BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039727
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U1N|A Chain A, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|B Chain B, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|C Chain C, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|D Chain D, Structure Of The Catalytic Core Of Human Samhd1
Length = 528
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 165/483 (34%), Positives = 251/483 (51%), Gaps = 57/483 (11%)
Query: 47 DNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAV 106
D +HG+I L PL ++ IDT +FQRLR +KQLG + V+PGA H+RFEHSLGV +LAG V
Sbjct: 22 DPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLV 81
Query: 107 QTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSL 166
L + Q EL I + D+ V++AGL HD+GHGPFSH F+ F+P WTHE S+
Sbjct: 82 HALGEKQP-ELQISERDVLCVQIAGLCHDLGHGPFSHXFDGRFIPLARPEVKWTHEQGSV 140
Query: 167 KMIDYIVDQHYI-------------DID------SGRLDREMIVTSHASQKSAKEKQFLY 207
+++++ + I DI G L+ + + + + K FLY
Sbjct: 141 XXFEHLINSNGIKPVXEQYGLIPEEDICFIKEQIVGPLESPVEDSLWPYKGRPENKSFLY 200
Query: 208 DIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRV--MGDE--ICYRAKDYLT 263
+IV+N RNGIDVDK+DY RD G+ NF ++R ++ RV + +E IC R K+
Sbjct: 201 EIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARDKEVGN 260
Query: 264 VYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLG----------ISSSIQQPAE 313
+Y F R LHR Y H I+ + DA L+A++++ IS++I
Sbjct: 261 LYDXFHTRNSLHRRAYQHKVGNIIDTXITDAFLKADDYIEITGAGGKKYRISTAIDDXEA 320
Query: 314 FWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP---KAKQEHFKGITA 370
+ KL D I IL P+LK AR+I+ ++ R L+++ E K K+E ++ +
Sbjct: 321 YTKLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESLPK 380
Query: 371 QDIVCSQKAG---EVTLKEEDVIVSIVKIDLTRGKKNPLERYD-YCSDV--KFLIDKEER 424
+ V S K +V LK ED IV ++ D +KNP++ YC + + + +
Sbjct: 381 E--VASAKPKVLLDVKLKAEDFIVDVINXDYGXQEKNPIDHVSFYCKTAPNRAIRITKNQ 438
Query: 425 ISHLLPTFCQDMIVRVYAKE----------PHLVEAVSDAFENFQMKTYGEKTQVHSTPE 474
+S LLP + ++RVY K+ + V+ +D NF G+ TP+
Sbjct: 439 VSQLLPEKFAEQLIRVYCKKVDRKSLYAARQYFVQWCAD--RNFTKPQDGDVIAPLITPQ 496
Query: 475 KKK 477
KK+
Sbjct: 497 KKE 499
>pdb|2HEK|A Chain A, Crystal Structure Of O67745, A Hypothetical Protein From
Aquifex Aeolicus At 2.0 A Resolution.
pdb|2HEK|B Chain B, Crystal Structure Of O67745, A Hypothetical Protein From
Aquifex Aeolicus At 2.0 A Resolution
Length = 371
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 133/254 (52%), Gaps = 20/254 (7%)
Query: 43 KHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLA 102
K D ++G + + L+ ID+ FQRLR +KQLGL++LV+P A H+RFEHSLGVY +
Sbjct: 3 KEFSDPLYGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHIT 62
Query: 103 GTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHE 162
++LK + + VKLAGLLHD+GH PFSH E LPR +HE
Sbjct: 63 ERICESLKVKEK----------ELVKLAGLLHDLGHPPFSHTTEV-LLPR-----ERSHE 106
Query: 163 DMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKF 222
D + ++I + D D E +V + +E++ L +I+ G G D+
Sbjct: 107 DFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPEDEEEKLLSEII-TGEFG--SDRM 163
Query: 223 DYIVRDSRACGLGCN-FQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYTH 281
DY+ RD+ CG+ F ++RL+ T+RV +++ + +R ++ VY H
Sbjct: 164 DYLRRDAYFCGVSYGFFDYDRLISTLRVYENKVVVDESGLRALENFLISRYFMYVQVYFH 223
Query: 282 AKVKAIELMLVDAL 295
V+ + + LV+ L
Sbjct: 224 KVVRILSIHLVEFL 237
>pdb|2Q14|A Chain A, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|B Chain B, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|C Chain C, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|D Chain D, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|E Chain E, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|F Chain F, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|G Chain G, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|H Chain H, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
Length = 410
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 119/234 (50%), Gaps = 23/234 (9%)
Query: 68 FQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTV 127
QRL +KQ+GLS +VYPGA H+RF+HSLG ++L A+ L I D + + V
Sbjct: 33 LQRLTRIKQVGLSSVVYPGAQHTRFQHSLGAFYLXSEAITQLTSKGNF---IFDSEAEAV 89
Query: 128 KLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDR 187
+ A LLHD+GHGPFSH+ E + V +HE++SL + + + +G+L
Sbjct: 90 QAAILLHDIGHGPFSHVLEDTIVQGV------SHEEISLXLXERXNKE-----XNGQLSL 138
Query: 188 EMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLG-CNFQFERLMET 246
+ + K K+FL+ +V+ +D D+ DY+ RDS G+ N R+++
Sbjct: 139 AIQIF-----KDEYPKRFLHQLVS---GQLDXDRLDYLRRDSFYTGVTEGNIGSARIIKX 190
Query: 247 MRVMGDEICYRAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANE 300
+ V D + +K ++ +AR + VY H A E L+ LL A E
Sbjct: 191 LDVADDRLVIESKGIYSIENFLTARRLXYWQVYLHKTSVAYERXLISTLLRAKE 244
>pdb|2O6I|A Chain A, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|2O6I|B Chain B, Structure Of An Enterococcus Faecalis Hd Domain
Phosphohydrolase
pdb|3IRH|A Chain A, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|B Chain B, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|C Chain C, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
pdb|3IRH|D Chain D, Structure Of An Enterococcus Faecalis Hd-Domain Protein
Complexed With Dgtp And Datp
Length = 480
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 133/299 (44%), Gaps = 34/299 (11%)
Query: 47 DNVHGNIYLD-PLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTA 105
D VH I++ + L I++ E QRLR +KQLG S + GA HSRF HSLGVY +
Sbjct: 42 DPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLGVYEITRRI 101
Query: 106 VQTLKDYQGLEL----DIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTH 161
+ + +E +D + A LLHDVGHGP+SH FE F + H
Sbjct: 102 CEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIF--------DTNH 153
Query: 162 EDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDK 221
E +++++I + Y ++ D V S +++ + +V + ID D+
Sbjct: 154 EAITVQIITSPETEVYQILNRVSADFPEKVASVITKQYPNPQ-----VVQMISSQIDADR 208
Query: 222 FDYIVRDSRACGLG-CNFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYT 280
DY++RD+ G F R++ +R I + V +R ++ VY
Sbjct: 209 MDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVEDYIVSRYQMYVQVYF 268
Query: 281 HAKVKAIELMLVDALLEANEHL-------GISSSIQQP--------AEFWKLDDTIINA 324
H + +E++L L A E + +S+ P E+ KLDD +++
Sbjct: 269 HPVSRGMEVILDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGVLST 327
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 24/154 (15%)
Query: 262 LTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANE--HLGISSSIQQPAEF----- 314
L V F L R V KA+E++L ++A E LG+ ++ PAE
Sbjct: 142 LGVIPGFGGTQRLPRLV---GLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTAR 198
Query: 315 -WKLDDT------IINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVPKAKQEHFKG 367
W LD + + D P L +AR+I+ + + L + N K
Sbjct: 199 RWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM----KHPLMCLDA 254
Query: 368 ITAQDIVCSQKAGEVTLKEEDVIVSIVKIDLTRG 401
I IV +AG KE +V +VK+D T+G
Sbjct: 255 IEV-GIVSGPRAG--LEKEAEVASQVVKLDTTKG 285
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 54 IDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVP 95
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 19/89 (21%)
Query: 115 LELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVD 174
+EL ++ I+T LA LLH + P +F+ NWTH LK D
Sbjct: 841 IELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRE-----NWTH---LLKKFDL--- 889
Query: 175 QHYIDIDSGRLDREMIVTSHASQKSAKEK 203
G D MI++ + S+K+K
Sbjct: 890 --------GSYDIRMIISGTTAHFSSKDK 910
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 19/89 (21%)
Query: 115 LELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVD 174
+EL ++ I+T LA LLH + P +F+ NWTH LK D
Sbjct: 841 IELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRE-----NWTH---LLKKFDL--- 889
Query: 175 QHYIDIDSGRLDREMIVTSHASQKSAKEK 203
G D MI++ + S+K+K
Sbjct: 890 --------GSYDIRMIISGTTAHFSSKDK 910
>pdb|2VIS|C Chain C, Influenza Virus Hemagglutinin, (Escape) Mutant With Thr
131 Replaced By Ile, Complexed With A Neutralizing
Antibody
Length = 282
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 35 IDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVP 76
>pdb|3HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
Length = 328
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 62 IDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVP 103
>pdb|5HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|1HGF|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGF|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGF|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGI|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGI|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGI|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGJ|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1QFU|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1EO8|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1KEN|A Chain A, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|C Chain C, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|E Chain E, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|2YPG|A Chain A, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|C Chain C, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|E Chain E, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
Length = 328
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 62 IDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVP 103
>pdb|4FP8|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|C Chain C, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|D Chain D, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
Length = 278
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 24 IDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVP 65
>pdb|3SDY|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody Cr8020
Bound To The Influenza A H3 Hemagglutinin
pdb|4FQY|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H3 Influenza Hemagglutinin
pdb|4FNK|A Chain A, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FNK|C Chain C, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FNK|E Chain E, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FQR|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|C Chain C, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|E Chain E, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|G Chain G, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|I Chain I, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|K Chain K, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|O Chain O, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|Q Chain Q, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|S Chain S, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|U Chain U, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|W Chain W, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
Length = 323
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 56 IDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVP 97
>pdb|2HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
Length = 328
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 62 IDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVP 103
>pdb|2VIU|A Chain A, Influenza Virus Hemagglutinin
Length = 328
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 62 IDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVP 103
>pdb|3EYM|A Chain A, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|C Chain C, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|E Chain E, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
Length = 321
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 54 IDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVP 95
>pdb|2DQB|A Chain A, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|B Chain B, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|C Chain C, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|D Chain D, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|E Chain E, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
pdb|2DQB|F Chain F, Crystal Structure Of Dntp Triphosphohydrolase From Thermus
Thermophilus Hb8, Which Is Homologous To Dgtp
Triphosphohydrolase
Length = 376
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 32/161 (19%)
Query: 26 STDELLKSNSSQKERYSKHVHDNVHGNIYLDPLAL----------QFIDTEEFQRLRDLK 75
S + LL+ +S+ Y++ D G + +P +L + + T F+RL
Sbjct: 4 SREALLELEASRLAPYAQKARDT-RGRAHPEPESLYRTPYQKDRDRILHTTAFRRLEYKT 62
Query: 76 QLGLSHLVYPGAV----HSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAG 131
Q V PG +R H+L V ++ + + L GL D+ +
Sbjct: 63 Q------VLPGWAGDYYRTRLTHTLEVAQVSRSIARAL----GLNEDLTEA-------IA 105
Query: 132 LLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYI 172
L HD+GH PF H E + H +L+++ ++
Sbjct: 106 LSHDLGHPPFGHTGEHVLNALXQDHGGFEHNAQALRILTHL 146
>pdb|3VUN|A Chain A, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|C Chain C, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|E Chain E, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group
Length = 329
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 62 IDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVP 103
>pdb|3ZTJ|A Chain A, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|C Chain C, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|E Chain E, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin
Length = 329
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 62 IDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVP 103
>pdb|1HGD|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
Length = 328
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 62 IDCTLIDALLGDPHCDVFQNETWDLFVERSKAFSNCYPYDVP 103
>pdb|2VIR|C Chain C, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 282
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 35 IDCTLIDALLGDPHCDVFQDETWDLFVERSKAFSNCYPYDVP 76
>pdb|2VIT|C Chain C, Influenza Virus Hemagglutinin, Mutant With Thr 155
Replaced By Ile, Complexed With A Neutralizing Antibody
Length = 282
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 317 LDDTIINAILADPRPELKKARDIILRVRRRQLYQFCNEYSVP 358
+D T+I+A+L DP ++ + L V R + + C Y VP
Sbjct: 35 IDCTLIDALLGDPHCDVFQDETWDLFVERSKAFSNCYPYDVP 76
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 291 LVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQ 350
L+DA + EH ++S +Q+ + +K II + D EL + +D + R R++ +
Sbjct: 363 LLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMD---ELSE-QDKLTVERARKIQR 418
Query: 351 FCNEYSVPKAKQEHFKGITA-----QDIVCSQKA 379
F ++ P A E F GI +D V S KA
Sbjct: 419 FLSQ---PFAVAEVFTGIPGKLVRLKDTVASFKA 449
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 291 LVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQ 350
L+DA + EH ++S +Q+ + +K II + D EL + +D + R R++ +
Sbjct: 352 LLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMD---ELSE-QDKLTVERARKIQR 407
Query: 351 FCNEYSVPKAKQEHFKGITA-----QDIVCSQKA 379
F ++ P A E F GI +D V S KA
Sbjct: 408 FLSQ---PFAVAEVFTGIPGKLVRLKDTVASFKA 438
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 291 LVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQ 350
L+DA + EH ++S +Q+ + +K II + D EL + +D + R R++ +
Sbjct: 363 LLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMD---ELSE-QDKLTVERARKIQR 418
Query: 351 FCNEYSVPKAKQEHFKGITA-----QDIVCSQKA 379
F ++ P A E F GI +D V S KA
Sbjct: 419 FLSQ---PFAVAEVFTGIPGKLVRLKDTVASFKA 449
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 291 LVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQ 350
L+DA + EH ++S +Q+ + +K II + D EL + +D + R R++ +
Sbjct: 357 LLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMD---ELSE-QDKLTVERARKIQR 412
Query: 351 FCNEYSVPKAKQEHFKGITA-----QDIVCSQKA 379
F ++ P A E F GI +D V S KA
Sbjct: 413 FLSQ---PFAVAEVFTGIPGKLVRLKDTVASFKA 443
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 291 LVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQ 350
L+DA + EH ++S +Q+ + +K II + D EL + +D + R R++ +
Sbjct: 352 LLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMD---ELSE-QDKLTVERARKIQR 407
Query: 351 FCNEYSVPKAKQEHFKGITA-----QDIVCSQKA 379
F ++ P A E F GI +D V S KA
Sbjct: 408 FLSQ---PFAVAEVFTGIPGKLVRLKDTVASFKA 438
>pdb|2PGS|A Chain A, Crystal Structure Of A Putative Deoxyguanosinetriphosphate
Triphosphohydrolase From Pseudomonas Syringae Pv.
Phaseolicola 1448a
Length = 451
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 74 LKQLGLSHLVYPGA----VHSRFEHSLGVYW----LAGTAVQTLKDYQGLELDIDDIDIQ 125
++LG V+P + +H+R HSL V L +TL+ D D+
Sbjct: 42 FRRLGRKTQVHPVSSNDHIHTRLTHSLEVSCVGRSLGXRVGETLRAALPDWCDPSDLG-X 100
Query: 126 TVKLAGLLHDVGHGPFSHMFE 146
V+ A L HD+G+ PF H E
Sbjct: 101 VVQSACLAHDIGNPPFGHSGE 121
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 291 LVDALLEANEHLGISSSIQQPAEFWKLDDTIINAILADPRPELKKARDIILRVRRRQLYQ 350
L+DA + EH ++S +Q+ + +K II + D EL + +D + R R++ +
Sbjct: 390 LLDAAVVGQEHYDVASKVQETLQTYKSLQDIIAILGMD---ELSE-QDKLTVERARKIQR 445
Query: 351 FCNEYSVPKAKQEHFKGITA-----QDIVCSQKA 379
F ++ P A E F GI +D V S KA
Sbjct: 446 FLSQ---PFAVAEVFTGIPGKLVRLKDTVASFKA 476
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,239,965
Number of Sequences: 62578
Number of extensions: 592312
Number of successful extensions: 1402
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1370
Number of HSP's gapped (non-prelim): 32
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)