Query 039722
Match_columns 196
No_of_seqs 98 out of 102
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 21:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w7d_A Fasciclin-like protein; 100.0 2.9E-37 9.8E-42 238.6 6.1 111 65-183 27-137 (137)
2 2vxp_A Transforming growth fac 100.0 2.8E-35 9.5E-40 226.3 9.8 116 56-180 9-132 (132)
3 1nyo_A Immunogenic protein MPT 100.0 5.3E-33 1.8E-37 222.2 7.2 104 67-182 59-162 (163)
4 1o70_A Fasciclin I, FAS I, FCN 99.9 1.9E-27 6.5E-32 204.1 6.7 124 57-186 167-314 (324)
5 1o70_A Fasciclin I, FAS I, FCN 99.9 3.2E-27 1.1E-31 202.7 6.4 110 65-183 38-158 (324)
6 2kd2_A FAS apoptotic inhibitor 46.7 31 0.0011 25.9 4.9 47 137-183 18-92 (94)
7 1j7g_A D-tyrosyl-tRNA(Tyr) dea 38.2 1.7 5.9E-05 34.9 -3.5 25 55-79 118-142 (144)
8 1jke_A O145, D-Tyr-trnaTyr dea 37.1 1.7 5.9E-05 35.0 -3.6 25 55-79 119-143 (145)
9 2dbo_A D-tyrosyl-tRNA(Tyr) dea 35.3 1.7 6E-05 35.1 -3.9 28 55-82 119-146 (148)
10 1tc5_A Probable eukaryotic D-a 34.9 3.5 0.00012 34.7 -2.2 25 55-79 168-192 (194)
11 3ko5_A D-tyrosyl-tRNA(Tyr) dea 32.6 2.2 7.4E-05 35.0 -3.8 27 55-81 131-157 (164)
12 2okv_A Probable D-tyrosyl-tRNA 24.9 3.4 0.00012 35.1 -4.0 28 56-83 122-149 (209)
13 2pfu_A Biopolymer transport EX 23.6 38 0.0013 23.3 1.9 26 140-165 19-44 (99)
14 4gc0_A D-xylose-proton symport 20.5 51 0.0017 27.4 2.3 27 19-45 444-470 (491)
No 1
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=100.00 E-value=2.9e-37 Score=238.64 Aligned_cols=111 Identities=30% Similarity=0.426 Sum_probs=103.1
Q ss_pred HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCccceeecccCcEEE
Q 039722 65 MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLY 144 (196)
Q Consensus 65 Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~~~~~Tv~G~~L~ 144 (196)
|.++|.++||||||||||+||+++|++++++|+++++ ++.|.++|.||||||+++++|+..+. .+.|++|++|+
T Consensus 27 l~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~----~~~l~~lL~yHvv~~~~~~~~l~~~~--~~~tl~G~~l~ 100 (137)
T 1w7d_A 27 LVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPEN----KEKLTEILTYHVVPGEVMSSDLTEGM--TAETVEGGALT 100 (137)
T ss_dssp THHHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHH----HHHHHHHHHHHEEESCCCTTTSCSSE--EEECTTSCEEE
T ss_pred CHHHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCC----HHHHHHHHHhhEeCcEEcHHHhcCCC--eeeccCCceEE
Confidence 7888999999999999999999999999999988654 67899999999999999999998875 58999999999
Q ss_pred EEEeCCCcEEEcceeeeeeccccCCcEEEEecccccChh
Q 039722 145 ISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDAE 183 (196)
Q Consensus 145 V~~~~~G~v~Vn~a~V~~aDI~asNGVIHVID~VlmP~e 183 (196)
|+.. +| ++|||++|+++||.++|||||+||+||+|+.
T Consensus 101 v~~~-~g-v~vn~a~v~~~di~~~NGvIHvID~VL~P~s 137 (137)
T 1w7d_A 101 VTLE-GG-PKVNGVSISQPDVDASNGVIHVIDGVLMPGA 137 (137)
T ss_dssp EECT-TS-CEETTEECSBCCCBCSSSEEEBCSSCCSSCC
T ss_pred EEec-CC-EEEeCcEEEECCeecCCeEEEEECeeeCCCC
Confidence 9985 67 9999999999999999999999999999973
No 2
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=100.00 E-value=2.8e-35 Score=226.27 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=103.3
Q ss_pred hhcCchhHH--------HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeecccc
Q 039722 56 EEIGKFAEM--------MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMV 127 (196)
Q Consensus 56 ~~~G~F~tl--------Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv 127 (196)
.+.+.|+++ |.++|.++||||||||||+||+++|+++++.|++ + ++.|.++|.|||+||.+.++++
T Consensus 9 ~~~~~fs~~~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~--~----~~~l~~iL~yHvv~~~~~~~~l 82 (132)
T 2vxp_A 9 KGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLG--D----AKELANILKYHIGDEILVSGGI 82 (132)
T ss_dssp TTSTTCHHHHHHHHHHTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHT--C----HHHHHHHHHHSBBSSCCCSTTC
T ss_pred HcCCCHHHHHHHHHHcCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhc--C----HHHHHHHHHhcCcCceeehhhc
Confidence 445666666 7788999999999999999999999999998874 2 6799999999999999999999
Q ss_pred CCCccceeecccCcEEEEEEeCCCcEEEcceeeeeeccccCCcEEEEeccccc
Q 039722 128 PFGEEISYDSLSGLTLYISKSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIM 180 (196)
Q Consensus 128 ~~g~~~~~~Tv~G~~L~V~~~~~G~v~Vn~a~V~~aDI~asNGVIHVID~Vlm 180 (196)
..+. .+.|++|++|+|+.+ +|.++|||++|+++||.++|||||+||+|||
T Consensus 83 ~~~~--~~~tl~G~~l~v~~~-~~~v~vn~a~v~~~di~a~NGvIHvID~VLl 132 (132)
T 2vxp_A 83 GALV--RLKSLQGDKLEVSLK-NNVVSVNKEPVAEPDIMATNGVVHVITNVLQ 132 (132)
T ss_dssp SSCE--EEEBTTSSEEEEEEE-TTEEEESSCBEEEEEEEETTEEEEEESSCC-
T ss_pred cCCc--eEecCCCCEEEEEEe-CCEEEEeccEEEEcceecCCEEEEEECcEeC
Confidence 7654 689999999999986 7889999999999999999999999999996
No 3
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.97 E-value=5.3e-33 Score=222.15 Aligned_cols=104 Identities=20% Similarity=0.353 Sum_probs=96.1
Q ss_pred HhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCccceeecccCcEEEEE
Q 039722 67 EMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEEISYDSLSGLTLYIS 146 (196)
Q Consensus 67 d~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~~~~~Tv~G~~L~V~ 146 (196)
++|.+.| ||||||||+||++++++++++|++ | ++.|.+||.||||||+++++|+. | .+.|++|++|+|+
T Consensus 59 ~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~--~----~~~L~~iL~yHvv~g~~~~~~l~-g---~~~Tl~G~~l~v~ 127 (163)
T 1nyo_A 59 DTLNSGQ-YTVFAPTNAAFSKLPASTIDELKT--N----SSLLTSILTYHVVAGQTSPANVV-G---TRQTLQGASVTVT 127 (163)
T ss_dssp HHHTSSS-EEECCBCHHHHHHSCHHHHHHHTT--C----SSHHHHHHHHTEEESCCCTTTSC-E---EEECTTSSEEEEE
T ss_pred HHhCCCC-cEEEEECHHHHHhccHHHHHHHhc--C----HHHHHHHHHhceECCEEcHHHhC-C---ccccCCCCEEEEE
Confidence 6788999 999999999999999999999875 3 34799999999999999999997 4 5899999999999
Q ss_pred EeCCCcEEEcceeeeeeccccCCcEEEEecccccCh
Q 039722 147 KSSDGKLLVNRVESERLDLKKGKIVIHIMDGVIMDA 182 (196)
Q Consensus 147 ~~~~G~v~Vn~a~V~~aDI~asNGVIHVID~VlmP~ 182 (196)
.. +|.++||+++|+++||.++|||||+||+||+|+
T Consensus 128 ~~-~~~v~vn~a~V~~~di~a~NGvIHvID~VL~P~ 162 (163)
T 1nyo_A 128 GQ-GNSLKVGNADVVCGGVSTANATVYMIDSVLMPP 162 (163)
T ss_dssp EC-SSCEEETTEECSSBCCCCSSEEEBCBSSCCCCC
T ss_pred EE-CCEEEEeccEEEECceEcCCEEEEEECcEeCCC
Confidence 86 688999999999999999999999999999997
No 4
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.94 E-value=1.9e-27 Score=204.14 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=98.0
Q ss_pred hcCchhHH--------HHHhcC-CCCceEEEeCChHHHHHhh----hhhhhhcccCCCCCchHHHHHHhhhcccccc--e
Q 039722 57 EIGKFAEM--------MIEMLP-EDLAFTIFVPSVKAFDREL----KLQVNDSLVGDNVNNTYAILSRILGFSAVPR--T 121 (196)
Q Consensus 57 ~~G~F~tl--------Lvd~L~-g~GPFTVFAPTdeAFaklp----~gtve~LLk~enkd~tka~Ls~ILtYHVVPg--k 121 (196)
+.+.|+++ |.++|. +++|||||||||+||++++ +++.+.+ .+++ .+.|.++|.||+||| .
T Consensus 167 ~~~~fs~~~~~l~~~gl~~~L~~~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l-~~~~----~~~l~~iL~yHvv~~~~~ 241 (324)
T 1o70_A 167 SDPMMSDTYKMGKFSHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLF-MADF----SYHSKSILERHLAISDKE 241 (324)
T ss_dssp HCGGGHHHHHHTTTTTTTGGGGCSSSEEEEEEECHHHHHHHHHHCHHHHHHHT-SGGG----HHHHHHHHHTTEEEESSC
T ss_pred cCchHHHHHHHHHhhCHHHHhCCCCCCeEEEEeChHHHHhhhhhchhHHHHHh-ccCc----HHHHHHHHHhcEeCCcce
Confidence 34556655 667887 5899999999999999995 4455544 3332 458999999999999 8
Q ss_pred eeccccCCCc----cceeecccCcEEEEEEe-CCCcEEEc----ceeeeeeccccCCcEEEEecccccChhhhh
Q 039722 122 LSSIMVPFGE----EISYDSLSGLTLYISKS-SDGKLLVN----RVESERLDLKKGKIVIHIMDGVIMDAEFEQ 186 (196)
Q Consensus 122 v~aadv~~g~----~~~~~Tv~G~~L~V~~~-~~G~v~Vn----~a~V~~aDI~asNGVIHVID~VlmP~ef~~ 186 (196)
++++++..+. ...+.|++ .++.++.. .+|.+.|| +++|+++||.++|||||+||+||+|++..+
T Consensus 242 ~~~~~l~~~~~~~~~~~~~Tl~-~~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NGvIHvID~VL~P~~~~~ 314 (324)
T 1o70_A 242 YTMKDLVKFSQESGSVILPTFR-DSLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNGIIHVIDYPLLEEKDVV 314 (324)
T ss_dssp CCHHHHHHHHHHSSSEEEECSS-SEEEEEEEEETTEEEEEETTEEEEEEEEEEEETTEEEEEESSCSCCTTTTC
T ss_pred EcHHHHhhhccCCCeeeeeccC-CcEEEEEEecCCEEEEEecCceeEEEEcccccCCCeEEEeceeecCCcccc
Confidence 8878886432 12478999 78988763 36789998 899999999999999999999999998643
No 5
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.93 E-value=3.2e-27 Score=202.69 Aligned_cols=110 Identities=18% Similarity=0.256 Sum_probs=92.3
Q ss_pred HHHhcCCCCceEEEeCChHHHHHhhhhhhhhcccCCCCCchHHHHHHhhhcccccceeeccccCCCcc---ceeecccCc
Q 039722 65 MIEMLPEDLAFTIFVPSVKAFDRELKLQVNDSLVGDNVNNTYAILSRILGFSAVPRTLSSIMVPFGEE---ISYDSLSGL 141 (196)
Q Consensus 65 Lvd~L~g~GPFTVFAPTdeAFaklp~gtve~LLk~enkd~tka~Ls~ILtYHVVPgkv~aadv~~g~~---~~~~Tv~G~ 141 (196)
|.++|.+.||||||||||+||+++ ++++|++ + ++.|.+||.||||||+++++++..+.. ..+.|++|.
T Consensus 38 l~~~L~~~~~~TvFAPtn~Af~~~---~~~~l~~--~----~~~l~~iL~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~ 108 (324)
T 1o70_A 38 VLDDINSLTEVTILAPSNEAWNSS---NINNVLR--D----RNKMRQILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNN 108 (324)
T ss_dssp HHHHHHTCSSEEEEEECHHHHHHT---CTHHHHT--C----HHHHHHHHHHTEESSCCCHHHHHHHTSSSCCCEEBSSTT
T ss_pred HHHHHcCCCCeEEEEEChHhhhcc---cHhhhhC--C----HHHHHHHHHhcEeCCeecHHHHhhccCCCceEEEcCCCC
Confidence 678899999999999999999764 7777763 2 678999999999999999999865421 157999998
Q ss_pred E-EEEEEeC---CCcEEEcc----eeeeeeccccCCcEEEEecccccChh
Q 039722 142 T-LYISKSS---DGKLLVNR----VESERLDLKKGKIVIHIMDGVIMDAE 183 (196)
Q Consensus 142 ~-L~V~~~~---~G~v~Vn~----a~V~~aDI~asNGVIHVID~VlmP~e 183 (196)
+ +++.... ++.+.+|| ++|+++||.++|||||+||+||+||.
T Consensus 109 ~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~NGvIhvID~VL~pp~ 158 (324)
T 1o70_A 109 TFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHVLGVPY 158 (324)
T ss_dssp CEEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSEEEEEESSCTTSCC
T ss_pred ceEEEEEeecCCceEEEEcCCceeEEEEeccccccCcEEEEEchhhhhch
Confidence 7 6776642 34688985 89999999999999999999999975
No 6
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Probab=46.68 E-value=31 Score=25.88 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=31.9
Q ss_pred cccCcEEEEEEeCC-CcEEEcceeeeeec-------------------------cccCCcEEEE--ecccccChh
Q 039722 137 SLSGLTLYISKSSD-GKLLVNRVESERLD-------------------------LKKGKIVIHI--MDGVIMDAE 183 (196)
Q Consensus 137 Tv~G~~L~V~~~~~-G~v~Vn~a~V~~aD-------------------------I~asNGVIHV--ID~VlmP~e 183 (196)
+++|+.-.|-.+.+ =.|+|||.++..+- -...+||||. +|++.+|+.
T Consensus 18 ~~~G~~~RIvLeK~tmdVwvNG~~iet~geFvd~GTet~F~lg~~~c~I~a~sSG~k~~GIiH~L~Vng~~vp~~ 92 (94)
T 2kd2_A 18 RLDGEDLRVVLEKDTMDVWCNGQKMETAGEFVDDGTETHFSVGNHDCYIKAVSSGKRKEGIIHTLIVDNREIPEL 92 (94)
T ss_dssp EETTEEEEEEEETTTTEEEESSSBCCCCCEECSSSEEEEEEETTEEEEEEEEEESSSSSEEEEEEEESSCBCCBS
T ss_pred EeCCCEEEEEEecCcEEEEECCEEeEEeeEEecCCcEEEEEeCCceEEEEEEecCCCcccEEEEEEECCeECccc
Confidence 56777666655544 56888888754332 3556799994 788888754
No 7
>1j7g_A D-tyrosyl-tRNA(Tyr) deacylase; D-Tyr-tRNA(Tyr) deacylase, structural genomics, hypothetical structure 2 function project, S2F; 1.64A {Haemophilus influenzae rd KW20} SCOP: c.110.1.1
Probab=38.18 E-value=1.7 Score=34.94 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.0
Q ss_pred hhhcCchhHHHHHhcCCCCceEEEe
Q 039722 55 REEIGKFAEMMIEMLPEDLAFTIFV 79 (196)
Q Consensus 55 a~~~G~F~tlLvd~L~g~GPFTVFA 79 (196)
..+.|.||.+|.=.|-.|||+|+..
T Consensus 118 ~V~tG~FGA~M~V~l~NDGPVTi~l 142 (144)
T 1j7g_A 118 PVSTGQFAADMQVSLTNDGPVTFWL 142 (144)
T ss_dssp CEEECCTTSCCEEEEEEEEEEEEEE
T ss_pred CeeeCccCCCeEEEEEECCCEEEEE
Confidence 3678999999999999999999864
No 8
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel, hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Probab=37.12 E-value=1.7 Score=34.96 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.1
Q ss_pred hhhcCchhHHHHHhcCCCCceEEEe
Q 039722 55 REEIGKFAEMMIEMLPEDLAFTIFV 79 (196)
Q Consensus 55 a~~~G~F~tlLvd~L~g~GPFTVFA 79 (196)
..+.|.||.+|.=.|-.|||+|+..
T Consensus 119 ~V~tG~FGA~M~V~l~NDGPVTi~l 143 (145)
T 1jke_A 119 NTQTGRFAADMQVSLVNDGPVTFWL 143 (145)
T ss_dssp CEEECCTTSCEEEEEEEEEEEEEEE
T ss_pred cceeCccCCCcEEEEEeCCCEEEEE
Confidence 4778999999999999999999864
No 9
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine, structural genomi NPPSFA, national project on protein structural and function analyses; 2.76A {Aquifex aeolicus}
Probab=35.33 E-value=1.7 Score=35.05 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=24.0
Q ss_pred hhhcCchhHHHHHhcCCCCceEEEeCCh
Q 039722 55 REEIGKFAEMMIEMLPEDLAFTIFVPSV 82 (196)
Q Consensus 55 a~~~G~F~tlLvd~L~g~GPFTVFAPTd 82 (196)
..+.|.||.+|.=-|-.|||+|+..-|.
T Consensus 119 ~V~tG~FGA~M~V~l~NDGPVTi~lds~ 146 (148)
T 2dbo_A 119 KVETGIFGAMMDVFIENWGPVTIIIDSR 146 (148)
T ss_dssp CEEECCSSSCCEEEEEEEEEEEEEEEGG
T ss_pred cceECccCCCcEEEEEECCCEEEEEECC
Confidence 4678999999999999999999986553
No 10
>1tc5_A Probable eukaryotic D-amino acid tRNA deacylase, LMAJ005534AAA; SGPP, structural genomics, PSI; 1.93A {Leishmania major} SCOP: c.110.1.1
Probab=34.86 E-value=3.5 Score=34.72 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=22.4
Q ss_pred hhhcCchhHHHHHhcCCCCceEEEe
Q 039722 55 REEIGKFAEMMIEMLPEDLAFTIFV 79 (196)
Q Consensus 55 a~~~G~F~tlLvd~L~g~GPFTVFA 79 (196)
.++.|.||.+|.=-|..|||||+..
T Consensus 168 ~V~tG~FGa~M~V~l~NDGPvTi~l 192 (194)
T 1tc5_A 168 RVISGTFGNRQGLRFESEGPFTHMF 192 (194)
T ss_dssp CEEECCTTSCCCEEEEESCCCCEEE
T ss_pred ceeECcccCCeEEEEEeCCCEEEEE
Confidence 4789999999999999999999863
No 11
>3ko5_A D-tyrosyl-tRNA(Tyr) deacylase; DTD, ADP, hydrolase; HET: ADP; 2.09A {Plasmodium falciparum} PDB: 3knp_A 3knf_A* 3ko3_A* 3ko4_A* 3ko7_A* 3ko9_A* 3kob_A* 3koc_A* 3kod_A 3lmt_A 3lmu_A 3lmv_A*
Probab=32.59 E-value=2.2 Score=34.97 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=23.5
Q ss_pred hhhcCchhHHHHHhcCCCCceEEEeCC
Q 039722 55 REEIGKFAEMMIEMLPEDLAFTIFVPS 81 (196)
Q Consensus 55 a~~~G~F~tlLvd~L~g~GPFTVFAPT 81 (196)
.++.|.||.+|.=.|-.|||+|+..-|
T Consensus 131 ~V~tG~FGA~M~V~l~NDGPVTi~lds 157 (164)
T 3ko5_A 131 KIKIGKFGNYMNIDVTNDGPVTIYIDT 157 (164)
T ss_dssp SEEECCTTSCEEEEEEEEEEEEEEEEG
T ss_pred ceEecccCCceEEEEEECCCEEEEEec
Confidence 467899999999999999999998654
No 12
>2okv_A Probable D-tyrosyl-tRNA(Tyr) deacylase 1; DNA replication, DUE, ATPase, tRNA deacylase, hydrolase; 2.00A {Homo sapiens}
Probab=24.95 E-value=3.4 Score=35.10 Aligned_cols=28 Identities=29% Similarity=0.229 Sum_probs=25.2
Q ss_pred hhcCchhHHHHHhcCCCCceEEEeCChH
Q 039722 56 EEIGKFAEMMIEMLPEDLAFTIFVPSVK 83 (196)
Q Consensus 56 ~~~G~F~tlLvd~L~g~GPFTVFAPTde 83 (196)
++.|.||.+|.=-|-.|||+|+..=|.+
T Consensus 122 V~tG~FGA~M~V~LvNDGPVTi~lds~~ 149 (209)
T 2okv_A 122 IKDGKFGAYMQVHIQNDGPVTIELESPA 149 (209)
T ss_dssp EEECCTTSCEEEEEEEEEEEEEEEECCC
T ss_pred cEeCcccCCcEEEEEeCCCEEEEEECCC
Confidence 6779999999999999999999988764
No 13
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=23.59 E-value=38 Score=23.28 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=19.1
Q ss_pred CcEEEEEEeCCCcEEEcceeeeeecc
Q 039722 140 GLTLYISKSSDGKLLVNRVESERLDL 165 (196)
Q Consensus 140 G~~L~V~~~~~G~v~Vn~a~V~~aDI 165 (196)
..++.|+.+++|.+++||..+...++
T Consensus 19 ~~~i~i~I~~dg~i~~~~~~v~~~~L 44 (99)
T 2pfu_A 19 EKPVYLSVKADNSMFIGNDPVTDETM 44 (99)
T ss_dssp CCCCEEEEETTTEEEETTEEECSSSH
T ss_pred CCCEEEEEeCCCCEEECCEecCHHHH
Confidence 34677887788999999987654443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=20.50 E-value=51 Score=27.42 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=19.8
Q ss_pred hhhHhhhhhHHhhhhhhhccCCCccCC
Q 039722 19 VLVVVSVCCLSILIFSMLRLPDISLGS 45 (196)
Q Consensus 19 ~~~~~~v~~~~~~~~~~~~lp~~~~~~ 45 (196)
.+.+..++|+...++..+-+||+..++
T Consensus 444 ~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 444 SYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 344566777777788889999987654
Done!