BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039721
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 405 DDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYID 464
+D + G+A FP + MNHSCCPN + + +AV + I GEEV SYID
Sbjct: 187 EDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAV----QEIKPGEEVFTSYID 242
Query: 465 EDLPYGERQTLLAD-YGFRCSCPKC 488
P +R L D Y F C C +C
Sbjct: 243 LLYPTEDRNDRLRDSYFFTCECQEC 267
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 196 GGCGEAYYCSKSCAEADWELFHSLLCT 222
G C +A+YC+ C + DW + H L C+
Sbjct: 66 GRCKQAFYCNVECQKEDWPM-HKLECS 91
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 405 DDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYID 464
+D + G+A FP + MNHSCCPN + + +AV + I GEEV SYID
Sbjct: 187 EDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAV----QEIKPGEEVFTSYID 242
Query: 465 EDLPYGERQTLLAD-YGFRCSCPKC 488
P +R L D Y F C C +C
Sbjct: 243 LLYPTEDRNDRLRDSYFFTCECQEC 267
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 196 GGCGEAYYCSKSCAEADWELFHSLLCT 222
G C +A+YC+ C + DW + H L C+
Sbjct: 66 GRCKQAFYCNVECQKEDWPM-HKLECS 91
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 405 DDYSICCQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYID 464
+D + G+A FP + MNHSCCPN + + +AV + I GEEV SYID
Sbjct: 187 EDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAV----QEIKPGEEVFTSYID 242
Query: 465 EDLPYGERQTLLAD-YGFRCSCPKC 488
P +R L D Y F C C +C
Sbjct: 243 LLYPTEDRNDRLRDSYFFTCECQEC 267
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 196 GGCGEAYYCSKSCAEADWELFHSLLCT 222
G C +A+YC+ C + DW + H L C+
Sbjct: 66 GRCKQAFYCNVECQKEDWPM-HKLECS 91
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 413 GTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGER 472
G+A FP + MNHSCCPN + + +AV + I G+EV SYID P +R
Sbjct: 195 GSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAV----QEIHPGDEVFTSYIDLLYPTEDR 250
Query: 473 QTLLAD-YGFRCSCPKC 488
L D Y F C C +C
Sbjct: 251 NDRLRDSYFFTCECREC 267
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 196 GGCGEAYYCSKSCAEADWELFHSLLCT 222
G C +A+YC C + DW L H L C+
Sbjct: 66 GRCKQAFYCDVECQKEDWPL-HKLECS 91
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 402 ALGDDYSICCQGTAFFPLQSCMNHSCCP---------NGKAFKREEDRDGQAVIIAQRPI 452
L D + G FP +NH C P N +A K + + A I
Sbjct: 183 TLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKI 242
Query: 453 CKGEEVTISYID-EDLPYGERQTLLADYGFRCSCPKC 488
+GEE+T+SYID L R+ L Y F CSC C
Sbjct: 243 SEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHC 279
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 413 GTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVII-AQRPICKGEEVTISYIDEDLPYGE 471
G +P S +NHSC PN +G +++ A R I GEE+TI Y+D + E
Sbjct: 196 GVGLYPSISLLNHSCDPNCSIV-----FNGPHLLLRAVRDIEVGEELTICYLDMLMTSEE 250
Query: 472 RQTLLAD-YGFRCSCPKC 488
R+ L D Y F C C +C
Sbjct: 251 RRKQLRDQYCFECDCFRC 268
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 413 GTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVII-AQRPICKGEEVTISYIDEDLPYGE 471
G +P S +NHSC PN +G +++ A R I GEE+TI Y+D + E
Sbjct: 194 GVGLYPSISLLNHSCDPNCSIV-----FNGPHLLLRAVRDIEVGEELTICYLDMLMTSEE 248
Query: 472 RQTLLAD-YGFRCSCPKC 488
R+ L D Y F C C +C
Sbjct: 249 RRKQLRDQYCFECDCFRC 266
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 413 GTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVII-AQRPICKGEEVTISYIDEDLPYGE 471
G +P S +NHSC PN +G +++ A R I GEE+TI Y+D + E
Sbjct: 194 GVGLYPSISLLNHSCDPNCSIV-----FNGPHLLLRAVRDIEVGEELTICYLDMLMTSEE 248
Query: 472 RQTLLAD-YGFRCSCPKC 488
R+ L D Y F C C +C
Sbjct: 249 RRKQLRDQYCFECDCFRC 266
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 413 GTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVII-AQRPICKGEEVTISYIDEDLPYGE 471
G +P S +NHSC PN +G +++ A R I GEE+TI Y+D + E
Sbjct: 195 GVGLYPSISLLNHSCDPNCSIV-----FNGPHLLLRAVRDIEVGEELTICYLDMLMTSEE 249
Query: 472 RQTLLAD-YGFRCSCPKC 488
R+ L D Y F C C +C
Sbjct: 250 RRKQLRDQYCFECDCFRC 267
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 413 GTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVII-AQRPICKGEEVTISYIDEDLPYGE 471
G +P S +NHSC PN +G +++ A R I GEE+TI Y+D + E
Sbjct: 230 GVGLYPSISLLNHSCDPNCSIV-----FNGPHLLLRAVRDIEVGEELTICYLDMLMTSEE 284
Query: 472 RQTLLAD-YGFRCSCPKC 488
R+ L D Y F C C +C
Sbjct: 285 RRKQLRDQYCFECDCFRC 302
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 413 GTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVII-AQRPICKGEEVTISYIDEDLPYGE 471
G +P S +NHSC PN +G +++ A R I GEE+TI Y+D E
Sbjct: 195 GVGLYPSISLLNHSCDPNCSIV-----FNGPHLLLRAVRDIEVGEELTICYLDXLXTSEE 249
Query: 472 RQTLLAD-YGFRCSCPKC 488
R+ L D Y F C C +C
Sbjct: 250 RRKQLRDQYCFECDCFRC 267
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 423 MNHSCCPNGKAFKREEDRDGQA--VIIAQRPICKGEEVTISY 462
+NHSC PN + R + DGQ VI A R I +GEE+T Y
Sbjct: 128 INHSCEPN--CYSRVINIDGQKHIVIFAMRKIYRGEELTYDY 167
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 423 MNHSCCPNGKAFKREEDRDGQAV----IIAQRPICKGEEVTISYID 464
+NHSC PN F R D + + + A + I KG E+T Y++
Sbjct: 224 INHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVN 269
>pdb|1Q16|B Chain B, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
pdb|1R27|B Chain B, Crystal Structure Of Nargh Complex
pdb|1R27|D Chain D, Crystal Structure Of Nargh Complex
pdb|1SIW|B Chain B, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y5I|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
pdb|3IR5|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49c
pdb|3IR6|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49s
pdb|3IR7|B Chain B, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 512
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 420 QSCMNHSC---CPNGKAFKREEDRDGQAVIIAQRPICKGEEVTIS 461
+ C+N +C CP+G +KREED +++ + C+G + I+
Sbjct: 185 EHCLNPACVATCPSGAIYKREED----GIVLIDQDKCRGWRMCIT 225
>pdb|3EGW|B Chain B, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 509
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 420 QSCMNHSC---CPNGKAFKREEDRDGQAVIIAQRPICKGEEVTIS 461
+ C+N +C CP+G +KREED +++ + C+G + I+
Sbjct: 185 EHCLNPACVATCPSGAIYKREED----GIVLIDQDKCRGWRMCIT 225
>pdb|1Y4Z|B Chain B, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
Length = 512
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 420 QSCMNHSC---CPNGKAFKREEDRDGQAVIIAQRPICKGEEVTIS 461
+ C+N +C CP+G +KREED +++ + C+G + I+
Sbjct: 185 EHCLNPACVATCPSGAIYKREED----GIVLIDQDKCRGWRMCIT 225
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 312 DVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEI 353
DV+ D A F + IR ++ T+ LK + ++C+ + L+I
Sbjct: 63 DVNPEDFAGFPLNIRHISITTYARLKLGEYIADCDKVLYLDI 104
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 312 DVDSSDEASFRMKIRELAFTSLQLLKAAIFDSECEPLFSLEI 353
DV+ D A F + IR ++ T+ LK + ++C+ + L+I
Sbjct: 63 DVNPEDFAGFPLNIRHISITTYARLKLGEYIADCDKVLYLDI 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,851,576
Number of Sequences: 62578
Number of extensions: 621284
Number of successful extensions: 1238
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1203
Number of HSP's gapped (non-prelim): 37
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)