BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039722
         (196 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W7E|A Chain A, Nmr Ensemble Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
 pdb|1W7D|A Chain A, Nmr Structure Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
          Length = 137

 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 10/120 (8%)

Query: 62  AEMMIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVP-R 120
           A  +++ L  D  FT+F P+  AF    +  V D L  +N       L+ IL +  VP  
Sbjct: 24  AAGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEK----LTEILTYHVVPGE 79

Query: 121 TLSSIMVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIM 180
            +SS +    E ++ +++ G  L ++   +G   VN V   + D+     VIH++DGV+M
Sbjct: 80  VMSSDLT---EGMTAETVEGGALTVTL--EGGPKVNGVSISQPDVDASNGVIHVIDGVLM 134


>pdb|3L15|A Chain A, Human Tead2 Transcriptional Factor
 pdb|3L15|B Chain B, Human Tead2 Transcriptional Factor
          Length = 231

 Score = 32.0 bits (71), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 129 FGEEISYDSLSGLTLYISK--SSDGKLLVNRVESERLDLKKGKIVIHIM 175
           +G    Y+SL   TL  S    S GK +V +VE+ER  L+ G+ V  ++
Sbjct: 111 YGVSSQYESLEHXTLTCSSKVCSFGKQVVEKVETERAQLEDGRFVYRLL 159


>pdb|2G5X|A Chain A, Crystal Structure Of Lychnin A Type 1 Ribosome
           Inactivating Protein (Rip)
          Length = 234

 Score = 27.3 bits (59), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 46  TSIHGEVYRREEIGKFAEMMIEMLPEDLAF 75
           T+++G+V+  + + KFA + I+M+ E   F
Sbjct: 145 TAVYGKVFTGKNVAKFALISIQMVAEAARF 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,793,190
Number of Sequences: 62578
Number of extensions: 169017
Number of successful extensions: 475
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 5
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)