Query 039723
Match_columns 350
No_of_seqs 134 out of 189
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 12:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11955 PORR: Plant organelle 100.0 5E-113 1E-117 836.9 27.7 310 28-349 1-317 (335)
2 PF11955 PORR: Plant organelle 99.4 2.3E-12 5E-17 127.3 12.5 135 128-324 16-152 (335)
3 PLN03196 MOC1-like protein; Pr 40.1 28 0.00061 36.6 3.5 170 72-327 132-303 (487)
4 PRK06264 cbiC precorrin-8X met 28.0 89 0.0019 29.6 4.3 58 224-290 152-209 (210)
5 PRK02260 S-ribosylhomocysteina 27.8 1.5E+02 0.0034 26.9 5.7 95 149-285 53-150 (158)
6 PF04530 Viral_Beta_CD: Viral 18.4 97 0.0021 27.1 2.3 25 229-254 92-116 (122)
7 PF14403 CP_ATPgrasp_2: Circul 16.0 1.7E+02 0.0036 30.9 3.8 59 273-335 59-117 (445)
8 PF12872 OST-HTH: OST-HTH/LOTU 14.5 1.5E+02 0.0033 22.0 2.4 46 48-93 8-63 (74)
9 PF06862 DUF1253: Protein of u 14.0 3.1E+02 0.0067 28.8 5.2 53 126-179 45-114 (442)
10 PF03819 MazG: MazG nucleotide 13.8 82 0.0018 24.1 0.7 13 79-91 62-74 (74)
No 1
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=100.00 E-value=5.2e-113 Score=836.93 Aligned_cols=310 Identities=44% Similarity=0.750 Sum_probs=297.9
Q ss_pred cccCcchhHHHHhhcCchhHHhHHHHHhcCCCCcccchhHHhccccCCCC-CchhhHHhhCCcceEeccCCCCCcCCccc
Q 039723 28 WIRDRGLDHAVAREKNLKPLLNIKNLIKSEPSKSLPITIITQQKDSLQIP-IRPMEFIRRYPSVFQEFLPGNVGVQPHIK 106 (350)
Q Consensus 28 ~vrd~~lD~~v~r~k~lr~v~~lk~li~s~P~~~lpl~~l~k~~~~L~l~-~~~~~FlrkyP~iF~~f~~~~~~~~p~~~ 106 (350)
|+||++||++|+++|+++++++|+++|+++|++++|++++++++++||++ +++++||+|||+||++|.++. ...|||+
T Consensus 1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~-~~~~~~~ 79 (335)
T PF11955_consen 1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPS-RSVPWFR 79 (335)
T ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCC-CCCceEE
Confidence 99999999999999999999999999999999999999999999999996 789999999999999998754 3689999
Q ss_pred CCHHHhhcHHHHHHHHHhccchHHHHHHHHHHHhccCCCccchHHHHHhHHhcCCChhhhcccCCCCCCCeEEeccCCCc
Q 039723 107 LTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKH 186 (350)
Q Consensus 107 LT~~a~~L~~eE~~~~~~~~~~~~~v~rL~KLLMmS~~~rLpL~kl~~lr~dLGLP~Df~~~lv~~yP~~Fr~v~~~~~~ 186 (350)
|||+|++|++||++++++ +++++|++|+||||||.+++|||++|++++||||||+||+++++++|||+|++|+..
T Consensus 80 LT~~a~~L~~eE~~~~~~--~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~--- 154 (335)
T PF11955_consen 80 LTPEAEDLLREERRVREE--MEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLE--- 154 (335)
T ss_pred eCHHHHHHHHHHHHHHHh--ChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecC---
Confidence 999999999999999987 789999999999999999999999999999999999999999999999999999953
Q ss_pred cccCCCCCcceEEEeecCCCccccHHHHHHHhc------CCCCccccccccCCCCccccHHHHHHHHhhhcCCCCCCCCC
Q 039723 187 ERCSGFDLFGELELVCWSNDFAVSVVEKKAKAK------GIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYEN 260 (350)
Q Consensus 187 ~~~~g~d~~~~LeLv~Wd~~LAvs~~E~~~~~~------~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~~Q~lPyiSPYed 260 (350)
++..+||||+|||+||||++|++++.+ +..+++++|||+||+||++++++++|+++||++||+|||+|
T Consensus 155 ------~~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed 228 (335)
T PF11955_consen 155 ------DGGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYED 228 (335)
T ss_pred ------CCCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCC
Confidence 234699999999999999999999964 25668999999999999999999999999999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHHHHhhccccchhhhhhHHhhhhccCCcHHHHHHHhhCCCcEEEEeeCCeeEEEEecccCCC
Q 039723 261 ATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKEAYKRG 340 (350)
Q Consensus 261 ~~~l~~~S~e~EKRaVavlHELLsLTveKr~~~~~L~~fr~efgLp~k~~~~l~rHPgiFYvS~kg~~~TVfLrEAY~~~ 340 (350)
+++++++|+++|||||||+|||||||||||+++++|+|||+|||||++++++|+|||||||||+||+|+||||||||++|
T Consensus 229 ~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~ 308 (335)
T PF11955_consen 229 ASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGG 308 (335)
T ss_pred ccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCC
Q 039723 341 SLIESDPLM 349 (350)
Q Consensus 341 ~Liek~Pl~ 349 (350)
+|||||||+
T Consensus 309 ~Liek~Pl~ 317 (335)
T PF11955_consen 309 ELIEKHPLV 317 (335)
T ss_pred CCCCCCchH
Confidence 999999997
No 2
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=99.40 E-value=2.3e-12 Score=127.29 Aligned_cols=135 Identities=17% Similarity=0.262 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHhccCCCccchHHHHHhHHhcCCC-hhhhcccCCCCCCCeEEeccCCCccccCCCCCcceEEEeecCCC
Q 039723 128 RQVVAGRLLKLLMISQMNKITLTMIDLLKWDLGLP-DDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSND 206 (350)
Q Consensus 128 ~~~~v~rL~KLLMmS~~~rLpL~kl~~lr~dLGLP-~Df~~~lv~~yP~~Fr~v~~~~~~~~~~g~d~~~~LeLv~Wd~~ 206 (350)
....|.+|+.+|.-++++.||++.+..++.+|||+ ... .+++.+||..|.+...+. .+.++++|+.
T Consensus 16 ~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~-~~flrkyP~iF~~~~~~~--------~~~~~~~LT~---- 82 (335)
T PF11955_consen 16 RLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKV-SRFLRKYPSIFEVFQHPS--------RSVPWFRLTP---- 82 (335)
T ss_pred hHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccH-HHHHHhCCceEEEeccCC--------CCCceEEeCH----
Confidence 35678999999999999999999999999999995 444 479999999999987521 3356899876
Q ss_pred ccccHHHHHHHhcCCCCccccccccCCCCccccHHHHHHHHhhhcCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHhhcc
Q 039723 207 FAVSVVEKKAKAKGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLF 286 (350)
Q Consensus 207 LAvs~~E~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~~Q~lPyiSPYed~~~l~~~S~e~EKRaVavlHELLsLT 286 (350)
-| .+.. .++...++ +.|-.+|..|+.||||+
T Consensus 83 ~a---~~L~------------------------~eE~~~~~----------------------~~e~~~v~rL~KLLMMS 113 (335)
T PF11955_consen 83 EA---EDLL------------------------REERRVRE----------------------EMEPDLVERLRKLLMMS 113 (335)
T ss_pred HH---HHHH------------------------HHHHHHHH----------------------hChHHHHHHHHHHhccC
Confidence 22 1222 22223333 67899999999999999
Q ss_pred ccchhhhhhHHhhhhccCCcHHHHHHHh-hCCCcEEEEe
Q 039723 287 GAQKVEREKLLCFGNYLGIRSWFKRALL-NHPGIFYVSN 324 (350)
Q Consensus 287 veKr~~~~~L~~fr~efgLp~k~~~~l~-rHPgiFYvS~ 324 (350)
.++++.+++|.|++++||||.+|...++ +||+.|-|..
T Consensus 114 ~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~ 152 (335)
T PF11955_consen 114 KDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD 152 (335)
T ss_pred CCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence 9999999999999999999999999977 9999999988
No 3
>PLN03196 MOC1-like protein; Provisional
Probab=40.15 E-value=28 Score=36.59 Aligned_cols=170 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred ccCCCC-CchhhHHhhCCcceEeccCCCCCcCCcccCCHHHhhcHHHHHHHHHhccchHHHHHHHHHHHhccCCCccchH
Q 039723 72 DSLQIP-IRPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLT 150 (350)
Q Consensus 72 ~~L~l~-~~~~~FlrkyP~iF~~f~~~~~~~~p~~~LT~~a~~L~~eE~~~~~~~~~~~~~v~rL~KLLMmS~~~rLpL~ 150 (350)
..+|++ ..+...|.+||.|. .+.+..+..-...-=+.+--+.+.-..++.+--.||-++.++.|- .
T Consensus 132 ~~lG~s~~~i~~lI~~~P~lL------------~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~-p 198 (487)
T PLN03196 132 EKLGVTRSSLPELLRRYPQVL------------HASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMS-T 198 (487)
T ss_pred HHcCCCHHHHHHHHHhCCcee------------cccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHH-H
Q ss_pred HHHHhHHhcCCChhhhcccCCCCCCCeEEeccCCCccccCCCCCcceEEEeecCCCccccHHHHHHHhcCCCCccccccc
Q 039723 151 MIDLLKWDLGLPDDFLTSLVPDFPDYFRAVGYQNKHERCSGFDLFGELELVCWSNDFAVSVVEKKAKAKGIDGENIMFSM 230 (350)
Q Consensus 151 kl~~lr~dLGLP~Df~~~lv~~yP~~Fr~v~~~~~~~~~~g~d~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~Fp~ 230 (350)
+++.++. +|++.+=..+++.+||+.+...-.
T Consensus 199 ~v~fL~~-lGvs~~~i~~il~~~P~iL~~sve------------------------------------------------ 229 (487)
T PLN03196 199 SVAYLVS-IGVAPRDIGPMLTRFPEILGMRVG------------------------------------------------ 229 (487)
T ss_pred HHHHHHH-cCCCHHHHHHHHHhCcHHhhcChh------------------------------------------------
Q ss_pred cCCCCccccHHHHHHHHhhhcCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHhhccccchhhhhhHHhhhhccCCcHHHH
Q 039723 231 NFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFK 310 (350)
Q Consensus 231 ~fp~G~~l~k~~~~~l~~~Q~lPyiSPYed~~~l~~~S~e~EKRaVavlHELLsLTveKr~~~~~L~~fr~efgLp~k~~ 310 (350)
+..+-.++ |-...++ +.+.=.+++.---.+|+..+|+++ ..++..++ ++|++.+-.
T Consensus 230 ---------~~i~P~v~----------fL~~lGv---~~~~I~~il~~~P~iL~~sle~~l-kp~v~~L~-elGv~~~~i 285 (487)
T PLN03196 230 ---------NNIKPKVD----------YLESLGL---PRLAVARILEKRPYILGFDLEETV-KPNVECLL-EFGVRKEAL 285 (487)
T ss_pred ---------hhHHHHHH----------HHHHcCC---CHHHHHHHHHhCCceeEcCHHHhH-HHHHHHHH-HcCCCHHHH
Q ss_pred HHHh-hCCCcEEEEeeCC
Q 039723 311 RALL-NHPGIFYVSNKSG 327 (350)
Q Consensus 311 ~~l~-rHPgiFYvS~kg~ 327 (350)
..++ +||.++..|.+.+
T Consensus 286 ~~lI~~~P~iL~~s~e~k 303 (487)
T PLN03196 286 PSVIAQYPDILGLDLKAK 303 (487)
T ss_pred HHHHHhCCceeEecHHHh
No 4
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=27.98 E-value=89 Score=29.62 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=42.5
Q ss_pred ccccccccCCCCccccHHHHHHHHhhhcCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHhhccccch
Q 039723 224 ENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISLFGAQK 290 (350)
Q Consensus 224 ~~~~Fp~~fp~G~~l~k~~~~~l~~~Q~lPyiSPYed~~~l~~~S~e~EKRaVavlHELLsLTveKr 290 (350)
...++=+-.|-||---.+-|++|.+ +..||+ -..+-..||. -+++++|.|+.+..+++
T Consensus 152 ~~PalVIg~PVGFV~A~ESKe~L~~-~~vP~I----t~~GrkGGS~----vAaAivNALl~~~~~~~ 209 (210)
T PRK06264 152 IKPKLVVGVPVGFVKAAESKEALRN-TNIPSI----STIGPKGGTP----VAVSIINGIIALSKNER 209 (210)
T ss_pred CCCcEEEEeCCccccHHHHHHHHHh-CCCCEE----EEecCCCcHH----HHHHHHHHHHHHhccCC
Confidence 3567778889999888888999965 345544 4444455555 47999999999988765
No 5
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=27.76 E-value=1.5e+02 Score=26.89 Aligned_cols=95 Identities=14% Similarity=0.202 Sum_probs=62.1
Q ss_pred hHHHHHhHHhcCCChhhhcccCCCCCCC-eEEeccCCCcccc-CCCCCcceEEEee-cCCCccccHHHHHHHhcCCCCcc
Q 039723 149 LTMIDLLKWDLGLPDDFLTSLVPDFPDY-FRAVGYQNKHERC-SGFDLFGELELVC-WSNDFAVSVVEKKAKAKGIDGEN 225 (350)
Q Consensus 149 L~kl~~lr~dLGLP~Df~~~lv~~yP~~-Fr~v~~~~~~~~~-~g~d~~~~LeLv~-Wd~~LAvs~~E~~~~~~~~~~~~ 225 (350)
++.|.|+- .+++++|.+. .+|++.. .-+| +| =+|-+.. ++++-.+.+++..
T Consensus 53 lHTlEHL~----------At~lRn~~~~~~~iI~~s--PMGCrTG----FYli~~g~~~~~~i~~l~~~~---------- 106 (158)
T PRK02260 53 IHTLEHLL----------AGFLRNHLDGGVEIIDIS--PMGCRTG----FYLILIGTPDEEDVADALKAT---------- 106 (158)
T ss_pred hhHHHHHH----------HHHHhhCccCCceEEEEC--CCccccc----cEEEEeCCCCHHHHHHHHHHH----------
Confidence 67777775 4677788777 7777752 2357 44 3555544 5665555444433
Q ss_pred ccccccCCCCccccHHHHHHHHhhhcCCCCCCCCCcCCCCCCChhhHHHHHHHHHHHhhc
Q 039723 226 IMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENATHLLPKSDESDKWAVAIMHEVISL 285 (350)
Q Consensus 226 ~~Fp~~fp~G~~l~k~~~~~l~~~Q~lPyiSPYed~~~l~~~S~e~EKRaVavlHELLsL 285 (350)
.+..+..+.+.|-.+|++=+...+-+-+.|-..|-.++.+.++-
T Consensus 107 ----------------l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 107 ----------------LEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred ----------------HHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 23334688899999999887777666667777777777666653
No 6
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=18.36 E-value=97 Score=27.07 Aligned_cols=25 Identities=24% Similarity=0.644 Sum_probs=19.0
Q ss_pred cccCCCCccccHHHHHHHHhhhcCCC
Q 039723 229 SMNFSSGFEIDKKMKKWMDNWQKLPY 254 (350)
Q Consensus 229 p~~fp~G~~l~k~~~~~l~~~Q~lPy 254 (350)
.|++-+ --++.++-+.+..||+.||
T Consensus 92 eik~~~-~PIDP~VIaAIHHwQk~Pf 116 (122)
T PF04530_consen 92 EIKLAP-VPIDPEVIAAIHHWQKYPF 116 (122)
T ss_pred EEecCC-CCCCHHHHHHHHHHHhCCC
Confidence 344444 4567888899999999998
No 7
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=15.95 E-value=1.7e+02 Score=30.86 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhccccchhhhhhHHhhhhccCCcHHHHHHHhhCCCcEEEEeeCCeeEEEEec
Q 039723 273 KWAVAIMHEVISLFGAQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVLKE 335 (350)
Q Consensus 273 KRaVavlHELLsLTveKr~~~~~L~~fr~efgLp~k~~~~l~rHPgiFYvS~kg~~~TVfLrE 335 (350)
++++..++.++.=.+...+. +- .||+-||+|....+++...||+=..+ --.|.=|||.+
T Consensus 59 ~~~~~~l~~i~~kv~~~~l~-d~--~lR~~fg~~~~~e~Li~~dpgy~~~l-p~aR~Dvf~~~ 117 (445)
T PF14403_consen 59 NRIAETLYSILLKVIRRYLR-DP--ELRKLFGFSPEEEELILIDPGYDSPL-PIARLDVFLTE 117 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CH--HHHHHhCcCHHHHHHhcCCCCCCCcC-cceeeeEEEcC
Confidence 47788888888655544444 43 89999999999999999999987666 55677777775
No 8
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=14.54 E-value=1.5e+02 Score=22.02 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=29.4
Q ss_pred HhHHHHHhcCCC--CcccchhHHhcccc----CCCC----CchhhHHhhCCcceEe
Q 039723 48 LNIKNLIKSEPS--KSLPITIITQQKDS----LQIP----IRPMEFIRRYPSVFQE 93 (350)
Q Consensus 48 ~~lk~li~s~P~--~~lpl~~l~k~~~~----L~l~----~~~~~FlrkyP~iF~~ 93 (350)
-.|+++|.+.++ +.++++.+...-.. +... .....||+..|.+|++
T Consensus 8 ~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~~~~~~~i 63 (74)
T PF12872_consen 8 KLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELLESLPDVVEI 63 (74)
T ss_dssp HHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT-TTTEEE
T ss_pred HHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCcHHHHHHhCCCeEEE
Confidence 346677755554 47998888754222 2221 2579999999999998
No 9
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=14.03 E-value=3.1e+02 Score=28.84 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHhccCCCccchHHHHHhHHhcC-----------------CChhhhcccCCCCCCCeEE
Q 039723 126 SYRQVVAGRLLKLLMISQMNKITLTMIDLLKWDLG-----------------LPDDFLTSLVPDFPDYFRA 179 (350)
Q Consensus 126 ~~~~~~v~rL~KLLMmS~~~rLpL~kl~~lr~dLG-----------------LP~Df~~~lv~~yP~~Fr~ 179 (350)
+.+..+..-+..|+.|+... .-+..-..+..++| -|+||...+-.+.-|.|++
T Consensus 45 P~R~~A~~~V~~Li~l~~~~-~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 45 PFRNSALRIVETLISLLPPG-KQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred ccHHHHHHHHHHHHHHcCcc-chHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
No 10
>PF03819 MazG: MazG nucleotide pyrophosphohydrolase domain; InterPro: IPR004518 This domain is found in a group of prokaryotic proteins which includes Escherichia coli MazG. The domain is about 100 amino acid residues in length and contains four conserved negatively charged residues that probably form an active site or metal binding site.; PDB: 1VMG_A 2YXH_B 2OIE_B 2OIG_C 2Q4P_A 2A3Q_B 2Q9L_C 2Q5Z_B 2Q73_A 3CRC_B ....
Probab=13.80 E-value=82 Score=24.14 Aligned_cols=13 Identities=46% Similarity=0.866 Sum_probs=11.0
Q ss_pred chhhHHhhCCcce
Q 039723 79 RPMEFIRRYPSVF 91 (350)
Q Consensus 79 ~~~~FlrkyP~iF 91 (350)
....+.+|||++|
T Consensus 62 ~~~K~~~R~p~~f 74 (74)
T PF03819_consen 62 KMEKLERRYPHVF 74 (74)
T ss_dssp HHHHHHHHSGGGG
T ss_pred HHHHHhccCCCCC
Confidence 3577999999998
Done!