Query 039724
Match_columns 251
No_of_seqs 115 out of 1042
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 21:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 45.8 37 0.0013 24.1 5.0 10 110-119 48-57 (79)
2 4dve_A Biotin transporter BIOY 44.6 73 0.0025 26.5 7.5 76 162-242 64-148 (198)
3 3arc_I Photosystem II reaction 43.5 24 0.00081 21.7 3.1 26 193-218 7-32 (38)
4 2hjm_A Hypothetical protein PF 32.4 19 0.00065 26.8 1.7 21 25-45 43-63 (103)
5 2h3o_A MERF; membrane protein, 28.7 18 0.0006 24.8 0.9 23 163-185 22-44 (61)
6 3eff_K Voltage-gated potassium 21.7 1.5E+02 0.0052 22.3 5.3 48 162-209 5-57 (139)
7 2h88_D Succinate dehydrogenase 18.7 2.8E+02 0.0097 20.3 8.7 16 173-188 16-31 (103)
8 1ots_A Voltage-gated CLC-type 12.4 3.4E+02 0.012 24.9 6.1 29 217-245 286-314 (465)
9 3d31_C Sulfate/molybdate ABC t 11.3 6.6E+02 0.023 20.8 7.9 20 217-236 78-97 (295)
10 3arc_K Photosystem II reaction 11.0 1.6E+02 0.0055 17.9 2.2 11 176-186 14-24 (37)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=45.79 E-value=37 Score=24.09 Aligned_cols=10 Identities=10% Similarity=-0.007 Sum_probs=5.7
Q ss_pred HHhhhhhhcC
Q 039724 110 VKETKLHETE 119 (251)
Q Consensus 110 e~E~~re~~e 119 (251)
|+|++++.|+
T Consensus 48 EkE~~~~~w~ 57 (79)
T 2knc_B 48 EEERARAKWD 57 (79)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHhcccc
Confidence 3466666664
No 2
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=44.57 E-value=73 Score=26.45 Aligned_cols=76 Identities=17% Similarity=0.003 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHH-hhh-hhhhh-------HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 039724 162 FKAAAASALAFLC-GSF-VPLLP-------AILFARYIVRIVVIAIVTSLALVLFGGFGAHLGGSPIRVSAVRVLVGGWI 232 (251)
Q Consensus 162 ~~sal~s~lsf~i-ggl-iPLlp-------y~~~~~~~~a~~~s~~~t~~aL~~~G~~ka~~~~~~~~~~~l~~l~~G~~ 232 (251)
++.|..+.+.|++ |.+ +|+.. |++. ++..+++.+.++ -++.|++.-+....+..+.....++.-++
T Consensus 64 ~r~G~lsv~lYlllG~~GlPVFagg~gG~~~l~g--PTgGYLiGF~~a---A~v~G~l~~~~~~~~~~~~~~~~~~~~l~ 138 (198)
T 4dve_A 64 PKYGTISVGAFLALALIGLPVLTGGNGGAASFLG--PSGGYRIAWLFT---PFLIGFFLKKLKITTSQNWFGELIIVLLF 138 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCBTTTBCCSGGGGS--TTHHHHHHHHHH---HHHHHHHHHHTTGGGSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCccccCCCCchhHHhc--chhHHHHHHHHH---HHHHHHHHHHccccchhhHHHHHHHHHHH
Confidence 4455555555544 444 56543 3332 233445555443 34567776665433222222222233333
Q ss_pred HHHHHHHHHh
Q 039724 233 AMGVTYGLLK 242 (251)
Q Consensus 233 aa~~~y~iG~ 242 (251)
...+-|.+|.
T Consensus 139 G~~~iy~~G~ 148 (198)
T 4dve_A 139 GVIFVDFVGA 148 (198)
T ss_dssp HTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555553
No 3
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=43.46 E-value=24 Score=21.72 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC
Q 039724 193 IVVIAIVTSLALVLFGGFGAHLGGSP 218 (251)
Q Consensus 193 ~~~s~~~t~~aL~~~G~~ka~~~~~~ 218 (251)
+..++++-.+.||++|++..-=++.|
T Consensus 7 ~Vy~vV~ffvsLFiFGfLsnDP~RNP 32 (38)
T 3arc_I 7 TVYIVVTFFVLLFVFGFLSGDPARNP 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGCSS
T ss_pred eehhHHHHHHHHHHccccCCCCCCCC
Confidence 34566777788999999887665544
No 4
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, P structure initiative; 2.90A {Pyrococcus furiosus}
Probab=32.44 E-value=19 Score=26.76 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=15.4
Q ss_pred hhhhhHHHHHhhcCchHHHHH
Q 039724 25 QRGQWIRAAILGANDGLLSTT 45 (251)
Q Consensus 25 ~~~~~lr~~V~G~~DGlvt~~ 45 (251)
+.-.+++..|||...|++|++
T Consensus 43 rGe~Fv~vsIlGFlEGiLttL 63 (103)
T 2hjm_A 43 RGEAFAKASIYGFLEGILTTL 63 (103)
T ss_dssp HCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 344577888888888888775
No 5
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=28.70 E-value=18 Score=24.75 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHh
Q 039724 163 KAAAASALAFLCGSFVPLLPAIL 185 (251)
Q Consensus 163 ~sal~s~lsf~iggliPLlpy~~ 185 (251)
..|+++.++++=..++|.+||++
T Consensus 22 ~~Glsa~~~wLd~vl~P~l~~fi 44 (61)
T 2h3o_A 22 VVGLSALTGYLDYVLLPALAIFI 44 (61)
T ss_dssp HHHHHHHHHHSSSSCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777789999976
No 6
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=21.69 E-value=1.5e+02 Score=22.26 Aligned_cols=48 Identities=15% Similarity=0.078 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHhhhhh-----hHHHHHHHHHHHHHHHHHHH
Q 039724 162 FKAAAASALAFLCGSFVPLLPAILFARY-----IVRIVVIAIVTSLALVLFGG 209 (251)
Q Consensus 162 ~~sal~s~lsf~iggliPLlpy~~~~~~-----~~a~~~s~~~t~~aL~~~G~ 209 (251)
++..+...+.+++..++.-.-|.+..+. .+.+.-++-.+.+++..+||
T Consensus 5 ~r~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGy 57 (139)
T 3eff_K 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGY 57 (139)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccC
Confidence 4444444444544444444444444321 13344555555556666564
No 7
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=18.73 E-value=2.8e+02 Score=20.27 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=11.3
Q ss_pred HHhhhhhhhhHHhhhh
Q 039724 173 LCGSFVPLLPAILFAR 188 (251)
Q Consensus 173 ~iggliPLlpy~~~~~ 188 (251)
.--+++||+|+++..+
T Consensus 16 ~avallpL~p~~~~~~ 31 (103)
T 2h88_D 16 VSALLLGLLPAAYLYP 31 (103)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3457889999876543
No 8
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=12.43 E-value=3.4e+02 Score=24.90 Aligned_cols=29 Identities=7% Similarity=-0.222 Sum_probs=21.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039724 217 SPIRVSAVRVLVGGWIAMGVTYGLLKPFD 245 (251)
Q Consensus 217 ~~~~~~~l~~l~~G~~aa~~~y~iG~l~~ 245 (251)
.+.++-.++.++.|++...++|+.-..++
T Consensus 286 ~~~~~~~~~~~i~gl~~g~l~~~~P~~lG 314 (465)
T 1ots_A 286 GNITKWVLMGGAIGGLCGLLGFVAPATSG 314 (465)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHCGGGSS
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhHhhcC
Confidence 45556667888899998888888766654
No 9
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=11.32 E-value=6.6e+02 Score=20.82 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=7.9
Q ss_pred CChhHHHHHHHHHHHHHHHH
Q 039724 217 SPIRVSAVRVLVGGWIAMGV 236 (251)
Q Consensus 217 ~~~~~~~l~~l~~G~~aa~~ 236 (251)
..++++...++...++++.+
T Consensus 78 ~~~~~~l~nTl~~~~~~~~l 97 (295)
T 3d31_C 78 RSVISSIFLSLYAGFLATLL 97 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333
No 10
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=11.04 E-value=1.6e+02 Score=17.88 Aligned_cols=11 Identities=18% Similarity=0.881 Sum_probs=7.2
Q ss_pred hhhhhhhHHhh
Q 039724 176 SFVPLLPAILF 186 (251)
Q Consensus 176 gliPLlpy~~~ 186 (251)
-.+|++|.+|+
T Consensus 14 DvmPiIPv~f~ 24 (37)
T 3arc_K 14 DVLPVIPVLFL 24 (37)
T ss_dssp HHGGGHHHHHH
T ss_pred HHhchHHHHHH
Confidence 36778887654
Done!