Query 039722
Match_columns 196
No_of_seqs 98 out of 102
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 12:37:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 100.0 1.3E-40 2.9E-45 280.2 8.8 124 54-184 53-184 (187)
2 smart00554 FAS1 Four repeated 100.0 2.9E-28 6.2E-33 176.6 7.8 98 76-182 1-99 (99)
3 PF02469 Fasciclin: Fasciclin 99.9 1.5E-26 3.3E-31 172.6 8.1 110 65-181 15-128 (128)
4 KOG1437 Fasciclin and related 98.9 2.2E-09 4.9E-14 105.2 5.3 109 65-183 532-643 (682)
5 KOG1437 Fasciclin and related 98.8 2.6E-09 5.5E-14 104.8 4.6 102 66-181 398-507 (682)
6 cd00563 Dtyr_deacylase D-Tyros 50.2 3.6 7.7E-05 34.2 -1.0 26 54-79 118-143 (145)
7 TIGR00256 D-tyrosyl-tRNA(Tyr) 49.0 3.4 7.5E-05 34.2 -1.3 25 55-79 119-143 (145)
8 PRK05273 D-tyrosyl-tRNA(Tyr) d 47.1 3.7 8E-05 34.2 -1.4 27 55-81 119-145 (147)
9 KOG3323 D-Tyr-tRNA (Tyr) deacy 45.1 4.3 9.2E-05 34.1 -1.3 28 55-82 121-148 (149)
10 PF02580 Tyr_Deacylase: D-Tyr- 41.2 2.6 5.5E-05 34.8 -3.2 25 55-79 119-143 (145)
11 PTZ00120 D-tyrosyl-tRNA(Tyr) d 41.1 5.5 0.00012 33.4 -1.2 28 55-82 121-148 (154)
12 COG1490 Dtd D-Tyr-tRNAtyr deac 40.5 7.8 0.00017 32.5 -0.4 25 55-79 119-143 (145)
13 PF13345 DUF4098: Domain of un 34.1 93 0.002 20.5 4.2 33 140-173 23-55 (76)
14 PF06024 DUF912: Nucleopolyhed 33.8 26 0.00056 26.9 1.5 18 15-32 61-78 (101)
15 PF13345 DUF4098: Domain of un 31.8 79 0.0017 20.9 3.5 24 150-173 51-74 (76)
16 PF12575 DUF3753: Protein of u 28.7 37 0.00079 25.5 1.5 32 7-38 40-71 (72)
17 PF15176 LRR19-TM: Leucine-ric 28.6 31 0.00067 27.5 1.2 24 16-39 18-41 (102)
18 PF13349 DUF4097: Domain of un 27.8 1E+02 0.0022 23.8 3.9 32 142-174 134-165 (166)
19 PF13677 MotB_plug: Membrane M 27.7 45 0.00098 23.2 1.8 21 16-36 19-39 (58)
20 PRK10476 multidrug resistance 24.9 45 0.00098 29.6 1.7 38 1-40 1-38 (346)
21 PF12073 DUF3553: Protein of u 24.1 1.3E+02 0.0029 21.3 3.6 28 134-161 19-46 (52)
22 PRK12585 putative monovalent c 23.3 44 0.00094 29.4 1.2 32 13-44 5-36 (197)
23 COG1105 FruK Fructose-1-phosph 23.2 2E+02 0.0042 26.7 5.5 88 65-167 151-242 (310)
24 smart00363 S4 S4 RNA-binding d 23.2 1E+02 0.0022 18.8 2.7 21 150-170 25-45 (60)
25 TIGR03061 pip_yhgE_Nterm YhgE/ 22.1 1.3E+02 0.0029 23.8 3.8 31 61-91 64-95 (164)
26 KOG1419 Voltage-gated K+ chann 21.6 56 0.0012 33.2 1.8 22 24-45 299-320 (654)
27 PF11026 DUF2721: Protein of u 20.1 30 0.00065 27.5 -0.4 28 6-33 56-83 (130)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-40 Score=280.24 Aligned_cols=124 Identities=23% Similarity=0.358 Sum_probs=115.7
Q ss_pred hhhhcCchhHH--------HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeecc
Q 039722 54 RREEIGKFAEM--------MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSI 125 (196)
Q Consensus 54 ~a~~~G~F~tl--------Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aa 125 (196)
.+.+.|+|.|+ |+++|.+.||||||||||+||++||++|++.|++||| +++|++||+||||+|+++++
T Consensus 53 ~a~~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen----~~~L~~iLtYHVv~Gk~~~~ 128 (187)
T COG2335 53 SAANNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPEN----KPLLTKILTYHVVEGKITAA 128 (187)
T ss_pred HHccCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccc----hhhhheeeEEEEEcCcccHH
Confidence 46689999999 9999999999999999999999999999999999997 56899999999999999999
Q ss_pred ccCCCccceeecccCcEEEEEEeCCCcEEEcceeeeeeccccCCcEEEEecccccChhh
Q 039722 126 MVPFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAEF 184 (196)
Q Consensus 126 dv~~g~~~~~~Tv~G~~L~V~~~~~G~v~Vn~a~V~~aDI~asNGVIHVID~VlmP~ef 184 (196)
|+.... +++|++|..+.|..+ +|+++||+|+|+++||.++||||||||+|||||+.
T Consensus 129 ~l~~~~--~v~t~~G~~~~i~~~-~~~~~Vn~a~v~~~di~a~NgvIhvID~Vl~Pp~~ 184 (187)
T COG2335 129 DLKSSG--SVKTVQGADLKIKVT-GGGVYVNDATVTIADINASNGVIHVIDKVLIPPMD 184 (187)
T ss_pred Hhhccc--cceeecCceEEEEEc-CCcEEEeeeEEEeccEeccCcEEEEEeeeccCCCc
Confidence 998543 689999999999987 56699999999999999999999999999999974
No 2
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.95 E-value=2.9e-28 Score=176.61 Aligned_cols=98 Identities=30% Similarity=0.441 Sum_probs=87.8
Q ss_pred EEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCccceeecccCcEEEEEEeCC-CcEE
Q 039722 76 TIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYISKSSD-GKLL 154 (196)
Q Consensus 76 TVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~~~~~Tv~G~~L~V~~~~~-G~v~ 154 (196)
|+|||+|+||++++....+.+.. + + .|+++|.||++||+++++++..+. .+.|++|++|.++...+ +.++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~-~-----~-~l~~ll~~Hiv~~~~~~~~l~~~~--~~~Tl~g~~l~v~~~~~~~~i~ 71 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLA-D-----P-KLKNLLLYHVVPGRLSSADLLNGG--TLPTLAGSKLRVTRSGDSGTVT 71 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhC-C-----H-HHHHHHHhcEeCceEcHHHhccCC--ccccCCCCEEEEEEeCCCCeEE
Confidence 89999999999998877766642 2 3 799999999999999999998754 68999999999998744 7899
Q ss_pred EcceeeeeeccccCCcEEEEecccccCh
Q 039722 155 VNRVESERLDLKKGKIVIHIMDGVIMDA 182 (196)
Q Consensus 155 Vn~a~V~~aDI~asNGVIHVID~VlmP~ 182 (196)
||+++++.+||.++|||||+||+||+||
T Consensus 72 in~~~v~~~di~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 72 VNGARIVEADIAATNGVVHVIDRVLLPP 99 (99)
T ss_pred EcceEEEECCEecCCeEEEEECceeCCC
Confidence 9999999999999999999999999996
No 3
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.93 E-value=1.5e-26 Score=172.64 Aligned_cols=110 Identities=26% Similarity=0.449 Sum_probs=92.7
Q ss_pred HHHhc-CCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCccceeec-ccCcE
Q 039722 65 MIEML-PEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDS-LSGLT 142 (196)
Q Consensus 65 Lvd~L-~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~~~~~T-v~G~~ 142 (196)
|.+.| ...++||+|||+|+||++++..+.+.+.. .++.|.++|.||+|||.++.+++..+.. .++| ++|+.
T Consensus 15 l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~------~~~~l~~~l~~hiv~~~~~~~~l~~~~~-~~~t~~~g~~ 87 (128)
T PF02469_consen 15 LADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLAD------SKEQLKSLLKYHIVPGSITSSDLRNGKQ-TLETLLNGQP 87 (128)
T ss_dssp CHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHT------HHHHHHHHHHHTEEES---HCHHHCHHE-EEEBSSTTCE
T ss_pred CHHHHhcCCCCEEEEEECHHHHHhccccccchhhh------hhhhHhhhhhhEEEcCceehhhhccccc-cceeccCCCE
Confidence 56677 77799999999999999998888777753 2679999999999999999999987621 5888 99999
Q ss_pred EEEEEe-CCCcEEEcc-eeeeeeccccCCcEEEEecccccC
Q 039722 143 LYISKS-SDGKLLVNR-VESERLDLKKGKIVIHIMDGVIMD 181 (196)
Q Consensus 143 L~V~~~-~~G~v~Vn~-a~V~~aDI~asNGVIHVID~VlmP 181 (196)
+.+... .+|.+.||+ ++|+..|+.++||+||+||+||+|
T Consensus 88 ~~v~~~~~~~~~~v~~~a~i~~~~~~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 88 LRVSSSPSNGTIYVNGKARIVKSDIEASNGVIHIIDDVLIP 128 (128)
T ss_dssp EEEEEEGGTTEEEECCEEEESEEEEEESSEEEEEESS-TSS
T ss_pred EEEEEEecCCceEecCceEEEeCCEEeCCEEEEEECceECc
Confidence 999886 479999999 999999999999999999999998
No 4
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.86 E-value=2.2e-09 Score=105.18 Aligned_cols=109 Identities=24% Similarity=0.303 Sum_probs=80.2
Q ss_pred HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCccce---eecccCc
Q 039722 65 MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEIS---YDSLSGL 141 (196)
Q Consensus 65 Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~~~---~~Tv~G~ 141 (196)
+-++|..++-||+||||++||.+-..+... +. .+-.|..+|.||+||+... -++......+ -.+.+|.
T Consensus 532 l~e~l~~~~~~t~fvPt~ka~~~~~~~~~~--~~------~~~~l~~~l~yH~v~~~~~-ls~~~~~~v~~~~k~s~~~~ 602 (682)
T KOG1437|consen 532 LPEELTPEGNYTLFVPTNKAWQKSTKDEKS--LF------HKKALQDFLKYHLVPGQSR-LSLGSSPYVMIQVKLSLRGD 602 (682)
T ss_pred ChhhhccCCceEEEeecccccccCCcchhh--cc------hHHHHHHHHHhccccceee-eecccccceeeeeeEEEecc
Confidence 455567888999999999999999776554 21 1347999999999999984 2222211101 2455666
Q ss_pred EEEEEEeCCCcEEEcceeeeeeccccCCcEEEEecccccChh
Q 039722 142 TLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAE 183 (196)
Q Consensus 142 ~L~V~~~~~G~v~Vn~a~V~~aDI~asNGVIHVID~VlmP~e 183 (196)
.+-++.- ....-||-.+.+-.||...|||+|+||.|+-|+.
T Consensus 603 ~~~~~~~-~~~~~vn~e~~~~~~i~~~n~~~h~i~~vl~p~~ 643 (682)
T KOG1437|consen 603 HLFFSLV-NPRGDVNKERLVGIDIMGTNGVVHVIDLVLKPPD 643 (682)
T ss_pred cEEeeee-ccccceeeeeeeccceeeecceeEEEEEEcccCc
Confidence 6666542 3455678888999999999999999999999984
No 5
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.83 E-value=2.6e-09 Score=104.79 Aligned_cols=102 Identities=21% Similarity=0.246 Sum_probs=78.5
Q ss_pred HHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCccceeecccCcEEEE
Q 039722 66 IEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYI 145 (196)
Q Consensus 66 vd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~~~~~Tv~G~~L~V 145 (196)
.+.|..++-+|.|+|+|.||+++++.- . .+.+..||.||++|-++.+++.-+|.. .++|+.|..+-.
T Consensus 398 l~~L~~n~e~t~~lp~n~~fd~~~~~~-------~-----r~l~~qIL~~HII~~~~~~~~~y~~~~-~v~t~g~~~l~~ 464 (682)
T KOG1437|consen 398 LTALAPNDEATLLLPTNNLFDDLTPLE-------S-----RRLAEQILYNHIIPEYLTSSSMYNGQT-TVRTLGKNKLLY 464 (682)
T ss_pred eEEEcCCCceEEeeehhhhccCCChhh-------h-----HHHHHHHHHHhCcchhhhhhhhhcccc-eeeccCCeEEEE
Confidence 344666666999999999999975421 1 235889999999999999999988876 789999987766
Q ss_pred EEeCCC-------cEEEcc-eeeeeeccccCCcEEEEecccccC
Q 039722 146 SKSSDG-------KLLVNR-VESERLDLKKGKIVIHIMDGVIMD 181 (196)
Q Consensus 146 ~~~~~G-------~v~Vn~-a~V~~aDI~asNGVIHVID~VlmP 181 (196)
-+- .+ .+.++| +.++.+|+...||+||+||+|+-|
T Consensus 465 fv~-r~~~s~~~t~i~~~~~~~Ii~aDi~~~nGvvH~id~vl~p 507 (682)
T KOG1437|consen 465 FVY-RHSVSANVTDILIGNEACIIEADISVKNGVVHIIDRVLDP 507 (682)
T ss_pred EEe-cccccccceeeeccceeeEEecccceecCceEEeeEEcCc
Confidence 332 11 122222 458899999999999999999998
No 6
>cd00563 Dtyr_deacylase D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not in archea; beta barrel-like fold structure; forms homodimers in which two surface cavities serve as the active site for tRNA binding
Probab=50.16 E-value=3.6 Score=34.15 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=23.0
Q ss_pred hhhhcCchhHHHHHhcCCCCceEEEe
Q 039722 54 RREEIGKFAEMMIEMLPEDLAFTIFV 79 (196)
Q Consensus 54 ~a~~~G~F~tlLvd~L~g~GPFTVFA 79 (196)
...+.|.||.+|.=-|..|||+|+..
T Consensus 118 ~~V~~G~FGa~M~V~l~NDGPvTi~l 143 (145)
T cd00563 118 IKVETGVFGAMMQVSLVNDGPVTIIL 143 (145)
T ss_pred CcceeCccCCCcEEEEEECCCEEEEE
Confidence 36789999999999999999999863
No 7
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=48.97 E-value=3.4 Score=34.24 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.5
Q ss_pred hhhcCchhHHHHHhcCCCCceEEEe
Q 039722 55 REEIGKFAEMMIEMLPEDLAFTIFV 79 (196)
Q Consensus 55 a~~~G~F~tlLvd~L~g~GPFTVFA 79 (196)
..+.|.||.+|.=.|-.+||+|+..
T Consensus 119 ~V~~G~FGa~M~V~l~NdGPvTi~l 143 (145)
T TIGR00256 119 KVQTGRFAADMQVSLTNDGPVTFWL 143 (145)
T ss_pred CceECccCCCcEEEEEECCCEEEEE
Confidence 5789999999999999999999853
No 8
>PRK05273 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=47.08 E-value=3.7 Score=34.17 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=24.0
Q ss_pred hhhcCchhHHHHHhcCCCCceEEEeCC
Q 039722 55 REEIGKFAEMMIEMLPEDLAFTIFVPS 81 (196)
Q Consensus 55 a~~~G~F~tlLvd~L~g~GPFTVFAPT 81 (196)
..+.|.||.+|.=-|..|||+|+-.-|
T Consensus 119 ~V~~G~FGa~M~V~l~NDGPvTi~ld~ 145 (147)
T PRK05273 119 PVETGRFGADMQVSLVNDGPVTFLLDS 145 (147)
T ss_pred ceeecccCCCcEEEEEECCCEEEEEec
Confidence 578999999999999999999987644
No 9
>KOG3323 consensus D-Tyr-tRNA (Tyr) deacylase [Translation, ribosomal structure and biogenesis]
Probab=45.08 E-value=4.3 Score=34.15 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=24.0
Q ss_pred hhhcCchhHHHHHhcCCCCceEEEeCCh
Q 039722 55 REEIGKFAEMMIEMLPEDLAFTIFVPSV 82 (196)
Q Consensus 55 a~~~G~F~tlLvd~L~g~GPFTVFAPTd 82 (196)
..+-|.||.||.=-|..+||||+---|+
T Consensus 121 ~ikdG~fGamm~v~l~n~GPvTi~~es~ 148 (149)
T KOG3323|consen 121 KIKDGKFGAMMQVHLVNDGPVTILLESP 148 (149)
T ss_pred hhhccccceEEEEEEecCCCeEEEecCC
Confidence 4577999999999999999999976554
No 10
>PF02580 Tyr_Deacylase: D-Tyr-tRNA(Tyr) deacylase; InterPro: IPR003732 This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterisation with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0019478 D-amino acid catabolic process, 0005737 cytoplasm; PDB: 3LMU_F 3LMT_B 3KNF_B 3KOC_C 3KNP_D 3KO9_F 3KO3_B 3KO5_C 3KOB_D 3LMV_E ....
Probab=41.25 E-value=2.6 Score=34.83 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=19.0
Q ss_pred hhhcCchhHHHHHhcCCCCceEEEe
Q 039722 55 REEIGKFAEMMIEMLPEDLAFTIFV 79 (196)
Q Consensus 55 a~~~G~F~tlLvd~L~g~GPFTVFA 79 (196)
..+.|.||.+|.=.|..+||||+..
T Consensus 119 ~V~~G~FGa~M~V~l~NdGPvTi~l 143 (145)
T PF02580_consen 119 KVKTGVFGADMQVSLVNDGPVTIIL 143 (145)
T ss_dssp CEEE--TTS-EEEEEEEEEEEEEEE
T ss_pred ceeECccCCeeEEEEEeCCCEEEEE
Confidence 5667999999999999999999874
No 11
>PTZ00120 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=41.12 E-value=5.5 Score=33.37 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=25.2
Q ss_pred hhhcCchhHHHHHhcCCCCceEEEeCCh
Q 039722 55 REEIGKFAEMMIEMLPEDLAFTIFVPSV 82 (196)
Q Consensus 55 a~~~G~F~tlLvd~L~g~GPFTVFAPTd 82 (196)
..+.|.||.+|.=.|-.|||+|+..-|+
T Consensus 121 ~V~~G~FGa~M~V~l~NdGPvTi~lds~ 148 (154)
T PTZ00120 121 KIKTGKFGQYMNVSLVNDGPVTIILDSK 148 (154)
T ss_pred ccEECcCCCCcEEEEEECCCEEEEEEcC
Confidence 5889999999999999999999987664
No 12
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=40.53 E-value=7.8 Score=32.52 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.2
Q ss_pred hhhcCchhHHHHHhcCCCCceEEEe
Q 039722 55 REEIGKFAEMMIEMLPEDLAFTIFV 79 (196)
Q Consensus 55 a~~~G~F~tlLvd~L~g~GPFTVFA 79 (196)
-++.|.|+.+|-=.|-++||.|+..
T Consensus 119 ~V~tG~FgA~M~V~LvNdGPVTi~l 143 (145)
T COG1490 119 KVETGRFGADMQVSLVNDGPVTILL 143 (145)
T ss_pred cceeeeeeceeEEEEecCCCeEEEE
Confidence 3678999999999999999999864
No 13
>PF13345 DUF4098: Domain of unknown function (DUF4098)
Probab=34.10 E-value=93 Score=20.51 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=14.0
Q ss_pred CcEEEEEEeCCCcEEEcceeeeeeccccCCcEEE
Q 039722 140 GLTLYISKSSDGKLLVNRVESERLDLKKGKIVIH 173 (196)
Q Consensus 140 G~~L~V~~~~~G~v~Vn~a~V~~aDI~asNGVIH 173 (196)
+..+.+... +|.+.+.+.......+...+|=|+
T Consensus 23 ~~~~~i~~~-~G~i~i~~~~~~~~~~~~~~G~i~ 55 (76)
T PF13345_consen 23 ADNLDISSG-SGDIDIQNVESSSIKVSTSSGDIS 55 (76)
T ss_pred eceEEEEeC-CCCEEEEEeeeeeeeeeccccCEE
Confidence 333444432 344444444433444444444444
No 14
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=33.77 E-value=26 Score=26.86 Aligned_cols=18 Identities=11% Similarity=0.517 Sum_probs=11.7
Q ss_pred cceehhhHhhhhhHHhhh
Q 039722 15 SICFVLVVVSVCCLSILI 32 (196)
Q Consensus 15 ~i~~~~~~~~v~~~~~~~ 32 (196)
..+++..++++||++|++
T Consensus 61 ~~iili~lls~v~IlVil 78 (101)
T PF06024_consen 61 GNIILISLLSFVCILVIL 78 (101)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 345666677777777665
No 15
>PF13345 DUF4098: Domain of unknown function (DUF4098)
Probab=31.80 E-value=79 Score=20.88 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=13.9
Q ss_pred CCcEEEcceeeeeeccccCCcEEE
Q 039722 150 DGKLLVNRVESERLDLKKGKIVIH 173 (196)
Q Consensus 150 ~G~v~Vn~a~V~~aDI~asNGVIH 173 (196)
.|.+.+++...-..++...+|=|+
T Consensus 51 ~G~i~~~~~~~~~~~i~t~~G~i~ 74 (76)
T PF13345_consen 51 SGDISLEGTEAGNVDISTSSGDIS 74 (76)
T ss_pred ccCEEEeccceEEEEEEecceeEE
Confidence 455666655555666666666554
No 16
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=28.74 E-value=37 Score=25.53 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=20.3
Q ss_pred ccceeccccceehhhHhhhhhHHhhhhhhhcc
Q 039722 7 RRCHILKNSICFVLVVVSVCCLSILIFSMLRL 38 (196)
Q Consensus 7 ~~~~~~k~~i~~~~~~~~v~~~~~~~~~~~~l 38 (196)
+++..+-|++.++..++.+.|+.++.+-.|++
T Consensus 40 ~~~~~~~~~~~~ii~ii~v~ii~~l~flYLK~ 71 (72)
T PF12575_consen 40 NKNNKNFNWIILIISIIFVLIIVLLTFLYLKL 71 (72)
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444455667777788877777776655543
No 17
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=28.55 E-value=31 Score=27.52 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=19.6
Q ss_pred ceehhhHhhhhhHHhhhhhhhccC
Q 039722 16 ICFVLVVVSVCCLSILIFSMLRLP 39 (196)
Q Consensus 16 i~~~~~~~~v~~~~~~~~~~~~lp 39 (196)
-++|+|++++.+++++|+-.-|-|
T Consensus 18 ~~LVGVv~~al~~SlLIalaaKC~ 41 (102)
T PF15176_consen 18 PFLVGVVVTALVTSLLIALAAKCP 41 (102)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhH
Confidence 468999999999999998766544
No 18
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=27.85 E-value=1e+02 Score=23.78 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=26.4
Q ss_pred EEEEEEeCCCcEEEcceeeeeeccccCCcEEEE
Q 039722 142 TLYISKSSDGKLLVNRVESERLDLKKGKIVIHI 174 (196)
Q Consensus 142 ~L~V~~~~~G~v~Vn~a~V~~aDI~asNGVIHV 174 (196)
.|.+... .|.+.+++.++-..++.+++|=|++
T Consensus 134 ~i~i~~~-~G~i~i~~i~~~~~~i~~~~G~i~l 165 (166)
T PF13349_consen 134 KIDIKTS-SGDITIEDISAKNLNIKTSSGDITL 165 (166)
T ss_pred EEEEEec-cccEEEEccEeeEEEEEeeeEEEEE
Confidence 6677764 5899999999889999999998775
No 19
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=27.74 E-value=45 Score=23.20 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=15.7
Q ss_pred ceehhhHhhhhhHHhhhhhhh
Q 039722 16 ICFVLVVVSVCCLSILIFSML 36 (196)
Q Consensus 16 i~~~~~~~~v~~~~~~~~~~~ 36 (196)
|.|.=++....||||+++++=
T Consensus 19 vtyaDlmTLLl~fFVlL~s~s 39 (58)
T PF13677_consen 19 VTYADLMTLLLAFFVLLFSMS 39 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555556777888999998873
No 20
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=24.93 E-value=45 Score=29.56 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=24.0
Q ss_pred CcccccccceeccccceehhhHhhhhhHHhhhhhhhccCC
Q 039722 1 MELTKKRRCHILKNSICFVLVVVSVCCLSILIFSMLRLPD 40 (196)
Q Consensus 1 ~~~~~~~~~~~~k~~i~~~~~~~~v~~~~~~~~~~~~lp~ 40 (196)
||-|.||++|.+ .+.++.+++++.|+..++++....|.
T Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (346)
T PRK10476 1 MESTPKKSPRKK--LPALAIVALAIVALVFVIWRTDSAPS 38 (346)
T ss_pred CCCCCCCCCccc--chhHHHHHHHHHHHHHHheccCceEe
Confidence 788888888654 55555566666666555555555443
No 21
>PF12073 DUF3553: Protein of unknown function (DUF3553); InterPro: IPR021938 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 60 amino acids in length. This protein has two conserved sequence motifs: GQVQS and TVNF.
Probab=24.15 E-value=1.3e+02 Score=21.29 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=23.6
Q ss_pred eeecccCcEEEEEEeCCCcEEEcceeee
Q 039722 134 SYDSLSGLTLYISKSSDGKLLVNRVESE 161 (196)
Q Consensus 134 ~~~Tv~G~~L~V~~~~~G~v~Vn~a~V~ 161 (196)
++.|..|.+++|.-..-|+++||++.|.
T Consensus 19 qVqS~i~~rvTVnF~~aGK~vI~~~~v~ 46 (52)
T PF12073_consen 19 QVQSNIGGRVTVNFEHAGKKVIDGSRVA 46 (52)
T ss_pred EEEEecCCeEEEeeccCCeEEEeccEEE
Confidence 5778889999998876699999998854
No 22
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.26 E-value=44 Score=29.41 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=26.3
Q ss_pred cccceehhhHhhhhhHHhhhhhhhccCCCccC
Q 039722 13 KNSICFVLVVVSVCCLSILIFSMLRLPDISLG 44 (196)
Q Consensus 13 k~~i~~~~~~~~v~~~~~~~~~~~~lp~~~~~ 44 (196)
-+-|+.+++++..+.+++-.+.++|||+.-.+
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlRfPD~YtR 36 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIRLPDVYTR 36 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 35577788888888888999999999998654
No 23
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=23.24 E-value=2e+02 Score=26.73 Aligned_cols=88 Identities=22% Similarity=0.175 Sum_probs=60.1
Q ss_pred HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeecc-ccCCCccceeecc--cC-
Q 039722 65 MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSI-MVPFGEEISYDSL--SG- 140 (196)
Q Consensus 65 Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aa-dv~~g~~~~~~Tv--~G- 140 (196)
|++.++..|.|.++--|.+|+.+..+.. =.++||+. +.|+.+++--. ... |+... +..+ +|
T Consensus 151 li~~~~~~g~~vilD~Sg~~L~~~L~~~-P~lIKPN~-----~EL~~~~g~~~-----~~~~d~i~~----a~~l~~~g~ 215 (310)
T COG1105 151 LIRILRQQGAKVILDTSGEALLAALEAK-PWLIKPNR-----EELEALFGREL-----TTLEDVIKA----ARELLAEGI 215 (310)
T ss_pred HHHHHHhcCCeEEEECChHHHHHHHccC-CcEEecCH-----HHHHHHhCCCC-----CChHHHHHH----HHHHHHCCC
Confidence 7778888899999999999998888777 45889873 45777765322 111 22110 1111 12
Q ss_pred cEEEEEEeCCCcEEEcceeeeeecccc
Q 039722 141 LTLYISKSSDGKLLVNRVESERLDLKK 167 (196)
Q Consensus 141 ~~L~V~~~~~G~v~Vn~a~V~~aDI~a 167 (196)
+.+-||..++|.+++++..+..+.+..
T Consensus 216 ~~ViVSlG~~Gal~~~~~~~~~a~~p~ 242 (310)
T COG1105 216 ENVIVSLGADGALLVTAEGVYFASPPK 242 (310)
T ss_pred CEEEEEecCcccEEEccCCeEEEeCCC
Confidence 356678877899999999888887554
No 24
>smart00363 S4 S4 RNA-binding domain.
Probab=23.17 E-value=1e+02 Score=18.81 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=11.8
Q ss_pred CCcEEEcceeeeeeccccCCc
Q 039722 150 DGKLLVNRVESERLDLKKGKI 170 (196)
Q Consensus 150 ~G~v~Vn~a~V~~aDI~asNG 170 (196)
.|.+.|||..+...+-....|
T Consensus 25 ~g~i~vng~~~~~~~~~l~~g 45 (60)
T smart00363 25 QGRVKVNGKKVTKPSYIVKPG 45 (60)
T ss_pred cCCEEECCEEecCCCeEeCCC
Confidence 366777777653444444443
No 25
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=22.08 E-value=1.3e+02 Score=23.81 Aligned_cols=31 Identities=6% Similarity=-0.055 Sum_probs=19.7
Q ss_pred hhHHHHHhcCCCCceEEEeC-ChHHHHHhhhh
Q 039722 61 FAEMMIEMLPEDLAFTIFVP-SVKAFDRELKL 91 (196)
Q Consensus 61 F~tlLvd~L~g~GPFTVFAP-TdeAFaklp~g 91 (196)
++..+++.|.....|.+..- .++|=+.+-.+
T Consensus 64 ~s~~l~~~l~~~~~~~~~~~~~~ea~~~l~~g 95 (164)
T TIGR03061 64 AGDDLVKELKKNDDLDWHFVSAKEAEKGLADG 95 (164)
T ss_pred hHHHHHHHHhcCCCcceEEcCHHHHHHHhHcC
Confidence 48889999998887776542 23444444333
No 26
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=21.62 E-value=56 Score=33.16 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.6
Q ss_pred hhhhHHhhhhhhhccCCCccCC
Q 039722 24 SVCCLSILIFSMLRLPDISLGS 45 (196)
Q Consensus 24 ~v~~~~~~~~~~~~lp~~~~~~ 45 (196)
-+|||.++.||||.||...++.
T Consensus 299 laa~fsligiSFFALPAGILGS 320 (654)
T KOG1419|consen 299 LAACFSLIGISFFALPAGILGS 320 (654)
T ss_pred HHHHHHHHHHHHHhcccccccc
Confidence 4799999999999999988876
No 27
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=20.07 E-value=30 Score=27.46 Aligned_cols=28 Identities=25% Similarity=0.656 Sum_probs=20.3
Q ss_pred cccceeccccceehhhHhhhhhHHhhhh
Q 039722 6 KRRCHILKNSICFVLVVVSVCCLSILIF 33 (196)
Q Consensus 6 ~~~~~~~k~~i~~~~~~~~v~~~~~~~~ 33 (196)
+||.++++++|.+...-...||+.++..
T Consensus 56 ~rR~~li~~ai~~~~~s~ll~~l~i~~l 83 (130)
T PF11026_consen 56 RRRARLIRRAITLATLSALLVCLVILLL 83 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999988776666666655443
Done!