Query 039727
Match_columns 480
No_of_seqs 236 out of 1501
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 12:39:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2681 Metal-dependent phosph 100.0 7E-101 2E-105 774.9 23.3 441 37-479 20-496 (498)
2 COG1078 HD superfamily phospho 100.0 2.7E-74 5.9E-79 601.9 23.7 386 41-457 2-414 (421)
3 PRK01286 deoxyguanosinetriphos 99.9 3.8E-26 8.2E-31 232.5 14.7 222 55-302 29-285 (336)
4 TIGR01353 dGTP_triPase deoxygu 99.9 2.4E-22 5.2E-27 209.1 10.7 125 56-186 6-139 (381)
5 PRK01096 deoxyguanosinetriphos 99.8 2.8E-20 6.1E-25 196.4 14.5 127 54-186 27-181 (440)
6 PRK05318 deoxyguanosinetriphos 99.8 4.7E-20 1E-24 194.6 9.9 128 55-186 25-157 (432)
7 PRK04926 dgt deoxyguanosinetri 99.7 4E-18 8.6E-23 181.6 8.0 89 55-149 32-132 (503)
8 PRK03007 deoxyguanosinetriphos 99.7 1.1E-17 2.3E-22 175.9 8.2 116 54-186 36-163 (428)
9 COG0232 Dgt dGTP triphosphohyd 99.3 1.4E-12 3E-17 135.7 7.7 117 57-185 37-161 (412)
10 PF01966 HD: HD domain; Inter 99.0 1.3E-10 2.7E-15 99.8 3.2 89 91-194 1-89 (122)
11 cd00077 HDc Metal dependent ph 98.8 1.8E-08 3.9E-13 87.0 7.4 120 89-228 1-128 (145)
12 TIGR00488 putative HD superfam 98.5 1.4E-07 2.9E-12 87.1 6.3 122 89-227 7-138 (158)
13 smart00471 HDc Metal dependent 98.4 6.2E-07 1.3E-11 75.9 6.4 117 88-232 2-122 (124)
14 PRK10119 putative hydrolase; P 98.2 3.4E-06 7.3E-11 82.6 8.3 117 87-234 23-146 (231)
15 TIGR03401 cyanamide_fam HD dom 97.9 3.7E-05 7.9E-10 75.3 8.1 112 90-228 55-169 (228)
16 TIGR03276 Phn-HD phosphonate d 97.8 2.1E-05 4.5E-10 74.0 4.9 69 84-173 19-87 (179)
17 COG1418 Predicted HD superfami 97.4 0.00029 6.2E-09 68.8 5.9 62 90-175 36-97 (222)
18 COG1713 Predicted HD superfami 97.3 0.00025 5.3E-09 67.0 3.9 38 90-138 17-54 (187)
19 TIGR00295 conserved hypothetic 97.1 0.00097 2.1E-08 62.1 6.4 60 90-170 13-72 (164)
20 PRK12703 tRNA 2'-O-methylase; 97.0 0.0021 4.5E-08 66.4 8.4 55 90-170 187-241 (339)
21 PRK13480 3'-5' exoribonuclease 97.0 0.0025 5.4E-08 65.4 8.9 139 63-224 123-278 (314)
22 PRK07152 nadD putative nicotin 96.8 0.0017 3.7E-08 67.4 5.3 74 87-171 193-270 (342)
23 COG4341 Predicted HD phosphohy 96.8 0.0015 3.2E-08 60.0 4.2 68 84-173 24-93 (186)
24 TIGR03319 YmdA_YtgF conserved 96.7 0.0044 9.5E-08 67.7 8.0 74 90-195 329-402 (514)
25 PRK12705 hypothetical protein; 96.6 0.0058 1.3E-07 66.4 7.8 88 89-211 322-409 (508)
26 PRK00106 hypothetical protein; 96.6 0.0046 1E-07 67.6 7.1 75 89-195 349-423 (535)
27 PRK12704 phosphodiesterase; Pr 96.6 0.0064 1.4E-07 66.6 8.2 87 90-211 335-421 (520)
28 TIGR00277 HDIG uncharacterized 96.4 0.0051 1.1E-07 48.7 4.8 59 90-170 4-62 (80)
29 TIGR01596 cas3_HD CRISPR-assoc 96.2 0.0077 1.7E-07 55.6 5.4 81 92-177 2-84 (177)
30 PRK04374 PII uridylyl-transfer 96.2 0.016 3.4E-07 67.3 9.0 91 66-186 431-529 (869)
31 PF00233 PDEase_I: 3'5'-cyclic 96.1 0.008 1.7E-07 59.2 5.4 53 89-146 2-54 (237)
32 PRK00227 glnD PII uridylyl-tra 95.9 0.018 3.9E-07 65.0 7.6 66 90-186 380-445 (693)
33 COG2206 c-di-GMP phosphodieste 95.7 0.015 3.2E-07 60.5 5.2 39 92-138 150-188 (344)
34 PRK10885 cca multifunctional t 95.5 0.026 5.6E-07 60.1 6.6 64 90-178 227-290 (409)
35 PRK03381 PII uridylyl-transfer 95.4 0.033 7.1E-07 64.0 7.4 60 91-179 421-480 (774)
36 PRK13298 tRNA CCA-pyrophosphor 95.1 0.052 1.1E-06 57.8 7.0 97 58-178 180-293 (417)
37 PRK05007 PII uridylyl-transfer 94.8 0.055 1.2E-06 63.0 7.0 108 57-186 413-541 (884)
38 TIGR03760 ICE_TraI_Pfluor inte 94.8 0.037 8E-07 54.0 4.5 44 92-139 69-120 (218)
39 PRK01759 glnD PII uridylyl-tra 94.7 0.073 1.6E-06 61.8 7.6 71 90-179 436-511 (854)
40 PRK00275 glnD PII uridylyl-tra 94.6 0.072 1.6E-06 62.1 7.3 105 58-186 413-540 (895)
41 PRK05092 PII uridylyl-transfer 94.6 0.067 1.4E-06 62.7 6.9 94 71-185 461-572 (931)
42 TIGR01693 UTase_glnD [Protein- 94.5 0.077 1.7E-06 61.6 7.3 102 59-179 382-503 (850)
43 PRK03059 PII uridylyl-transfer 94.1 0.099 2.1E-06 60.8 6.8 108 57-186 392-520 (856)
44 COG1896 Predicted hydrolases o 93.7 0.13 2.8E-06 49.3 5.7 64 66-137 10-74 (193)
45 KOG3689 Cyclic nucleotide phos 92.3 0.18 3.8E-06 56.7 5.1 53 87-146 429-483 (707)
46 TIGR02692 tRNA_CCA_actino tRNA 91.6 0.41 8.9E-06 51.8 6.8 71 90-179 258-328 (466)
47 PRK11031 guanosine pentaphosph 91.0 0.35 7.6E-06 52.8 5.7 44 92-139 324-367 (496)
48 PRK10854 exopolyphosphatase; P 90.6 0.64 1.4E-05 51.0 7.2 45 92-138 330-374 (513)
49 COG2844 GlnD UTP:GlnB (protein 90.5 0.57 1.2E-05 53.3 6.7 90 66-180 428-522 (867)
50 COG3437 Response regulator con 88.6 0.53 1.2E-05 48.8 4.3 44 88-139 183-226 (360)
51 TIGR02621 cas3_GSU0051 CRISPR- 88.4 0.57 1.2E-05 54.1 4.8 52 85-147 670-721 (844)
52 COG3294 HD supefamily hydrolas 88.1 1.4 3E-05 43.1 6.5 93 61-174 30-131 (269)
53 COG1480 Predicted membrane-ass 87.4 1.3 2.7E-05 49.6 6.5 38 90-139 490-527 (700)
54 PRK03826 5'-nucleotidase; Prov 87.0 1.5 3.2E-05 42.1 6.1 63 67-137 8-70 (195)
55 PF08668 HDOD: HDOD domain; I 86.7 0.095 2E-06 49.4 -2.3 48 90-147 94-141 (196)
56 PF13023 HD_3: HD domain; PDB: 80.5 1.9 4E-05 40.1 3.7 59 69-137 2-60 (165)
57 PF13328 HD_4: HD domain; PDB: 65.5 6.6 0.00014 35.7 3.4 32 89-136 18-49 (153)
58 PF07514 TraI_2: Putative heli 64.9 5.5 0.00012 41.3 3.0 43 92-138 68-118 (327)
59 TIGR02562 cas3_yersinia CRISPR 62.2 8.5 0.00018 45.6 4.2 48 124-174 113-164 (1110)
60 COG3481 Predicted HD-superfami 57.0 6.3 0.00014 40.0 1.8 50 80-139 124-180 (287)
61 COG2254 Predicted HD superfami 53.9 18 0.00039 35.7 4.3 54 118-177 44-98 (230)
62 PF04263 TPK_catalytic: Thiami 52.3 12 0.00025 33.2 2.5 36 71-106 77-112 (123)
63 PF13286 HD_assoc: Phosphohydr 52.2 24 0.00051 29.0 4.3 34 269-302 13-46 (92)
64 COG0248 GppA Exopolyphosphatas 49.5 33 0.00072 37.6 5.9 44 92-138 328-371 (492)
65 COG2316 Predicted hydrolase (H 44.1 28 0.00061 32.7 3.7 34 93-137 50-83 (212)
66 PF12917 HD_2: HD containing h 40.1 73 0.0016 31.1 6.0 45 87-137 26-70 (215)
67 PF05153 DUF706: Family of unk 36.8 40 0.00086 33.6 3.7 14 125-138 82-95 (253)
68 TIGR01378 thi_PPkinase thiamin 34.7 35 0.00076 32.7 3.0 35 72-106 80-114 (203)
69 COG1639 Predicted signal trans 33.9 27 0.00059 35.6 2.1 46 93-148 119-164 (289)
70 cd07995 TPK Thiamine pyrophosp 32.5 37 0.00081 32.5 2.8 37 71-107 83-119 (208)
71 TIGR02578 cas_TM1811_Csm1 CRIS 31.8 15 0.00034 41.5 0.0 12 127-138 1-12 (648)
72 KOG1573 Aldehyde reductase [Ge 29.8 42 0.00092 31.4 2.5 13 126-138 117-129 (204)
73 TIGR00691 spoT_relA (p)ppGpp s 22.8 68 0.0015 36.7 3.1 25 253-277 294-318 (683)
74 COG1353 Predicted CRISPR-assoc 21.8 51 0.0011 38.4 1.8 15 123-137 4-18 (799)
75 PRK09694 helicase Cas3; Provis 21.0 1.1E+02 0.0023 36.3 4.2 88 88-177 24-130 (878)
No 1
>KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown]
Probab=100.00 E-value=7e-101 Score=774.89 Aligned_cols=441 Identities=46% Similarity=0.706 Sum_probs=405.3
Q ss_pred cccccccccccCCCCCcccChHHHHHhcCHHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCC
Q 039727 37 QKERYSKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLE 116 (480)
Q Consensus 37 ~~~~~~k~i~DpvhG~I~l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~ 116 (480)
+.+..+++|+|+|||.|+++|.+.+|||||+|||||+++|||+.|+|||||+||||||||||+.||+.+++.|+++|.+|
T Consensus 20 ~~~~~~~ii~d~vhg~i~l~pli~~lidt~~FqRLr~vkQlGl~~~vyp~A~HsRfeHsLG~~~lA~~~v~~L~~~q~~E 99 (498)
T KOG2681|consen 20 QILDPSKIINDNVHGEIELPPLIIKLIDTPLFQRLRHVKQLGLRYLVYPGANHSRFEHSLGTYTLAGILVNALNKNQCPE 99 (498)
T ss_pred ccCCHHHhhccccCceecCChHHHHHhccHHHHHHHHHHHhCceeeeccCCccchhhhhhhhHHHHHHHHHHHhhcCCCC
Confidence 34455899999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCC--------CChhhhhh-
Q 039727 117 LDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYID--------IDSGRLDR- 187 (480)
Q Consensus 117 l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~--------~~~~~~~~- 187 (480)
++|++.|.+||++||||||||||||||+||..|.+.+.+|..|.||++|..|++++.++++++ ++.++++.
T Consensus 100 l~It~~d~~~vqvA~LLHDIGHGPfSHmFe~~f~~~v~s~~e~~HE~~si~~i~~i~~~~~i~~~~~~~~~~~~~~~~~v 179 (498)
T KOG2681|consen 100 LCITEVDLQAVQVAALLHDIGHGPFSHLFEGEFTPMVRSGPEFYHEDMSIDMIKKISNEMQIKRIARCLLNIDHQDADAV 179 (498)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCchhhhhhheecccccCCcccchhhhHHHHHHHHhhhhhhhhHHHhhcCCCHHHHHHH
Confidence 999999999999999999999999999999999998889999999999999999999988775 66666665
Q ss_pred -hhhhccCCC-----ccc-ccchhhHHhhhhcCCCCccccccccccccccccCCCCcc--hHHHhhcceEE--ECCeEEe
Q 039727 188 -EMIVTSHAS-----QKS-AKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNF--QFERLMETMRV--MGDEICY 256 (480)
Q Consensus 188 -~~I~~~~~~-----~~~-~~~~~~l~~Iv~n~~~~lDvDrlDYl~RDs~~~Gv~~~~--D~~rLi~~~~v--~~~~i~~ 256 (480)
++|+|..+. .++ ..++.|||+||+|+++||||||||||.|||.+||+..+| |++||+..+|| .+++|||
T Consensus 180 KdmI~g~sE~~~~w~l~g~~~~ksflfdIVsN~rnGiDVDK~DYl~RD~~~~Gi~~~fs~~~~rl~~~~RV~~~~n~I~y 259 (498)
T KOG2681|consen 180 KDMILGSSEDDHKWYLKGPDENKSFLFDIVSNDRNGLDVDKFDYLRRDSKALGIGNNFSQDFTRLFLGARVVIDDNRICY 259 (498)
T ss_pred HHHhcCcccccccccccCCCCCceEEEEEecCCcccccchhHHHHHhhccccccccchHHHHHHHhhcceeeccCCEeEe
Confidence 899998763 223 345679999999999999999999999999999999988 99999999999 6889999
Q ss_pred ecccHHHHHHHHHHHHhhhhHHhcCchhHHHHHHHHHHHHHhhhhhCCC-cCCCChHHHhhCCHHHHHHHHhCCCcccHH
Q 039727 257 RAKDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGIS-SSIQQPAEFWKLDDTIINAILADPRPELKK 335 (480)
Q Consensus 257 ~~k~~~~i~~~~~~R~~my~~VY~H~~~~~~e~ml~~al~~a~~~l~is-~~~~dp~~yl~LDD~il~~i~~s~~~~l~~ 335 (480)
+.|++.+++.||.+|+.+|+.||+|++++|+|.|++|||.+|++++.++ ..++||++|++|||.++..|+.+++|++.+
T Consensus 260 r~k~~~~l~~lf~tR~~Lhr~vYqhp~~~~mdlmivDal~ra~~~l~it~~~i~D~~~~~kldD~vl~~I~~~~DP~l~e 339 (498)
T KOG2681|consen 260 RIKCYGSLYVLFHTRYLLHRKVYQHPQVGAMDLMIVDALTRALDHLEITRSYIQDPNAFSKLDDYVLAEIEQSTDPKLVE 339 (498)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhhhhHHHhhhhhhcCHHHHHHhhHHHHHHhhcCCCchhHH
Confidence 9999999999999999999999999999999999999999999999998 488899999999999999999999999999
Q ss_pred HHHHHHHhhcCCcceeccccccC---hhhhhhcccCChhhhhhhhccCCCCCCCCceEEEeEEeccCCCCCCCCCccccC
Q 039727 336 ARDIILRVRRRQLYQFCNEYSVP---KAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIVSIVKIDLTRGKKNPLERYDYC 412 (480)
Q Consensus 336 a~~ll~ri~~R~Lyk~v~e~~v~---~~~~~~~~~~~~~eii~~~~~~~~~l~~~diiv~~~~id~~~~~~~Pl~~V~f~ 412 (480)
|++++.|+.+|.+|++.+|+..+ ...++.++.+++++++|++.... .++.+||++++..|++|+|.+||++.|.|+
T Consensus 340 aqell~ri~~R~~y~~~~Eta~~~~~k~kie~~k~v~~~~~~~~q~~~t-~~k~edia~t~i~i~~grg~~nple~I~f~ 418 (498)
T KOG2681|consen 340 AQELLLRIERRGYYPYNPETAPNHDLKRKIEDIKHVFPEALIKTQCEIT-LLKYEDIAFTVIHIDLGRGTKNPLEKILFY 418 (498)
T ss_pred HHHHHHHHhhccccCCCCCcCCCcccchhhhhhhccChHHHhhcccccc-ccchhheeeeeEEeeeccCCCChhHHhhhc
Confidence 99999999999999999998877 55677788888899998765433 378899999999999999999999999763
Q ss_pred ----CCceeecCccccccccCcCCCCceEEEEEecCCC--cHHHHHHHH------HHHHHHHcCCCCCCCCCccccccC
Q 039727 413 ----SDVKFLIDKEERISHLLPTFCQDMIVRVYAKEPH--LVEAVSDAF------ENFQMKTYGEKTQVHSTPEKKKRR 479 (480)
Q Consensus 413 ----~~~~~~l~~~~evs~l~P~~f~e~~irVy~~~~~--~~~~v~~A~------~~~~~~~~~~~~~~~~tp~~~~~~ 479 (480)
+.+.|.+. +..+|.++|..+++..++||+++++ ..+++..+| +++..+++|.+.+...||.||.+.
T Consensus 419 ~~~~~~~s~~~~-K~~vs~~~s~~~~~~~~kv~akk~e~~~~ea~s~~f~~~~ad~~~~~rt~~~~~~~~ltp~kk~~~ 496 (498)
T KOG2681|consen 419 DPYANPESFRIH-KPHVSKYLSTTYVEPLFKVEAKKSEAAAYEADSIPFYWGSADRNFYARTVGNEKTALLTPLKKNVI 496 (498)
T ss_pred cccCCccccccC-CCcccccCCchhhhhhhhhhccchHHhhhhhcccccccchhhhhhhhcccccccchhcchhhcccC
Confidence 45677776 8899999999999999999999887 789999999 777778889999999999999764
No 2
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=100.00 E-value=2.7e-74 Score=601.89 Aligned_cols=386 Identities=32% Similarity=0.445 Sum_probs=279.0
Q ss_pred cccccccCCCCCcccChHHHHHhcCHHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCC
Q 039727 41 YSKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDID 120 (480)
Q Consensus 41 ~~k~i~DpvhG~I~l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~ 120 (480)
++|+|+|||||+|++++++++|||||+|||||+|||||++++||||||||||||||||||||+++++.|..+.. ..++
T Consensus 2 ~~K~ikDpVHg~I~l~~~i~~LIdT~~FQRLRrIkQLG~a~lvyPgAnHTRFeHSLGV~~la~~~~~~l~~~~~--~~~~ 79 (421)
T COG1078 2 MEKVIKDPVHGYIELDELILELIDTPEFQRLRRIKQLGLAYLVYPGANHTRFEHSLGVYHLARRLLEHLEKNSE--EEID 79 (421)
T ss_pred CceEeecCcCceEEcCHHHHHHhCCHHHHHHHHhhhccceeEecCCCcccccchhhHHHHHHHHHHHHHhhccc--cccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999987654 3467
Q ss_pred hHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHH-----------HHHHhcCCCCChhhhhhhh
Q 039727 121 DIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMID-----------YIVDQHYIDIDSGRLDREM 189 (480)
Q Consensus 121 ~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~-----------~il~~~~~~~~~~~~~~~~ 189 (480)
+.+.+.+++||||||||||||||+||.++... ....||+.+.+++. .++++++.+ +. +.
T Consensus 80 ~~~~~~~~~AALLHDIGHgPFSH~fE~~~~~~----~~~~He~~~~~ii~~~~~e~~~~~~~i~~~~~~~--~~----~v 149 (421)
T COG1078 80 EEERLLVRLAALLHDIGHGPFSHTFEYVLDKN----LGFYHEDVTQRIIKNGEIEINLVLNKILDKHGFD--PA----DV 149 (421)
T ss_pred hHHHHHHHHHHHHHccCCCccccchHHHhccc----ccccHHHHHHHHhcCCchhhhhHHhhhhhhcCcC--HH----HH
Confidence 77888999999999999999999999976432 23469999999986 223333332 11 22
Q ss_pred hhccCCCcccccchhhHHhhhhcCCCCccccccccccccccccCCCC-cchHHHhhcceEEECCeEEeecccHHHHHHHH
Q 039727 190 IVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGC-NFQFERLMETMRVMGDEICYRAKDYLTVYKLF 268 (480)
Q Consensus 190 I~~~~~~~~~~~~~~~l~~Iv~n~~~~lDvDrlDYl~RDs~~~Gv~~-~~D~~rLi~~~~v~~~~i~~~~k~~~~i~~~~ 268 (480)
|....+ ....++.+|++ |+|||||||||+||||+||+.+ .+|++||+.++++.+|++|+.+|++.++|+|+
T Consensus 150 ~~~~~~-----~~~~~~~~iis---s~lDaDRmDYL~RDsy~tGv~~g~iD~~Ril~~l~~~~~~lv~~~kgi~aiE~~L 221 (421)
T COG1078 150 IEILYG-----DSNKVLVQIIS---SELDADRMDYLLRDSYYTGVSYGLIDLERILRVLRVVEGRLVISEKGIEAIESFL 221 (421)
T ss_pred HhhcCC-----ccchhhhhhhc---CCcCcchHHHHHHhhhhhcCccCcccHHHHhhheEEeCCEEEEecccHHHHHHHH
Confidence 211111 11567899998 8999999999999999999997 59999999999999999999999999999999
Q ss_pred HHHHhhhhHHhcCchhHHHHHHHHHHHHHhhhhhCCCcCCCChHHHhhCCHH-HHHHHHhCCCcccHHHHHHHHHhhcCC
Q 039727 269 SARADLHRTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDT-IINAILADPRPELKKARDIILRVRRRQ 347 (480)
Q Consensus 269 ~~R~~my~~VY~H~~~~~~e~ml~~al~~a~~~l~is~~~~dp~~yl~LDD~-il~~i~~s~~~~l~~a~~ll~ri~~R~ 347 (480)
.+|++||++||+||++++++.||.+||..|....... .+..++..+||. .+..++.... ...+++.|+.+|.
T Consensus 222 isR~~MY~~VY~H~~~r~~~~mL~~~l~r~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~r~ 294 (421)
T COG1078 222 ISRYLMYQQVYFHPVSRIAEAMLRRALKRAIELYDLD---FDAEEFRRLDDFELLALLRDLLD----LDRELLRRLFNRD 294 (421)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHhcccc---ccccchhccChhHHHHHHHhccc----chHHHHHHHHHHH
Confidence 9999999999999999999999999999997654333 446667778776 4444443321 2578999999999
Q ss_pred cceeccccccChhh---hhhcccCChh---hhhhhhccCCCCCCCCceEEEe--EEeccCCCCCCCCCccc--cCCCcee
Q 039727 348 LYQFCNEYSVPKAK---QEHFKGITAQ---DIVCSQKAGEVTLKEEDVIVSI--VKIDLTRGKKNPLERYD--YCSDVKF 417 (480)
Q Consensus 348 Lyk~v~e~~v~~~~---~~~~~~~~~~---eii~~~~~~~~~l~~~diiv~~--~~id~~~~~~~Pl~~V~--f~~~~~~ 417 (480)
+||........... .+.++..... ...........+..+-+++++. +..-+..+.++|...+. -.+++..
T Consensus 295 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~d~~~p~~~~~~~~~~~~~~~~v~~~~~~~~ 374 (421)
T COG1078 295 LYKRDVILKDLALRFLNRELLKTLDFVQEIRDLESEVAEAKGDPEYYVIVDINIPYDIFRPGSELPESEVNVKLKDGKLK 374 (421)
T ss_pred HhhhhhhhcchhhhhhHHHHhhhhhhchhhhhHHHHhhhhccCccceEEEecCCCCccccccccCcccceEEEcCCCcee
Confidence 99974222111110 0111111110 0111111123344455678877 43333333345544442 2222344
Q ss_pred ecCccccccccC----cCCCCceEEEEEecCCCcHHHHHHHHHH
Q 039727 418 LIDKEERISHLL----PTFCQDMIVRVYAKEPHLVEAVSDAFEN 457 (480)
Q Consensus 418 ~l~~~~evs~l~----P~~f~e~~irVy~~~~~~~~~v~~A~~~ 457 (480)
.+ .+.|+++ ......+.+.+|.. .+..+.++..+..
T Consensus 375 ~l---s~~S~lv~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 414 (421)
T COG1078 375 EL---SEISPLVKALNEARRRRARYGVYKE-FEDVESVKRVLVE 414 (421)
T ss_pred Eh---hhccHHHHhhchhhccceeEeecch-hhhhhhhhhhhhc
Confidence 43 4556555 44456677777764 5555566555433
No 3
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=99.94 E-value=3.8e-26 Score=232.51 Aligned_cols=222 Identities=21% Similarity=0.299 Sum_probs=152.7
Q ss_pred cChHHHHHhcCHHHHhhhcccccCccccccCCCCC--CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHH
Q 039727 55 LDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVH--SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGL 132 (480)
Q Consensus 55 l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~H--tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaL 132 (480)
+...-.+||+|+.||||++++|+ +++||+.| |||+|||||+++|+.+++.|. ++ ..++++|||
T Consensus 29 F~rD~drii~s~~frRL~~ktQv----~~~~~~dh~rtR~~Hsl~V~~iar~~~~~l~--------~~---~~l~~aaaL 93 (336)
T PRK01286 29 FQRDRDRIIHSKAFRRLKHKTQV----FINPEGDHYRTRLTHTLEVAQIARTIARALR--------LN---EDLTEAIAL 93 (336)
T ss_pred hhhhHHHHhCCHHHHhhhcccee----cccCCCcccccHHHHHHHHHHHHHHHHHHhC--------CC---HHHHHHHHH
Confidence 55666899999999999999998 68899999 999999999999999998763 22 247899999
Q ss_pred hhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHh-cCCCCChhhhhhhhhhccCCCccc--ccchhhHHhh
Q 039727 133 LHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQ-HYIDIDSGRLDREMIVTSHASQKS--AKEKQFLYDI 209 (480)
Q Consensus 133 lHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~-~~~~~~~~~~~~~~I~~~~~~~~~--~~~~~~l~~I 209 (480)
||||||+||||++|.++........+|+|+.+|.+|+..+... .|++++.+.+. -|+..++.... .....+-..|
T Consensus 94 ~HDiGh~PfgH~gE~~l~~~~~~~~~f~hn~~s~ri~~~l~~~~~glnLT~~tL~--gilKyp~~~~~~k~~~~tle~~i 171 (336)
T PRK01286 94 GHDLGHTPFGHAGEDALNELMKEYGGFEHNEQSLRVVDKLEKRYDGLNLTWEVRE--GILKHSGPRNAPLGTAATLEGQI 171 (336)
T ss_pred HhcCCCCCCcchHHHHHHHhccccCCCcHHHHHHHHHHHHhhcCCCccCCHHHHh--hHHhCCccccccccCCCchHHHH
Confidence 9999999999999997654332234699999999999987755 47888876664 34443321100 1122333456
Q ss_pred hhcCCCCcccccccccccc---ccccCCCCcch----HHHhh--------cceE--EE----C---------CeEEeecc
Q 039727 210 VANGRNGIDVDKFDYIVRD---SRACGLGCNFQ----FERLM--------ETMR--VM----G---------DEICYRAK 259 (480)
Q Consensus 210 v~n~~~~lDvDrlDYl~RD---s~~~Gv~~~~D----~~rLi--------~~~~--v~----~---------~~i~~~~k 259 (480)
|.- ||.+=|...| +...|+-..-| +..++ ..+. ++ + +-+++..+
T Consensus 172 ve~------ADdIaY~~~DiEDai~~gli~~~~~~~~~~~~~~~~~~~~I~~li~~~i~~~~~~~~~~~~~~~~i~~~~~ 245 (336)
T PRK01286 172 VRL------ADEIAYNNHDIDDGIRAGLITLEDLPEDVRRLLGETHRRRINTLVVDLIKNTQRNLAEGAAAPPLVSFSEE 245 (336)
T ss_pred HHH------HHHHHHHhhhHHHHHHcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCHH
Confidence 552 7888888885 56677643111 11221 1110 00 0 11222222
Q ss_pred cHHHHHHHHHHHHhhhhHHhcCchhHHHHHHHHHHHHHhhhhh
Q 039727 260 DYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHL 302 (480)
Q Consensus 260 ~~~~i~~~~~~R~~my~~VY~H~~~~~~e~ml~~al~~a~~~l 302 (480)
....+=..+..+|++||.|+.+...|.....++...-+.+
T Consensus 246 ---~~~~~~~lk~~~~~~Iy~~~~v~~~e~~~~~iI~~Lfd~f 285 (336)
T PRK01286 246 ---VAEAMKELRRFLFENVYRHPKVKREREKAKRIVQDLFEYY 285 (336)
T ss_pred ---HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2223335788999999999999999988887777655444
No 4
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=99.87 E-value=2.4e-22 Score=209.11 Aligned_cols=125 Identities=23% Similarity=0.294 Sum_probs=97.5
Q ss_pred ChHHHHHhcCHHHHhhhcccccCccccccCCC----CCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHH
Q 039727 56 DPLALQFIDTEEFQRLRDLKQLGLSHLVYPGA----VHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAG 131 (480)
Q Consensus 56 ~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA----~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAa 131 (480)
...-.+||+|+.||||++++| |||++ .||||+|||||+++|+.++..|.............+..+|++||
T Consensus 6 erD~dRii~s~~frRL~~ktQ------v~~~~~~d~~~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~ 79 (381)
T TIGR01353 6 ERDYDRIIHSSAFRRLQDKTQ------VFPLAENDFVRTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETAC 79 (381)
T ss_pred hhhHHHHhCCHHHhhhccCce------eCcCCCCCCCcCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHH
Confidence 345579999999999999999 77776 59999999999999999999886533211111233567999999
Q ss_pred HhhhcCCCCCcccccccchhhccCCC-CCcHHHHHHHHHHHHHHh----cCCCCChhhhh
Q 039727 132 LLHDVGHGPFSHMFEREFLPRVLSGS-NWTHEDMSLKMIDYIVDQ----HYIDIDSGRLD 186 (480)
Q Consensus 132 LlHDiGHgPFSH~~E~~~~~~~~~~~-~~~HE~~s~~ii~~il~~----~~~~~~~~~~~ 186 (480)
|+|||||+||||.+|.++........ +++|+..|.+|+..+... .|++++.+.+.
T Consensus 80 L~HDiGhpPfgH~gE~~l~~~~~~~g~~f~~n~q~~ri~~~Le~~~~~~~GLNLT~~tL~ 139 (381)
T TIGR01353 80 LAHDIGNPPFGHAGERALNDWMREYGPGFEGNAQTFRILTTLEKRRRAKGGLNLTWRTLA 139 (381)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHhcCCCCChHHHHHHHHHHHhhccCCcCCcCCCHHHHH
Confidence 99999999999999987543322222 799999999999987653 46888776554
No 5
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=99.83 E-value=2.8e-20 Score=196.41 Aligned_cols=127 Identities=23% Similarity=0.220 Sum_probs=95.5
Q ss_pred ccChHHHHHhcCHHHHhhhcccccCccccccCCCC----CCchhHHHHHHHHHHHHHHHHHHccCCC-C--CCC-hHHHH
Q 039727 54 YLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAV----HSRFEHSLGVYWLAGTAVQTLKDYQGLE-L--DID-DIDIQ 125 (480)
Q Consensus 54 ~l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~----HtRFeHSLGv~hLA~~~~~~l~~~~~~~-l--~i~-~~d~~ 125 (480)
++.....+||+|+.||||++++| |||.+. ||||+|||||+++|+.++..|...-... . ..+ .....
T Consensus 27 ~F~rD~dRii~s~~frRL~~ktQ------Vfp~~~~d~~~tRltHsleV~~i~r~i~~~l~~~l~~~~~~~~~~~~~~~~ 100 (440)
T PRK01096 27 PFHKDYDRIIFSGSFRRLQRKTQ------VHPLAKNDHIHTRLTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIGA 100 (440)
T ss_pred chhhhHHHHhCCHHHhhhccCce------eCcCCCCCCCcCHhHHHHHHHHHHHHHHHHHHHHHhhhccccccccchHHH
Confidence 35677789999999999999999 788876 9999999999999999988775321100 0 011 12236
Q ss_pred HHHHHHHhhhcCCCCCcccccccchhhccC-C----------------CCCcHHHHHHHHHHHHHH---hcCCCCChhhh
Q 039727 126 TVKLAGLLHDVGHGPFSHMFEREFLPRVLS-G----------------SNWTHEDMSLKMIDYIVD---QHYIDIDSGRL 185 (480)
Q Consensus 126 ~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~-~----------------~~~~HE~~s~~ii~~il~---~~~~~~~~~~~ 185 (480)
+|++|||+|||||+||||.+|.++...... + .+++|...|.+|+..+-. ..|++++-+.+
T Consensus 101 lv~aa~L~HDiGhpPFgH~gE~~i~~~~~~~~~~~~~~~l~~~~~~d~~~FEGNaQslRilt~Le~~~~~~GLNLT~atL 180 (440)
T PRK01096 101 IVQSACLAHDIGNPPFGHFGEDAIREWFQDAAGRGFLDDLSPQERADFLNFEGNAQGFRVLTKLEYHQDDGGMRLTYATL 180 (440)
T ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHhcccchhhhccCHHHHHHhcCCcccccHHHHHHHHcccCCCCcccccHHHH
Confidence 899999999999999999999875432211 1 268999999999987654 24777776555
Q ss_pred h
Q 039727 186 D 186 (480)
Q Consensus 186 ~ 186 (480)
.
T Consensus 181 ~ 181 (440)
T PRK01096 181 G 181 (440)
T ss_pred H
Confidence 3
No 6
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=99.81 E-value=4.7e-20 Score=194.59 Aligned_cols=128 Identities=21% Similarity=0.263 Sum_probs=98.7
Q ss_pred cChHHHHHhcCHHHHhhhcccc-cCccccccCCCCCCchhHHHHHHHHHHHHHHHHH-HccCCCCCCChHHHHHHHHHHH
Q 039727 55 LDPLALQFIDTEEFQRLRDLKQ-LGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLK-DYQGLELDIDDIDIQTVKLAGL 132 (480)
Q Consensus 55 l~~~~~~iIdtp~fQRLR~IkQ-LG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~-~~~~~~l~i~~~d~~~v~iAaL 132 (480)
+...-.+||+|+.||||++++| +|+....|+ ||||.|||||+++|+.+++.|. ...+ ++.....+..++.+|||
T Consensus 25 F~rD~dRii~s~~frRL~~ktQV~~~~~~d~~---~tRltHslev~~i~r~~~~~~~~~~~~-~~~~~~~~~~l~~a~~L 100 (432)
T PRK05318 25 YQRDRARILHSAAFRRLQAKTQVLGVGENDFY---RTRLTHSLEVAQIGTGIVAQLKKEKQP-ELKPLLPSDSLIESLCL 100 (432)
T ss_pred HHHHHHHHhCCHHHhhhcccceeCCCCCCCCC---cChhHHHHHHHHHHHHHHHHHhhcccc-ccccccccHHHHHHHHH
Confidence 5566789999999999999999 777766666 9999999999999999999983 2222 22111113457899999
Q ss_pred hhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHH---hcCCCCChhhhh
Q 039727 133 LHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVD---QHYIDIDSGRLD 186 (480)
Q Consensus 133 lHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~---~~~~~~~~~~~~ 186 (480)
+|||||+||||++|.++...+....+++|...|.+|+..+-. ..|++++-+.+.
T Consensus 101 ~HDiGhpPfgH~gE~~L~~~~~~~ggFEgNaQslRIlt~Le~~~~~~GLNLT~~tL~ 157 (432)
T PRK05318 101 AHDIGHPPFGHGGEVALNYMMRDHGGFEGNGQTFRILTKLEPYTEHFGMNLTRRTLL 157 (432)
T ss_pred HhcCCCCCCcccHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCCCCCccccHHHHH
Confidence 999999999999999754433223479999999999988764 347887766553
No 7
>PRK04926 dgt deoxyguanosinetriphosphate triphosphohydrolase; Provisional
Probab=99.73 E-value=4e-18 Score=181.59 Aligned_cols=89 Identities=28% Similarity=0.402 Sum_probs=72.2
Q ss_pred cChHHHHHhcCHHHHhhhcccccCccccccC----CCCCCchhHHHHHHHHHHHHHHHHHHcc----C-CCCCCC---hH
Q 039727 55 LDPLALQFIDTEEFQRLRDLKQLGLSHLVYP----GAVHSRFEHSLGVYWLAGTAVQTLKDYQ----G-LELDID---DI 122 (480)
Q Consensus 55 l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyP----gA~HtRFeHSLGv~hLA~~~~~~l~~~~----~-~~l~i~---~~ 122 (480)
+...-.+||+|+.||||++++| ||| ++.|||+.|||||+++|+.++..+.... . ...+++ ..
T Consensus 32 ferD~dRIi~S~afrRLq~KtQ------Vfpl~~nd~~rtRltHSleV~~i~r~i~~~i~~~l~~~~~~~~~~~~~~~~~ 105 (503)
T PRK04926 32 FESDRGRIINSAAIRRLQQKTQ------VFPLERNAAVRSRLTHSLEVQQVGRYIAKEILSRLKEQKLLEAYGLDELTGP 105 (503)
T ss_pred HhhhhhHHhCCHHHhhhccCce------eCcCCCCCCeeCHhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc
Confidence 4556689999999999999999 899 8999999999999999998888764321 1 112332 22
Q ss_pred HHHHHHHHHHhhhcCCCCCcccccccc
Q 039727 123 DIQTVKLAGLLHDVGHGPFSHMFEREF 149 (480)
Q Consensus 123 d~~~v~iAaLlHDiGHgPFSH~~E~~~ 149 (480)
...+|++|||+|||||+||||.+|.++
T Consensus 106 ~~~lveaa~L~HDiGhpPFGH~GE~ai 132 (503)
T PRK04926 106 FESIVEMACLMHDIGNPPFGHFGEAAI 132 (503)
T ss_pred hHHHHHHHHHHhcCCCCCCcccHHHHH
Confidence 346899999999999999999999864
No 8
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=99.71 E-value=1.1e-17 Score=175.89 Aligned_cols=116 Identities=24% Similarity=0.342 Sum_probs=94.2
Q ss_pred ccChHHHHHhcCHHHHhhhcccccCccccccCCC----CCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHH
Q 039727 54 YLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGA----VHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKL 129 (480)
Q Consensus 54 ~l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA----~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~i 129 (480)
++...-.+||.|+.|.||.+..| |||.. .|||+.|||||+++|+.++..|. ++ ..++.+
T Consensus 36 ~FqRDrdRIi~S~afRRL~~KtQ------Vf~~~~~Df~~tRltHslev~~~~r~~~~~~~--------~~---~~~~~~ 98 (428)
T PRK03007 36 DFARDRARVLHSAALRRLADKTQ------VVGPREGDTPRTRLTHSLEVAQIGRGIAAGLG--------CD---PDLVDL 98 (428)
T ss_pred chhhhHHHHhCCHHHHhhhccce------eccCCCCCccccHHHHHHHHHHHHHHHHHHhC--------CC---HHHHHH
Confidence 36677789999999999999999 56554 48999999999999999998762 22 358999
Q ss_pred HHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHh--------cCCCCChhhhh
Q 039727 130 AGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQ--------HYIDIDSGRLD 186 (480)
Q Consensus 130 AaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~--------~~~~~~~~~~~ 186 (480)
|||+|||||+||||.+|.++...+....+++|...|.+|+..+-.. .|++++.+.+.
T Consensus 99 ~~l~hd~GhpPfgH~gE~~l~~~~~~~ggFEGNAQslRIlt~LE~~~~~~~~~~~GLNLT~atL~ 163 (428)
T PRK03007 99 AGLAHDIGHPPYGHNGERALDEVAADCGGFEGNAQTLRILTRLEPKVLDPDGRSAGLNLTRASLD 163 (428)
T ss_pred HHHHhcCCCCCCcccHHHHHHHHHHhCCCCchHHHHHHHHHHhccccccccccccCcccCHHHHh
Confidence 9999999999999999997644332334799999999999887643 27888776554
No 9
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=99.35 E-value=1.4e-12 Score=135.68 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=92.1
Q ss_pred hHHHHHhcCHHHHhhhcccccCccccccCC----CCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHH
Q 039727 57 PLALQFIDTEEFQRLRDLKQLGLSHLVYPG----AVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGL 132 (480)
Q Consensus 57 ~~~~~iIdtp~fQRLR~IkQLG~~~~vyPg----A~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaL 132 (480)
..--+||.|..|.||..-.| |||- ...||..|||-|+.+|+-++..|...+. ...-.++..|||
T Consensus 37 rDr~RIihSaAfRRLq~KTQ------Vf~~~~~D~~RTRLTHSLEVAQIgRsia~~l~~~~~------~~~~dL~E~a~L 104 (412)
T COG0232 37 RDRDRIIHSAAFRRLQDKTQ------VFPLHEGDFYRTRLTHSLEVAQIGRSIARELGLDLD------LPFEDLVETACL 104 (412)
T ss_pred ccchhhhhhHHHHhhcccce------ecccccCCcccccchhhHHHHHHHHHHHHHhccccC------CChHHHHHHHHH
Confidence 34469999999999999999 7765 3569999999999999999998765311 122358999999
Q ss_pred hhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHh----cCCCCChhhh
Q 039727 133 LHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQ----HYIDIDSGRL 185 (480)
Q Consensus 133 lHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~----~~~~~~~~~~ 185 (480)
+|||||.||+|..|.++-..+.+..+++|-..+.+|+..+... .|++++.+.+
T Consensus 105 aHDiGhPPFGH~GE~ALn~~m~~~gGFEGNAQ~fRIlT~LE~~~~~~~GLNLT~~TL 161 (412)
T COG0232 105 AHDIGHPPFGHAGEDALNEVMREYGGFEGNAQTFRILTKLEKRYADFGGLNLTRATL 161 (412)
T ss_pred HhcCCCCCCCccHHHHHHHHHHHcCCCcccchhhHHHHHhhhhccCcCcccccHHHH
Confidence 9999999999999998654443445799999999999876543 3566665444
No 10
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=99.03 E-value=1.3e-10 Score=99.76 Aligned_cols=89 Identities=27% Similarity=0.392 Sum_probs=66.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHH
Q 039727 91 RFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMID 170 (480)
Q Consensus 91 RFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~ 170 (480)
||+||++|+.+|..+++.+.. +.+..++.+||||||||+.+.++.++..... .+....|+..|..++.
T Consensus 1 ~~~Hs~~V~~~a~~l~~~~~~---------~~~~~~l~~aaLlHDiGk~~~~~~~~~~~~~---~~~~~~H~~~g~~~~~ 68 (122)
T PF01966_consen 1 RFEHSLRVAELAERLADRLGL---------EEDRELLRIAALLHDIGKIPTPDFIEKKPEE---RGKFYRHEEIGAEILK 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHTH---------HHHHHHHHHHHHHTTTTHHSTHHHHHHHHHH---HCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCC---------chhHHHHHHHHHHHhcCCCCCchHHHHhHhh---hchhhhhHHHHHHHHH
Confidence 799999999999999987532 6778999999999999999999887754100 1223579999999999
Q ss_pred HHHHhcCCCCChhhhhhhhhhccC
Q 039727 171 YIVDQHYIDIDSGRLDREMIVTSH 194 (480)
Q Consensus 171 ~il~~~~~~~~~~~~~~~~I~~~~ 194 (480)
......+.+ .+.+. .+|....
T Consensus 69 ~~~~~~~~~--~~~i~-~~i~~H~ 89 (122)
T PF01966_consen 69 EFLKELGLP--IEIIA-NAIRYHH 89 (122)
T ss_dssp HHHHHHCHC--HHHHH-HHHHHTT
T ss_pred HhhhhcchH--HHHHH-HHHHHhc
Confidence 877766544 23333 4554443
No 11
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=98.77 E-value=1.8e-08 Score=87.04 Aligned_cols=120 Identities=26% Similarity=0.325 Sum_probs=75.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHH
Q 039727 89 HSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKM 168 (480)
Q Consensus 89 HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~i 168 (480)
+++++||+.|+.+|..+.+.+. .++.+..++.+||||||+|+.++.|.+...- ....+.|+..|..+
T Consensus 1 ~~~~~Hs~~v~~~~~~~~~~~~--------~~~~~~~~l~~aaLlHDig~~~~~~~~~~~~-----~~~~~~h~~~g~~~ 67 (145)
T cd00077 1 EHRFEHSLRVAQLARRLAEELG--------LSEEDIELLRLAALLHDIGKPGTPDAITEEE-----SELEKDHAIVGAEI 67 (145)
T ss_pred CchHHHHHHHHHHHHHHHHHhC--------cCHHHHHHHHHHHHHHhcCCccCccccCHHH-----HHHHHhhHHHHHHH
Confidence 3789999999999999887642 2456678999999999999999999872211 11247899999999
Q ss_pred HHHHHHhcCCCCChhhhhhhhhhccCCCccc--------ccchhhHHhhhhcCCCCcccccccccccc
Q 039727 169 IDYIVDQHYIDIDSGRLDREMIVTSHASQKS--------AKEKQFLYDIVANGRNGIDVDKFDYIVRD 228 (480)
Q Consensus 169 i~~il~~~~~~~~~~~~~~~~I~~~~~~~~~--------~~~~~~l~~Iv~n~~~~lDvDrlDYl~RD 228 (480)
+..+..........+.+. ..+......... ......+..++. .+|++|+..|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~AD~~~~~~~~ 128 (145)
T cd00077 68 LRELLLEEVIKLIDELIL-AVDASHHERLDGLGYPDGLKGEEITLEARIVK------LADRLDALRRD 128 (145)
T ss_pred HHHhhhcccccccHHHHH-HHHHHcccCCCCCCCCCCCCcccCCHHHHHHH------HHHHHHHHhcC
Confidence 876522222222222221 111111110000 011234556665 69999999997
No 12
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=98.53 E-value=1.4e-07 Score=87.11 Aligned_cols=122 Identities=16% Similarity=0.293 Sum_probs=71.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCC-CCCccccccc---chh-hc-cCCCCCcHH
Q 039727 89 HSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGH-GPFSHMFERE---FLP-RV-LSGSNWTHE 162 (480)
Q Consensus 89 HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGH-gPFSH~~E~~---~~~-~~-~~~~~~~HE 162 (480)
-.||+||+||+.+|+.+++.+ +.+ .....+||||||||. .|..++.+.. -.+ .. ....+..|.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~--------~~d---~e~a~~AGLLHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 75 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEAN--------KLD---SKKAEIAGAYHDLAKFLPKEQLKQIAKREKMPAHLLYPSPKLLHA 75 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHh--------CcC---HHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCchhhcccccccHH
Confidence 379999999999999999864 222 235889999999998 3332222100 000 00 011245699
Q ss_pred HHHHHHHHHHHHhcCCCCChhhhhhhhhhccCCCccccc---chhhHHhhhhcCC-CCccccccccccc
Q 039727 163 DMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAK---EKQFLYDIVANGR-NGIDVDKFDYIVR 227 (480)
Q Consensus 163 ~~s~~ii~~il~~~~~~~~~~~~~~~~I~~~~~~~~~~~---~~~~l~~Iv~n~~-~~lDvDrlDYl~R 227 (480)
++|..+++.. +++ .++.+. +.|.....+..... .--++.+.+++.+ ++.++|+++++.-
T Consensus 76 ~vGa~ll~~w---~~~--~~~~i~-~aI~~H~~~~~~~~~l~~iV~lAD~i~~~~~~~~~~~~~~~~~~ 138 (158)
T TIGR00488 76 YVGAYILKRE---FGV--QDEDIL-DAIRNHTSGPPGMSLLDMIIYVADKLEPNRGAGIEIDELRKLAK 138 (158)
T ss_pred HHHHHHHHHH---hCC--CcHHHH-HHHHHhCCCCCCCCHHHHHHHhHHHHhhcccccccHHHHHHHHH
Confidence 9999988731 122 133333 34544332211111 1134566777776 6888888888854
No 13
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=98.39 E-value=6.2e-07 Score=75.87 Aligned_cols=117 Identities=25% Similarity=0.243 Sum_probs=74.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHH
Q 039727 88 VHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLK 167 (480)
Q Consensus 88 ~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ 167 (480)
.+++++||++|+.++..+.+.+. . .+...+.+||||||+|+.+.++.+.... + ....|+..+..
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~--------~--~~~~~~~~a~LlHDig~~~~~~~~~~~~-~-----~~~~h~~~~~~ 65 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELG--------L--LDIELLLLAALLHDIGKPGTPDSFLVKT-S-----VLEDHHFIGAE 65 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcC--------h--HHHHHHHHHHHHHcccCccCCHHHhcCc-c-----HHHHhHHHHHH
Confidence 56889999999999998887642 1 3456799999999999998887665320 0 23679999998
Q ss_pred HHHHHHHhcCCCCChhhhhh--hhhhccCCCccc--ccchhhHHhhhhcCCCCcccccccccccccccc
Q 039727 168 MIDYIVDQHYIDIDSGRLDR--EMIVTSHASQKS--AKEKQFLYDIVANGRNGIDVDKFDYIVRDSRAC 232 (480)
Q Consensus 168 ii~~il~~~~~~~~~~~~~~--~~I~~~~~~~~~--~~~~~~l~~Iv~n~~~~lDvDrlDYl~RDs~~~ 232 (480)
++.. ++ +++..... ..|......... .....-+..|+. .+|++|++.++..+.
T Consensus 66 ~~~~----~~--~~~~~~~~~~~~i~~h~~~~~~~~~~~~~~~~~il~------~aD~~~~~~~~~~~~ 122 (124)
T smart00471 66 ILLE----EE--EPRILEEILATAILSHHERPDGLRGEPITLEARIVK------VADRLDALRRDRRYR 122 (124)
T ss_pred HHHh----CC--CCHHHHHHHhhHHHHhccccCCCCCCcCCHHHHHHH------HHHHHHHHhcCCCCC
Confidence 8875 22 22222110 013222221110 112233556665 699999998876554
No 14
>PRK10119 putative hydrolase; Provisional
Probab=98.24 E-value=3.4e-06 Score=82.63 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=76.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHH
Q 039727 87 AVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSL 166 (480)
Q Consensus 87 A~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~ 166 (480)
..|. |.|..-|..+|.++++. + ..|..+|.+||||||||..|-.|- ....|...+.
T Consensus 23 ~~HD-~~Hi~RV~~lA~~Ia~~-------e----~~D~~vv~lAAlLHDv~d~~k~~~------------~~~~~~~~~a 78 (231)
T PRK10119 23 AAHD-ICHFRRVWATAQKLAAD-------D----DVDMLVVLTACYFHDIVSLAKNHP------------QRHRSSILAA 78 (231)
T ss_pred CccC-hHHHHHHHHHHHHHHHh-------c----CCCHHHHHHHHHHhhcchhhhcCc------------cccchhhHHH
Confidence 4566 99999999999998754 1 135678999999999986433221 1124677788
Q ss_pred HHHHHHHHhcCCCCChhhhhh--hhhhccCCCcccccchhhHHhhhhcCCCCccccccccc-----cccccccCC
Q 039727 167 KMIDYIVDQHYIDIDSGRLDR--EMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYI-----VRDSRACGL 234 (480)
Q Consensus 167 ~ii~~il~~~~~~~~~~~~~~--~~I~~~~~~~~~~~~~~~l~~Iv~n~~~~lDvDrlDYl-----~RDs~~~Gv 234 (480)
.++..+|.+...+++++.+.. ..|...... .+..+.+...+||. ||||||.| .|=..+.|.
T Consensus 79 ~~a~~~L~~~~~g~~~~~i~~V~~iI~~~sfs-~~~~p~tlE~kIVQ------DADRLDAiGAIGIaR~f~~gG~ 146 (231)
T PRK10119 79 EETRRILREDFPDFPAEKIEAVCHAIEAHSFS-AQIAPLTLEAKIVQ------DADRLEALGAIGLARVFAVSGA 146 (231)
T ss_pred HHHHHHHHHcccCcCHHHHHHHHHHHHHcCCC-CCCCCCCHHHhhhh------hHHHHHhcchHHHHHHHHHHHH
Confidence 888888887312345665554 455544321 11233456678997 99999986 454444443
No 15
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=97.89 E-value=3.7e-05 Score=75.34 Aligned_cols=112 Identities=18% Similarity=0.214 Sum_probs=73.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
..|.||+.|+.+|..+.+.- .+..+. |.+.+.+||||||||=. +. +. ......||..|....
T Consensus 55 ~~~~Hs~RV~~~a~~ia~~e----~~~~~~---D~evl~lAALLHDIG~~------~~-~~----~~~~~~fe~~ga~~A 116 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAIARDQ----FPEWDL---SDETWFLTCLLHDIGTT------DE-NM----TATKMSFEFYGGILA 116 (228)
T ss_pred hhhHHHHHHHHHHHHHHHHh----ccccCC---CHHHHHHHHHHHhhccc------cc-cC----CcccCCHHHHHHHHH
Confidence 45999999999998877631 111223 34679999999999953 11 11 123568999999999
Q ss_pred HHHHHhc-CCCCChhhhhh--hhhhccCCCcccccchhhHHhhhhcCCCCcccccccccccc
Q 039727 170 DYIVDQH-YIDIDSGRLDR--EMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRD 228 (480)
Q Consensus 170 ~~il~~~-~~~~~~~~~~~--~~I~~~~~~~~~~~~~~~l~~Iv~n~~~~lDvDrlDYl~RD 228 (480)
..+|..+ |.+ .+.++. +.|.....+ ........+..||. |+|++|-+-.+
T Consensus 117 ~~~L~~~~G~~--~~~~~~V~~aI~~H~~~-~~~~~~~~e~~lvq------~Ad~lDa~Ga~ 169 (228)
T TIGR03401 117 LDVLKEQTGAN--QDQAEAVAEAIIRHQDL-GVDGTITTLGQLLQ------LATIFDNVGAN 169 (228)
T ss_pred HHHHHHCCCCC--HHHHHHHHHHHHHHhCC-CCCCCcCHHHHHHH------HHHHHhHccCC
Confidence 9999887 654 554443 455554321 11222345678887 79999987533
No 16
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.83 E-value=2.1e-05 Score=74.02 Aligned_cols=69 Identities=28% Similarity=0.385 Sum_probs=48.0
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHH
Q 039727 84 YPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHED 163 (480)
Q Consensus 84 yPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~ 163 (480)
|-|=.-|+.+|+|.|+++|.+- +-+ .-+.+|||||||||..-.+--+. ...|..++|+.
T Consensus 19 y~Ge~Vs~leH~LQ~A~lA~~~------------Gad----~elvvAALLHDIGhll~~~~~~~-----~~~g~~~~He~ 77 (179)
T TIGR03276 19 YGGEAVSQLEHALQCAQLAEAA------------GAD----DELIVAAFLHDIGHLLADEGATP-----MGRGGDDHHEE 77 (179)
T ss_pred cCCCCCcHHHHHHHHHHHHHHc------------CCC----HHHHHHHHHHhcchhhhcccccc-----cccCCCccHHH
Confidence 4355669999999999999862 122 23689999999999753322111 11255789999
Q ss_pred HHHHHHHHHH
Q 039727 164 MSLKMIDYIV 173 (480)
Q Consensus 164 ~s~~ii~~il 173 (480)
++..+++..+
T Consensus 78 iga~~Lr~~F 87 (179)
T TIGR03276 78 LAADYLRELF 87 (179)
T ss_pred HHHHHHHHHc
Confidence 9999987543
No 17
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=97.37 E-value=0.00029 Score=68.84 Aligned_cols=62 Identities=24% Similarity=0.383 Sum_probs=47.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
++++||+-|++||..|... .+. |..+++.||||||||++ -+. ...++ |...|..+.
T Consensus 36 ~~l~H~~~Va~lA~~Ia~~--------~g~---D~~l~~~aaLLHDIg~~-----~~~-------~~~~~-h~~~gae~a 91 (222)
T COG1418 36 HVLEHSLRVAYLAYRIAEE--------EGV---DPDLALRAALLHDIGKA-----IDH-------EPGGS-HAEIGAEIA 91 (222)
T ss_pred hHHHHHHHHHHHHHHHHHH--------cCC---CHHHHHHHHHHHhhccc-----ccc-------CCccc-hHHHHHHHH
Confidence 7899999999999999875 233 56789999999999985 111 12234 999999998
Q ss_pred HHHHHh
Q 039727 170 DYIVDQ 175 (480)
Q Consensus 170 ~~il~~ 175 (480)
+.....
T Consensus 92 ~~~~~~ 97 (222)
T COG1418 92 RKFLED 97 (222)
T ss_pred HHHccc
Confidence 866543
No 18
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.27 E-value=0.00025 Score=66.98 Aligned_cols=38 Identities=39% Similarity=0.581 Sum_probs=31.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCC
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGH 138 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGH 138 (480)
.||+|||||+..|.++++.. +.+ ...+.+|||+||++-
T Consensus 17 kR~~H~l~V~~~A~~LA~~y--------~~d---~~kA~~AgilHD~aK 54 (187)
T COG1713 17 KRFEHCLGVAETAIELAEAY--------GLD---PEKAYLAGILHDIAK 54 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHh--------CCC---HHHHHHHHHHHHHHh
Confidence 59999999999999999863 333 234899999999985
No 19
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=97.13 E-value=0.00097 Score=62.05 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=44.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
+.++||+.|+.+|..+++.+.... + ..|...+.+||||||||-... .++.|...|..++
T Consensus 13 ~~~~Hs~~Va~~A~~ia~~~~~~~-----~-~~d~~~l~~aaLLHDIGK~~~---------------~~~~H~~~G~~iL 71 (164)
T TIGR00295 13 SVRRHCLAVARVAMELAENIRKKG-----H-EVDMDLVLKGALLHDIGRART---------------HGFEHFVKGAEIL 71 (164)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccc-----c-cCCHHHHHHHHHHhcCCcccC---------------CCCCHHHHHHHHH
Confidence 469999999999999998753211 1 125668999999999997421 1368999998766
Q ss_pred H
Q 039727 170 D 170 (480)
Q Consensus 170 ~ 170 (480)
+
T Consensus 72 ~ 72 (164)
T TIGR00295 72 R 72 (164)
T ss_pred H
Confidence 5
No 20
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=97.04 E-value=0.0021 Score=66.41 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=41.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
..++||+.|+.+|..+++.+ ++ |...+.+||||||||.... ...+|...+..++
T Consensus 187 ~l~~Hs~rVa~lA~~LA~~~--------~~---D~~ll~aAALLHDIGK~k~---------------~~~~H~~~Ga~iL 240 (339)
T PRK12703 187 LLIRHVKTVYKLAMRIADCI--------NA---DRRLVAAGALLHDIGRTKT---------------NGIDHAVAGAEIL 240 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHc--------CC---CHHHHHHHHHHHhcccccc---------------cCCCHHHHHHHHH
Confidence 36899999999999998763 23 3457889999999998521 1246988887665
Q ss_pred H
Q 039727 170 D 170 (480)
Q Consensus 170 ~ 170 (480)
+
T Consensus 241 ~ 241 (339)
T PRK12703 241 R 241 (339)
T ss_pred H
Confidence 4
No 21
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=97.04 E-value=0.0025 Score=65.40 Aligned_cols=139 Identities=22% Similarity=0.275 Sum_probs=84.2
Q ss_pred hcCHHHHhhh-c-ccccCccccccCCC--CCCc-----hhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHh
Q 039727 63 IDTEEFQRLR-D-LKQLGLSHLVYPGA--VHSR-----FEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLL 133 (480)
Q Consensus 63 Idtp~fQRLR-~-IkQLG~~~~vyPgA--~HtR-----FeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLl 133 (480)
|.+|..++|= . .+.++-.++.+|.| .|.- .|||+.|+.+|..++... + .-++.++.++|||
T Consensus 123 i~~~~l~~l~~~~~~~~~~~f~~~PAa~~~HHay~GGLleHtl~v~~~~~~l~~~y----~------~~n~dll~agalL 192 (314)
T PRK13480 123 MENPNIQRITRHLLKKYQEEFLDYPAATKNHHEFVSGLAYHVVSMLRLAKSICDLY----P------SLNKDLLYAGIIL 192 (314)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCChHhhcccccccHHHHHHHHHHHHHHHHHHhc----c------ccCHHHHHHHHHH
Confidence 4455555532 1 23345566778987 3433 799999999999987641 1 1234679999999
Q ss_pred hhcCC-CCCccc--ccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCCCChhhhhh--hhhhccCCCcc--cc-cchhh
Q 039727 134 HDVGH-GPFSHM--FEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDR--EMIVTSHASQK--SA-KEKQF 205 (480)
Q Consensus 134 HDiGH-gPFSH~--~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~~~~~~~~~--~~I~~~~~~~~--~~-~~~~~ 205 (480)
||||- .=||+. +|.- ..|.-..|-.++..++.....+.++ +++.+.. .+|+.+.+... .+ .++..
T Consensus 193 HDiGKi~E~~~~~~~~yT-----~eG~LlGHi~lg~~~i~~~~~~l~~--~~e~~~~L~H~ILSHHG~~E~GSPv~P~t~ 265 (314)
T PRK13480 193 HDLGKVIELSGPVSTTYT-----LEGNLLGHISIMVNEIAKAADELQI--DGEEVLILQHMVLSHHGKAEWGSPKPPLVK 265 (314)
T ss_pred HHhhhHHHhcCCCccCcc-----ccCEeccHHHHHHHHHHHHHHHcCC--CHHHHHHHHhhhhccCCccccCCCCCCCCH
Confidence 99995 111211 1211 1244467999999999988887655 3443322 78888876321 11 23333
Q ss_pred HHhhhhcCCCCcccccccc
Q 039727 206 LYDIVANGRNGIDVDKFDY 224 (480)
Q Consensus 206 l~~Iv~n~~~~lDvDrlDY 224 (480)
-..||+. +|+||-
T Consensus 266 EA~iLh~------~D~lDA 278 (314)
T PRK13480 266 EAEILHY------IDNIDA 278 (314)
T ss_pred HHHHHHH------HHhhhh
Confidence 4556663 666664
No 22
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=96.78 E-value=0.0017 Score=67.36 Aligned_cols=74 Identities=18% Similarity=0.112 Sum_probs=47.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhh----ccCCCCCcHH
Q 039727 87 AVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPR----VLSGSNWTHE 162 (480)
Q Consensus 87 A~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~----~~~~~~~~HE 162 (480)
-...|+.||++|+.+|..+++.+ ++++ ..+.+||||||||=.-....+...+... ........|.
T Consensus 193 ~~~~~~~HSl~VA~~A~~LA~~~--------g~d~---~~a~~AGLLHDIGK~~~~~~~~~~~~~~~~~~~~~~~~~~H~ 261 (342)
T PRK07152 193 LDEYRYKHCLRVAQLAAELAKKN--------NLDP---KKAYYAGLYHDITKEWDEEKHRKFLKKYLKDVKNLPWYVLHQ 261 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh--------CcCH---HHHHHHHHHHHhhccCCHHHHHHHHHhcCCchhhcchHHHhH
Confidence 34579999999999999999864 3443 5678999999999852222221111100 0001135688
Q ss_pred HHHHHHHHH
Q 039727 163 DMSLKMIDY 171 (480)
Q Consensus 163 ~~s~~ii~~ 171 (480)
++|..+++.
T Consensus 262 ~~Ga~ll~~ 270 (342)
T PRK07152 262 YVGALWLKH 270 (342)
T ss_pred HHHHHHHHH
Confidence 888887754
No 23
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=96.78 E-value=0.0015 Score=60.04 Aligned_cols=68 Identities=26% Similarity=0.422 Sum_probs=45.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCC--CCCcccccccchhhccCCCCCcH
Q 039727 84 YPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGH--GPFSHMFEREFLPRVLSGSNWTH 161 (480)
Q Consensus 84 yPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGH--gPFSH~~E~~~~~~~~~~~~~~H 161 (480)
|-|-.-|+.||+|-.+.||.+- +-+ ..+..||||||||| ++|+|.-=.. ......|
T Consensus 24 y~ge~VTq~eHaLQ~AtlAerd------------Ga~----~~lVaaALLHDiGhl~~~~g~~ps~~------~i~d~~h 81 (186)
T COG4341 24 YSGEPVTQLEHALQCATLAERD------------GAD----TALVAAALLHDIGHLYADYGHTPSAA------GIDDPFH 81 (186)
T ss_pred cccCcchhhhhHHHHhHHHHhc------------CCc----HHHHHHHHHHhHHHHhhhcCCCcccc------ccchhHH
Confidence 4444569999999999999862 222 24678999999999 4565543221 1123348
Q ss_pred HHHHHHHHHHHH
Q 039727 162 EDMSLKMIDYIV 173 (480)
Q Consensus 162 E~~s~~ii~~il 173 (480)
|+.+..+++.+.
T Consensus 82 ee~~~~vL~~~f 93 (186)
T COG4341 82 EEFATPVLRKLF 93 (186)
T ss_pred HHHhHHHHHHhC
Confidence 998888877544
No 24
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.70 E-value=0.0044 Score=67.72 Aligned_cols=74 Identities=27% Similarity=0.381 Sum_probs=50.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
+.++||+.|+.+|..++..+ +++. ..+..||||||||.. +.|. ...+|-.+|..++
T Consensus 329 ~~l~Hs~~VA~lA~~LA~~l--------gld~---~~a~~AGLLHDIGK~-~~~e------------~~~~H~~~Ga~ll 384 (514)
T TIGR03319 329 NVLQHSIEVAHLAGIMAAEL--------GEDV---KLAKRAGLLHDIGKA-VDHE------------VEGSHVEIGAELA 384 (514)
T ss_pred cHHHHHHHHHHHHHHHHHHh--------CcCH---HHHHHHHHHHhcCcc-cchh------------hcccHHHHHHHHH
Confidence 46899999999999999864 4443 346789999999985 2221 1247999999887
Q ss_pred HHHHHhcCCCCChhhhhhhhhhccCC
Q 039727 170 DYIVDQHYIDIDSGRLDREMIVTSHA 195 (480)
Q Consensus 170 ~~il~~~~~~~~~~~~~~~~I~~~~~ 195 (480)
.. ++. ++ .+. ..|..+.+
T Consensus 385 ~~----~~~--~~-~V~-~aI~~HH~ 402 (514)
T TIGR03319 385 KK----YKE--SP-EVV-NAIAAHHG 402 (514)
T ss_pred HH----cCC--CH-HHH-HHHHHhCC
Confidence 63 332 23 333 46666554
No 25
>PRK12705 hypothetical protein; Provisional
Probab=96.58 E-value=0.0058 Score=66.41 Aligned_cols=88 Identities=26% Similarity=0.383 Sum_probs=56.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHH
Q 039727 89 HSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKM 168 (480)
Q Consensus 89 HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~i 168 (480)
.+-++||+.|+.+|..++.. ++++. ..+..||||||||.. .+.. ...+|..+|..+
T Consensus 322 qnvl~HSl~VA~lA~~LA~~--------lGld~---d~a~~AGLLHDIGK~-----ie~e--------~~~~H~~iGaeL 377 (508)
T PRK12705 322 QNVLSHSLEVAHLAGIIAAE--------IGLDP---ALAKRAGLLHDIGKS-----IDRE--------SDGNHVEIGAEL 377 (508)
T ss_pred chHHHHHHHHHHHHHHHHHH--------cCcCH---HHHHHHHHHHHcCCc-----chhh--------hcccHHHHHHHH
Confidence 34689999999999999876 35544 345679999999995 2221 135799999888
Q ss_pred HHHHHHhcCCCCChhhhhhhhhhccCCCcccccchhhHHhhhh
Q 039727 169 IDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVA 211 (480)
Q Consensus 169 i~~il~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~l~~Iv~ 211 (480)
++. ++ +++. +. ..|..+.++. .+......||+
T Consensus 378 lkk----~~--~p~~-Vv-~aI~~HHe~~---~~~~~~a~IVa 409 (508)
T PRK12705 378 ARK----FN--EPDE-VI-NAIASHHNKV---NPETVYSVLVQ 409 (508)
T ss_pred HHh----cC--CCHH-HH-HHHHHhCCCC---CCCCHHHHHHH
Confidence 753 33 3333 33 5666655432 22334556665
No 26
>PRK00106 hypothetical protein; Provisional
Probab=96.58 E-value=0.0046 Score=67.56 Aligned_cols=75 Identities=24% Similarity=0.385 Sum_probs=52.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHH
Q 039727 89 HSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKM 168 (480)
Q Consensus 89 HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~i 168 (480)
.+-++||++|+.+|+.++..+ ++ |...+.+||||||||-. ++..+ ..+|-.+|..+
T Consensus 349 qnl~~HSv~VA~lA~~lA~~l--------gl---d~e~a~~AGLLHDIGK~-----v~~e~--------~g~Ha~iGa~l 404 (535)
T PRK00106 349 QNVLRHSVEVGKLAGILAGEL--------GE---NVALARRAGFLHDMGKA-----IDREV--------EGSHVEIGMEF 404 (535)
T ss_pred CcHHHHHHHHHHHHHHHHHHh--------CC---CHHHHHHHHHHHhccCc-----cCccc--------cCChHHHHHHH
Confidence 356999999999999998764 33 34678999999999986 22211 23799999988
Q ss_pred HHHHHHhcCCCCChhhhhhhhhhccCC
Q 039727 169 IDYIVDQHYIDIDSGRLDREMIVTSHA 195 (480)
Q Consensus 169 i~~il~~~~~~~~~~~~~~~~I~~~~~ 195 (480)
++ .++. +++ +. ..|..+.+
T Consensus 405 l~----~~~~--~~~-v~-~aI~~HH~ 423 (535)
T PRK00106 405 AR----KYKE--HPV-VV-NTIASHHG 423 (535)
T ss_pred HH----HcCC--CHH-HH-HHHHHhCC
Confidence 75 3442 333 33 56666554
No 27
>PRK12704 phosphodiesterase; Provisional
Probab=96.57 E-value=0.0064 Score=66.57 Aligned_cols=87 Identities=25% Similarity=0.319 Sum_probs=56.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
+-+.||+.|+++|..++.. ++++.. .+..||||||||..| .|- ...+|-.+|..++
T Consensus 335 n~l~Hs~~Va~lA~~lA~~--------lgld~~---~a~~AgLLHDIGK~~-~~e------------~~~~H~~iGa~il 390 (520)
T PRK12704 335 NVLQHSIEVAHLAGLMAAE--------LGLDVK---LAKRAGLLHDIGKAL-DHE------------VEGSHVEIGAELA 390 (520)
T ss_pred cHhHHHHHHHHHHHHHHHH--------hCcCHH---HHHHHHHHHccCcCc-ccc------------ccCCHHHHHHHHH
Confidence 4579999999999999876 345433 367999999999975 221 1257999999887
Q ss_pred HHHHHhcCCCCChhhhhhhhhhccCCCcccccchhhHHhhhh
Q 039727 170 DYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVA 211 (480)
Q Consensus 170 ~~il~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~l~~Iv~ 211 (480)
+. ++. ++ .+. ..|..+.+. ..+...+..||.
T Consensus 391 ~~----~~~--~~-~v~-~aI~~HHe~---~~~~~~~a~IV~ 421 (520)
T PRK12704 391 KK----YKE--SP-VVI-NAIAAHHGD---EEPTSIEAVLVA 421 (520)
T ss_pred HH----cCC--CH-HHH-HHHHHcCCC---CCCCCHHHHHHH
Confidence 63 332 22 333 566665542 122344566776
No 28
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=96.43 E-value=0.0051 Score=48.72 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=41.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
..++|++.|+.+|..+++.+ +++. ..+.+||||||+|-.--.. .. ....|...|..++
T Consensus 4 ~~~~H~~~v~~~a~~la~~~--------~~~~---~~l~~AalLHDiG~~~~~~---~~--------~~~~H~~~g~~~l 61 (80)
T TIGR00277 4 NVLQHSLEVAKLAEALAREL--------GLDV---ELARRGALLHDIGKPITRE---GV--------IFESHAVVGAEIA 61 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHc--------CCCH---HHHHHHHHHHccCCcccch---HH--------HHHchHHHHHHHH
Confidence 45799999999999988753 3333 3588999999999742110 00 1246888888876
Q ss_pred H
Q 039727 170 D 170 (480)
Q Consensus 170 ~ 170 (480)
+
T Consensus 62 ~ 62 (80)
T TIGR00277 62 R 62 (80)
T ss_pred H
Confidence 5
No 29
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=96.22 E-value=0.0077 Score=55.59 Aligned_cols=81 Identities=21% Similarity=0.175 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhh--ccCCCCCcHHHHHHHHH
Q 039727 92 FEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPR--VLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 92 FeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~--~~~~~~~~HE~~s~~ii 169 (480)
.+|++.|+.+|..+.. +..+....++ .....++.+||++||||=. +-.|+....+. ........|+.+|..++
T Consensus 2 ~~H~~~v~~~a~~l~~-~~~~~~~~~~--~~~~~~~~~~~~lHDiGK~--~~~FQ~~~~~~~~~~~~~~~~H~~~s~~~~ 76 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKN-LDIVIADLIG--KLLRELLDLLALLHDIGKI--NPGFQAKLMKAYKRGRRVASRHSLLSAKLL 76 (177)
T ss_pred HHHHHHHHHHHHHHhc-ccHHHHHHHh--hHHHHHHHHHHHHccCccC--CHHHHHHhhcccccccCCCCCHHHHHHHHH
Confidence 3799999999987641 1110000111 2356789999999999973 22233322100 01234578999999999
Q ss_pred HHHHHhcC
Q 039727 170 DYIVDQHY 177 (480)
Q Consensus 170 ~~il~~~~ 177 (480)
..++.+.+
T Consensus 77 ~~~~~~~~ 84 (177)
T TIGR01596 77 DALLIKKG 84 (177)
T ss_pred HHHHHHcc
Confidence 98876554
No 30
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.21 E-value=0.016 Score=67.27 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=57.5
Q ss_pred HHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCC--------CCChHHHHHHHHHHHhhhcC
Q 039727 66 EEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLEL--------DIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 66 p~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l--------~i~~~d~~~v~iAaLlHDiG 137 (480)
|+|-+++..-|-.. |..| |=++|+|=|..-+..+...-. ..+. .+... .++.+||||||||
T Consensus 431 PE~~~i~~~~Q~d~-yH~y-----tVd~Htl~~l~~l~~~~~~~~---~~~~~~~~~~~~~l~~~--~lL~lAaLlHDIG 499 (869)
T PRK04374 431 PAFASVSGRMQFDL-FHVY-----TVDQHTLMVLRNIALFAAGRA---DERFSIAHEVWPRLRKP--ELLLLAGLFHDIA 499 (869)
T ss_pred hhHHHHhccccccC-ccCC-----cHHHHHHHHHHHHHHHhcccc---ccccccHHHHHhccCCc--cHHHHHHHHHhcc
Confidence 66666666655432 1123 558999988876654432100 0011 12222 3789999999999
Q ss_pred CCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCCCChhhhh
Q 039727 138 HGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLD 186 (480)
Q Consensus 138 HgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~~~~~~~~ 186 (480)
-|- +..|++.|+.|++.++...+++ .++++
T Consensus 500 Kg~-----------------~~dHs~~Ga~~a~~i~~Rl~l~--~~~~~ 529 (869)
T PRK04374 500 KGR-----------------GGDHSELGAVDARAFCLAHRLS--EGDTE 529 (869)
T ss_pred CCC-----------------CCChHHHhHHHHHHHHHHcCCC--HHHHH
Confidence 861 1279999999999999988764 54443
No 31
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=96.14 E-value=0.008 Score=59.22 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=40.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCccccc
Q 039727 89 HSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFE 146 (480)
Q Consensus 89 HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E 146 (480)
|+ |.|..-|++.+..++....- .-.+++.|+.++-+||||||+||.=++-.|.
T Consensus 2 HN-~~Ha~dV~q~~~~ll~~~~~----~~~l~~~e~~alliAal~HDv~HpG~~N~fl 54 (237)
T PF00233_consen 2 HN-FRHAADVLQFVYYLLSNGGL----REYLSPLEIFALLIAALCHDVDHPGVNNAFL 54 (237)
T ss_dssp SS-HHHHHHHHHHHHHHHHHGGG----GTTS-HHHHHHHHHHHHHTTTT-SSSCHHHH
T ss_pred CC-HHHHHHHHHHHHHHHHccCc----cccCCHHHHHHHHHHHHHhcCCCCccccchh
Confidence 56 89999999999998875322 1247899999999999999999976666654
No 32
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=95.93 E-value=0.018 Score=65.00 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=48.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
|=++|+|=|...+..+... +.+ ..++.+||||||||-|- +..|++.|..|+
T Consensus 380 tVDeHTL~~l~~~~~~~~~----------~~~--~~lL~LAALlHDIGKg~-----------------g~dHs~~GA~~A 430 (693)
T PRK00227 380 TIDEHSLNTVANCALETVT----------VAR--PDLLLLGALYHDIGKGY-----------------PRPHEQVGAEMV 430 (693)
T ss_pred cHHHHHHHHHHHHHHhhhc----------cCc--cHHHHHHHHHHhhcCCC-----------------CCChhHHHHHHH
Confidence 5578999888876655322 122 24678999999999863 237999999999
Q ss_pred HHHHHhcCCCCChhhhh
Q 039727 170 DYIVDQHYIDIDSGRLD 186 (480)
Q Consensus 170 ~~il~~~~~~~~~~~~~ 186 (480)
+.+++..+++ +++.+
T Consensus 431 ~~i~~RLgl~--~~~~e 445 (693)
T PRK00227 431 ARAARRMGLN--LRDRA 445 (693)
T ss_pred HHHHHHcCcC--HHHHH
Confidence 9999988764 54443
No 33
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=95.66 E-value=0.015 Score=60.51 Aligned_cols=39 Identities=38% Similarity=0.635 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCC
Q 039727 92 FEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGH 138 (480)
Q Consensus 92 FeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGH 138 (480)
+.||.-|+.+|..+.+. +++++.++..+.+||||||||-
T Consensus 150 ~~Hs~~va~~a~~ia~~--------lgl~~~~i~~l~~aalLHDIGK 188 (344)
T COG2206 150 YGHSVRVAELAEAIAKK--------LGLSEEKIEELALAGLLHDIGK 188 (344)
T ss_pred HHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhhccc
Confidence 89999999999999886 6799999999999999999995
No 34
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=95.54 E-value=0.026 Score=60.08 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=43.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
+=++|++-|+..+..+.. . ..++.||||||+|-+-= .+.. ......||..|..++
T Consensus 227 dv~~Htl~~l~~~~~l~~--------~--------l~lr~AaLlHDlGK~~t---~~~~------~~~~~gH~~~Ga~~a 281 (409)
T PRK10885 227 DTGIHTLMVLDQAAKLSP--------S--------LDVRFAALCHDLGKGLT---PPEE------WPRHHGHEPRGVKLV 281 (409)
T ss_pred cHHHHHHHHHHHHHhcCC--------C--------HHHHHHHHhccccCCCC---Cccc------CcccCchhHhHHHHH
Confidence 347898877765543211 0 25899999999998621 1110 112357999999999
Q ss_pred HHHHHhcCC
Q 039727 170 DYIVDQHYI 178 (480)
Q Consensus 170 ~~il~~~~~ 178 (480)
+.+++...+
T Consensus 282 ~~i~~RLk~ 290 (409)
T PRK10885 282 EQLCQRLRV 290 (409)
T ss_pred HHHHHHcCc
Confidence 999998665
No 35
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.45 E-value=0.033 Score=64.00 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=44.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHH
Q 039727 91 RFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMID 170 (480)
Q Consensus 91 RFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~ 170 (480)
=.+|+|=|..-+..+... +.+. .++++||||||||-| .+..|++.|..|++
T Consensus 421 Vd~Htl~~l~~~~~~~~~----------~~~~--~lL~lAaLlHDiGKg-----------------~~~~Hs~~Ga~~a~ 471 (774)
T PRK03381 421 VDRHLVETAVRAAALTRR----------VARP--DLLLLGALLHDIGKG-----------------RGGDHSVVGAELAR 471 (774)
T ss_pred HHHHHHHHHHHHHHHHhc----------cCCH--HHHHHHHHHHhhcCC-----------------CCCChHHHHHHHHH
Confidence 357999887766554432 2222 357999999999985 12379999999999
Q ss_pred HHHHhcCCC
Q 039727 171 YIVDQHYID 179 (480)
Q Consensus 171 ~il~~~~~~ 179 (480)
.+++..+++
T Consensus 472 ~i~~RL~l~ 480 (774)
T PRK03381 472 QIGARLGLS 480 (774)
T ss_pred HHHHHcCcC
Confidence 999988764
No 36
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=95.06 E-value=0.052 Score=57.80 Aligned_cols=97 Identities=9% Similarity=0.073 Sum_probs=59.9
Q ss_pred HHHHHhcCHHHHh-hhcccccCccccccCCC------------CC---CchhHHHHHHHHHHHHHHHHHHccCCCCCCCh
Q 039727 58 LALQFIDTEEFQR-LRDLKQLGLSHLVYPGA------------VH---SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDD 121 (480)
Q Consensus 58 ~~~~iIdtp~fQR-LR~IkQLG~~~~vyPgA------------~H---tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~ 121 (480)
...+++.++.-.+ ++-+.++|.-..+||.- .| .-++|++-|...+.. ++.
T Consensus 180 El~k~L~~~~p~~~~~~L~~~g~L~~~~PEl~~~~g~~q~~~~~~~~~d~~~htl~~l~~~~~--------------~~~ 245 (417)
T PRK13298 180 ETEKALKTDNPHVYFQVLYECNALKFLFPEIDFLYEKPYFLNSFFKKFNLGNYILMGLSKISK--------------LTK 245 (417)
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCHHHhCcchHHHcCCCCCccccCCchhHHHHHHHHHHHHHh--------------cCC
Confidence 3456666655555 66677788877778751 11 235566544433321 111
Q ss_pred HHHHHHHHHHHhhhcCCCC-CcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCC
Q 039727 122 IDIQTVKLAGLLHDVGHGP-FSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYI 178 (480)
Q Consensus 122 ~d~~~v~iAaLlHDiGHgP-FSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~ 178 (480)
-..++.||||||+|-++ +... +. .+....||+.|..+++.+++...+
T Consensus 246 --~l~lR~AaLlHDiGK~~t~~~~-~~-------~~~~~gHe~~G~~~a~~i~~RLk~ 293 (417)
T PRK13298 246 --DIDIRFSYLCQFLGSMIPINQI-KR-------NYKKIFFDKYAASLIKNLCKRFKI 293 (417)
T ss_pred --CHHHHHHHHHhhhcCCCCCCcc-CC-------CCcccChhHhHHHHHHHHHHHhCC
Confidence 12589999999999863 2121 11 123468999999999999987654
No 37
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.83 E-value=0.055 Score=63.04 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=66.9
Q ss_pred hHHHHHhcCHHHH--hhhcccccCccccccCCC-----------CC--CchhHHHHHHHHHHHHHHHHHHccCCCCCC--
Q 039727 57 PLALQFIDTEEFQ--RLRDLKQLGLSHLVYPGA-----------VH--SRFEHSLGVYWLAGTAVQTLKDYQGLELDI-- 119 (480)
Q Consensus 57 ~~~~~iIdtp~fQ--RLR~IkQLG~~~~vyPgA-----------~H--tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i-- 119 (480)
....+|+.+|.-. =|+...+.|....++|.- -| |=++|++=|...+..+....... +.++
T Consensus 413 ~~f~~iL~~~~~~~~~l~~m~~~GlL~~~iPe~~~i~~~~Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~---~~~~~~ 489 (884)
T PRK05007 413 KLFMEILRHPGAVSRALLPMHRHSVLSAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVLLKLESFADEETRQ---RHPLCV 489 (884)
T ss_pred HHHHHHHcCCCchHHHHHHHHHhCCHHHhCchHhheeeccccCccccCcHhHHHHHHHHHHHHHhcccccc---cchHHH
Confidence 3445566554322 266666666666666642 22 33499999998887765321100 0000
Q ss_pred ----ChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCCCChhhhh
Q 039727 120 ----DDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLD 186 (480)
Q Consensus 120 ----~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~~~~~~~~ 186 (480)
.-.+..++.+||||||||-|- +.+|++.|+.+++.++...+++ +++++
T Consensus 490 ~~~~~~~~~~lL~lAaLlHDIGKg~-----------------~~dHs~~Ga~~a~~il~rl~l~--~~~~~ 541 (884)
T PRK05007 490 ELYPRLPKKELLLLAALFHDIAKGR-----------------GGDHSILGAQDALEFAELHGLN--SRETQ 541 (884)
T ss_pred HHHHhcCChhHHHHHHHHHhhcCCC-----------------CCChHHHHHHHHHHHHHHcCCC--HHHHH
Confidence 001235789999999999851 2379999999999999987764 54443
No 38
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=94.76 E-value=0.037 Score=53.99 Aligned_cols=44 Identities=25% Similarity=0.164 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCCCCCChHH--------HHHHHHHHHhhhcCCC
Q 039727 92 FEHSLGVYWLAGTAVQTLKDYQGLELDIDDID--------IQTVKLAGLLHDVGHG 139 (480)
Q Consensus 92 FeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d--------~~~v~iAaLlHDiGHg 139 (480)
++|||.|+..|.++.+...- + -+.+.++ ..++-+||||||||..
T Consensus 69 l~HtLev~~~a~~l~~~y~~--p--~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK~ 120 (218)
T TIGR03760 69 LDHTLEVTAAAVRLSKGYLL--P--PGAAPEEQAAQSDAWNAAVFYAALLHDLGKL 120 (218)
T ss_pred HHHHHHHHHHHHHHHhhcCC--C--CCCCHHHHHHhhHHHHHHHHHHHHHHhhhhh
Confidence 79999999999998865311 1 1222221 3479999999999974
No 39
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.74 E-value=0.073 Score=61.84 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=46.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCC-----CCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLE-----LDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDM 164 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~-----l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~ 164 (480)
|=++|+|=|..-+..+...-.....+. .++. ...++.+||||||||-|- +..|++.
T Consensus 436 tVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~lAaLlHDIGKG~-----------------~~dHs~~ 496 (854)
T PRK01759 436 TVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLS--DRTLLYIAALFHDIAKGR-----------------GGDHAEL 496 (854)
T ss_pred cHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcC--CHHHHHHHHHHHhhcCCC-----------------CCChhHH
Confidence 557899988876665532110000000 0111 245789999999999851 1279999
Q ss_pred HHHHHHHHHHhcCCC
Q 039727 165 SLKMIDYIVDQHYID 179 (480)
Q Consensus 165 s~~ii~~il~~~~~~ 179 (480)
|+.|++.+++..+++
T Consensus 497 Ga~~a~~i~~rl~l~ 511 (854)
T PRK01759 497 GAVDMRQFAQQHGFD 511 (854)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999987764
No 40
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.63 E-value=0.072 Score=62.15 Aligned_cols=105 Identities=16% Similarity=0.243 Sum_probs=63.6
Q ss_pred HHHHHhcCHH--HHhhhcccccCccccccCC-----------CCC--CchhHHHHHHHHHHHHHHHHHHccCCCC-----
Q 039727 58 LALQFIDTEE--FQRLRDLKQLGLSHLVYPG-----------AVH--SRFEHSLGVYWLAGTAVQTLKDYQGLEL----- 117 (480)
Q Consensus 58 ~~~~iIdtp~--fQRLR~IkQLG~~~~vyPg-----------A~H--tRFeHSLGv~hLA~~~~~~l~~~~~~~l----- 117 (480)
...+|+.+|. +.=|+...++|.-..++|. .-| |=++|+|=|..-+..+...-. ..+.
T Consensus 413 ~f~~iL~~~~~~~~~l~~M~~~GvL~~~iPe~~~i~~~~Q~d~yH~ytVdeHtl~~v~~l~~l~~~~~---~~~~p~~~~ 489 (895)
T PRK00275 413 LFIELFKCPIGIHRNLRRMNRYGILGRYLPEFGHIVGQMQHDLFHIYTVDAHTLNLIKNLRKLRYPEV---SEKFPLASK 489 (895)
T ss_pred HHHHHHcCCCchHHHHHHHHHcCCHHHhCchHhhEeeeccCcccccCcHHHHHHHHHHHHHHhhcccc---cccCchHHH
Confidence 3445555543 2225555555555555553 122 558899988877666532110 0000
Q ss_pred ---CCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCCCChhhhh
Q 039727 118 ---DIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLD 186 (480)
Q Consensus 118 ---~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~~~~~~~~ 186 (480)
.++. ..++.+||||||||-|- +.+|++.|+.|++.++...+++ .++++
T Consensus 490 l~~~l~~--~~lL~lAaLlHDIGKg~-----------------~~~Hs~~Ga~~a~~i~~rl~l~--~~~~~ 540 (895)
T PRK00275 490 LMGRLPK--PELLYIAGLYHDIGKGR-----------------GGDHSELGAVDAEAFCQRHQLP--AWDTR 540 (895)
T ss_pred HHHhcCC--HHHHHHHHHHHhhhcCC-----------------CCCHHHHHHHHHHHHHHHcCCC--HHHHH
Confidence 1111 24789999999999861 1279999999999999988764 44443
No 41
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.59 E-value=0.067 Score=62.75 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=58.9
Q ss_pred hhcccccCccccccCCC-----------CC--CchhHHHHHHHHHHHHHHHHHHc-cCC--C--CCCChHHHHHHHHHHH
Q 039727 71 LRDLKQLGLSHLVYPGA-----------VH--SRFEHSLGVYWLAGTAVQTLKDY-QGL--E--LDIDDIDIQTVKLAGL 132 (480)
Q Consensus 71 LR~IkQLG~~~~vyPgA-----------~H--tRFeHSLGv~hLA~~~~~~l~~~-~~~--~--l~i~~~d~~~v~iAaL 132 (480)
|+.+.++|.-..++|-- -| |=++|+|=|..-+..+...-... .|. + -.+. ...++.+|||
T Consensus 461 l~~m~~~GvL~~~iPef~~i~~~~Q~d~~H~ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~lAaL 538 (931)
T PRK05092 461 LRRMNEAGVLGRFIPDFGRIVAMMQFNMYHHYTVDEHTIRAIGVLAEIERGELADEHPLASELMPKIE--SRRALYVAVL 538 (931)
T ss_pred HHHHHHhCChHHhcccHHhcccccccccceeccHhHHHHHHHHHHHHHhcccccccchhHHHHHHhcC--CHHHHHHHHH
Confidence 56666677766666651 11 33589998887766654210000 000 0 0121 2357899999
Q ss_pred hhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCCCChhhh
Q 039727 133 LHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRL 185 (480)
Q Consensus 133 lHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~~~~~~~ 185 (480)
|||||.| .+.+|++.|+.+++.+++..+++ .++.
T Consensus 539 lHDIGKg-----------------~~~dHs~~Ga~~a~~~~~rl~l~--~~~~ 572 (931)
T PRK05092 539 LHDIAKG-----------------RPEDHSIAGARIARRLCPRLGLS--PAET 572 (931)
T ss_pred HHHhhcC-----------------CCCCHHHHHHHHHHHHHHHcCCC--HHHH
Confidence 9999986 12379999999999999987764 4444
No 42
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.53 E-value=0.077 Score=61.61 Aligned_cols=102 Identities=23% Similarity=0.284 Sum_probs=62.4
Q ss_pred HHHHhcCH--HHHhhhcccccCccccccCCC-----------CC--CchhHHHHHHHHHHHHHHHHHHc-cCC--C--CC
Q 039727 59 ALQFIDTE--EFQRLRDLKQLGLSHLVYPGA-----------VH--SRFEHSLGVYWLAGTAVQTLKDY-QGL--E--LD 118 (480)
Q Consensus 59 ~~~iIdtp--~fQRLR~IkQLG~~~~vyPgA-----------~H--tRFeHSLGv~hLA~~~~~~l~~~-~~~--~--l~ 118 (480)
..+|+.+| ...=|+.+.+.|.-..++|-- -| |=++|++=|+..+..+....... .+. + -+
T Consensus 382 f~~iL~~~~~~~~~l~~m~~~gvL~~~iPe~~~i~~~~Q~~~~H~~tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 461 (850)
T TIGR01693 382 FLELLTSGNGTVRALRAMNRAGVLGRFLPEWGRIVGQMQFDLFHVYTVDEHTLRTVVHLAPFARGRLAREHPLASELMPK 461 (850)
T ss_pred HHHHHcCCCchHHHHHHHHHhCCHHHhCchHhhheeccccCceeecchhHHHHHHHHHHHHHhccccccccccHHHHHhc
Confidence 34455543 233355555666665566541 22 33589999988887764321000 000 0 01
Q ss_pred CChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCC
Q 039727 119 IDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYID 179 (480)
Q Consensus 119 i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~ 179 (480)
++ +..++.+||||||||.|- +..|+..|..|++.+++..+++
T Consensus 462 ~~--~~~~L~lAaLlHDiGKg~-----------------~~~H~~~Ga~~a~~~~~rl~l~ 503 (850)
T TIGR01693 462 IE--DPELLYLAALLHDIGKGR-----------------GGDHSVLGAEDARDVCPRLGLD 503 (850)
T ss_pred cC--CHHHHHHHHHHHHHhcCC-----------------CCCHHHHHHHHHHHHHHHcCCC
Confidence 22 245789999999999861 1369999999999999987764
No 43
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.08 E-value=0.099 Score=60.76 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=66.1
Q ss_pred hHHHHHhcCHH--HHhhhcccccCccccccCCC-----------CC--CchhHHHHHHHHHHHHHHHHHHccCCCCCCC-
Q 039727 57 PLALQFIDTEE--FQRLRDLKQLGLSHLVYPGA-----------VH--SRFEHSLGVYWLAGTAVQTLKDYQGLELDID- 120 (480)
Q Consensus 57 ~~~~~iIdtp~--fQRLR~IkQLG~~~~vyPgA-----------~H--tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~- 120 (480)
....+|+.+|. +.=|+...+.|.-..++|.- -| |=++|++=|...+..+...- ...+.++.
T Consensus 392 ~ef~~iL~~~~~~~~~l~~m~~~GlL~~~lPe~~~i~~~~Q~~~~H~ytVd~Htl~~v~~l~~~~~~~---~~~~~p~~~ 468 (856)
T PRK03059 392 ALFMQILQQPRGITHALRLMNQTSVLGRYLPNFRRIVGQMQHDLFHVYTVDQHILMVLRNLRRFAMAE---HAHEYPFCS 468 (856)
T ss_pred HHHHHHHcCCCchHHHHHHHHHhCCHHHhCchHhheeeeecccccccCcHhHHHHHHHHHHHHhhccc---cccccchHH
Confidence 34456666644 23366666666666666641 12 55789998887775542210 00000000
Q ss_pred -----hHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCCCChhhhh
Q 039727 121 -----DIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLD 186 (480)
Q Consensus 121 -----~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~~~~~~~~ 186 (480)
-....++.+||||||||-| .+..|++.|+.+.+.++...+++ +++++
T Consensus 469 ~~~~~~~~~~lL~LAaLlHDIGKg-----------------~~~~Hs~~GA~~A~~il~rl~l~--~~~~~ 520 (856)
T PRK03059 469 QLIANFDRPWLLYVAALFHDIAKG-----------------RGGDHSTLGAVDARRFCRQHGLA--REDAE 520 (856)
T ss_pred HHHHhcCChhHHHHHHHHHhhccC-----------------CCCCchHHHHHHHHHHHHHcCCC--HHHHH
Confidence 0123578999999999985 11379999999999999987764 54443
No 44
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=93.65 E-value=0.13 Score=49.26 Aligned_cols=64 Identities=28% Similarity=0.374 Sum_probs=49.8
Q ss_pred HHHHhhhcccccCcccc-ccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcC
Q 039727 66 EEFQRLRDLKQLGLSHL-VYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 66 p~fQRLR~IkQLG~~~~-vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiG 137 (480)
+..+||+.|.--|.... ++++ +|--+||.+|+.+|..+...+.. .+. .++ ..-+...||.||++
T Consensus 10 ~~~~~Lk~i~R~gw~~~g~~~~--eSvaeHs~~va~la~~la~~~~~-~~~--~vn---~~k~~~~AL~HD~~ 74 (193)
T COG1896 10 ALLSRLKDIPRTGWLLRGIWNP--ESVAEHSFRVAILALLLADILNA-KGG--EVN---PEKVALMALVHDLP 74 (193)
T ss_pred HHHHHHHhhhccchhhcCCCCc--ccHHHHHHHHHHHHHHHHHHHHh-ccc--ccC---HHHHHHHHHhcccH
Confidence 78899999999887754 3444 89999999999999999988766 331 233 34577889999987
No 45
>KOG3689 consensus Cyclic nucleotide phosphodiesterase [Signal transduction mechanisms]
Probab=92.34 E-value=0.18 Score=56.71 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=44.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHH--HHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCccccc
Q 039727 87 AVHSRFEHSLGVYWLAGTAVQT--LKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFE 146 (480)
Q Consensus 87 A~HtRFeHSLGv~hLA~~~~~~--l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E 146 (480)
+-|+ |-|..-|++....++.. |. .-+++-|+.++.+|||||||+|.=++-.|-
T Consensus 429 ~YHN-w~HAf~VaQ~m~~lL~t~~L~------~~fTdlEiLalliAalcHDlDHrGtNN~f~ 483 (707)
T KOG3689|consen 429 PYHN-WRHAFDVAQAMFALLKTPKLQ------NKFTDLEILALLIAALCHDLDHRGTNNSYL 483 (707)
T ss_pred cchh-HHHHHHHHHHHHHHHhchhHH------hhcChHHHHHHHHHHHHccCCCCCCCcHHH
Confidence 5666 99999999999988875 32 246888999999999999999987777764
No 46
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=91.58 E-value=0.41 Score=51.83 Aligned_cols=71 Identities=28% Similarity=0.273 Sum_probs=44.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
+=|+||+-|+.-+..+- . + +. ..++++||||||+|-+ -+=.++.. .......|+..|..++
T Consensus 258 ~v~~Htl~vl~~~~~l~----~----~----~~-~~~l~lAaLLHDiGK~-~t~~~~~~-----g~~~f~gH~~~Ga~~a 318 (466)
T TIGR02692 258 DVYEHSLTVLRQAIDLE----D----D----GP-DLVLRWAALLHDIGKP-ATRRFEPD-----GRVSFHHHEVVGAKMV 318 (466)
T ss_pred cHHHHHHHHHHHHHhcc----c----c----cc-CHHHHHHHHHhhccCC-CCcccccC-----CCcccCcHHHHHHHHH
Confidence 67899998876554321 0 0 01 1368999999999964 21111110 0012246999999999
Q ss_pred HHHHHhcCCC
Q 039727 170 DYIVDQHYID 179 (480)
Q Consensus 170 ~~il~~~~~~ 179 (480)
+.++...+++
T Consensus 319 ~~iL~rLk~s 328 (466)
T TIGR02692 319 RKRMRALKYS 328 (466)
T ss_pred HHHHHHhCCC
Confidence 9999876653
No 47
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=91.04 E-value=0.35 Score=52.80 Aligned_cols=44 Identities=20% Similarity=0.202 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCC
Q 039727 92 FEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHG 139 (480)
Q Consensus 92 FeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHg 139 (480)
-+|.-.|+.+|..+++.|+... ++++.+..++++||+|||||..
T Consensus 324 ~~ha~~v~~~a~~Lf~~l~~~~----~l~~~~~~LL~~Aa~LhdiG~~ 367 (496)
T PRK11031 324 TEQAQRVAKLADNFLQQVENEW----HLEPRSRELLISACQLHEIGLS 367 (496)
T ss_pred HHHHHHHHHHHHHHHHhhhhhc----CCChHHHHHHHHHHHHHhcCCc
Confidence 4799999999999999887532 4578889999999999999963
No 48
>PRK10854 exopolyphosphatase; Provisional
Probab=90.64 E-value=0.64 Score=51.01 Aligned_cols=45 Identities=18% Similarity=0.072 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCC
Q 039727 92 FEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGH 138 (480)
Q Consensus 92 FeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGH 138 (480)
-+|.--|+.+|..+++.|+...+ ...++.+..++++||+|||||.
T Consensus 330 ~~ha~~V~~~a~~LFd~l~~~h~--~~~~~~~~~LL~~Aa~LhdiG~ 374 (513)
T PRK10854 330 REQARRVLETTMQLYEQWREQNP--KLAHPQLEALLKWAAMLHEVGL 374 (513)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhc--ccCCHHHHHHHHHHHHHHhcCC
Confidence 47999999999999999876421 0126788899999999999996
No 49
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=0.57 Score=53.32 Aligned_cols=90 Identities=22% Similarity=0.327 Sum_probs=63.0
Q ss_pred HHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHH-ccCC--CC--CCChHHHHHHHHHHHhhhcCCCC
Q 039727 66 EEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKD-YQGL--EL--DIDDIDIQTVKLAGLLHDVGHGP 140 (480)
Q Consensus 66 p~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~-~~~~--~l--~i~~~d~~~v~iAaLlHDiGHgP 140 (480)
|+|.+....-|-.+-+ +| |==||+|-|+--...+...-.. ..|. .+ .++ +..++.+|||+||||-|
T Consensus 428 Pew~~Ivg~MQfdlfH-~Y-----TVDeH~lr~v~~l~~~a~~~~~~~hPl~~~l~~~~~--~~elLylAaLfHDIaKG- 498 (867)
T COG2844 428 PEWGKIVGLMQFDLFH-IY-----TVDEHTLRVVLKLARFARGEARHEHPLASQLMPRLE--KRELLYLAALFHDIAKG- 498 (867)
T ss_pred ccHHhhhcccccCcce-ec-----chhHHHHHHHHHHHHhhcccccccCccHHhhccCCC--ChhHHHHHHHHHHhhcC-
Confidence 7788887777755432 44 5579999988777776543211 1110 00 133 45689999999999975
Q ss_pred CcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCCC
Q 039727 141 FSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDI 180 (480)
Q Consensus 141 FSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~~ 180 (480)
.+-+|++.|..+...+...+|++.
T Consensus 499 ----------------RggDHs~lGA~~a~~fc~~hGL~~ 522 (867)
T COG2844 499 ----------------RGGDHSILGAEDARRFCERHGLNS 522 (867)
T ss_pred ----------------CCCchHHhhHHHHHHHHHHcCCCH
Confidence 356899999999999999998763
No 50
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=88.57 E-value=0.53 Score=48.84 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=38.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCC
Q 039727 88 VHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHG 139 (480)
Q Consensus 88 ~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHg 139 (480)
.|..-+|+.-|.++++.+++. +++|+.++..+..||.|||||--
T Consensus 183 ~~etg~H~~Rv~~~~~~lAe~--------lgLse~~v~~i~~AapLHDIGKv 226 (360)
T COG3437 183 DYETGDHLERVAQYSELLAEL--------LGLSEEEVDLIKKAAPLHDIGKV 226 (360)
T ss_pred ccchhhHHHHHHHHHHHHHHH--------hCCCHHHHHHHHhccchhhcccc
Confidence 445568999999999999986 57999999999999999999973
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=88.36 E-value=0.57 Score=54.11 Aligned_cols=52 Identities=25% Similarity=0.258 Sum_probs=37.9
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccc
Q 039727 85 PGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFER 147 (480)
Q Consensus 85 PgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~ 147 (480)
.+..+|=-||..+|+.+|..++..+ ++ ......+.+|||+||+|- ||-.|..
T Consensus 670 ~~~~q~L~eHl~~va~lA~~fa~~~--------gl-~~~~~~~~laGllHDlGK--~~~~FQ~ 721 (844)
T TIGR02621 670 SGDEVALSDHLDNVFEVAKNFVAKL--------GL-GDLDKAVRQAARLHDLGK--QRPRFQT 721 (844)
T ss_pred CCCcEEHHHHHHHHHHHHHHHHHHc--------Cc-hHHHHHHHHHHHhccccc--CCHHHHH
Confidence 3455666899999999999998864 33 222345789999999997 3545554
No 52
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=88.15 E-value=1.4 Score=43.14 Aligned_cols=93 Identities=26% Similarity=0.229 Sum_probs=54.2
Q ss_pred HHhcCHHHH---hhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCC-----CCChHH-HHHHHHHH
Q 039727 61 QFIDTEEFQ---RLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLEL-----DIDDID-IQTVKLAG 131 (480)
Q Consensus 61 ~iIdtp~fQ---RLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l-----~i~~~d-~~~v~iAa 131 (480)
.++..++.| +..++--.|---|.=.|+.|.|- |+.-|-.+.+-|.+..-..- ..+.+| ...+.+||
T Consensus 30 ~l~~D~ev~A~l~maNv~av~RlgYNDHG~vHa~I-----va~~Al~i~~lL~~~Gv~ps~v~dg~gd~eD~~vivlLga 104 (269)
T COG3294 30 LLLNDEEVQAYLKMANVMAVGRLGYNDHGPVHARI-----VANSALAIYKLLLEKGVKPSGVTDGVGDEEDSPVIVLLGA 104 (269)
T ss_pred HHhcCHHHHHHHHHhhhhhhhhhcccCCCceeeee-----ccchHHHHHHHHHhcCCCcccccccCCchhhhhHHHHHHH
Confidence 444555544 33343333333355688899883 56666677777766431111 123333 46789999
Q ss_pred HhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHH
Q 039727 132 LLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVD 174 (480)
Q Consensus 132 LlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~ 174 (480)
.||||||. . ..-.||..|.-+...|++
T Consensus 105 ~LHDIGns-----V-----------HRd~H~~~sa~La~~Ild 131 (269)
T COG3294 105 YLHDIGNS-----V-----------HRDDHELYSAVLALDILD 131 (269)
T ss_pred HHHhccch-----h-----------ccccHHHHhHHHhHHHHH
Confidence 99999984 1 124788877666555444
No 53
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=87.37 E-value=1.3 Score=49.64 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=32.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCC
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHG 139 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHg 139 (480)
| |.||+=|+.||...++++.. +..++|+||.-||||-.
T Consensus 490 T-y~HSvmVAnLAEaAa~~IGa-----------n~lLaRVgayYHDIGK~ 527 (700)
T COG1480 490 T-YQHSVMVANLAEAAAEEIGA-----------NSLLARVGAYYHDIGKM 527 (700)
T ss_pred C-ccchhhHHHHHHHHHHHhCC-----------chHHHHHHHHHhhcccc
Confidence 6 99999999999999987632 24689999999999953
No 54
>PRK03826 5'-nucleotidase; Provisional
Probab=87.04 E-value=1.5 Score=42.13 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=42.4
Q ss_pred HHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcC
Q 039727 67 EFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 67 ~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiG 137 (480)
...|||+|+--|.+. .+-..|=-|||..|+-+|..+...-.+..+. ++ |..-+...||+||++
T Consensus 8 ~~~rLK~i~Rw~~~~---~~~~EsVAeHs~~vAliA~~La~i~~~~~~~--~v---d~~rv~~~aL~HDl~ 70 (195)
T PRK03826 8 HLSRLKLINRWPLMR---NVRTENVSEHSLQVAMVAHALAVIKNRKFGG--NL---NAERIALLAMYHDAS 70 (195)
T ss_pred HHHhhccccccCCCC---CCCCCccHHHHHHHHHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHhcchH
Confidence 468999999988643 2344566899999999998765321122221 23 244577789999997
No 55
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=86.68 E-value=0.095 Score=49.39 Aligned_cols=48 Identities=33% Similarity=0.468 Sum_probs=36.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccc
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFER 147 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~ 147 (480)
.-+.||+.++.+|..+++.+ +... ...+-+|||+||+|-....+.+..
T Consensus 94 ~~~~~s~~~a~~a~~la~~~--------~~~~--~~~a~~~gLL~~iG~l~l~~~~~~ 141 (196)
T PF08668_consen 94 RFWRHSLAAAAIARRLAREL--------GFDD--PDEAYLAGLLHDIGKLLLLSLFPE 141 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------TCCH--HHHHHHHHHHTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHc--------CCCC--HHHHHHHHHHHHHhHHHHHHHhHH
Confidence 34789999999999998864 2222 356899999999998877765544
No 56
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=80.55 E-value=1.9 Score=40.15 Aligned_cols=59 Identities=31% Similarity=0.313 Sum_probs=35.4
Q ss_pred HhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcC
Q 039727 69 QRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 69 QRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiG 137 (480)
.||++|+--|....-=+ -.=|=-|||..|+-+|..+...+.. .+ |..-+...||+||++
T Consensus 2 ~~Lk~i~R~gw~~~g~~-~~EsVAeHS~~vA~~a~~la~~~~~------~~---d~~k~~~~aL~HDl~ 60 (165)
T PF13023_consen 2 DRLKFIKRTGWVLRGRP-RPESVAEHSWRVALIALLLAEEAGP------DL---DIEKVVKMALFHDLP 60 (165)
T ss_dssp HHCCCSB-HHHHHCTSS-SG-BHHHHHHHHHHHHHHHHHHHH-------HC----HHHHHHHHHHTTTT
T ss_pred cccCcccCCCcccCCCC-CCccHHHHHHHHHHHHHHHhHHhcc------cC---CHHHHHHHHhhccch
Confidence 47888877664322100 1224479999999999888776531 12 233344455999998
No 57
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=65.53 E-value=6.6 Score=35.67 Aligned_cols=32 Identities=34% Similarity=0.455 Sum_probs=21.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhc
Q 039727 89 HSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDV 136 (480)
Q Consensus 89 HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDi 136 (480)
..=+.|.++|+.+... ++.+ .-+.+||||||+
T Consensus 18 ~py~~H~~~va~~l~~------------~~~d----~~~i~aalLHD~ 49 (153)
T PF13328_consen 18 EPYISHPLEVAEILAE------------LGLD----EETIAAALLHDV 49 (153)
T ss_dssp -BTTHHHHHHHHHHHT------------S-------HHHHHHHHHTTH
T ss_pred CcHHHHHHHHHHHHHH------------cCCC----HHHHhhheeecH
Confidence 3448999999987643 2322 237899999996
No 58
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=64.90 E-value=5.5 Score=41.27 Aligned_cols=43 Identities=28% Similarity=0.173 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCCCCCCh--------HHHHHHHHHHHhhhcCC
Q 039727 92 FEHSLGVYWLAGTAVQTLKDYQGLELDIDD--------IDIQTVKLAGLLHDVGH 138 (480)
Q Consensus 92 FeHSLGv~hLA~~~~~~l~~~~~~~l~i~~--------~d~~~v~iAaLlHDiGH 138 (480)
|.|+|-|+..|-++.+... .+ .+-+. .-.-.+-+||||||||-
T Consensus 68 l~h~LEva~~Alrl~~~~~--lp--~~a~pEe~~~q~~~W~~avf~AALlhdlgk 118 (327)
T PF07514_consen 68 LDHTLEVAAYALRLRQGYM--LP--PGATPEEQAAQEPAWRYAVFYAALLHDLGK 118 (327)
T ss_pred HHHHHHHHHHHHHHhcCee--cC--CCCChhhHHHHHhhhHHHHHHHHHHhccCc
Confidence 8999999999988765321 01 11122 22357889999999995
No 59
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=62.21 E-value=8.5 Score=45.60 Aligned_cols=48 Identities=35% Similarity=0.653 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhcCCCCCcccccccchhhccCC----CCCcHHHHHHHHHHHHHH
Q 039727 124 IQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSG----SNWTHEDMSLKMIDYIVD 174 (480)
Q Consensus 124 ~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~----~~~~HE~~s~~ii~~il~ 174 (480)
..+..+|||+||+|-. |=.|..-+.+.. .+ ....||-+|.++++.++.
T Consensus 113 ~lLa~~AgL~HD~GKA--~~~FQ~kL~~~~-~~~~~~d~~RHEWvSlrLfqafv~ 164 (1110)
T TIGR02562 113 SLLAGLAGLLHDIGKA--SVHFQNKLSPEM-NGPKIADDYRHEWVSLRLFQAFVE 164 (1110)
T ss_pred HHHHHHHHHhhccccc--hHHHHHhhcCcc-CCCccCCCccHHHHHHHHHHHHhC
Confidence 3678999999999974 222332221110 12 357899999999998774
No 60
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=56.98 E-value=6.3 Score=40.02 Aligned_cols=50 Identities=28% Similarity=0.443 Sum_probs=33.1
Q ss_pred cccccCCC--CCCch-----hHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCC
Q 039727 80 SHLVYPGA--VHSRF-----EHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHG 139 (480)
Q Consensus 80 ~~~vyPgA--~HtRF-----eHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHg 139 (480)
.++-||+| +|.+| +|++-|+.++...++.. ..-++.++.++++|||+|++
T Consensus 124 ~f~~~paa~~~Hh~~~~gLa~ht~~~~~l~~~~~~~y----------~~~n~dli~Ag~ilHdigK~ 180 (287)
T COG3481 124 VFYKYPAATQNHHAFEGGLAEHTLTVLELYKRISEIY----------PTVNRELIYAGAILHDIGKV 180 (287)
T ss_pred HHhccchhhhhhhhhhcchHHHHHHHHHHHHHHHhhc----------ccccHHHHHHHHHHhccccc
Confidence 56678886 56554 36666666666655421 11235689999999999974
No 61
>COG2254 Predicted HD superfamily hydrolase, possibly a nuclease [DNA replication, recombination, and repair]
Probab=53.90 E-value=18 Score=35.67 Aligned_cols=54 Identities=24% Similarity=0.242 Sum_probs=37.3
Q ss_pred CCC-hHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcC
Q 039727 118 DID-DIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHY 177 (480)
Q Consensus 118 ~i~-~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~ 177 (480)
+++ +...+.|.+|.-+||+|-+ ++. +...........||-.|..+.-.++++++
T Consensus 44 ~ld~e~v~~~vk~AiilHDiGKa-----~~~-yQ~~~~~~~~~~HE~~Say~~~~~~e~~~ 98 (230)
T COG2254 44 KLDIEKVEELVKLAIILHDIGKA-----SEA-YQKGRGNDCFYYHELVSAYFAYEVLEPLG 98 (230)
T ss_pred hhhHHHHHHHHHHeeEEeechhh-----HHH-HHHhcccCcccchhhHHHHHHHHHHhhcc
Confidence 444 3445789999999999985 443 44333222256799999999777777654
No 62
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=52.32 E-value=12 Score=33.24 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=29.9
Q ss_pred hhcccccCccccccCCCCCCchhHHHHHHHHHHHHH
Q 039727 71 LRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAV 106 (480)
Q Consensus 71 LR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~ 106 (480)
|+.+.+.|....+.=||+-.||.|.||..+++.++.
T Consensus 77 l~~~~~~~~~~i~v~Ga~GgR~DH~lanl~~l~~~~ 112 (123)
T PF04263_consen 77 LEYAIEQGPDEIIVLGALGGRFDHTLANLNLLYKYK 112 (123)
T ss_dssp HHHHHHTTTSEEEEES-SSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEecCCCcHHHHHHHHHHHHHHH
Confidence 444478899988888999999999999999998765
No 63
>PF13286 HD_assoc: Phosphohydrolase-associated domain; PDB: 2DQB_D.
Probab=52.23 E-value=24 Score=28.96 Aligned_cols=34 Identities=12% Similarity=-0.002 Sum_probs=27.3
Q ss_pred HHHHhhhhHHhcCchhHHHHHHHHHHHHHhhhhh
Q 039727 269 SARADLHRTVYTHAKVKAIELMLVDALLEANEHL 302 (480)
Q Consensus 269 ~~R~~my~~VY~H~~~~~~e~ml~~al~~a~~~l 302 (480)
..|..+|.+||.|+.+...+.....++...-+.+
T Consensus 13 ~Lk~f~~~~Iy~~~~v~~~~~~~~~ii~~Lfd~~ 46 (92)
T PF13286_consen 13 ELKKFNYENIYQSPRVVEEEEKGRRIIRELFDYF 46 (92)
T ss_dssp HHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999998888777776654443
No 64
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=49.48 E-value=33 Score=37.64 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCC
Q 039727 92 FEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGH 138 (480)
Q Consensus 92 FeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGH 138 (480)
-+|+--|...|..+++.+....+ ...+..+.. +..||+|||+|.
T Consensus 328 ~~~~~~v~~~a~~l~~~~~~~~~--~~~~~~~~~-l~~Aa~Lh~iG~ 371 (492)
T COG0248 328 LAQAKRVAKLALELFDQLLALLK--IDEEAEERL-LEAAAMLHEIGL 371 (492)
T ss_pred HHhHhhHHHHHHHHHHHhhhccc--cCCChHHHH-HHHHHHHHHhcc
Confidence 36677788888888887754322 234555555 899999999996
No 65
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=44.14 E-value=28 Score=32.67 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcC
Q 039727 93 EHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 93 eHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiG 137 (480)
-|||.|....+-+++.+. +|.+.-.++|||||+-
T Consensus 50 kHcla~eavMr~lARe~g-----------EDEEkw~~~GlLHD~D 83 (212)
T COG2316 50 KHCLAVEAVMRWLAREWG-----------EDEEKWAVTGLLHDFD 83 (212)
T ss_pred HHHHHHHHHHHHHHHHhC-----------ccHHHHHHHhhhhhcc
Confidence 599999888877776542 2334678999999975
No 66
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=40.13 E-value=73 Score=31.10 Aligned_cols=45 Identities=24% Similarity=0.253 Sum_probs=30.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcC
Q 039727 87 AVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 87 A~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiG 137 (480)
=.||=-+||.-|+-+|..+.. +....+. .-|-+.+...||+||+.
T Consensus 26 ~~~nVA~HSf~Va~iA~~Lg~-iee~~G~-----~vd~~~lyekAL~HD~~ 70 (215)
T PF12917_consen 26 QEHNVAEHSFKVAMIAQFLGD-IEEQFGN-----EVDWKELYEKALNHDYP 70 (215)
T ss_dssp S--BHHHHHHHHHHHHHHHHH-HHHHTT---------HHHHHHHHHHTTGG
T ss_pred chhhHHHHHHHHHHHHHHHHH-HHHHhCC-----ccCHHHHHHHHhccccH
Confidence 578999999999999987765 4443332 22345677799999987
No 67
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=36.78 E-value=40 Score=33.57 Aligned_cols=14 Identities=43% Similarity=0.909 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhcCC
Q 039727 125 QTVKLAGLLHDVGH 138 (480)
Q Consensus 125 ~~v~iAaLlHDiGH 138 (480)
.=++++||+||+|-
T Consensus 82 dW~~LtGLiHDLGK 95 (253)
T PF05153_consen 82 DWMQLTGLIHDLGK 95 (253)
T ss_dssp HHHHHHHHHTTGGG
T ss_pred chhhheehhccchh
Confidence 35799999999995
No 68
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=34.73 E-value=35 Score=32.72 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=27.9
Q ss_pred hcccccCccccccCCCCCCchhHHHHHHHHHHHHH
Q 039727 72 RDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAV 106 (480)
Q Consensus 72 R~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~ 106 (480)
+.+.+.|....+.=||+-.|+.|.|+..++..+..
T Consensus 80 ~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L~~~~ 114 (203)
T TIGR01378 80 KYALERGADEITILGATGGRLDHTLANLNLLLEYA 114 (203)
T ss_pred HHHHHCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 44456677767777999999999999999887754
No 69
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=33.89 E-value=27 Score=35.60 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCccccccc
Q 039727 93 EHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFERE 148 (480)
Q Consensus 93 eHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~ 148 (480)
+++.-++..|..+++.+ + ..+....-+|||||++|=.+|.+.|...
T Consensus 119 ~~a~~~A~ia~~La~~~--------g--~~~~~~~y~~gLLh~lG~l~ll~~~~~~ 164 (289)
T COG1639 119 DTAIETAMIAEGLARAL--------G--RADSDEAYTAGLLHNLGILVLLTDFPDH 164 (289)
T ss_pred HHHHHHHHHHHHHHHHh--------C--cccHHHHHHHHHHHHccHHHHHHHhHHH
Confidence 56666666666665543 1 2234457899999999999999998874
No 70
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=32.51 E-value=37 Score=32.50 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=31.7
Q ss_pred hhcccccCccccccCCCCCCchhHHHHHHHHHHHHHH
Q 039727 71 LRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQ 107 (480)
Q Consensus 71 LR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~ 107 (480)
|+.+.+.|....+.=||+-.||.|+||..++..++.+
T Consensus 83 l~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l~~~~~ 119 (208)
T cd07995 83 LKLALERGADEIVILGATGGRLDHTLANLNLLLKYAK 119 (208)
T ss_pred HHHHHHcCCCEEEEEccCCCcHHHHHHHHHHHHHHHh
Confidence 5777778888888889999999999999999888753
No 71
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=31.82 E-value=15 Score=41.55 Aligned_cols=12 Identities=50% Similarity=0.974 Sum_probs=10.3
Q ss_pred HHHHHHhhhcCC
Q 039727 127 VKLAGLLHDVGH 138 (480)
Q Consensus 127 v~iAaLlHDiGH 138 (480)
+.+||||||||-
T Consensus 1 l~~~aLLHDIGK 12 (648)
T TIGR02578 1 LAVAALLHDIGK 12 (648)
T ss_pred Cchhhhhhccch
Confidence 358999999996
No 72
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=29.77 E-value=42 Score=31.36 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=11.4
Q ss_pred HHHHHHHhhhcCC
Q 039727 126 TVKLAGLLHDVGH 138 (480)
Q Consensus 126 ~v~iAaLlHDiGH 138 (480)
-+-++||.||+|-
T Consensus 117 WlHLtaLiHDLGK 129 (204)
T KOG1573|consen 117 WLHLTALIHDLGK 129 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 4788999999996
No 73
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=22.83 E-value=68 Score=36.68 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=17.0
Q ss_pred eEEeecccHHHHHHHHHHHHhhhhH
Q 039727 253 EICYRAKDYLTVYKLFSARADLHRT 277 (480)
Q Consensus 253 ~i~~~~k~~~~i~~~~~~R~~my~~ 277 (480)
|+-++....+..-++-.+-++.|+.
T Consensus 294 EvQIRT~~mh~~Ae~Gvaahw~yk~ 318 (683)
T TIGR00691 294 EIQIRTEDMDRVAEYGIAAHWIYKE 318 (683)
T ss_pred EEEEEehHHHHHHHHHHHHHHhhcC
Confidence 4556666777777777777777764
No 74
>COG1353 Predicted CRISPR-associated polymerase [Defense mechanisms]
Probab=21.82 E-value=51 Score=38.44 Aligned_cols=15 Identities=47% Similarity=0.986 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhhcC
Q 039727 123 DIQTVKLAGLLHDVG 137 (480)
Q Consensus 123 d~~~v~iAaLlHDiG 137 (480)
+...+.|||||||+|
T Consensus 4 ~~~~~~i~aLLHD~g 18 (799)
T COG1353 4 EFEELKIAALLHDIG 18 (799)
T ss_pred HHHHHHHHHHhcCCc
Confidence 345689999999999
No 75
>PRK09694 helicase Cas3; Provisional
Probab=21.01 E-value=1.1e+02 Score=36.27 Aligned_cols=88 Identities=16% Similarity=0.086 Sum_probs=53.3
Q ss_pred CCCchhHHHHHHHHHHHHHHH---HHHccCCCCCCChHH-HHHHHHHHHhhhcCCCCCcccccccch---hhcc------
Q 039727 88 VHSRFEHSLGVYWLAGTAVQT---LKDYQGLELDIDDID-IQTVKLAGLLHDVGHGPFSHMFEREFL---PRVL------ 154 (480)
Q Consensus 88 ~HtRFeHSLGv~hLA~~~~~~---l~~~~~~~l~i~~~d-~~~v~iAaLlHDiGHgPFSH~~E~~~~---~~~~------ 154 (480)
-|-=.-|+|-|+-+|..+.+. +++.-...++.+.+. ...+..=+-|||||- ||..|..... +.+.
T Consensus 24 ~hpL~~H~lDvAava~~l~~~~~~~~~~l~~~lg~~~~~~~~~~~fl~~lHDiGK--~tp~FQ~~~~~~~~~l~~~g~~~ 101 (878)
T PRK09694 24 YHLLPYHCLDVAAVADCWWDQSPVLRSQFSANEMLSKQQVRAWLLFFVALHDIGK--FDIRFQYKAPEIWLKLNPAGPSI 101 (878)
T ss_pred cChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHcccccc--CCHHHHhhhHHHHHHHHhccCCC
Confidence 355578999999999988763 111111134555444 344444566899997 5666664220 0000
Q ss_pred ------CCCCCcHHHHHHHHHHHHHHhcC
Q 039727 155 ------SGSNWTHEDMSLKMIDYIVDQHY 177 (480)
Q Consensus 155 ------~~~~~~HE~~s~~ii~~il~~~~ 177 (480)
....+.|...|..++...+..++
T Consensus 102 ~~~~~~~~~~~~H~~~g~~~l~~~l~~~~ 130 (878)
T PRK09694 102 SGPSTQMCRKYDHGAAGLLWFRQDFRSNQ 130 (878)
T ss_pred CCccccccccCCchHHHHHHHHHHHHhcc
Confidence 11247899999999987776544
Done!