BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039723
         (350 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3YSQ4|TIG_EHRCJ Trigger factor OS=Ehrlichia canis (strain Jake) GN=tig PE=3 SV=1
          Length = 440

 Score = 42.0 bits (97), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 12  LRCTVTEPAVKLSDVKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQK 71
           L    T+ +V +  +  ++D   + +VAR    K +  ++N ++ +         I QQ 
Sbjct: 241 LAGKTTDMSVVVKSIYVVKDVQDNESVARSYGFKDVAEMENFVRKQ---------IGQQF 291

Query: 72  DSLQIPIRPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVV 131
           D + + I   E      + +   +P  V  Q   K+  E+LD   D Q+  + ++ R+V 
Sbjct: 292 DQMVLTIMKKELFDYMDNTYSIDVPECVVKQEITKINKEILDSGEDIQIDVEKEAVRRVK 351

Query: 132 AGRLLKLLMISQMNKITLTMIDLLKW 157
            G L  L+ +S+ N IT+   D+L +
Sbjct: 352 LGML--LIRMSRHNNITIKNEDVLSF 375


>sp|P39447|ZO1_MOUSE Tight junction protein ZO-1 OS=Mus musculus GN=Tjp1 PE=1 SV=2
          Length = 1745

 Score = 33.9 bits (76), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 20  AVKLSDVKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKD 72
           A + S+  W RDR    + +RE++L P  + +++  S+P+K   +T++  +K+
Sbjct: 147 ANRRSEKSWARDR----SASRERSLSPRSDRRSVASSQPAKPTKVTLVKSRKN 195


>sp|Q18AP0|ADDB_CLOD6 ATP-dependent helicase/deoxyribonuclease subunit B OS=Clostridium
            difficile (strain 630) GN=addB PE=3 SV=1
          Length = 1155

 Score = 32.7 bits (73), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 8    PAEILRCTVTEPAVKLSDVKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITII 67
            PA IL C +  P  K ++ K   D  +  A+ +E  +K L+   + I  E  KSL   I 
Sbjct: 994  PAAILYCRINNPIAKFNEDK--DDEEIQEAILKELRMKGLVVKDSHIVKEMDKSL---ID 1048

Query: 68   TQQKDSLQIPI 78
             ++K+SL IP+
Sbjct: 1049 GERKNSLVIPV 1059


>sp|O97758|ZO1_CANFA Tight junction protein ZO-1 OS=Canis familiaris GN=TJP1 PE=1 SV=1
          Length = 1769

 Score = 32.7 bits (73), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 22  KLSDVKWIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKD 72
           + S+  W RDR    + +RE++L P  + +++  S+P K   +T++  +K+
Sbjct: 148 RRSEKSWARDR----SASRERSLSPRSDRRSVASSQPPKPTKVTLVKSRKN 194


>sp|Q32RW5|RPOB_STAPU DNA-directed RNA polymerase subunit beta OS=Staurastrum punctulatum
           GN=rpoB PE=3 SV=1
          Length = 1068

 Score = 31.6 bits (70), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 17/21 (80%)

Query: 313 LLNHPGIFYVSNKSGMYTVVL 333
           +L +PGI+YV N++GMYT  +
Sbjct: 122 ILRNPGIYYVLNRNGMYTATI 142


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,072,023
Number of Sequences: 539616
Number of extensions: 5659253
Number of successful extensions: 12044
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 12042
Number of HSP's gapped (non-prelim): 9
length of query: 350
length of database: 191,569,459
effective HSP length: 118
effective length of query: 232
effective length of database: 127,894,771
effective search space: 29671586872
effective search space used: 29671586872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)