Query 039721
Match_columns 493
No_of_seqs 206 out of 1497
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 12:36:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2084 Predicted histone tail 99.6 9.2E-14 2E-18 148.3 17.6 76 411-490 197-274 (482)
2 PF00856 SET: SET domain; Int 99.3 4.4E-12 9.5E-17 114.0 5.6 53 411-463 110-162 (162)
3 smart00317 SET SET (Su(var)3-9 99.1 7.1E-11 1.5E-15 101.3 5.2 50 413-462 67-116 (116)
4 KOG2589 Histone tail methylase 98.4 1E-07 2.2E-12 96.3 3.1 67 413-491 189-256 (453)
5 PF01753 zf-MYND: MYND finger; 98.0 2.7E-06 5.9E-11 59.3 2.3 29 191-221 9-37 (37)
6 KOG4442 Clathrin coat binding 98.0 3.8E-06 8.1E-11 91.4 4.2 53 416-468 189-242 (729)
7 KOG1080 Histone H3 (Lys4) meth 97.9 6.5E-06 1.4E-10 94.6 4.2 50 418-467 938-987 (1005)
8 COG2940 Proteins containing SE 97.7 2.3E-05 4.9E-10 85.0 3.3 71 419-491 405-478 (480)
9 KOG1082 Histone H3 (Lys9) meth 97.2 0.00027 5.9E-09 74.0 3.4 52 415-466 267-323 (364)
10 KOG1337 N-methyltransferase [G 96.7 0.0051 1.1E-07 66.7 8.1 62 413-482 230-291 (472)
11 KOG1083 Putative transcription 96.5 0.002 4.3E-08 73.3 3.6 45 421-465 1252-1296(1306)
12 KOG1085 Predicted methyltransf 96.4 0.0022 4.7E-08 63.6 3.1 49 419-467 333-381 (392)
13 PF00856 SET: SET domain; Int 96.2 0.0027 6E-08 56.4 2.4 26 52-77 1-26 (162)
14 smart00317 SET SET (Su(var)3-9 95.4 0.019 4.1E-07 48.6 4.2 35 43-77 2-36 (116)
15 KOG1141 Predicted histone meth 95.4 0.0087 1.9E-07 66.7 2.4 60 420-486 1190-1253(1262)
16 KOG1079 Transcriptional repres 95.4 0.016 3.4E-07 63.6 4.2 47 419-465 665-711 (739)
17 KOG1338 Uncharacterized conser 94.3 0.17 3.6E-06 52.8 8.2 114 323-468 150-264 (466)
18 KOG1710 MYND Zn-finger and ank 89.8 0.078 1.7E-06 53.1 -0.7 30 191-222 331-360 (396)
19 KOG1081 Transcription factor N 89.2 0.15 3.2E-06 55.3 0.9 55 413-467 364-419 (463)
20 KOG1085 Predicted methyltransf 85.4 1.5 3.2E-05 44.1 5.2 31 39-69 254-284 (392)
21 PF12855 Ecl1: Life-span regul 79.9 0.94 2E-05 32.7 1.2 24 192-215 10-37 (43)
22 PRK00418 DNA gyrase inhibitor; 79.1 1.6 3.5E-05 34.0 2.3 25 190-215 5-39 (62)
23 PLN03158 methionine aminopepti 78.5 1.3 2.9E-05 47.1 2.3 28 191-220 20-54 (396)
24 PF13824 zf-Mss51: Zinc-finger 78.3 2.6 5.6E-05 32.1 3.1 31 190-222 13-43 (55)
25 PRK01343 zinc-binding protein; 76.4 2.5 5.4E-05 32.4 2.6 25 190-215 8-38 (57)
26 KOG4442 Clathrin coat binding 73.9 3 6.5E-05 46.6 3.5 35 35-69 114-148 (729)
27 PF04438 zf-HIT: HIT zinc fing 68.7 2.6 5.7E-05 27.9 1.0 18 191-210 13-30 (30)
28 PLN03144 Carbon catabolite rep 62.9 4.2 9E-05 45.6 1.8 27 192-220 75-108 (606)
29 PF03884 DUF329: Domain of unk 62.2 4.7 0.0001 30.9 1.4 23 192-215 3-35 (57)
30 COG3024 Uncharacterized protei 58.3 6.8 0.00015 30.6 1.7 25 190-215 6-40 (65)
31 TIGR02059 swm_rep_I cyanobacte 57.1 20 0.00043 30.7 4.4 26 441-466 74-99 (101)
32 PF09889 DUF2116: Uncharacteri 51.1 11 0.00024 29.1 1.9 22 193-215 5-31 (59)
33 PF08666 SAF: SAF domain; Int 46.3 12 0.00025 28.3 1.4 17 445-461 3-19 (63)
34 KOG3612 PHD Zn-finger protein 46.2 7.9 0.00017 42.2 0.5 25 198-223 542-566 (588)
35 PF10013 DUF2256: Uncharacteri 45.3 6.5 0.00014 28.2 -0.2 12 200-211 30-41 (42)
36 KOG2461 Transcription factor B 42.6 20 0.00044 38.2 2.9 27 440-466 120-146 (396)
37 PF08666 SAF: SAF domain; Int 38.9 21 0.00045 26.9 1.8 15 53-67 2-16 (63)
38 KOG2155 Tubulin-tyrosine ligas 38.2 24 0.00053 37.8 2.6 61 419-479 204-266 (631)
39 KOG0006 E3 ubiquitin-protein l 37.8 19 0.00042 36.8 1.7 27 190-222 334-360 (446)
40 KOG2857 Predicted MYND Zn-fing 35.7 19 0.00041 32.6 1.2 20 191-212 17-36 (157)
41 PF12961 DUF3850: Domain of Un 34.8 54 0.0012 26.4 3.5 30 28-68 7-36 (72)
42 KOG2084 Predicted histone tail 33.2 0.53 1.1E-05 50.2 -11.0 78 411-490 364-449 (482)
43 cd06555 ASCH_PF0470_like ASC-1 30.8 61 0.0013 28.2 3.5 34 28-69 7-40 (109)
44 KOG4317 Predicted Zn-finger pr 30.8 18 0.0004 36.9 0.3 24 192-222 20-43 (383)
45 KOG3362 Predicted BBOX Zn-fing 29.6 20 0.00044 32.5 0.4 24 189-214 127-150 (156)
46 KOG1338 Uncharacterized conser 26.0 41 0.00088 35.7 1.9 37 40-77 25-65 (466)
47 PF04570 DUF581: Protein of un 23.9 57 0.0012 25.1 1.8 16 199-214 37-52 (58)
48 smart00858 SAF This domain fam 23.3 52 0.0011 24.6 1.6 16 445-460 3-18 (64)
49 COG4338 Uncharacterized protei 23.2 28 0.00061 25.7 0.1 12 200-211 34-45 (54)
50 TIGR03586 PseI pseudaminic aci 20.9 58 0.0012 33.8 1.8 20 52-71 275-294 (327)
No 1
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=99.55 E-value=9.2e-14 Score=148.33 Aligned_cols=76 Identities=38% Similarity=0.631 Sum_probs=66.7
Q ss_pred cceeEeccccccCCCCCCCCceEeeeeecCCCeEEEEEcccCCCCC-eEEEeccCCCCCHHHHHHHHh-ccCeeEeCcCC
Q 039721 411 CQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGE-EVTISYIDEDLPYGERQTLLA-DYGFRCSCPKC 488 (493)
Q Consensus 411 ~~G~gLy~~~S~~NHSC~PN~~~~~~~~~~~~~~~v~AlRdI~~GE-ELtiSYid~~~~~~~Rq~~L~-~y~F~C~C~rC 488 (493)
..|.|+||..+++||||.||+.+.| .+....+++...+.+++ ||+++|++..++...||..|+ .|.|.|.|+||
T Consensus 197 ~~~~~l~~~~~~~~hsC~pn~~~~~----~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~rc 272 (482)
T KOG2084|consen 197 FLGRGLFPGSSLFNHSCFPNISVIF----DGRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPRC 272 (482)
T ss_pred cceeeecccchhcccCCCCCeEEEE----CCceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCCC
Confidence 3799999999999999999999766 35566777777777776 999999999999999999997 58899999999
Q ss_pred CC
Q 039721 489 LE 490 (493)
Q Consensus 489 ~~ 490 (493)
.+
T Consensus 273 ~d 274 (482)
T KOG2084|consen 273 LD 274 (482)
T ss_pred CC
Confidence 85
No 2
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.27 E-value=4.4e-12 Score=113.99 Aligned_cols=53 Identities=40% Similarity=0.575 Sum_probs=45.5
Q ss_pred cceeEeccccccCCCCCCCCceEeeeeecCCCeEEEEEcccCCCCCeEEEecc
Q 039721 411 CQGTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYI 463 (493)
Q Consensus 411 ~~G~gLy~~~S~~NHSC~PN~~~~~~~~~~~~~~~v~AlRdI~~GEELtiSYi 463 (493)
..+.+|||.++++||||.|||.+.+.....++.+.|+|.|||++||||||||+
T Consensus 110 ~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 110 RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 36899999999999999999999875334578999999999999999999995
No 3
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.11 E-value=7.1e-11 Score=101.35 Aligned_cols=50 Identities=38% Similarity=0.494 Sum_probs=42.4
Q ss_pred eeEeccccccCCCCCCCCceEeeeeecCCCeEEEEEcccCCCCCeEEEec
Q 039721 413 GTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISY 462 (493)
Q Consensus 413 G~gLy~~~S~~NHSC~PN~~~~~~~~~~~~~~~v~AlRdI~~GEELtiSY 462 (493)
+..+++.++++||||.||+...+....+...+.++|+|||++|||||++|
T Consensus 67 ~~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 67 ARRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 34589999999999999999876543333369999999999999999999
No 4
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.44 E-value=1e-07 Score=96.26 Aligned_cols=67 Identities=25% Similarity=0.399 Sum_probs=52.7
Q ss_pred eeEeccc-cccCCCCCCCCceEeeeeecCCCeEEEEEcccCCCCCeEEEeccCCCCCHHHHHHHHhccCeeEeCcCCCCC
Q 039721 413 GTAFFPL-QSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFRCSCPKCLEE 491 (493)
Q Consensus 413 G~gLy~~-~S~~NHSC~PN~~~~~~~~~~~~~~~v~AlRdI~~GEELtiSYid~~~~~~~Rq~~L~~y~F~C~C~rC~~e 491 (493)
..-||.. ++.+||+|.|||..+- ....++.|+++|||++|||||-=|.+...+...+ .|.|.-|++.
T Consensus 189 caqLwLGPaafINHDCrpnCkFvs---~g~~tacvkvlRDIePGeEITcFYgs~fFG~~N~---------~CeC~TCER~ 256 (453)
T KOG2589|consen 189 CAQLWLGPAAFINHDCRPNCKFVS---TGRDTACVKVLRDIEPGEEITCFYGSGFFGENNE---------ECECVTCERR 256 (453)
T ss_pred hhhheeccHHhhcCCCCCCceeec---CCCceeeeehhhcCCCCceeEEeecccccCCCCc---------eeEEeecccc
Confidence 3455553 4568999999997643 2346899999999999999999999998775554 8999998763
No 5
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.04 E-value=2.7e-06 Score=59.26 Aligned_cols=29 Identities=41% Similarity=1.155 Sum_probs=26.1
Q ss_pred CcCCCCCCCCcccccHHHHHHhHhhhhhhcc
Q 039721 191 TIPCPGGCGEAYYCSKSCAEADWELFHSLLC 221 (493)
Q Consensus 191 ~i~C~~~C~~~~YCS~eC~~~Aw~~~H~~eC 221 (493)
..+|+ +|+.+.|||++||+.+| ..|+.+|
T Consensus 9 ~~~C~-~C~~~~YCs~~Cq~~~w-~~Hk~~C 37 (37)
T PF01753_consen 9 LKRCS-RCKSVYYCSEECQRADW-PYHKFEC 37 (37)
T ss_dssp SEEET-TTSSSEESSHHHHHHHH-HHHCCTH
T ss_pred CCcCC-CCCCEEecCHHHHHHHH-HHHhhhC
Confidence 34898 99999999999999999 5699987
No 6
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=3.8e-06 Score=91.39 Aligned_cols=53 Identities=28% Similarity=0.305 Sum_probs=40.2
Q ss_pred ecccccc-CCCCCCCCceEeeeeecCCCeEEEEEcccCCCCCeEEEeccCCCCC
Q 039721 416 FFPLQSC-MNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLP 468 (493)
Q Consensus 416 Ly~~~S~-~NHSC~PN~~~~~~~~~~~~~~~v~AlRdI~~GEELtiSYid~~~~ 468 (493)
.+...|. +||||+|||.+.........+|-++|.|.|++|||||..|--..-+
T Consensus 189 ~KGnlaRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYG 242 (729)
T KOG4442|consen 189 KKGNLARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYG 242 (729)
T ss_pred ccCcHHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccccccc
Confidence 3444444 7999999998864333344578899999999999999999665433
No 7
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=97.93 E-value=6.5e-06 Score=94.58 Aligned_cols=50 Identities=34% Similarity=0.430 Sum_probs=40.5
Q ss_pred cccccCCCCCCCCceEeeeeecCCCeEEEEEcccCCCCCeEEEeccCCCC
Q 039721 418 PLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDL 467 (493)
Q Consensus 418 ~~~S~~NHSC~PN~~~~~~~~~~~~~~~v~AlRdI~~GEELtiSYid~~~ 467 (493)
.++.++||||.|||........+..+|+|+|.|+|.+|||||..|--+..
T Consensus 938 niAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e 987 (1005)
T KOG1080|consen 938 NIARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTE 987 (1005)
T ss_pred chhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccccc
Confidence 45677999999999864333445568999999999999999999977643
No 8
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=97.69 E-value=2.3e-05 Score=85.04 Aligned_cols=71 Identities=34% Similarity=0.486 Sum_probs=54.9
Q ss_pred ccccCCCCCCCCceEeeeeecCCC--eEEEEEcccCCCCCeEEEeccCCCCCHHHHHHHHh-ccCeeEeCcCCCCC
Q 039721 419 LQSCMNHSCCPNGKAFKREEDRDG--QAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLA-DYGFRCSCPKCLEE 491 (493)
Q Consensus 419 ~~S~~NHSC~PN~~~~~~~~~~~~--~~~v~AlRdI~~GEELtiSYid~~~~~~~Rq~~L~-~y~F~C~C~rC~~e 491 (493)
....+||||.||+...... .++ .+.++|+|||.+||||++.|-........+...+. .++..|.|.+|...
T Consensus 405 ~~r~~nHS~~pN~~~~~~~--~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (480)
T COG2940 405 VARFINHSCTPNCEASPIE--VNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHT 478 (480)
T ss_pred ccceeecCCCCCcceeccc--ccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCC
Confidence 3447999999999986542 333 78999999999999999999988655443333443 58999999999864
No 9
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=97.16 E-value=0.00027 Score=74.03 Aligned_cols=52 Identities=29% Similarity=0.235 Sum_probs=39.6
Q ss_pred Eecccccc-CCCCCCCCceEeeeeecCC----CeEEEEEcccCCCCCeEEEeccCCC
Q 039721 415 AFFPLQSC-MNHSCCPNGKAFKREEDRD----GQAVIIAQRPICKGEEVTISYIDED 466 (493)
Q Consensus 415 gLy~~~S~-~NHSC~PN~~~~~~~~~~~----~~~~v~AlRdI~~GEELtiSYid~~ 466 (493)
..+...+. +||||.||+.+...+.+.. -++.++|+++|.+|+|||..|....
T Consensus 267 ~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~ 323 (364)
T KOG1082|consen 267 KPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAY 323 (364)
T ss_pred hhcccccccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccc
Confidence 34454554 7999999998765443322 2678999999999999999999773
No 10
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=96.66 E-value=0.0051 Score=66.74 Aligned_cols=62 Identities=34% Similarity=0.415 Sum_probs=48.3
Q ss_pred eeEeccccccCCCCCCCCceEeeeeecCCCeEEEEEcccCCCCCeEEEeccCCCCCHHHHHHHHhccCee
Q 039721 413 GTAFFPLQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFR 482 (493)
Q Consensus 413 G~gLy~~~S~~NHSC~PN~~~~~~~~~~~~~~~v~AlRdI~~GEELtiSYid~~~~~~~Rq~~L~~y~F~ 482 (493)
-.++.|++-++||+|.+.. ..+. ..+..+.+++.++|++||||+|+|..... .+.|..|||.
T Consensus 230 ~~~L~P~~D~~NH~~~~~~-~~~~--~~d~~~~l~~~~~v~~geevfi~YG~~~N-----~eLL~~YGFv 291 (472)
T KOG1337|consen 230 NEALAPLIDLLNHSPEVIK-AGYN--QEDEAVELVAERDVSAGEEVFINYGPKSN-----AELLLHYGFV 291 (472)
T ss_pred chhhhhhHHhhccCchhcc-cccc--CCCCcEEEEEeeeecCCCeEEEecCCCch-----HHHHHhcCCC
Confidence 3588999999999999933 2222 24558999999999999999999988432 4555689995
No 11
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=96.49 E-value=0.002 Score=73.27 Aligned_cols=45 Identities=33% Similarity=0.436 Sum_probs=34.0
Q ss_pred ccCCCCCCCCceEeeeeecCCCeEEEEEcccCCCCCeEEEeccCC
Q 039721 421 SCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDE 465 (493)
Q Consensus 421 S~~NHSC~PN~~~~~~~~~~~~~~~v~AlRdI~~GEELtiSYid~ 465 (493)
-.+||||.|||........+-.++.|+|+|||.+|||||..|-..
T Consensus 1252 RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1252 RFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred cccccccCCCCccccccccceeeeeeeecCCCCCCceEEEecccc
Confidence 347999999998643211112378999999999999999998543
No 12
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=96.43 E-value=0.0022 Score=63.61 Aligned_cols=49 Identities=33% Similarity=0.379 Sum_probs=39.3
Q ss_pred ccccCCCCCCCCceEeeeeecCCCeEEEEEcccCCCCCeEEEeccCCCC
Q 039721 419 LQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDL 467 (493)
Q Consensus 419 ~~S~~NHSC~PN~~~~~~~~~~~~~~~v~AlRdI~~GEELtiSYid~~~ 467 (493)
+.-++|||=.+|+......-+....++|+|.|||.+||||+..|.|...
T Consensus 333 lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSk 381 (392)
T KOG1085|consen 333 LGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSK 381 (392)
T ss_pred chhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccch
Confidence 3457999999999754333345568999999999999999999999743
No 13
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=96.23 E-value=0.0027 Score=56.45 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=20.5
Q ss_pred CcEEEEcccCCCCcEEEEeccceeec
Q 039721 52 GKGVYAGMDFQEEELVLKDQMLAGNQ 77 (493)
Q Consensus 52 Grgl~Atr~i~~Ge~I~~E~P~v~~~ 77 (493)
||||||||+|++||+|+.+.|++...
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~ 26 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTP 26 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEH
T ss_pred CEEEEECccCCCCCEEEEECcceEEe
Confidence 99999999999999999777776643
No 14
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=95.42 E-value=0.019 Score=48.61 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=30.6
Q ss_pred eEEeeeCCCCcEEEEcccCCCCcEEEEeccceeec
Q 039721 43 IKVKQISERGKGVYAGMDFQEEELVLKDQMLAGNQ 77 (493)
Q Consensus 43 v~v~~~~~~Grgl~Atr~i~~Ge~I~~E~P~v~~~ 77 (493)
+++..++.+|+||||+++|++|++|++..+.+...
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~ 36 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITS 36 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECH
Confidence 56777788999999999999999999988888844
No 15
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=95.40 E-value=0.0087 Score=66.66 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=41.9
Q ss_pred cccCCCCCCCCceEeeeee-cCCC---eEEEEEcccCCCCCeEEEeccCCCCCHHHHHHHHhccCeeEeCc
Q 039721 420 QSCMNHSCCPNGKAFKREE-DRDG---QAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADYGFRCSCP 486 (493)
Q Consensus 420 ~S~~NHSC~PN~~~~~~~~-~~~~---~~~v~AlRdI~~GEELtiSYid~~~~~~~Rq~~L~~y~F~C~C~ 486 (493)
.-.+||||.||+.|.-.+. ..+- -+.+++.+-|++|.|||-.|-.+.-.+.. .-..|+|-
T Consensus 1190 GRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~-------keL~C~CG 1253 (1262)
T KOG1141|consen 1190 GRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVAT-------KELTCHCG 1253 (1262)
T ss_pred hhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeecccccccccc-------ceEEEecC
Confidence 3458999999987632222 1222 25678899999999999999988555443 34577774
No 16
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=95.36 E-value=0.016 Score=63.62 Aligned_cols=47 Identities=32% Similarity=0.246 Sum_probs=38.1
Q ss_pred ccccCCCCCCCCceEeeeeecCCCeEEEEEcccCCCCCeEEEeccCC
Q 039721 419 LQSCMNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDE 465 (493)
Q Consensus 419 ~~S~~NHSC~PN~~~~~~~~~~~~~~~v~AlRdI~~GEELtiSYid~ 465 (493)
.+-..|||=.|||.+..-......+|-++|.|.|++|||||..|-..
T Consensus 665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccC
Confidence 34457999999997532233567799999999999999999999875
No 17
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.17 Score=52.78 Aligned_cols=114 Identities=21% Similarity=0.196 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHHHhhhccceeeeecCcchhhHHhhhhccchhhHHHhhhhhhhhhh
Q 039721 323 MKIRELAFTSLQLLKAAIFDSECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLLHGEKKEAEKITRPILDA 402 (493)
Q Consensus 323 ~~l~~l~~~~l~lL~~al~~~~~~~~ls~e~~~~l~g~i~~N~~~i~~~sp~~~~~~~~~~l~~~~~~~~~~~~~~~~d~ 402 (493)
.+|+..+....+-+.... +.....++.|.|..+.+++.--+|.|...-..+.
T Consensus 150 aeI~~~~i~~i~pf~~~~--p~vfs~~slEdF~y~~Al~laysfdve~~~s~~~-------------------------- 201 (466)
T KOG1338|consen 150 AEIEKDFIFVIQPFKQHC--PIVFSRPSLEDFMYAYALGLAYSFDVEFLLSLDN-------------------------- 201 (466)
T ss_pred HHHHHHHHHHHHHHHHhC--cchhcccCHHHHHHHHHHHHHHheeeehhcchhh--------------------------
Confidence 444444433334444433 3344458999999999999988888853221110
Q ss_pred cCCCcCcccceeEeccccccCCCCCC-CCceEeeeeecCCCeEEEEEcccCCCCCeEEEeccCCCCC
Q 039721 403 LGDDYSICCQGTAFFPLQSCMNHSCC-PNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDLP 468 (493)
Q Consensus 403 l~~~~~~~~~G~gLy~~~S~~NHSC~-PN~~~~~~~~~~~~~~~v~AlRdI~~GEELtiSYid~~~~ 468 (493)
+..+....+.|-..-|+.-++||+=. -|+...+ .++.+.|+|.|+|++|+|+.-+|...-++
T Consensus 202 ~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y----~~NcL~mva~r~iekgdev~n~dg~~p~~ 264 (466)
T KOG1338|consen 202 LEEESEIECNGKLMTPIADFLNHDGLKANANLRY----EDNCLEMVADRNIEKGDEVDNSDGLKPMG 264 (466)
T ss_pred hhhhhccccCcccccchhhhhccchhhcccceec----cCcceeeeecCCCCCccccccccccCcch
Confidence 00111123467788899999999855 4554444 36678999999999999999999754333
No 18
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=89.78 E-value=0.078 Score=53.14 Aligned_cols=30 Identities=27% Similarity=0.892 Sum_probs=26.6
Q ss_pred CcCCCCCCCCcccccHHHHHHhHhhhhhhccc
Q 039721 191 TIPCPGGCGEAYYCSKSCAEADWELFHSLLCT 222 (493)
Q Consensus 191 ~i~C~~~C~~~~YCS~eC~~~Aw~~~H~~eC~ 222 (493)
--+|. .|+.+.||+.+||+-+|-. |+-.|.
T Consensus 331 ~KrCs-~CKav~YCdqeCQk~hWf~-HKK~C~ 360 (396)
T KOG1710|consen 331 KKRCS-QCKAVAYCDQECQKFHWFI-HKKVCS 360 (396)
T ss_pred cchhh-hhHHHHHHHHHHHHhhhHH-HHHHHH
Confidence 46898 9998899999999999965 998886
No 19
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=89.24 E-value=0.15 Score=55.28 Aligned_cols=55 Identities=31% Similarity=0.288 Sum_probs=41.3
Q ss_pred eeEecccccc-CCCCCCCCceEeeeeecCCCeEEEEEcccCCCCCeEEEeccCCCC
Q 039721 413 GTAFFPLQSC-MNHSCCPNGKAFKREEDRDGQAVIIAQRPICKGEEVTISYIDEDL 467 (493)
Q Consensus 413 G~gLy~~~S~-~NHSC~PN~~~~~~~~~~~~~~~v~AlRdI~~GEELtiSYid~~~ 467 (493)
-.+.+...+. +||||.||+.-.....-.+..+.++|.|.|+.|||+|.+|.-...
T Consensus 364 d~~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~~ 419 (463)
T KOG1081|consen 364 DAGPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNCE 419 (463)
T ss_pred ccccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeecccc
Confidence 3455666665 799999999764322223557899999999999999999987633
No 20
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=85.37 E-value=1.5 Score=44.09 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=27.7
Q ss_pred CCCceEEeeeCCCCcEEEEcccCCCCcEEEE
Q 039721 39 NCHGIKVKQISERGKGVYAGMDFQEEELVLK 69 (493)
Q Consensus 39 ~~~~v~v~~~~~~Grgl~Atr~i~~Ge~I~~ 69 (493)
...++.+++..+||||++|++.|+.||-|.+
T Consensus 254 ~~egl~~~~~dgKGRGv~a~~~F~rgdFVVE 284 (392)
T KOG1085|consen 254 TNEGLLEVYKDGKGRGVRAKVNFERGDFVVE 284 (392)
T ss_pred cccceeEEeeccccceeEeecccccCceEEE
Confidence 4578899999999999999999999998874
No 21
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=79.93 E-value=0.94 Score=32.66 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=17.6
Q ss_pred cCCCCCC----CCcccccHHHHHHhHhh
Q 039721 192 IPCPGGC----GEAYYCSKSCAEADWEL 215 (493)
Q Consensus 192 i~C~~~C----~~~~YCS~eC~~~Aw~~ 215 (493)
+-|.+.| ....|||++|+.+++..
T Consensus 10 ~~Cdk~~~~~~~~~lYCSe~Cr~~D~~~ 37 (43)
T PF12855_consen 10 IVCDKQIDPPDDGSLYCSEECRLKDQEK 37 (43)
T ss_pred HHhhccccCCCCCccccCHHHHhHhhhc
Confidence 4455455 45599999999998755
No 22
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=79.11 E-value=1.6 Score=33.97 Aligned_cols=25 Identities=40% Similarity=0.897 Sum_probs=19.2
Q ss_pred CCcCCCCCCCCc----------ccccHHHHHHhHhh
Q 039721 190 STIPCPGGCGEA----------YYCSKSCAEADWEL 215 (493)
Q Consensus 190 ~~i~C~~~C~~~----------~YCS~eC~~~Aw~~ 215 (493)
..++|| .|+-. .|||+.|+..+...
T Consensus 5 ~~v~CP-~C~k~~~w~~~~~~rPFCS~RCk~IDLg~ 39 (62)
T PRK00418 5 ITVNCP-TCGKPVEWGEISPFRPFCSKRCQLIDLGE 39 (62)
T ss_pred ccccCC-CCCCcccccCCCCcCCcccHHHHhhhHHH
Confidence 357899 88653 68999999887544
No 23
>PLN03158 methionine aminopeptidase; Provisional
Probab=78.52 E-value=1.3 Score=47.05 Aligned_cols=28 Identities=36% Similarity=0.934 Sum_probs=21.6
Q ss_pred CcCCCCCCC-------CcccccHHHHHHhHhhhhhhc
Q 039721 191 TIPCPGGCG-------EAYYCSKSCAEADWELFHSLL 220 (493)
Q Consensus 191 ~i~C~~~C~-------~~~YCS~eC~~~Aw~~~H~~e 220 (493)
.++|| .|. ...|||.+|.+.+|.. |+..
T Consensus 20 ~l~Cp-~C~k~~~~~~~s~fCsq~CFk~~w~~-Hk~~ 54 (396)
T PLN03158 20 HLQCP-KCLELKLPREGASFCSQDCFKAAWSS-HKSV 54 (396)
T ss_pred cccCc-cchhcCCCCCCceeECHHHHHHHHHH-HHHH
Confidence 47898 772 2589999999999987 6443
No 24
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=78.34 E-value=2.6 Score=32.05 Aligned_cols=31 Identities=35% Similarity=0.710 Sum_probs=26.1
Q ss_pred CCcCCCCCCCCcccccHHHHHHhHhhhhhhccc
Q 039721 190 STIPCPGGCGEAYYCSKSCAEADWELFHSLLCT 222 (493)
Q Consensus 190 ~~i~C~~~C~~~~YCS~eC~~~Aw~~~H~~eC~ 222 (493)
..+.|| .|++..|||++=-+.+. ++|+-.|.
T Consensus 13 v~~~Cp-~cGipthcS~ehw~~D~-e~H~~~c~ 43 (55)
T PF13824_consen 13 VNFECP-DCGIPTHCSEEHWEDDY-EEHRQLCE 43 (55)
T ss_pred cCCcCC-CCCCcCccCHHHHHHhH-HHHHHHHH
Confidence 357999 99999999998877776 46988997
No 25
>PRK01343 zinc-binding protein; Provisional
Probab=76.38 E-value=2.5 Score=32.38 Aligned_cols=25 Identities=40% Similarity=1.008 Sum_probs=19.0
Q ss_pred CCcCCCCCCCC------cccccHHHHHHhHhh
Q 039721 190 STIPCPGGCGE------AYYCSKSCAEADWEL 215 (493)
Q Consensus 190 ~~i~C~~~C~~------~~YCS~eC~~~Aw~~ 215 (493)
+.+.|| .|+. ..|||+.|+..+...
T Consensus 8 p~~~CP-~C~k~~~~~~rPFCS~RC~~iDLg~ 38 (57)
T PRK01343 8 PTRPCP-ECGKPSTREAYPFCSERCRDIDLNR 38 (57)
T ss_pred CCCcCC-CCCCcCcCCCCcccCHHHhhhhHHH
Confidence 347888 8854 489999999887543
No 26
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.90 E-value=3 Score=46.62 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=31.4
Q ss_pred hcccCCCceEEeeeCCCCcEEEEcccCCCCcEEEE
Q 039721 35 ISTRNCHGIKVKQISERGKGVYAGMDFQEEELVLK 69 (493)
Q Consensus 35 ~~~~~~~~v~v~~~~~~Grgl~Atr~i~~Ge~I~~ 69 (493)
.+++..++|+|+.+..||-||.|..+|++|..|++
T Consensus 114 FQkkqyA~vevF~Te~KG~GLRA~~dI~~g~FI~E 148 (729)
T KOG4442|consen 114 FQKKQYAKVEVFLTEKKGCGLRAEEDIPKGQFILE 148 (729)
T ss_pred hhhhccCceeEEEecCcccceeeccccCCCcEEee
Confidence 35567788999999999999999999999999996
No 27
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=68.70 E-value=2.6 Score=27.92 Aligned_cols=18 Identities=44% Similarity=1.182 Sum_probs=12.9
Q ss_pred CcCCCCCCCCcccccHHHHH
Q 039721 191 TIPCPGGCGEAYYCSKSCAE 210 (493)
Q Consensus 191 ~i~C~~~C~~~~YCS~eC~~ 210 (493)
...|| +|+. .|||-+|.+
T Consensus 13 kY~Cp-~C~~-~~CSl~C~k 30 (30)
T PF04438_consen 13 KYRCP-RCGA-RYCSLACYK 30 (30)
T ss_dssp SEE-T-TT---EESSHHHHH
T ss_pred EEECC-CcCC-ceeCcEeEC
Confidence 47899 9999 999999964
No 28
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=62.87 E-value=4.2 Score=45.59 Aligned_cols=27 Identities=37% Similarity=1.030 Sum_probs=21.0
Q ss_pred cCCCCCC---C----CcccccHHHHHHhHhhhhhhc
Q 039721 192 IPCPGGC---G----EAYYCSKSCAEADWELFHSLL 220 (493)
Q Consensus 192 i~C~~~C---~----~~~YCS~eC~~~Aw~~~H~~e 220 (493)
++|| .| + ...|||.+|.+.+|.. |+..
T Consensus 75 lqCp-~C~k~~~~~~~s~fCsq~CFk~~w~~-Hk~~ 108 (606)
T PLN03144 75 LQCV-GCVKAKLPVSKSYHCSPKCFSDAWRH-HRVL 108 (606)
T ss_pred ccCc-cchhcCCCcCcceeeCHHHHHHHHHH-HHHH
Confidence 7888 76 2 2489999999999976 7543
No 29
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=62.23 E-value=4.7 Score=30.91 Aligned_cols=23 Identities=35% Similarity=0.883 Sum_probs=14.3
Q ss_pred cCCCCCCCC----------cccccHHHHHHhHhh
Q 039721 192 IPCPGGCGE----------AYYCSKSCAEADWEL 215 (493)
Q Consensus 192 i~C~~~C~~----------~~YCS~eC~~~Aw~~ 215 (493)
++|| .|+- ..|||+.|+..+...
T Consensus 3 v~CP-~C~k~~~~~~~n~~rPFCS~RCk~iDLg~ 35 (57)
T PF03884_consen 3 VKCP-ICGKPVEWSPENPFRPFCSERCKLIDLGR 35 (57)
T ss_dssp EE-T-TT--EEE-SSSSS--SSSSHHHHHHHHS-
T ss_pred ccCC-CCCCeecccCCCCcCCcccHhhcccCHHH
Confidence 4677 7743 359999999887543
No 30
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.34 E-value=6.8 Score=30.60 Aligned_cols=25 Identities=44% Similarity=0.995 Sum_probs=18.7
Q ss_pred CCcCCCCCCCC----------cccccHHHHHHhHhh
Q 039721 190 STIPCPGGCGE----------AYYCSKSCAEADWEL 215 (493)
Q Consensus 190 ~~i~C~~~C~~----------~~YCS~eC~~~Aw~~ 215 (493)
..++|| .|+. -.|||+.|+..+...
T Consensus 6 ~~v~CP-~Cgkpv~w~~~s~frPFCSkRCklIDLg~ 40 (65)
T COG3024 6 ITVPCP-TCGKPVVWGEESPFRPFCSKRCKLIDLGE 40 (65)
T ss_pred ccccCC-CCCCcccccccCCcCcchhHhhhhcchhh
Confidence 357888 8853 469999999887654
No 31
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=57.11 E-value=20 Score=30.68 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.2
Q ss_pred CCeEEEEEcccCCCCCeEEEeccCCC
Q 039721 441 DGQAVIIAQRPICKGEEVTISYIDED 466 (493)
Q Consensus 441 ~~~~~v~AlRdI~~GEELtiSYid~~ 466 (493)
+.++.|.-.|.|..||++++||.+..
T Consensus 74 ~ktVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 74 NTTITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred ccEEEEEecccccCCCEEEEEeeCCC
Confidence 44899999999999999999999874
No 32
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=51.14 E-value=11 Score=29.09 Aligned_cols=22 Identities=36% Similarity=0.901 Sum_probs=15.6
Q ss_pred CCCCCCCC-----cccccHHHHHHhHhh
Q 039721 193 PCPGGCGE-----AYYCSKSCAEADWEL 215 (493)
Q Consensus 193 ~C~~~C~~-----~~YCS~eC~~~Aw~~ 215 (493)
.|+ .|+. ..|||++|++.-+..
T Consensus 5 HC~-~CG~~Ip~~~~fCS~~C~~~~~k~ 31 (59)
T PF09889_consen 5 HCP-VCGKPIPPDESFCSPKCREEYRKR 31 (59)
T ss_pred cCC-cCCCcCCcchhhhCHHHHHHHHHH
Confidence 466 6653 379999999886543
No 33
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=46.26 E-value=12 Score=28.28 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=12.4
Q ss_pred EEEEcccCCCCCeEEEe
Q 039721 445 VIIAQRPICKGEEVTIS 461 (493)
Q Consensus 445 ~v~AlRdI~~GEELtiS 461 (493)
+++|.|||++|+.|+-+
T Consensus 3 vvVA~~di~~G~~i~~~ 19 (63)
T PF08666_consen 3 VVVAARDIPAGTVITAE 19 (63)
T ss_dssp EEEESSTB-TT-BECTT
T ss_pred EEEEeCccCCCCEEccC
Confidence 58899999999998543
No 34
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=46.18 E-value=7.9 Score=42.23 Aligned_cols=25 Identities=32% Similarity=0.850 Sum_probs=21.4
Q ss_pred CCCcccccHHHHHHhHhhhhhhcccc
Q 039721 198 CGEAYYCSKSCAEADWELFHSLLCTG 223 (493)
Q Consensus 198 C~~~~YCS~eC~~~Aw~~~H~~eC~~ 223 (493)
|=.+.|||-+||+.+|.. |+.-|..
T Consensus 542 CWNTSYCsveCQQ~HW~~-H~ksCrr 566 (588)
T KOG3612|consen 542 CWNTSYCSVECQQGHWPE-HRKSCRR 566 (588)
T ss_pred hccccccCcchhhccchh-Hhhhhcc
Confidence 444799999999999975 9999974
No 35
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.32 E-value=6.5 Score=28.15 Aligned_cols=12 Identities=42% Similarity=0.946 Sum_probs=9.7
Q ss_pred CcccccHHHHHH
Q 039721 200 EAYYCSKSCAEA 211 (493)
Q Consensus 200 ~~~YCS~eC~~~ 211 (493)
.+.|||+.|+..
T Consensus 30 ~VkYCS~rCR~~ 41 (42)
T PF10013_consen 30 EVKYCSDRCRRR 41 (42)
T ss_pred hhccHHHHhccC
Confidence 469999999853
No 36
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=42.61 E-value=20 Score=38.19 Aligned_cols=27 Identities=22% Similarity=0.128 Sum_probs=24.5
Q ss_pred CCCeEEEEEcccCCCCCeEEEeccCCC
Q 039721 440 RDGQAVIIAQRPICKGEEVTISYIDED 466 (493)
Q Consensus 440 ~~~~~~v~AlRdI~~GEELtiSYid~~ 466 (493)
.+..|..+++|+|++||||.+=|.+..
T Consensus 120 ~~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 120 IGENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred ccCceEEEecccCCCCCeEEEEeccch
Confidence 467899999999999999999999984
No 37
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=38.88 E-value=21 Score=26.87 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=11.6
Q ss_pred cEEEEcccCCCCcEE
Q 039721 53 KGVYAGMDFQEEELV 67 (493)
Q Consensus 53 rgl~Atr~i~~Ge~I 67 (493)
+-++|+++|++|++|
T Consensus 2 ~vvVA~~di~~G~~i 16 (63)
T PF08666_consen 2 RVVVAARDIPAGTVI 16 (63)
T ss_dssp SEEEESSTB-TT-BE
T ss_pred cEEEEeCccCCCCEE
Confidence 468999999999999
No 38
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.20 E-value=24 Score=37.77 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=43.7
Q ss_pred ccccCCCCCCCCceEe-eeeecCC-CeEEEEEcccCCCCCeEEEeccCCCCCHHHHHHHHhcc
Q 039721 419 LQSCMNHSCCPNGKAF-KREEDRD-GQAVIIAQRPICKGEEVTISYIDEDLPYGERQTLLADY 479 (493)
Q Consensus 419 ~~S~~NHSC~PN~~~~-~~~~~~~-~~~~v~AlRdI~~GEELtiSYid~~~~~~~Rq~~L~~y 479 (493)
..|.+-||=.||..+. |-+.+.+ .--.+..+|++..|||||-.+....-....|...|..|
T Consensus 204 fGsrvrHsdePnf~~aPf~fmPq~vaYsimwp~k~~~tgeE~trDfasg~~~p~~Rk~~l~pW 266 (631)
T KOG2155|consen 204 FGSRVRHSDEPNFRIAPFMFMPQNVAYSIMWPTKPVNTGEEITRDFASGVIHPEWRKYILQPW 266 (631)
T ss_pred hhhhhccCCCCcceeeeheecchhcceeEEeeccCCCCchHHHHHHhhcCCCHHHHHHHhccc
Confidence 5677899999998753 2222322 23468899999999999998877766666777766543
No 39
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=37.78 E-value=19 Score=36.80 Aligned_cols=27 Identities=41% Similarity=1.123 Sum_probs=22.2
Q ss_pred CCcCCCCCCCCcccccHHHHHHhHhhhhhhccc
Q 039721 190 STIPCPGGCGEAYYCSKSCAEADWELFHSLLCT 222 (493)
Q Consensus 190 ~~i~C~~~C~~~~YCS~eC~~~Aw~~~H~~eC~ 222 (493)
..+.|++||++ .||-+ |.+. ||--+|.
T Consensus 334 rkvtC~~gCgf-~FCR~-C~e~----yh~geC~ 360 (446)
T KOG0006|consen 334 RKVTCEGGCGF-AFCRE-CKEA----YHEGECS 360 (446)
T ss_pred CcccCCCCchh-HhHHH-HHhh----hccccce
Confidence 46889988999 99954 8654 8999997
No 40
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=35.67 E-value=19 Score=32.65 Aligned_cols=20 Identities=35% Similarity=0.891 Sum_probs=17.2
Q ss_pred CcCCCCCCCCcccccHHHHHHh
Q 039721 191 TIPCPGGCGEAYYCSKSCAEAD 212 (493)
Q Consensus 191 ~i~C~~~C~~~~YCS~eC~~~A 212 (493)
..+|| .|.+ .|||--|.+.+
T Consensus 17 KYKCp-kC~v-PYCSl~CfKiH 36 (157)
T KOG2857|consen 17 KYKCP-KCSV-PYCSLPCFKIH 36 (157)
T ss_pred hccCC-CCCC-ccccchhhhhc
Confidence 36899 9999 99999997664
No 41
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=34.81 E-value=54 Score=26.38 Aligned_cols=30 Identities=23% Similarity=0.552 Sum_probs=25.4
Q ss_pred HHHHHHhhcccCCCceEEeeeCCCCcEEEEcccCCCCcEEE
Q 039721 28 QEYFDQLISTRNCHGIKVKQISERGKGVYAGMDFQEEELVL 68 (493)
Q Consensus 28 ~~y~~~l~~~~~~~~v~v~~~~~~Grgl~Atr~i~~Ge~I~ 68 (493)
..||+...+| .+.+||+.+ .|+++.||+|.
T Consensus 7 p~yF~~V~~G--~KtfEiRkN---------DRdf~VGD~L~ 36 (72)
T PF12961_consen 7 PEYFEAVLSG--RKTFEIRKN---------DRDFQVGDILV 36 (72)
T ss_pred HHHHHHHHCC--CceEEEEec---------CCCCCCCCEEE
Confidence 4899999998 568899986 47899999886
No 42
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=33.16 E-value=0.53 Score=50.21 Aligned_cols=78 Identities=31% Similarity=0.409 Sum_probs=60.8
Q ss_pred cceeEeccccccCC--CCCCCCceEeeeeecCCC--eEEEEEcccCCCCCeEEEeccCCCCCHHHHH---HHHh-ccCee
Q 039721 411 CQGTAFFPLQSCMN--HSCCPNGKAFKREEDRDG--QAVIIAQRPICKGEEVTISYIDEDLPYGERQ---TLLA-DYGFR 482 (493)
Q Consensus 411 ~~G~gLy~~~S~~N--HSC~PN~~~~~~~~~~~~--~~~v~AlRdI~~GEELtiSYid~~~~~~~Rq---~~L~-~y~F~ 482 (493)
..+.+++++.++++ |+|.||....... +.. ...+.+++++.+|.++++.|.+.......|. ..+. ++.+.
T Consensus 364 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (482)
T KOG2084|consen 364 LKLHLLFILGSLLGAFLSCSPNAELERLL--NLFECRELLKALRDVKPGEEPLIAYLDYELGKLARELREKVLAEDALKD 441 (482)
T ss_pred HHHHHHHHHHHHHhhhhccchhhHHHHHH--HhhhhhHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhcCcch
Confidence 46889999999999 9999999875432 222 6678999999999999999999866655543 3343 68999
Q ss_pred EeCcCCCC
Q 039721 483 CSCPKCLE 490 (493)
Q Consensus 483 C~C~rC~~ 490 (493)
|.|..|..
T Consensus 442 ~~~~~~~~ 449 (482)
T KOG2084|consen 442 CKCIMCLA 449 (482)
T ss_pred hHHHHHHH
Confidence 99887754
No 43
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=30.82 E-value=61 Score=28.17 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=27.1
Q ss_pred HHHHHHhhcccCCCceEEeeeCCCCcEEEEcccCCCCcEEEE
Q 039721 28 QEYFDQLISTRNCHGIKVKQISERGKGVYAGMDFQEEELVLK 69 (493)
Q Consensus 28 ~~y~~~l~~~~~~~~v~v~~~~~~Grgl~Atr~i~~Ge~I~~ 69 (493)
.+||..+.+| .+.+|||..+.+- ++|++||.|.=
T Consensus 7 ~~~F~~I~~G--~KtiEiRlnD~kr------~~ikvGD~I~f 40 (109)
T cd06555 7 EEPFELIKSG--KKTIEIRLNDEKR------QQIKVGDKILF 40 (109)
T ss_pred hHHHHHHHcC--CCEEEEEecccch------hcCCCCCEEEE
Confidence 4899999998 5689999865543 78999998873
No 44
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=30.78 E-value=18 Score=36.89 Aligned_cols=24 Identities=38% Similarity=0.980 Sum_probs=19.8
Q ss_pred cCCCCCCCCcccccHHHHHHhHhhhhhhccc
Q 039721 192 IPCPGGCGEAYYCSKSCAEADWELFHSLLCT 222 (493)
Q Consensus 192 i~C~~~C~~~~YCS~eC~~~Aw~~~H~~eC~ 222 (493)
..|| +|+. .|||-.|-+. |+.-|.
T Consensus 20 YtCP-RCn~-~YCsl~CYr~-----h~~~Cs 43 (383)
T KOG4317|consen 20 YTCP-RCNL-LYCSLKCYRN-----HKHSCS 43 (383)
T ss_pred ccCC-CCCc-cceeeeeecC-----CCccch
Confidence 6899 9999 9999999776 444486
No 45
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=29.58 E-value=20 Score=32.52 Aligned_cols=24 Identities=38% Similarity=0.825 Sum_probs=19.5
Q ss_pred CCCcCCCCCCCCcccccHHHHHHhHh
Q 039721 189 PSTIPCPGGCGEAYYCSKSCAEADWE 214 (493)
Q Consensus 189 ~~~i~C~~~C~~~~YCS~eC~~~Aw~ 214 (493)
.....|. +||. .|||..|++.+.+
T Consensus 127 ~S~ysC~-~CG~-kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 127 DSKYSCV-NCGT-KYCSVRCLKTHNE 150 (156)
T ss_pred CchhHHH-hcCC-ceeechhhhhccc
Confidence 4556787 9999 9999999987654
No 46
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.00 E-value=41 Score=35.68 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=25.7
Q ss_pred CCceEEeeeC--C--CCcEEEEcccCCCCcEEEEeccceeec
Q 039721 40 CHGIKVKQIS--E--RGKGVYAGMDFQEEELVLKDQMLAGNQ 77 (493)
Q Consensus 40 ~~~v~v~~~~--~--~Grgl~Atr~i~~Ge~I~~E~P~v~~~ 77 (493)
+++|.+..-+ . -|+|++||.+|++||.+|. -|=.+++
T Consensus 25 SpKi~~ndl~~v~~~~G~g~vAtesIkkgE~Lf~-~prdsvL 65 (466)
T KOG1338|consen 25 SPKIDNNDLPWVERIAGAGIVATESIKKGESLFA-YPRDSVL 65 (466)
T ss_pred cccccccccchhhhhcccceeeehhhcCCceEEE-ecCccEE
Confidence 3556665422 2 3999999999999999997 4433433
No 47
>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins.
Probab=23.87 E-value=57 Score=25.13 Aligned_cols=16 Identities=25% Similarity=0.711 Sum_probs=12.7
Q ss_pred CCcccccHHHHHHhHh
Q 039721 199 GEAYYCSKSCAEADWE 214 (493)
Q Consensus 199 ~~~~YCS~eC~~~Aw~ 214 (493)
+...|||.+|+.....
T Consensus 37 Gd~aFCS~ECR~~qi~ 52 (58)
T PF04570_consen 37 GDKAFCSEECRSQQIL 52 (58)
T ss_pred cccccccHHHHHHHHH
Confidence 4558999999988763
No 48
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=23.26 E-value=52 Score=24.56 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=13.9
Q ss_pred EEEEcccCCCCCeEEE
Q 039721 445 VIIAQRPICKGEEVTI 460 (493)
Q Consensus 445 ~v~AlRdI~~GEELti 460 (493)
.++|.|+|++|+.|+-
T Consensus 3 v~va~~~i~~G~~i~~ 18 (64)
T smart00858 3 VVVAARDLPAGEVITA 18 (64)
T ss_pred EEEEeCccCCCCCcch
Confidence 5788999999999885
No 49
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.22 E-value=28 Score=25.71 Aligned_cols=12 Identities=42% Similarity=0.949 Sum_probs=9.7
Q ss_pred CcccccHHHHHH
Q 039721 200 EAYYCSKSCAEA 211 (493)
Q Consensus 200 ~~~YCS~eC~~~ 211 (493)
++.|||+.|+..
T Consensus 34 eVKyCSeRCrr~ 45 (54)
T COG4338 34 EVKYCSERCRRL 45 (54)
T ss_pred HHHHHHHHHHHH
Confidence 469999999843
No 50
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.91 E-value=58 Score=33.85 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=18.3
Q ss_pred CcEEEEcccCCCCcEEEEec
Q 039721 52 GKGVYAGMDFQEEELVLKDQ 71 (493)
Q Consensus 52 Grgl~Atr~i~~Ge~I~~E~ 71 (493)
+|+|||.|+|++|++|-.|.
T Consensus 275 rrsl~a~~di~~G~~it~~~ 294 (327)
T TIGR03586 275 RRSLYVVKDIKKGETFTEEN 294 (327)
T ss_pred eEEEEEccCcCCCCEecHHh
Confidence 79999999999999998766
Done!