ++ + + A L+ V ++ + E++N N N+ D++A
Sbjct: 1809 M-IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-----NVENQQYVAAGDLRA 1861
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 29.4 bits (66), Expect = 0.21
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 74 RADWMETPTIHVITLDIPVMKKDNVKIEVEENRV 107
R ++ + P V+T+ + K NV I+ E +
Sbjct: 4 RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQIL 37
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 29.5 bits (66), Expect = 0.27
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 74 RADWMETPTIHVITLDIPVMKKDNVKIEVEENRV 107
+ DW +T + VITL I ++K++V +E E +
Sbjct: 11 KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKEL 44
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.15.1.3
Length = 134
Score = 26.6 bits (58), Expect = 3.2
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 69 TLALARADWMET-PTIHVITLDIPVMKKDNVKIEVEENRV 107
LA + D E P V+ + + + +D ++ E
Sbjct: 16 NLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDF 55
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A
{Xanthomonas campestris PV}
Length = 266
Score = 26.1 bits (58), Expect = 6.3
Identities = 10/51 (19%), Positives = 13/51 (25%), Gaps = 17/51 (33%)
Query: 39 FDMMFPMTEESFRVLEQTPLTIAKGAD--------------HHQTLALARA 75
+D+ FP R D +TL ARA
Sbjct: 144 YDLRFP---VFCRNRFDVERPGQLDFDLQLFVANWPSARAYAWKTLLRARA 191
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A
{Pseudomonas aeruginosa}
Length = 319
Score = 26.2 bits (58), Expect = 6.8
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 17/63 (26%)
Query: 37 PFFDMMFPMTEESFRVLEQ----------TPLTIAKGADHHQTLALARADWMETPTIHVI 86
F+ E+ R++EQ PLT+ G DH TL + RA + ++
Sbjct: 97 NTFN-----LLEAVRIIEQEYDRILGHGILPLTL--GGDHTITLPILRAIXKXHGXVGLV 149
Query: 87 TLD 89
+D
Sbjct: 150 HVD 152
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
1nis_A* 1nit_A
Length = 753
Score = 26.1 bits (58), Expect = 9.3
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 147 LRVTVPKLAEEKKRQPEVINIDEE---SC-NSSNEDI 179
L V ++ +++ ++I SC NSS ED+
Sbjct: 329 LAHPVAEVGSVAEKEGWPLDIRVGLIGSCTNSSYEDM 365
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.129 0.373
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,818,273
Number of extensions: 159922
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 21
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)