RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 039719
         (186 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 84.8 bits (209), Expect = 6e-22
 Identities = 56/144 (38%), Positives = 72/144 (50%), Gaps = 13/144 (9%)

Query: 36  SPFFDMMFPMTEESFRVLEQTPLTIAKGADHHQTLALARADWMETPTIHVITLDIPVMKK 95
           S  FD    +  + F         I+ G       A AR DW ETP  HV   D+P +KK
Sbjct: 6   SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 65

Query: 96  DNVKIEVEENRVLRVSGERKTEWT------------FGKFWRQFRMHMSTDLDHIKAHTE 143
           + VK+EVE+  VL VSGER  E               GKF R+FR+     ++ +KA  E
Sbjct: 66  EEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLE 125

Query: 144 NGILRVTVPKLAEEKKRQPEVINI 167
           NG+L VTVPK AE KK + + I I
Sbjct: 126 NGVLTVTVPK-AEVKKPEVKAIQI 148


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 65.0 bits (158), Expect = 8e-15
 Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 14/102 (13%)

Query: 76  DWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEW-------------TFGK 122
             +E      +   +P + K+++ +    +  L +  +R                    +
Sbjct: 14  SIIEGDQHIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEE 72

Query: 123 FWRQFRMHMSTDLDHIKAHTENGILRVTVPKLAEEKKRQPEV 164
            +R  ++  +   ++  A  ENG+L V +PK     K+   +
Sbjct: 73  IYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGINI 114


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 28.4 bits (63), Expect = 0.20
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 74  RADWMETPTIHVITLDIPVMKKDNVKIEVEENRVL 108
           + DW +T +  VITL I  ++K++V +E  E  + 
Sbjct: 4   KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELS 38


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
           USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 26.1 bits (57), Expect = 1.6
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 74  RADWMET-PTIHVITLDIPVMKKDNVKIEVEENRV 107
           + D  E  P   V+ + +  + +D  ++   E   
Sbjct: 21  KNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDF 55


>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
           dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
           subunit {Moorella thermoacetica [TaxId: 1525]}
          Length = 673

 Score = 25.2 bits (55), Expect = 6.9
 Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 13/48 (27%)

Query: 68  QTLALARADW--ME-----------TPTIHVITLDIPVMKKDNVKIEV 102
             + +A AD+               TP   V   ++ V+  D V   +
Sbjct: 232 SAIRVALADYTGEHIATDFSDILFGTPQPVVSEANMGVLDPDQVNFVL 279


>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 110

 Score = 23.8 bits (51), Expect = 7.6
 Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 1/62 (1%)

Query: 73  ARADWMETPTIHVITLDIPVMKKDNVKIEVEENRVLRVSGERKTEWTF-GKFWRQFRMHM 131
           A A W +      I   +   K  NV  E  +     + G    +       +     + 
Sbjct: 4   ASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPND 63

Query: 132 ST 133
           S 
Sbjct: 64  SK 65


>d2p0va1 a.102.1.8 (A:39-481) Hypothetical protein BT3781
          {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 443

 Score = 24.7 bits (54), Expect = 9.3
 Identities = 5/17 (29%), Positives = 6/17 (35%)

Query: 77 WMETPTIHVITLDIPVM 93
          +       V T DI  M
Sbjct: 52 FDGKEDTFVYTGDIHAM 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.129    0.373 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 668,487
Number of extensions: 28774
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 11
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)