Query 039724
Match_columns 251
No_of_seqs 115 out of 1042
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 21:59:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039724.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039724hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axti1 f.23.37.1 (I:1-35) Pho 44.4 8.9 0.00065 21.7 2.7 24 194-217 8-31 (35)
2 d1pv7a_ f.38.1.2 (A:) Lactose 38.1 78 0.0057 24.0 10.8 63 160-222 8-78 (417)
3 d2onkc1 f.58.1.1 (C:1-252) Mol 15.1 2E+02 0.014 21.4 7.0 40 207-246 68-112 (252)
4 d2axtk1 f.23.36.1 (K:10-46) Ph 14.8 38 0.0028 19.1 1.6 18 176-196 14-31 (37)
5 d1rh1a2 f.1.1.1 (A:313-511) Co 12.3 88 0.0064 24.2 3.8 10 78-87 24-33 (199)
6 d1otsa_ f.20.1.1 (A:) Clc chlo 9.4 2.4E+02 0.017 23.4 6.1 31 215-245 268-298 (444)
7 d1a87a_ f.1.1.1 (A:) Colicin N 8.3 2.2E+02 0.016 23.0 5.0 22 193-214 234-255 (297)
8 d2e74d2 f.23.12.1 (D:12-45) IS 7.7 1.3E+02 0.0095 16.3 2.2 15 171-185 18-32 (34)
9 d1otsa_ f.20.1.1 (A:) Clc chlo 6.6 3.7E+02 0.027 22.0 6.0 24 67-90 408-431 (444)
10 d3d31c1 f.58.1.1 (C:13-260) Su 5.9 4.9E+02 0.035 18.8 7.8 25 217-241 43-67 (248)
No 1
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=44.37 E-value=8.9 Score=21.65 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Q 039724 194 VVIAIVTSLALVLFGGFGAHLGGS 217 (251)
Q Consensus 194 ~~s~~~t~~aL~~~G~~ka~~~~~ 217 (251)
..++++-.++||+||++.+-=++.
T Consensus 8 Vy~vV~fFv~lFiFGFLSnDP~Rn 31 (35)
T d2axti1 8 VYIVVTFFVLLFVFGFLSGDPARN 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCS
T ss_pred hhhHHHHHHHHHHHhhccCCCCCC
Confidence 445666677899999987644443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=38.12 E-value=78 Score=24.03 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHH-hhhhhhhhHHhhhh-----hhHHHHHH--HHHHHHHHHHHHHHHHHhCCCChhHH
Q 039724 160 NPFKAAAASALAFLC-GSFVPLLPAILFAR-----YIVRIVVI--AIVTSLALVLFGGFGAHLGGSPIRVS 222 (251)
Q Consensus 160 ~P~~sal~s~lsf~i-ggliPLlpy~~~~~-----~~~a~~~s--~~~t~~aL~~~G~~ka~~~~~~~~~~ 222 (251)
|=|.-++..++.|+. +...|++|.++... ....++.+ .+...+.-.+.|.+.-|+++++...-
T Consensus 8 ~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~ 78 (417)
T d1pv7a_ 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW 78 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 457778877777665 44678888654321 12222222 22344445667889999988776543
No 3
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.14 E-value=2e+02 Score=21.36 Aligned_cols=40 Identities=28% Similarity=0.029 Sum_probs=16.4
Q ss_pred HHHHHHHhC-C-CChhHHHHHHHHHH---HHHHHHHHHHHhhhcc
Q 039724 207 FGGFGAHLG-G-SPIRVSAVRVLVGG---WIAMGVTYGLLKPFDS 246 (251)
Q Consensus 207 ~G~~ka~~~-~-~~~~~~~l~~l~~G---~~aa~~~y~iG~l~~~ 246 (251)
+|...|..- + ..+.|+.++.+..- .-....++....+++.
T Consensus 68 ~g~~la~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~ 112 (252)
T d2onkc1 68 FGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGS 112 (252)
T ss_dssp HHHHHHHHHHSCCCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHhhccCChHHHHHHHhhhccc
Confidence 455554332 2 22345555544322 2223344444444443
No 4
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.83 E-value=38 Score=19.09 Aligned_cols=18 Identities=17% Similarity=0.545 Sum_probs=11.3
Q ss_pred hhhhhhhHHhhhhhhHHHHHH
Q 039724 176 SFVPLLPAILFARYIVRIVVI 196 (251)
Q Consensus 176 gliPLlpy~~~~~~~~a~~~s 196 (251)
-.+|++|.+|+ ..+|.|-
T Consensus 14 dvlPiIPv~f~---lLafVWQ 31 (37)
T d2axtk1 14 DVLPVIPVLFL---ALAFVWQ 31 (37)
T ss_dssp HHGGGHHHHHH---HHHHHHH
T ss_pred HHhccHHHHHH---HHHHHHH
Confidence 46788887765 2445553
No 5
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.34 E-value=88 Score=24.15 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=5.7
Q ss_pred hhhhhhhhhh
Q 039724 78 VGEFVSVSTQ 87 (251)
Q Consensus 78 ~G~YlS~kse 87 (251)
+++|++.|..
T Consensus 24 i~e~~G~Ky~ 33 (199)
T d1rh1a2 24 VGEYLGDKYK 33 (199)
T ss_dssp HHHHHCHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666543
No 6
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=9.44 E-value=2.4e+02 Score=23.35 Aligned_cols=31 Identities=10% Similarity=-0.152 Sum_probs=17.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039724 215 GGSPIRVSAVRVLVGGWIAMGVTYGLLKPFD 245 (251)
Q Consensus 215 ~~~~~~~~~l~~l~~G~~aa~~~y~iG~l~~ 245 (251)
...++.+-.+...+.|.+...++|.....++
T Consensus 268 ~~~~~~~~~l~~~~~~~l~~ll~~~~p~~~g 298 (444)
T d1otsa_ 268 HGGNITKWVLMGGAIGGLCGLLGFVAPATSG 298 (444)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHCGGGSS
T ss_pred hcccchhHHHHHHHHHHHHHHHhccCcccCC
Confidence 3444555555556666666666666555543
No 7
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=8.27 E-value=2.2e+02 Score=22.97 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 039724 193 IVVIAIVTSLALVLFGGFGAHL 214 (251)
Q Consensus 193 ~~~s~~~t~~aL~~~G~~ka~~ 214 (251)
+.++.+.+.+++++|+++.+.+
T Consensus 234 laag~~As~vva~~FS~il~~l 255 (297)
T d1a87a_ 234 WIIGGVVAGVAISLFGAVLSFL 255 (297)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666544
No 8
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.73 E-value=1.3e+02 Score=16.26 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=12.0
Q ss_pred HHHHhhhhhhhhHHh
Q 039724 171 AFLCGSFVPLLPAIL 185 (251)
Q Consensus 171 sf~iggliPLlpy~~ 185 (251)
...+|++-|++-||+
T Consensus 18 g~alg~lypvvkyfi 32 (34)
T d2e74d2 18 GVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHhhhhhHHhhcC
Confidence 346899999999965
No 9
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=6.57 E-value=3.7e+02 Score=22.04 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHH
Q 039724 67 AGALAGACSMAVGEFVSVSTQRDI 90 (251)
Q Consensus 67 a~liAgaiSMa~G~YlS~kse~d~ 90 (251)
..++|..+|+.++.++..++=+|.
T Consensus 408 p~~ia~~~a~~v~~~~~~~siY~~ 431 (444)
T d1otsa_ 408 PMIITGLGATLLAQFTGGKPLYSA 431 (444)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCChHHH
Confidence 456677888888888887765543
No 10
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=5.88 E-value=4.9e+02 Score=18.76 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=10.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 039724 217 SPIRVSAVRVLVGGWIAMGVTYGLL 241 (251)
Q Consensus 217 ~~~~~~~l~~l~~G~~aa~~~y~iG 241 (251)
.+++++...++...++++.++..+|
T Consensus 43 ~~~~~~l~~Sl~~a~~s~~i~~~lg 67 (248)
T d3d31c1 43 RSVISSIFLSLYAGFLATLLALLLG 67 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333
Done!