Query 039724
Match_columns 251
No_of_seqs 115 out of 1042
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 12:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02433 Nodulin-21_like_2 Nodu 100.0 1.6E-55 3.4E-60 389.5 19.3 204 22-245 12-234 (234)
2 cd02432 Nodulin-21_like_1 Nodu 100.0 5.3E-55 1.2E-59 382.6 19.4 200 24-244 2-218 (218)
3 cd02435 CCC1 CCC1. CCC1: This 100.0 8.7E-54 1.9E-58 379.8 19.2 213 10-244 3-241 (241)
4 cd02434 Nodulin-21_like_3 Nodu 100.0 5.9E-53 1.3E-57 371.4 18.7 198 28-245 1-225 (225)
5 PF01988 VIT1: VIT family; In 100.0 6.1E-51 1.3E-55 355.6 18.8 195 29-243 1-213 (213)
6 KOG4473 Uncharacterized membra 100.0 9.8E-48 2.1E-52 329.3 14.5 207 19-245 24-247 (247)
7 cd02431 Ferritin_CCC1_C CCC1-r 100.0 3.1E-43 6.7E-48 291.6 17.8 149 30-244 1-149 (149)
8 cd02437 CCC1_like_1 CCC1-relat 100.0 1.6E-39 3.5E-44 276.0 18.2 174 28-244 1-175 (175)
9 TIGR00267 conserved hypothetic 100.0 2.9E-39 6.3E-44 273.2 16.5 168 31-242 1-168 (169)
10 cd02436 Nodulin-21 Nodulin-21. 100.0 3.6E-38 7.7E-43 258.6 14.1 151 28-218 1-151 (152)
11 cd01059 CCC1_like CCC1-related 100.0 4.4E-35 9.6E-40 241.3 16.3 142 30-244 1-143 (143)
12 COG1814 Uncharacterized membra 100.0 5.3E-28 1.2E-32 213.5 17.7 206 21-246 3-227 (229)
13 COG1814 Uncharacterized membra 96.4 0.059 1.3E-06 47.7 11.6 146 27-244 81-229 (229)
14 PF08006 DUF1700: Protein of u 92.9 0.73 1.6E-05 39.0 8.6 23 222-244 142-164 (181)
15 COG4709 Predicted membrane pro 86.0 10 0.00023 32.8 10.0 47 195-241 115-164 (195)
16 cd02433 Nodulin-21_like_2 Nodu 82.6 35 0.00076 30.4 13.8 81 159-241 152-234 (234)
17 TIGR02185 Trep_Strep conserved 76.7 40 0.00086 28.9 10.5 30 159-188 104-133 (189)
18 cd02434 Nodulin-21_like_3 Nodu 74.3 61 0.0013 28.5 12.4 23 217-239 201-223 (225)
19 PF01988 VIT1: VIT family; In 74.1 58 0.0013 28.2 13.1 12 128-139 97-108 (213)
20 TIGR02359 thiW thiW protein. L 73.5 37 0.0008 28.6 9.3 74 159-244 45-118 (160)
21 PF11151 DUF2929: Protein of u 73.4 11 0.00025 26.2 5.1 46 196-245 6-53 (57)
22 cd02437 CCC1_like_1 CCC1-relat 58.2 1.1E+02 0.0024 25.6 12.1 79 159-239 95-174 (175)
23 PF06374 NDUF_C2: NADH-ubiquin 53.7 46 0.00099 26.7 5.8 40 206-245 37-77 (117)
24 PF11282 DUF3082: Protein of u 50.6 1.1E+02 0.0023 23.1 7.2 42 199-241 17-67 (82)
25 COG0390 ABC-type uncharacteriz 50.5 1.5E+02 0.0032 27.0 9.2 71 169-242 12-83 (256)
26 PRK10726 hypothetical protein; 50.5 1.2E+02 0.0026 23.8 10.0 66 155-223 15-84 (105)
27 TIGR00245 conserved hypothetic 50.3 1.8E+02 0.0038 26.2 9.8 46 175-220 12-59 (248)
28 PF11712 Vma12: Endoplasmic re 50.2 81 0.0018 25.6 7.0 22 192-213 80-101 (142)
29 PF10710 DUF2512: Protein of u 49.7 81 0.0017 25.8 6.9 21 226-246 62-82 (136)
30 PF02632 BioY: BioY family; I 49.5 1.5E+02 0.0032 24.4 8.6 75 161-243 24-106 (148)
31 PF06570 DUF1129: Protein of u 48.6 66 0.0014 27.7 6.6 143 11-215 56-202 (206)
32 PF06379 RhaT: L-rhamnose-prot 46.5 90 0.002 29.6 7.5 82 159-240 98-192 (344)
33 PF08006 DUF1700: Protein of u 46.2 1.8E+02 0.0038 24.3 9.5 16 163-178 79-94 (181)
34 cd02435 CCC1 CCC1. CCC1: This 45.6 2.2E+02 0.0048 25.4 9.8 74 159-236 155-237 (241)
35 PF03547 Mem_trans: Membrane t 45.5 1.3E+02 0.0028 27.8 8.6 74 168-241 250-331 (385)
36 PF02532 PsbI: Photosystem II 45.1 24 0.00052 22.4 2.4 25 194-218 8-32 (36)
37 COG0586 DedA Uncharacterized m 43.8 2.1E+02 0.0046 24.6 11.7 47 38-86 38-85 (208)
38 PF01024 Colicin: Colicin pore 43.6 71 0.0015 27.7 5.9 40 192-240 136-175 (187)
39 TIGR02002 PTS-II-BC-glcB PTS s 43.3 1.8E+02 0.0039 28.8 9.5 60 192-251 334-413 (502)
40 PRK13871 conjugal transfer pro 41.9 1.3E+02 0.0029 24.7 6.9 51 197-248 54-105 (135)
41 COG4575 ElaB Uncharacterized c 41.6 22 0.00047 28.0 2.2 23 216-245 80-102 (104)
42 TIGR00997 ispZ intracellular s 41.1 2E+02 0.0043 24.6 8.2 10 177-186 7-16 (178)
43 TIGR00267 conserved hypothetic 40.9 2.2E+02 0.0047 23.9 10.9 22 69-93 34-55 (169)
44 PF14015 DUF4231: Protein of u 40.6 1.1E+02 0.0024 23.0 6.2 20 167-186 24-43 (112)
45 PRK10457 hypothetical protein; 40.1 1.3E+02 0.0029 22.4 6.2 24 222-245 28-51 (82)
46 PF07297 DPM2: Dolichol phosph 40.0 1.5E+02 0.0033 22.1 6.4 52 162-215 11-70 (78)
47 PRK09573 (S)-2,3-di-O-geranylg 40.0 2.8E+02 0.006 24.8 10.4 25 219-243 253-277 (279)
48 PRK10132 hypothetical protein; 39.7 28 0.00061 27.4 2.6 21 158-178 83-104 (108)
49 COG3135 BenE Uncharacterized p 39.5 3.2E+02 0.0069 26.4 9.9 66 156-225 294-363 (402)
50 COG4129 Predicted membrane pro 39.3 2.7E+02 0.0059 26.2 9.6 37 157-193 49-85 (332)
51 KOG4686 Predicted sugar transp 38.6 1.4E+02 0.0031 28.4 7.4 30 157-186 351-382 (459)
52 COG5438 Predicted multitransme 38.3 3E+02 0.0066 26.5 9.6 67 174-248 165-233 (385)
53 COG0342 SecD Preprotein transl 38.2 86 0.0019 31.2 6.3 25 160-184 435-459 (506)
54 COG1005 NuoH NADH:ubiquinone o 38.2 1.1E+02 0.0023 28.9 6.5 74 167-242 90-173 (332)
55 PHA00094 VI minor coat protein 38.1 1.1E+02 0.0023 24.4 5.6 10 206-215 21-30 (112)
56 COG4709 Predicted membrane pro 37.7 2.8E+02 0.006 24.2 9.5 42 166-210 82-123 (195)
57 PRK10404 hypothetical protein; 37.6 27 0.00059 27.1 2.2 22 217-245 78-99 (101)
58 PF11505 DUF3216: Protein of u 37.4 24 0.00053 27.1 1.9 25 22-46 34-58 (97)
59 KOG4516 NADH:ubiquinone oxidor 37.4 1.3E+02 0.0027 23.9 5.8 37 207-243 40-76 (118)
60 PF09964 DUF2198: Uncharacteri 36.2 1.8E+02 0.0038 21.5 7.4 65 172-244 3-67 (74)
61 PF06738 DUF1212: Protein of u 35.9 2.6E+02 0.0056 23.3 9.7 16 158-173 100-115 (193)
62 PF03594 BenE: Benzoate membra 35.4 3.6E+02 0.0077 26.0 9.7 69 157-227 280-350 (378)
63 KOG4783 Uncharacterized conser 35.1 2.2E+02 0.0047 22.2 7.3 61 162-222 24-98 (102)
64 COG0728 MviN Uncharacterized m 33.6 4.3E+02 0.0094 26.4 10.4 87 155-245 382-473 (518)
65 PF04279 IspA: Intracellular s 33.3 2.7E+02 0.0059 23.6 7.9 10 177-186 7-16 (176)
66 PRK00259 intracellular septati 33.0 2.7E+02 0.0059 23.7 7.8 10 177-186 7-16 (179)
67 PF07907 YibE_F: YibE/F-like p 31.7 3.7E+02 0.008 24.0 8.8 30 221-250 78-107 (244)
68 PF09835 DUF2062: Uncharacteri 31.6 2.8E+02 0.006 22.4 11.6 25 158-183 16-40 (154)
69 PF11381 DUF3185: Protein of u 30.8 1.4E+02 0.0031 20.9 4.8 42 196-238 6-56 (59)
70 COG2917 Intracellular septatio 30.3 1.7E+02 0.0036 25.2 6.0 10 177-186 7-16 (180)
71 PRK14995 methyl viologen resis 29.9 2.4E+02 0.0051 27.1 7.8 12 205-216 313-324 (495)
72 PF11239 DUF3040: Protein of u 29.1 49 0.0011 24.3 2.3 30 45-74 51-80 (82)
73 TIGR03082 Gneg_AbrB_dup membra 28.7 3.3E+02 0.0071 22.3 8.5 76 159-234 45-120 (156)
74 PF11833 DUF3353: Protein of u 28.3 3.8E+02 0.0083 23.1 8.1 26 216-245 136-161 (194)
75 PRK11469 hypothetical protein; 27.4 3.9E+02 0.0084 22.8 7.9 45 32-82 40-84 (188)
76 PRK15050 2-aminoethylphosphona 27.3 4.2E+02 0.0092 23.6 8.6 24 160-183 23-46 (296)
77 PF05628 Borrelia_P13: Borreli 27.2 81 0.0018 25.9 3.4 48 198-245 44-94 (135)
78 PF07155 ECF-ribofla_trS: ECF- 27.0 3.4E+02 0.0074 22.0 8.8 15 57-71 3-17 (169)
79 PRK10263 DNA translocase FtsK; 26.9 2.3E+02 0.0051 31.7 7.7 24 161-184 66-89 (1355)
80 PRK11375 allantoin permease; P 26.8 1.6E+02 0.0036 28.8 6.2 64 24-87 24-88 (484)
81 PF14257 DUF4349: Domain of un 26.4 57 0.0012 29.0 2.7 12 159-170 215-226 (262)
82 PF12084 DUF3561: Protein of u 26.2 3.3E+02 0.0071 21.5 7.7 66 155-224 18-88 (107)
83 TIGR01594 holin_lambda phage h 26.0 3.2E+02 0.007 21.3 6.8 31 206-236 32-62 (107)
84 TIGR00843 benE benzoate transp 25.5 5E+02 0.011 25.1 9.0 81 157-242 296-389 (395)
85 PHA02753 hypothetical protein; 25.2 5E+02 0.011 23.3 9.2 82 162-248 191-275 (298)
86 PF12670 DUF3792: Protein of u 25.0 3.3E+02 0.0072 21.2 10.0 46 194-239 41-87 (116)
87 PRK14231 camphor resistance pr 24.6 3.7E+02 0.008 21.5 8.6 35 216-250 89-126 (129)
88 PF04956 TrbC: TrbC/VIRB2 fami 24.4 3E+02 0.0064 20.4 7.2 31 211-242 68-98 (99)
89 PRK08319 cobalt transport prot 24.4 4.8E+02 0.01 22.8 10.4 32 215-246 101-132 (224)
90 PRK03562 glutathione-regulated 24.4 5.5E+02 0.012 26.0 9.6 12 73-84 239-250 (621)
91 COG2966 Uncharacterized conser 24.2 5.3E+02 0.011 23.2 9.8 76 155-238 119-194 (250)
92 CHL00024 psbI photosystem II p 24.2 23 0.00051 22.4 -0.2 24 195-218 9-32 (36)
93 COG0586 DedA Uncharacterized m 24.0 2.3E+02 0.005 24.4 6.0 34 212-245 49-82 (208)
94 PF14362 DUF4407: Domain of un 23.8 5.4E+02 0.012 23.2 10.5 55 190-244 46-101 (301)
95 PRK13499 rhamnose-proton sympo 23.8 6E+02 0.013 24.0 9.1 22 218-239 171-192 (345)
96 PF06779 DUF1228: Protein of u 23.3 2.5E+02 0.0054 21.0 5.2 13 174-186 8-20 (85)
97 PF05461 ApoL: Apolipoprotein 23.3 2E+02 0.0043 26.8 5.7 58 29-86 95-158 (313)
98 PF03649 UPF0014: Uncharacteri 22.8 5.6E+02 0.012 23.0 9.2 27 190-216 34-60 (250)
99 TIGR02139 permease_CysT sulfat 22.8 3.7E+02 0.008 23.5 7.2 10 174-183 18-27 (265)
100 cd02432 Nodulin-21_like_1 Nodu 22.6 5.2E+02 0.011 22.6 14.1 18 164-181 142-159 (218)
101 PF09335 SNARE_assoc: SNARE as 22.4 3.4E+02 0.0074 20.3 8.1 27 58-84 17-43 (123)
102 PRK12585 putative monovalent c 22.3 5.3E+02 0.012 22.5 8.5 29 220-248 68-96 (197)
103 PF11990 DUF3487: Protein of u 22.3 4.1E+02 0.0089 21.2 7.1 14 204-217 66-79 (121)
104 TIGR03766 conserved hypothetic 22.2 6E+02 0.013 24.8 9.1 16 217-232 213-228 (483)
105 COG3333 Uncharacterized protei 22.2 5.8E+02 0.013 25.4 8.7 68 163-231 108-177 (504)
106 PF03176 MMPL: MMPL family; I 22.0 5.9E+02 0.013 22.9 13.1 24 160-183 249-273 (333)
107 KOG3488 Dolichol phosphate-man 22.0 3.3E+02 0.0072 20.0 6.1 28 189-216 46-73 (81)
108 PF04156 IncA: IncA protein; 21.7 4.4E+02 0.0094 21.9 7.2 10 202-211 50-59 (191)
109 PF12822 DUF3816: Protein of u 21.6 4.3E+02 0.0094 21.2 8.1 20 159-178 42-61 (172)
110 KOG1935 Membrane protein Patch 21.6 4.4E+02 0.0095 28.5 8.1 24 159-182 515-538 (1143)
111 COG0670 Integral membrane prot 21.4 5.8E+02 0.013 22.6 8.9 56 178-234 102-159 (233)
112 TIGR00843 benE benzoate transp 21.4 1.6E+02 0.0035 28.4 4.8 46 22-67 294-340 (395)
113 PF04246 RseC_MucC: Positive r 21.4 3.5E+02 0.0075 21.4 6.2 10 159-168 65-74 (135)
114 TIGR03546 conserved hypothetic 21.4 4.8E+02 0.01 21.7 8.9 26 157-183 12-37 (154)
115 PF14927 Neurensin: Neurensin 21.2 1.6E+02 0.0036 24.2 4.2 26 161-186 43-68 (140)
116 PF14034 Spore_YtrH: Sporulati 21.1 4.1E+02 0.0089 20.8 6.7 30 205-234 18-51 (102)
117 PF06072 Herpes_US9: Alphaherp 20.9 1.4E+02 0.0031 21.1 3.2 15 69-83 43-57 (60)
118 PF04018 DUF368: Domain of unk 20.6 3.8E+02 0.0082 24.3 6.8 17 170-186 87-103 (257)
119 COG4512 AgrB Membrane protein 20.5 3.6E+02 0.0078 23.4 6.2 36 170-206 87-122 (198)
120 PF13779 DUF4175: Domain of un 20.5 2.5E+02 0.0054 29.8 6.3 45 161-209 9-53 (820)
121 PF05106 Phage_holin_3: Phage 20.5 4E+02 0.0086 20.4 6.9 35 206-240 30-64 (100)
122 PF11808 DUF3329: Domain of un 20.3 1.7E+02 0.0038 21.8 3.9 20 194-213 9-28 (90)
123 PRK10714 undecaprenyl phosphat 20.2 4E+02 0.0088 24.4 7.1 18 65-82 77-94 (325)
124 PRK01844 hypothetical protein; 20.1 3.1E+02 0.0068 20.1 5.0 23 124-146 35-57 (72)
No 1
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=1.6e-55 Score=389.51 Aligned_cols=204 Identities=33% Similarity=0.427 Sum_probs=183.4
Q ss_pred hhhhhhhhHHHHHhhcCchHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccchhhh
Q 039724 22 ERIQRGQWIRAAILGANDGLLSTTSLMLGVGAAKEDRRSMVLSGLAGALAGACSMAVGEFVSVSTQRDIQKATTSTNCER 101 (251)
Q Consensus 22 ~~~~~~~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~d~~~a~~~~~~~~ 101 (251)
+..++.+|+|++|||+||||||+|++|+|++|++.|+.+|+++|+++++||++|||+|+|+|+|+|+|.+++
T Consensus 12 ~~~~~~~~lr~~VlG~nDGlvt~falvaG~aga~~~~~~Vl~~Gla~liAga~SMa~GeYls~kse~d~~~~-------- 83 (234)
T cd02433 12 GRHRMSGNLRAAVFGANDGLVSNLALVMGVAGAGVSNQTILLTGLAGLLAGALSMAAGEYVSVTSQRELLEA-------- 83 (234)
T ss_pred chhhhhhHHHHHHHhccchHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH--------
Confidence 345689999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhccccHHhhhhhhcCCCCCCCCCcccchHHHHHHHcCCCCCc-----------------chhcc-cc-ccccCCChH
Q 039724 102 VMKLDITSVKETKLHETEPKLPTIFSPGRSPMMKVVIEDAKTFPS-----------------SSELR-DD-LQEVLPNPF 162 (251)
Q Consensus 102 ~~~~~~~~e~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~~~~-----------------~~~~e-~~-~~~~~~~P~ 162 (251)
|++||+|+ ++++|++|++|+.++|+++|+++++ .||++ +. .+++..|||
T Consensus 84 ----------~~~re~~~--i~~~p~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~e~g~~~~~~~~P~ 151 (234)
T cd02433 84 ----------SIPDERRE--LRKHPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTLAREELGLDPELLGNPW 151 (234)
T ss_pred ----------HHHHHHHH--hhhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHHHHHhcCCCccccCCHH
Confidence 56666654 7789999999999999999998532 34433 32 345568999
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 039724 163 KAAAASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGLLK 242 (251)
Q Consensus 163 ~sal~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~iG~ 242 (251)
++|++||+||++|+++||+||+|..+...++.+|+++++++|+++|++|+++++.||||+++||+++|++|++++|++|+
T Consensus 152 ~aAl~sflsF~ig~liPLLPf~~~~~~~~~~~~s~~~~~~~L~~lG~~~a~~s~~~~~~~~l~~~~~G~~aa~vsy~iG~ 231 (234)
T cd02433 152 SAAVSSFLLFALGALIPVLPFLFGMSGLAALVLSVLLVGLALLATGAVTGLLSGRSPGISALRQLAIGGGAAAVTYLLGL 231 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987655567889999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q 039724 243 PFD 245 (251)
Q Consensus 243 l~~ 245 (251)
+|+
T Consensus 232 l~~ 234 (234)
T cd02433 232 LFG 234 (234)
T ss_pred HcC
Confidence 985
No 2
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=5.3e-55 Score=382.55 Aligned_cols=200 Identities=37% Similarity=0.531 Sum_probs=179.1
Q ss_pred hhhhhhHHHHHhhcCchHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccchhhhhh
Q 039724 24 IQRGQWIRAAILGANDGLLSTTSLMLGVGAAKEDRRSMVLSGLAGALAGACSMAVGEFVSVSTQRDIQKATTSTNCERVM 103 (251)
Q Consensus 24 ~~~~~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~d~~~a~~~~~~~~~~ 103 (251)
+.+.+|+|++|||+||||||+||+|+|++|++.|+.+|+++|+++++||++|||+|+|+|+|+|+|.+++
T Consensus 2 ~~~~~~lr~~V~G~~DGlvs~~alvaG~aga~~~~~~Ill~Gla~l~Aga~SMa~G~yls~~sq~d~~~~---------- 71 (218)
T cd02432 2 IERLNWLRAAVLGANDGIVSVAGLVVGVAAATASSFTILIAGLAGLVAGALSMAAGEYVSVSSQRDTEKA---------- 71 (218)
T ss_pred chhHhHHHHHHHhccchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----------
Confidence 3578999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccccHHhhhhhhcCCCCCCCCCcccchHHHHHHHcCCCCCc---------------chhcc-cc-ccccCCChHHHHH
Q 039724 104 KLDITSVKETKLHETEPKLPTIFSPGRSPMMKVVIEDAKTFPS---------------SSELR-DD-LQEVLPNPFKAAA 166 (251)
Q Consensus 104 ~~~~~~e~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~~~~---------------~~~~e-~~-~~~~~~~P~~sal 166 (251)
|++||+|+ ++++|++|++|+.++|+++|+++++ .|+++ +. .+++..|||++|+
T Consensus 72 --------~~~~e~~~--i~~~p~~e~~el~~~~~~~G~~~~~a~~~a~~l~~~~~~~~~~~~e~g~~~~~~~~p~~aal 141 (218)
T cd02432 72 --------DIAKERRE--LAEDPEAELEELADIYEERGLSPELARQVADELMAKDALEAHARDELGITEGEYANPWQAAL 141 (218)
T ss_pred --------HHHHHHHH--HHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 55555553 6788999999999999999998532 34433 22 3455679999999
Q ss_pred HHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 039724 167 ASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGLLKPF 244 (251)
Q Consensus 167 ~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~iG~l~ 244 (251)
+||+||++|+++||+||+|.+. ..++++|+++++++|+++|++|+++++.||||+++||+++|++||++||++|++|
T Consensus 142 ~s~~sf~lg~liPllpy~~~~~-~~~~~~s~~~~~~aL~~~G~~~a~~~~~~~~~~~l~~~~iG~~aa~vty~iG~l~ 218 (218)
T cd02432 142 ASAISFSVGALLPLLAILLAPA-AWKVPVTIIATLLALALTGYVSARLGGASVLRAILRNVIWGALAMALTYLIGRLF 218 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999987654 5568899999999999999999999999999999999999999999999999875
No 3
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=100.00 E-value=8.7e-54 Score=379.83 Aligned_cols=213 Identities=23% Similarity=0.309 Sum_probs=184.6
Q ss_pred CCCChhhhhhhhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHH
Q 039724 10 CAPDHENLGMMKERIQRGQWIRAAILGANDGLLSTTSLMLGVGAAKEDRRSMVLSGLAGALAGACSMAVGEFVSVSTQRD 89 (251)
Q Consensus 10 ~~~h~~~~~~~~~~~~~~~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~d 89 (251)
+..|..+.|.+.| ..+.+|+|++|||+||||||+||+|+|++|++ ++++|+++|+++++||++|||+|+|+|+|+|+|
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~lr~~VlG~nDGlvs~~alvaGvag~~-~~~~vll~Gla~liAgA~SMa~GeYlS~~sq~d 80 (241)
T cd02435 3 SSQHSTSSHSEKH-FTSPRIVRDIIIGLSDGLTVPFALTAGLSSLG-DTKLVITGGLAELAAGAISMGLGGYLAAKSERD 80 (241)
T ss_pred cccCCCCCCcccc-ccccchHHHHHhhcchhhHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHhhHHHhhhhHH
Confidence 3455555556666 46788999999999999999999999999987 599999999999999999999999999999999
Q ss_pred HHHhhccchhhhhhhhccccHHhhhhhhcCCCCCCCCCcccch-HHHHHHHcCCCCC------------------cchhc
Q 039724 90 IQKATTSTNCERVMKLDITSVKETKLHETEPKLPTIFSPGRSP-MMKVVIEDAKTFP------------------SSSEL 150 (251)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~e~E~~re~~e~~l~~~~~~e~~e-l~~i~~~~g~~~~------------------~~~~~ 150 (251)
.+++ |++||+|+ ++++|+.|++| +.++|+++|++++ +.|++
T Consensus 81 ~~~~------------------~~~~e~~~--i~~~~~~E~~e~l~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~ 140 (241)
T cd02435 81 HYQR------------------EHKRKQEA--VEASPSTEQEEIILYDLVQYGLVPLETAASTVTDLRKNPQALVDFLMR 140 (241)
T ss_pred HHHH------------------HHHHHHHH--HhhCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 9988 45555553 67889999999 9999999998753 22333
Q ss_pred c-cc-ccccCCChHHHHHHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChh-----HHH
Q 039724 151 R-DD-LQEVLPNPFKAAAASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIR-----VSA 223 (251)
Q Consensus 151 e-~~-~~~~~~~P~~sal~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~-----~~~ 223 (251)
+ +. .+++..|||++|+++|+||++|+++||+||+|..+...++.+|+++++++|+++|++++++++.+++ +++
T Consensus 141 ~elg~~~~~~~~p~~aAl~s~lsf~lG~liPLlPy~~~~~~~~a~~~si~l~~~aL~ilG~~~s~~s~~~~~~~~~~~s~ 220 (241)
T cd02435 141 FGLGLEEPDTSRALISALTIGLSYFIGGLIPLLPYFFVSTVGEALLLSVIVTLVALFVFGYVKTWFTGGWGGAGGGVWGA 220 (241)
T ss_pred HhhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHH
Confidence 3 22 3445679999999999999999999999998876566789999999999999999999999999988 999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 039724 224 VRVLVGGWIAMGVTYGLLKPF 244 (251)
Q Consensus 224 l~~l~~G~~aa~~~y~iG~l~ 244 (251)
+||+++|++||+++|+++++|
T Consensus 221 lrml~~G~~aa~vty~l~~~~ 241 (241)
T cd02435 221 VQMLVVGGLAAGAAWGLVKLL 241 (241)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999986
No 4
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=5.9e-53 Score=371.40 Aligned_cols=198 Identities=25% Similarity=0.374 Sum_probs=176.5
Q ss_pred hhHHHHHhhcCchHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccchhhhhhhhcc
Q 039724 28 QWIRAAILGANDGLLSTTSLMLGVGAAKEDRRSMVLSGLAGALAGACSMAVGEFVSVSTQRDIQKATTSTNCERVMKLDI 107 (251)
Q Consensus 28 ~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~d~~~a~~~~~~~~~~~~~~ 107 (251)
+|+|++|||+||||+|+||+|+|++|++.|+.+|+++|+++++||++|||+|+|+|+|+|+|.+++
T Consensus 1 ~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~ili~Gla~liAga~SMa~GeYls~kse~d~~~~-------------- 66 (225)
T cd02434 1 EYLKSIVFGGLDGIVTIFAIVAGVVGAGLSPFVILIIGFANLLADGISMAAGEYVSTKAERDFLHS-------------- 66 (225)
T ss_pred CcHHHHhhcchhhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------------
Confidence 589999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccHHhhhhhhcCCCCCCCCCcccchHHHHHHHcCCCCC-----------------cchhcc-cc-cccc-CCChHHHHHH
Q 039724 108 TSVKETKLHETEPKLPTIFSPGRSPMMKVVIEDAKTFP-----------------SSSELR-DD-LQEV-LPNPFKAAAA 167 (251)
Q Consensus 108 ~~e~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~~~-----------------~~~~~e-~~-~~~~-~~~P~~sal~ 167 (251)
|++||+|| ++++|+.|++||.++|+++|++++ ++||++ +. .+++ ..|||++|++
T Consensus 67 ----e~~re~~~--i~~~pe~E~~el~~iy~~kG~~~~~a~~v~~~l~~~~~~~~~~m~~~elg~~~~~~~~~P~~aAl~ 140 (225)
T cd02434 67 ----EKKREEWE--IENYPEGEKSEMVEIYSLKGLSEEVADQVVELLSKYRKLFVDIMMTEELGLIPDDELPSPLKTALV 140 (225)
T ss_pred ----HHHHHHHH--HHhCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCchhhHHHHHHhhccCCCCcccCCHHHHHHH
Confidence 66777664 778999999999999999998753 234443 32 2233 4799999999
Q ss_pred HHHHHHHhhhhhhhhHHhhhh------hhHHHHHHHHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHH
Q 039724 168 SALAFLCGSFVPLLPAILFAR------YIVRIVVIAIV-TSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGL 240 (251)
Q Consensus 168 s~lsf~iggliPLlpy~~~~~------~~~a~~~s~~~-t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~i 240 (251)
||+||++|+++||+||++..+ ....+.+|+++ ++++|+++|++|+++++.||+|+++||+++|++|++++|++
T Consensus 141 sflsf~~ggliPLlp~~~~~~~~~~~~~~~~~~~s~~~~~~~~L~~~G~~~~~~~~~~~~~~~l~~~~~G~~aa~~ty~i 220 (225)
T cd02434 141 TFLSFLVFGIIPLLPYLLGLYYYSQKEIDSVFALSILIFVAFTLFLLGSFKSKLYNGKWIISGIIMLINGAASGGVSFFL 220 (225)
T ss_pred HHHHHHHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987653 24567888888 99999999999999999999999999999999999999999
Q ss_pred Hhhhc
Q 039724 241 LKPFD 245 (251)
Q Consensus 241 G~l~~ 245 (251)
|++|.
T Consensus 221 G~l~~ 225 (225)
T cd02434 221 GVLFT 225 (225)
T ss_pred HhhcC
Confidence 99874
No 5
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=100.00 E-value=6.1e-51 Score=355.64 Aligned_cols=195 Identities=34% Similarity=0.492 Sum_probs=176.5
Q ss_pred hHHHHHhhcCchHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccchhhhhhhhccc
Q 039724 29 WIRAAILGANDGLLSTTSLMLGVGAAKEDRRSMVLSGLAGALAGACSMAVGEFVSVSTQRDIQKATTSTNCERVMKLDIT 108 (251)
Q Consensus 29 ~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~d~~~a~~~~~~~~~~~~~~~ 108 (251)
|+|++|||+|||++|++++|+|+++++.|+.+|+++|+++++||++|||+|+|+|+|+|+|++++
T Consensus 1 ~~r~~V~G~~DGlv~~~~lv~G~a~a~~~~~~vl~~gla~~iAga~SMa~G~yls~~se~~~~~~--------------- 65 (213)
T PF01988_consen 1 WLRDAVFGANDGLVTTFGLVAGVAGAGVSSSVVLLAGLAGLIAGAISMAVGEYLSVKSERDLYEA--------------- 65 (213)
T ss_pred ChHHHHhhccchHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---------------
Confidence 89999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHhhhhhhcCCCCCCCCCcccchHHHHHHHcCCCCCc----------------chhccc--cccccCCChHHHHHHHHH
Q 039724 109 SVKETKLHETEPKLPTIFSPGRSPMMKVVIEDAKTFPS----------------SSELRD--DLQEVLPNPFKAAAASAL 170 (251)
Q Consensus 109 ~e~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~~~~----------------~~~~e~--~~~~~~~~P~~sal~s~l 170 (251)
|++||+|| ++++|++|++|+.++|+++|++.++ .|++++ ..+++..+||++|+++|+
T Consensus 66 ---e~~re~~e--~~~~pe~e~~el~~iy~~~Gl~~~~a~~i~~~l~~~~~~~~~m~~ee~g~~~~~~~~p~~~al~~~~ 140 (213)
T PF01988_consen 66 ---EREREEWE--LENNPEEEKEELVEIYRAKGLSEEDAEEIAEELSKDKDALDFMMREELGLSPEEEESPWKAALATFL 140 (213)
T ss_pred ---HhHHHHHH--HHhChHhHHHHHHHHHHHCCCCHHHHHHHHHHHHhCchHHHHHHhhhccCCccccchHHHHHHHHHH
Confidence 56666664 7789999999999999999998532 233332 244667899999999999
Q ss_pred HHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 039724 171 AFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGLLKP 243 (251)
Q Consensus 171 sf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~iG~l 243 (251)
||++|+++|++||++.+....++.+|+++++++|+++|++|++++++||+|+++||+++|+++++++|++|+|
T Consensus 141 sf~lg~liPllp~~~~~~~~~a~~~s~~~~~~~L~~~G~~~a~~~~~~~~~~~l~~~~~G~~aa~~~~~iG~L 213 (213)
T PF01988_consen 141 SFILGGLIPLLPYFFLPSVSEAFIASIAVTILALFILGYFKARISGQSWWRSGLEMLLIGLIAAAVTYLIGYL 213 (213)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999987512378999999999999999999999999999999999999999999999999986
No 6
>KOG4473 consensus Uncharacterized membrane protein [Function unknown]
Probab=100.00 E-value=9.8e-48 Score=329.35 Aligned_cols=207 Identities=45% Similarity=0.701 Sum_probs=177.9
Q ss_pred hhhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccch
Q 039724 19 MMKERIQRGQWIRAAILGANDGLLSTTSLMLGVGAAKEDRRSMVLSGLAGALAGACSMAVGEFVSVSTQRDIQKATTSTN 98 (251)
Q Consensus 19 ~~~~~~~~~~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~d~~~a~~~~~ 98 (251)
++.++.++.+|+|++|+|.||||++++++.+|+.++..|.++++++|+|+++|||+|||+|+|+|+|||+|++.+..
T Consensus 24 ~~~~~~~~~~wlra~vlGanDGL~s~~sL~~Gv~a~~advki~l~~GfAglvaGA~SMaiGeyvsv~Sq~D~e~ae~--- 100 (247)
T KOG4473|consen 24 KTFDYFKRAQWLRAAVLGANDGLVSPASLMMGVGAAKADVKIMLLTGFAGLVAGACSMAIGEYVSVKSQYDIEVAEV--- 100 (247)
T ss_pred hhhhhHHHHHHHHHHHhccccCcccHHHHHHhhhhccCCeeEeeehhHHHHHhhhHHHhhccceeecchhhHHHHHH---
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999933
Q ss_pred hhhhhhhccccHHhhhhhhcCCCCCCCCCcccchHHHHHHHcCCC---------------CCcchhcccc--ccccCCCh
Q 039724 99 CERVMKLDITSVKETKLHETEPKLPTIFSPGRSPMMKVVIEDAKT---------------FPSSSELRDD--LQEVLPNP 161 (251)
Q Consensus 99 ~~~~~~~~~~~e~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~---------------~~~~~~~e~~--~~~~~~~P 161 (251)
|+|++| ...+++-|.+|+.+||.....+ +.|.+++++. ......+|
T Consensus 101 ---------------q~erre--~~a~~~~e~~E~~~Il~g~~~~E~lpvi~alq~~p~~~ldf~~R~elGl~~p~~~~p 163 (247)
T KOG4473|consen 101 ---------------QMERRE--FYANSNLENDEIADILLGEEEKEELPVIKALQRTPELMLDFIIRYELGLDEPAENRP 163 (247)
T ss_pred ---------------HHHHHH--hhccchhhhHHHHHHhcCCCchhccchhHHhhhChHHHHHHHHHhhcccCCCCCCch
Confidence 333322 3345666777777777643332 2234544432 33456799
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 039724 162 FKAAAASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGLL 241 (251)
Q Consensus 162 ~~sal~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~iG 241 (251)
.++|++++++|.+||++||+||+|++++..+...+++++.++||.|||+++++++.+..|+++|++++|++|+++||+++
T Consensus 164 ~qaA~asa~afslGg~vPLl~~~fi~~~~~~~v~~vv~~~~aL~~fG~~ga~lg~ak~vrs~~r~vv~G~lAmaatf~l~ 243 (247)
T KOG4473|consen 164 LQAAAASALAFSLGGIVPLLPAAFVKDYKVRIVVSVVATTFALFMFGYVGAHLGKAKVVRSSVRVVVGGWLAMAATFGLT 243 (247)
T ss_pred HHHHHHHHHHHHhccHHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 039724 242 KPFD 245 (251)
Q Consensus 242 ~l~~ 245 (251)
++++
T Consensus 244 Klig 247 (247)
T KOG4473|consen 244 KLIG 247 (247)
T ss_pred HhcC
Confidence 9975
No 7
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=100.00 E-value=3.1e-43 Score=291.64 Aligned_cols=149 Identities=24% Similarity=0.392 Sum_probs=140.3
Q ss_pred HHHHHhhcCchHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccchhhhhhhhcccc
Q 039724 30 IRAAILGANDGLLSTTSLMLGVGAAKEDRRSMVLSGLAGALAGACSMAVGEFVSVSTQRDIQKATTSTNCERVMKLDITS 109 (251)
Q Consensus 30 lr~~V~G~~DGlvt~~alvaG~aga~~~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~d~~~a~~~~~~~~~~~~~~~~ 109 (251)
+|++|||+|||++|++++++|++|+..|+.+|+++|+++++||++||++|||+|+|+|+|.+++
T Consensus 1 ~r~~V~G~~DGlvt~~~~v~G~aga~~~~~~i~~~Gl~~~iA~a~SMa~G~YlS~kse~d~~~~---------------- 64 (149)
T cd02431 1 VGDFVLGLNDALVEITGALAGLTGAINNTILVGLSGLIVGIAAALSMAIGAYLSTKSESGVKES---------------- 64 (149)
T ss_pred CchhhccccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHhc----------------
Confidence 5899999999999999999999999999999999999999999999999999999998764321
Q ss_pred HHhhhhhhcCCCCCCCCCcccchHHHHHHHcCCCCCcchhccccccccCCChHHHHHHHHHHHHHhhhhhhhhHHhhhhh
Q 039724 110 VKETKLHETEPKLPTIFSPGRSPMMKVVIEDAKTFPSSSELRDDLQEVLPNPFKAAAASALAFLCGSFVPLLPAILFARY 189 (251)
Q Consensus 110 e~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~~~~~~~~e~~~~~~~~~P~~sal~s~lsf~iggliPLlpy~~~~~~ 189 (251)
|||++|++||+||++|+++|++||++.++.
T Consensus 65 --------------------------------------------------~p~~~al~s~~sf~~g~~iPllp~~~~~~~ 94 (149)
T cd02431 65 --------------------------------------------------NPVKSALYTGIAYIIGVVIPILPYLLLSSV 94 (149)
T ss_pred --------------------------------------------------chHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 799999999999999999999999887655
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 039724 190 IVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGLLKPF 244 (251)
Q Consensus 190 ~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~iG~l~ 244 (251)
..++.++++++.++|+++|++++++++++|+|+++||+++|+++++++|++|+++
T Consensus 95 ~~a~~~s~~~~~~~L~~~G~~~~~~s~~~~~~~~l~~~~~G~~aa~~t~~iG~l~ 149 (149)
T cd02431 95 YLALALSVTLAVLAILIFNFYISVASGISFRKKFIEMAGLALGAAFISFLLGYLL 149 (149)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6789999999999999999999999999999999999999999999999999875
No 8
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=100.00 E-value=1.6e-39 Score=276.03 Aligned_cols=174 Identities=20% Similarity=0.235 Sum_probs=144.8
Q ss_pred hhHHHHHhhcCchHHHHHHHHHHhhhccC-ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccchhhhhhhhc
Q 039724 28 QWIRAAILGANDGLLSTTSLMLGVGAAKE-DRRSMVLSGLAGALAGACSMAVGEFVSVSTQRDIQKATTSTNCERVMKLD 106 (251)
Q Consensus 28 ~~lr~~V~G~~DGlvt~~alvaG~aga~~-~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~d~~~a~~~~~~~~~~~~~ 106 (251)
+++|++|||+|||++|++++++|+++++. |+++|+++|+++++|+++||++|+|+|+|+|+ +
T Consensus 1 ~~~r~~V~G~~DGivs~~~~v~G~~~a~~~~~~~i~~~Gla~~iA~a~Sma~g~yvs~~~~~----~------------- 63 (175)
T cd02437 1 STIRYGIYGLIDGSLSTLGVVFGASLAFDLDPKIIIAAGLGGAFALGISNGLGAAVAEEGSL----R------------- 63 (175)
T ss_pred CchHHHhhccccchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-------------
Confidence 36899999999999999999999999988 99999999999999999999999999987642 1
Q ss_pred cccHHhhhhhhcCCCCCCCCCcccchHHHHHHHcCCCCCcchhccccccccCCChHHHHHHHHHHHHHhhhhhhhhHHhh
Q 039724 107 ITSVKETKLHETEPKLPTIFSPGRSPMMKVVIEDAKTFPSSSELRDDLQEVLPNPFKAAAASALAFLCGSFVPLLPAILF 186 (251)
Q Consensus 107 ~~~e~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~~~~~~~~e~~~~~~~~~P~~sal~s~lsf~iggliPLlpy~~~ 186 (251)
|+.++++ +++.+.+++ +.|++++ .....+||+++++++++|++|+++||+||++.
T Consensus 64 -----~~~~~~~------~~~~~~~~~------------~~~~~~e--~~~~~~~~~~al~sgls~~~G~llPLlp~~~~ 118 (175)
T cd02437 64 -----GMLEEKE------KILLRLEQM------------LTSTREE--LAIRKADLPSGLIQGISTTLGGLLPLLPFLPF 118 (175)
T ss_pred -----HHHHHHh------ChhhhHHHH------------HHHHHHH--hccccChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 112222222 2233333 23447999999999999999999999999875
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 039724 187 ARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGLLKPF 244 (251)
Q Consensus 187 ~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~iG~l~ 244 (251)
+ ...++.+++++++++|+++|++|+++++.||+++++|++++|+++++++|++|++|
T Consensus 119 ~-~~~a~~~si~~~~~~L~~~G~~~~~~~~~~~~~~~~r~~~~g~la~~~t~~vg~l~ 175 (175)
T cd02437 119 D-LWLAAGIAVAIVLAILFILGLVIGKISKINVAISFVWAVGMVITGISLVFSVGKLF 175 (175)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3 56789999999999999999999999999999999999999999999999999986
No 9
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=100.00 E-value=2.9e-39 Score=273.19 Aligned_cols=168 Identities=21% Similarity=0.367 Sum_probs=139.2
Q ss_pred HHHHhhcCchHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccchhhhhhhhccccH
Q 039724 31 RAAILGANDGLLSTTSLMLGVGAAKEDRRSMVLSGLAGALAGACSMAVGEFVSVSTQRDIQKATTSTNCERVMKLDITSV 110 (251)
Q Consensus 31 r~~V~G~~DGlvt~~alvaG~aga~~~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~d~~~a~~~~~~~~~~~~~~~~e 110 (251)
|++|+|+|||++|++++|+|++++ .++.+|+++|+++++|+++||++|+|++.|+|++.++.+.
T Consensus 1 R~~VlG~~DGils~~giv~G~~~~-~~~~~i~~~Gla~~vA~a~Sma~GeYv~e~ae~~~e~~el--------------- 64 (169)
T TIGR00267 1 RYVVRGTIDGTLSALGVVGGASGS-VDNYVIILAGLGGGVANGMSNAFGAFTAERAEEEREMREL--------------- 64 (169)
T ss_pred CceeeccchHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 789999999999999999997555 5777999999999999999999999998887765333311
Q ss_pred HhhhhhhcCCCCCCCCCcccchHHHHHHHcCCCCCcchhccccccccCCChHHHHHHHHHHHHHhhhhhhhhHHhhhhhh
Q 039724 111 KETKLHETEPKLPTIFSPGRSPMMKVVIEDAKTFPSSSELRDDLQEVLPNPFKAAAASALAFLCGSFVPLLPAILFARYI 190 (251)
Q Consensus 111 ~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~~~~~~~~e~~~~~~~~~P~~sal~s~lsf~iggliPLlpy~~~~~~~ 190 (251)
|++ .|+++|++++.. ..+....|||++|++++++|++|+++|++||++ .+..
T Consensus 65 -e~~---------------------~~~~~g~~~~~~-----~~~~~~~~p~~aAl~sgls~~~g~liPllp~~~-~~~~ 116 (169)
T TIGR00267 65 -EKS---------------------MLMDEGKLDDTI-----IYKQARRRVYMSGFIDGFSTFMGSFVPVLPFLV-FDRM 116 (169)
T ss_pred -HHH---------------------HHHhcCCCchhh-----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-cchh
Confidence 111 123334433221 112233599999999999999999999999987 5567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 039724 191 VRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGLLK 242 (251)
Q Consensus 191 ~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~iG~ 242 (251)
.++.+++++++++|+++|++++++++.||+|+++||+++|+++++++|++|.
T Consensus 117 ~a~~~s~~~~~~~L~ilG~~~a~~s~~~~~~s~lr~~~~G~~aa~it~~iG~ 168 (169)
T TIGR00267 117 TATIVTVLLTLIALLVLGVYLGRISRENILISSLKMVVIGLLVAVVSLLIEG 168 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999999999999999999999974
No 10
>cd02436 Nodulin-21 Nodulin-21. Nodulin-21: This is a family of proteins that may be unique to certain plants. The family member in soybean is found to be nodule-specific and is abundant during nodule development. The proteins of this family thus may play a role in symbiotic nitrogen fixation.
Probab=100.00 E-value=3.6e-38 Score=258.59 Aligned_cols=151 Identities=44% Similarity=0.602 Sum_probs=128.6
Q ss_pred hhHHHHHhhcCchHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccchhhhhhhhcc
Q 039724 28 QWIRAAILGANDGLLSTTSLMLGVGAAKEDRRSMVLSGLAGALAGACSMAVGEFVSVSTQRDIQKATTSTNCERVMKLDI 107 (251)
Q Consensus 28 ~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~d~~~a~~~~~~~~~~~~~~ 107 (251)
+|+|++|||+||||||++++++|+++++.|+.+|+++|+++++||++||++|||+|++||+|.+++.+
T Consensus 1 ~~lra~VlGanDGivs~~alv~Gvaga~~~~~~illaGla~lvAga~SMa~GeYvSv~sq~d~e~a~i------------ 68 (152)
T cd02436 1 QWLRAAVLGANDGLVSVASLMLGVGAVCADEHAMLLSGLAGLVAGACPMAIGEFVRVYRQYRRPRAAR------------ 68 (152)
T ss_pred CcHHHHHhhcchhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHhhcchhhcccccchHHHHH------------
Confidence 59999999999999999999999999999999999999999999999999999999999999999933
Q ss_pred ccHHhhhhhhcCCCCCCCCCcccchHHHHHHHcCCCCCcchhccccccccCCChHHHHHHHHHHHHHhhhhhhhhHHhhh
Q 039724 108 TSVKETKLHETEPKLPTIFSPGRSPMMKVVIEDAKTFPSSSELRDDLQEVLPNPFKAAAASALAFLCGSFVPLLPAILFA 187 (251)
Q Consensus 108 ~~e~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~~~~~~~~e~~~~~~~~~P~~sal~s~lsf~iggliPLlpy~~~~ 187 (251)
+++|++ + ++|++++. +.+..+++..|||++|++|+++|.+|+++||++++|+.
T Consensus 69 ----~~e~~e----l----------------~rGl~~~l---elgi~~~~~~~P~qAA~aSa~sF~~Ga~lPll~~~fl~ 121 (152)
T cd02436 69 ----CLRGRN----R----------------ARGPAPDS---EPEGLRRQAPSPSSAATASALSFAAGALFPLLAAWFVA 121 (152)
T ss_pred ----HHHHHH----h----------------hcCCChhh---hcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222211 1 33333322 23334566789999999999999999999999999666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 039724 188 RYIVRIVVIAIVTSLALVLFGGFGAHLGGSP 218 (251)
Q Consensus 188 ~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~ 218 (251)
+..++ ..+++++.++|+++|++.+++++.+
T Consensus 122 p~~~~-~~~~~~~~~aL~~~G~~~A~~g~a~ 151 (152)
T cd02436 122 SYASR-RVLPPQSSAPAAPPGRSPATVTASS 151 (152)
T ss_pred ccchh-hHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 66666 8889999999999999999999876
No 11
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=100.00 E-value=4.4e-35 Score=241.34 Aligned_cols=142 Identities=49% Similarity=0.733 Sum_probs=133.3
Q ss_pred HHHHHhhcCchHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccchhhhhhhhcccc
Q 039724 30 IRAAILGANDGLLSTTSLMLGVGAAKEDRRSMVLSGLAGALAGACSMAVGEFVSVSTQRDIQKATTSTNCERVMKLDITS 109 (251)
Q Consensus 30 lr~~V~G~~DGlvt~~alvaG~aga~~~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~d~~~a~~~~~~~~~~~~~~~~ 109 (251)
+|++|||+|||++|++++++|++++..|+++|+++|+++++|+++||++|||+|+|+|+|
T Consensus 1 ~r~~v~G~~DGivs~~~~v~G~~~a~~~~~~il~~Gl~~~ia~a~Sma~g~yls~~~e~~-------------------- 60 (143)
T cd01059 1 LRAAVLGANDGLVSTFALVAGVAAAGDSTKAILLAGLAGLVAGAISMAAGEYVSVKSQRD-------------------- 60 (143)
T ss_pred CccceecccchhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------------------
Confidence 589999999999999999999999999999999999999999999999999999977520
Q ss_pred HHhhhhhhcCCCCCCCCCcccchHHHHHHHcCCCCCcchhccccccccCCChHHHHHHHHHHHHHhhhhhhhhHHhhhhh
Q 039724 110 VKETKLHETEPKLPTIFSPGRSPMMKVVIEDAKTFPSSSELRDDLQEVLPNPFKAAAASALAFLCGSFVPLLPAILFARY 189 (251)
Q Consensus 110 e~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~~~~~~~~e~~~~~~~~~P~~sal~s~lsf~iggliPLlpy~~~~~~ 189 (251)
++|+++++||++|+++|++||++..+.
T Consensus 61 -----------------------------------------------------~~al~~~~s~~~g~lipllp~~~~~~~ 87 (143)
T cd01059 61 -----------------------------------------------------KAALASGLSFILGGLLPLLPYLLLPAG 87 (143)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 899999999999999999999887654
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 039724 190 IVRIVVIAIV-TSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGLLKPF 244 (251)
Q Consensus 190 ~~a~~~s~~~-t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~iG~l~ 244 (251)
..++..++++ +.++|+++|++|+|+++++|+++++||+.+|+++++++|++|+++
T Consensus 88 ~~a~~~si~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~~a~i~~~~g~l~ 143 (143)
T cd01059 88 SLALAVSVALVVALALFLLGAFVAKLGGAKKIRAALRMVVLGLLAAALTYLLGRLF 143 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6788899998 999999999999999999999999999999999999999999875
No 12
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=99.96 E-value=5.3e-28 Score=213.48 Aligned_cols=206 Identities=30% Similarity=0.421 Sum_probs=170.7
Q ss_pred hhhhhhhhhHHHHHhhcCchHHHHHHHHHHhhhcc-CChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccchh
Q 039724 21 KERIQRGQWIRAAILGANDGLLSTTSLMLGVGAAK-EDRRSMVLSGLAGALAGACSMAVGEFVSVSTQRDIQKATTSTNC 99 (251)
Q Consensus 21 ~~~~~~~~~lr~~V~G~~DGlvt~~alvaG~aga~-~~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~d~~~a~~~~~~ 99 (251)
.|..++.+|+|..++|.|||++++..++.|+.... .+...++..|+++.+.+++||..|+|+|+++|.|...+..+
T Consensus 3 ~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~al~mi~ge~~s~~~~~~~~~~~~~--- 79 (229)
T COG1814 3 KHYINRINIFRASVLGANDGLVSTAKLLEGVEAASIAAYLKLLIAGFAGLISGALSMIIGEYLSVSSQLDAELAEIQ--- 79 (229)
T ss_pred ccHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHHhhhhhhhH---
Confidence 45678899999999999999999999999999886 55677777779999999999999999999999998887331
Q ss_pred hhhhhhccccHHhhhhhhcCCCCCCCCCcccchHHHHHHHcCCCCCcc-----h-h----c------c-ccccccCCChH
Q 039724 100 ERVMKLDITSVKETKLHETEPKLPTIFSPGRSPMMKVVIEDAKTFPSS-----S-E----L------R-DDLQEVLPNPF 162 (251)
Q Consensus 100 ~~~~~~~~~~e~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~~~~~-----~-~----~------e-~~~~~~~~~P~ 162 (251)
+++. .....+.-+.+++..+|..+|.+.+.. . + . + ........+|+
T Consensus 80 ---------------~~~~--~~~~~~g~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 142 (229)
T COG1814 80 ---------------KERR--LLALSLGVADALVEILGALRGESEEEAREVAEQLLQGLIVGVHGRLSMGIGAYLSSRPL 142 (229)
T ss_pred ---------------HHHH--HHhcCcchhHHHHHHHHHHcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhH
Confidence 1111 123456677788888888888875421 0 0 0 0 01112225899
Q ss_pred HHH-HHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 039724 163 KAA-AASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGLL 241 (251)
Q Consensus 163 ~sa-l~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~iG 241 (251)
.++ ++++++|++|+++|++||++.++...++++|+++++++|+++|++++++++.+++++++|++..|++++.++|++|
T Consensus 143 ~~~~l~sg~s~~~G~l~Pllp~~~~~~~~~al~~si~~~~l~L~ilG~~~a~~s~~~~~~~~lr~v~~gl~aa~lt~~vg 222 (229)
T COG1814 143 LAATLSSGISFIIGALLPLLPFFFLPDVLSALIASIILALLALAILGAVLARLSGASIAKSILRMVLLGLLAALLTYLVG 222 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 7999999999999999999998877788999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q 039724 242 KPFDS 246 (251)
Q Consensus 242 ~l~~~ 246 (251)
++++.
T Consensus 223 ~l~~~ 227 (229)
T COG1814 223 RLFGI 227 (229)
T ss_pred HHHHh
Confidence 99874
No 13
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=96.36 E-value=0.059 Score=47.74 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=88.0
Q ss_pred hhhHHHHHhhcCchHHHHHHHHHHhhhccCChhHHH-HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhhccchhhhhhhh
Q 039724 27 GQWIRAAILGANDGLLSTTSLMLGVGAAKEDRRSMV-LSGLAGALAGACSMAVGEFVSVSTQRDIQKATTSTNCERVMKL 105 (251)
Q Consensus 27 ~~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~Vl-~aGla~liAgaiSMa~G~YlS~kse~d~~~a~~~~~~~~~~~~ 105 (251)
.++..+..+|.+||++..++...|......++.... ..++.....+..+|+++.|++.+ +..
T Consensus 81 ~~~~~~~~~g~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~-------------- 143 (229)
T COG1814 81 ERRLLALSLGVADALVEILGALRGESEEEAREVAEQLLQGLIVGVHGRLSMGIGAYLSSR---PLL-------------- 143 (229)
T ss_pred HHHHHhcCcchhHHHHHHHHHHcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh---hHH--------------
Confidence 456677777777777777777777777765554444 66777777777777777776510 000
Q ss_pred ccccHHhhhhhhcCCCCCCCCCcccchHHHHHHHcCCCCCcchhccccccccCCChHHHHHHHHHHHHHhhhhhhhhHHh
Q 039724 106 DITSVKETKLHETEPKLPTIFSPGRSPMMKVVIEDAKTFPSSSELRDDLQEVLPNPFKAAAASALAFLCGSFVPLLPAIL 185 (251)
Q Consensus 106 ~~~~e~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~~~~~~~~e~~~~~~~~~P~~sal~s~lsf~iggliPLlpy~~ 185 (251)
.. + +.++++.+++- +..++|.+..--
T Consensus 144 --------------------------------------------------~~--~-l~sg~s~~~G~-l~Pllp~~~~~~ 169 (229)
T COG1814 144 --------------------------------------------------AA--T-LSSGISFIIGA-LLPLLPFFFLPD 169 (229)
T ss_pred --------------------------------------------------HH--H-HHHHHHHHHHH-HHHHHHHHHHhh
Confidence 00 0 46666655554 334555544432
Q ss_pred hhh-hhHHHHHHHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 039724 186 FAR-YIVRIVVIAIVTSLALVLFGGFGAHLG-GSPIRVSAVRVLVGGWIAMGVTYGLLKPF 244 (251)
Q Consensus 186 ~~~-~~~a~~~s~~~t~~aL~~~G~~ka~~~-~~~~~~~~l~~l~~G~~aa~~~y~iG~l~ 244 (251)
... ....+..+++..++ +.+.....+... .....|..+.-+...+++.+++.++|..+
T Consensus 170 ~~~al~~si~~~~l~L~i-lG~~~a~~s~~~~~~~~lr~v~~gl~aa~lt~~vg~l~~~~~ 229 (229)
T COG1814 170 VLSALIASIILALLALAI-LGAVLARLSGASIAKSILRMVLLGLLAALLTYLVGRLFGIFL 229 (229)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 221 23445554444444 444444444444 45667878888888889999999888653
No 14
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=92.94 E-value=0.73 Score=38.98 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 039724 222 SAVRVLVGGWIAMGVTYGLLKPF 244 (251)
Q Consensus 222 ~~l~~l~~G~~aa~~~y~iG~l~ 244 (251)
.++-.+.+|++...+++.+.+++
T Consensus 142 ~~i~~~glGlll~~~~~~l~k~~ 164 (181)
T PF08006_consen 142 FGIGLFGLGLLLIVITFYLTKLF 164 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777766654
No 15
>COG4709 Predicted membrane protein [Function unknown]
Probab=86.03 E-value=10 Score=32.84 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHHHHHHHHHHH
Q 039724 195 VIAIVTSLALVLFGGFGAHLGGSP---IRVSAVRVLVGGWIAMGVTYGLL 241 (251)
Q Consensus 195 ~s~~~t~~aL~~~G~~ka~~~~~~---~~~~~l~~l~~G~~aa~~~y~iG 241 (251)
++++++..++++-|.+.+.+.+-- -.-+.+...++|+...+.+.+.|
T Consensus 115 lt~if~~~a~~~agil~g~~~~~e~~~~i~~~i~a~f~~IGs~lLgl~~~ 164 (195)
T COG4709 115 LTLIFSGWALVAAGILGGVILGVESLFLIGSSISAFFIGIGSLLLGLGLG 164 (195)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455544444444443321 12233334444444444444444
No 16
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=82.60 E-value=35 Score=30.38 Aligned_cols=81 Identities=9% Similarity=-0.067 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHh-hhhhhHHHHHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHHHHHHHHHHHHH
Q 039724 159 PNPFKAAAASALAFLCGSFVPLLPAIL-FARYIVRIVVIAIVTSLALVLF-GGFGAHLGGSPIRVSAVRVLVGGWIAMGV 236 (251)
Q Consensus 159 ~~P~~sal~s~lsf~iggliPLlpy~~-~~~~~~a~~~s~~~t~~aL~~~-G~~ka~~~~~~~~~~~l~~l~~G~~aa~~ 236 (251)
.+.+ ....+|+.+.+.-++|.+...- ......++.. .+++++.+..+ +.+...---....+..+--++.++++-++
T Consensus 152 ~aAl-~sflsF~ig~liPLLPf~~~~~~~~~~~~s~~~-~~~~L~~lG~~~a~~s~~~~~~~~l~~~~~G~~aa~vsy~i 229 (234)
T cd02433 152 SAAV-SSFLLFALGALIPVLPFLFGMSGLAALVLSVLL-VGLALLATGAVTGLLSGRSPGISALRQLAIGGGAAAVTYLL 229 (234)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 4566777777888888742100 0111222322 22333333333 44433333456677777777777788888
Q ss_pred HHHHH
Q 039724 237 TYGLL 241 (251)
Q Consensus 237 ~y~iG 241 (251)
++++|
T Consensus 230 G~l~~ 234 (234)
T cd02433 230 GLLFG 234 (234)
T ss_pred HHHcC
Confidence 87764
No 17
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=76.74 E-value=40 Score=28.90 Aligned_cols=30 Identities=37% Similarity=0.446 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhhh
Q 039724 159 PNPFKAAAASALAFLCGSFVPLLPAILFAR 188 (251)
Q Consensus 159 ~~P~~sal~s~lsf~iggliPLlpy~~~~~ 188 (251)
.|+++..++-.+.+.+..+-|.+|+++..+
T Consensus 104 ks~~~~~ia~~~~~~~~~~g~~~p~~~~~d 133 (189)
T TIGR02185 104 KNKRKVTIAYVLFFLLVAMGPILPIWLFKD 133 (189)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 466777776666666777888899887654
No 18
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=74.30 E-value=61 Score=28.55 Aligned_cols=23 Identities=4% Similarity=-0.142 Sum_probs=12.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHH
Q 039724 217 SPIRVSAVRVLVGGWIAMGVTYG 239 (251)
Q Consensus 217 ~~~~~~~l~~l~~G~~aa~~~y~ 239 (251)
.+..+..+--++.+.++-+++++
T Consensus 201 ~~~l~~~~~G~~aa~~ty~iG~l 223 (225)
T cd02434 201 ISGIIMLINGAASGGVSFFLGVL 223 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555555555544
No 19
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=74.11 E-value=58 Score=28.19 Aligned_cols=12 Identities=0% Similarity=0.030 Sum_probs=7.0
Q ss_pred cccchHHHHHHH
Q 039724 128 PGRSPMMKVVIE 139 (251)
Q Consensus 128 ~e~~el~~i~~~ 139 (251)
++.+++.+.+.+
T Consensus 97 ~~a~~i~~~l~~ 108 (213)
T PF01988_consen 97 EDAEEIAEELSK 108 (213)
T ss_pred HHHHHHHHHHHh
Confidence 445666666554
No 20
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=73.55 E-value=37 Score=28.58 Aligned_cols=74 Identities=18% Similarity=0.059 Sum_probs=47.2
Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHH
Q 039724 159 PNPFKAAAASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTY 238 (251)
Q Consensus 159 ~~P~~sal~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y 238 (251)
--||..++..+++-++..+.+.-+.+. +..+.+. -++.|++ .|-++..++....+.+..|++.+.++|
T Consensus 45 lGP~~g~~~a~i~~ll~~l~~~g~~~a-------fpg~~~~----a~laGli-yrk~~~~~~a~~ge~igt~iig~~~s~ 112 (160)
T TIGR02359 45 LGPWYALAVAFIIGLLRNTLGLGTVLA-------FPGGMPG----ALLAGLL-YRFGRKHYWASLGEILGTGIIGSLLAY 112 (160)
T ss_pred HchHHHHHHHHHHHHHHHHhCCCchHH-------HHHHHHH----HHHHHHH-HHHccccHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999998888865333221 2211111 1123333 355556667777788999999998888
Q ss_pred HHHhhh
Q 039724 239 GLLKPF 244 (251)
Q Consensus 239 ~iG~l~ 244 (251)
-+-.++
T Consensus 113 pi~~~~ 118 (160)
T TIGR02359 113 PVAAWL 118 (160)
T ss_pred HHHHHH
Confidence 877554
No 21
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=73.43 E-value=11 Score=26.18 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039724 196 IAIVTSLALVLFGGFGAHLGGSPI--RVSAVRVLVGGWIAMGVTYGLLKPFD 245 (251)
Q Consensus 196 s~~~t~~aL~~~G~~ka~~~~~~~--~~~~l~~l~~G~~aa~~~y~iG~l~~ 245 (251)
+++.+++...++||+.+.+++.++ ..+.+-.++.| .+.+.++.++.
T Consensus 6 t~fWs~il~~vvgyI~ssL~~~~~n~~~~~Ii~vi~~----i~~~~~~~~i~ 53 (57)
T PF11151_consen 6 TFFWSFILGEVVGYIGSSLTGVTYNFTTAAIIAVIFG----IIVANIIAVIP 53 (57)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH----HHHHHHHHHcC
Confidence 344444445788999999988854 34444444444 44444444443
No 22
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=58.24 E-value=1.1e+02 Score=25.64 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHHH
Q 039724 159 PNPFKAAAASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLG-GSPIRVSAVRVLVGGWIAMGVT 237 (251)
Q Consensus 159 ~~P~~sal~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~-~~~~~~~~l~~l~~G~~aa~~~ 237 (251)
.+|+++++..++ ..+..++|.++.-......+.+.. .+++++.+..+-...++-. ..+.+|...--++.+.++-.++
T Consensus 95 ~~al~sgls~~~-G~llPLlp~~~~~~~~a~~~si~~-~~~~L~~~G~~~~~~~~~~~~~~~~r~~~~g~la~~~t~~vg 172 (175)
T cd02437 95 PSGLIQGISTTL-GGLLPLLPFLPFDLWLAAGIAVAI-VLAILFILGLVIGKISKINVAISFVWAVGMVITGISLVFSVG 172 (175)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999996666 567778887643222222333433 3333344444433333332 3556666666666666666655
Q ss_pred HH
Q 039724 238 YG 239 (251)
Q Consensus 238 y~ 239 (251)
.+
T Consensus 173 ~l 174 (175)
T cd02437 173 KL 174 (175)
T ss_pred Hh
Confidence 43
No 23
>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane
Probab=53.69 E-value=46 Score=26.69 Aligned_cols=40 Identities=18% Similarity=0.074 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCChhHHHH-HHHHHHHHHHHHHHHHHhhhc
Q 039724 206 LFGGFGAHLGGSPIRVSAV-RVLVGGWIAMGVTYGLLKPFD 245 (251)
Q Consensus 206 ~~G~~ka~~~~~~~~~~~l-~~l~~G~~aa~~~y~iG~l~~ 245 (251)
..+.+..++.+.|++++|+ ++++...+...++|.+.+..+
T Consensus 37 ~~~ll~N~~~rRP~~~sGihr~ll~~t~g~~~Gy~~~k~~n 77 (117)
T PF06374_consen 37 CTALLDNAINRRPPLKSGIHRQLLLATIGWFIGYYITKYRN 77 (117)
T ss_pred HHHHHHHHHhcCCchhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788899998877 677777777788888877653
No 24
>PF11282 DUF3082: Protein of unknown function (DUF3082); InterPro: IPR021434 This family of proteins has no known function.
Probab=50.56 E-value=1.1e+02 Score=23.07 Aligned_cols=42 Identities=29% Similarity=0.252 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCh---------hHHHHHHHHHHHHHHHHHHHHH
Q 039724 199 VTSLALVLFGGFGAHLGGSPI---------RVSAVRVLVGGWIAMGVTYGLL 241 (251)
Q Consensus 199 ~t~~aL~~~G~~ka~~~~~~~---------~~~~l~~l~~G~~aa~~~y~iG 241 (251)
++.+...+...+...+..+|+ +-+.+|+++.|+ +..+|+..|
T Consensus 17 la~~ly~lt~~i~~~fa~~p~~s~~~~a~~Ia~~vRTlv~Gl-~~LaTfiF~ 67 (82)
T PF11282_consen 17 LAYGLYFLTTSIAASFASKPIHSSNYIAQNIASAVRTLVVGL-CYLATFIFG 67 (82)
T ss_pred HHHHHHHHHHHHHHHHccCCCCcccHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 333344444555566655543 346789999995 566666654
No 25
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=50.52 E-value=1.5e+02 Score=26.95 Aligned_cols=71 Identities=18% Similarity=0.062 Sum_probs=43.8
Q ss_pred HHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHHHHHHHHh
Q 039724 169 ALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSP-IRVSAVRVLVGGWIAMGVTYGLLK 242 (251)
Q Consensus 169 ~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~-~~~~~l~~l~~G~~aa~~~y~iG~ 242 (251)
+.+|++-.+--++.+....+..-.+.|+..-|++-|+++||+..++-..+ +|-.. +.++++...++|...+
T Consensus 12 ~~a~~lv~iai~is~~egl~lEk~il~a~~RtvvQLli~GfvL~yIf~~~~~~~~l---l~v~vm~~~Aa~~~~~ 83 (256)
T COG0390 12 GLAYLLVVVAILISHKEGLGLEKDILVASIRTVVQLLILGFVLSYIFALDNPALTL---LMVLVMLTIAAYNARK 83 (256)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHHHH
Confidence 34444444444455544333344567888889999999999999987654 55443 3444555556666554
No 26
>PRK10726 hypothetical protein; Provisional
Probab=50.48 E-value=1.2e+02 Score=23.77 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=39.5
Q ss_pred cccCCChHHHHHHHHHHHHHhhhhhhhhHH----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 039724 155 QEVLPNPFKAAAASALAFLCGSFVPLLPAI----LFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSA 223 (251)
Q Consensus 155 ~~~~~~P~~sal~s~lsf~iggliPLlpy~----~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~ 223 (251)
+++...++--|++-|++|.+.-.+|.+-|- |+.=+.+-|..+..=. -.+.|.....+.+....-+.
T Consensus 15 ~de~s~sl~Gav~GFv~ywlA~aiPfl~YG~nTlfF~LYTWPFFLALmPv---sVlvGi~l~~Ll~g~l~~s~ 84 (105)
T PRK10726 15 DEETTWSLPGAVVGFVSWLLALAIPFLIYGSNTLFFFLYTWPFFLALMPV---SVLVGIALHSLLRGKLLYSI 84 (105)
T ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHhccchhHHH
Confidence 444567788999999999999999999881 1111333333222211 12346666666666554443
No 27
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=50.31 E-value=1.8e+02 Score=26.20 Aligned_cols=46 Identities=11% Similarity=-0.055 Sum_probs=26.6
Q ss_pred hhhhhh-hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCC-CChh
Q 039724 175 GSFVPL-LPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGG-SPIR 220 (251)
Q Consensus 175 ggliPL-lpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~-~~~~ 220 (251)
.-++|+ +.|..-.+....+.++.+=+.+-|+++||+..++=+ .++|
T Consensus 12 lv~~~~~i~~~~~lgl~k~l~iA~~R~~vQL~~vG~vL~~iF~~~~~~ 59 (248)
T TIGR00245 12 FVIIAILLSYREKLGLEKDILWASIRAIIQLIIVGYVLLYIFSFDMPG 59 (248)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334444 444333334445667777777788888877776643 3354
No 28
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=50.23 E-value=81 Score=25.58 Aligned_cols=22 Identities=23% Similarity=0.251 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039724 192 RIVVIAIVTSLALVLFGGFGAH 213 (251)
Q Consensus 192 a~~~s~~~t~~aL~~~G~~ka~ 213 (251)
.+++-+++++++.+++||+-+.
T Consensus 80 s~v~Nilvsv~~~~~~~~~~~~ 101 (142)
T PF11712_consen 80 STVFNILVSVFAVFFAGWYWAG 101 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777775544
No 29
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=49.66 E-value=81 Score=25.81 Aligned_cols=21 Identities=10% Similarity=-0.080 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 039724 226 VLVGGWIAMGVTYGLLKPFDS 246 (251)
Q Consensus 226 ~l~~G~~aa~~~y~iG~l~~~ 246 (251)
++.=++++.++-|+++..+..
T Consensus 62 tiaD~~La~~~iW~~~~~~~~ 82 (136)
T PF10710_consen 62 TIADFGLAFLVIWLMGYILTG 82 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444444555555555555543
No 30
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=49.54 E-value=1.5e+02 Score=24.45 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHhhh-hhhhh-------HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 039724 161 PFKAAAASALAFLCGSF-VPLLP-------AILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWI 232 (251)
Q Consensus 161 P~~sal~s~lsf~iggl-iPLlp-------y~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~ 232 (251)
|....+++.+..++|.+ +|+.. |++. ++.-+++++.++. ++.|+++.+..+.. +..+.++..++
T Consensus 24 ~~~g~~s~~~YlllG~~GlPVFagg~gG~~~l~g--PTgGyl~gf~~~a---~i~g~~~~~~~~~~---~~~~~~~~~~~ 95 (148)
T PF02632_consen 24 PRRGFLSVLLYLLLGAIGLPVFAGGSGGLGYLLG--PTGGYLLGFPLAA---LIIGLLAERLKRSR---SFLRLILAMLV 95 (148)
T ss_pred hHHHHHHHHHHHHHHHHCCchhcCCCCchHHHhc--CCChHHHHHHHHH---HHHHHHHHhccccc---hHHHHHHHHHH
Confidence 44444444444444444 56654 2332 3334555555432 34566666655442 33344444455
Q ss_pred HHHHHHHHHhh
Q 039724 233 AMGVTYGLLKP 243 (251)
Q Consensus 233 aa~~~y~iG~l 243 (251)
+..+.|.+|..
T Consensus 96 g~~iiy~~G~~ 106 (148)
T PF02632_consen 96 GLLIIYIFGII 106 (148)
T ss_pred HHHHHHHhHHH
Confidence 55666776643
No 31
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=48.63 E-value=66 Score=27.70 Aligned_cols=143 Identities=13% Similarity=-0.029 Sum_probs=0.0
Q ss_pred CCChhhhhhhhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhhhccC--ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 039724 11 APDHENLGMMKERIQRGQWIRAAILGANDGLLSTTSLMLGVGAAKE--DRRSMVLSGLAGALAGACSMAVGEFVSVSTQR 88 (251)
Q Consensus 11 ~~h~~~~~~~~~~~~~~~~lr~~V~G~~DGlvt~~alvaG~aga~~--~~~~Vl~aGla~liAgaiSMa~G~YlS~kse~ 88 (251)
+++.+++.++.......+.-.....-..|+.+..+++.+.+.|... ++..--..|+..++..++.+|+.=|.-.+-=+
T Consensus 56 ~~~a~eli~~~~k~~~~~~~~~~~~~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 56 KEYADELIKPLPKPKKKNKNSNPWLMALDNSLLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred HHHHHHHhccccCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHhhccchhhhhhhhccccHHhhhhhhcCCCCCCCCCcccchHHHHHHHcCCCCCcchhccccccccCCChHHHHHHH
Q 039724 89 DIQKATTSTNCERVMKLDITSVKETKLHETEPKLPTIFSPGRSPMMKVVIEDAKTFPSSSELRDDLQEVLPNPFKAAAAS 168 (251)
Q Consensus 89 d~~~a~~~~~~~~~~~~~~~~e~E~~re~~e~~l~~~~~~e~~el~~i~~~~g~~~~~~~~~e~~~~~~~~~P~~sal~s 168 (251)
.. +. .....+-|+.-+.+
T Consensus 136 ~~-~~-------------------------------------------------------------~~~r~~~~k~~~~~ 153 (206)
T PF06570_consen 136 PY-KK-------------------------------------------------------------KKKRPSWWKYILIS 153 (206)
T ss_pred cc-cc-------------------------------------------------------------cccccHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhhHHhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHhC
Q 039724 169 ALAFLCGSFVPLLPAILFARYIVRI--VVIAIVTSLALVLFGGFGAHLG 215 (251)
Q Consensus 169 ~lsf~iggliPLlpy~~~~~~~~a~--~~s~~~t~~aL~~~G~~ka~~~ 215 (251)
.+++++.-++=.+..++.+..+..+ ++.+++.++++.+.=|++-|+.
T Consensus 154 ~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 154 VLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhC
No 32
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=46.54 E-value=90 Score=29.57 Aligned_cols=82 Identities=12% Similarity=0.184 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHHHHhhhhhhhh---H--HhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHhC-----CCChhHHHHH
Q 039724 159 PNPFKAAAASALAFLCGSFVPLLP---A--ILFARYIVRIVVIAIVTSLALVLF---GGFGAHLG-----GSPIRVSAVR 225 (251)
Q Consensus 159 ~~P~~sal~s~lsf~iggliPLlp---y--~~~~~~~~a~~~s~~~t~~aL~~~---G~~ka~~~-----~~~~~~~~l~ 225 (251)
.-.+-.++..+++-.+|.++|.+- + ++..+.....+.-++++++...+. |..|.+-. +.+..|+.+-
T Consensus 98 GvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~i 177 (344)
T PF06379_consen 98 GVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLII 177 (344)
T ss_pred hHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHH
Confidence 456788899999999999997762 1 121121122333344444444443 45554432 2357777778
Q ss_pred HHHHHHHHHHHHHHH
Q 039724 226 VLVGGWIAMGVTYGL 240 (251)
Q Consensus 226 ~l~~G~~aa~~~y~i 240 (251)
-++.|++++..+|++
T Consensus 178 Av~sGv~Sa~fn~g~ 192 (344)
T PF06379_consen 178 AVLSGVMSACFNFGL 192 (344)
T ss_pred HHHHHHHHHHHHHHH
Confidence 889999988888875
No 33
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=46.15 E-value=1.8e+02 Score=24.33 Aligned_cols=16 Identities=19% Similarity=0.112 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhhh
Q 039724 163 KAAAASALAFLCGSFV 178 (251)
Q Consensus 163 ~sal~s~lsf~iggli 178 (251)
..++...++..+.+++
T Consensus 79 ~~~i~~~i~l~~~~~~ 94 (181)
T PF08006_consen 79 LRAILAIIGLGLLSFI 94 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444544444433
No 34
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=45.58 E-value=2.2e+02 Score=25.37 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHHHHhhhhhhhh---HHhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHhCC-----CChhHHHHHHHHH
Q 039724 159 PNPFKAAAASALAFLCGSFVPLLP---AILFARYIVRIVVIAIVTSLALVLF-GGFGAHLGG-----SPIRVSAVRVLVG 229 (251)
Q Consensus 159 ~~P~~sal~s~lsf~iggliPLlp---y~~~~~~~~a~~~s~~~t~~aL~~~-G~~ka~~~~-----~~~~~~~l~~l~~ 229 (251)
.+.+.+++. |+-+.+.-++|.+- ... ...+.+. .++++++.+..+ +.+...-.. .+..+-.+--++.
T Consensus 155 ~aAl~s~ls-f~lG~liPLlPy~~~~~~~~--a~~~si~-l~~~aL~ilG~~~s~~s~~~~~~~~~~~s~lrml~~G~~a 230 (241)
T cd02435 155 ISALTIGLS-YFIGGLIPLLPYFFVSTVGE--ALLLSVI-VTLVALFVFGYVKTWFTGGWGGAGGGVWGAVQMLVVGGLA 230 (241)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHccchhH--HHHHHHH-HHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHH
Confidence 455555554 44444556666532 111 1222332 233344444444 333323222 3555655555555
Q ss_pred HHHHHHH
Q 039724 230 GWIAMGV 236 (251)
Q Consensus 230 G~~aa~~ 236 (251)
.+++.++
T Consensus 231 a~vty~l 237 (241)
T cd02435 231 AGAAWGL 237 (241)
T ss_pred HHHHHHH
Confidence 5555444
No 35
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=45.52 E-value=1.3e+02 Score=27.79 Aligned_cols=74 Identities=22% Similarity=0.203 Sum_probs=43.6
Q ss_pred HHHHHHHhhhhhhhhHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHhCCC---Chh----HHHHHHHHHHHHHHHHHHH
Q 039724 168 SALAFLCGSFVPLLPAILFARY-IVRIVVIAIVTSLALVLFGGFGAHLGGS---PIR----VSAVRVLVGGWIAMGVTYG 239 (251)
Q Consensus 168 s~lsf~iggliPLlpy~~~~~~-~~a~~~s~~~t~~aL~~~G~~ka~~~~~---~~~----~~~l~~l~~G~~aa~~~y~ 239 (251)
.+++++++.+.|..|+++.... ...-..+-..+-++|+++|+..++-... ++. ...+|+++.=++...+.|+
T Consensus 250 ~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~ 329 (385)
T PF03547_consen 250 IILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFL 329 (385)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666663221100 1111334445778899999887764322 221 3566888888888888887
Q ss_pred HH
Q 039724 240 LL 241 (251)
Q Consensus 240 iG 241 (251)
++
T Consensus 330 ~~ 331 (385)
T PF03547_consen 330 LG 331 (385)
T ss_pred HC
Confidence 76
No 36
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=45.08 E-value=24 Score=22.35 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC
Q 039724 194 VVIAIVTSLALVLFGGFGAHLGGSP 218 (251)
Q Consensus 194 ~~s~~~t~~aL~~~G~~ka~~~~~~ 218 (251)
..++++..+.||++|++..--++.|
T Consensus 8 Vy~vV~ffv~LFifGflsnDp~RnP 32 (36)
T PF02532_consen 8 VYTVVIFFVSLFIFGFLSNDPGRNP 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTSSS
T ss_pred ehhhHHHHHHHHhccccCCCCCCCC
Confidence 4566677788999999887665554
No 37
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=43.76 E-value=2.1e+02 Score=24.63 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=31.8
Q ss_pred CchHHHHHHHHHHhhhccCCh-hHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 039724 38 NDGLLSTTSLMLGVGAAKEDR-RSMVLSGLAGALAGACSMAVGEFVSVST 86 (251)
Q Consensus 38 ~DGlvt~~alvaG~aga~~~~-~~Vl~aGla~liAgaiSMa~G~YlS~ks 86 (251)
.|-++...|..++.. ..|. .+++.+-+++.+.|.++=.+|-|...+-
T Consensus 38 ge~iL~~~G~l~~~g--~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~ 85 (208)
T COG0586 38 GEVLLLLAGALAAQG--KLNLWLVILVATLGALLGDLISYWIGRRFGRKL 85 (208)
T ss_pred chHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH
Confidence 355555555555444 2343 6777777788999999999999987643
No 38
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=43.61 E-value=71 Score=27.67 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHH
Q 039724 192 RIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGL 240 (251)
Q Consensus 192 a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~i 240 (251)
.+.++.+.+.+++++|+++.+ +.+-.+.++++.+.++++|
T Consensus 136 s~~~~~~As~v~a~~fs~~~~---------t~igi~g~ail~a~v~s~I 175 (187)
T PF01024_consen 136 SLAAGGAASAVAAFAFSFILG---------TPIGILGIAILMAVVGSLI 175 (187)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHh
Confidence 345566667777777776666 3344444444555555554
No 39
>TIGR02002 PTS-II-BC-glcB PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998).
Probab=43.29 E-value=1.8e+02 Score=28.83 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC---CChh-----------HHHHHHHHHHHHHHHHHHHHHhhh------ccCCCCC
Q 039724 192 RIVVIAIVTSLALVLFGGFGAHLGG---SPIR-----------VSAVRVLVGGWIAMGVTYGLLKPF------DSEGRND 251 (251)
Q Consensus 192 a~~~s~~~t~~aL~~~G~~ka~~~~---~~~~-----------~~~l~~l~~G~~aa~~~y~iG~l~------~~~~~~~ 251 (251)
.+.+.++.+++.-.+.+.+..+.+- .+.. ....-..++|++-+.+-|.+-+++ .++||.|
T Consensus 334 lf~~h~i~~gi~~~i~~~~~v~~g~~f~~Glid~~~~~~~~~~~~~~~~~~igi~~~~vy~fvf~~~I~k~~l~TpGRe~ 413 (502)
T TIGR02002 334 LYVIHAILAGLSFPIMILLGVKIGTTFSGGAIDFILYGLLSNRSKAWLFIIVGIGYAIIYYFLFRFLIKKLNLKTPGRED 413 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCccHHHHHHhccCCccccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Confidence 3555666666666666666555411 1000 011334566666666655555544 5889975
No 40
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=41.94 E-value=1.3e+02 Score=24.65 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039724 197 AIVTSLALVLFGGFGAHLGGSP-IRVSAVRVLVGGWIAMGVTYGLLKPFDSEG 248 (251)
Q Consensus 197 ~~~t~~aL~~~G~~ka~~~~~~-~~~~~l~~l~~G~~aa~~~y~iG~l~~~~~ 248 (251)
..++++++.+.|.....=.+.+ +.|..+..++++.+..++++.+ .+|+.+|
T Consensus 54 ~~IavIaIivaG~~liFGg~~~gf~Rrl~~vVlg~~il~gAt~i~-~lFg~~G 105 (135)
T PRK13871 54 GFIALAAVAIAGAMLIFGGELNDFARRLCYVALVGGVLLGATQIV-ALFGATG 105 (135)
T ss_pred HHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHhhHHHH-HHHcccc
Confidence 3344444555553332212233 4488788887777777788887 5665544
No 41
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=41.61 E-value=22 Score=27.96 Aligned_cols=23 Identities=17% Similarity=-0.038 Sum_probs=16.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039724 216 GSPIRVSAVRVLVGGWIAMGVTYGLLKPFD 245 (251)
Q Consensus 216 ~~~~~~~~l~~l~~G~~aa~~~y~iG~l~~ 245 (251)
+.+||.+ +| ++|++++++|.|+.
T Consensus 80 ~e~PWq~------VG-vaAaVGlllGlLls 102 (104)
T COG4575 80 RENPWQG------VG-VAAAVGLLLGLLLS 102 (104)
T ss_pred HcCCchH------HH-HHHHHHHHHHHHHh
Confidence 4555566 45 56778888888875
No 42
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=41.09 E-value=2e+02 Score=24.62 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=5.3
Q ss_pred hhhhhhHHhh
Q 039724 177 FVPLLPAILF 186 (251)
Q Consensus 177 liPLlpy~~~ 186 (251)
++|++.|+..
T Consensus 7 ~~Pli~Ff~~ 16 (178)
T TIGR00997 7 LLPLIVFFAT 16 (178)
T ss_pred HHHHHHHHHH
Confidence 4566665443
No 43
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=40.93 E-value=2.2e+02 Score=23.89 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=9.8
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHh
Q 039724 69 ALAGACSMAVGEFVSVSTQRDIQKA 93 (251)
Q Consensus 69 liAgaiSMa~G~YlS~kse~d~~~a 93 (251)
.+++.++.+++--.+ |+-.+++
T Consensus 34 Gla~~vA~a~Sma~G---eYv~e~a 55 (169)
T TIGR00267 34 GLGGGVANGMSNAFG---AFTAERA 55 (169)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHH
Confidence 344445544443333 3444444
No 44
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=40.62 E-value=1.1e+02 Score=23.05 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhhhhhhHHhh
Q 039724 167 ASALAFLCGSFVPLLPAILF 186 (251)
Q Consensus 167 ~s~lsf~iggliPLlpy~~~ 186 (251)
.+.+.-++++++|++..+..
T Consensus 24 ~~i~~~~~~a~i~~l~~~~~ 43 (112)
T PF14015_consen 24 ASIILSVLGAVIPVLASLSG 43 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444447888998666543
No 45
>PRK10457 hypothetical protein; Provisional
Probab=40.06 E-value=1.3e+02 Score=22.39 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 039724 222 SAVRVLVGGWIAMGVTYGLLKPFD 245 (251)
Q Consensus 222 ~~l~~l~~G~~aa~~~y~iG~l~~ 245 (251)
+.+.++++|++.+.++.+++++++
T Consensus 28 G~~~tiilGiiGA~iGg~l~~~~g 51 (82)
T PRK10457 28 GFFMTIILGIVGAVVGGWISTFFG 51 (82)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444455544444444444443
No 46
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=39.99 E-value=1.5e+02 Score=22.06 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHH--------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 039724 162 FKAAAASALAFLCGSFVPLLPAI--------LFARYIVRIVVIAIVTSLALVLFGGFGAHLG 215 (251)
Q Consensus 162 ~~sal~s~lsf~iggliPLlpy~--------~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~ 215 (251)
+..++..|+-|.+=.+ ++||+ ++++..+++..-+++.++.+..+|.+.+.+-
T Consensus 11 l~~a~~vF~YYt~Wvl--llPFvd~d~~i~~~F~Pr~yAi~lP~~lll~~~~~vg~f~g~vm 70 (78)
T PF07297_consen 11 LAVALSVFTYYTIWVL--LLPFVDEDHPIHSFFPPREYAIILPIFLLLLGLSGVGTFLGYVM 70 (78)
T ss_pred HHHHHHHHHHHHHHHH--HhcccCCCchHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777654 44442 2234456666666666666777777776653
No 47
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=39.97 E-value=2.8e+02 Score=24.83 Aligned_cols=25 Identities=12% Similarity=-0.200 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh
Q 039724 219 IRVSAVRVLVGGWIAMGVTYGLLKP 243 (251)
Q Consensus 219 ~~~~~l~~l~~G~~aa~~~y~iG~l 243 (251)
..+...+.+.......++++.+|.+
T Consensus 253 ~~~~~~~~~~~~m~~g~~~~~~~~~ 277 (279)
T PRK09573 253 GASKASKYLKIIMILGLIAFLIGSL 277 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455556677777777788888765
No 48
>PRK10132 hypothetical protein; Provisional
Probab=39.72 E-value=28 Score=27.42 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=16.0
Q ss_pred CCChHHH-HHHHHHHHHHhhhh
Q 039724 158 LPNPFKA-AAASALAFLCGSFV 178 (251)
Q Consensus 158 ~~~P~~s-al~s~lsf~iggli 178 (251)
..|||++ |+..+++|++|.++
T Consensus 83 ~~~Pw~svgiaagvG~llG~Ll 104 (108)
T PRK10132 83 RERPWCSVGTAAAVGIFIGALL 104 (108)
T ss_pred HhCcHHHHHHHHHHHHHHHHHH
Confidence 3699976 67788888888764
No 49
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.53 E-value=3.2e+02 Score=26.36 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=37.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHhCCCChhHHHHH
Q 039724 156 EVLPNPFKAAAASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFG----AHLGGSPIRVSAVR 225 (251)
Q Consensus 156 ~~~~~P~~sal~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~k----a~~~~~~~~~~~l~ 225 (251)
.|...-|.++++.++.|+++|++-=.-.-++ .++..+.+..+..|.++|.++ +-+++.++.-+++-
T Consensus 294 pD~~rry~Aa~~agi~ylv~GlF~~~~~~l~----~alP~~li~~lAGLALlg~~~~~l~~A~~~~~~R~aAlv 363 (402)
T COG3135 294 PDPARRYTAALVAGIFYLLAGLFGGALVGLM----AALPASLIAALAGLALLGTLGNSLQAALKDEREREAALV 363 (402)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhh
Confidence 3445679999999999999998632211111 123344444444455555554 44455665544443
No 50
>COG4129 Predicted membrane protein [Function unknown]
Probab=39.35 E-value=2.7e+02 Score=26.15 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=28.5
Q ss_pred cCCChHHHHHHHHHHHHHhhhhhhhhHHhhhhhhHHH
Q 039724 157 VLPNPFKAAAASALAFLCGSFVPLLPAILFARYIVRI 193 (251)
Q Consensus 157 ~~~~P~~sal~s~lsf~iggliPLlpy~~~~~~~~a~ 193 (251)
...+-++.|+--.++.++|+++-.+-+.++.+..+.+
T Consensus 49 t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~~~ 85 (332)
T COG4129 49 TIKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIAF 85 (332)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3457789999999999999999998887765544444
No 51
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=38.61 E-value=1.4e+02 Score=28.43 Aligned_cols=30 Identities=10% Similarity=0.260 Sum_probs=24.9
Q ss_pred cCCChHHHHHHHHHHHHHhh--hhhhhhHHhh
Q 039724 157 VLPNPFKAAAASALAFLCGS--FVPLLPAILF 186 (251)
Q Consensus 157 ~~~~P~~sal~s~lsf~igg--liPLlpy~~~ 186 (251)
..-|||.+....++||.+-+ +.|++|++..
T Consensus 351 t~lsPy~~m~~lGLsysllAcslWP~va~~vp 382 (459)
T KOG4686|consen 351 TFLSPYTSMTFLGLSYSLLACSLWPCVASLVP 382 (459)
T ss_pred hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCC
Confidence 34699999999999998765 5899998654
No 52
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=38.33 E-value=3e+02 Score=26.49 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=37.5
Q ss_pred HhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039724 174 CGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIR--VSAVRVLVGGWIAMGVTYGLLKPFDSEG 248 (251)
Q Consensus 174 iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~--~~~l~~l~~G~~aa~~~y~iG~l~~~~~ 248 (251)
+.-++|++-..+ ++....+..+++.+.++|++ +.|.++. -+..-+++.-++++.++|.+.+.-+--|
T Consensus 165 ~~i~I~li~~g~-~~i~v~ii~~viit~~tL~~-------v~g~n~KTl~A~~~Ti~~~~ls~il~~~~i~~~~l~G 233 (385)
T COG5438 165 IIILIPLIINGF-NPILVFIILCVIITAITLFM-------VNGINKKTLAAFIGTILGTLLSIILAYISIYMTNLSG 233 (385)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHh-------hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 334455554432 23334445566666666664 3445543 3444566777777788887777655444
No 53
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=38.22 E-value=86 Score=31.22 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHHHHHhhhhhhhhHH
Q 039724 160 NPFKAAAASALAFLCGSFVPLLPAI 184 (251)
Q Consensus 160 ~P~~sal~s~lsf~iggliPLlpy~ 184 (251)
+-|+.|+++-+.--+..++..++-+
T Consensus 435 ~G~~rAf~tI~DsN~TTlia~~~L~ 459 (506)
T COG0342 435 AGFKRAFSTILDSNATTLIAAAILF 459 (506)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHH
Confidence 3466666666655555555555533
No 54
>COG1005 NuoH NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]
Probab=38.17 E-value=1.1e+02 Score=28.95 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhCCCCh-----hHHHHHHH----HHHHHHHHH
Q 039724 167 ASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFG-AHLGGSPI-----RVSAVRVL----VGGWIAMGV 236 (251)
Q Consensus 167 ~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~k-a~~~~~~~-----~~~~l~~l----~~G~~aa~~ 236 (251)
+...+|...+++|.-|.+.+.+.+..+...++ ..+|...|.+. ++-+|..+ .|++.+++ ..|+....+
T Consensus 90 ~~~~a~~~~avIP~~~~~~v~~invgll~~~a--~ssl~vygii~~GwaSNnKya~lGa~R~aaq~iSYEv~~~lsv~~v 167 (332)
T COG1005 90 ALIPAFLAFAVIPFGPEWVVANLNVGLLFILA--ISSLGVYGIILAGWASNNKYALLGALRAAAQMISYEVPLGLSVLAV 167 (332)
T ss_pred HHHHHHHHHeeecCCCceeecCCCcHHHHHHH--HHHHHHHHHHhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667788999988776665655554444 44666777555 55565554 45666654 445444444
Q ss_pred HHHHHh
Q 039724 237 TYGLLK 242 (251)
Q Consensus 237 ~y~iG~ 242 (251)
-...|.
T Consensus 168 v~~~GS 173 (332)
T COG1005 168 VMLAGS 173 (332)
T ss_pred HHHhCC
Confidence 444443
No 55
>PHA00094 VI minor coat protein
Probab=38.12 E-value=1.1e+02 Score=24.38 Aligned_cols=10 Identities=30% Similarity=0.517 Sum_probs=4.5
Q ss_pred HHHHHHHHhC
Q 039724 206 LFGGFGAHLG 215 (251)
Q Consensus 206 ~~G~~ka~~~ 215 (251)
++||+..+++
T Consensus 21 ~~gyfa~f~t 30 (112)
T PHA00094 21 LIGYFAKFFT 30 (112)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 56
>COG4709 Predicted membrane protein [Function unknown]
Probab=37.68 E-value=2.8e+02 Score=24.21 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 039724 166 AASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGF 210 (251)
Q Consensus 166 l~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ 210 (251)
+...++-.+...+-.||-++. ...++..|.+.++++++-|+.
T Consensus 82 ii~~~~L~~~~v~i~Lpl~~~---vi~~viailv~~lt~if~~~a 123 (195)
T COG4709 82 IIALIGLGLLAVIIGLPLLIG---VILFVIAILVAALTLIFSGWA 123 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443332 123445555555555555443
No 57
>PRK10404 hypothetical protein; Provisional
Probab=37.57 E-value=27 Score=27.09 Aligned_cols=22 Identities=14% Similarity=-0.062 Sum_probs=14.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039724 217 SPIRVSAVRVLVGGWIAMGVTYGLLKPFD 245 (251)
Q Consensus 217 ~~~~~~~l~~l~~G~~aa~~~y~iG~l~~ 245 (251)
.+||++ +| +++++++++|.|+.
T Consensus 78 e~Pw~a------vG-iaagvGlllG~Ll~ 99 (101)
T PRK10404 78 EKPWQG------IG-VGAAVGLVLGLLLA 99 (101)
T ss_pred hCcHHH------HH-HHHHHHHHHHHHHh
Confidence 355564 44 46678888887764
No 58
>PF11505 DUF3216: Protein of unknown function (DUF3216); InterPro: IPR023108 This domain is found in a family of proteins with unknown function and appears to be restricted to the Thermococcaceae. ; PDB: 2HJM_A.
Probab=37.41 E-value=24 Score=27.06 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=18.6
Q ss_pred hhhhhhhhHHHHHhhcCchHHHHHH
Q 039724 22 ERIQRGQWIRAAILGANDGLLSTTS 46 (251)
Q Consensus 22 ~~~~~~~~lr~~V~G~~DGlvt~~a 46 (251)
...+.-.+++..|||...|++|++-
T Consensus 34 EskrGe~Fi~vsIlGFlEGiLttLk 58 (97)
T PF11505_consen 34 ESKRGEEFIKVSILGFLEGILTTLK 58 (97)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHH
Confidence 3344556889999999999998864
No 59
>KOG4516 consensus NADH:ubiquinone oxidoreductase, NDUFC2/B14.5B subunit [Energy production and conversion]
Probab=37.40 E-value=1.3e+02 Score=23.94 Aligned_cols=37 Identities=14% Similarity=-0.074 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 039724 207 FGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGLLKP 243 (251)
Q Consensus 207 ~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~iG~l 243 (251)
-+++..+..+.|+..+..+.++.+.++.+++|.++..
T Consensus 40 s~~~~N~~~rkP~~~gi~~~ll~i~a~~~AGyy~~~~ 76 (118)
T KOG4516|consen 40 SAIFINWGFRKPVFSGIQKHLLFIAAGVGAGYYFDQK 76 (118)
T ss_pred HHHHHhhhhcCchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3567788888888887777887777788888887764
No 60
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=36.21 E-value=1.8e+02 Score=21.51 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=34.8
Q ss_pred HHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 039724 172 FLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGLLKPF 244 (251)
Q Consensus 172 f~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~iG~l~ 244 (251)
|++..++|-+=.+++.-....-....++|+ +|....++|++.. +||- +++-+....++|++.+-.
T Consensus 3 ~~~Al~~P~lLVvlFtrVT~n~~vg~~lt~-~Li~ASvykGyt~--~~~i-----i~iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 3 YLLALFFPCLLVVLFTRVTYNHYVGTILTV-ALIAASVYKGYTH--TWWI-----IFIDAVSLTAGFLYAKKM 67 (74)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHhcccc--chHH-----HHHHHHHHHHHHHHHHHH
Confidence 344555666555555555555555555553 3455556666543 4442 344455566666665543
No 61
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=35.94 E-value=2.6e+02 Score=23.32 Aligned_cols=16 Identities=25% Similarity=0.156 Sum_probs=9.8
Q ss_pred CCChHHHHHHHHHHHH
Q 039724 158 LPNPFKAAAASALAFL 173 (251)
Q Consensus 158 ~~~P~~sal~s~lsf~ 173 (251)
..+||...+..+++-.
T Consensus 100 ~y~~~~~~l~~~l~~~ 115 (193)
T PF06738_consen 100 RYPPWLVILAAGLASA 115 (193)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4577877666555543
No 62
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=35.41 E-value=3.6e+02 Score=25.99 Aligned_cols=69 Identities=22% Similarity=0.218 Sum_probs=38.2
Q ss_pred cCCChHHHHHHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHhCCCChhHHHHHHH
Q 039724 157 VLPNPFKAAAASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVL--FGGFGAHLGGSPIRVSAVRVL 227 (251)
Q Consensus 157 ~~~~P~~sal~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~--~G~~ka~~~~~~~~~~~l~~l 227 (251)
+...-|++|++.++.|+++|+.--.-.-++.-....+ .-.+++++|+- .+.+.+-+.+..+..+++-+.
T Consensus 280 dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~l--i~~lAGLALlg~l~~sl~~A~~~~~~r~aAlvtF 350 (378)
T PF03594_consen 280 DPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPAL--IAALAGLALLGTLGGSLQTAFSDEKYREAALVTF 350 (378)
T ss_pred CcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Confidence 4457799999999999999986433222221111112 12233344332 245556666666666665544
No 63
>KOG4783 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.06 E-value=2.2e+02 Score=22.19 Aligned_cols=61 Identities=13% Similarity=-0.032 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHH-hhhhhhhhHHhhhh-----------hhHHHHHHHHHHHHHHHHHHHHH--HHhCCCChhHH
Q 039724 162 FKAAAASALAFLC-GSFVPLLPAILFAR-----------YIVRIVVIAIVTSLALVLFGGFG--AHLGGSPIRVS 222 (251)
Q Consensus 162 ~~sal~s~lsf~i-ggliPLlpy~~~~~-----------~~~a~~~s~~~t~~aL~~~G~~k--a~~~~~~~~~~ 222 (251)
..+.+-+.++|.. --.+|+..||.... .+.-++.+++.++..-.++|.+. |+..+.+-+|+
T Consensus 24 ~~s~vktlLfy~~lii~vPiatfF~lK~fvleg~lgis~~da~iySaI~aVVavHvalglyiy~A~~~~sr~~ke 98 (102)
T KOG4783|consen 24 SVSIVKTLLFYCSLIIGVPIATFFALKFFVLEGYLGISEVDADIYSAICAVVAVHVALGLYIYRAIYAKSRTAKE 98 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 6677777777754 44578888864311 22333444444444456677544 66666666654
No 64
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=33.59 E-value=4.3e+02 Score=26.43 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=48.4
Q ss_pred cccCCChHHHHHHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCC---hh--HHHHHHHHH
Q 039724 155 QEVLPNPFKAAAASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSP---IR--VSAVRVLVG 229 (251)
Q Consensus 155 ~~~~~~P~~sal~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~---~~--~~~l~~l~~ 229 (251)
.++...|.+.++.+.+.=.+..+.+..++ .+...++..++..+.-+.+++-...-+....+ |. . .++.++.
T Consensus 382 r~d~ktP~~i~ii~~~~n~~l~~~l~~~~---~~~giala~s~a~~~~~~ll~~~l~k~~~~~~~~~~~~~~-~~k~~l~ 457 (518)
T COG0728 382 REDTKTPMKIAIISLVVNILLNLLLIPPL---GHVGLALATSLAAWVNALLLYYLLRKRLVYLPGRGWGLFL-ILKLLLA 457 (518)
T ss_pred ccCCCcChHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhHHH-HHHHHHH
Confidence 45667999999988888877775554444 22233444444332333333333333332222 22 2 4677777
Q ss_pred HHHHHHHHHHHHhhhc
Q 039724 230 GWIAMGVTYGLLKPFD 245 (251)
Q Consensus 230 G~~aa~~~y~iG~l~~ 245 (251)
..+++.+.|.+-...+
T Consensus 458 ~~i~~~~~~~~~~~~~ 473 (518)
T COG0728 458 SAIMAAALLALLHLAQ 473 (518)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777666553
No 65
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=33.29 E-value=2.7e+02 Score=23.55 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=5.9
Q ss_pred hhhhhhHHhh
Q 039724 177 FVPLLPAILF 186 (251)
Q Consensus 177 liPLlpy~~~ 186 (251)
++|++-|+..
T Consensus 7 ~~P~i~Ffv~ 16 (176)
T PF04279_consen 7 FGPLILFFVV 16 (176)
T ss_pred HHHHHHHHHH
Confidence 4566666544
No 66
>PRK00259 intracellular septation protein A; Reviewed
Probab=33.01 E-value=2.7e+02 Score=23.75 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=5.5
Q ss_pred hhhhhhHHhh
Q 039724 177 FVPLLPAILF 186 (251)
Q Consensus 177 liPLlpy~~~ 186 (251)
++|++-|+..
T Consensus 7 ~~P~i~Ffv~ 16 (179)
T PRK00259 7 FLPLILFFAA 16 (179)
T ss_pred HHHHHHHHHH
Confidence 4566665543
No 67
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=31.74 E-value=3.7e+02 Score=24.05 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 039724 221 VSAVRVLVGGWIAMGVTYGLLKPFDSEGRN 250 (251)
Q Consensus 221 ~~~l~~l~~G~~aa~~~y~iG~l~~~~~~~ 250 (251)
-+.+-+++.=+++..++++++++.+..|=+
T Consensus 78 ~A~~~tl~~~~~~~~l~~~~~~~~~~~G~~ 107 (244)
T PF07907_consen 78 AAFIGTLIGVLLAGILALLVMKLAHLQGFN 107 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344556666678888899999988876643
No 68
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=31.56 E-value=2.8e+02 Score=22.39 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.8
Q ss_pred CCChHHHHHHHHHHHHHhhhhhhhhH
Q 039724 158 LPNPFKAAAASALAFLCGSFVPLLPA 183 (251)
Q Consensus 158 ~~~P~~sal~s~lsf~iggliPLlpy 183 (251)
..+|-+-|...+++.++| ++|++++
T Consensus 16 ~~~p~~iA~g~AiG~fig-~~P~~g~ 40 (154)
T PF09835_consen 16 GGSPHSIALGFAIGVFIG-FLPIFGL 40 (154)
T ss_pred CCCHHHHHHHHHHHHHHH-HHhcchH
Confidence 368999999999999888 8888665
No 69
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=30.81 E-value=1.4e+02 Score=20.92 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHh---------CCCChhHHHHHHHHHHHHHHHHHH
Q 039724 196 IAIVTSLALVLFGGFGAHL---------GGSPIRVSAVRVLVGGWIAMGVTY 238 (251)
Q Consensus 196 s~~~t~~aL~~~G~~ka~~---------~~~~~~~~~l~~l~~G~~aa~~~y 238 (251)
..++.++.|+.+|+-.... ++.+.-| ..-.++.|.++.+++.
T Consensus 6 ~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~-t~~~ligG~va~ivGl 56 (59)
T PF11381_consen 6 ALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDK-TIWYLIGGAVAVIVGL 56 (59)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCch-hHHHHHhHHHHHHHHH
Confidence 3455667777777654333 4555544 4556677766666554
No 70
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=30.27 E-value=1.7e+02 Score=25.21 Aligned_cols=10 Identities=30% Similarity=0.368 Sum_probs=6.2
Q ss_pred hhhhhhHHhh
Q 039724 177 FVPLLPAILF 186 (251)
Q Consensus 177 liPLlpy~~~ 186 (251)
++|++.|++.
T Consensus 7 ~~Pli~FF~~ 16 (180)
T COG2917 7 FGPLILFFAA 16 (180)
T ss_pred HHHHHHHHHH
Confidence 5677776543
No 71
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=29.86 E-value=2.4e+02 Score=27.07 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=6.1
Q ss_pred HHHHHHHHHhCC
Q 039724 205 VLFGGFGAHLGG 216 (251)
Q Consensus 205 ~~~G~~ka~~~~ 216 (251)
.+.|.+..|++.
T Consensus 313 ~~~g~l~~r~g~ 324 (495)
T PRK14995 313 PIAGILVSRLGL 324 (495)
T ss_pred HHHHHHHHHcCc
Confidence 344555555543
No 72
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=29.14 E-value=49 Score=24.33 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=16.2
Q ss_pred HHHHHHhhhccCChhHHHHHHHHHHHHHHH
Q 039724 45 TSLMLGVGAAKEDRRSMVLSGLAGALAGAC 74 (251)
Q Consensus 45 ~alvaG~aga~~~~~~Vl~aGla~liAgai 74 (251)
+|++.=++|...+...+.++|+..++++++
T Consensus 51 ~gl~llv~G~~~~~~~~~v~G~~v~~~~~~ 80 (82)
T PF11239_consen 51 VGLALLVAGVVLSQPPLGVAGFVVMVAGAV 80 (82)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 333333333333344577788777777654
No 73
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=28.71 E-value=3.3e+02 Score=22.29 Aligned_cols=76 Identities=18% Similarity=0.093 Sum_probs=44.4
Q ss_pred CChHHHHHHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 039724 159 PNPFKAAAASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAM 234 (251)
Q Consensus 159 ~~P~~sal~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa 234 (251)
++++++..-..++..+|.-+=.-..--..........+.+++.+.-++++++..|+++-++..+.+-..=+|.-.+
T Consensus 45 P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~La~~PGGl~~m 120 (156)
T TIGR03082 45 PPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTAFLATSPGGASEM 120 (156)
T ss_pred CHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhCCchHHHH
Confidence 4566666666666666665443332222222223344455555666777899999999998777665555554333
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=28.34 E-value=3.8e+02 Score=23.14 Aligned_cols=26 Identities=8% Similarity=-0.129 Sum_probs=14.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039724 216 GSPIRVSAVRVLVGGWIAMGVTYGLLKPFD 245 (251)
Q Consensus 216 ~~~~~~~~l~~l~~G~~aa~~~y~iG~l~~ 245 (251)
+.+++|+ +++++++.+++.++|.++.
T Consensus 136 ~~~~~rA----~~~~~~~L~~G~~lGs~l~ 161 (194)
T PF11833_consen 136 ERKLGRA----FLWTLGGLVVGLILGSLLA 161 (194)
T ss_pred cchHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3444444 4455555566666666654
No 75
>PRK11469 hypothetical protein; Provisional
Probab=27.37 E-value=3.9e+02 Score=22.83 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=26.7
Q ss_pred HHHhhcCchHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhhhhhhhh
Q 039724 32 AAILGANDGLLSTTSLMLGVGAAKEDRRSMVLSGLAGALAGACSMAVGEFV 82 (251)
Q Consensus 32 ~~V~G~~DGlvt~~alvaG~aga~~~~~~Vl~aGla~liAgaiSMa~G~Yl 82 (251)
..++|..-++.+.+|...|-.-.. ++.-....+|..+-..+|-|.
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~------~i~~~~~~i~~~lL~~lG~~m 84 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASR------FVLEWNHWIAFVLLIFLGGRM 84 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 567777666666666666654432 122345666666666666664
No 76
>PRK15050 2-aminoethylphosphonate transport system permease PhnU; Provisional
Probab=27.32 E-value=4.2e+02 Score=23.61 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=13.0
Q ss_pred ChHHHHHHHHHHHHHhhhhhhhhH
Q 039724 160 NPFKAAAASALAFLCGSFVPLLPA 183 (251)
Q Consensus 160 ~P~~sal~s~lsf~iggliPLlpy 183 (251)
.||.-.....+.++++-++|++--
T Consensus 23 ~~~~~~~~~~~~~~~~~~~Pl~~~ 46 (296)
T PRK15050 23 RPLLWLLLPLLVLAPLVVYPLVRV 46 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 456544444444555666666554
No 77
>PF05628 Borrelia_P13: Borrelia membrane protein P13; InterPro: IPR008420 Lyme borreliosis (or Lyme's disease) is one of the most common tick-borne diseases. It is caused by bacteria from the genus Borrelia. This family consists of P13 proteins from Borrelia species. P13 is a 13 kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism [].
Probab=27.17 E-value=81 Score=25.93 Aligned_cols=48 Identities=15% Similarity=-0.014 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039724 198 IVTSLALVLFGGFGAHLGGS---PIRVSAVRVLVGGWIAMGVTYGLLKPFD 245 (251)
Q Consensus 198 ~~t~~aL~~~G~~ka~~~~~---~~~~~~l~~l~~G~~aa~~~y~iG~l~~ 245 (251)
-+....|+..|++....... +.+..+...+.+|.++++++|.....+.
T Consensus 44 ~~lg~~L~~tG~~~~~~~~~~~~~~~~~g~~l~~iG~~tm~~srI~slIiP 94 (135)
T PF05628_consen 44 DVLGGILILTGYIININANSKDDKMSITGSILMGIGGLTMAASRITSLIIP 94 (135)
T ss_pred HHHhHHHHHhhheeecccccccccccchhHHHHHHhHHHHHHHHHHHheec
Confidence 34455678888887553322 3356677778999999999999887654
No 78
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=27.04 E-value=3.4e+02 Score=22.00 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=7.1
Q ss_pred ChhHHHHHHHHHHHH
Q 039724 57 DRRSMVLSGLAGALA 71 (251)
Q Consensus 57 ~~~~Vl~aGla~liA 71 (251)
+.+.+...++-..+.
T Consensus 3 ~~k~i~~~ai~~Al~ 17 (169)
T PF07155_consen 3 STKKIVLIAILIALS 17 (169)
T ss_pred cHHHHHHHHHHHHHH
Confidence 345555555544333
No 79
>PRK10263 DNA translocase FtsK; Provisional
Probab=26.94 E-value=2.3e+02 Score=31.69 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHH
Q 039724 161 PFKAAAASALAFLCGSFVPLLPAI 184 (251)
Q Consensus 161 P~~sal~s~lsf~iggliPLlpy~ 184 (251)
++-+-+..++.+++|..--++|++
T Consensus 66 iVGA~LAD~L~~LFGl~AYLLP~L 89 (1355)
T PRK10263 66 MPGAWLADTLFFIFGVMAYTIPVI 89 (1355)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444555555566555555555543
No 80
>PRK11375 allantoin permease; Provisional
Probab=26.77 E-value=1.6e+02 Score=28.77 Aligned_cols=64 Identities=11% Similarity=-0.097 Sum_probs=46.0
Q ss_pred hhhhhhHHHHHhhcCchHH-HHHHHHHHhhhccCChhHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 039724 24 IQRGQWIRAAILGANDGLL-STTSLMLGVGAAKEDRRSMVLSGLAGALAGACSMAVGEFVSVSTQ 87 (251)
Q Consensus 24 ~~~~~~lr~~V~G~~DGlv-t~~alvaG~aga~~~~~~Vl~aGla~liAgaiSMa~G~YlS~kse 87 (251)
++..++..-+.+=..|++. +++.+..|+-+.+.+.+..+++-+.+-+-.++-|+.=.+.+.|.-
T Consensus 24 ~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~G 88 (484)
T PRK11375 24 QRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYG 88 (484)
T ss_pred ccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 3446677777776677764 444566666677788888888888777778888888888887653
No 81
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.39 E-value=57 Score=28.99 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=5.7
Q ss_pred CChHHHHHHHHH
Q 039724 159 PNPFKAAAASAL 170 (251)
Q Consensus 159 ~~P~~sal~s~l 170 (251)
..|+..++..+.
T Consensus 215 ~~~~~~al~~~~ 226 (262)
T PF14257_consen 215 GSRFRDALKNGW 226 (262)
T ss_pred chHHHHHHHHHH
Confidence 345555544443
No 82
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=26.20 E-value=3.3e+02 Score=21.49 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=40.1
Q ss_pred cccCCChHHHHHHHHHHHHHhhhhhhhhH-----HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 039724 155 QEVLPNPFKAAAASALAFLCGSFVPLLPA-----ILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAV 224 (251)
Q Consensus 155 ~~~~~~P~~sal~s~lsf~iggliPLlpy-----~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l 224 (251)
+++....+--|++-|++|.+.-.+|.+-| +|+ =+.+-|..+..=+ ..+.|.....+-+.+...+.+
T Consensus 18 ~de~t~sl~G~v~GF~~~wLAlaiPfl~YG~nTLfFf-LYTWPFFLALmPv---sVl~Gi~l~~ll~g~l~~s~~ 88 (107)
T PF12084_consen 18 DDEPTWSLPGGVVGFVFWWLALAIPFLVYGSNTLFFF-LYTWPFFLALMPV---SVLIGIALSSLLRGKLLWSLL 88 (107)
T ss_pred cCCCcccccchhHHHHHHHHHHhhHHhhhccchHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHcCCcEeeehh
Confidence 34456778889999999999999999887 222 1344443333221 224466666666666554433
No 83
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=25.96 E-value=3.2e+02 Score=21.33 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHHH
Q 039724 206 LFGGFGAHLGGSPIRVSAVRVLVGGWIAMGV 236 (251)
Q Consensus 206 ~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~ 236 (251)
++.++..++.+..|.|..++-++.|.++-.+
T Consensus 32 ~mA~LR~~Y~g~~~~~~llea~mCg~la~~~ 62 (107)
T TIGR01594 32 AIAYLRIRYMGGKFKRKLIDALMCAAIALVA 62 (107)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 3456677888888988888888888776444
No 84
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=25.50 E-value=5e+02 Score=25.10 Aligned_cols=81 Identities=19% Similarity=0.097 Sum_probs=47.2
Q ss_pred cCCChHHHHHHHHHHHHHhhhh-hhhhHHhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHhCCCChhHHHHHHH----
Q 039724 157 VLPNPFKAAAASALAFLCGSFV-PLLPAILFARYIVRIVVIAIVTSLALVLFG----GFGAHLGGSPIRVSAVRVL---- 227 (251)
Q Consensus 157 ~~~~P~~sal~s~lsf~iggli-PLlpy~~~~~~~~a~~~s~~~t~~aL~~~G----~~ka~~~~~~~~~~~l~~l---- 227 (251)
+...-|.+++..++.|++.|+. +.++.++.. +...++.++..|.++| .+.+-+.+.+...+++-+.
T Consensus 296 d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~-----~P~~li~~laGlAll~~~~~~l~~a~~~~~~r~~a~~tflvta 370 (395)
T TIGR00843 296 DKDKRWIAAAAAGIFYLLAGLFAGAITALFAA-----LPKELIAALAGLALLGAIAGNIKIALHEDQERDAALIAFLATA 370 (395)
T ss_pred CcCccchHHHHHHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 3567799999999999999999 877765532 2222222333333444 4445555556655555443
Q ss_pred ----HHHHHHHHHHHHHHh
Q 039724 228 ----VGGWIAMGVTYGLLK 242 (251)
Q Consensus 228 ----~~G~~aa~~~y~iG~ 242 (251)
+.|+.++.=+.++|.
T Consensus 371 Sg~~~~gigaafWgl~~G~ 389 (395)
T TIGR00843 371 SGLHFLGIGSAFWGLCAGG 389 (395)
T ss_pred hcCCcccccHHHHHHHHHH
Confidence 334455555555553
No 85
>PHA02753 hypothetical protein; Provisional
Probab=25.20 E-value=5e+02 Score=23.27 Aligned_cols=82 Identities=18% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHH
Q 039724 162 FKAAAASALAFLCGSFVPLLPAILFARYIVRI---VVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTY 238 (251)
Q Consensus 162 ~~sal~s~lsf~iggliPLlpy~~~~~~~~a~---~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y 238 (251)
+-.|+.+++.+.+|+.+-=+-+.+. .-+++ +.-+.+-+.+|.+ +|.+-..+....--+.+-.+=+.-..++|
T Consensus 191 F~~ALAl~lG~VVG~Aia~lL~~~~--~V~Af~GFIi~~~Llvaalvi---fkT~~kskdi~eiLlDl~aiFi~~~lvgy 265 (298)
T PHA02753 191 FGFALALGLGAVVGGAIAGLLFMAG--EVSAFAGFIINIGLLVAALVI---FKTFPKSKDIAEILLDLAAIFIFKFLVGY 265 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH---HhcCCCcchHHHHHHHHHHHHHHHHHhhc
Confidence 3456666666666666554444332 12222 2222222222222 34433333333333334444445678888
Q ss_pred HHHhhhccCC
Q 039724 239 GLLKPFDSEG 248 (251)
Q Consensus 239 ~iG~l~~~~~ 248 (251)
++|..+-..|
T Consensus 266 gi~~aL~aAG 275 (298)
T PHA02753 266 GIGPALWAAG 275 (298)
T ss_pred chHHHHHHhh
Confidence 8887765443
No 86
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=25.02 E-value=3.3e+02 Score=21.17 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHHHHHH
Q 039724 194 VVIAIVTSLALVLFGGFGAHLGGSP-IRVSAVRVLVGGWIAMGVTYG 239 (251)
Q Consensus 194 ~~s~~~t~~aL~~~G~~ka~~~~~~-~~~~~l~~l~~G~~aa~~~y~ 239 (251)
....+++.++.++=|++.+|-.+++ |..+.+--++.-++-.++++.
T Consensus 41 ~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~Gl~y~~il~lis~~ 87 (116)
T PF12670_consen 41 WLVVIIYILSVFIGGFYAGRKAGSKGWLHGLLVGLLYFLILLLISFL 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888887665 545544333333333333333
No 87
>PRK14231 camphor resistance protein CrcB; Provisional
Probab=24.62 E-value=3.7e+02 Score=21.55 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=25.3
Q ss_pred CCChhHHHH---HHHHHHHHHHHHHHHHHhhhccCCCC
Q 039724 216 GSPIRVSAV---RVLVGGWIAMGVTYGLLKPFDSEGRN 250 (251)
Q Consensus 216 ~~~~~~~~l---~~l~~G~~aa~~~y~iG~l~~~~~~~ 250 (251)
..+++.+.+ -.++.|++++.+++.+++.+....|+
T Consensus 89 ~~~~~~a~~y~~~s~~~gl~a~~lG~~l~~~~~~~~~~ 126 (129)
T PRK14231 89 SGAWLLAVSYVLASFIGGLIMVKFGRMLSNKLLNRGEH 126 (129)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455655544 46678999999999999887766554
No 88
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=24.41 E-value=3e+02 Score=20.35 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=19.5
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 039724 211 GAHLGGSPIRVSAVRVLVGGWIAMGVTYGLLK 242 (251)
Q Consensus 211 ka~~~~~~~~~~~l~~l~~G~~aa~~~y~iG~ 242 (251)
....++.+ |+..+..++.+.+...++..+++
T Consensus 68 ~~~~g~~~-~~~~~~~v~G~~iv~~A~~iv~~ 98 (99)
T PF04956_consen 68 MMMFGRQS-WRWFIGVVIGIIIVFGAPSIVSW 98 (99)
T ss_pred HHHhCCcC-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555 67777777777666666665543
No 89
>PRK08319 cobalt transport protein CbiM; Validated
Probab=24.39 E-value=4.8e+02 Score=22.82 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=18.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039724 215 GGSPIRVSAVRVLVGGWIAMGVTYGLLKPFDS 246 (251)
Q Consensus 215 ~~~~~~~~~l~~l~~G~~aa~~~y~iG~l~~~ 246 (251)
+..++.-=++..+..|+..+.++|++-+++..
T Consensus 101 g~Ggl~~lG~N~l~m~~~~~~~~y~~~~~~~~ 132 (224)
T PRK08319 101 AHGGLTTLGANVFSMAIVGPFVGYLVYKLLRK 132 (224)
T ss_pred cCCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 44555555555556666666666666555543
No 90
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=24.38 E-value=5.5e+02 Score=26.01 Aligned_cols=12 Identities=42% Similarity=0.636 Sum_probs=10.1
Q ss_pred HHhhhhhhhhhh
Q 039724 73 ACSMAVGEFVSV 84 (251)
Q Consensus 73 aiSMa~G~YlS~ 84 (251)
++||.+|+|+.-
T Consensus 239 Gls~~lGAFlAG 250 (621)
T PRK03562 239 GLSMALGAFLAG 250 (621)
T ss_pred CccHHHHHHHHH
Confidence 678999999876
No 91
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=24.23 E-value=5.3e+02 Score=23.18 Aligned_cols=76 Identities=9% Similarity=0.013 Sum_probs=37.7
Q ss_pred cccCCChHHHHHHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 039724 155 QEVLPNPFKAAAASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWIAM 234 (251)
Q Consensus 155 ~~~~~~P~~sal~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~aa 234 (251)
.....+||-..+..+++-..+ .+ ++. +.+..+..+++.+ ...+.+..+.+|....++.-..+--++.++++.
T Consensus 119 ~~~~y~~~l~~~~~g~~~~~f-----~~-l~g-G~w~d~~iaf~~~-~~~~~~~~~l~r~~~~~~~~~~~a~~~~~~~a~ 190 (250)
T COG2966 119 QPLRYSRWLVLLMAGLAAAAF-----AL-LFG-GGWLDFLIAFFAG-LLGFLLRQYLSRKGNPDFFFEVLASFIASIVAV 190 (250)
T ss_pred CccccccHHHHHHHHHHHHHH-----HH-HcC-CchHHHHHHHHHH-HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 344568887766555543221 12 232 3344444444443 334445555556666666555554455555544
Q ss_pred HHHH
Q 039724 235 GVTY 238 (251)
Q Consensus 235 ~~~y 238 (251)
+..+
T Consensus 191 ~~~~ 194 (250)
T COG2966 191 LFGS 194 (250)
T ss_pred HHHH
Confidence 4444
No 92
>CHL00024 psbI photosystem II protein I
Probab=24.16 E-value=23 Score=22.41 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Q 039724 195 VIAIVTSLALVLFGGFGAHLGGSP 218 (251)
Q Consensus 195 ~s~~~t~~aL~~~G~~ka~~~~~~ 218 (251)
.++++-.++||++|++..--++.|
T Consensus 9 y~vV~ffvsLFifGFlsnDp~RnP 32 (36)
T CHL00024 9 YTVVIFFVSLFIFGFLSNDPGRNP 32 (36)
T ss_pred hhHHHHHHHHHHccccCCCCCCCC
Confidence 455666778999998876555443
No 93
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=24.00 E-value=2.3e+02 Score=24.43 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=27.6
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039724 212 AHLGGSPIRVSAVRVLVGGWIAMGVTYGLLKPFD 245 (251)
Q Consensus 212 a~~~~~~~~~~~l~~l~~G~~aa~~~y~iG~l~~ 245 (251)
+..+..+++-..+-..+.+.+...+.|.+|+.++
T Consensus 49 ~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G 82 (208)
T COG0586 49 AAQGKLNLWLVILVATLGALLGDLISYWIGRRFG 82 (208)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344778888888888888889999999999886
No 94
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.85 E-value=5.4e+02 Score=23.17 Aligned_cols=55 Identities=13% Similarity=-0.017 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHHHHHHHHhhh
Q 039724 190 IVRIVVIAIVTSLALVLFGGFGAHLGGSPI-RVSAVRVLVGGWIAMGVTYGLLKPF 244 (251)
Q Consensus 190 ~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~-~~~~l~~l~~G~~aa~~~y~iG~l~ 244 (251)
..+++.+++..++.+.+=-++.+...+..+ ++-....+.=.++|.++++++...+
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvliaivIs~pl 101 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVLIAIVISEPL 101 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445544444444444455555555444 3333344444455666666666544
No 95
>PRK13499 rhamnose-proton symporter; Provisional
Probab=23.76 E-value=6e+02 Score=24.04 Aligned_cols=22 Identities=5% Similarity=0.279 Sum_probs=13.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHH
Q 039724 218 PIRVSAVRVLVGGWIAMGVTYG 239 (251)
Q Consensus 218 ~~~~~~l~~l~~G~~aa~~~y~ 239 (251)
+..|+.+--++.|++-+...++
T Consensus 171 ~~~KGi~ialisgi~~~~f~~~ 192 (345)
T PRK13499 171 NLKKGLILAVMSGIFSACFSFA 192 (345)
T ss_pred chHhHHHHHHHHHHHHHHHHHH
Confidence 4566666666677665555543
No 96
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=23.29 E-value=2.5e+02 Score=21.04 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=8.9
Q ss_pred HhhhhhhhhHHhh
Q 039724 174 CGSFVPLLPAILF 186 (251)
Q Consensus 174 iggliPLlpy~~~ 186 (251)
=|+.-|++|.+.-
T Consensus 8 RFayTplLP~M~~ 20 (85)
T PF06779_consen 8 RFAYTPLLPLMQA 20 (85)
T ss_pred HHHHHhHhHHHHH
Confidence 3566788888653
No 97
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=23.29 E-value=2e+02 Score=26.82 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=34.3
Q ss_pred hHHHHHhhcCchHHHHHHHHHHhhhccCC---hhHHHHHHHHHHHHHHH---hhhhhhhhhhhh
Q 039724 29 WIRAAILGANDGLLSTTSLMLGVGAAKED---RRSMVLSGLAGALAGAC---SMAVGEFVSVST 86 (251)
Q Consensus 29 ~lr~~V~G~~DGlvt~~alvaG~aga~~~---~~~Vl~aGla~liAgai---SMa~G~YlS~ks 86 (251)
.-.+-|-|+.=|+++..-.+.|++-++.. +..+-.+|++-+.|+++ +-.+.+++..++
T Consensus 95 ~tisnvv~ss~g~vsGilsIlGLaLAPvT~G~SL~LsaaG~GlgaaagvT~i~t~I~e~~~~~~ 158 (313)
T PF05461_consen 95 CTISNVVGSSTGAVSGILSILGLALAPVTAGGSLALSAAGIGLGAAAGVTSISTSIVEHVSNKS 158 (313)
T ss_pred hHHHHHHhhhHHHHhhHHHHHhHHhccccccchHHHHHhhhHHHHHhhhhHHHHHHHHHHHhHH
Confidence 33455666666666666666776655322 35566677766666653 444566666544
No 98
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=22.78 E-value=5.6e+02 Score=22.98 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 039724 190 IVRIVVIAIVTSLALVLFGGFGAHLGG 216 (251)
Q Consensus 190 ~~a~~~s~~~t~~aL~~~G~~ka~~~~ 216 (251)
...+.++.+=+.+-|+++|++..++-+
T Consensus 34 ~~~l~~a~~R~~vQL~~vG~vL~~if~ 60 (250)
T PF03649_consen 34 ERDLLIASLRMVVQLLLVGYVLHYIFK 60 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334566666666666677766665543
No 99
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present.
Probab=22.77 E-value=3.7e+02 Score=23.52 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=4.1
Q ss_pred HhhhhhhhhH
Q 039724 174 CGSFVPLLPA 183 (251)
Q Consensus 174 iggliPLlpy 183 (251)
+.-++|++..
T Consensus 18 ~~~~~P~~~~ 27 (265)
T TIGR02139 18 LIVLLPLAAL 27 (265)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 100
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=22.62 E-value=5.2e+02 Score=22.58 Aligned_cols=18 Identities=22% Similarity=0.039 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 039724 164 AAAASALAFLCGSFVPLL 181 (251)
Q Consensus 164 sal~s~lsf~iggliPLl 181 (251)
....+|+-+.+.-++|.+
T Consensus 142 ~s~~sf~lg~liPllpy~ 159 (218)
T cd02432 142 ASAISFSVGALLPLLAIL 159 (218)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555566666653
No 101
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=22.37 E-value=3.4e+02 Score=20.30 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhh
Q 039724 58 RRSMVLSGLAGALAGACSMAVGEFVSV 84 (251)
Q Consensus 58 ~~~Vl~aGla~liAgaiSMa~G~YlS~ 84 (251)
...++++.++..+++.++-.+|.+...
T Consensus 17 ~~~~~~~~~g~~~g~~~~y~lgr~~~~ 43 (123)
T PF09335_consen 17 WLGFLIATLGAVLGSLLAYLLGRYFGR 43 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 356777777888888888888888774
No 102
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=22.34 E-value=5.3e+02 Score=22.54 Aligned_cols=29 Identities=10% Similarity=-0.141 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039724 220 RVSAVRVLVGGWIAMGVTYGLLKPFDSEG 248 (251)
Q Consensus 220 ~~~~l~~l~~G~~aa~~~y~iG~l~~~~~ 248 (251)
.|..+-.+++=+.+-.+++.+++.....|
T Consensus 68 lklLLiIvFllLTaPVaSHaIARAAyr~G 96 (197)
T PRK12585 68 ARVLLAVLFIFLTTPVASHLINRAAYDTG 96 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45555556666667778888888766554
No 103
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=22.25 E-value=4.1e+02 Score=21.21 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhCCC
Q 039724 204 LVLFGGFGAHLGGS 217 (251)
Q Consensus 204 L~~~G~~ka~~~~~ 217 (251)
+++-|-..+++.+.
T Consensus 66 v~~gg~~l~rlKRG 79 (121)
T PF11990_consen 66 VFVGGKLLARLKRG 79 (121)
T ss_pred HHHhHHHHHHHHcC
Confidence 44446666777544
No 104
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=22.22 E-value=6e+02 Score=24.80 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=7.9
Q ss_pred CChhHHHHHHHHHHHH
Q 039724 217 SPIRVSAVRVLVGGWI 232 (251)
Q Consensus 217 ~~~~~~~l~~l~~G~~ 232 (251)
.+.++.....++.|++
T Consensus 213 ~~~~~~~~~~Il~gil 228 (483)
T TIGR03766 213 TDLRKKIALSILLGVL 228 (483)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 4444444445555543
No 105
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.19 E-value=5.8e+02 Score=25.41 Aligned_cols=68 Identities=24% Similarity=0.282 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHH-HHHHHHHHHHHHH-HHhCCCChhHHHHHHHHHHH
Q 039724 163 KAAAASALAFLCGSFVPLLPAILFARYIVRIVVIAI-VTSLALVLFGGFG-AHLGGSPIRVSAVRVLVGGW 231 (251)
Q Consensus 163 ~sal~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~-~t~~aL~~~G~~k-a~~~~~~~~~~~l~~l~~G~ 231 (251)
++=-.++++-++||++--+...|+.+....+...+. .=-++|.++|... +-.+++|..|+-. +..+|+
T Consensus 108 ~ALa~Aa~~Sf~gg~vs~~~l~~~Ap~la~~AL~FGpaEYFal~vfgl~~~~~~~~~s~lK~l~-~~~lGl 177 (504)
T COG3333 108 VALAIAAIASFIGGLVSTLGLLFLAPPLAKLALKFGPAEYFALMVFGLVSVAGLSGGSLLKGLA-SAALGL 177 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcHHHHHH-HHHHHH
Confidence 333345666678888887777666554333333332 1123444455333 4455667777633 333443
No 106
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=22.00 E-value=5.9e+02 Score=22.94 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=19.0
Q ss_pred Ch-HHHHHHHHHHHHHhhhhhhhhH
Q 039724 160 NP-FKAAAASALAFLCGSFVPLLPA 183 (251)
Q Consensus 160 ~P-~~sal~s~lsf~iggliPLlpy 183 (251)
.| +-+++++.++|....+-|+-|+
T Consensus 249 ~~i~~s~ltt~~gf~~L~~s~~~~~ 273 (333)
T PF03176_consen 249 RAILLSALTTAIGFGSLLFSPFPPL 273 (333)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHH
Confidence 44 7899999999988877776665
No 107
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=21.98 E-value=3.3e+02 Score=20.02 Aligned_cols=28 Identities=18% Similarity=0.066 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 039724 189 YIVRIVVIAIVTSLALVLFGGFGAHLGG 216 (251)
Q Consensus 189 ~~~a~~~s~~~t~~aL~~~G~~ka~~~~ 216 (251)
-.+++.+-++...+.|+++|.+.+.+.=
T Consensus 46 r~yAi~iPvaagl~ll~lig~Fis~vMl 73 (81)
T KOG3488|consen 46 REYAITIPVAAGLFLLCLIGTFISLVML 73 (81)
T ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666777778888988887753
No 108
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.75 E-value=4.4e+02 Score=21.90 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 039724 202 LALVLFGGFG 211 (251)
Q Consensus 202 ~aL~~~G~~k 211 (251)
+.|+..|+..
T Consensus 50 ~vL~~~g~~~ 59 (191)
T PF04156_consen 50 VVLLSLGLLC 59 (191)
T ss_pred HHHHHHHHHH
Confidence 4445555433
No 109
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=21.62 E-value=4.3e+02 Score=21.24 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=11.6
Q ss_pred CChHHHHHHHHHHHHHhhhh
Q 039724 159 PNPFKAAAASALAFLCGSFV 178 (251)
Q Consensus 159 ~~P~~sal~s~lsf~iggli 178 (251)
--|+..++..+++-+++.++
T Consensus 42 ~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 42 LGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35777776666655555554
No 110
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=21.57 E-value=4.4e+02 Score=28.46 Aligned_cols=24 Identities=21% Similarity=0.384 Sum_probs=19.8
Q ss_pred CChHHHHHHHHHHHHHhhhhhhhh
Q 039724 159 PNPFKAAAASALAFLCGSFVPLLP 182 (251)
Q Consensus 159 ~~P~~sal~s~lsf~iggliPLlp 182 (251)
.|-+-.++...+||+.++++|+=.
T Consensus 515 ~Svl~tsinni~aF~~aallPIPA 538 (1143)
T KOG1935|consen 515 MSVLLTSINNILAFLMAALLPIPA 538 (1143)
T ss_pred cchhHHHhhhHHHHHHHhhcCcHH
Confidence 466778889999999999999633
No 111
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=21.45 E-value=5.8e+02 Score=22.64 Aligned_cols=56 Identities=14% Similarity=-0.038 Sum_probs=24.7
Q ss_pred hhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHHH
Q 039724 178 VPLLPAILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSP--IRVSAVRVLVGGWIAM 234 (251)
Q Consensus 178 iPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~--~~~~~l~~l~~G~~aa 234 (251)
-|++++....+....+..+++.|.+..+..+.+ ++.++.+ ..++.+-+.++|++.+
T Consensus 102 ~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~-g~~tk~Dls~l~~~l~~aligLiia 159 (233)
T COG0670 102 SPILLVYAAISGGDAIAAAFGITALVFGALSLY-GYTTKRDLSSLGSFLFMALIGLIIA 159 (233)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 355554433222223344444444433333332 3344443 4556666666665544
No 112
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=21.44 E-value=1.6e+02 Score=28.39 Aligned_cols=46 Identities=26% Similarity=0.207 Sum_probs=36.8
Q ss_pred hhhhhhhhHHHHHhhcCchHHHHH-HHHHHhhhccCChhHHHHHHHH
Q 039724 22 ERIQRGQWIRAAILGANDGLLSTT-SLMLGVGAAKEDRRSMVLSGLA 67 (251)
Q Consensus 22 ~~~~~~~~lr~~V~G~~DGlvt~~-alvaG~aga~~~~~~Vl~aGla 67 (251)
|++...+|.-.++.|..-.++-.| +.+.++..+--...+..++|+|
T Consensus 294 h~d~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlA 340 (395)
T TIGR00843 294 HEDKDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLA 340 (395)
T ss_pred ccCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 445667799999999999999888 7777777776566778888887
No 113
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.42 E-value=3.5e+02 Score=21.39 Aligned_cols=10 Identities=30% Similarity=0.152 Sum_probs=5.0
Q ss_pred CChHHHHHHH
Q 039724 159 PNPFKAAAAS 168 (251)
Q Consensus 159 ~~P~~sal~s 168 (251)
.+.+++++..
T Consensus 65 ~~~~~aa~l~ 74 (135)
T PF04246_consen 65 SSLLKAAFLV 74 (135)
T ss_pred chHHHHHHHH
Confidence 3556655433
No 114
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=21.38 E-value=4.8e+02 Score=21.71 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=17.9
Q ss_pred cCCChHHHHHHHHHHHHHhhhhhhhhH
Q 039724 157 VLPNPFKAAAASALAFLCGSFVPLLPA 183 (251)
Q Consensus 157 ~~~~P~~sal~s~lsf~iggliPLlpy 183 (251)
...+|.+-|...+++.++ |+.|+.++
T Consensus 12 ~~~tP~~iA~g~a~Gvf~-g~~P~~gl 37 (154)
T TIGR03546 12 SNTSPAQLALAVALGMIL-GLTPFLNL 37 (154)
T ss_pred CCCCHHHHHHHHHHHHHH-HhccchhH
Confidence 346899998888877754 45566554
No 115
>PF14927 Neurensin: Neurensin
Probab=21.19 E-value=1.6e+02 Score=24.25 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhh
Q 039724 161 PFKAAAASALAFLCGSFVPLLPAILF 186 (251)
Q Consensus 161 P~~sal~s~lsf~iggliPLlpy~~~ 186 (251)
=||-++..++-|++.|+.-|+.-+.+
T Consensus 43 ~wkV~~i~g~l~Ll~Gi~~l~vgY~v 68 (140)
T PF14927_consen 43 CWKVGFISGLLLLLLGIVALTVGYLV 68 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 37889999999999998887765444
No 116
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=21.07 E-value=4.1e+02 Score=20.79 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCChhHHHHHHH----HHHHHHH
Q 039724 205 VLFGGFGAHLGGSPIRVSAVRVL----VGGWIAM 234 (251)
Q Consensus 205 ~~~G~~ka~~~~~~~~~~~l~~l----~~G~~aa 234 (251)
.++|.+.+.++++||.+...+.. +.+++||
T Consensus 18 sliGglga~l~~~pPl~~m~~lA~~lKIWAivaA 51 (102)
T PF14034_consen 18 SLIGGLGAFLTGQPPLKTMLDLANDLKIWAIVAA 51 (102)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhHHHHHHHH
Confidence 45677888888888887765532 5555444
No 117
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=20.86 E-value=1.4e+02 Score=21.09 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=9.7
Q ss_pred HHHHHHhhhhhhhhh
Q 039724 69 ALAGACSMAVGEFVS 83 (251)
Q Consensus 69 liAgaiSMa~G~YlS 83 (251)
++...+|+++|.+++
T Consensus 43 ~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 43 VALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344567777777664
No 118
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=20.59 E-value=3.8e+02 Score=24.28 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=11.7
Q ss_pred HHHHHhhhhhhhhHHhh
Q 039724 170 LAFLCGSFVPLLPAILF 186 (251)
Q Consensus 170 lsf~iggliPLlpy~~~ 186 (251)
-+|++|-++.-+|+++-
T Consensus 87 ~~fF~GLIlgSip~l~k 103 (257)
T PF04018_consen 87 YSFFFGLILGSIPFLYK 103 (257)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667777777777654
No 119
>COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
Probab=20.52 E-value=3.6e+02 Score=23.37 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=17.4
Q ss_pred HHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHH
Q 039724 170 LAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVL 206 (251)
Q Consensus 170 lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~ 206 (251)
.|-+.+-++|-+|+-+..+ .+.+..+.++..+.+|.
T Consensus 87 ~Sll~fv~~py~~~ni~~N-n~~vLa~~iiglL~i~~ 122 (198)
T COG4512 87 LSLLMFVLIPYVPFNIDAN-NYAVLAYFIIGLLLIFK 122 (198)
T ss_pred HHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHHHHHh
Confidence 3334444555555533333 44555666655554444
No 120
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=20.51 E-value=2.5e+02 Score=29.82 Aligned_cols=45 Identities=24% Similarity=0.202 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039724 161 PFKAAAASALAFLCGSFVPLLPAILFARYIVRIVVIAIVTSLALVLFGG 209 (251)
Q Consensus 161 P~~sal~s~lsf~iggliPLlpy~~~~~~~~a~~~s~~~t~~aL~~~G~ 209 (251)
|.-+.+.-|++...+|+..++|++.. +.+.+.+++++++.+++|+
T Consensus 9 p~~~v~~lflal~~lGl~~~lp~~~~----~~~l~~~~~a~~~al~~~l 53 (820)
T PF13779_consen 9 PLLSVLALFLALSWLGLWDLLPDWLR----WALLAAFAAAALAALVRGL 53 (820)
T ss_pred HHHHHHHHHHHHHHHhHHHhccHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 55667778888899999999998553 2333444444444444444
No 121
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=20.51 E-value=4e+02 Score=20.41 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHH
Q 039724 206 LFGGFGAHLGGSPIRVSAVRVLVGGWIAMGVTYGL 240 (251)
Q Consensus 206 ~~G~~ka~~~~~~~~~~~l~~l~~G~~aa~~~y~i 240 (251)
++.++...+.+.+|.|..++-++.|+++..+.-.+
T Consensus 30 ~mA~LR~~Y~g~~~~r~llea~lCg~lal~~~~~L 64 (100)
T PF05106_consen 30 VMALLRGAYGGGSWRRRLLEALLCGLLALFARSLL 64 (100)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666688999988888888877766655444
No 122
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=20.28 E-value=1.7e+02 Score=21.80 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039724 194 VVIAIVTSLALVLFGGFGAH 213 (251)
Q Consensus 194 ~~s~~~t~~aL~~~G~~ka~ 213 (251)
+..+++.+++.+++|++.+.
T Consensus 9 l~~l~~~~l~~~lvG~~~g~ 28 (90)
T PF11808_consen 9 LWRLLLLLLAAALVGWLFGH 28 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 33344444444445555433
No 123
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=20.20 E-value=4e+02 Score=24.37 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 039724 65 GLAGALAGACSMAVGEFV 82 (251)
Q Consensus 65 Gla~liAgaiSMa~G~Yl 82 (251)
|.+..+-.++..+-|+|+
T Consensus 77 G~~~A~~~G~~~A~gd~v 94 (325)
T PRK10714 77 GQHSAIMAGFSHVTGDLI 94 (325)
T ss_pred CHHHHHHHHHHhCCCCEE
Confidence 444444444555555554
No 124
>PRK01844 hypothetical protein; Provisional
Probab=20.11 E-value=3.1e+02 Score=20.11 Aligned_cols=23 Identities=0% Similarity=-0.096 Sum_probs=15.8
Q ss_pred CCCCcccchHHHHHHHcCCCCCc
Q 039724 124 TIFSPGRSPMMKVVIEDAKTFPS 146 (251)
Q Consensus 124 ~~~~~e~~el~~i~~~~g~~~~~ 146 (251)
++|....+.+...+.+-|.++.+
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSe 57 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQ 57 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccH
Confidence 45666667777777787777654
Done!