Query 039727
Match_columns 480
No_of_seqs 236 out of 1501
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 22:00:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1n_A SAM domain and HD domai 100.0 9E-103 3E-107 826.6 32.5 433 42-477 17-499 (528)
2 3irh_A HD domain protein; phos 100.0 4.9E-74 1.7E-78 602.3 21.1 292 39-353 34-357 (480)
3 2hek_A Hypothetical protein; p 100.0 4.9E-68 1.7E-72 548.4 24.7 354 42-452 2-365 (371)
4 2q14_A Phosphohydrolase; BT420 100.0 6.5E-67 2.2E-71 544.6 24.4 287 41-352 5-320 (410)
5 2dqb_A Deoxyguanosinetriphosph 100.0 3.5E-32 1.2E-36 280.3 2.9 213 55-301 42-266 (376)
6 2pgs_A Putative deoxyguanosine 99.9 6.7E-28 2.3E-32 253.7 11.4 130 55-186 29-181 (451)
7 3bg2_A DGTP triphosphohydrolas 99.9 1.2E-26 4.2E-31 243.4 6.6 130 55-186 31-187 (444)
8 2pq7_A Predicted HD superfamil 98.5 1.3E-07 4.6E-12 90.0 5.6 106 88-226 31-138 (220)
9 3b57_A LIN1889 protein; Q92AN1 98.4 2.1E-07 7.2E-12 88.2 5.9 111 90-236 25-144 (209)
10 3dto_A BH2835 protein; all alp 98.2 1.3E-06 4.5E-11 83.8 7.0 100 90-225 25-127 (223)
11 3gw7_A Uncharacterized protein 98.2 8.2E-07 2.8E-11 86.1 5.4 114 90-235 25-147 (239)
12 3djb_A Hydrolase, HD family; a 98.2 8.4E-07 2.9E-11 85.2 3.9 100 90-225 25-127 (223)
13 2pjq_A Uncharacterized protein 98.0 6.7E-06 2.3E-10 79.1 6.7 100 90-225 30-133 (231)
14 2o08_A BH1327 protein; putativ 97.9 1.4E-05 4.9E-10 74.1 6.1 104 90-223 18-131 (188)
15 3ccg_A HD superfamily hydrolas 97.8 2.9E-05 1E-09 72.2 7.5 98 90-211 19-127 (190)
16 2qgs_A Protein Se1688; alpha-h 97.8 2.6E-05 8.8E-10 74.7 6.3 100 90-226 25-129 (225)
17 2ogi_A Hypothetical protein SA 97.4 0.0001 3.5E-09 68.9 4.4 98 90-211 26-133 (196)
18 3tm8_A BD1817, uncharacterized 96.7 0.001 3.5E-08 67.1 4.3 44 88-139 164-208 (328)
19 3hc1_A Uncharacterized HDOD do 96.7 0.00013 4.4E-09 72.7 -2.6 113 90-226 118-244 (305)
20 1zkl_A HCP1, TM22, high-affini 96.4 0.0064 2.2E-07 62.0 8.1 88 85-178 79-169 (353)
21 3i7a_A Putative metal-dependen 96.0 0.0026 8.9E-08 62.4 2.4 133 3-142 23-165 (281)
22 1f0j_A PDE4B, phosphodiesteras 95.6 0.0084 2.9E-07 61.6 4.6 88 86-179 80-170 (377)
23 1taz_A Calcium/calmodulin-depe 95.6 0.012 4E-07 60.3 5.4 86 85-176 78-166 (365)
24 2our_A CAMP and CAMP-inhibited 95.5 0.009 3.1E-07 60.3 4.3 86 85-179 76-164 (331)
25 3v93_A Cyclic nucleotide speci 95.5 0.012 4.1E-07 59.8 5.1 59 84-146 94-152 (345)
26 3itu_A CGMP-dependent 3',5'-cy 95.5 0.012 4.2E-07 59.7 5.2 57 85-146 78-134 (345)
27 1y2k_A DPDE3, PDE43, CAMP-spec 95.4 0.012 4E-07 59.9 4.6 88 86-179 93-183 (349)
28 1vqr_A Hypothetical protein CJ 95.3 0.0054 1.8E-07 60.5 1.7 102 29-143 56-167 (297)
29 1tbf_A CGMP-specific 3',5'-cyc 95.2 0.034 1.2E-06 56.5 7.6 88 86-179 98-188 (347)
30 2r8q_A Class I phosphodiestera 95.2 0.011 3.6E-07 60.5 3.9 90 85-179 96-190 (359)
31 3dyn_A High affinity CGMP-spec 95.0 0.013 4.4E-07 59.2 3.6 57 85-146 71-127 (329)
32 3ecm_A High affinity CAMP-spec 95.0 0.017 5.8E-07 58.5 4.5 56 86-146 72-127 (338)
33 3qi3_A High affinity CGMP-spec 94.8 0.023 8E-07 60.5 5.1 75 67-146 218-304 (533)
34 3hr1_A CAMP and CAMP-inhibited 94.6 0.028 9.6E-07 57.7 5.0 54 86-146 108-161 (380)
35 3ibj_A CGMP-dependent 3',5'-cy 94.5 0.04 1.4E-06 60.6 6.3 57 85-146 439-495 (691)
36 3ljx_A MMOQ response regulator 94.5 0.0041 1.4E-07 61.3 -1.6 121 37-170 49-190 (288)
37 3g4g_A DPDE3, PDE43, CAMP-spec 94.4 0.03 1E-06 58.2 4.6 55 87-146 160-214 (421)
38 3bjc_A CGMP-specific 3',5'-cyc 93.9 0.037 1.3E-06 62.7 4.7 87 86-179 613-702 (878)
39 2paq_A 5'-deoxynucleotidase YF 93.9 0.12 4.1E-06 48.4 7.3 63 67-137 11-73 (201)
40 3rf0_A Exopolyphosphatase; str 93.3 0.031 1.1E-06 52.6 2.3 58 70-138 6-65 (209)
41 2cqz_A 177AA long hypothetical 93.2 0.082 2.8E-06 48.4 4.8 63 67-137 10-73 (177)
42 2ibn_A Inositol oxygenase; red 92.7 0.032 1.1E-06 53.5 1.2 44 85-143 54-99 (250)
43 3m1t_A Putative phosphohydrola 92.2 0.016 5.5E-07 56.6 -1.5 69 91-170 106-187 (275)
44 1so2_A CGMP-inhibited 3',5'-cy 92.1 0.089 3E-06 54.7 3.9 28 119-146 153-180 (420)
45 3kq5_A Hypothetical cytosolic 92.1 0.16 5.6E-06 51.9 5.7 50 83-139 64-118 (393)
46 3mem_A Putative signal transdu 92.0 0.033 1.1E-06 58.5 0.5 92 89-195 277-383 (457)
47 3m5f_A Metal dependent phospho 91.9 0.35 1.2E-05 46.5 7.5 92 80-175 8-105 (244)
48 3sk9_A Putative uncharacterize 91.6 0.43 1.5E-05 46.5 7.9 90 87-178 22-127 (265)
49 1ynb_A Hypothetical protein AF 89.8 0.79 2.7E-05 41.8 7.4 60 67-137 16-77 (173)
50 1u6z_A Exopolyphosphatase; alp 85.5 1.6 5.5E-05 46.3 7.7 58 72-138 317-374 (513)
51 3mzo_A LIN2634 protein; HD-dom 82.6 2.1 7.3E-05 40.3 6.4 62 67-137 10-71 (216)
52 1xx7_A Oxetanocin-like protein 82.5 1.2 4E-05 41.0 4.5 61 68-137 16-78 (184)
53 3hi0_A Putative exopolyphospha 80.6 1.2 4.2E-05 47.2 4.4 41 93-139 334-374 (508)
54 3aql_A Poly(A) polymerase; tra 75.0 0.68 2.3E-05 48.0 0.4 99 58-179 222-336 (415)
55 2gz4_A Hypothetical protein AT 68.3 5.7 0.00019 37.2 5.0 69 43-137 19-88 (207)
56 3nr1_A HD domain-containing pr 68.1 4 0.00014 37.2 3.9 31 92-136 32-62 (178)
57 4dmb_A HD domain-containing pr 67.0 5.4 0.00018 37.2 4.6 56 67-137 23-80 (204)
58 3nqw_A CG11900; stringent resp 64.7 4.2 0.00014 37.0 3.3 31 92-136 34-64 (179)
59 3kh1_A Predicted metal-depende 61.9 3.8 0.00013 38.1 2.5 59 67-137 19-78 (200)
60 1vfg_A A-adding enzyme, poly A 50.2 19 0.00064 36.6 5.6 73 58-137 195-269 (390)
61 1ou5_A TRNA CCA-adding enzyme, 45.4 13 0.00045 38.6 3.6 62 58-138 255-319 (448)
62 1vj7_A Bifunctional RELA/SPOT; 33.6 30 0.001 35.4 3.9 29 92-136 51-79 (393)
63 2omk_A Hypothetical protein; s 29.3 33 0.0011 32.3 3.2 41 67-107 107-148 (231)
64 3lm8_A Thiamine pyrophosphokin 26.7 34 0.0012 32.0 2.8 35 72-106 87-121 (222)
65 3l8m_A Probable thiamine pyrop 24.2 33 0.0011 31.8 2.2 34 72-105 83-116 (212)
66 3k94_A Thiamin pyrophosphokina 24.1 40 0.0014 31.6 2.7 34 71-104 85-118 (223)
67 2igp_A Retinoblastoma-associat 21.2 77 0.0026 26.7 3.7 48 57-107 70-117 (120)
No 1
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=100.00 E-value=9.3e-103 Score=826.59 Aligned_cols=433 Identities=37% Similarity=0.624 Sum_probs=341.3
Q ss_pred ccccccCCCCCcccChHHHHHhcCHHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCCh
Q 039727 42 SKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDD 121 (480)
Q Consensus 42 ~k~i~DpvhG~I~l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~ 121 (480)
.++++|||||+|+|++.+.+||+||+|||||+|+|||++++|||||+||||+|||||||||+.+++.|..+++ ++++++
T Consensus 17 ~~~~~Dpvhg~I~l~~~~~riI~s~~FqRLr~i~Qlg~~~~v~pga~hTRf~HSLgV~~la~~i~~~l~~~~~-~~~~~~ 95 (528)
T 3u1n_A 17 FQGPGDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVHALGEKQP-ELQISE 95 (528)
T ss_dssp ---CCBTTTBSCCCCHHHHHHHSSHHHHGGGGSBTTGGGTTTCTTCCCBHHHHHHHHHHHHHHHHHHHHHHCG-GGCCCH
T ss_pred cccccCCCCcCEEeCHHHHHHhCCHHHhhccCccccCCcccccCCCCcCHHHHHHHHHHHHHHHHHHHHhhCc-ccCCCH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999988765 678899
Q ss_pred HHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCC-------C-Chhhhhh--hhhh
Q 039727 122 IDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYID-------I-DSGRLDR--EMIV 191 (480)
Q Consensus 122 ~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~-------~-~~~~~~~--~~I~ 191 (480)
.|..++++||||||||||||||++|.+|.+....+.+|+||++|.+|++.+++++++. + +++++.. ++|.
T Consensus 96 ~d~~~v~~AaLlHDiGH~PFsH~~E~~~~~~~~~~~~~~HE~~S~~i~~~li~~~~i~~iL~~~g~~~~~~i~~I~~lI~ 175 (528)
T 3u1n_A 96 RDVLCVQIAGLCHDLGHGPFSHMFDGRFIPLARPEVKWTHEQGSVMMFEHLINSNGIKPVMEQYGLIPEEDICFIKEQIV 175 (528)
T ss_dssp HHHHHHHHHHHHTTTTCBTTBHHHHHTHHHHHCTTSCCCHHHHHHHHHHHHHHHTTCHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCccchhhhhhhhhhcCCCCCCHHHHHHHHHHHHhccccHHHHHHHcCCCcHHHHHHHHHHhc
Confidence 9999999999999999999999999998765545678999999999998776554431 2 2344432 5666
Q ss_pred ccCC--------Ccc-cccchhhHHhhhhcCCCCccccccccccccccccCCCCcchHHHhhcceEEEC----CeEEeec
Q 039727 192 TSHA--------SQK-SAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGCNFQFERLMETMRVMG----DEICYRA 258 (480)
Q Consensus 192 ~~~~--------~~~-~~~~~~~l~~Iv~n~~~~lDvDrlDYl~RDs~~~Gv~~~~D~~rLi~~~~v~~----~~i~~~~ 258 (480)
|... +.. .+.++.||++||+|++|+|||||||||+||||+||+.++||++|||++++|++ .+|||..
T Consensus 176 G~~~~~~~~~~~~~~gr~~ek~fL~~IVsn~~s~lDvDRmDYLlRDs~~tGv~~~~D~~RLi~~~rv~~~~~~~~I~~~~ 255 (528)
T 3u1n_A 176 GPLESPVEDSLWPYKGRPENKSFLYEIVSNKRNGIDVDKWDYFARDCHHLGIQNNFDYKRFIKFARVCEVDNELRICARD 255 (528)
T ss_dssp CCCC------CCCCSSSCGGGGGGGGSSCCTTTSCCHHHHHHHHHHHHHHTCCCCCCHHHHHHTEEEEESSSSEEEEEEG
T ss_pred CccccccccccccccCCcchhhHHHHHHhCCCCCCCccchhhHHHHHHHhCCCCCcCHHHHHhhcEEEecCCCcEEEEec
Confidence 6432 111 23357899999999999999999999999999999998999999999999985 3699999
Q ss_pred ccHHHHHHHHHHHHhhhhHHhcCchhHHHHHHHHHHHHHhhhhhC----------CCcCCCChHHHhhCCHHHHHHHHhC
Q 039727 259 KDYLTVYKLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLG----------ISSSIQQPAEFWKLDDTIINAILAD 328 (480)
Q Consensus 259 k~~~~i~~~~~~R~~my~~VY~H~~~~~~e~ml~~al~~a~~~l~----------is~~~~dp~~yl~LDD~il~~i~~s 328 (480)
|++.++++||.+|+.||++||+||+++|+|.||.+||.+|++++. +++.+.||++|++|||+++..|+.+
T Consensus 256 k~~~~ie~~~~aR~~My~~VY~Hk~~ra~e~Ml~~al~~A~~~l~i~g~~g~~~~is~~~~d~~~f~kLdD~~l~~il~s 335 (528)
T 3u1n_A 256 KEVGNLYDMFHTRNSLHRRAYQHKVGNIIDTMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYTKLTDNIFLEILYS 335 (528)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTTCCEECGGGCEECGGGGGGCHHHHTTCSTHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhccccccccccccccccCHHHHHhCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999764 6778899999999999999999999
Q ss_pred CCcccHHHHHHHHHhhcCCcceeccccccChhh-h--hhcccCChhhhhhhhc--cCCCCCCCCceEEEeEEeccCCCCC
Q 039727 329 PRPELKKARDIILRVRRRQLYQFCNEYSVPKAK-Q--EHFKGITAQDIVCSQK--AGEVTLKEEDVIVSIVKIDLTRGKK 403 (480)
Q Consensus 329 ~~~~l~~a~~ll~ri~~R~Lyk~v~e~~v~~~~-~--~~~~~~~~~eii~~~~--~~~~~l~~~diiv~~~~id~~~~~~ 403 (480)
.+|++++|++|++||++|+|||+|++..++... + +.++.+ +++|.++.. ...+.+.++||||++++||||||++
T Consensus 336 ~~~~L~~Ar~i~~ri~~R~LYK~v~~~~~~~~~~~~~~~~~~~-~~eIa~~~~~~~~~~~L~~~DiiV~~~~idyG~~~~ 414 (528)
T 3u1n_A 336 TDPKLKDAREILKQIEYRNLFKYVGETQPTGQIKIKREDYESL-PKEVASAKPKVLLDVKLKAEDFIVDVINMDYGMQEK 414 (528)
T ss_dssp CCSTTHHHHHHHHHHHHTCCCEEEEEECCTTSCCCCGGGGGGH-HHHHHTCCCSSCCSSCCCGGGEEEEEEECC------
T ss_pred CCcchHHHHHHHHHHHcCCCCeeeeeeccCcccccCHHHHHHH-HHHHHHhccCcccccccCcccEEEEEEeecCCCCCC
Confidence 999999999999999999999999998775431 1 112211 345554432 1245789999999999999999999
Q ss_pred CCCCccccCC----CceeecCccccccccCcCCCCceEEEEEecCC--CcHHHHHHHHHHHHHHHcCCCCC------CCC
Q 039727 404 NPLERYDYCS----DVKFLIDKEERISHLLPTFCQDMIVRVYAKEP--HLVEAVSDAFENFQMKTYGEKTQ------VHS 471 (480)
Q Consensus 404 ~Pl~~V~f~~----~~~~~l~~~~evs~l~P~~f~e~~irVy~~~~--~~~~~v~~A~~~~~~~~~~~~~~------~~~ 471 (480)
||+++|+|++ ++++.++ ++++|.++|.+|+|..+|||||++ +++++|++||++||+++...++| +..
T Consensus 415 nPl~~V~Fy~k~~~~~~~~i~-~~~vS~llP~~F~E~~iRVy~k~~d~~~~~~a~~aF~~wc~~~~~~~~~~~~~~~~~~ 493 (528)
T 3u1n_A 415 NPIDHVSFYCKTAPNRAIRIT-KNQVSQLLPEKFAEQLIRVYCKKVDRKSLYAARQYFVQWCADRNFTKPQDGDVIAPLI 493 (528)
T ss_dssp ----CCCEECSSSTTBCC----------------CCEEEEEEESCCSHHHHHHHHHHHHHHHHTTTCCCCCC--------
T ss_pred ChhhceecccCCCCCcCcccC-hhhhcccCcccccceEEEEEEcCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCeecccc
Confidence 9999999864 4678888 899999999999999999999875 58899999999999998877755 557
Q ss_pred Cccccc
Q 039727 472 TPEKKK 477 (480)
Q Consensus 472 tp~~~~ 477 (480)
||.|+.
T Consensus 494 ~~~~~~ 499 (528)
T 3u1n_A 494 TPQKKE 499 (528)
T ss_dssp ------
T ss_pred Cccchh
Confidence 888763
No 2
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=100.00 E-value=4.9e-74 Score=602.32 Aligned_cols=292 Identities=28% Similarity=0.453 Sum_probs=249.5
Q ss_pred cccccccccCCCCCcccC-hHHHHHhcCHHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCC--
Q 039727 39 ERYSKHVHDNVHGNIYLD-PLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGL-- 115 (480)
Q Consensus 39 ~~~~k~i~DpvhG~I~l~-~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~-- 115 (480)
....|+|+|||||+|+|+ +.+.+||+||+|||||+|+|||++++|||||+||||+|||||||+|+.+++.|..+++.
T Consensus 34 ~~~~KvirDPVhG~I~l~~~~~~~iI~s~~FqRLr~i~QlG~~~~v~pga~HTRf~HSLgV~~la~~i~~~l~~~~~~~~ 113 (480)
T 3irh_A 34 LPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLGVYEITRRICEIFQRNYSVER 113 (480)
T ss_dssp EEEEEEEEETTTEEEEEEEHHHHHHHTSHHHHGGGGSBSSTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHHHHSBHHH
T ss_pred ccCCceeecCCceeEEECHHHHHHHhcCHHHHhhhhhhcccccceecCCCCcCHHHHHHHHHHHHHHHHHHHHhhCcccc
Confidence 345799999999999998 89999999999999999999999999999999999999999999999999999876542
Q ss_pred --CCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHH-------HHHhcCCCCChhhhh
Q 039727 116 --ELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDY-------IVDQHYIDIDSGRLD 186 (480)
Q Consensus 116 --~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~-------il~~~~~~~~~~~~~ 186 (480)
...+++.+..++++||||||||||||||++|.++ +|+||++|.+|+.. ++++.+.+. ++.+.
T Consensus 114 ~~~~~~~~~~~~~v~~AaLlHDIGH~PFsH~~E~~~--------~~~HE~~s~~ii~~~~~ei~~iL~~~~~~~-p~~v~ 184 (480)
T 3irh_A 114 LGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIF--------DTNHEAITVQIITSPETEVYQILNRVSADF-PEKVA 184 (480)
T ss_dssp HGGGSBCGGGHHHHHHHHHHTTTTCCTTHHHHHHHH--------CCCHHHHHHHHHHCTTSHHHHHHHHHCTTH-HHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhccCCCCccchhhhcc--------CCCHHHHHHHHHHccchhHHHHHHHcCCCc-HHHHH
Confidence 1247778888999999999999999999999974 48999999999853 566655542 33343
Q ss_pred hhhhhccCCCcccccchhhHHhhhhcCCCCccccccccccccccccCCCC-cchHHHhhcceEEECCeEEeecccHHHHH
Q 039727 187 REMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGC-NFQFERLMETMRVMGDEICYRAKDYLTVY 265 (480)
Q Consensus 187 ~~~I~~~~~~~~~~~~~~~l~~Iv~n~~~~lDvDrlDYl~RDs~~~Gv~~-~~D~~rLi~~~~v~~~~i~~~~k~~~~i~ 265 (480)
++|.+. .+..++.+||+ |+|||||||||+||||+||+++ .+|++||++++++.+++||+..|++.++|
T Consensus 185 -~ii~~~-------~~~~~l~~lis---~~LDvDRmDYLlRDsy~tGv~yG~~D~~RLi~~l~v~~~~l~~~~kgi~avE 253 (480)
T 3irh_A 185 -SVITKQ-------YPNPQVVQMIS---SQIDADRMDYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNGMHAVE 253 (480)
T ss_dssp -HHHTTC-------SSCHHHHHHHS---STTCHHHHHHHHHHHHHHTCSTTCCCHHHHHHHEEEETTEEEEEGGGHHHHH
T ss_pred -HHHcCC-------CCchhHHHhcc---CCCCcHHHHHHHHHHHHhCCCCCCcCHHHHHhhcEEeCCEEEEehhhHHHHH
Confidence 455432 12457889998 7999999999999999999996 69999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHhcCchhHHHHHHHHHHHHHhhhhhCC---------------CcCCCChHHHhhCCHHHHH----HHH
Q 039727 266 KLFSARADLHRTVYTHAKVKAIELMLVDALLEANEHLGI---------------SSSIQQPAEFWKLDDTIIN----AIL 326 (480)
Q Consensus 266 ~~~~~R~~my~~VY~H~~~~~~e~ml~~al~~a~~~l~i---------------s~~~~dp~~yl~LDD~il~----~i~ 326 (480)
+|+.+|+.||++||+||+++++|.||.++|++|.+.+.- .....++++|++|||..+. .+.
T Consensus 254 ~~l~aR~~My~~VY~H~~~r~~e~mL~~~l~ra~~l~~~~~~~~~~~~~~l~~f~~~~~~l~~yl~lDD~~l~~~l~~w~ 333 (480)
T 3irh_A 254 DYIVSRYQMYVQVYFHPVSRGMEVILDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGVLSTYFTQWM 333 (480)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHCTTCCSCCCCTTTHHHHTSCCCHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhcCCcccccCcHHHHHHhcCCCCHHHHHhCChHHHHHHHHHHH
Confidence 999999999999999999999999999999998764310 1124688999999999765 344
Q ss_pred hCCCcccHHHHHHHHHhhcCCcceecc
Q 039727 327 ADPRPELKKARDIILRVRRRQLYQFCN 353 (480)
Q Consensus 327 ~s~~~~l~~a~~ll~ri~~R~Lyk~v~ 353 (480)
.++++. .++|++|+.+|+|||++.
T Consensus 334 ~~~d~i---L~~L~~r~~~R~l~K~~~ 357 (480)
T 3irh_A 334 DVPDSI---LGDLAKRFLMRKPLKSAT 357 (480)
T ss_dssp TSSCHH---HHHHHHHHHHTCCCEEEE
T ss_pred hCCChH---HHHHHHHHHcCCCCeEEE
Confidence 566664 468999999999999884
No 3
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=100.00 E-value=4.9e-68 Score=548.39 Aligned_cols=354 Identities=27% Similarity=0.433 Sum_probs=282.8
Q ss_pred ccccccCCCCCcccChHHHHHhcCHHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCCh
Q 039727 42 SKHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDD 121 (480)
Q Consensus 42 ~k~i~DpvhG~I~l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~ 121 (480)
+|+|+|||||+|++++.+.+||+||+|||||+|+|+|++++|||||+||||+||+||+++|+.+++.+ +++.
T Consensus 2 ~k~i~Dpvhg~I~l~~~~~~ii~s~~fqRLr~i~QlG~~~~v~p~a~~~r~~Hsl~V~~~a~~ia~~~--------~~~~ 73 (371)
T 2hek_A 2 IKEFSDPLYGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESL--------KVKE 73 (371)
T ss_dssp EEEEEETTTEEEEEEHHHHHHHTSHHHHGGGGSBTTTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHH--------TCTT
T ss_pred ceEEeeCCCCCeecChHHHHHhCCHHHhCccccCccCccceeeCCCCCChhHHHHHHHHHHHHHHHHc--------CCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999875 3443
Q ss_pred HHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHH-----HHHHhcCCCCChhhhhh--hhhhccC
Q 039727 122 IDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMID-----YIVDQHYIDIDSGRLDR--EMIVTSH 194 (480)
Q Consensus 122 ~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~-----~il~~~~~~~~~~~~~~--~~I~~~~ 194 (480)
. ..+.+|||||||||+||||++|..+ ..+++||++|..+++ .+++++ ++++.++. .+|.+..
T Consensus 74 ~--~~~~~AaLLHDiG~~pfsh~~e~~~------~~g~~He~~g~~i~~~~~i~~iL~~~---~~~~~i~~I~~~I~~~~ 142 (371)
T 2hek_A 74 K--ELVKLAGLLHDLGHPPFSHTTEVLL------PRERSHEDFTERVIKETEIYEILKQD---YSHEDIERLVRITLGKP 142 (371)
T ss_dssp H--HHHHHHHHTTTTTCCSSSSCHHHHS------TTSSSCCCHHHHHHHHSHHHHHHHTT---SCHHHHHHHHHHHHTCC
T ss_pred H--HHHHHHHHHHhcCccccccchHHHh------ccCCCHHHHHHHHHhcchHHHHHHHh---CCHHHHHHHHHHHhcCC
Confidence 3 6899999999999999999999865 236999999999986 677765 55766443 6676543
Q ss_pred CCcccccchhhHHhhhhcCCCCccccccccccccccccCCCC-cchHHHhhcceEEECCeEEeecccHHHHHHHHHHHHh
Q 039727 195 ASQKSAKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGC-NFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARAD 273 (480)
Q Consensus 195 ~~~~~~~~~~~l~~Iv~n~~~~lDvDrlDYl~RDs~~~Gv~~-~~D~~rLi~~~~v~~~~i~~~~k~~~~i~~~~~~R~~ 273 (480)
. ..+..++.+||+ |+|||||||||+||||+||+++ .+|++||++++++.+++||+.+|++.++|+|+.+|+.
T Consensus 143 ~----~~~~~~l~~IVs---~~lDaDRlDYl~RDs~~~g~~~g~~d~~rll~~~~~~~~~l~~~~kg~~~~e~~~~~R~~ 215 (371)
T 2hek_A 143 E----DEEEKLLSEIIT---GEFGSDRMDYLRRDAYFCGVSYGFFDYDRLISTLRVYENKVVVDESGLRALENFLISRYF 215 (371)
T ss_dssp S----SHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCCSSCCCCHHHHHTEEEETTEEEEEGGGHHHHHHHHHHHHH
T ss_pred C----CcccchHHHHhc---CCCCccccchhccchhhhcCCcCCcCHHHHHhheEEeCCEEEEehhhHHHHHHHHHHHHH
Confidence 1 235678999999 5799999999999999999986 6999999999999999999999999999999999999
Q ss_pred hhhHHhcCchhHHHHHHHHHHHHHhhhhhCCCcCCCChHHHhhCCHHHHHHH-HhCCCcccHHHHHHHHHhhcCCcceec
Q 039727 274 LHRTVYTHAKVKAIELMLVDALLEANEHLGISSSIQQPAEFWKLDDTIINAI-LADPRPELKKARDIILRVRRRQLYQFC 352 (480)
Q Consensus 274 my~~VY~H~~~~~~e~ml~~al~~a~~~l~is~~~~dp~~yl~LDD~il~~i-~~s~~~~l~~a~~ll~ri~~R~Lyk~v 352 (480)
||++||+||+++++|.||.++|.+|.+.- .+.++++|+.|||..+... ..+.. +++|++||.+|+|||++
T Consensus 216 my~~VY~H~~~~~~~~ml~~~l~~~~~~~----~i~~~~~~~~ldD~~~~~~~l~~~~-----~~~l~~~i~~R~l~k~~ 286 (371)
T 2hek_A 216 MYVQVYFHKVVRILSIHLVEFLKKLISQE----DFTDINNFLRLNDAFVISELFKRKA-----FREDFERIFQRKHFKTL 286 (371)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSSC----CCSSTHHHHTCCHHHHHHHHHHCST-----THHHHHHHHSSCCCEEE
T ss_pred hhhhhhcChHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHhCCHHHHHHHHhhccc-----HHHHHHHHhcCCCCeEE
Confidence 99999999999999999999999986432 2235999999999866555 54432 68999999999999999
Q ss_pred cccccChhhhhhcccCChhhhhhhhccCCCCCCCCceEE-EeEEeccCCCCCCCCCccccCCCceeecCccccccccCcC
Q 039727 353 NEYSVPKAKQEHFKGITAQDIVCSQKAGEVTLKEEDVIV-SIVKIDLTRGKKNPLERYDYCSDVKFLIDKEERISHLLPT 431 (480)
Q Consensus 353 ~e~~v~~~~~~~~~~~~~~eii~~~~~~~~~l~~~diiv-~~~~id~~~~~~~Pl~~V~f~~~~~~~l~~~~evs~l~P~ 431 (480)
.... ..+..+. .++.++. ..+ ++++++ +.+.. +. +.++ .|. .+++... ..++|+++..
T Consensus 287 ~~~~-~~~~~~~-----~~~~l~~----~~g--~~~~~~~d~~~~--~~--~~~i-~i~-~~~~~~~---l~~~S~lv~~ 345 (371)
T 2hek_A 287 LSTE-NYEKFSE-----TKERLLE----KFP--QEKVRFDEVEKE--VY--GGNI-YVL-SSEGLKK---AHELSPLIAS 345 (371)
T ss_dssp EEES-CHHHHHH-----HHHHHHH----HSC--GGGEEEEEEEEC--SC--CSCC-EEE-ETTEEEE---HHHHCHHHHH
T ss_pred EEeC-CHHHHHH-----HHHHHHH----HhC--CCeEEEEccCCC--Cc--CCCc-EEE-ECCEEEE---HHHhCHHHHh
Confidence 6543 1111111 1122222 123 678888 66542 22 2222 122 2344455 4678999988
Q ss_pred CCCceEEEEEecCCCcHHHHH
Q 039727 432 FCQDMIVRVYAKEPHLVEAVS 452 (480)
Q Consensus 432 ~f~e~~irVy~~~~~~~~~v~ 452 (480)
.......|+|++ ++..+.++
T Consensus 346 l~~~~~~~~~~~-~~~~~~~~ 365 (371)
T 2hek_A 346 LKPIKLYRIYVD-RQLWEKAR 365 (371)
T ss_dssp CCCEEEEEEEEC-TTTHHHHH
T ss_pred ccccceEEEEEc-HHHHHHHH
Confidence 888899999997 66665553
No 4
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00 E-value=6.5e-67 Score=544.62 Aligned_cols=287 Identities=31% Similarity=0.482 Sum_probs=244.9
Q ss_pred cccccccCCCCCcccCh-HHHHHhcCHHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCC
Q 039727 41 YSKHVHDNVHGNIYLDP-LALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDI 119 (480)
Q Consensus 41 ~~k~i~DpvhG~I~l~~-~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i 119 (480)
.+|+|+|||||+|++++ .+.+||+||+|||||+|+|||++++|||||+||||+||||||++|+++++.+..+++ .+
T Consensus 5 ~~k~i~Dpvhg~I~~~~~~~~~ii~s~~fqRL~~~~Qlg~~~~v~p~a~htRf~HSLgV~~la~~l~~~l~~~~~---~~ 81 (410)
T 2q14_A 5 ERKIINDPVFGFINIPKGLLYDIVRHPLLQRLTRIKQVGLSSVVYPGAQHTRFQHSLGAFYLMSEAITQLTSKGN---FI 81 (410)
T ss_dssp CEEEEEETTTEEEEEETTHHHHHHHSHHHHGGGGSBTTTTTTTTCTTCCCBHHHHHHHHHHHHHHHHHHHHHTTC---CC
T ss_pred cceEEecCCCCcEEECHHHHHHHHCCHHHHhHhhhhccCCceeecCCCCCCeeehHHHHHHHHHHHHHHHHhcCC---CC
Confidence 46999999999999997 999999999999999999999999999999999999999999999999999987653 47
Q ss_pred ChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHhcCCCCChhhhhhhhhhccCCCccc
Q 039727 120 DDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKS 199 (480)
Q Consensus 120 ~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~~~~~~~~~~~~~~~I~~~~~~~~~ 199 (480)
++.+..++++||||||||||||||++|.++. .+|+||++|.++++.+..+.+-.+.. .. ++|.+.
T Consensus 82 ~~~d~~~~~~AaLlHDiGh~PfsH~~E~~~~------~~~~He~~s~~ii~~l~~~i~~~L~~--~~-~ii~g~------ 146 (410)
T 2q14_A 82 FDSEAEAVQAAILLHDIGHGPFSHVLEDTIV------QGVSHEEISLMLMERMNKEMNGQLSL--AI-QIFKDE------ 146 (410)
T ss_dssp CHHHHHHHHHHHHHTTTTCCTTHHHHHTTTS------TTCCHHHHHHHHHHHHHHHTTTTTHH--HH-HHHTTC------
T ss_pred CHHHHHHHHHHHHHhccCCCccccccHHhhc------CCCCHHHHHHHHHHHhhhhHHHHHHH--HH-HHHcCC------
Confidence 7888899999999999999999999999753 36999999999999877654322211 11 455442
Q ss_pred ccchhhHHhhhhcCCCCccccccccccccccccCCCC-cchHHHhhcceEEECCeEEeecccHHHHHHHHHHHHhhhhHH
Q 039727 200 AKEKQFLYDIVANGRNGIDVDKFDYIVRDSRACGLGC-NFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTV 278 (480)
Q Consensus 200 ~~~~~~l~~Iv~n~~~~lDvDrlDYl~RDs~~~Gv~~-~~D~~rLi~~~~v~~~~i~~~~k~~~~i~~~~~~R~~my~~V 278 (480)
.++.++.+||+ |+|||||||||+|||++||+.+ .+|.+||++++++.+++||+..+++.++|+|+.+|+.||++|
T Consensus 147 -~~~~~l~~ivs---~~ldaDr~DYL~RDa~~~Gv~~G~~d~~Rii~~l~~~~~~i~~~~k~~~~~e~~~~~R~~my~~V 222 (410)
T 2q14_A 147 -YPKRFLHQLVS---GQLDMDRLDYLRRDSFYTGVTEGNIGSARIIKMLDVADDRLVIESKGIYSIENFLTARRLMYWQV 222 (410)
T ss_dssp -SSSTHHHHHHS---STTCHHHHHHHHHHHHHHCCGGGCCCHHHHHHTEEEETTEEEEEGGGHHHHHHHHHHHHHHHHHT
T ss_pred -CccchHHHhhc---CCcCcHHHHHhcchHHHhCCCCCCCCHHHHHhhceEeCCEEEEcHhhHHHHHHHHHHHHHHHHHH
Confidence 23578999998 6899999999999999999986 699999999999999999999999999999999999999999
Q ss_pred hcCchhHHHHHHHHHHHHHhhhhhCCC-------------cCCCCh----------HHHhhCCHHHHH-HHH---hCCCc
Q 039727 279 YTHAKVKAIELMLVDALLEANEHLGIS-------------SSIQQP----------AEFWKLDDTIIN-AIL---ADPRP 331 (480)
Q Consensus 279 Y~H~~~~~~e~ml~~al~~a~~~l~is-------------~~~~dp----------~~yl~LDD~il~-~i~---~s~~~ 331 (480)
|+|+++++++.|+.++|..|.+.+.-. ....++ ++|+.|||..+. .+. .++++
T Consensus 223 Y~h~~~~~~e~ml~~~l~~a~~~~~~g~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~ldD~~~~~~l~~~~~~~d~ 302 (410)
T 2q14_A 223 YLHKTSVAYERMLISTLLRAKELASQGVELFASPALHFFLYNDINHTEFHNNPDCLENFIQLDDNDIWTALKVWSNHPDK 302 (410)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHSSCCCHHHHHHCHHHHHHHTTCCHHHHHHHHHHHTTCSCH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHhhccCChhhhccchhhHHHHHhCCHHHHHHHHHHhhhCCCH
Confidence 999999999999999999987543210 123344 889999998554 333 34444
Q ss_pred ccHHHHHHHHHhhcCCcceec
Q 039727 332 ELKKARDIILRVRRRQLYQFC 352 (480)
Q Consensus 332 ~l~~a~~ll~ri~~R~Lyk~v 352 (480)
..++|++||.+|+|||..
T Consensus 303 ---~l~~L~~ri~~R~l~k~~ 320 (410)
T 2q14_A 303 ---VLSTLSLGMINRNIFKVE 320 (410)
T ss_dssp ---HHHHHHHHHHHTCCCEEE
T ss_pred ---HHHHHHHHHHcCCCCeEE
Confidence 457999999999999943
No 5
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=99.97 E-value=3.5e-32 Score=280.26 Aligned_cols=213 Identities=17% Similarity=0.240 Sum_probs=149.4
Q ss_pred cChHHHHHhcCHHHHhhhcccccCccccccCCCC-CCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHh
Q 039727 55 LDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAV-HSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLL 133 (480)
Q Consensus 55 l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~-HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLl 133 (480)
|.....+||+||.||||++++|+ +.++||+. ||||+|||||+++|+.+++.| ++++ .++.+||||
T Consensus 42 FqrD~~rII~S~~FrRL~~ktQv---~~~~~~d~~~tRl~HSl~Va~iar~ia~~l--------~l~~---~l~~~a~Ll 107 (376)
T 2dqb_A 42 YQKDRDRILHTTAFRRLEYKTQV---LPGWAGDYYRTRLTHTLEVAQVSRSIARAL--------GLNE---DLTEAIALS 107 (376)
T ss_dssp HHHHHHHHHHSHHHHHGGGSCSS---SCSCC--CCCCHHHHHHHHHHHHHHHHHHT--------TCCH---HHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHcCCCcc---ccCCCCcccccHHHHHHHHHHHHHHHHHHc--------CCCH---HHHHHHHHH
Confidence 44566799999999999999999 45778875 999999999999999999875 4442 589999999
Q ss_pred hhcCCCCCcccccccchhhccCCCCCcHHHHHHHHHHHHHHh----cCCCCChhhhhhhhhhccCCCccc------ccch
Q 039727 134 HDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMIDYIVDQ----HYIDIDSGRLDREMIVTSHASQKS------AKEK 203 (480)
Q Consensus 134 HDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii~~il~~----~~~~~~~~~~~~~~I~~~~~~~~~------~~~~ 203 (480)
|||||+||||++|.++........+|+|+.+|.+++..+..+ .|++++.+.+. .|+....+... ...+
T Consensus 108 HDiGh~PFgH~~E~~l~~~~~~~ggf~Hn~~s~ril~~le~~~~~~~glnLt~~~l~--~I~kh~~~~~~~~~~~~~~~~ 185 (376)
T 2dqb_A 108 HDLGHPPFGHTGEHVLNALMQDHGGFEHNAQALRILTHLEVRYPGFRGLNLTYEVLE--GIATHEAAYSPGFKPLYEGQG 185 (376)
T ss_dssp TTTTCCSSTTHHHHHHHHHTTTTTCCCHHHHHHHHHHTTCBCBTTBSBCCCCHHHHH--HHHHSCC-----------CCS
T ss_pred HhcCCCccccchHHHHHHHhhccCCCcHHHHHHHHHHHHhhccccccCCCCCHHHHH--HHHhCCCccchhhhhhcccCC
Confidence 999999999999997644332223799999999999875432 36777776663 45554432110 0123
Q ss_pred hhHHhhhhcCCCCccccccccccccccccCCCC-cchHHHhhcceEEECCeEEeecccHHHHHHHHHHHHhhhhHHhcCc
Q 039727 204 QFLYDIVANGRNGIDVDKFDYIVRDSRACGLGC-NFQFERLMETMRVMGDEICYRAKDYLTVYKLFSARADLHRTVYTHA 282 (480)
Q Consensus 204 ~~l~~Iv~n~~~~lDvDrlDYl~RDs~~~Gv~~-~~D~~rLi~~~~v~~~~i~~~~k~~~~i~~~~~~R~~my~~VY~H~ 282 (480)
.+...||+ +||+|||+.||+ .+|+.+ .+|.++|+.. .++++.++...+....+ ...++.+-
T Consensus 186 ~le~~Iv~------~AD~IaY~~~D~-~dgv~~G~i~~~~l~~~-~~~~~~~~~~~~~~~~~----------~~~~~~~~ 247 (376)
T 2dqb_A 186 TLEAQVVD------LSDAIAYAAHDL-DDGFRAGLLHPEELKEV-ELLQALALEEGLDLLRL----------PELDRRVL 247 (376)
T ss_dssp CHHHHHHH------HHHHHHHHHHHH-HHHHHTTCSCGGGGGGS-HHHHHHHHHTTCCTTTC----------CHHHHHHH
T ss_pred ChhhhHHH------HHHHHHhccccH-HHHHHcCCCCHHHHHHH-HHHHHHHHHHHHHhccc----------cHHHHHHH
Confidence 33467776 899999999999 899886 5899999873 22111111001111111 11455677
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q 039727 283 KVKAIELMLVDALLEANEH 301 (480)
Q Consensus 283 ~~~~~e~ml~~al~~a~~~ 301 (480)
+.+++..|+.+++..+...
T Consensus 248 ~~~~I~~lv~d~i~~~~~~ 266 (376)
T 2dqb_A 248 VRQLLGYFITAAIEATHRR 266 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899999999998776554
No 6
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV}
Probab=99.95 E-value=6.7e-28 Score=253.67 Aligned_cols=130 Identities=20% Similarity=0.213 Sum_probs=98.0
Q ss_pred cChHHHHHhcCHHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCC--CCCChHHH-HHHHHHH
Q 039727 55 LDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLE--LDIDDIDI-QTVKLAG 131 (480)
Q Consensus 55 l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~--l~i~~~d~-~~v~iAa 131 (480)
|.....+||+||+|||||+++|+|++ .||||.||||+|||||+++|+.+++.|....... -+++..+. .+|++||
T Consensus 29 FqRD~~rii~s~~frRL~~~tQv~~~--~~~~~~htR~~Hsl~v~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~a~ 106 (451)
T 2pgs_A 29 FHKDHDRIIFSGAFRRLGRKTQVHPV--SSNDHIHTRLTHSLEVSCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSAC 106 (451)
T ss_dssp HHHHHHHHHHSHHHHGGGGCCCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhhhccCCcccCC--CCCCCcccHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Confidence 44567899999999999999999997 4999999999999999999999999997632111 14677666 4999999
Q ss_pred HhhhcCCCCCcccccccchhhccC--CC---------------CCcHHHHHHHHHHHHHH---hcCCCCChhhhh
Q 039727 132 LLHDVGHGPFSHMFEREFLPRVLS--GS---------------NWTHEDMSLKMIDYIVD---QHYIDIDSGRLD 186 (480)
Q Consensus 132 LlHDiGHgPFSH~~E~~~~~~~~~--~~---------------~~~HE~~s~~ii~~il~---~~~~~~~~~~~~ 186 (480)
||||||||||||++|.++...... |. +|+|+.+|.+|+..+.. ..|++++.+.+.
T Consensus 107 L~HDiGH~PFgH~gE~~l~~~~~~~gg~~~~~~l~~~~~~D~~~fehnaqs~Ril~~l~~~~~~~GlnLT~~~l~ 181 (451)
T 2pgs_A 107 LAHDIGNPPFGHSGEDAIRNWFNQAAGRGWLDAMSETERNDFLNFEGNAQGFRVLTQLEYHQFDGGTRLTYATLG 181 (451)
T ss_dssp HHTTTTCCTTHHHHHHHHHHHHHHHHTTTTTTTSCHHHHHHHHTCCHHHHHHHHHHTTSSBTTTTBTCCBHHHHH
T ss_pred HhhccCCCCccccHHHHHHHHHHhcCCcchhhhcchhhhccccCCchhHHHHHHHHHHhhccccCCCCCCHHHHH
Confidence 999999999999999976432211 11 59999999999998764 247787766553
No 7
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=99.93 E-value=1.2e-26 Score=243.44 Aligned_cols=130 Identities=21% Similarity=0.184 Sum_probs=100.4
Q ss_pred cChHHHHHhcCHHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHc----cCC---CCCCChHH-HHH
Q 039727 55 LDPLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDY----QGL---ELDIDDID-IQT 126 (480)
Q Consensus 55 l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~----~~~---~l~i~~~d-~~~ 126 (480)
|.....+||+||+|||||+++|+|++. +|||.||||+|||||+++|+.+++.|..+ .+. ..++++.+ ..+
T Consensus 31 FqRD~~rii~s~~frRL~~ktQv~~~~--~~~~~htRltHSL~V~~iar~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l 108 (444)
T 3bg2_A 31 FEVDYDRIIFSAPFRSLQDKTQVIPLS--KTDFVHTRLTHSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAI 108 (444)
T ss_dssp HHHHHHHHHHSHHHHHGGGCBCSCC-----CCCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHhCCHHHhhhccCCccCCCC--CCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHH
Confidence 345667999999999999999999975 69999999999999999999999987542 220 11445555 379
Q ss_pred HHHHHHhhhcCCCCCcccccccchhhccCCC-----------------CCcHHHHHHHHHHHHH--HhcCCCCChhhhh
Q 039727 127 VKLAGLLHDVGHGPFSHMFEREFLPRVLSGS-----------------NWTHEDMSLKMIDYIV--DQHYIDIDSGRLD 186 (480)
Q Consensus 127 v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~-----------------~~~HE~~s~~ii~~il--~~~~~~~~~~~~~ 186 (480)
|++|||||||||+||||++|.++......+. +|+|+.+|.+|+..+. ...|++++.+.+.
T Consensus 109 v~~a~L~HDiGH~PFgH~gE~~l~~~~~~~gg~~~~~~l~~~~~~D~~~Fehnaqs~Ril~~l~~~~~~GLnLT~~tl~ 187 (444)
T 3bg2_A 109 VAAAALAHDIGNPPFGHSGEKAIGEFFKNGYGKRYKDSLTAKEYQDLIKFEGNANGFKVLSQSKPGAQGGLRLSYATLG 187 (444)
T ss_dssp HHHHHHHTTTTCCTTHHHHHHHHHHHHHTSGGGGGGGGSCHHHHHHHHTCCHHHHHHHHHHCCBTTBTTTTCCCHHHHH
T ss_pred HHHHHHhcccCCCCccccHHHHHHHHHHhccccchhhccchhhhccccCCchHHHHHHHHHHHhhccCCCccCCHHHHH
Confidence 9999999999999999999997654322211 5999999999998755 3457787766553
No 8
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=98.45 E-value=1.3e-07 Score=90.02 Aligned_cols=106 Identities=19% Similarity=0.231 Sum_probs=73.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHH
Q 039727 88 VHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLK 167 (480)
Q Consensus 88 ~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ 167 (480)
...+++||+.|+.+|..+++.. +. +...+.+||||||||- |+++. .+..|+..|..
T Consensus 31 ~~h~~~H~~rV~~~a~~la~~~--------~~---d~~~l~~AaLLHDIg~-~~~~~------------~~~~H~~~ga~ 86 (220)
T 2pq7_A 31 PAHDISHTFRVMENASEIASRE--------KC---DLQKAIIAALLHDIKR-PHEAL------------TGVDHAESGAE 86 (220)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHH--------TC---CHHHHHHHHHHTTTTH-HHHHH------------HCCCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHc--------CC---CHHHHHHHHHHHcCCC-cccCC------------CcCCHHHHHHH
Confidence 4467999999999999998764 11 4568999999999973 43321 13689999999
Q ss_pred HHHHHHHhcCCCCChhhhhh--hhhhccCCCcccccchhhHHhhhhcCCCCcccccccccc
Q 039727 168 MIDYIVDQHYIDIDSGRLDR--EMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIV 226 (480)
Q Consensus 168 ii~~il~~~~~~~~~~~~~~--~~I~~~~~~~~~~~~~~~l~~Iv~n~~~~lDvDrlDYl~ 226 (480)
+++.++...++ +++.+.. .+|.....+. +..+......||. |||++|.+.
T Consensus 87 ~a~~~L~~~~~--~~~~i~~v~~~I~~H~~~~-~~~~~~~~a~Iv~------dAD~Ldal~ 138 (220)
T 2pq7_A 87 YASGLLPTMGF--DISFVAEVSKAIRSHRYSG-GLTPTSLTGKILQ------DADRLDAIG 138 (220)
T ss_dssp HHHHHGGGGTC--CHHHHHHHHHHHHHCC------CCCSHHHHHHH------HHHHGGGSS
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHcCccc-CCCCCCHHHHHHH------HhhHHhhcc
Confidence 99999987765 3543332 5565554321 1233456678887 899999885
No 9
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=98.41 E-value=2.1e-07 Score=88.19 Aligned_cols=111 Identities=22% Similarity=0.230 Sum_probs=71.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
.+++|++.|+.+|..+.... + .|..++.+||||||||..|+.+ ++..|..++
T Consensus 25 H~~~H~~rV~~~a~~ia~~~--------~---~d~~~v~~AAlLHDig~~~~~~-----------------~~~~~a~~a 76 (209)
T 3b57_A 25 HDWSHIKRVWKLSKEIQSKE--------G---GDLFTIELAALFHDYSDIKLTT-----------------DEQEATKTL 76 (209)
T ss_dssp CCHHHHHHHHHHHHHHHHHH--------C---SCHHHHHHHHHHTTCCC------------------------CHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHc--------C---CCHHHHHHHHHHhccCcccCCC-----------------chHHHHHHH
Confidence 45999999999999988752 1 2457899999999999876533 122577788
Q ss_pred HHHHHhcCCCCChhhhhh--hhhhccCCCcc--cccchhhHHhhhhcCCCCccccccccc-----cccccccCCCC
Q 039727 170 DYIVDQHYIDIDSGRLDR--EMIVTSHASQK--SAKEKQFLYDIVANGRNGIDVDKFDYI-----VRDSRACGLGC 236 (480)
Q Consensus 170 ~~il~~~~~~~~~~~~~~--~~I~~~~~~~~--~~~~~~~l~~Iv~n~~~~lDvDrlDYl-----~RDs~~~Gv~~ 236 (480)
..++.+.++ +++.+.. .+|........ ...+......||. |+||||.| .|-..+.|...
T Consensus 77 ~~~L~~~g~--~~~~~~~V~~~I~~Hs~~~~~~~~~~~~~ea~iv~------dAD~LDalgaigiaR~~~y~g~~~ 144 (209)
T 3b57_A 77 INWMETKEI--PSELIKKIIRIIQSVSFKKGKNTFKALTIEEKIVQ------DADRLDAIGAIGIARTFTYGGAHN 144 (209)
T ss_dssp HHHHHHTTC--CHHHHHHHHHHHHHHC---------CCCHHHHHHH------HHHHHTTSHHHHHHHHHHHHTTTT
T ss_pred HHHHHHCCC--CHHHHHHHHHHHHHcCccccCCCCCCCCHHHHHHc------CHHHHhHHHhHHHHHHHHHHHhcC
Confidence 888887665 4554432 55655432110 1123345678887 89999986 57777877653
No 10
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=98.24 E-value=1.3e-06 Score=83.81 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=64.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
.+++|++.|+.+|..++... + .|..++.+||||||||-..+ .+|+..|..++
T Consensus 25 H~~~H~~rV~~~a~~ia~~~--------~---~d~~~l~~AalLHDig~~k~-----------------~~~~~~ga~~a 76 (223)
T 3dto_A 25 HDWYHIRRVTLMAKAIGEQE--------K---VDVFVVQIAALFHDLIDDKL-----------------VDDPETAKQQL 76 (223)
T ss_dssp -CHHHHHHHHHHHHHHHHHT--------T---CCHHHHHHHHHHHSTTC------------------------CHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHc--------C---CCHHHHHHHHHHhhcccccc-----------------CCCHHHHHHHH
Confidence 45999999999999988641 2 24678999999999996421 24677888899
Q ss_pred HHHHHhcCCCCChhhhhh--hhhhccCCCcc-cccchhhHHhhhhcCCCCccccccccc
Q 039727 170 DYIVDQHYIDIDSGRLDR--EMIVTSHASQK-SAKEKQFLYDIVANGRNGIDVDKFDYI 225 (480)
Q Consensus 170 ~~il~~~~~~~~~~~~~~--~~I~~~~~~~~-~~~~~~~l~~Iv~n~~~~lDvDrlDYl 225 (480)
..+|.+.++ +++.+.. .+|........ ...+......||. |+||||.|
T Consensus 77 ~~~L~~~g~--~~~~i~~V~~~I~~Hs~~~~~~~~p~tlEa~IV~------dADrLDal 127 (223)
T 3dto_A 77 IDWMEAAGV--PSQKIDHTMDIINTISFKGGHGQSLATREAMVVQ------DADRLDAL 127 (223)
T ss_dssp HHHHHTTTC--CHHHHHHHHHHHHCC----------CCHHHHHHH------HHHHGGGS
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHcCCccCCCCCCCCHHHHHHH------hHHHHHHH
Confidence 999987664 4554443 56665432111 1124455678997 89999986
No 11
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=98.23 E-value=8.2e-07 Score=86.14 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=74.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
.+++|++.|+.+|..++.. .+ .|..++.+||||||||-.|--|. ....|+..|..++
T Consensus 25 H~~~H~~rV~~~a~~ia~~--------~~---~d~~~~~~AalLHDig~~~~~~~------------~~~~H~~~ga~~A 81 (239)
T 3gw7_A 25 HDVCHFRRVWATAQKLAAD--------DD---VDMLVILTACYFHDIVSLAKNHP------------QRQRSSILAAEET 81 (239)
T ss_dssp --CCHHHHHHHHHHHHTTT--------SC---SCTTHHHHHHHHTTTTC--------------------CCSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH--------cC---CCHHHHHHHHHHhhcccccccCC------------ccccHHHHHHHHH
Confidence 3499999999999988743 12 23468999999999998653221 1247999999999
Q ss_pred HHHHHh--cCCCCChhhhhh--hhhhccCCCcccccchhhHHhhhhcCCCCcccccccc-----ccccccccCCC
Q 039727 170 DYIVDQ--HYIDIDSGRLDR--EMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDY-----IVRDSRACGLG 235 (480)
Q Consensus 170 ~~il~~--~~~~~~~~~~~~--~~I~~~~~~~~~~~~~~~l~~Iv~n~~~~lDvDrlDY-----l~RDs~~~Gv~ 235 (480)
..++.+ .+++ ++.+.. .+|....... ...+......||. |+||||+ +.|=..+.|..
T Consensus 82 ~~~L~~~~~g~~--~e~i~~V~~~I~~Hs~~~-~~~p~t~Ea~IV~------DADrLDalGAiGIaR~f~y~g~~ 147 (239)
T 3gw7_A 82 RRLLREEFEQFP--AEKIEAVCHAIAAHSFSA-QIAPLTTEAKIVQ------DADRLEALGAIGLARVFAVSGAL 147 (239)
T ss_dssp HHHHHHHTTSSC--TTTTTSTTTGGGSSCTTS-CCCCCSHHHHHHH------HHTGGGGSHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCcC--HHHHHHHHHHHHHcCCCC-CCCCCChHHHHHH------hHHHHHHhhchhHHHHHHHHHHh
Confidence 999988 6653 444432 5665554211 1233455678987 8999998 55666666653
No 12
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=98.17 E-value=8.4e-07 Score=85.19 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=65.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
.+++|++.|+.+|..++.. .+ .|..++.+||||||||...+ ..|+..|..++
T Consensus 25 H~~~H~~rV~~~a~~ia~~--------~~---~d~~~l~~AAlLHDig~~k~-----------------~~h~~~ga~~a 76 (223)
T 3djb_A 25 HDWYHIRRVHKMAISLSEQ--------EG---GNRFIIEMAALLHDVADEKL-----------------NESEEAGMKKV 76 (223)
T ss_dssp TTHHHHHHHHHHHHHHHTT--------TC---SCHHHHHHHHTTHHHHC--C-----------------CSSSTTTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH--------cC---CCHHHHHHHHHHhhcccccc-----------------CCcHHHHHHHH
Confidence 4599999999999998753 12 24678999999999997432 13567778888
Q ss_pred HHHHHhcCCCCChhhhhh--hhhhccCCCcc-cccchhhHHhhhhcCCCCccccccccc
Q 039727 170 DYIVDQHYIDIDSGRLDR--EMIVTSHASQK-SAKEKQFLYDIVANGRNGIDVDKFDYI 225 (480)
Q Consensus 170 ~~il~~~~~~~~~~~~~~--~~I~~~~~~~~-~~~~~~~l~~Iv~n~~~~lDvDrlDYl 225 (480)
..+|...++ +++.+.. .+|........ ...+......||. |+||||.|
T Consensus 77 ~~~L~~~g~--~~~~i~~V~~~I~~Hs~~~~~~~~p~tlea~iV~------dADrLDal 127 (223)
T 3djb_A 77 SDWLEELHV--EEEESKHVLHIIANMSYKGGHGGKVESIEGKLVQ------DADRLDAL 127 (223)
T ss_dssp HHHHHHTCC--CHHHHHHHHHHTTCCC-----------HHHHHHH------HHHHTTTS
T ss_pred HHHHHHCCC--CHHHHHHHHHHHHHhCCccCCCCCCCCHHHHHHH------hHHHHHHH
Confidence 888888664 4554443 55655432111 1124456678987 89999986
No 13
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=98.01 E-value=6.7e-06 Score=79.10 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=64.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKMI 169 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~ii 169 (480)
.+++|++.|+.+|..+.... +. |..++.+||||||||-..+ .+|+..|..++
T Consensus 30 H~~~H~~rV~~~a~~ia~~~--------~~---d~~ll~lAAlLHDigk~k~-----------------~~~~~~ga~~a 81 (231)
T 2pjq_A 30 HGRDHLQRVNRLARRLAKDE--------GA---NLNLTLAAAWLHDVIDDKL-----------------MANPAKAHQDL 81 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHH--------TC---CHHHHHHHHHHHHHHC--------------------------CHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHc--------CC---CHHHHHHHHHHHcCCcccC-----------------CChHHHHHHHH
Confidence 45999999999999988752 12 4578999999999996311 13555678888
Q ss_pred HHHHHhcCCCCChhhhhh--hhhhccCCCcc--cccchhhHHhhhhcCCCCccccccccc
Q 039727 170 DYIVDQHYIDIDSGRLDR--EMIVTSHASQK--SAKEKQFLYDIVANGRNGIDVDKFDYI 225 (480)
Q Consensus 170 ~~il~~~~~~~~~~~~~~--~~I~~~~~~~~--~~~~~~~l~~Iv~n~~~~lDvDrlDYl 225 (480)
..+|...++ +++.+.. .+|........ ...+......||. |+||||.|
T Consensus 82 ~~~L~~~g~--~~~~~~~V~~~I~~Hs~~~~~~~~~~~~~ea~Iv~------dAD~LDal 133 (231)
T 2pjq_A 82 IVQLNAQNV--TADDQTAIFAIIDHMSFSKSFNGPQKLSLEGQVVQ------DADRLDAI 133 (231)
T ss_dssp HHHHHTTTC--CHHHHHHHHHHHTSCCTGGGGGCCCCCCSHHHHHH------HHHHHTTS
T ss_pred HHHHHHCCC--CHHHHHHHHHHHHHcCCccccCCCCCCCHHHHHHH------HHHHHHhh
Confidence 888887654 4554433 56655433211 1123345678887 89999987
No 14
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=97.87 E-value=1.4e-05 Score=74.14 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=62.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhh----------ccCCCCC
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPR----------VLSGSNW 159 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~----------~~~~~~~ 159 (480)
.+|+||++|+.+|..+++.+ +++.+ .+.+||||||||..-- -+. ++.. .......
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~--------g~~~~---~~~~agLLHDIGk~~~---~~~-il~~~~~~~~~l~~~e~~~~~ 82 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLY--------GADQQ---KAELAAIFHDYAKFRD---KNE-MRTLIREKLSQQDILFYGDEL 82 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TCCHH---HHHHHHHHTTTTTTSC---HHH-HHHHHHHHCSCCGGGGSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHH--------CcCHH---HHHHHHHHHHHcCCCC---HHH-HHHHHHhcCCCCCHHHHHHHh
Confidence 58999999999999999874 34432 4789999999998621 011 1100 0012235
Q ss_pred cHHHHHHHHHHHHHHhcCCCCChhhhhhhhhhccCCCcccccchhhHHhhhhcCCCCccccccc
Q 039727 160 THEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFD 223 (480)
Q Consensus 160 ~HE~~s~~ii~~il~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~l~~Iv~n~~~~lDvDrlD 223 (480)
.|-..|..+++.. +++ +++.+. +.|..+.. +.++...+..||. .||.++
T Consensus 83 ~H~~~G~~il~~~---~~~--~~~~i~-~aI~~Hh~---g~~~~~~~~~Iv~------vAD~i~ 131 (188)
T 2o08_A 83 LHAPCGAYYVREE---VGI--EDEDVL-QAIRFHTT---GRPNMSLLEKIIF------LADYIE 131 (188)
T ss_dssp SHHHHHHHHHHHH---HCC--CCHHHH-HHHHTTTT---CCTTCCHHHHHHH------HHHHHS
T ss_pred hHHHHHHHHHHHc---cCC--ChHHHH-HHHHHhcc---CCCCCCHHHHhhh------hhccCC
Confidence 7999998887653 343 233343 45554443 2233445667776 466643
No 15
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=97.83 E-value=2.9e-05 Score=72.15 Aligned_cols=98 Identities=21% Similarity=0.228 Sum_probs=59.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhc-----------cCCCC
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRV-----------LSGSN 158 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~-----------~~~~~ 158 (480)
.+|+||++|+.+|..+++.+ +++.+ .+.+||||||||..-.. +. ++... .....
T Consensus 19 ~~~~Hs~~Va~~A~~lA~~~--------g~d~~---~~~~AgLLHDiGk~~~~---~~-il~~~~~~~~~l~~~E~~~~~ 83 (190)
T 3ccg_A 19 KRYKHSLGVMDTAVRLAGIY--------NEDTE---KARIAGLVHDCAKKLPG---EK-IIEICTNEGYELGDEDIRNSY 83 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TCCHH---HHHHHHHHTTTTTTSCH---HH-HHHHHHHTTCCCCHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH--------CcCHH---HHHHHHHHHHhcCCCCH---HH-HHHHHHHcCCCCCHHHHhHHH
Confidence 58999999999999999875 34432 47899999999996321 11 11100 01234
Q ss_pred CcHHHHHHHHHHHHHHhcCCCCChhhhhhhhhhccCCCcccccchhhHHhhhh
Q 039727 159 WTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVA 211 (480)
Q Consensus 159 ~~HE~~s~~ii~~il~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~l~~Iv~ 211 (480)
..|-..|..+++.. ++ ++++.+. ..|..+.. +.++...+..||.
T Consensus 84 ~~H~~~Ga~il~~~---~~--~~~~~i~-~aI~~Hh~---g~~~~~~~~~Iv~ 127 (190)
T 3ccg_A 84 LLHGLAGRILAKKV---IG--IDDEDVL-NAIEFHTT---GRPNMSLLEKIIY 127 (190)
T ss_dssp C-CHHHHHHHHHHT---TC--CCCHHHH-HHHHTTTT---CCSSCCHHHHHHH
T ss_pred cchHHHHHHHHHHh---cC--CCcHHHH-HHHHHhcC---CCCCCCHHHHHHH
Confidence 57989998877641 34 3233343 45555443 2233445667776
No 16
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=97.78 E-value=2.6e-05 Score=74.65 Aligned_cols=100 Identities=19% Similarity=0.166 Sum_probs=66.1
Q ss_pred CchhHHHHHHHHHHHH-HHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhccCCCCCcHHHHHHHH
Q 039727 90 SRFEHSLGVYWLAGTA-VQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRVLSGSNWTHEDMSLKM 168 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~-~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~~~~~~~~HE~~s~~i 168 (480)
.+++|++.|+.+|..+ ... .+. |...+.+||||||+|-..+ . |+..|..+
T Consensus 25 H~~~H~~rV~~~a~~i~a~~--------~~~---d~~~l~lAAlLHDigk~~~----------------~--~~~~ga~~ 75 (225)
T 2qgs_A 25 HDIAHVERVYNNACYIAKRE--------NIT---DTLVIELSSLLHDTVDSKL----------------T--DEILAYDQ 75 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--------TCS---CCHHHHHHHHHTTTTCCSS----------------S--CHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhc--------cCC---CHHHHHHHHHHHcCCCCCC----------------C--cHHHHHHH
Confidence 4799999999999988 643 122 3468999999999996311 1 35568888
Q ss_pred HHHHHHhcCCCCChhhhhh--hhhhccCCCc--ccccchhhHHhhhhcCCCCcccccccccc
Q 039727 169 IDYIVDQHYIDIDSGRLDR--EMIVTSHASQ--KSAKEKQFLYDIVANGRNGIDVDKFDYIV 226 (480)
Q Consensus 169 i~~il~~~~~~~~~~~~~~--~~I~~~~~~~--~~~~~~~~l~~Iv~n~~~~lDvDrlDYl~ 226 (480)
+..++.+.++ +++.+.. .+|....... ....+......||. |+|++|.|.
T Consensus 76 a~~~L~~~g~--~~~~i~~V~~~I~~Hs~~~~~~~~~~~~~e~~Iv~------dAD~LDalG 129 (225)
T 2qgs_A 76 LKQFLSTLDL--SSEISQQVLYIIKHMSYRAGKNNHVKLSIDGEIVR------DADRLDAIG 129 (225)
T ss_dssp HHHHHHTTTC--CHHHHHHHHHHHHTTC-------CCCCCHHHHHHH------HHHHHTTSH
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHH------hhHHHHHhh
Confidence 8888887664 4554432 5565443211 11123456678887 899999873
No 17
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=97.39 E-value=0.0001 Score=68.85 Aligned_cols=98 Identities=27% Similarity=0.260 Sum_probs=57.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchhhc----------cCCCCC
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLPRV----------LSGSNW 159 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~~~----------~~~~~~ 159 (480)
.+|+||++|+.+|..+++.+ +++. ..+.+||||||||..-- ...++... ......
T Consensus 26 ~~~~Hs~~Va~~A~~lA~~~--------g~d~---~~~~~AgLLHDIGK~~~----~~~il~~~~~~~~~l~~~E~~~~~ 90 (196)
T 2ogi_A 26 KRFNHVLGVERAAIELAERY--------GYDK---EKAGLAALLHDYAKELS----DDEFLRLIDKYQPDPDLKKWGNNI 90 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TCCH---HHHHHHHHHTTTTTTCC----HHHHHHHHHHHCCCTGGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------CcCH---HHHHHHHHHHHcCCcCC----HHHHHHHHHhcCCCCCHHHHHHHh
Confidence 58999999999999999875 3443 34889999999999611 11111100 001124
Q ss_pred cHHHHHHHHHHHHHHhcCCCCChhhhhhhhhhccCCCcccccchhhHHhhhh
Q 039727 160 THEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVA 211 (480)
Q Consensus 160 ~HE~~s~~ii~~il~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~l~~Iv~ 211 (480)
.|-..|..+++.. +++ +++.+. +.|..+.. +.++...+..||.
T Consensus 91 ~H~~~G~~ll~~~---~~~--~~~~i~-~aI~~Hh~---g~~~~~~~~~Iv~ 133 (196)
T 2ogi_A 91 WHGLVGIYKIQED---LAI--KDQDIL-AAIAKHTV---GSAQMSTLDKIVY 133 (196)
T ss_dssp HHHHTHHHHHHHH---SCC--CCHHHH-HHHHTTTT---CCSSCCHHHHHHH
T ss_pred ccHHHHHHHHHHc---cCC--CcHHHH-HHHHHhcC---CCCCCCHHHHhhh
Confidence 5888888776642 343 233343 45554443 2233445667776
No 18
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=96.69 E-value=0.001 Score=67.06 Aligned_cols=44 Identities=32% Similarity=0.355 Sum_probs=37.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHH-HHHHHHhhhcCCC
Q 039727 88 VHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQT-VKLAGLLHDVGHG 139 (480)
Q Consensus 88 ~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~-v~iAaLlHDiGHg 139 (480)
....|+||+.|+.+|..+++.+ ++++.+... +.+||||||||-.
T Consensus 164 ~~~~~~Hs~~Va~la~~la~~l--------gl~~~~~~~~l~~aaLLHDIGk~ 208 (328)
T 3tm8_A 164 DKTISHHGVTVSTLSIALAQKL--------GITDPKKTQLLTLGALLHDYGHH 208 (328)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHH--------TCCCHHHHHHHHHHHHHTTGGGT
T ss_pred CchHHHHHHHHHHHHHHHHHHc--------CcCHHHHHHHHHHHHHHhcCCcc
Confidence 3456999999999999999874 677788888 9999999999954
No 19
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=96.65 E-value=0.00013 Score=72.75 Aligned_cols=113 Identities=20% Similarity=0.231 Sum_probs=68.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccchh---h--ccCC--------
Q 039727 90 SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFLP---R--VLSG-------- 156 (480)
Q Consensus 90 tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~~---~--~~~~-------- 156 (480)
..+.||+.|+.+|..+++.+ +.+ +...+.+||||||||-......+...+.. . ..++
T Consensus 118 ~~~~hs~~va~~a~~la~~~--------~~~--~~~~~~~agllHDIGkl~l~~~~p~~~~~il~~~~~~~~~l~~~E~~ 187 (305)
T 3hc1_A 118 TLWAHSLGVARIAKLIAERT--------GFL--NPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITFGQAEER 187 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--------TCS--CHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc--------CCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 45899999999999998764 332 24568999999999987655433211100 0 0001
Q ss_pred -CCCcHHHHHHHHHHHHHHhcCCCCChhhhhhhhhhccCCCcccccchhhHHhhhhcCCCCcccccccccc
Q 039727 157 -SNWTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHASQKSAKEKQFLYDIVANGRNGIDVDKFDYIV 226 (480)
Q Consensus 157 -~~~~HE~~s~~ii~~il~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~l~~Iv~n~~~~lDvDrlDYl~ 226 (480)
.+.+|.++|..+++. +++ + +.+. +.|..+.++.....+...+..||.- ||.+|-+.
T Consensus 188 ~~~~~H~~iG~~ll~~----w~l--p-~~i~-~~I~~HHe~~~~~~~~~~~a~Iv~l------AD~~~~~~ 244 (305)
T 3hc1_A 188 LFGTSHCEVGFALAKR----WSL--N-EFIC-DTILYHHDIEAVPYKQAAIVAMVAF------ADEYCTLR 244 (305)
T ss_dssp HHSSCHHHHHHHHHHH----TTC--C-HHHH-HHHHHTTCGGGCSSSCCHHHHHHHH------HHHHHHHT
T ss_pred HHCCCHHHHHHHHHHH----cCC--C-HHHH-HHHHHhCChhhccccccHHHHHHHH------HHHHHHHh
Confidence 136899999888764 443 2 3343 4555554432222223456678773 77777764
No 20
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A*
Probab=96.40 E-value=0.0064 Score=61.96 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=56.9
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccc---hhhccCCCCCcH
Q 039727 85 PGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREF---LPRVLSGSNWTH 161 (480)
Q Consensus 85 PgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~---~~~~~~~~~~~H 161 (480)
+..-|+ |.|..-|++.+..++....- .-.+++.|+.++.+||||||+||.-++-.|.-.- +.... +...-+
T Consensus 79 ~npYHN-~~HA~dV~q~~~~ll~~~~l----~~~l~~le~~alliAAl~HDv~HpG~nN~fli~~~s~LA~lY-nd~SvL 152 (353)
T 1zkl_A 79 QNPYHN-AVHAADVTQAMHCYLKEPKL----ANSVTPWDILLSLIAAATHDLDHPGVNQPFLIKTNHYLATLY-KNTSVL 152 (353)
T ss_dssp TSSSSS-HHHHHHHHHHHHHHHTSHHH----HTTCCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHT-TTSSHH
T ss_pred CCCCcC-HHHHHHHHHHHHHHHhhhHH----hhhCCHHHHHHHHHHHHHhccCCCCCCcHHHHhcCCHHHHHc-CCCCHH
Confidence 345677 99999999998888753211 1247889999999999999999976555443210 00111 123446
Q ss_pred HHHHHHHHHHHHHhcCC
Q 039727 162 EDMSLKMIDYIVDQHYI 178 (480)
Q Consensus 162 E~~s~~ii~~il~~~~~ 178 (480)
|.......-.++.+.++
T Consensus 153 EnhH~a~a~~iL~~~ni 169 (353)
T 1zkl_A 153 ENHHWRSAVGLLRESGL 169 (353)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 77666665556665554
No 21
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=95.96 E-value=0.0026 Score=62.41 Aligned_cols=133 Identities=14% Similarity=0.218 Sum_probs=69.7
Q ss_pred CCCCCcchhhheeeccceecccccchHHhhcccccccccccccccCCCCC-cccChHHHH--HhcCHHHHhhhcccccCc
Q 039727 3 APPKPKIHFLCFRVLSEVTMGASSTDELLKSNSSQKERYSKHVHDNVHGN-IYLDPLALQ--FIDTEEFQRLRDLKQLGL 79 (480)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~DpvhG~-I~l~~~~~~--iIdtp~fQRLR~IkQLG~ 79 (480)
-|+.|.+-.+-.+.++.=+..+..-.+.+..-+.+.....|+++-|.||. -+++....+ ++... ++|++-..-.
T Consensus 23 LP~lp~~~~~l~~~~~~~~~~~~~la~~I~~Dp~Ls~~lLr~aNS~~~~~~~~i~si~~Av~~LG~~---~l~~l~~~~~ 99 (281)
T 3i7a_A 23 LPTLPEVAMRVQEVVGRPDSSLKQVAEIIGQDAAISARIIKVANSALYSRGVPAENINSAVTRIGLT---QIKSIATSVA 99 (281)
T ss_dssp CCCCCHHHHHHHHHHTSTTCCHHHHHHHHHTCHHHHHHHHHHHHSTTTCSSSCCCSHHHHHHHHCTT---THHHHHHHHT
T ss_pred CCCccHHHHHHHHHHcCCCCCHHHHHHHHHHCHHHHHHHHHHHhhHHhCCCCCCCCHHHHHHHHhHH---HHHHHHHHHH
Confidence 36666654443343433233333333333333334445567777777774 234443332 23332 2222222111
Q ss_pred cccccCCCC-------CCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCc
Q 039727 80 SHLVYPGAV-------HSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFS 142 (480)
Q Consensus 80 ~~~vyPgA~-------HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFS 142 (480)
..-+|++.. ...+.||+.|+.+|..+++.+.... +.+..+...+.+||||||||-.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~la~~~~~~~----~~~~~~~~~~~laGLLHdiGkl~l~ 165 (281)
T 3i7a_A 100 MEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKH----PGSGLNYDTLTLAGLVHNIGALPVL 165 (281)
T ss_dssp TGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTCCCCHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccCCCCHHHHHHHHHHHHCCHHHHH
Confidence 112344322 2368999999999999998764321 1122334568999999999987643
No 22
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Probab=95.61 E-value=0.0084 Score=61.61 Aligned_cols=88 Identities=20% Similarity=0.167 Sum_probs=59.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccch---hhccCCCCCcHH
Q 039727 86 GAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFL---PRVLSGSNWTHE 162 (480)
Q Consensus 86 gA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~---~~~~~~~~~~HE 162 (480)
..-|+ |.|..-|++.+..++..-. ..-.+++.++.++.+||||||+||.-++-.|.-.-. .... +...-+|
T Consensus 80 npYHN-~~HA~dV~q~~~~ll~~~~----l~~~l~~le~~alliAAl~HDvdHpG~nN~fli~t~s~LA~lY-nd~SvLE 153 (377)
T 1f0j_A 80 VAYHN-SLHAADVAQSTHVLLSTPA----LDAVFTDLEILAAIFAAAIHDVDHPGVSNQFLINTNSELALMY-NDESVLE 153 (377)
T ss_dssp SSSSS-HHHHHHHHHHHHHHHTCGG----GTTTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHT-TTSSHHH
T ss_pred CCccC-HHHHHHHHHHHHHHHhcch----hhhhCCHHHHHHHHHHHHHcCCCCCCCCCHHHHhcCCHHHHHc-CCCCHHH
Confidence 35677 9999999999988775311 122478899999999999999999866655542100 0111 2234577
Q ss_pred HHHHHHHHHHHHhcCCC
Q 039727 163 DMSLKMIDYIVDQHYID 179 (480)
Q Consensus 163 ~~s~~ii~~il~~~~~~ 179 (480)
.....+.-.++.+.+.+
T Consensus 154 nhH~a~a~~lL~~~~~n 170 (377)
T 1f0j_A 154 NHHLAVGFKLLQEEHCD 170 (377)
T ss_dssp HHHHHHHHHGGGSTTCC
T ss_pred HHHHHHHHHHHcccccc
Confidence 77777766677665544
No 23
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2
Probab=95.56 E-value=0.012 Score=60.34 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=56.9
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccc---hhhccCCCCCcH
Q 039727 85 PGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREF---LPRVLSGSNWTH 161 (480)
Q Consensus 85 PgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~---~~~~~~~~~~~H 161 (480)
+..-|+ |.|..-|++.+..++....- .-.+++.|..++.+||||||+||.=++-.|.-.- +....+ ...-+
T Consensus 78 ~npYHN-~~HA~dV~q~~~~ll~~~~l----~~~l~~le~~alliAAl~HDv~HpG~nN~fli~t~s~LA~lYn-d~SvL 151 (365)
T 1taz_A 78 KNPYHN-QIHAADVTQTVHCFLLRTGM----VHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYN-DRSVL 151 (365)
T ss_dssp CCSSSS-HHHHHHHHHHHHHHHHHHSG----GGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHT-TSSHH
T ss_pred CCCCcC-HHHHHHHHHHHHHHHHhhhH----HhhCCHHHHHHHHHHHHHhcCCCCCCccHHHHhcCChHHHHcC-CCcHH
Confidence 567788 99999999999888765311 1247888999999999999999976655543210 000111 13456
Q ss_pred HHHHHHHHHHHHHhc
Q 039727 162 EDMSLKMIDYIVDQH 176 (480)
Q Consensus 162 E~~s~~ii~~il~~~ 176 (480)
|.....+.-.++.+.
T Consensus 152 EnhH~a~a~~iL~~~ 166 (365)
T 1taz_A 152 ENHHISSVFRLMQDD 166 (365)
T ss_dssp HHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHhCc
Confidence 666666655666543
No 24
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=95.49 E-value=0.009 Score=60.34 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=58.2
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccc---hhhccCCCCCcH
Q 039727 85 PGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREF---LPRVLSGSNWTH 161 (480)
Q Consensus 85 PgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~---~~~~~~~~~~~H 161 (480)
+..-|+ |.|..-|++.+..++.... -.+++.|..++.+||||||+||.-++-.|.-.- +....++ .-+
T Consensus 76 ~npYHN-~~HA~dV~q~~~~ll~~~~------~~l~~le~~alliAAl~HDv~HpG~~N~fli~~~~~LA~lYnd--SvL 146 (331)
T 2our_A 76 RVPYHN-WKHAVTVAHCMYAILQNNH------TLFTDLERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYST--STM 146 (331)
T ss_dssp SCSSSS-HHHHHHHHHHHHHHHHTTG------GGSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHTTCHHHHHSCS--SHH
T ss_pred CCccch-HHHHHHHHHHHHHHHHhcc------ccCCHHHHHHHHHHHHHccCCCCCCCCcHHHhcCCHHHHhcCC--chh
Confidence 345677 9999999999988886541 147889999999999999999976555443210 0011122 457
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 039727 162 EDMSLKMIDYIVDQHYID 179 (480)
Q Consensus 162 E~~s~~ii~~il~~~~~~ 179 (480)
|.......-.++...+.+
T Consensus 147 E~hH~a~a~~iL~~~~~n 164 (331)
T 2our_A 147 EQHHFSQTVSILQLEGHN 164 (331)
T ss_dssp HHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHHHhccccc
Confidence 777777766677654443
No 25
>3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A*
Probab=95.46 E-value=0.012 Score=59.79 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=45.6
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCccccc
Q 039727 84 YPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFE 146 (480)
Q Consensus 84 yPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E 146 (480)
-+..-|+ |.|..-|++.+..++...... .-.+++-|..++.+||||||+||.-++-.|.
T Consensus 94 ~~npYHN-~~HA~dV~q~~~~ll~~~~~~---~~~l~~le~~alliAAl~HDvdHpG~nN~fl 152 (345)
T 3v93_A 94 RPNPYHN-AIHAADVLQGTFSLVSAAKPL---MEHLTPLECKAAAFAALTHDVCHPGRTNAFL 152 (345)
T ss_dssp CCCSSSS-HHHHHHHHHHHHHHHHHCHHH---HHHCCHHHHHHHHHHHHHTTTTCCSSCHHHH
T ss_pred CCCCCcC-hHHHHHHHHHHHHHHHhchHh---hhcCCHHHHHHHHHHHHHhcCCCCCCCCHHH
Confidence 3446777 999999999999888763200 0136888999999999999999987776654
No 26
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=95.45 E-value=0.012 Score=59.66 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=44.6
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCccccc
Q 039727 85 PGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFE 146 (480)
Q Consensus 85 PgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E 146 (480)
...-|+ |.|..-|++.+..++....- .-.+++-+..++.+||||||+||.-++-.|.
T Consensus 78 ~npYHN-~~HA~dV~q~~~~ll~~~~l----~~~l~~le~~alliAal~HDv~HpG~nN~fl 134 (345)
T 3itu_A 78 DPPYHN-WMHAFSVSHFCYLLYKNLEL----TNYLEDIEIFALFISCMCHDLDHRGTNNSFQ 134 (345)
T ss_dssp CCSSSS-HHHHHHHHHHHHHHHHHHCG----GGTSCHHHHHHHHHHHHHTTTTCCSCCHHHH
T ss_pred CCCCcC-cHHHHHHHHHHHHHHhccch----hhhhhHHHHHHHHHHHHHhcCCCCCCCCHHH
Confidence 345677 99999999998887765321 1247888999999999999999987776664
No 27
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ...
Probab=95.35 E-value=0.012 Score=59.92 Aligned_cols=88 Identities=23% Similarity=0.206 Sum_probs=57.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccc---hhhccCCCCCcHH
Q 039727 86 GAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREF---LPRVLSGSNWTHE 162 (480)
Q Consensus 86 gA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~---~~~~~~~~~~~HE 162 (480)
..-|+ |.|..-|++.+..++..- +..-.+++.|+.++.+||||||+||.=++-.|.-.- +.... +...-+|
T Consensus 93 npYHN-~~HA~dV~q~~~~ll~~~----~l~~~l~~le~~alliAAl~HDv~HpG~nN~fli~t~s~LA~lY-nd~SvLE 166 (349)
T 1y2k_A 93 VAYHN-NIHAADVVQSTHVLLSTP----ALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMY-NDSSVLE 166 (349)
T ss_dssp CSSSS-HHHHHHHHHHHHHHHTCG----GGTTTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHH-TTSSHHH
T ss_pred CCccC-HHHHHHHHHHHHHHHhhh----hHHhhcCHHHHHHHHHHHHhccCCCCCCCcHHHHhcCCHHHHHc-CCCCHHH
Confidence 35677 999999999998877531 112247899999999999999999986665554210 00011 1134567
Q ss_pred HHHHHHHHHHHHhcCCC
Q 039727 163 DMSLKMIDYIVDQHYID 179 (480)
Q Consensus 163 ~~s~~ii~~il~~~~~~ 179 (480)
.......-.++.+.+.+
T Consensus 167 nhH~a~a~~lL~~~~~n 183 (349)
T 1y2k_A 167 NHHLAVGFKLLQEENCD 183 (349)
T ss_dssp HHHHHHHHHGGGSTTCC
T ss_pred HHHHHHHHHHHcccccc
Confidence 77766666666655544
No 28
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=95.25 E-value=0.0054 Score=60.54 Aligned_cols=102 Identities=8% Similarity=0.021 Sum_probs=57.7
Q ss_pred HHhhcccccccccccccccCCCCC-cccChHHHH--HhcCHHHHhhhcccccCccccccCCC-------CCCchhHHHHH
Q 039727 29 ELLKSNSSQKERYSKHVHDNVHGN-IYLDPLALQ--FIDTEEFQRLRDLKQLGLSHLVYPGA-------VHSRFEHSLGV 98 (480)
Q Consensus 29 ~~~~~~~~~~~~~~k~i~DpvhG~-I~l~~~~~~--iIdtp~fQRLR~IkQLG~~~~vyPgA-------~HtRFeHSLGv 98 (480)
+.+..-+.+.....++++-|.+|. -++.....+ ++.. +++|++-..-...-.|++. ....+.||+.|
T Consensus 56 ~~i~~Dp~Ls~~lLr~aNS~~~~~~~~i~si~~Av~~LG~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~v 132 (297)
T 1vqr_A 56 EIISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGV---GNIINIVMADSIRDNFKIDVSPYGLNTQNFLKTCNEE 132 (297)
T ss_dssp HHHHTCHHHHHHHHHHHTSGGGTCTTCCCSHHHHHHHHCH---HHHHHHHHCCCTTCCCCCCCGGGTCCHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHcccccCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 334444444445556777777664 244443333 3333 3333333221111223321 11368999999
Q ss_pred HHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcc
Q 039727 99 YWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSH 143 (480)
Q Consensus 99 ~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH 143 (480)
+.+|..++..+ ...+...+.+||||||||-..+..
T Consensus 133 a~~a~~la~~~----------~~~~~e~a~~aGLLHDIGkl~l~~ 167 (297)
T 1vqr_A 133 ATFIANWLNDE----------DKKLSHLLVPCAMLLRLGIVIFSN 167 (297)
T ss_dssp HHHHHHHHTTT----------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----------cCCCHHHHHHHHHHHHccHHHHHH
Confidence 99999887542 245567789999999999876544
No 29
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Probab=95.25 E-value=0.034 Score=56.49 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=58.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccc---hhhccCCCCCcHH
Q 039727 86 GAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREF---LPRVLSGSNWTHE 162 (480)
Q Consensus 86 gA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~---~~~~~~~~~~~HE 162 (480)
..-|+ |.|..-|++.+..++... +-.-.+++.|..++.+||||||+||.-++-.|.-.- +.... +...-+|
T Consensus 98 npYHN-~~HA~dV~q~~~~ll~~~----~l~~~l~~le~~alliAAl~HDv~HpG~~N~fli~~~s~LA~lY-nd~SvLE 171 (347)
T 1tbf_A 98 VAYHN-WRHAFNTAQCMFAALKAG----KIQNKLTDLEILALLIAALSHDLDHPGVSNQFLINTNSELALMY-NDESVLE 171 (347)
T ss_dssp SSSSS-HHHHHHHHHHHHHHHHTT----CCGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHT-TTSSHHH
T ss_pred CCCcC-HHHHHHHHHHHHHHHHcc----cccccCCHHHHHHHHHHHHHccCCCCCCCCchHHhcCCHHHHHc-CCCcHHH
Confidence 45677 999999999998887541 111247889999999999999999976665543210 00011 2234567
Q ss_pred HHHHHHHHHHHHhcCCC
Q 039727 163 DMSLKMIDYIVDQHYID 179 (480)
Q Consensus 163 ~~s~~ii~~il~~~~~~ 179 (480)
.......-.++.+.+.+
T Consensus 172 nhH~a~a~~iL~~~~~n 188 (347)
T 1tbf_A 172 HHHFDQCLMILNSPGNQ 188 (347)
T ss_dssp HHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHcCcccc
Confidence 77777666677655543
No 30
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major}
Probab=95.24 E-value=0.011 Score=60.50 Aligned_cols=90 Identities=19% Similarity=0.121 Sum_probs=57.8
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccch---hhccC--CCCC
Q 039727 85 PGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFL---PRVLS--GSNW 159 (480)
Q Consensus 85 PgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~---~~~~~--~~~~ 159 (480)
+..-|+ |.|..-|++.+..++..- +..-.+++.|..++.+||||||+||.-.+-.|.-.-. ....+ +...
T Consensus 96 ~npYHN-~~HA~dV~q~~~~ll~~~----~l~~~l~~le~~alliAAl~HDv~HpG~nN~fli~~~s~LA~lYnd~~n~S 170 (359)
T 2r8q_A 96 RVPYHN-FYHVVDVCQTLHTYLYTG----KASELLTELECYVLLVTALVHDLDHMGVNNSFYLKTDSPLGILSSASGNNS 170 (359)
T ss_dssp SCSSSS-HHHHHHHHHHHHHHHHTS----CGGGGSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHTTCHHHHHHHHHSCCC
T ss_pred CCcccc-HHHHHHHHHHHHHHHHcc----cchhcccHHHHHHHHHHHHHhcCCCCCCCchHhHhcCCHHHHHcCCCCCCC
Confidence 345677 999999999988877531 1112478899999999999999999766654432100 00011 1134
Q ss_pred cHHHHHHHHHHHHHHhcCCC
Q 039727 160 THEDMSLKMIDYIVDQHYID 179 (480)
Q Consensus 160 ~HE~~s~~ii~~il~~~~~~ 179 (480)
-+|.......-.++.+.+.+
T Consensus 171 vLE~hH~a~a~~iL~~~~~n 190 (359)
T 2r8q_A 171 VLEVHHCSLAIEILSDPAAD 190 (359)
T ss_dssp HHHHHHHHHHHHHHTSTTTC
T ss_pred hHHHHHHHHHHHHHhccCcc
Confidence 56777776666677654443
No 31
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A*
Probab=95.01 E-value=0.013 Score=59.19 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=43.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCccccc
Q 039727 85 PGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFE 146 (480)
Q Consensus 85 PgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E 146 (480)
+..-|+ |.|..-|++.+..++..-.- ...+++.|..++.+||||||+||.-++-.|.
T Consensus 71 ~npYHN-~~Ha~dV~q~~~~~l~~~~l----~~~l~~le~~alliAal~HDv~HpG~nN~fl 127 (329)
T 3dyn_A 71 NNPFHN-FRHCFCVAQMMYSMVWLCSL----QEKFSQTDILILMTAAICHDLDHPGYNNTYQ 127 (329)
T ss_dssp CCSSSS-HHHHHHHHHHHHHHHHHTTH----HHHSCHHHHHHHHHHHHHTTTTCCSSCHHHH
T ss_pred CCCCcC-cHHHhHHHHHHHHHHHhhhH----hhcCCHHHHHHHHHHHHHhcCCCCCCCCHHH
Confidence 345677 99999999998877754210 0136788899999999999999987776654
No 32
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A*
Probab=94.98 E-value=0.017 Score=58.49 Aligned_cols=56 Identities=23% Similarity=0.252 Sum_probs=43.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCccccc
Q 039727 86 GAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFE 146 (480)
Q Consensus 86 gA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E 146 (480)
..-|+ |.|..-|++.+..++....- .-.+++-+..++.+||||||+||.-++-.|.
T Consensus 72 npYHN-~~Ha~dV~q~~~~~l~~~~l----~~~l~~~e~~all~Aal~HD~~HpG~nN~fl 127 (338)
T 3ecm_A 72 NPYHN-STHSADVLHATAYFLSKERI----KETLDPIDEVAALIAATIHDVDHPGRTNSFL 127 (338)
T ss_dssp SSSSS-HHHHHHHHHHHHHHHTSHHH----HTTSCHHHHHHHHHHHHHTTTTCCSSCHHHH
T ss_pred CCCcC-cHHHHHHHHHHHHHHHhcch----hhhhhHHHHHHHHHHHHHhccCCCCccchHH
Confidence 46677 99999999988777653211 1247888999999999999999987776654
No 33
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Probab=94.78 E-value=0.023 Score=60.52 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=53.0
Q ss_pred HHHhhhcccccCccc-----------ccc-CCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhh
Q 039727 67 EFQRLRDLKQLGLSH-----------LVY-PGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLH 134 (480)
Q Consensus 67 ~fQRLR~IkQLG~~~-----------~vy-PgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlH 134 (480)
.|+++.-++.++... --| +..-|+ |.|..-|++.+..++....- .-.+++-|..++.+|||||
T Consensus 218 mF~~~gL~~~f~I~~~~L~rFL~~Ve~~Y~~nPYHN-~~HA~DV~Q~~~~ll~~~~l----~~~ls~lE~lAlliAAl~H 292 (533)
T 3qi3_A 218 MYHDLGLVRDFSINPVTLRRWLFCVHDNYRNNPFHN-FRHCFCVAQMMYSMVWLCSL----QEKFSQTDILILMTAAICH 292 (533)
T ss_dssp HHHHTTHHHHTTCCHHHHHHHHHHHHHTSCCCSSSS-HHHHHHHHHHHHHHHHHTTG----GGTSCHHHHHHHHHHHHHT
T ss_pred HHHHcCchhhcCCCHHHHHHHHHHHHHccCCCCCcC-hHHHhHHHHHHHHHHHhccc----hhhccHHHHHHHHHHHHHh
Confidence 567665555554421 012 345677 99999999998877754211 1247888999999999999
Q ss_pred hcCCCCCccccc
Q 039727 135 DVGHGPFSHMFE 146 (480)
Q Consensus 135 DiGHgPFSH~~E 146 (480)
|+||.-++-.|.
T Consensus 293 DvdHPG~nN~Fl 304 (533)
T 3qi3_A 293 DLDHPGYNNTYQ 304 (533)
T ss_dssp TTTCCSSCHHHH
T ss_pred ccCCCCCCCHHH
Confidence 999987776664
No 34
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Probab=94.60 E-value=0.028 Score=57.73 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=43.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCccccc
Q 039727 86 GAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFE 146 (480)
Q Consensus 86 gA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E 146 (480)
..-|+ |.|..-|++.+..++... .-.+++-|..++.+||||||+||.-++-.|.
T Consensus 108 npYHN-~~HA~dV~q~~~~ll~~~------~~~lt~le~~alliAAl~HDvdHpG~nN~Fl 161 (380)
T 3hr1_A 108 VPYHN-WKHAVTVAHCMYAILQNN------NGLFTDLERKGLLIACLCHDLDHRGFSNSYL 161 (380)
T ss_dssp CSSSS-HHHHHHHHHHHHHHHHTS------TTTSCHHHHHHHHHHHHHTTTTCCSCCHHHH
T ss_pred CCCcC-cHHHHHHHHHHHHHHHhc------cccCCHHHHHHHHHHHHHccCCCCCCCCHHH
Confidence 45677 999999999998887642 1247889999999999999999987776654
No 35
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=94.52 E-value=0.04 Score=60.56 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=45.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCccccc
Q 039727 85 PGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFE 146 (480)
Q Consensus 85 PgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E 146 (480)
+..-|+ |.|..-|++.+..++....- .-.+++-+..++.+||||||+||.-++-.|.
T Consensus 439 ~~pyHN-~~Ha~dv~q~~~~~~~~~~~----~~~~~~~e~~a~~~aa~~HD~~H~G~~N~f~ 495 (691)
T 3ibj_A 439 DPPYHN-WMHAFSVSHFCYLLYKNLEL----TNYLEDIEIFALFISCMCHDLDHRGTNNSFQ 495 (691)
T ss_dssp CCSSSB-HHHHHHHHHHHHHHHHHHTG----GGTSCHHHHHHHHHHHHHTTTTCCCCCCSCS
T ss_pred CCCCcC-cHHHHHHHHHHHHHHhccch----hhhCCHHHHHHHHHHHHHccCCCCCCCcHHH
Confidence 345677 99999999998877764321 1247889999999999999999998888775
No 36
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=94.46 E-value=0.0041 Score=61.34 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=64.4
Q ss_pred cccccccccccCCCCCc-ccChHHHH--HhcCHHHHhhhcccccCccccccCCCC------CCchhHHHHHHHHHHHHHH
Q 039727 37 QKERYSKHVHDNVHGNI-YLDPLALQ--FIDTEEFQRLRDLKQLGLSHLVYPGAV------HSRFEHSLGVYWLAGTAVQ 107 (480)
Q Consensus 37 ~~~~~~k~i~DpvhG~I-~l~~~~~~--iIdtp~fQRLR~IkQLG~~~~vyPgA~------HtRFeHSLGv~hLA~~~~~ 107 (480)
+.....|+++-|.||.= +++....+ ++. ++++|++-..-...-.|.+.. ..-+.||+.|+.+|..+++
T Consensus 49 Lt~~lLr~aNS~~~~~~~~I~si~~Av~~LG---~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~hs~~~A~~a~~la~ 125 (288)
T 3ljx_A 49 LTGRILRFANAPAQGTRRPVASVIDAIDLVG---LPAVRQFALSLSLIDAHREGRCEAFDYAAYWQKSLARAVALQSITA 125 (288)
T ss_dssp HHHHHHHHHHSCC--CCSCCCSHHHHHHHHC---HHHHHHHHHGGGC----CTTSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccCCCCCCCCHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 33345677788888753 34443333 333 344444332111111232211 1237999999999999886
Q ss_pred HHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccc---hhhcc---------CCCCCcHHHHHHHHHH
Q 039727 108 TLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREF---LPRVL---------SGSNWTHEDMSLKMID 170 (480)
Q Consensus 108 ~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~---~~~~~---------~~~~~~HE~~s~~ii~ 170 (480)
.+ +.. +...+.+||||||||-..+...+...+ ..... .-.+.+|.++|..+++
T Consensus 126 ~~--------~~~--~~~~~~~agLLhdiGkl~l~~~~p~~~~~il~~~~~~~l~~~E~~~lg~~H~~vGa~ll~ 190 (288)
T 3ljx_A 126 QA--------STV--APKEAFTLGLLADVGRLALATAWPEEYSECLRKADGEALIALERERFATDHDELTRMLLT 190 (288)
T ss_dssp TS--------SSS--CHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HC--------CCC--CHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHccCHHHHHHHHHH
Confidence 53 332 245689999999999876655442211 11000 0014788888888765
No 37
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A*
Probab=94.37 E-value=0.03 Score=58.23 Aligned_cols=55 Identities=29% Similarity=0.319 Sum_probs=43.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCccccc
Q 039727 87 AVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFE 146 (480)
Q Consensus 87 A~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E 146 (480)
.-|+ |.|..-|++.+..++..- +-.-.+++-+..++.+||||||+||.-++-.|.
T Consensus 160 pYHN-~~HA~dV~Q~~~~ll~~~----~l~~~ls~le~lalliAAl~HDvdHpG~nN~Fl 214 (421)
T 3g4g_A 160 AYHN-NIHAADVVQSTHVLLSTP----ALEAVFTDLEILAAIFASAIHDVDHPGVSNQFL 214 (421)
T ss_dssp SSSS-HHHHHHHHHHHHHHHTCG----GGTTTSCHHHHHHHHHHHHHTTTTCCSSCHHHH
T ss_pred CCcC-cHHHhHHHHHHHHHHhhh----hhhhhcchHHHHHHHHHHHHhcCCCCCCCCHHH
Confidence 6677 999999999998776431 112247888999999999999999987776664
No 38
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=93.94 E-value=0.037 Score=62.69 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=58.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccch---hhccCCCCCcHH
Q 039727 86 GAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFL---PRVLSGSNWTHE 162 (480)
Q Consensus 86 gA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~---~~~~~~~~~~HE 162 (480)
..-|+ |.|..-|++.+..++... +-.-.+++.|+.++.+||||||+||.=++-.|.-.-. .... + ..-+|
T Consensus 613 ~pyHN-~~Ha~dV~q~~~~~l~~~----~~~~~~~~~e~~a~~~aa~~HD~~HpG~~N~f~~~~~~~la~~y-~-~svlE 685 (878)
T 3bjc_A 613 VAYHN-WRHAFNTAQCMFAALKAG----KIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLY-C-HSIME 685 (878)
T ss_dssp SSSSS-HHHHHHHHHHHHHHHHTT----CCGGGSCHHHHHHHHHHHHHTTTTCCCTTCCTGGGSSCTTHHHH-C-TTHHH
T ss_pred CCCcc-HHHHHHHHHHHHHHHhcc----chhhcCCHHHHHHHHHHHHHccCCCCCCCCHHHHhcCCHHHHHc-C-chHHH
Confidence 45677 999999999998887642 1112478899999999999999999888777753210 0011 1 24566
Q ss_pred HHHHHHHHHHHHhcCCC
Q 039727 163 DMSLKMIDYIVDQHYID 179 (480)
Q Consensus 163 ~~s~~ii~~il~~~~~~ 179 (480)
.......-.++.+.+.+
T Consensus 686 ~~h~~~~~~~l~~~~~~ 702 (878)
T 3bjc_A 686 HHHFDQCLMILNSPGNQ 702 (878)
T ss_dssp HHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHHhCccCc
Confidence 66666655666554443
No 39
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=93.87 E-value=0.12 Score=48.36 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=42.9
Q ss_pred HHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcC
Q 039727 67 EFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 67 ~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiG 137 (480)
...||++++--|.. ..+...|=-|||.-|+.+|..+........+. ++ |...+..+||+||+|
T Consensus 11 ~~~rLK~i~R~~~~---~~~~~EnVaeHS~~VA~lA~~la~~~~~~~~~--~v---D~~~~~~~aLlHDi~ 73 (201)
T 2paq_A 11 HLSRLKLINRWPLM---RNVRTENVSEHSLQVAMVAHALAAIKNRKFGG--NV---NAERIALLAMYHDAS 73 (201)
T ss_dssp HHGGGGGCBSCTTS---CCSSCCBHHHHHHHHHHHHHHHHHHHHHHSCC--CC---CHHHHHHHHHHTTTT
T ss_pred HHHhhccCccCCCC---CCCCCccHHHHHHHHHHHHHHHHhhhHHhcCc--cc---CHHHHHHHHHhcccc
Confidence 45789999887653 22234566899999999999887321111111 22 456788999999998
No 40
>3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis}
Probab=93.35 E-value=0.031 Score=52.56 Aligned_cols=58 Identities=21% Similarity=0.071 Sum_probs=42.3
Q ss_pred hhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHH--HHHHHHHHhhhcCC
Q 039727 70 RLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDI--QTVKLAGLLHDVGH 138 (480)
Q Consensus 70 RLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~--~~v~iAaLlHDiGH 138 (480)
|.+.+.+++--|-|- -+|+--|..+|..+++.+.... ++++.+. .++..||+|||||-
T Consensus 6 r~~sv~~l~~ry~vd-------~~ha~~V~~~A~~Lf~~l~~~~----~l~~~~~~~~lL~~Aa~LHdIG~ 65 (209)
T 3rf0_A 6 RQRTAKSLADHYNID-------REQARRVLETTEQLYTQWLAQN----TKLVQPQLEALLKWAAMLHEVGL 65 (209)
T ss_dssp HHHHHHHHHHHHTCC-------HHHHHHHHHHHHHHHHHHHHHC----GGGCCHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHHHHccc
Confidence 444555554444333 3899999999999999987532 3445567 89999999999995
No 41
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=93.20 E-value=0.082 Score=48.36 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=43.7
Q ss_pred HHHhhhcccccCcccc-ccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcC
Q 039727 67 EFQRLRDLKQLGLSHL-VYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 67 ~fQRLR~IkQLG~~~~-vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiG 137 (480)
+..||++|+--|.... |. -..|=.|||..|+-+|..+...++...+ ++ |...+..+||+||++
T Consensus 10 ~~~~Lk~i~R~~~~~~g~~--~~esvaeHs~rVa~~A~~la~~~~~~~~---~~---d~~~v~~~aLlHD~~ 73 (177)
T 2cqz_A 10 LVQTLKRLPRMGWLIKGVQ--EPESIADHSFGVAFITLVLADVLEKRGK---RI---DVEKALKMAIVHDLA 73 (177)
T ss_dssp HHGGGGTSBCHHHHHTTCS--SCCBHHHHHHHHHHHHHHHHHHHHHTTC---CC---CHHHHHHHHHHTTTT
T ss_pred HHHHhccCccCCCcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHcCC---CC---CHHHHHHHHHHhchH
Confidence 4578888888763222 32 2467799999999999988876433221 23 345677999999996
No 42
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=92.67 E-value=0.032 Score=53.45 Aligned_cols=44 Identities=27% Similarity=0.291 Sum_probs=30.1
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCC--CCCcc
Q 039727 85 PGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGH--GPFSH 143 (480)
Q Consensus 85 PgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGH--gPFSH 143 (480)
|--.-+|.+|+|-++..|++-. + +..-+++|||+||||| ++|+|
T Consensus 54 PD~~v~ql~HaLQTAe~ar~dg-------~--------d~dw~~laaLlHDLGkll~~~~~ 99 (250)
T 2ibn_A 54 PDVDFPNSFHAFQTAEGIRKAH-------P--------DKDWFHLVGLLHDLGKVLALFGE 99 (250)
T ss_dssp ---CCCHHHHHHHHHHHHHHHS-------T--------TCHHHHHHHHHTTGGGHHHHTTC
T ss_pred CCCcccHHHHHHHHHHHHHHhC-------c--------ChhHHHHHHHHhccHhhhcccCC
Confidence 4455689999999988877521 1 1136899999999999 34444
No 43
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=92.18 E-value=0.016 Score=56.57 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCccccccc---chhhccCC----------C
Q 039727 91 RFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFERE---FLPRVLSG----------S 157 (480)
Q Consensus 91 RFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~---~~~~~~~~----------~ 157 (480)
-+.||+.|+.+|..+++.+ +++ ...+.+|||+||||-..+...+... +......+ .
T Consensus 106 ~~~hs~~~a~~a~~la~~~--------~~~---~~~~~~agLLhdiGkl~l~~~~p~~~~~i~~~~~~~~~~~~~E~~~l 174 (275)
T 3m1t_A 106 FWGNTFEVAIICQELAKRL--------GTL---PEEAFTCGILHSIGELLIVNGDPAVAATISAAVADGADRNLMEKELL 174 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TSC---HHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh--------CCC---HHHHHHHHHHHHccHHHHHHHCHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4789999999999999875 222 2457999999999987654433221 11000011 1
Q ss_pred CCcHHHHHHHHHH
Q 039727 158 NWTHEDMSLKMID 170 (480)
Q Consensus 158 ~~~HE~~s~~ii~ 170 (480)
+.+|.++|..+++
T Consensus 175 g~~H~~vGa~ll~ 187 (275)
T 3m1t_A 175 GYDNAEIGALLAQ 187 (275)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 4678888887765
No 44
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Probab=92.14 E-value=0.089 Score=54.75 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHhhhcCCCCCccccc
Q 039727 119 IDDIDIQTVKLAGLLHDVGHGPFSHMFE 146 (480)
Q Consensus 119 i~~~d~~~v~iAaLlHDiGHgPFSH~~E 146 (480)
+++-+..++.+||||||+||.=++-.|.
T Consensus 153 l~~lE~lAlliAAl~HDvdHpG~nN~Fl 180 (420)
T 1so2_A 153 IPALELMALYVAAAMHDYDHPGRTNAFL 180 (420)
T ss_dssp SCHHHHHHHHHHHHHTTTTCCSCCHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCCchh
Confidence 4667888999999999999987766654
No 45
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=92.07 E-value=0.16 Score=51.85 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=35.8
Q ss_pred ccCCCCCCc----hhHHHH-HHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCC
Q 039727 83 VYPGAVHSR----FEHSLG-VYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHG 139 (480)
Q Consensus 83 vyPgA~HtR----FeHSLG-v~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHg 139 (480)
.+|.|.+.. ++|+|. |+.+|.++.+.- | ...+-|..++-+||||||||..
T Consensus 64 ~lPAa~~H~~GGLLeHtLerVa~~A~~l~~~Y----P---~~~~~Er~~l~~aALLHDIGKl 118 (393)
T 3kq5_A 64 VLPIRLDEPLCSLMNEGLLRGVNSLNHYIQNH----P---EATPLERYALFSAGLLLEVAHA 118 (393)
T ss_dssp TCCSSTTSCTTHHHHHHHHHHHHHHHHHHHHC----T---TCCHHHHHHHHHHHHHTTTTHH
T ss_pred hCCCcccCCCCcHHHHHHHHHHHHHHHHHHhC----C---CCCchHHHHHHHHHHHhccchh
Confidence 466664332 699999 999998887652 2 1223457789999999999953
No 46
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=92.04 E-value=0.033 Score=58.55 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=56.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCCCCcccccccch---hh--ccCC-------
Q 039727 89 HSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHGPFSHMFEREFL---PR--VLSG------- 156 (480)
Q Consensus 89 HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHgPFSH~~E~~~~---~~--~~~~------- 156 (480)
...+.||+.|+.+|..+++.+.... ..+...+.+||||||||-..+.+.+...+. .. ...+
T Consensus 277 ~~~w~hs~~~A~~a~~LA~~~~~~~-------~~~~~~aflaGLLhDIGkl~l~~~~p~~~~~i~~~~~~~~~~~~~~~E 349 (457)
T 3mem_A 277 VDYWQQAIWQAQSAGILASMMPRGQ-------RPLFGLAYLAGLLHNFGHLVLAQVFPPHFKLVCRSLEVSPHIDSSVIE 349 (457)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCGGG-------CCCHHHHHHHHHHTTTHHHHHHHHSHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc-------CCCHHHHHHHHHHHHhhHHHHHHHCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4569999999999999887642110 123456899999999998877655533211 00 0000
Q ss_pred ---CCCcHHHHHHHHHHHHHHhcCCCCChhhhhhhhhhccCC
Q 039727 157 ---SNWTHEDMSLKMIDYIVDQHYIDIDSGRLDREMIVTSHA 195 (480)
Q Consensus 157 ---~~~~HE~~s~~ii~~il~~~~~~~~~~~~~~~~I~~~~~ 195 (480)
.+.+|.++|..+++ .+++ ++ .+. +.|..+..
T Consensus 350 ~~~lg~~H~~vGa~Ll~----~W~l--P~-~i~-~aI~~HH~ 383 (457)
T 3mem_A 350 HYLLGITREQIAAQLME----NWGM--PD-EVT-LAIRYQKN 383 (457)
T ss_dssp HHHHSSCHHHHHHHHHH----HTTC--CH-HHH-HHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHH----HcCC--CH-HHH-HHHHHhcC
Confidence 24678888887664 4554 23 333 45544443
No 47
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=91.88 E-value=0.35 Score=46.47 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=55.9
Q ss_pred cccccCCCCCCchhHHHHHHHHHHHHHH----HHHHccC-CCCCCChHHH-HHHHHHHHhhhcCCCCCcccccccchhhc
Q 039727 80 SHLVYPGAVHSRFEHSLGVYWLAGTAVQ----TLKDYQG-LELDIDDIDI-QTVKLAGLLHDVGHGPFSHMFEREFLPRV 153 (480)
Q Consensus 80 ~~~vyPgA~HtRFeHSLGv~hLA~~~~~----~l~~~~~-~~l~i~~~d~-~~v~iAaLlHDiGHgPFSH~~E~~~~~~~ 153 (480)
+.+.|||- |=.+|+.+|...+..+.+ .+.+.-+ ....++..+. .++.+||++||+|-. +-.|..-+....
T Consensus 8 ~c~A~p~e--TL~EHt~dvL~~~e~Lk~~y~~sI~r~L~~~~i~Ld~e~~~~ll~~a~llHDiGKa--~~~FQ~k~l~~~ 83 (244)
T 3m5f_A 8 EVLAFKNQ--SLIDHVNDMVKYWERIKYRYLKTIKRALEALNIKLDIEKVDEFMKILIKLHDIGKA--SKIYQRAIINDQ 83 (244)
T ss_dssp SCEEETTE--EHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHTTGGGG--BHHHHHHHHCTT
T ss_pred hhhhCCCC--CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccccCHHHHHHHHHHHHHHcccccC--CHHHHHHHHhcc
Confidence 46778865 667999999999886422 1221110 1134555444 678899999999974 222332111111
Q ss_pred cCCCCCcHHHHHHHHHHHHHHh
Q 039727 154 LSGSNWTHEDMSLKMIDYIVDQ 175 (480)
Q Consensus 154 ~~~~~~~HE~~s~~ii~~il~~ 175 (480)
.......||-.|..++..++..
T Consensus 84 ~~~~~~~He~lSa~fl~~~l~~ 105 (244)
T 3m5f_A 84 EKLMGFRHELVSAYYTYHILLK 105 (244)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHhh
Confidence 1113578999999999877653
No 48
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=91.56 E-value=0.43 Score=46.49 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=55.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHH----HHccCCCCCCChHH-HHHHHHHHHhhhcCCCCCcccccccchh---hc-----
Q 039727 87 AVHSRFEHSLGVYWLAGTAVQTL----KDYQGLELDIDDID-IQTVKLAGLLHDVGHGPFSHMFEREFLP---RV----- 153 (480)
Q Consensus 87 A~HtRFeHSLGv~hLA~~~~~~l----~~~~~~~l~i~~~d-~~~v~iAaLlHDiGHgPFSH~~E~~~~~---~~----- 153 (480)
.-|+=..|++.|+.+|..+++.. ++.-...+++++.+ ...+..+|+|||||-. +-.|...+.. .+
T Consensus 22 ~~~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~--~~~fq~~~~~~~~~l~~~g~ 99 (265)
T 3sk9_A 22 PFHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKA--SPVFQAGWEEGKERVQRAGL 99 (265)
T ss_dssp TTSBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGC--SGGGCC--------------
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHHHhhccC
Confidence 34666899999999999987652 11000124455433 4677888889999975 4445443211 00
Q ss_pred ---cCCCCCcHHHHHHHHHHHHHHhcCC
Q 039727 154 ---LSGSNWTHEDMSLKMIDYIVDQHYI 178 (480)
Q Consensus 154 ---~~~~~~~HE~~s~~ii~~il~~~~~ 178 (480)
....+..|+..|..++...+.+.+.
T Consensus 100 ~~~~~~~~~~Ha~aGa~ll~~~L~~~g~ 127 (265)
T 3sk9_A 100 PFGELLDWVAHGVFTELFLRRLLKEKGL 127 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHHHTTC
T ss_pred CccccCCCCChHHHHHHHHHHHHHhCCC
Confidence 0123578999999999887776553
No 49
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=89.75 E-value=0.79 Score=41.83 Aligned_cols=60 Identities=20% Similarity=0.104 Sum_probs=44.1
Q ss_pred HHHhhhcccccCccccccCC--CCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcC
Q 039727 67 EFQRLRDLKQLGLSHLVYPG--AVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 67 ~fQRLR~IkQLG~~~~vyPg--A~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiG 137 (480)
...||++++--| +++-| -..|=-|||..|+-+|..+... .+++.+++.-+...||+||+|
T Consensus 16 ~~~~LK~i~R~g---w~~~gv~~~EsVAeHS~~vA~iA~~la~~--------~~vd~~~~~r~~~maL~HDl~ 77 (173)
T 1ynb_A 16 EVGSLKLTPRSG---WLKLGIRLPESVAEHNFRAAIIAFILALK--------SGESVEKACKAATAALFHDLH 77 (173)
T ss_dssp HHHGGGGSBCGG---GGGGTCSSCCBHHHHHHHHHHHHHHHHHH--------TTCCHHHHHHHHHHHHHTTTT
T ss_pred HHHHhccCccCC---cccCCCCCCCcHHHHHHHHHHHHHHHhhh--------cCCChhHHHHHHHHHHHcchH
Confidence 467899999877 44545 4577789999999999877652 135543435566889999997
No 50
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=85.46 E-value=1.6 Score=46.32 Aligned_cols=58 Identities=17% Similarity=0.075 Sum_probs=41.4
Q ss_pred hcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCC
Q 039727 72 RDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGH 138 (480)
Q Consensus 72 R~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGH 138 (480)
+.+.+++--|.+- -+|+--|..+|..+++.++...+ +...+.+.++++.||+|||||-
T Consensus 317 ~s~~~l~~ry~~d-------~~ha~~V~~~a~~Lf~~l~~~~~--l~~~~~~~~lL~~Aa~LhdiG~ 374 (513)
T 1u6z_A 317 RTASSLANQYHID-------SEQARRVLDTTMQMYEQWREQQP--KLAHPQLEALLRWAAMLHEVGL 374 (513)
T ss_dssp HHHHHHHHHTTCC-------HHHHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHHHHHhhC--cCCChhHHHHHHHHHHHHHccC
Confidence 4444554444333 57999999999999998876322 1123556789999999999996
No 51
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=82.58 E-value=2.1 Score=40.28 Aligned_cols=62 Identities=21% Similarity=0.183 Sum_probs=42.0
Q ss_pred HHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcC
Q 039727 67 EFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 67 ~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiG 137 (480)
...||+.|+--|.. .-+-..|=-|||..|+-+|..+...... .+. ++ |..-+..+||+||++
T Consensus 10 ~~~rLK~i~Rw~~~---~~~~~EsvAeHS~~vA~iA~~La~~~~~-~~~--~v---D~~r~~~maL~HDl~ 71 (216)
T 3mzo_A 10 SLSDLENIYRCPGK---FKYQEHSVAEHSYKVTSIAQFFGAVEED-AGN--EV---NWRALYEKALNHDYS 71 (216)
T ss_dssp HHHHGGGCBSSCSS---CCSSCCBHHHHHHHHHHHHHHHHHHHHH-TTC--CC---CHHHHHHHHHHTTGG
T ss_pred HHHhcCcccCcCCC---CCCCCCCHHHHHHHHHHHHHHHHHHHHh-ccC--CC---CHHHHHHHHHHccHH
Confidence 35789999885543 2234457789999999999887753221 121 23 344578899999998
No 52
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=82.50 E-value=1.2 Score=41.04 Aligned_cols=61 Identities=25% Similarity=0.444 Sum_probs=41.0
Q ss_pred HHhhhcccccCccccccCC--CCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcC
Q 039727 68 FQRLRDLKQLGLSHLVYPG--AVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 68 fQRLR~IkQLG~~~~vyPg--A~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiG 137 (480)
..||++++--|.. .-| -..|=-|||..|+-+|..+....+.. +. +++ ..-+..+||+||++
T Consensus 16 ~~~Lk~v~R~~~~---~~gv~~~EsvAeHS~~vA~ia~~la~~~~~~-~~--~~d---~~r~~~~aL~HDl~ 78 (184)
T 1xx7_A 16 AGKLKRIPRMGWL---IKGVPNPESVADHSYRVAFITLLLAEELKKK-GV--EID---VEKALKIAIIHDLG 78 (184)
T ss_dssp HHHTTTSBCHHHH---HHTCSSCCBHHHHHHHHHHHHHHHHHHHHHT-TC--CCC---HHHHHHHHHHTTTT
T ss_pred HHHhccCcccCCC---CCCCCCCCcHHHHHHHHHHHHHHHHHHHhhc-cC--CCC---HHHHHHHHHHcCcH
Confidence 5688888876643 223 24567899999999998887654222 21 233 34456889999995
No 53
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=80.61 E-value=1.2 Score=47.21 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcCCC
Q 039727 93 EHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVGHG 139 (480)
Q Consensus 93 eHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiGHg 139 (480)
+|+--|..+|..+++.+. +..++.+.++++.||+|||||-.
T Consensus 334 ~ha~~V~~~a~~Lf~ql~------~~~~~~~~~lL~~Aa~LhdiG~~ 374 (508)
T 3hi0_A 334 EHARELADWSGRTFPVFG------IDETEEESRYRQAACLLADISWR 374 (508)
T ss_dssp HHHHHHHHHHHHHGGGGT------CCCCHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHhhc------cCCChHHHHHHHHHHHHHHHhHH
Confidence 788888888888887653 23457788999999999999963
No 54
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=75.01 E-value=0.68 Score=47.97 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=56.9
Q ss_pred HHHHHhcCHHHHh-hhcccccCccccccCCCC-----------CCchhHHHHHHHHHHHHHHH-HHHccCCCCCCChHHH
Q 039727 58 LALQFIDTEEFQR-LRDLKQLGLSHLVYPGAV-----------HSRFEHSLGVYWLAGTAVQT-LKDYQGLELDIDDIDI 124 (480)
Q Consensus 58 ~~~~iIdtp~fQR-LR~IkQLG~~~~vyPgA~-----------HtRFeHSLGv~hLA~~~~~~-l~~~~~~~l~i~~~d~ 124 (480)
...+|+.+|.-.+ |+.+.++|+-..+||.-. +|-.+|+|-+ ++. +.. +...+
T Consensus 222 E~~kiL~~~~~~~~l~~l~~~GlL~~~lPe~~~i~~~~q~~h~~~v~~h~L~~-------~d~~i~~----~~~~~---- 286 (415)
T 3aql_A 222 ESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKN-------TDTRIHN----DMRVN---- 286 (415)
T ss_dssp HHHHHHTSSCHHHHHHHHHHTTCSTTTCHHHHTTCCSSSCCHHHHHHHHHHHH-------HHHHHHT----TCCCC----
T ss_pred HHHHHHcCCCHHHHHHHHHHcCChHHhchhHHHHhccCCcchHHHHHHHHHHH-------HHHHHhc----CCCCC----
Confidence 3456666655444 777778888777777421 2445555544 111 211 11111
Q ss_pred HHHHHHHHhh-hcCCCCCcccccccchhhccCCCC--CcHHHHHHHHHHHHHHhcCCC
Q 039727 125 QTVKLAGLLH-DVGHGPFSHMFEREFLPRVLSGSN--WTHEDMSLKMIDYIVDQHYID 179 (480)
Q Consensus 125 ~~v~iAaLlH-DiGHgPFSH~~E~~~~~~~~~~~~--~~HE~~s~~ii~~il~~~~~~ 179 (480)
..+.+||||| |+|-+.-.+ .+. .|.+ ..|.+.+..+++.++...++.
T Consensus 287 ~~L~lAALLH~di~K~~~~~------~~~--~G~~~~~~h~~~ga~~a~~~~~rl~l~ 336 (415)
T 3aql_A 287 PAFLFAAMFWYPLLETAQKI------AQE--SGLTYHDAFALAMNDVLDEACRSLAIP 336 (415)
T ss_dssp HHHHHHHHTHHHHHHHHHHH------HHT--TCCCHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHhHhcCcchhhhhhhh------hhc--cCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 3688999999 999752111 110 1211 369999999999888876653
No 55
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=68.33 E-value=5.7 Score=37.17 Aligned_cols=69 Identities=16% Similarity=0.086 Sum_probs=47.1
Q ss_pred cccccCCCCCcccChHHHHHhcCHHHHhhhcccccCccccccCC-CCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCCh
Q 039727 43 KHVHDNVHGNIYLDPLALQFIDTEEFQRLRDLKQLGLSHLVYPG-AVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDD 121 (480)
Q Consensus 43 k~i~DpvhG~I~l~~~~~~iIdtp~fQRLR~IkQLG~~~~vyPg-A~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~ 121 (480)
--.-||..+.|.|.+.+ .+|++++--|. ..+| -..|=-|||+-|+.+|..+. + +++.
T Consensus 19 ~Dll~P~~~~i~i~dia---------~~Lk~i~R~~~---~~~~~~~eSVAeHS~~va~ia~~l~-------~---~~~~ 76 (207)
T 2gz4_A 19 LDLLDPSPLDVEIADIA---------HGLARVARWNG---QTRGDHAFTVAQHCLIVETIFCRMC-------P---GATP 76 (207)
T ss_dssp EESSSCCGGGCCHHHHH---------HHHTTCBSGGG---CCSSSSCCBHHHHHHHHHHHHHHHC-------T---TCCH
T ss_pred ccCCCCChhhhhHHHHH---------HHHhhCcccCC---CCCCCCCccHHHHHHHHHHHHHHHC-------C---CCCH
Confidence 34568888888776554 37777776442 2233 24567899999999997662 1 2442
Q ss_pred HHHHHHHHHHHhhhcC
Q 039727 122 IDIQTVKLAGLLHDVG 137 (480)
Q Consensus 122 ~d~~~v~iAaLlHDiG 137 (480)
+ +..+||+||++
T Consensus 77 ---r-~~~~aL~HD~~ 88 (207)
T 2gz4_A 77 ---D-EMQMALLHDAP 88 (207)
T ss_dssp ---H-HHHHHHTTTTT
T ss_pred ---H-HHHHHHhcCch
Confidence 2 78889999998
No 56
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=68.13 E-value=4 Score=37.17 Aligned_cols=31 Identities=42% Similarity=0.581 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhc
Q 039727 92 FEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDV 136 (480)
Q Consensus 92 FeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDi 136 (480)
+.|.++|+.+... ++++.+. -..+||||||+
T Consensus 32 i~Hpl~VA~il~~-----------~~~~~d~---~~i~AALLHDv 62 (178)
T 3nr1_A 32 INHPIGVARILTH-----------EAGITDI---VVLQAALLHDT 62 (178)
T ss_dssp THHHHHHHHHHHH-----------TSCCCCH---HHHHHHHHTTH
T ss_pred HHHHHHHHHHHHH-----------HcCCCCH---HHHHHHHhhhH
Confidence 7999999977631 3454232 36899999997
No 57
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=66.97 E-value=5.4 Score=37.24 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=38.9
Q ss_pred HHHhhhcccccCccccccCCC--CCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcC
Q 039727 67 EFQRLRDLKQLGLSHLVYPGA--VHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 67 ~fQRLR~IkQLG~~~~vyPgA--~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiG 137 (480)
...||++|+--|.. +.|. ..|=-|||..|+-+|..+.. .++ |..-+...||+||++
T Consensus 23 ~~~~LK~i~R~g~~---~~gv~~~ESVAEHS~~vAliA~~l~~---------~~v---D~~r~~~maL~HDl~ 80 (204)
T 4dmb_A 23 LVGQLKRVPRTGWV---YRNVQRPESVSDHMYRMAVMAMVIKD---------DRL---NKDRCVRLALVHDMA 80 (204)
T ss_dssp HHHHGGGCBCHHHH---HTTCSSCCBHHHHHHHHHHHHHHSCC---------TTS---CHHHHHHHHHHTTTT
T ss_pred HHHHhccCccCCCc---CCCCCCCCcHHHHHHHHHHHHHHHcc---------ccC---CHHHHHHHHHhcchH
Confidence 46789999887643 3332 45778999999999986531 123 333466779999998
No 58
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=64.66 E-value=4.2 Score=37.02 Aligned_cols=31 Identities=39% Similarity=0.457 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhc
Q 039727 92 FEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDV 136 (480)
Q Consensus 92 FeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDi 136 (480)
+.|.++|+.+... ++++.+. -..+||||||+
T Consensus 34 i~Hpl~VA~ila~-----------~l~~~D~---~~i~AAlLHDv 64 (179)
T 3nqw_A 34 VNHVINVSTILSV-----------EACITDE---GVLMAALLHDV 64 (179)
T ss_dssp HHHHHHHHHHHHT-----------TTCCCCH---HHHHHHHTTTH
T ss_pred HHHHHHHHHHHHH-----------HcCCCCH---HHHHHHHhhhH
Confidence 8999999977541 3455332 36889999997
No 59
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=61.91 E-value=3.8 Score=38.14 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=38.8
Q ss_pred HHHhhhcccccCccccccCC-CCCCchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhcC
Q 039727 67 EFQRLRDLKQLGLSHLVYPG-AVHSRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDVG 137 (480)
Q Consensus 67 ~fQRLR~IkQLG~~~~vyPg-A~HtRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDiG 137 (480)
+..||++|+--|.. +.+ -..|=-|||..|+-+|..+.+.+ + -++ |..-+...||+||++
T Consensus 19 ~~~~LK~i~R~~~~---~~~~r~EsVAeHS~~vAliA~~la~~~----~--~~v---d~~r~~~maL~HDl~ 78 (200)
T 3kh1_A 19 EIDKLKTILRQTLL---TDSSRRENDAEHSWHIATMAFLLAEYA----D--EAV---QIGRVARMLLIHDIV 78 (200)
T ss_dssp HGGGGGGCEEEEEC---TTSSSEEEHHHHHHHHHHHHHHTGGGS----C--TTC---CHHHHHHHHHHTTTT
T ss_pred HHHhhCcCCcCCCc---CCCCCCccHHHHHHHHHHHHHHHHHHc----c--CCC---CHHHHHHHHHhcChH
Confidence 45788888876643 322 23477899999999998765321 1 123 333467779999987
No 60
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=50.18 E-value=19 Score=36.58 Aligned_cols=73 Identities=14% Similarity=0.027 Sum_probs=39.9
Q ss_pred HHHHHhcCHHHHh-hhcccccCccccccCCCCCCc-hhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhh
Q 039727 58 LALQFIDTEEFQR-LRDLKQLGLSHLVYPGAVHSR-FEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHD 135 (480)
Q Consensus 58 ~~~~iIdtp~fQR-LR~IkQLG~~~~vyPgA~HtR-FeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHD 135 (480)
...+|+.+|.-.+ |+.+.++|.-..++|.....+ ....+...+ ..+.........+ . .....+++||||||
T Consensus 195 El~kiL~~~~~~~~l~~l~~~glL~~~lPe~~~~~~~~q~l~~~~---~~~~~~~~~~~~~--~--~~~~~l~laaLlhd 267 (390)
T 1vfg_A 195 EIKLALREDRFLEILELYRKYRVLEEIIEGFQWNEKVLQKLYALR---KVVDWHALEFSEE--R--IDYGWLYLLILISN 267 (390)
T ss_dssp HHHHHHHCSSHHHHHHHHHHTTCHHHHSTTCCCCHHHHHHHHHHH---HHHHHHHHHGGGS--C--CCHHHHHHHHHHCS
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCHHHHhHhhhhhhhHHHHHHHHH---HHHHHhHHhhhcc--c--cchHHHHHHHHHcc
Confidence 3455666655545 888889999999999976543 111111111 1111111000001 1 12357999999999
Q ss_pred cC
Q 039727 136 VG 137 (480)
Q Consensus 136 iG 137 (480)
+|
T Consensus 268 i~ 269 (390)
T 1vfg_A 268 LD 269 (390)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 61
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=45.38 E-value=13 Score=38.65 Aligned_cols=62 Identities=10% Similarity=0.155 Sum_probs=40.8
Q ss_pred HHHHHhcCHHHHh-hhcccccCccccc-cCCCCC-CchhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhh
Q 039727 58 LALQFIDTEEFQR-LRDLKQLGLSHLV-YPGAVH-SRFEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLH 134 (480)
Q Consensus 58 ~~~~iIdtp~fQR-LR~IkQLG~~~~v-yPgA~H-tRFeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlH 134 (480)
...+|+.+|.-.+ |+.+.++|....+ +|.... ..|+|.+.. .. .+ +. ...+++|||||
T Consensus 255 El~kiL~~~~~~~~l~~L~~~GlL~~i~lPe~~~i~~~~~~l~~----------~~-----~~--~~--~~~l~lAaLlh 315 (448)
T 1ou5_A 255 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKN----------VD-----GF--SP--KPVTLLASLFK 315 (448)
T ss_dssp HHHHHHTSTTHHHHHHHHHHTTCGGGGTCCCCSCCHHHHHHHHH----------HT-----TS--CC--CHHHHHGGGCC
T ss_pred HHHHHHcCCCHHHHHHHHHHCCCceEecCcchhhHHHHHHHHHH----------HH-----hc--CC--CHHHHHHHHhc
Confidence 3456677776655 8888999999999 998654 335554421 11 11 11 13789999999
Q ss_pred hcCC
Q 039727 135 DVGH 138 (480)
Q Consensus 135 DiGH 138 (480)
|+|-
T Consensus 316 Di~k 319 (448)
T 1ou5_A 316 VQDD 319 (448)
T ss_dssp STTT
T ss_pred ChHH
Confidence 9983
No 62
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=33.64 E-value=30 Score=35.41 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCCCCCChHHHHHHHHHHHhhhc
Q 039727 92 FEHSLGVYWLAGTAVQTLKDYQGLELDIDDIDIQTVKLAGLLHDV 136 (480)
Q Consensus 92 FeHSLGv~hLA~~~~~~l~~~~~~~l~i~~~d~~~v~iAaLlHDi 136 (480)
+.|.++|+.+... ++.+. -..+||||||+
T Consensus 51 i~Hpl~VA~iLa~------------l~~D~----~~i~AALLHDv 79 (393)
T 1vj7_A 51 IVHPIQVAGILAD------------LHLDA----VTVACGFLHDV 79 (393)
T ss_dssp THHHHHHHHHHHH------------TTCCH----HHHHHHHHTTH
T ss_pred HHHHHHHHHHHHH------------hcCCH----HHHHHHHhhhH
Confidence 8999999977643 34443 25799999995
No 63
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=29.32 E-value=33 Score=32.33 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=33.1
Q ss_pred HHHh-hhcccccCccccccCCCCCCchhHHHHHHHHHHHHHH
Q 039727 67 EFQR-LRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQ 107 (480)
Q Consensus 67 ~fQR-LR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~ 107 (480)
-+++ |+.+.+.|....+.-||+-.|+.|.||..++..++.+
T Consensus 107 D~e~Al~~a~~~g~~~I~i~Ga~GgRlDH~laNi~lL~~~~~ 148 (231)
T 2omk_A 107 DQTKAVHYLQSKGIRKIAIVGATGKREDHTLGNISLLVEYMR 148 (231)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECccCCchhHHHHHHHHHHHHHh
Confidence 4555 6666677888888889999999999999999887643
No 64
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=26.68 E-value=34 Score=31.98 Aligned_cols=35 Identities=20% Similarity=0.036 Sum_probs=27.6
Q ss_pred hcccccCccccccCCCCCCchhHHHHHHHHHHHHH
Q 039727 72 RDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAV 106 (480)
Q Consensus 72 R~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~ 106 (480)
+.+.+.|....+.=||+-.|+.|.||..++..+..
T Consensus 87 ~~a~~~g~~~I~i~Ga~GgR~DH~lani~ll~~~~ 121 (222)
T 3lm8_A 87 DWALEKQPDIIQIFGITGGRADHFLGNIQLLYKGV 121 (222)
T ss_dssp HHHHHHCCSEEEEESCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEcCCCCchhHHHHHHHHHHHHH
Confidence 33444577778888999999999999998877653
No 65
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=24.16 E-value=33 Score=31.76 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=27.6
Q ss_pred hcccccCccccccCCCCCCchhHHHHHHHHHHHH
Q 039727 72 RDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTA 105 (480)
Q Consensus 72 R~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~ 105 (480)
+.+.+.|....+.=||+-.|+.|.||..++..+.
T Consensus 83 ~~a~~~~~~~I~i~Ga~GgR~DH~lani~ll~~~ 116 (212)
T 3l8m_A 83 DQAVKRGYRNIDVYGATGGRLDHFMGALQILEKP 116 (212)
T ss_dssp HHHHHTTCCEEEEESCSSSCHHHHHHHHHHHTCH
T ss_pred HHHHHCCCCEEEEEcCCCCchhHHHHHHHHHHhh
Confidence 3444568888888899999999999999988653
No 66
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=24.07 E-value=40 Score=31.59 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=27.5
Q ss_pred hhcccccCccccccCCCCCCchhHHHHHHHHHHH
Q 039727 71 LRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGT 104 (480)
Q Consensus 71 LR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~ 104 (480)
|+.+.+.|....+.=||+-.|+.|.||..++..+
T Consensus 85 l~~a~~~g~~~I~i~Ga~GGR~DH~lani~lL~~ 118 (223)
T 3k94_A 85 LDWAVEQTARCIRLFGATGGRLDHLFGNVELLLK 118 (223)
T ss_dssp HHHHHTTCCSEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEcCCCCchhHHHHHHHHHHh
Confidence 3444456888888889999999999999988765
No 67
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=21.16 E-value=77 Score=26.72 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=37.5
Q ss_pred hHHHHHhcCHHHHhhhcccccCccccccCCCCCCchhHHHHHHHHHHHHHH
Q 039727 57 PLALQFIDTEEFQRLRDLKQLGLSHLVYPGAVHSRFEHSLGVYWLAGTAVQ 107 (480)
Q Consensus 57 ~~~~~iIdtp~fQRLR~IkQLG~~~~vyPgA~HtRFeHSLGv~hLA~~~~~ 107 (480)
..+.+|+ ..|+.|++=-++.-+.+.=|||.|| +-|.||+.+-.-.+++
T Consensus 70 ~~eeev~--~~lK~L~YP~~isKS~L~a~g~pHs-Wp~~L~~L~WLvel~~ 117 (120)
T 2igp_A 70 KFEEEVP--RIFKDLGYPFALSKSSMYTVGAPHT-WPHIVAALVWLIDCIK 117 (120)
T ss_dssp THHHHHH--HHHHHTTCCSCCCHHHHHTTTSTTT-HHHHHHHHHHHHHHHH
T ss_pred ChHHHHH--HHHHHcCCCceeCHHHhcCCCCCcc-HHHHHHHHHHHHHHHH
Confidence 4455543 4678888888888888888999999 9999999987766654
Done!