Query 039723
Match_columns 350
No_of_seqs 134 out of 189
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 21:58:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039723.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039723hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 15.5 1.9E+02 0.014 20.7 7.2 71 46-120 30-104 (135)
2 d1tuwa_ d.58.4.8 (A:) Tetracen 14.2 42 0.003 25.5 2.2 40 197-261 48-87 (106)
3 d1sfka_ a.190.1.1 (A:) Flavivi 12.4 24 0.0017 25.2 0.3 19 286-304 47-65 (73)
4 d1nlna_ d.3.1.7 (A:) Human ade 9.2 1.9E+02 0.013 24.0 5.0 50 150-205 5-61 (203)
5 d1gpma1 c.26.2.1 (A:208-404) G 9.1 61 0.0044 24.3 1.7 23 292-317 173-195 (197)
6 d1u78a2 a.4.1.2 (A:55-104) Tra 8.9 50 0.0036 21.4 0.9 38 115-152 9-46 (50)
7 d1vyfa_ b.60.1.2 (A:) Fatty ac 8.5 1.4E+02 0.0099 22.6 3.7 46 288-333 10-55 (135)
8 d2gdwa1 a.28.1.2 (A:8-83) Pept 8.4 1.9E+02 0.014 19.2 4.1 47 270-317 7-65 (76)
9 d2a1va1 d.198.3.1 (A:4-134) Hy 8.3 88 0.0064 23.3 2.4 14 79-92 64-77 (131)
10 d1kqwa_ b.60.1.2 (A:) Cellular 7.4 1.7E+02 0.013 21.7 3.8 44 289-332 9-52 (134)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=15.49 E-value=1.9e+02 Score=20.67 Aligned_cols=71 Identities=11% Similarity=0.128 Sum_probs=45.2
Q ss_pred hHHhHHHHHhcCCCCcccchhHHhccccCCCCC----chhhHHhhCCcceEeccCCCCCcCCcccCCHHHhhcHHHHHH
Q 039723 46 PLLNIKNLIKSEPSKSLPITIITQQKDSLQIPI----RPMEFIRRYPSVFQEFLPGNVGVQPHIKLTPEVLDIDADEQL 120 (350)
Q Consensus 46 ~v~~lk~li~s~P~~~lpl~~l~k~~~~L~l~~----~~~~FlrkyP~iF~~f~~~~~~~~p~~~LT~~a~~L~~eE~~ 120 (350)
.-..+-.+|..+|+..++..+|++ .+|+.. ++..-|.+-=-|-..- ++..+-.-.+.||++|.++..+=..
T Consensus 30 ~q~~vL~~l~~~~~~~it~~ela~---~~~~~~~~vs~~l~~L~~~g~v~r~~-~~~D~R~~~i~lT~~G~~~~~~~~~ 104 (135)
T d3broa1 30 TQMTIIDYLSRNKNKEVLQRDLES---EFSIKSSTATVLLQRMEIKKLLYRKV-SGKDSRQKCLKLTKKANKLETIILS 104 (135)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEE-CSSCTTSEEEEECHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHH---HHCcCHhHHHHHHHHHHHHHHHHHHh-hhhhhhhhhhcccHHHHHHHHHHHH
Confidence 334566677788888888888877 456652 3444555555555443 2222334579999999998876433
No 2
>d1tuwa_ d.58.4.8 (A:) Tetracenomycin polyketide synthesis protein TcmI {Streptomyces glaucescens [TaxId: 1907]}
Probab=14.18 E-value=42 Score=25.50 Aligned_cols=40 Identities=15% Similarity=0.400 Sum_probs=23.4
Q ss_pred eEEEeecCCCccccHHHHHHHhcCCCCccccccccCCCCccccHHHHHHHHhhhcCCCCCCCCCc
Q 039723 197 ELELVCWSNDFAVSVVEKKAKAKGIDGENIMFSMNFSSGFEIDKKMKKWMDNWQKLPYISPYENA 261 (350)
Q Consensus 197 ~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~~Q~lPyiSPYed~ 261 (350)
|+-|+.+|.+.+ .++++. .+-..| .++-+.|. |||||| ++
T Consensus 48 Y~HL~e~d~d~~-~~i~~a-------r~~P~F-----------~~is~~L~-----~~i~pY-~~ 87 (106)
T d1tuwa_ 48 YMHLIEADDDIM-ERLYQA-------RSHPLF-----------QEVNERVG-----QYLTPY-AQ 87 (106)
T ss_dssp EEEEEEESSCCH-HHHHHT-------TSCGGG-----------HHHHHHHH-----TTEEES-ST
T ss_pred EEEEEeccCCch-HHHHHH-------hcCcHH-----------HHHHHHHH-----hhcCCC-Cc
Confidence 899999876532 223322 112233 45556666 999999 53
No 3
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=12.35 E-value=24 Score=25.22 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=17.1
Q ss_pred cccchhhhhhHHhhhhccC
Q 039723 286 FGAQKVEREKLLCFGNYLG 304 (350)
Q Consensus 286 TveKr~~~~~L~~fr~efg 304 (350)
+|+|...+.+|..|++|.|
T Consensus 47 ~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 47 SVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 6899999999999999976
No 4
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}
Probab=9.23 E-value=1.9e+02 Score=23.95 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=36.7
Q ss_pred HHHHHhHHhcCCChhhhcccCCCCCCCe-------EEeccCCCccccCCCCCcceEEEeecCC
Q 039723 150 TMIDLLKWDLGLPDDFLTSLVPDFPDYF-------RAVGYQNKHERCSGFDLFGELELVCWSN 205 (350)
Q Consensus 150 ~kl~~lr~dLGLP~Df~~~lv~~yP~~F-------r~v~~~~~~~~~~g~d~~~~LeLv~Wd~ 205 (350)
+.|.++-+|||+-.-|+-++-.++|.+- -||++.... +| |..+|.+ .|||
T Consensus 5 ~EL~~iv~~Lg~~~~FLGtFDkrFPGFl~~~k~~~AIVNT~~re---tG--G~HWlA~-Aw~P 61 (203)
T d1nlna_ 5 QELKAIVKDLGCGPYFLGTYDKRFPGFVSPHKLACAIVNTAGRE---TG--GVHWMAF-AWNP 61 (203)
T ss_dssp HHHHHHHHHTTCGGGEEEEECTTCCCCCCTTSCEEEEEESSCTT---TC--CCCEEEE-EEET
T ss_pred HHHHHHHHHcCCCCcccccccCCCCCccCCCccceeEEecCCcc---cC--ceeeEEe-EecC
Confidence 3567788899999999988999999874 577765432 33 5568876 4766
No 5
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=9.12 E-value=61 Score=24.29 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=17.2
Q ss_pred hhhhHHhhhhccCCcHHHHHHHhhCC
Q 039723 292 EREKLLCFGNYLGIRSWFKRALLNHP 317 (350)
Q Consensus 292 ~~~~L~~fr~efgLp~k~~~~l~rHP 317 (350)
..+.+..+.+++|||+. ++.|||
T Consensus 173 ~K~eV~~lA~~lglP~~---i~~~~p 195 (197)
T d1gpma1 173 FKDEVRKIGLELGLPYD---MLYRHP 195 (197)
T ss_dssp CHHHHHHHHHHTTCCHH---HHTSCC
T ss_pred cHHHHHHHHHHcCCCHH---HhCCCC
Confidence 34567778999999998 444777
No 6
>d1u78a2 a.4.1.2 (A:55-104) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
Probab=8.89 E-value=50 Score=21.41 Aligned_cols=38 Identities=24% Similarity=0.207 Sum_probs=28.6
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHhccCCCccchHHH
Q 039723 115 DADEQLVYQSQSYRQVVAGRLLKLLMISQMNKITLTMI 152 (350)
Q Consensus 115 ~~eE~~~~~~~~~~~~~v~rL~KLLMmS~~~rLpL~kl 152 (350)
.++|+.++...++.-..+.-+|+-|-+|.+++--|..|
T Consensus 9 ~rdernviraasns~kta~dir~el~l~~sk~tiln~i 46 (50)
T d1u78a2 9 VRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVI 46 (50)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHH
T ss_pred hHHHHHHHHHHhcchhhHHHHHHHHhhhhHHHHHHHHH
Confidence 47888888755555567888999999999887655544
No 7
>d1vyfa_ b.60.1.2 (A:) Fatty acid-binding protein Sm14 {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}
Probab=8.54 E-value=1.4e+02 Score=22.60 Aligned_cols=46 Identities=9% Similarity=-0.057 Sum_probs=39.3
Q ss_pred cchhhhhhHHhhhhccCCcHHHHHHHhhCCCcEEEEeeCCeeEEEE
Q 039723 288 AQKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVVL 333 (350)
Q Consensus 288 eKr~~~~~L~~fr~efgLp~k~~~~l~rHPgiFYvS~kg~~~TVfL 333 (350)
+|...-++...|=+++|+|.-.+.+....--.+-|+..|+.+|+--
T Consensus 10 wkl~~sENfdeflkalGv~~~~Rk~~~~~~p~~~i~~~Gd~~tikt 55 (135)
T d1vyfa_ 10 WKLSESHNFDAVMSKLGVSWATRQIGNTVTPTVTFTMDGDKMTMLT 55 (135)
T ss_dssp EEEEEEESHHHHHHHTTCCHHHHHHHTTCCCEEEEEEETTEEEEEE
T ss_pred EEEEeccCHHHHHHHhCCCHHHHHHHhhcCceEEEEEcCCEEEEEE
Confidence 4556678999999999999999999998888889999998877643
No 8
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=8.42 E-value=1.9e+02 Score=19.23 Aligned_cols=47 Identities=9% Similarity=-0.039 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHhhcc-cc-----------chhhhhhHHhhhhccCCcHHHHHHHhhCC
Q 039723 270 ESDKWAVAIMHEVISLF-GA-----------QKVEREKLLCFGNYLGIRSWFKRALLNHP 317 (350)
Q Consensus 270 e~EKRaVavlHELLsLT-ve-----------Kr~~~~~L~~fr~efgLp~k~~~~l~rHP 317 (350)
+.|++..+++-|+|... +. ....+.=+..++++||++-....++. ||
T Consensus 7 ~~E~~l~~i~~~vL~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~~~~l~~~~l~~-~p 65 (76)
T d2gdwa1 7 AVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFA-QP 65 (76)
T ss_dssp HHHHHHHHHHHHHTTSSCCCTTTTSSTTTCTTHHHHHHHHHHHHTTSSCCTTHHHHH-SC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCHHHcCCChHHHHHHHHHHHHHHCCCCCHHHHHc-CC
Confidence 46666666666666652 11 11223334456777777766665543 44
No 9
>d2a1va1 d.198.3.1 (A:4-134) Hypothetical protein DR2400 {Deinococcus radiodurans [TaxId: 1299]}
Probab=8.28 E-value=88 Score=23.31 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=10.4
Q ss_pred chhhHHhhCCcceE
Q 039723 79 RPMEFIRRYPSVFQ 92 (350)
Q Consensus 79 ~~~~FlrkyP~iF~ 92 (350)
....++..||.+|-
T Consensus 64 ~~~~L~~~~p~~~~ 77 (131)
T d2a1va1 64 RGEELRQAHPQSIA 77 (131)
T ss_dssp HHHHHHHHSTTTEE
T ss_pred HHHHHHhhCCCcEe
Confidence 34678899998774
No 10
>d1kqwa_ b.60.1.2 (A:) Cellular retinol-binding protein II (CRBP) {Zebrafish (Danio rerio) [TaxId: 7955]}
Probab=7.45 E-value=1.7e+02 Score=21.70 Aligned_cols=44 Identities=5% Similarity=0.005 Sum_probs=35.0
Q ss_pred chhhhhhHHhhhhccCCcHHHHHHHhhCCCcEEEEeeCCeeEEE
Q 039723 289 QKVEREKLLCFGNYLGIRSWFKRALLNHPGIFYVSNKSGMYTVV 332 (350)
Q Consensus 289 Kr~~~~~L~~fr~efgLp~k~~~~l~rHPgiFYvS~kg~~~TVf 332 (350)
|-..-+++..|=+++|+|.-.+.+...---..-|+..|+.+|+-
T Consensus 9 kl~~sENfdefLk~lGv~~~~rk~~~~~~p~~~i~~~Gd~~tik 52 (134)
T d1kqwa_ 9 EMLSNDNFEDVMKALDIDFATRKIAVHLKQTKVIVQNGDKFETK 52 (134)
T ss_dssp EEEEEESHHHHHHHTTCCHHHHHHHHTCCCEEEEEEETTEEEEE
T ss_pred EEEeccCHHHHHHHcCCCHHHHhHhhcCCccEEEEEeCCEEEEE
Confidence 44456889999999999999999998555566678888877764
Done!